Query 026565
Match_columns 237
No_of_seqs 125 out of 786
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.0 7.4E-06 2.5E-10 63.2 5.4 66 144-209 39-105 (137)
2 3b5d_A Multidrug transporter E 97.6 0.00044 1.5E-08 51.0 9.3 64 146-209 41-105 (110)
3 3b5d_A Multidrug transporter E 96.5 0.0043 1.5E-07 45.6 5.5 36 13-48 70-105 (110)
4 2i68_A Protein EMRE; transmemb 96.1 0.0035 1.2E-07 48.1 3.3 38 10-48 68-105 (137)
5 1u7g_A Probable ammonium trans 30.3 53 0.0018 28.9 4.5 90 8-97 164-263 (385)
6 1vpu_A VPU protein, VPU(39-81) 18.0 21 0.00073 21.5 -0.4 14 224-237 4-17 (45)
7 3b9w_A Ammonium transporter fa 15.1 5.9E+02 0.02 22.4 9.2 80 8-89 142-232 (407)
8 3arc_T Photosystem II reaction 12.7 2.1E+02 0.0071 15.8 3.5 15 174-188 14-28 (32)
9 3ogl_Q JAZ1 incomplete degron 9.8 34 0.0012 17.1 -1.0 19 214-232 1-19 (21)
10 2l9u_A Receptor tyrosine-prote 8.9 2.7E+02 0.0091 15.6 2.4 10 197-206 21-30 (40)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.99 E-value=7.4e-06 Score=63.22 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=43.1
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHhHhccCCC
Q 026565 144 NLGSTGLLVSWLMKYADNIIKVYS-TSMAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP 209 (237)
Q Consensus 144 ~~a~~Gl~va~vlk~~d~i~k~~a-~s~siv~s~lls~~~f~~~~t~~~~vG~~lV~~s~~lY~~~~ 209 (237)
..++...+....+|+.+....... ..+.++++.++++++|||++|+..++|.++|+.|+++.+..+
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334444556667787766544444 789999999999999999999999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.60 E-value=0.00044 Score=51.04 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=51.1
Q ss_pred HHhhhhhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHhHhccCCC
Q 026565 146 GSTGLLVSWLMKYADNIIKVYS-TSMAMLLTMVLSVYLFNFKPTLQLFLGIIICMMSLHMYFAPP 209 (237)
Q Consensus 146 a~~Gl~va~vlk~~d~i~k~~a-~s~siv~s~lls~~~f~~~~t~~~~vG~~lV~~s~~lY~~~~ 209 (237)
.+...+....+|+.|-...... ..++++++.++++++|||++|+..++|..+++.|+++-+..+
T Consensus 41 ~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3334455667787765554333 688999999999999999999999999999999999887654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.49 E-value=0.0043 Score=45.60 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcccC
Q 026565 13 FSLKFSRLFLRRRLSTLQWMAIVLLAVGTTTSQVKG 48 (237)
Q Consensus 13 ~tall~~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~ 48 (237)
++++++++++||++++.||.++.++.+|+......+
T Consensus 70 ~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999987654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.12 E-value=0.0035 Score=48.10 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhcccC
Q 026565 10 PFHFSLKFSRLFLRRRLSTLQWMAIVLLAVGTTTSQVKG 48 (237)
Q Consensus 10 p~~~tall~~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~ 48 (237)
|+ +++++++++++|++++.||++++++.+|+.+.+..+
T Consensus 68 pv-~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 68 IV-LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HH-HHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HH-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44 899999999999999999999999999999987654
No 5
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=30.26 E-value=53 Score=28.93 Aligned_cols=90 Identities=10% Similarity=0.101 Sum_probs=48.1
Q ss_pred ChhHH----HHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhhh--cccCCCccccCcccccchhHHHHHHHHHHHHHH
Q 026565 8 TRPFH----FSLKFSRLFLRRRLST----LQWMAIVLLAVGTTTS--QVKGCGEALCDSLFAAPIQGYLLGVLSACLSAL 77 (237)
Q Consensus 8 ~~p~~----~tall~~~~L~~~ls~----~qw~al~ll~~Gv~l~--~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~sa~ 77 (237)
+.++| +.++...+++++|..+ .+--.+.+.+.|..+. .+......+.-..+...-...+-..+++..+++
T Consensus 164 s~vVH~~gG~aaL~~a~~LG~R~g~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~l 243 (385)
