Query 026566
Match_columns 237
No_of_seqs 36 out of 38
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 09:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02581 red chlorophyll catab 100.0 5E-107 1E-111 726.7 15.6 211 23-237 54-267 (267)
2 PF06405 RCC_reductase: Red ch 100.0 3E-104 5E-109 706.2 9.7 209 23-235 44-255 (255)
3 PRK13248 phycoerythrobilin:fer 98.9 5.3E-09 1.2E-13 94.6 10.3 181 27-230 50-248 (253)
4 PRK13249 phycoerythrobilin:fer 98.6 1.3E-07 2.8E-12 85.7 9.1 183 31-230 58-252 (257)
5 PRK13247 dihydrobiliverdin:fer 98.6 3.6E-07 7.9E-12 81.9 9.6 184 21-230 25-226 (238)
6 PRK13250 phycoerythrobilin:fer 98.4 1.4E-06 3.1E-11 78.7 8.8 174 29-231 42-236 (248)
7 PF05996 Fe_bilin_red: Ferredo 98.3 5.5E-07 1.2E-11 79.4 4.6 176 32-230 34-224 (228)
8 PRK02816 phycocyanobilin:ferre 98.3 3.2E-06 7E-11 76.0 7.9 172 30-230 51-236 (243)
9 PRK13246 dihydrobiliverdin:fer 98.2 5.5E-06 1.2E-10 74.6 8.2 186 17-231 21-226 (236)
10 PF09679 TraQ: Type-F conjugat 54.3 14 0.0003 29.9 2.9 30 168-204 54-83 (93)
11 PF14231 GXWXG: GXWXG protein 27.7 28 0.0006 25.8 0.7 24 27-50 8-31 (60)
12 PF10691 DUF2497: Protein of u 26.6 65 0.0014 24.6 2.6 24 152-179 30-53 (73)
13 PF14160 FAM110_C: Centrosome- 26.2 68 0.0015 26.5 2.8 79 96-181 21-108 (111)
14 PRK13727 conjugal transfer pil 25.5 34 0.00073 27.0 0.9 27 167-200 53-79 (80)
15 PHA02046 hypothetical protein 23.8 1.2E+02 0.0027 24.8 3.8 67 165-234 13-84 (99)
16 PF06543 Lac_bphage_repr: Lact 22.7 69 0.0015 23.3 2.0 22 176-197 20-41 (49)
17 TIGR02741 TraQ type-F conjugat 20.9 67 0.0015 25.4 1.7 27 167-200 53-79 (80)
No 1
>PLN02581 red chlorophyll catabolite reductase
Probab=100.00 E-value=4.8e-107 Score=726.66 Aligned_cols=211 Identities=61% Similarity=1.054 Sum_probs=206.6
Q ss_pred cccc---CCCccceeeeccccccCCCCccccceeeheecccCCCCchhhhhhhhcCCceEEEEeecCCccCCCCCchhHH
Q 026566 23 LMIM---DACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQ 99 (237)
Q Consensus 23 L~~~---~gs~IDf~l~SWlh~~lP~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl~LDl~PRkDLvl~pdYl~ 99 (237)
|.++ +||+|||||||||||+||+||++|||||++|||||||||||+|||||||||||||||||+||||||+||||||
T Consensus 54 l~irsG~~~S~IDf~l~SWlh~~lp~ggalnItsL~~~L~~stdaPhf~~Eliq~sptslv~~LDl~PRkDLvl~pdYl~ 133 (267)
T PLN02581 54 LHIRSGAQGSKIDFVLGSWLHCKLPTGGALNITSLSAFLNPSTDAPHFLVELIQSSPTSLVLILDLPPRKDLVLHPDYLK 133 (267)
T ss_pred EEEecCCCCCceeEEeehhhcCCCCCCccccHHHHHhHhccCCCCCceeeeeeccCCceEEEEeccCCccccccCHHHHH
Confidence 5666 4559999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccchhHHHHHhhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHHhh
Q 026566 100 TFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQ 179 (237)
Q Consensus 100 ~yYE~t~ld~~Rq~lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL~~ 179 (237)
||||||++|+|||+|+|+||+|||+||||||||++|||||||+|+| ++|++++|||||++||+|+||+||++||++
T Consensus 134 ~yYe~t~ld~~Rq~l~k~pe~~pY~S~SLyvRs~~SPTAi~~~i~~----~~~~~~~leeiv~~~i~p~a~evl~~WL~~ 209 (267)
T PLN02581 134 TYYEDTQLDAHRQKLEKLPQVQPYVSPSLYVRSVVSPTAILVKIDC----EEGGEERLEEIVRDQVAPVAKEVLEIWLDS 209 (267)
T ss_pred HHhcccccHHHHHHHHhCcccCccccccceeeeccCCceEEEEeec----CCCccccHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 888999999999999999999999999999
Q ss_pred hhcCCcccChhhHHHHHHhhhhhhhhceeeccCCCCCcccChhHHHHHHHHHHhHhcC
Q 026566 180 CACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 237 (237)
Q Consensus 180 c~~~~~~v~e~Er~~L~kRD~~Ir~k~iE~DL~~nlPRlFG~evadRvv~air~~f~~ 237 (237)
|+|+++||+|+||++|+|||++||+|+||+||+||||||||||+|||||++|||+|++
T Consensus 210 c~~~~~~~~e~Er~~l~kRD~~Ir~k~iE~Dl~~nlprlFGqevadRvv~air~~~~~ 267 (267)
T PLN02581 210 CACLGREMEEEERAYLEKRDRMIRSKSVEVDLSSNMPRLFGQEVADRVVAAIRKAFRV 267 (267)
T ss_pred hccCCccCcHHHHHHHHHHHHHHHhhceeechhhhhhhHhChHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999985
No 2
>PF06405 RCC_reductase: Red chlorophyll catabolite reductase (RCC reductase); InterPro: IPR009439 This family consists of several red chlorophyll catabolite reductase (RCC reductase) proteins. Red chlorophyll catabolite (RCC) reductase (RCCR) and pheophorbide (Pheide) a oxygenase (PaO) catalyse the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of Pheide a to a primary fluorescent catabolite (pFCC) [].; PDB: 2ZXK_A 3AGA_B 3AGC_B 2ZXL_A 3AGB_A.
