Query 026568
Match_columns 236
No_of_seqs 195 out of 1543
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:42:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0700 Protein phosphatase 2C 100.0 4.8E-50 1E-54 355.8 16.6 234 1-236 17-287 (390)
2 KOG0698 Serine/threonine prote 100.0 1.4E-35 3E-40 265.3 19.2 173 48-236 42-220 (330)
3 PF00481 PP2C: Protein phospha 100.0 1.3E-34 2.9E-39 249.9 15.4 169 49-236 3-175 (254)
4 KOG0697 Protein phosphatase 1B 100.0 2.4E-34 5.3E-39 244.1 14.4 168 48-236 24-199 (379)
5 PLN03145 Protein phosphatase 2 100.0 3.7E-33 8E-38 252.0 18.9 165 52-236 72-240 (365)
6 PTZ00224 protein phosphatase 2 100.0 3E-30 6.6E-35 234.0 18.0 151 51-236 28-179 (381)
7 KOG0699 Serine/threonine prote 100.0 8.3E-28 1.8E-32 210.7 13.5 77 147-236 329-405 (542)
8 COG0631 PTC1 Serine/threonine 99.9 8.9E-27 1.9E-31 202.4 12.2 156 55-236 19-179 (262)
9 cd00143 PP2Cc Serine/threonine 99.9 4.4E-23 9.6E-28 175.7 19.0 159 55-236 11-173 (254)
10 smart00332 PP2Cc Serine/threon 99.9 8.5E-23 1.8E-27 174.6 19.2 159 54-236 15-176 (255)
11 PRK14559 putative protein seri 99.9 1.5E-22 3.3E-27 193.5 14.9 163 55-236 386-555 (645)
12 KOG1323 Serine/threonine phosp 99.8 9.8E-20 2.1E-24 158.7 12.9 120 75-208 140-298 (493)
13 PF13672 PP2C_2: Protein phosp 99.4 1.3E-12 2.9E-17 109.2 12.7 129 51-195 4-139 (212)
14 smart00331 PP2C_SIG Sigma fact 99.1 1.5E-09 3.2E-14 89.4 11.5 102 55-177 13-116 (193)
15 KOG1379 Serine/threonine prote 99.0 7.2E-09 1.6E-13 90.6 11.7 109 58-193 90-208 (330)
16 KOG0618 Serine/threonine phosp 98.9 4.2E-09 9.1E-14 103.0 8.3 133 79-235 551-692 (1081)
17 TIGR02865 spore_II_E stage II 97.6 0.0007 1.5E-08 67.3 12.3 114 55-195 563-678 (764)
18 PF07228 SpoIIE: Stage II spor 97.5 0.0022 4.7E-08 52.3 12.2 87 78-177 3-91 (193)
19 TIGR02276 beta_rpt_yvtn 40-res 27.7 93 0.002 17.9 3.1 19 159-177 3-21 (42)
20 PF01436 NHL: NHL repeat; Int 24.2 1.3E+02 0.0029 16.3 3.4 18 157-174 10-27 (28)
21 PF05785 CNF1: Rho-activating 21.4 1E+02 0.0023 27.1 3.2 24 146-170 130-153 (281)
22 COG4309 Uncharacterized conser 20.7 1.5E+02 0.0033 21.7 3.4 41 183-225 33-75 (98)
No 1
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-50 Score=355.75 Aligned_cols=234 Identities=46% Similarity=0.772 Sum_probs=201.7
Q ss_pred ChHHHHHHHHHhcCccccCcccc--CCCCC-CCccccccccCCCCCccCceeeeeecCCCCCccceecccCCCCCCCC-C
Q 026568 1 MLSRLMNFLRACWRPSSDRYVHT--SADTA-GRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLES-G 76 (236)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~w~~~~~~~~~~~~s~~~~~~r~~~ED~~~i~~~~~~~~~~-~ 76 (236)
|++..+++.+.||+|..+....+ .+... ...+++.|+++...+..+++++++.+.++.++|...++.+....... .