T 1u7g_A 164 GTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAIL 243 (385)
T ss_dssp TTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecchHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhccchhHhHHHHHHHHHHHHHH
Confidence 57788 7888889999998742 1233455555555443 122111100000111112233445567777888
Q ss_pred HHHHHHHHhhcCCchhHHHH
Q 026565 78 AGVYTEFLMKKNNDSLYWQN 97 (237)
Q Consensus 78 a~vy~E~~~K~~~~~~~~~n 97 (237)
+....|+..+++-+....+|
T Consensus 244 ~~~~~~~~~~gk~~~~~~~n 263 (385)
T 1u7g_A 244 GWIFGEWALRGLPSLLGACS 263 (385)
T ss_dssp HHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHH
Confidence 88888988655433333333
No 6
>1vpu_A VPU protein, VPU(39-81); HIV, AIDS; NMR {Human immunodeficiency virus 1} SCOP: g.34.1.1 PDB: 2k7y_A
Probab=18.02 E-value=21 Score=21.48 Aligned_cols=14 Identities=43% Similarity=0.465 Sum_probs=11.1
Q ss_pred chhhhhhhhhccCC
Q 026565 224 DSLREVSVERRTDS 237 (237)
Q Consensus 224 ~~~~~~~~~~~~~~ 237 (237)
++++++-+||..||
T Consensus 4 d~li~RIreRaEDS 17 (45)
T 1vpu_A 4 DRLIDRITERAEDS 17 (45)
T ss_dssp HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhcC
Confidence 57788889988775
No 7
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=15.11 E-value=5.9e+02 Score=22.35 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=44.0
Q ss_pred ChhHH----HHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHhhhc--ccCCCccccCcccccchhHHHHHHHHHHHHH
Q 026565 8 TRPFH----FSLKFSRLFLRRRLST-----LQWMAIVLLAVGTTTSQ--VKGCGEALCDSLFAAPIQGYLLGVLSACLSA 76 (237)
Q Consensus 8 ~~p~~----~tall~~~~L~~~ls~-----~qw~al~ll~~Gv~l~~--~~~~~~~~~~~~~~~~~~G~~~~l~~a~~sa 76 (237)
++++| +.++...++|+||..+ .+--++.+.+.|..+.= +........ .+...-...+=+.+++..++
T Consensus 142 s~vVH~~gG~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~Gl~--~~~~~~~a~~NT~lAaaag~ 219 (407)
T 3b9w_A 142 SIAIHAFGAYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATAIV--PFEQMPQTIVNTLLALCGAT 219 (407)
T ss_dssp TTTTHHHHHHHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTS--CGGGHHHHHHHHHHHHHHHH
T ss_pred ceEEEeCchHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhhhc--cchhhHHHHHHhHHHHHHHH
Confidence 67888 7788888999987432 22445666666665542 221111000 01112223444556777777
Q ss_pred HHHHHHHHHhhcC
Q 026565 77 LAGVYTEFLMKKN 89 (237)
Q Consensus 77 ~a~vy~E~~~K~~ 89 (237)
++....++..++.
T Consensus 220 l~~~~~~~~~~~g 232 (407)
T 3b9w_A 220 LATYFLSALFHKG 232 (407)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCC
Confidence 8888778764433
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=12.65 E-value=2.1e+02 Score=15.77 Aligned_cols=15 Identities=13% Similarity=0.381 Sum_probs=9.0
Q ss_pred HHHHHHHHHcCCCcc
Q 026565 174 LTMVLSVYLFNFKPT 188 (237)
Q Consensus 174 ~s~lls~~~f~~~~t 188 (237)
+.+++..++|.|||.
T Consensus 14 lgiiFFAI~FRePPr 28 (32)
T 3arc_T 14 IALFFFAIFFREPPR 28 (32)
T ss_dssp HHHHHHHHHTSCCCC
T ss_pred HHHHHHhhhhcCCCC
Confidence 444555666777764
No 9
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=9.83 E-value=34 Score=17.09 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=8.8
Q ss_pred CCCCcCcCCCchhhhhhhh
Q 026565 214 DIPSTAKAAPDSLREVSVE 232 (237)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~ 232 (237)
|+|...+++-.+-.|+-.+
T Consensus 1 dlp~aRk~SLqRFleKRk~ 19 (21)
T 3ogl_Q 1 ELPIARRASLHRFLEKRKD 19 (26)
T ss_pred CcchhHHHHHHHHHHHhhc
Confidence 4555555544444444333
No 10
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=8.91 E-value=2.7e+02 Score=15.63 Aligned_cols=10 Identities=10% Similarity=0.471 Sum_probs=6.1
Q ss_pred HHHHHhHhcc
Q 026565 197 ICMMSLHMYF 206 (237)
Q Consensus 197 lV~~s~~lY~ 206 (237)
+++.|+++|-
T Consensus 21 ~~lg~tflyw 30 (40)
T 2l9u_A 21 MMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHH
T ss_pred HHhCceeEEE
Confidence 3446777774
Done!