Probab=100.00 E-value=2.5e-104 Score=706.20 Aligned_cols=209 Identities=58% Similarity=0.993 Sum_probs=182.9
Q ss_pred cccc---CCCccceeeeccccccCCCCccccceeeheecccCCCCchhhhhhhhcCCceEEEEeecCCccCCCCCchhHH
Q 026566 23 LMIM---DACQIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQ 99 (237)
Q Consensus 23 L~~~---~gs~IDf~l~SWlh~~lP~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl~LDl~PRkDLvl~pdYl~ 99 (237)
|.++ +||+|||||||||||++|+||++|||||++||||+||||||+||||||||++|||||||+||||||+|||||+
T Consensus 44 l~vrsG~~~s~IDf~l~SWlh~~lP~~g~lnItsL~v~L~~stdaPhf~~Eliq~sp~~lv~~lDl~PRkDLvl~pdYl~ 123 (255)
T PF06405_consen 44 LHVRSGAEGSPIDFMLGSWLHCKLPTGGALNITSLSVFLNPSTDAPHFLFELIQSSPTSLVFYLDLPPRKDLVLHPDYLD 123 (255)
T ss_dssp EEEEEB-TTSSEEEEEEEEEEEE-TTS-EEEEEEEEEEE-TT--S--EEEEEEESSSSEEEEEEE---SS-TTT-HHHHH
T ss_pred EEEecCCCCCceeEEEeeeeeecCCCCceeeeheeeeeecccCCCCcEEEEEeecCCCcEEEEEecCcccccccCHHHHH
Confidence 4666 4556999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccchhHHHHHhhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHHhh
Q 026566 100 TFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQ 179 (237)
Q Consensus 100 ~yYE~t~ld~~Rq~lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL~~ 179 (237)
||||+|+||+|||+|+++||+|||+||||||||++||||+||+|+| ++|++++|||||++||+|+||+||++|||+
T Consensus 124 ~yYe~t~ld~~R~~le~~pe~~pY~S~SLyvRs~~SPTAi~~~i~~----~~g~~~~leeIv~~~i~p~A~~vl~~WL~~ 199 (255)
T PF06405_consen 124 RYYEDTQLDKHRQLLEKLPEFQPYVSSSLYVRSVVSPTAILYSIDC----EEGGEERLEEIVRDHIAPVAKEVLDIWLDS 199 (255)
T ss_dssp HHTTTTTCHHHHHHHHHSTTEEE---S-HHHHHHS-TT-EEEEEE-----SS--HHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHhCcccCcccCcchhheeccCCceEEEEecc----cccchhhHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999999999999
Q ss_pred hhcCCcccChhhHHHHHHhhhhhhhhceeeccCCCCCcccChhHHHHHHHHHHhHh
Q 026566 180 CACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 235 (237)
Q Consensus 180 c~~~~~~v~e~Er~~L~kRD~~Ir~k~iE~DL~~nlPRlFG~evadRvv~air~~f 235 (237)
|+|++++|+|+||++|+|||++||+|+||+||+||||||||||+|||||++|||+|
T Consensus 200 c~~~~~~v~e~Er~~L~~RD~~ir~~~iE~Dl~~~~prlFG~evadrvv~ai~~~f 255 (255)
T PF06405_consen 200 CADEAREVEEEERAALAKRDRMIRRKSIEVDLSSNLPRLFGQEVADRVVAAIRGAF 255 (255)
T ss_dssp TTSSSSTS-HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHHHhhceeeeccccchhhhhChHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999998
No 3
>PRK13248 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=98.94 E-value=5.3e-09 Score=94.58 Aligned_cols=181 Identities=17% Similarity=0.291 Sum_probs=141.0
Q ss_pred CCCccceeeeccccccCC----------CCccccceeeheecccCCCCchhhhhhhhcCCceEEEEeecCCccCCCCCch
Q 026566 27 DACQIDFILGSWVHSELP----------TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPD 96 (237)
Q Consensus 27 ~gs~IDf~l~SWlh~~lP----------~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl~LDl~PRkDLvl~pd 96 (237)
..++..-++.||.-.+.| .|.+++|.|..+|=+|..|-|-|+.-|+.+.=.+ ..||||=|=..+- .+
T Consensus 50 ~~~~~~~~~~sw~~~~~~~~R~~R~~~i~g~~LqVLn~V~fP~p~yDLPiFGaDlV~~~~~~-~aIlDlqPl~~~~--~~ 126 (253)
T PRK13248 50 KKSKKNVNLSTWGVTHKKRIQFARAVCINSPNYSVLNFLIIPNTIYNVPFFGVDFVSLPNSH-LLVLDFQPSLKIQ--NQ 126 (253)
T ss_pred cccCCceEEEeeecccChHHHHHhhheecCCCCeEEEEEecCCCCCCCCccceeeeccCCCc-EEEEECCccccCh--HH
Confidence 345689999999973445 6789999999999999999999999999854445 5589999977332 47
Q ss_pred hHHHhhcccchhHHHHHhhhCC-------CcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhH
Q 026566 97 YLQTFYESTRLDEYRQMLEKVP-------EVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVA 169 (237)
Q Consensus 97 Yl~~yYE~t~ld~~Rq~lek~P-------e~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A 169 (237)
|.++||+...-=.. +.-+.+| +..+|+ ||-.+..+... ++++ .++|++.+-+..