T Consensus 17 ~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~~~n~~q~a~~~~~edrv~~~~s~~ 96 (390)
T KOG0700|consen 17 MKSTPMRLKRSCLRPIRRGESSSRSGSDSSGNSVDGLLWYKDRSEHSFGDFSMAVLQANNLQEAQGKAEEDRVSVAVSEE 96 (390)
T ss_pred hccccchhhhhccCCCccccccccccccCCCCCcccccccccccccCcccchhhhhhhhhhhhhcCCcccCcceeeeecc
Confidence 56778899999999998732211 12222 36789999999999999999999999998888888877766654433 5
Q ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhh------------h--------------------h-ccchHHHHHHH
Q 026568 77 PYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTS------------E--------------------Q-QSMSVDVIKKA 123 (236)
Q Consensus 77 ~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~------------~--------------------~-~~~~~~~l~~a 123 (236)
+...|+||||||||++|++|++++|+.++...+. + . ...+.++|.+|
T Consensus 97 ~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~A 176 (390)
T KOG0700|consen 97 NGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKA 176 (390)
T ss_pred CCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHH
Confidence 6779999999999999999999999999983332 1 1 24578899999
Q ss_pred HHHHHHHHHHHHhhhCCCCCCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHhHHHH
Q 026568 124 YQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQE 203 (236)
Q Consensus 124 f~~~d~~~~~~~~~~~~~~~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~E~~R 203 (236)
|.++|++|++.+.+++...|+.+.+||||++++|.+..|||||+|||||||+...+..+...++|||.||+.++++|++|
T Consensus 177 f~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~R 256 (390)
T KOG0700|consen 177 FEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVRR 256 (390)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999844444479999999999999999999
Q ss_pred HHhcCCCCCCeEEEeCCeecccCcccccccCCC
Q 026568 204 MHSMHPDDSQIVVLKHNVWRVKGLIQVTSMWKQ 236 (236)
Q Consensus 204 I~~~gp~~~~~vv~~~~~~rv~G~L~vsRaiG~ 236 (236)
|+.+||+|+.++++++ |||+|+|+|||||||
T Consensus 257 ir~eHPdd~~~vv~~~--~RvkG~L~vsRAfGd 287 (390)
T KOG0700|consen 257 IRSEHPDDPHIVVNKH--WRVKGILQVSRAFGD 287 (390)
T ss_pred HHHhCCCCcceEeecc--ceeeEEEEeeeeccc
Confidence 9999999999999887 899999999999998
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-35 Score=265.34 Aligned_cols=173 Identities=29% Similarity=0.461 Sum_probs=143.0
Q ss_pred eeeeeecC-CCCCccceecccCCCCCCCCCC-CeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhcc--chHHHHHHH
Q 026568 48 FSMAVVQA-NNLLEDQSQIESGPLSTLESGP-YGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQS--MSVDVIKKA 123 (236)
Q Consensus 48 ~s~~~~~~-r~~~ED~~~i~~~~~~~~~~~~-~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~~--~~~~~l~~a 123 (236)
.+....++ |..|||.+.............. ...||||||||||..+|+|+.++|+..|.+.+..... ..+++++++
T Consensus 42 ~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~~ 121 (330)
T KOG0698|consen 42 GSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRRA 121 (330)
T ss_pred eEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH
Confidence 34444554 6789999987655442222233 4789999999999999999999999999987776653 378999999
Q ss_pred HH-HHHHHHHHHHhhhCCCCCCcccccceEEEEEEECC-EEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHhHH
Q 026568 124 YQ-ATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCG-TLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVR 201 (236)
Q Consensus 124 f~-~~d~~~~~~~~~~~~~~~~~~~~GtTa~v~~i~~~-~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~E~ 201 (236)
|. ++|.+|++. ......+||||++++|.++ +|||||+|||||||++. .+++++||.||+|..++|+
T Consensus 122 F~~~~D~~~~~~-------~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~-----~~~a~~Ls~DHkP~~~~E~ 189 (330)
