BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026566
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AGB|A Chain A, F218v Mutant Of The Substrate-Free Form Of Red Chlorophyll
Catabolite Reductase From Arabidopsis Thaliana
pdb|3AGB|B Chain B, F218v Mutant Of The Substrate-Free Form Of Red Chlorophyll
Catabolite Reductase From Arabidopsis Thaliana
pdb|3AGC|A Chain A, F218v Mutant Of The Substrate-Bound Red Chlorophyll
Catabolite Reductase From Arabidopsis Thaliana
pdb|3AGC|B Chain B, F218v Mutant Of The Substrate-Bound Red Chlorophyll
Catabolite Reductase From Arabidopsis Thaliana
Length = 276
Score = 207 bits (526), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 106/208 (50%), Positives = 148/208 (71%), Gaps = 9/208 (4%)
Query: 31 IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS SLVLILDL RKD
Sbjct: 72 IDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKD 131
Query: 91 LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
LVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R +SP+A M+++D E
Sbjct: 132 LVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAVSPTASMLKIDAE---- 187
Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRDGLIKNKTI 207
E +L+ I+ +HV P AK+V+ +WL +C VGE ++ LE+RD + K+I
Sbjct: 188 --EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSI 245
Query: 208 EIDLGSSFPRLFGPQVASRVLGEIQKVF 235
E DL FPR+FG +V+SRV+ I++ F
Sbjct: 246 EDDLDLQFPRMFGEEVSSRVVHAIKEAF 273
>pdb|2ZXL|A Chain A, Crystal Structure Of Red Chlorophyll Catabolite Reductase
From Arabidopsis Thaliana
pdb|2ZXL|B Chain B, Crystal Structure Of Red Chlorophyll Catabolite Reductase
From Arabidopsis Thaliana
Length = 285
Score = 206 bits (524), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 106/208 (50%), Positives = 147/208 (70%), Gaps = 9/208 (4%)
Query: 31 IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS SLVLILDL RKD
Sbjct: 81 IDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKD 140
Query: 91 LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
LVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R SP+A M+++D E
Sbjct: 141 LVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAE---- 196
Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRDGLIKNKTI 207
E +L+ I+ +HV P AK+V+ +WL +C VGE ++ LE+RD + K+I
Sbjct: 197 --EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSI 254
Query: 208 EIDLGSSFPRLFGPQVASRVLGEIQKVF 235
E DL FPR+FG +V+SRV+ I++ F
Sbjct: 255 EDDLDLQFPRMFGEEVSSRVVHAIKEAF 282
>pdb|3AGA|A Chain A, Crystal Structure Of Rcc-Bound Red Chlorophyll Catabolite
Reductase From Arabidopsis Thaliana
pdb|3AGA|B Chain B, Crystal Structure Of Rcc-Bound Red Chlorophyll Catabolite
Reductase From Arabidopsis Thaliana
Length = 276
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/208 (50%), Positives = 147/208 (70%), Gaps = 9/208 (4%)
Query: 31 IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS SLVLILDL RKD
Sbjct: 72 IDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKD 131
Query: 91 LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
LVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R SP+A M+++D E
Sbjct: 132 LVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKIDAE---- 187
Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRDGLIKNKTI 207
E +L+ I+ +HV P AK+V+ +WL +C VGE ++ LE+RD + K+I
Sbjct: 188 --EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKSFRRKSI 245
Query: 208 EIDLGSSFPRLFGPQVASRVLGEIQKVF 235
E DL FPR+FG +V+SRV+ I++ F
Sbjct: 246 EDDLDLQFPRMFGEEVSSRVVHAIKEAF 273
>pdb|2ZXK|A Chain A, Crystal Structure Of Semet-Red Chlorophyll Catabolite
Reductase
pdb|2ZXK|B Chain B, Crystal Structure Of Semet-Red Chlorophyll Catabolite
Reductase
Length = 285
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 145/208 (69%), Gaps = 9/208 (4%)
Query: 31 IDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKD 90
IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS SLVLILDL RKD
Sbjct: 81 IDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKD 140
Query: 91 LVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETG 150
LVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R SP+A +++D E
Sbjct: 141 LVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASXLKIDAE---- 196
Query: 151 AGESTRLDYIITNHVHPVAKQVIGIWLNQCACGGRH---VGESDKAYLEKRDGLIKNKTI 207
E +L+ I+ +HV P AK+V+ +WL +C VGE ++ LE+RD + K+I
Sbjct: 197 --EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERXELERRDKSFRRKSI 254
Query: 208 EIDLGSSFPRLFGPQVASRVLGEIQKVF 235
E DL FPR FG +V+SRV+ I++ F
Sbjct: 255 EDDLDLQFPRXFGEEVSSRVVHAIKEAF 282
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 86 SPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIM 140
SP++ L+P + ++++D LEK P+ F+ + +L C++SP I+
Sbjct: 174 SPQESGALYPHDTHLLHNTSQVDVENPDLEKFPK----FAKAPFLSCILSPGEIL 224
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 86 SPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIM 140
SP++ L+P + ++++D LEK P+ F+ + +L C++SP I+
Sbjct: 161 SPQESGALYPHDTHLLHNTSQVDVENPDLEKFPK----FAKAPFLSCILSPGEIL 211
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 86 SPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIM 140
SP++ L+P + ++++D LEK P+ F+ + +L C++SP I+
Sbjct: 161 SPQESGALYPHDTHLLHNTSQVDVENPDLEKFPK----FAKAPFLSCILSPGEIL 211
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 86 SPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIM 140
SP++ L+P + ++++D LEK P+ F+ + +L C++SP I+
Sbjct: 165 SPQESGALYPHDTHLLHNTSQVDVENPDLEKFPK----FAKAPFLSCILSPGEIL 215
>pdb|2C5Q|A Chain A, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|B Chain B, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|C Chain C, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|D Chain D, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|E Chain E, Crystal Structure Of Yeast Yer010cp
pdb|2C5Q|F Chain F, Crystal Structure Of Yeast Yer010cp
Length = 240
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
Query: 42 ELPTGAAL-NITSLSAYLNSST------------DAPNLLIELIQSSPSSLVLILDLSPR 88
+PTG N+T++S NSS D P + I S P + +L+L L P
Sbjct: 24 NIPTGGYFPNLTAISPPQNSSIVGTAYTVLFAPIDDPRPAVNYIDSVPPNSILVLALEPH 83
Query: 89 KDLVLHP 95
HP
Sbjct: 84 LQSQFHP 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,817,473
Number of Sequences: 62578
Number of extensions: 275176
Number of successful extensions: 619
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 12
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)