T Consensus 127 Y~~~~~~~L~~l~~-~~~~~lP~~g~~~~e~~~~F----------Sp~~Lf~R~~~----~~e~----~~~ie~~~~~af 187 (253)
T PRK13248 127 YNNELLEKLIKLKN-HCHSSLPLAEKMSADVARFF----------SPGVIWSKLPK----EERS----DFLIENQLYTSF 187 (253)
T ss_pred HHHHHHhhccchhh-hhHhhCCCCCcCcchhHhhC----------CCceEEEecCC----cccc----hhhHHHHHHHHH
Confidence 99999998755432 3457889 666666 55556666665 2222 256777799999
Q ss_pred HHHHHHHHhhhhcCCcccChhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHH
Q 026566 170 KQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGE 230 (237)
Q Consensus 170 ~evl~~WL~~c~~~~~~v~e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~a 230 (237)
++-|++|++- +..+.+++.++.+.+.++..--=.-..|.|++.-| -|+||+|=|||.++.
T Consensus 188 ~~YL~~y~~l-~~~a~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~eWae~yI~~ 248 (253)
T PRK13248 188 KEYLDLYLEI-LFESKEVNIGLQKELINGQNNYLNYRRDNDPARPMLSSLFGKEFTESLINE 248 (253)
T ss_pred HHHHHHHHHH-HHhCCCCCcccHHHHHHHHHHHHHHHHHcCcHHHHHHHHcChHHHHHHHHh
Confidence 9999999998 67778877766666666666666778899999998 999999999999875
No 4
>PRK13249 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=98.64 E-value=1.3e-07 Score=85.75 Aligned_cols=183 Identities=16% Similarity=0.229 Sum_probs=135.0
Q ss_pred cceeeecccc---------ccCCC-CccccceeeheecccCCCCchhhhhhhhcCCceEEEEeecCCccCCCCCchhHHH
Q 026566 31 IDFILGSWVH---------SELPT-GAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQT 100 (237)
Q Consensus 31 IDf~l~SWlh---------~~lP~-G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl~LDl~PRkDLvl~pdYl~~ 100 (237)
.--...+|.- ++.=. |.++.|.|..+|=+|..|.|-|+.-|+. .|..-.+.+|+=|=.+- .|+|.++
T Consensus 58 ~~i~~~~~~~~~~~fRk~r~~~~~~G~~lqVLn~V~fP~p~yDLPiFGaDlv~-~~~~~~lalDlqPl~~~--~~~~~~~ 134 (257)
T PRK13249 58 VKVTTATWACKTEKIRQVRAACVEAGEAASVLNFVINPSNRFDLPFFGADLVT-LPNGHLLALDLQPALKT--DEIHTQH 134 (257)
T ss_pred ceEEEeeeccCChHHHHHHHHHhhcCCCcEEEEEEecCCcCCCCCccceeeee-cCCceEEEEecCccccc--cHHHHHH
Confidence 5556667754 22223 7899999999999999999999999987 77776677999996532 5999999
Q ss_pred hhcccchhHHHHH-hhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHHhh
Q 026566 101 FYESTRLDEYRQM-LEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQ 179 (237)
Q Consensus 101 yYE~t~ld~~Rq~-lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL~~ 179 (237)
|++...-. .+. -+++|.--.-.+ =.+..+||-.+..+... ++++. ..|...|.|.-++-|+.|++-
T Consensus 135 y~~~L~~~--~~~~~~~lP~~g~i~~---e~~~fFSp~~lf~Rp~~----~~e~~----~~~~~~l~~AF~~YL~~~~~l 201 (257)
T PRK13249 135 VWERLMPI--FEHWQSKLPSGGPIPE---EAQPYFSPGFLWTRLPL----GEEGD----NLISEVIRPAFDEYLNLYLDL 201 (257)
T ss_pred HHHHHHHH--HHhhHHhCCCcCCccc---hhhhcCCCceEEEecCC----ccchh----HHHHHHHHHHHHHHHHHHHHH
Confidence 99887332 333 344555432211 11233477777788776 33332 345556899999999999998
Q ss_pred hhcCCcccChhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHH
Q 026566 180 CACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGE 230 (237)
Q Consensus 180 c~~~~~~v~e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~a 230 (237)
+..+.+++.++...+.+...--=.-..|.|++.-| -|+||+|-|+|.++.