T KOG0698|consen 122 FLTKTDSEFLEK-------REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRK-----GGVAVQLSVDHKPDREDER 189 (330)
T ss_pred HHHHHHHHHHhh-------ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecC-----CCeeeeCCCCCCCCcHHHH
Confidence 99 699999875 1113578999999999866 99999999999999987 1389999999999999999
Q ss_pred HHHHhcCCCCCCeEEEeCCeecccCcccccccCCC
Q 026568 202 QEMHSMHPDDSQIVVLKHNVWRVKGLIQVTSMWKQ 236 (236)
Q Consensus 202 ~RI~~~gp~~~~~vv~~~~~~rv~G~L~vsRaiG~ 236 (236)
+||+++| +.+....+.|||.|.|+|||+|||
T Consensus 190 ~RI~~~G----G~v~~~~~~~Rv~G~LavsRa~GD 220 (330)
T KOG0698|consen 190 ERIEAAG----GRVSNWGGVWRVNGVLAVSRAFGD 220 (330)
T ss_pred HHHHHcC----CEEEEcCCcceEeceEEEeeecCC
Confidence 9999999 677766678999999999999998
No 3
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.3e-34 Score=249.85 Aligned_cols=169 Identities=28% Similarity=0.394 Sum_probs=131.9
Q ss_pred eeeeec-CCCCCccceecccCCCCCCCCCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhcc-chHHHHHHHHHH
Q 026568 49 SMAVVQ-ANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQS-MSVDVIKKAYQA 126 (236)
Q Consensus 49 s~~~~~-~r~~~ED~~~i~~~~~~~~~~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~~-~~~~~l~~af~~ 126 (236)
+.+..+ .|..|||.+.+..+.... ....+..+|||||||||..+++|++++|+..|.+....... ...++|..+|.+
T Consensus 3 ~~~~~~g~r~~~eD~~~~~~~~~~~-~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~~ 81 (254)
T PF00481_consen 3 GVSSMQGVRKEMEDRHLIIQNFNSN-SGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFLA 81 (254)
T ss_dssp EEEEEECTSSSHHEEEEEEEEETCC-TTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CeecCCCCCCcccCEEEEecCcccc-CCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceeee
Confidence 334444 588999999885433221 23345689999999999999999999999988887766554 578999999999
Q ss_pred -HHHHHHHHHhhhCCCCCCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEE-eCCCCCCCCCHhHHHHH
Q 026568 127 -TEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAI-QLSSEHNVGIESVRQEM 204 (236)
Q Consensus 127 -~d~~~~~~~~~~~~~~~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~-~LT~DH~~~~~~E~~RI 204 (236)
+++.+.+.... . ....+||||++++|.+++|||||||||||||++. +... +||+||+|++++|++||
T Consensus 82 ~~~~~~~~~~~~----~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~------~~~~~~Lt~dH~~~~~~E~~RI 150 (254)
T PF00481_consen 82 FTDESLYSDSEN----N-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRN------GGIIKQLTRDHKPSNPDERERI 150 (254)
T ss_dssp HHHHHHHHHHHH----H-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEET------TEEEEESS---STTSHHHHHHH
T ss_pred cccccccccccc----c-ccccccccccccccccceeEEEeeeeeeeeeeec------cccccccccccccchhhcccee
Confidence 88888773321 0 1267899999999999999999999999999998 5555 99999999999999999
Q ss_pred HhcCCCCCCeEEEeCCeecccCcccccccCCC
Q 026568 205 HSMHPDDSQIVVLKHNVWRVKGLIQVTSMWKQ 236 (236)
Q Consensus 205 ~~~gp~~~~~vv~~~~~~rv~G~L~vsRaiG~ 236 (236)
+++|| .+.. .+||.|.|++||+|||
T Consensus 151 ~~~gg----~v~~---~~rv~g~l~~sRalGd 175 (254)
T PF00481_consen 151 RKAGG----RVSE---NGRVNGVLAVSRALGD 175 (254)
T ss_dssp HHTT-----GEEE---TEEETTTBSSSB-EE-
T ss_pred ecccc----cccc---chhhhhcccccccccc
Confidence 99994 4433 4699999999999998
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-34 Score=244.11 Aligned_cols=168 Identities=20% Similarity=0.296 Sum_probs=142.4
Q ss_pred eeeeeecCCC-CCccceecccCCCCCCCCCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhc-------cchHHH
Q 026568 48 FSMAVVQANN-LLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQ-------SMSVDV 119 (236)
Q Consensus 48 ~s~~~~~~r~-~~ED~~~i~~~~~~~~~~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~-------~~~~~~ 119 (236)
|+++++|+++ .|||++....... .+-.+.+||+|||||.|..+|++++++|.++|.+.-.... ++.+..
