Query 026565
Match_columns 237
No_of_seqs 125 out of 786
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 16:35:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026565.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026565hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 51.3 33 0.0024 28.0 8.8 87 8-94 162-258 (383)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 36.5 86 0.0063 24.1 14.8 19 25-43 18-36 (447)
3 d1vpua_ g.34.1.1 (A:) HIV-1 VP 18.7 9.5 0.00069 21.4 -0.4 14 224-237 4-17 (45)
4 d1t95a1 a.5.8.1 (A:87-161) Hyp 6.8 90 0.0065 19.1 1.4 17 216-232 34-50 (75)
5 d2h8pc1 f.14.1.1 (C:22-78) Pot 6.5 1E+02 0.0074 17.7 1.5 20 192-211 14-33 (57)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 6.3 2E+02 0.015 14.7 2.8 10 174-183 27-36 (37)
7 d2p7tc1 f.14.1.1 (C:86-119) Po 4.6 2.5E+02 0.018 13.8 2.3 13 29-41 3-15 (34)
8 d1xmeb2 f.17.2.1 (B:3-36) Bact 3.7 3E+02 0.022 13.4 2.2 10 195-204 23-32 (34)
9 d2axth1 f.23.33.1 (H:2-65) Pho 3.4 4.2E+02 0.031 15.3 2.7 28 59-86 26-53 (64)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 3.2 3.3E+02 0.024 12.9 3.5 12 176-187 16-27 (30)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=51.31 E-value=33 Score=28.05 Aligned_cols=87 Identities=10% Similarity=0.099 Sum_probs=43.8
Q ss_pred ChhHH----HHHHHHHHHhcCCCCHH----HHHHHHHHHHHHhhh--cccCCCccccCcccccchhHHHHHHHHHHHHHH
Q 026565 8 TRPFH----FSLKFSRLFLRRRLSTL----QWMAIVLLAVGTTTS--QVKGCGEALCDSLFAAPIQGYLLGVLSACLSAL 77 (237)
Q Consensus 8 ~~p~~----~tall~~~~L~~~ls~~----qw~al~ll~~Gv~l~--~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~sa~ 77 (237)
+.|+| ++++....++++|..+. +--.+.+.+.|..+. .+......+..........-..-...++..+++
T Consensus 162 s~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~~ 241 (383)
T d1u7ga_ 162 GTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAIL 241 (383)
T ss_dssp TTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeecccHHHHHHHHhcCCcccccccccccCChhhhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHHHHH
Confidence 67888 88888889998887531 112333334444333 111111100011111112223344556666777
Q ss_pred HHHHHHHHhhcCCchhH
Q 026565 78 AGVYTEFLMKKNNDSLY 94 (237)
Q Consensus 78 a~vy~E~~~K~~~~~~~ 94 (237)
+..+.++..+++.+..+
T Consensus 242 ~~~~~~~~~~~k~~~~~ 258 (383)
T d1u7ga_ 242 GWIFGEWALRGLPSLLG 258 (383)
T ss_dssp HHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHhcCCCCHHH
Confidence 77788887766543333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=36.55 E-value=86 Score=24.08 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 026565 25 RLSTLQWMAIVLLAVGTTT 43 (237)
Q Consensus 25 ~ls~~qw~al~ll~~Gv~l 43 (237)
++.+.||..+++++.+-..
T Consensus 18 ~~~~~~w~i~~~~~~~~~~ 36 (447)
T d1pw4a_ 18 TYRRLRWQIFLGIFFGYAA 36 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 3455678777777666444
No 3
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=18.67 E-value=9.5 Score=21.45 Aligned_cols=14 Identities=43% Similarity=0.465 Sum_probs=10.9
Q ss_pred chhhhhhhhhccCC
Q 026565 224 DSLREVSVERRTDS 237 (237)
Q Consensus 224 ~~~~~~~~~~~~~~ 237 (237)
|+++++-+||-.||
T Consensus 4 drLi~RIrERAEDS 17 (45)
T d1vpua_ 4 DRLIDRITERAEDS 17 (45)
T ss_dssp HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcccC
Confidence 57888888887764
No 4
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.83 E-value=90 Score=19.09 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=13.3
Q ss_pred CCcCcCCCchhhhhhhh
Q 026565 216 PSTAKAAPDSLREVSVE 232 (237)
Q Consensus 216 ~~~~~~~~~~~~~~~~~ 232 (237)
|.|....|..+||.|.+
T Consensus 34 P~T~~P~p~~rIE~Al~ 50 (75)
T d1t95a1 34 PRTNAPHPPSRIERALE 50 (75)
T ss_dssp TTTTBCCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 66667788889998875
No 5
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.50 E-value=1e+02 Score=17.75 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhHhccCCCCC
Q 026565 192 FLGIIICMMSLHMYFAPPGM 211 (237)
Q Consensus 192 ~vG~~lV~~s~~lY~~~~~~ 211 (237)
++-..+++.|..+|......
T Consensus 14 ~~~i~i~~~s~~~y~~E~~~ 33 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERGA 33 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 34445556677777654433
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.26 E-value=2e+02 Score=14.73 Aligned_cols=10 Identities=40% Similarity=0.972 Sum_probs=4.2
Q ss_pred HHHHHHHHHc
Q 026565 174 LTMVLSVYLF 183 (237)
Q Consensus 174 ~s~lls~~~f 183 (237)
+++++|.++|
T Consensus 27 l~vLFssYfF 36 (37)
T d2axtl1 27 LALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 3344444443
No 7
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=4.55 E-value=2.5e+02 Score=13.80 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q 026565 29 LQWMAIVLLAVGT 41 (237)
Q Consensus 29 ~qw~al~ll~~Gv 41 (237)
-+.++++.+++|+
T Consensus 3 grcvavvvmvagi 15 (34)
T d2p7tc1 3 GRCVAVVVMVAGI 15 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceEEEEEEEEecc
Confidence 3455566666655
No 8
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=3.71 E-value=3e+02 Score=13.42 Aligned_cols=10 Identities=10% Similarity=0.421 Sum_probs=3.9
Q ss_pred HHHHHHHhHh
Q 026565 195 IIICMMSLHM 204 (237)
Q Consensus 195 ~~lV~~s~~l 204 (237)
+..|+++...
T Consensus 23 mlfvfialia 32 (34)
T d1xmeb2 23 MLFVFIALIA 32 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3334444333
No 9
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.36 E-value=4.2e+02 Score=15.29 Aligned_cols=28 Identities=18% Similarity=0.479 Sum_probs=19.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 026565 59 AAPIQGYLLGVLSACLSALAGVYTEFLM 86 (237)
Q Consensus 59 ~~~~~G~~~~l~~a~~sa~a~vy~E~~~ 86 (237)
..++.|+.+++.+.++.-+..+||..++
T Consensus 26 TTplMgv~m~Lf~vfl~iiLeiYNss~l 53 (64)
T d2axth1 26 TTPLMAVFMGLFLVFLLIILEIYNSTLI 53 (64)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 3467788888877777777777765543
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.18 E-value=3.3e+02 Score=12.95 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=6.2
Q ss_pred HHHHHHHcCCCc
Q 026565 176 MVLSVYLFNFKP 187 (237)
Q Consensus 176 ~lls~~~f~~~~ 187 (237)
..+-.++|.|||
T Consensus 16 lfffaiffrepp 27 (30)
T d2axtt1 16 LFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHTSCCC
T ss_pred HHHHHHHhcCCC
Confidence 333344566665
Done!