T Consensus 202 -~~~a~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~eWae~yi~~ 252 (257)
T PRK13249 202 -VEEAKPVSKERAFKLLEGQKRYTSYRAEKDPARGMLTRFHGSEWTESYIHN 252 (257)
T ss_pred -HHhCCCCChhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHhCHHHHHHHHHh
Confidence 67888887777777777666666778999999998 999999999999875
No 5
>PRK13247 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional
Probab=98.57 E-value=3.6e-07 Score=81.90 Aligned_cols=184 Identities=18% Similarity=0.243 Sum_probs=130.0
Q ss_pred ccccccCCCccceeeeccccccCC-----------CCccccceeeheecccCCCCchhhhhhhhcCCceEEE--EeecCC
Q 026566 21 NNLMIMDACQIDFILGSWVHSELP-----------TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVL--ILDLSP 87 (237)
Q Consensus 21 ~~L~~~~gs~IDf~l~SWlh~~lP-----------~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl--~LDl~P 87 (237)
.+|.-..|.....++.+|+++. | -|.+++|.|..+|=+|..|.|=|++-|+. .|.+-++ |+|+=|
T Consensus 25 ~~l~~~~~~~~~~~i~n~~~q~-~~fRk~r~~~~~~G~~lqVLn~V~fP~~~yDLPifG~Dlv~-~~~~~~laAIlDlqP 102 (238)
T PRK13247 25 AGLEECVSEKGNAVIRSWLWQV-PGFRRWRVTRLDAGDSLQVLNSVAYPDYNYDLPLMGIDLLW-FGKKQKLVAVLDFQP 102 (238)
T ss_pred hhHhhhhcccCceEEEeeeecC-chHHHHHHHHhhcCCCcEEEEEEecCCCCCCCCccceeEee-cCCCceEEEEEecCC
Confidence 3333334455589999998642 4 37899999999999999999999999998 5644433 699999
Q ss_pred ccCCCCCchhHHHhhcccchhHHHH---HhhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhc
Q 026566 88 RKDLVLHPDYLQTFYESTRLDEYRQ---MLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNH 164 (237)
Q Consensus 88 RkDLvl~pdYl~~yYE~t~ld~~Rq---~lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~ 164 (237)
=. -+.+|.++||+.. ....+ .+...-+.++|- ....+||-.+..+-.. +.+.+.
T Consensus 103 l~---~~~~~~~~y~~~L--~~l~~~~~~~~~~~~~~~~d-----~~~~FSp~~lf~R~~~-------------~~~~~~ 159 (238)
T PRK13247 103 LV---QDKDYLDRYFEGL--KSLKERFPDLNSEETMRFYD-----PNQYFSPWLLFCKGGA-------------ETATNS 159 (238)
T ss_pred CC---cchhhhHHHHHHH--HHHHHhhHhhcCCCCCCCcc-----ccccCCCceEEeeCCc-------------HHHHHH
Confidence 54 4569999999774 43333 222222222221 1223466666655432 234566
Q ss_pred chhhHHHHHHHHHhhhhcCCcccC-hhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHH
Q 026566 165 VHPVAKQVIGIWLNQCACGGRHVG-ESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGE 230 (237)
Q Consensus 165 v~p~A~evl~~WL~~c~~~~~~v~-e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~a 230 (237)
+-+..++-|+.|++- ++.+.+++ ..+.+.+.+...--=.-..|.|++.-| -|+||+|-|+|.++.
T Consensus 160 l~~af~~YL~~~~~~-~~~a~~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~~L~~~FG~~Wae~yi~~ 226 (238)
T PRK13247 160 LPKAFSAFLKAYWQL-HDNAKKITSTIEIQEVVQLQIDYDIYSAERDPAHGLFSSYFGKEWSERFLHE 226 (238)
T ss_pred HHHHHHHHHHHHHHH-HHhCCCCCChhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHcChHHHHHHHHh
Confidence 899999999999998 68888875 555555555555555677899999988 999999999999875
No 6
>PRK13250 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=98.39 E-value=1.4e-06 Score=78.65 Aligned_cols=174 Identities=18% Similarity=0.272 Sum_probs=130.2
Q ss_pred CccceeeeccccccCC-----------CCccccceeeheecccCCCCchhhhhhhhcCCceEEEEeecCCccCCCCCchh
Q 026566 29 CQIDFILGSWVHSELP-----------TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDY 97 (237)
Q Consensus 29 s~IDf~l~SWlh~~lP-----------~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtslvl~LDl~PRkDLvl~pdY 97 (237)
..-..++.+|+++. | -|.++.|.|..+|=+|..|.|=|++-|+. .|..-..++|+=|=.+ -.++|
T Consensus 42 ~~~~~~i~n~~~q~-~~fRk~r~~~~~~G~~lqVLn~V~fP~p~yDLPiFGaDlv~-~~~~~laalDlqPl~~--~~~~Y 117 (248)
T PRK13250 42 KQEEVVTTSYAFQS-PKLRQIRAAHVQGGSALQVLNFVIFPHLNYDLPFFGADLVT-LPGGHLIALDMQPLFR--DDPAY 117 (248)
T ss_pred cCCceEEeehhhcC-cHHHHHHHHHHhcCCCcEEEEEEecCCcCCCCCccceeeee-cCCceEEEEECCcccC--cHHHH
Confidence 44778999998642 4 37899999999999999999999999988 6655544599999754 12799
Q ss_pred HHHhhcccchhHHHHHhhhCCC--------cccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhH
Q 026566 98 LQTFYESTRLDEYRQMLEKVPE--------VRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVA 169 (237)
Q Consensus 98 l~~yYE~t~ld~~Rq~lek~Pe--------~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A 169 (237)
.++|++...-- .+...++|. +++|+ ||-.+..+... . +.|++.+-+..