T Consensus 24 yg~SSMQGWR~eMEDah~A~~~l~---~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~~G 100 (379)
T KOG0697|consen 24 YGVSSMQGWRVEMEDAHTAVAGLP---SPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVEKG 100 (379)
T ss_pred eeeccccchhhhhhhhhhhhhcCC---CCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHHhh
Confidence 7789999955 7999997754322 2334589999999999999999999999999976433222 356789
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHh
Q 026568 120 IKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIES 199 (236)
Q Consensus 120 l~~af~~~d~~~~~~~~~~~~~~~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~ 199 (236)
|+..|.++|+.+....... .....+||||+.++|...++|++|+||||+||+|+ ++++.-|.||+|.+|+
T Consensus 101 IrtGFL~iDE~mr~~~~~~----~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rn------g~~~f~TqDHKP~~p~ 170 (379)
T KOG0697|consen 101 IRTGFLSIDEIMRTLSDIS----KGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRN------GEVVFSTQDHKPYLPK 170 (379)
T ss_pred HhhcceeHHHHHhhhhhhh----cccccCCceEEEEEecCceEEEEecCcchhheecC------CceEEeccCCCCCChH
Confidence 9999999998877654331 22356999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEeCCeecccCcccccccCCC
Q 026568 200 VRQEMHSMHPDDSQIVVLKHNVWRVKGLIQVTSMWKQ 236 (236)
Q Consensus 200 E~~RI~~~gp~~~~~vv~~~~~~rv~G~L~vsRaiG~ 236 (236)
|++||+.+| +.|.++ ||+|.|+|||||||
T Consensus 171 EkeRIqnAG----GSVMIq----RvNGsLAVSRAlGD 199 (379)
T KOG0697|consen 171 EKERIQNAG----GSVMIQ----RVNGSLAVSRALGD 199 (379)
T ss_pred HHHHHhcCC----CeEEEE----EecceeeeehhccC
Confidence 999999999 678877 99999999999998
No 5
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=3.7e-33 Score=251.98 Aligned_cols=165 Identities=22% Similarity=0.298 Sum_probs=131.4
Q ss_pred eecCCCCCccceecccCCCC---C-CCCCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHH
Q 026568 52 VVQANNLLEDQSQIESGPLS---T-LESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQAT 127 (236)
Q Consensus 52 ~~~~r~~~ED~~~i~~~~~~---~-~~~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~ 127 (236)
..+.|+.|||++.+..+... . ........||||||||||+.+++|++++|++.|.+.... .....++|.++|.++
T Consensus 72 ~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~-~~~~~~al~~af~~~ 150 (365)
T PLN03145 72 DIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDF-PREIEKVVSSAFLQT 150 (365)
T ss_pred cccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHH
Confidence 33459999999876443211 0 011223579999999999999999999999999764322 224578899999999
Q ss_pred HHHHHHHHhhhCCCCCCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHhHHHHHHhc
Q 026568 128 EDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSM 207 (236)
Q Consensus 128 d~~~~~~~~~~~~~~~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~E~~RI~~~ 207 (236)
|+.|.+.... . ....+|||+++++|.++++||||+||||||+++. +++++||+||+|.++.|++||++.