T Consensus 118 ~~~~~~~l~~~--~~~~r~l~~wg~~~~~e~~~~F----------Sp~~lf~Rp~~--------~----~~~e~~lf~af 173 (248)
T PRK13250 118 QAKYTEPILPL--FNAHQAHLPWGGDFPEEAKPFF----------SPAFLWTRPQE--------T----EVVETRVFEAF 173 (248)
T ss_pred HHHHHHhhHHH--HhhhhhcCCccccCcchhHhhc----------CCceEEEecCC--------h----hHHHHHHHHHH
Confidence 99999976433 556666653 22344 66666666542 1 24455588889
Q ss_pred HHHHHHHHhhhhcCCcccChhh-HHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHHH
Q 026566 170 KQVIGIWLNQCACGGRHVGESD-KAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGEI 231 (237)
Q Consensus 170 ~evl~~WL~~c~~~~~~v~e~E-r~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~ai 231 (237)
++-|+.|++- +..+.+++..+ .+...+...--=.-..|.|++.-| -|+||+|-|||.++.+
T Consensus 174 ~~YL~~y~~~-~~~a~~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~eWae~yi~~~ 236 (248)
T PRK13250 174 KDYLQAYLDF-VEQAEAVTDSEQLAEILQAQLRYLRYRAEKDPARGMFTRFYGEEWTEEYIHGF 236 (248)
T ss_pred HHHHHHHHHH-HHhCCCCCChhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHhChHHHHHHHHhc
Confidence 9999999998 68888886666 444555555555678899999998 9999999999998753
No 7
>PF05996 Fe_bilin_red: Ferredoxin-dependent bilin reductase; InterPro: IPR009249 This family consists of several different but closely related proteins which include phycocyanobilin:ferredoxin oxidoreductase 1.3.7.5 from EC (PcyA), 15,16-dihydrobiliverdin:ferredoxin oxidoreductase 1.3.7.2 from EC (PebA) and phycoerythrobilin:ferredoxin oxidoreductase 1.3.7.3 from EC (PebB). Phytobilins are linear tetrapyrrole precursors of the light-harvesting prosthetic groups of the phytochrome photoreceptors of plants and the phycobiliprotein photosynthetic antennae of cyanobacteria, red algae, and cryptomonads. It is known that that phytobilins are synthesised from haem via the intermediacy of biliverdin IX alpha (BV), which is reduced subsequently by ferredoxin-dependent bilin reductases with different double-bond specificities [].; GO: 0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor, 0050897 cobalt ion binding, 0010024 phytochromobilin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3I8U_X 3AJH_A 3NB9_A 3I94_A 2DKE_A 3NB8_A 3F0M_A 3AJG_A 3I95_A 2D1E_A ....
Probab=98.33 E-value=5.5e-07 Score=79.38 Aligned_cols=176 Identities=19% Similarity=0.230 Sum_probs=115.2
Q ss_pred ceeeecccccc---------CC-CCccccceeeheecccCCCCchhhhhhhhcCCce-EEE-EeecCCccCCCCCchhHH
Q 026566 32 DFILGSWVHSE---------LP-TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSS-LVL-ILDLSPRKDLVLHPDYLQ 99 (237)
Q Consensus 32 Df~l~SWlh~~---------lP-~G~al~itsL~~~L~~stdaPhfl~ElIq~sPts-lvl-~LDl~PRkDLvl~pdYl~ 99 (237)
+..+.+|.++. += .|.+++|.|..+|=+++.|.|=|++.++. .|.. .++ |+|+-|= ..+.+|..
T Consensus 34 ~~~i~n~~~q~~~fRk~r~~~~~~g~~lqVL~~V~yP~~~ydLPiFG~Dlv~-~~~~~~~~ailDl~P~---~~~~~l~~ 109 (228)
T PF05996_consen 34 RLVIENWCYQSPKFRKLRLERADAGEGLQVLNCVIYPRPEYDLPIFGADLVA-FPGKRISAAILDLQPL---SQDRDLPE 109 (228)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEETTTEEEEEEEEEE-TTS---EEEEEEEE-ETTETEEEEEEEEE-S---STTSHHCH
T ss_pred hHHHHhhhhcccHHHHHHHHHhhcCCCcEEEEEEEcCCCCCCCCcccceeee-eCCccEEEEEEeCCCC---CCcccchH
Confidence 67777776442 22 37799999999999999999999999988 5545 555 7999885 55667999
Q ss_pred HhhcccchhHHHHH-hhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHHh
Q 026566 100 TFYESTRLDEYRQM-LEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLN 178 (237)
Q Consensus 100 ~yYE~t~ld~~Rq~-lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL~ 178 (237)
+|++.-.-= ++. .+..|+-+....-+. ..+||-.+..+-.. +.+.+.+-+..++-|+.|++
T Consensus 110 ~y~~~L~~l--~~~~~~~~~~~~~lp~w~~---~iFSp~~lf~r~~~-------------~~~~~~~~~af~~yl~~~~~ 171 (228)
T PF05996_consen 110 KYYSKLAPL--PEKYQELFPEPRKLPEWGN---QIFSPWCLFIRPSN-------------PEEEEQFLSAFKEYLQAYLE 171 (228)
T ss_dssp HHHHHHHTS--HHH-TT--SSBTSSSGGCG---SCS-TT-EEEEEES-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHhhccccccCchhHH---HhCCCceEEeeCCC-------------HHHHHHHHHHHHHHHHHHHH
Confidence 998854333 221 222333332222222 12266666666322 23445588999999999999
Q ss_pred hhhcCCccc-ChhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHH
Q 026566 179 QCACGGRHV-GESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGE 230 (237)
Q Consensus 179 ~c~~~~~~v-~e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~a 230 (237)
. +..+.++ +.++......+-.---+...|.|++-.+ -+.||+|-|+|.+..
T Consensus 172 ~-~~~a~~~~~~~~~~~~~~~Q~~Y~~~q~~nDptr~vL~~~FG~~wae~yi~~ 224 (228)
T PF05996_consen 172 L-VEQAEPVTDPERIAERLEAQHRYCQYQAENDPTRRVLEKAFGEEWAERYINE 224 (228)
T ss_dssp H-HHHHTCSB-HHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHH-HHHHHHHHHH
T ss_pred H-HHhCCCcCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhChHHHHHHHHH
Confidence 7 5666665 5666666666666666778889999988 999999999999875
No 8
>PRK02816 phycocyanobilin:ferredoxin oxidoreductase; Validated
Probab=98.25 E-value=3.2e-06 Score=76.01 Aligned_cols=172 Identities=16% Similarity=0.202 Sum_probs=121.0
Q ss_pred ccceeeeccccccCC-----------CCccccceeeheecccCCCCchhhhhhhhcCCceE-EEEeecCCccCCCCCchh
Q 026566 30 QIDFILGSWVHSELP-----------TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSL-VLILDLSPRKDLVLHPDY 97 (237)
Q Consensus 30 ~IDf~l~SWlh~~lP-----------~G~al~itsL~~~L~~stdaPhfl~ElIq~sPtsl-vl~LDl~PRkDLvl~pdY 97 (237)
.-...+++|.++. | -|.++.|.|..+|=+|..|.|=|++-++. +|... ..|+|+-|=.. -+..+|
T Consensus 51 ~~~l~I~n~~~q~-~~fRk~hle~~~~G~~lqVLn~V~fP~~~yDlPiFGaDlv~-~~~~~slaIlDlqPl~~-~~~~~Y 127 (243)
T PRK02816 51 GEKLFIENECYQA-PGFRKLHLELARLGNGLDILHCVMFPDPRYDLPIFGADLVA-GRGGISAAIVDLSPVSR-TLPDAY 127 (243)
T ss_pred CCeeEEEEeeecc-cchhhhheeeeccCCCceEEEEEecCCCCCCCCccceeEee-cCCceeEEEEecCcccc-cchHHH
Confidence 3467788887542 3 27899999999999999999999999998 55454 45899999651 223478
Q ss_pred HHHhhcccchhHHHHHhhhCCCcccccCccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcchhhHHHHHHHHH
Q 026566 98 LQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWL 177 (237)
Q Consensus 98 l~~yYE~t~ld~~Rq~lek~Pe~~pYvS~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~p~A~evl~~WL 177 (237)
.+++ ++...- ..+...++|+--- .+||-.++.+-.. + -.++.+-+..++-|+.|+
T Consensus 128 ~~~l-~~l~~~-~f~~~r~lp~wg~----------~FSp~~lf~R~~~---------~----~e~~~~~~~f~~yL~~~~ 182 (243)
T PRK02816 128 IKAL-SALPKP-AFSQPRELPEWGD----------IFSPYCLFIRPTN---------A----EEENQFLDRVDEYLSIHC 182 (243)
T ss_pred HHHH-Hhhcch-hhhccccCCCccC----------ccCcceEEecCCC---------H----HHHHHHHHHHHHHHHHHH
Confidence 8877 554332 2334455544332 5577777777443 1 112347789999999999
Q ss_pred hhhhcCCcccC-hhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHH
Q 026566 178 NQCACGGRHVG-ESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGE 230 (237)
Q Consensus 178 ~~c~~~~~~v~-e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~a 230 (237)
+- +..+.|+. .++.+...+..+--=....|.|++.-| -|.||++-|||-++.