T Consensus 151 d~~~~~~~~~----~-~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~------g~~~~LT~DH~~~~~~E~~RI~~~ 219 (365)
T PLN03145 151 DTAFAEACSL----D-ASLASGTTALAALVVGRSLVVANAGDCRAVLCRR------GKAIEMSRDHKPMCSKERKRIEAS 219 (365)
T ss_pred hHHHHhhhcc----c-cCCCCcCcEEEEEEECCeEEEEecCCceEEEEcC------CeEEEecCCCCCCCHHHHHHHHHc
Confidence 9998765322 1 1245899999999999999999999999999998 899999999999999999999999
Q ss_pred CCCCCCeEEEeCCeecccCcccccccCCC
Q 026568 208 HPDDSQIVVLKHNVWRVKGLIQVTSMWKQ 236 (236)
Q Consensus 208 gp~~~~~vv~~~~~~rv~G~L~vsRaiG~ 236 (236)
| +.+. .+ |+.|.+++||+|||
T Consensus 220 G----g~v~--~g--~v~g~l~vTRalGD 240 (365)
T PLN03145 220 G----GYVY--DG--YLNGQLNVARALGD 240 (365)
T ss_pred C----Ccee--cc--eECCcccccccccc
Confidence 8 4443 23 89999999999997
No 6
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.97 E-value=3e-30 Score=233.96 Aligned_cols=151 Identities=23% Similarity=0.257 Sum_probs=122.9
Q ss_pred eeecCCCCCccceecccCCCCCCCCCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHH
Q 026568 51 AVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDG 130 (236)
Q Consensus 51 ~~~~~r~~~ED~~~i~~~~~~~~~~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~d~~ 130 (236)
+..+.|+.|||++.+.. .++..||||||||||.+||+|++++|+..+.+... ....+.|+++|..+|++
T Consensus 28 s~~G~R~~nED~~~v~~--------~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~---~~~~~~l~~a~~~~d~~ 96 (381)
T PTZ00224 28 CVNGYRESMEDAHLLYL--------TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPE---PMTDERMEELCLEIDEE 96 (381)
T ss_pred eCCCCCCCCCCeeEecc--------CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccc---cccHHHHHHHHHHHHHH
Confidence 34445889999987632 12346999999999999999999999988754321 22356799999999999
Q ss_pred HHHHHhhhCCCCCCcccccceEEEEEEE-CCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHhHHHHHHhcCC
Q 026568 131 FFSLVTKQWPMKPQIAAVGSCCLVGVIS-CGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHP 209 (236)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~GtTa~v~~i~-~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~E~~RI~~~gp 209 (236)
|++.. ..+|||+++++|. +.++|||||||||||+++. +++++||+||++.++.|++||.+.+
T Consensus 97 i~~~~----------~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~------g~~~~LT~DH~~~~~~E~~RI~~~g- 159 (381)
T PTZ00224 97 WMDSG----------REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRD------GKLVFATEDHKPNNPGERQRIEACG- 159 (381)
T ss_pred HHhcc----------cCCCCeEEEEEEEECCEEEEEEcccceEEEEEC------CEEEEcccCCCCCCHHHHhHHHHcc-
Confidence 87532 2359999998886 5799999999999999998 8999999999999999999999988
Q ss_pred CCCCeEEEeCCeecccCcccccccCCC
Q 026568 210 DDSQIVVLKHNVWRVKGLIQVTSMWKQ 236 (236)
Q Consensus 210 ~~~~~vv~~~~~~rv~G~L~vsRaiG~ 236 (236)
+.+.. .||+|.+++||+|||
T Consensus 160 ---g~v~~----~Rv~G~l~vTRalGd 179 (381)
T PTZ00224 160 ---GRVVS----NRVDGDLAVSRAFGD 179 (381)
T ss_pred ---CEecc----ccccCceeeecccCC
Confidence 33332 399999999999997
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=8.3e-28 Score=210.69 Aligned_cols=77 Identities=29% Similarity=0.398 Sum_probs=71.6
Q ss_pred cccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHhHHHHHHhcCCCCCCeEEEeCCeecccC
Q 026568 147 AVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKG 226 (236)
Q Consensus 147 ~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~E~~RI~~~gp~~~~~vv~~~~~~rv~G 226 (236)