T Consensus 183 ~~-~~~a~p~~~~~~~~~~~~~Q~~Y~~~q~enDptr~vL~~~FG~~Wae~yi~~ 236 (243)
T PRK02816 183 QL-AIAAQPDSDSEQIIERLAGQKNYCLQQKRNDKTRRVLEKAFGPEWADRYITT 236 (243)
T ss_pred HH-HHhCCCCCCchhHHHHHHHHHHHHHHHHHcCcHHHHHHHHcChHHHHHHHHh
Confidence 98 67777776 444444444444444667899999988 999999999999875
No 9
>PRK13246 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional
Probab=98.20 E-value=5.5e-06 Score=74.55 Aligned_cols=186 Identities=16% Similarity=0.276 Sum_probs=130.0
Q ss_pred eeeeccccccCCCccceeeeccccccCC-----------CCccccceeeheecccCCCCchhhhhhhh-cCCceEEEEee
Q 026566 17 YMVFNNLMIMDACQIDFILGSWVHSELP-----------TGAALNITSLSAYLNSSTDAPNLLIELIQ-SSPSSLVLILD 84 (237)
Q Consensus 17 ~~~~~~L~~~~gs~IDf~l~SWlh~~lP-----------~G~al~itsL~~~L~~stdaPhfl~ElIq-~sPtslvl~LD 84 (237)
|-|=.+.....+..-..++.+|+++. | -|.+++|.|..+|=+|..|.|=|+.-|+. |.-.-++-|+|
T Consensus 21 ~~i~~~f~~~~~~~~~~~I~n~~~q~-~~fRk~r~~~~~~G~~lqVLn~V~fP~p~yDLPifG~Dlv~f~~~~~~aaIlD 99 (236)
T PRK13246 21 LQISKEFKEHHNKDSKYIIKNWLFSS-PEYRKWRITRLDGGKKLQVFNTVAYPNFKSELPILGADILWFGTSQKLLAILD 99 (236)
T ss_pred ccCchhHHHHhcCCCceEEEeehhcC-chHHHHHHHHhhcCCCcEEEEEEecCCCCCCCCccceeeeecCCCceEEEEEe
Confidence 33333444445566788999998642 4 37899999999999999999999999987 54444777899
Q ss_pred cCCccCCCCCchhHHHhhcccchhHH-HHH-----hhhCCCcccccCcc-ceeeeecCcceEEEEeecccccCCCcccch
Q 026566 85 LSPRKDLVLHPDYLQTFYESTRLDEY-RQM-----LEKVPEVRPYFSSS-LYLRCVISPSAIMVRVDTETETGAGESTRL 157 (237)
Q Consensus 85 l~PRkDLvl~pdYl~~yYE~t~ld~~-Rq~-----lek~Pe~~pYvS~S-LyvRs~~SPTAi~~~i~~~~~~~~g~~~~l 157 (237)
|=|= ..+.+|.++||+.-.-=.+ +.. -.+.|+..+|+||- ||+| |.+ +
T Consensus 100 lqPl---~~d~~y~~~y~~~L~~L~~~~~~~~~~~~r~~~e~~~~FSp~~lf~R----~~~----------------~-- 154 (236)
T PRK13246 100 YQPL---IQEKKYLEKYCSSLGFIKKKYSAFDNNKMKNIYDSKKYFSPWVIICR----GNK----------------L-- 154 (236)
T ss_pred CCCc---ccchhhhHHHHHHHHHHHHhhHhhCcccCCCCcchHhhcCCceEEEe----cCC----------------c--
Confidence 9995 5578999999988532211 122 23678888888874 4555 111 1
Q ss_pred HHHHhhcchhhHHHHHHHHHhhhhcCCcccChhhHHHHHHhhhhhhhhceeeccCCCC-CcccChhHHHHHHHHH
Q 026566 158 DYIITNHVHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSF-PRLFGPQVASRVLGEI 231 (237)
Q Consensus 158 eeiv~~~v~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~kRD~~Ir~k~iE~DL~~nl-PRlFG~evadRvv~ai 231 (237)
.|...+.+.=.+.++-+|+- .+.+...++.+.+.+.++..--=+-..|.|++..| -|+||+|=|+|.|+.+
T Consensus 155 --~~~~~~~~~F~~~v~~Yl~i-~~~~~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~~Wae~yI~~~ 226 (236)
T PRK13246 155 --NLDRDLNNIFHSFVNNYLNI-NKSNPVNQFLNLEEIKINQIKYDKYSFEKDPADKLFKSFFGEKWTKKFINKF 226 (236)
T ss_pred --cccHHHHHHHHHHHHHHHHH-HHhcccCCccCHHHHHHHHHHHHHHHHHcCcHHHHHHHHhChHHHHHHHHhc
Confidence 22333556667777777766 35444444445555565555555678899999998 9999999999998753
No 10
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=54.26 E-value=14 Score=29.90 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhhhhcCCcccChhhHHHHHHhhhhhhh
Q 026566 168 VAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKN 204 (237)
Q Consensus 168 ~A~evl~~WL~~c~~~~~~v~e~Er~~L~kRD~~Ir~ 204 (237)
-+-.+|+.|... ++++||+.+++||..+-.
T Consensus 54 GgYrILda~iar-------v~~eer~~~ear~~a~~a 83 (93)
T PF09679_consen 54 GGYRILDAWIAR-------VSREERAALEARQQAICA 83 (93)
T ss_pred hhHHHHHHHHHH-------HhHHHHHHHHHHHHHHHH
Confidence 456788888877 577889999999887643
No 11
>PF14231 GXWXG: GXWXG protein
Probab=27.71 E-value=28 Score=25.76 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=19.9
Q ss_pred CCCccceeeeccccccCCCCcccc
Q 026566 27 DACQIDFILGSWVHSELPTGAALN 50 (237)
Q Consensus 27 ~gs~IDf~l~SWlh~~lP~G~al~ 50 (237)
+.-++|||+|.|=+..++||-.+|
T Consensus 8 ~pV~~~~m~G~W~G~~f~TGHp~~ 31 (60)
T PF14231_consen 8 PPVDPEFMLGRWRGGEFDTGHPMD 31 (60)
T ss_pred CCCCHHHheEecccCccCCCCcch
Confidence 456799999999999999995443
No 12
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=26.63 E-value=65 Score=24.63 Aligned_cols=24 Identities=17% Similarity=0.591 Sum_probs=18.6
Q ss_pred CcccchHHHHhhcchhhHHHHHHHHHhh
Q 026566 152 GESTRLDYIITNHVHPVAKQVIGIWLNQ 179 (237)
Q Consensus 152 g~~~~leeiv~~~v~p~A~evl~~WL~~ 179 (237)
++..++|++|++-+.| +|..|||.