.+||||+|++|.+++|||||.|||||||+|. ++++.||.||+|..+.|..||.++| +-|.+. +||+|
T Consensus 329 DSGtTAvVcLv~g~~liVANAGDSRcV~sr~------GkAvdmS~DHKPEDevE~~RI~~AG----G~vtlD---GRVNG 395 (542)
T KOG0699|consen 329 DSGTTAVVCLVGGDKLIVANAGDSRCVLSRN------GKAVDMSVDHKPEDEVETNRIHAAG----GQVTLD---GRVNG 395 (542)
T ss_pred CCCceEEEEEecCceEEEecCCCcceEEecC------CceeecccCCCcccHHHHHHHHhcC----CeEeec---ceecC
Confidence 4899999999999999999999999999999 9999999999999999999999999 444443 49999
Q ss_pred cccccccCCC
Q 026568 227 LIQVTSMWKQ 236 (236)
Q Consensus 227 ~L~vsRaiG~ 236 (236)
.|++||+|||
T Consensus 396 GLNLSRA~GD 405 (542)
T KOG0699|consen 396 GLNLSRAFGD 405 (542)
T ss_pred ccchhhhhhh
Confidence 9999999997
No 8
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=8.9e-27 Score=202.37 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=125.1
Q ss_pred CCCCCccceecccCCCCCCCCCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhcc---c--hHHHHHHHHHHHHH
Q 026568 55 ANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQS---M--SVDVIKKAYQATED 129 (236)
Q Consensus 55 ~r~~~ED~~~i~~~~~~~~~~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~~---~--~~~~l~~af~~~d~ 129 (236)
.|..|||.+.+.... .... ..||+|||||||+.+++++++.+.+.|.+....... . ..+.|.+++..+++
T Consensus 19 ~R~~NeD~~~~~~~~----~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~n~ 93 (262)
T COG0631 19 VRKHNEDAFLIKPNE----NGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAILKANE 93 (262)
T ss_pred ccCCCCcceeecccc----CCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 466899999884311 1112 469999999999999999999999999987665431 1 47899999999999
Q ss_pred HHHHHHhhhCCCCCCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHhHHHHHHhcCC
Q 026568 130 GFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHP 209 (236)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~E~~RI~~~gp 209 (236)
.+.+.... ......+|||++++++.++++|+|||||||+||+++ +..+|||.||++.++.|++|+...++
T Consensus 94 ~i~~~~~~----~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~------~~~~~lT~DH~~~~~~~~~~~~~~~~ 163 (262)
T COG0631 94 AIAEEGQL----NEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRD------GELKQLTEDHSLVNRLEQRGIITPEE 163 (262)
T ss_pred HHHHhhhc----ccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcC------CceEEeccCCcHHHHHHHhcCCCHHH
Confidence 99886431 234478999999999999999999999999999998 89999999999999999999877652
Q ss_pred CCCCeEEEeCCeecccCcccccccCCC
Q 026568 210 DDSQIVVLKHNVWRVKGLIQVTSMWKQ 236 (236)
Q Consensus 210 ~~~~~vv~~~~~~rv~G~L~vsRaiG~ 236 (236)
..... |.+ ++||+||+
T Consensus 164 ----~~~~~----~~~---~ltralG~ 179 (262)
T COG0631 164 ----ARSHP----RRN---ALTRALGD 179 (262)
T ss_pred ----HHhCc----cch---hhhhhcCC
Confidence 22211 333 88999996
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.91 E-value=4.4e-23 Score=175.67 Aligned_cols=159 Identities=28% Similarity=0.406 Sum_probs=129.5
Q ss_pred CCCCCccceecccCCCCCCCCCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhh----ccchHHHHHHHHHHHHHH
Q 026568 55 ANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQ----QSMSVDVIKKAYQATEDG 130 (236)
Q Consensus 55 ~r~~~ED~~~i~~~~~~~~~~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~----~~~~~~~l~~af~~~d~~ 130 (236)
.|..|||++.+...... .+..+|+|+|||||...++++++.+.+.|.+.+... ...+.+.|+++|.++++.