T Consensus 30 ~~~~TlE~lvremLRP----mLkeWLD~ 53 (73)
T PF10691_consen 30 SSGRTLEDLVREMLRP----MLKEWLDE 53 (73)
T ss_pred cccccHHHHHHHHHHH----HHHHHHHh
Confidence 4668999998888877 46678886
No 13
>PF14160 FAM110_C: Centrosome-associated C terminus
Probab=26.15 E-value=68 Score=26.49 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=46.3
Q ss_pred hhHHHhhcccchhHHHHHhhhCCCcccc--c--CccceeeeecCcceEEEEeecccccCCCcccchHHHHhhcch-hhH-
Q 026566 96 DYLQTFYESTRLDEYRQMLEKVPEVRPY--F--SSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVH-PVA- 169 (237)
Q Consensus 96 dYl~~yYE~t~ld~~Rq~lek~Pe~~pY--v--S~SLyvRs~~SPTAi~~~i~~~~~~~~g~~~~leeiv~~~v~-p~A- 169 (237)
.=|++||.--+|| ...++.+..-..+ - ..++++||+-+++.=+-....+++.+. .++.+.+ ++- |+.
T Consensus 21 sele~FF~~cGLd--~~~~e~lg~e~f~~~~sd~~s~~f~S~s~~~sd~~~s~~S~~~~~-~~~~~~~----r~p~~~SI 93 (111)
T PF14160_consen 21 SELERFFNYCGLD--PEVVERLGRENFSRASSDISSLSFRSVSVVTSDSEFSRDSGDDGP-EEEELAE----RVPYGVSI 93 (111)
T ss_pred HHHHHHHHHcCCC--HHHHHhhcccccccccCcccCceeecCCCCcCCccccCCCccccc-ccccccc----cCCCCCce
Confidence 4589999999999 6888888543333 1 237899998877775544333222111 1222222 232 221
Q ss_pred ---HHHHHHHHhhhh
Q 026566 170 ---KQVIGIWLNQCA 181 (237)
Q Consensus 170 ---~evl~~WL~~c~ 181 (237)
++.+=.||=.|.
T Consensus 94 IERNARIIKWLy~Ck 108 (111)
T PF14160_consen 94 IERNARIIKWLYGCK 108 (111)
T ss_pred eeehhHHHHHHHhcc
Confidence 456677998883
No 14
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=25.50 E-value=34 Score=27.03 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhhhhcCCcccChhhHHHHHHhhh
Q 026566 167 PVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDG 200 (237)
Q Consensus 167 p~A~evl~~WL~~c~~~~~~v~e~Er~~L~kRD~ 200 (237)
--+-.+|+.|.-. ++++||+++++||+
T Consensus 53 ~GgYRilda~iar-------v~~eer~~~~~r~~ 79 (80)
T PRK13727 53 FGAYRVLDAWIAR-------VSREEREALEARQQ 79 (80)
T ss_pred hhHHHHHHHHHHH-------HHHHHHHHhcCCCC
Confidence 3455678888843 67899999999985
No 15
>PHA02046 hypothetical protein
Probab=23.76 E-value=1.2e+02 Score=24.83 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=50.3
Q ss_pred chhhHHHHHHHHHhhhhcCCcccChhhHHHHHHhhhhhhhhceeeccCCCC--Cc---ccChhHHHHHHHHHHhH
Q 026566 165 VHPVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDGLIKNKTIEIDLGSSF--PR---LFGPQVASRVLGEIQKV 234 (237)
Q Consensus 165 v~p~A~evl~~WL~~c~~~~~~v~e~Er~~L~kRD~~Ir~k~iE~DL~~nl--PR---lFG~evadRvv~air~~ 234 (237)
++...-+++.+=+.|.....-|++.+.++++.| ..|-+.|+.||+.+- -+ -|-++.+.|.-++.++.
T Consensus 13 LH~~~a~~l~~e~~~~re~eiPlpaad~aa~~K---FLKDNnItcdpaD~~~m~~Lr~e~~~~~a~rr~~~~~~~ 84 (99)
T PHA02046 13 LHELVCTAIEREFKWYRENDIPLPAADKAAIAK---FLKDNEITCDPADTINIDRLREEFRQAQAENRRIALEGF 84 (99)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH---HhhcCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777788888888889999999998875 899999999988653 33 36666666665555443
No 16
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=22.70 E-value=69 Score=23.32 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=18.9
Q ss_pred HHhhhhcCCcccChhhHHHHHH
Q 026566 176 WLNQCACGGRHVGESDKAYLEK 197 (237)
Q Consensus 176 WL~~c~~~~~~v~e~Er~~L~k 197 (237)
|=+|+.-.|+|++++.+++|.+
T Consensus 20 Wd~wvSf~GrPltdevK~a~k~ 41 (49)
T PF06543_consen 20 WDKWVSFDGRPLTDEVKEAMKL 41 (49)
T ss_pred hHHheeeCCeeCCHHHHHHHHH
Confidence 8788777999999999998863
No 17
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=20.92 E-value=67 Score=25.38 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHhhhhcCCcccChhhHHHHHHhhh
Q 026566 167 PVAKQVIGIWLNQCACGGRHVGESDKAYLEKRDG 200 (237)
Q Consensus 167 p~A~evl~~WL~~c~~~~~~v~e~Er~~L~kRD~ 200 (237)
--+-.+|+.|.-. ++++||+++++|.+
T Consensus 53 ~G~YRiLdawiar-------v~~eer~~~~~r~~ 79 (80)
T TIGR02741 53 WGAYRVLDAWIAR-------VSREERDALEARQE 79 (80)
T ss_pred hhHHHHHHHHHHH-------HHHHHHHHhhcccC
Confidence 3456788888844 67889999999864
Done!