T Consensus 11 ~r~~neD~~~~~~~~~~-----~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (254)
T cd00143 11 DRKTNEDAVVIKPNLNN-----EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLRADEE 85 (254)
T ss_pred CCCCCcceEEEeccCCC-----CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Confidence 47789999987432110 135899999999999999999999999998877654 345678899999999999
Q ss_pred HHHHHhhhCCCCCCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHhHHHHHHhcCCC
Q 026568 131 FFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHPD 210 (236)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~E~~RI~~~gp~ 210 (236)
+....... .....+|||++++++.++.++++|+||||+|+++. ++.++||.||++.++.|+.||...++
T Consensus 86 l~~~~~~~----~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~------~~~~~lt~dh~~~~~~~~~~i~~~~~- 154 (254)
T cd00143 86 ILEEAQDE----PDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRN------GEAVQLTKDHKPVNEEERERIEKAGG- 154 (254)
T ss_pred HHHhhhhc----cCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcC------CceeEcCCCCCCcChHHHHHHHHcCC-
Confidence 88765431 23367899999999999999999999999999998 78999999999999999999999884
Q ss_pred CCCeEEEeCCeecccCcccccccCCC
Q 026568 211 DSQIVVLKHNVWRVKGLIQVTSMWKQ 236 (236)
Q Consensus 211 ~~~~vv~~~~~~rv~G~L~vsRaiG~ 236 (236)
.+. ..+..+...+||+||+
T Consensus 155 ---~~~----~~~~~~~~~~t~~lG~ 173 (254)
T cd00143 155 ---RVS----NGRVPGVLAVTRALGD 173 (254)
T ss_pred ---cEE----eCEEcCceeeccccCC
Confidence 221 1266777899999985
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.91 E-value=8.5e-23 Score=174.58 Aligned_cols=159 Identities=28% Similarity=0.460 Sum_probs=129.9
Q ss_pred cCCCCCccceecccCCCCCCCCCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhcc---chHHHHHHHHHHHHHH
Q 026568 54 QANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQS---MSVDVIKKAYQATEDG 130 (236)
Q Consensus 54 ~~r~~~ED~~~i~~~~~~~~~~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~~---~~~~~l~~af~~~d~~ 130 (236)
+.|.++||++.+.... ..+..+|+|+|||||..+|+++++.+.+.+.+....... .+.+.|+++|.++++.
T Consensus 15 ~~r~~neD~~~~~~~~------~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (255)
T smart00332 15 GVRKPMEDAHVITPDL------SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKTDEE 88 (255)
T ss_pred CCCCCCcceEEEeccC------CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHHHH
Confidence 4578899998874321 134689999999999999999999999998876544332 3678899999999999
Q ss_pred HHHHHhhhCCCCCCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHhHHHHHHhcCCC
Q 026568 131 FFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHPD 210 (236)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~E~~RI~~~gp~ 210 (236)
+.+...... ....+|||++++++..+++|++|+||||+|+++. ++..+||.||++.++.|..||...++
T Consensus 89 ~~~~~~~~~----~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~------~~~~~lt~dh~~~~~~~~~~i~~~~~- 157 (255)
T smart00332 89 ILEELESLE----EDAGSGSTAVVALISGNKLYVANVGDSRAVLCRN------GKAVQLTEDHKPSNEDERARIEAAGG- 157 (255)
T ss_pred HHHhhhhcc----CCCCCCccEEEEEEECCEEEEEeccCceEEEEeC------CceeEcCCCCCCcCHHHHHHHHHcCC-
Confidence 987654422 2356899999999999999999999999999998 78899999999999999999999883
Q ss_pred CCCeEEEeCCeecccCcccccccCCC
Q 026568 211 DSQIVVLKHNVWRVKGLIQVTSMWKQ 236 (236)
Q Consensus 211 ~~~~vv~~~~~~rv~G~L~vsRaiG~ 236 (236)
. +.+ ++..+.+.+||++|+
T Consensus 158 ---~-~~~---~~~~~~~~lt~~~g~ 176 (255)
T smart00332 158 ---F-VIN---GRVNGVLALSRAIGD 176 (255)
T ss_pred ---E-EEC---CeECCeEecccccCC
Confidence 2 222 277778999999984
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.89 E-value=1.5e-22 Score=193.50 Aligned_cols=163 Identities=17% Similarity=0.213 Sum_probs=106.5
Q ss_pred CCCCCccceecccCCCCC-CCCC---CCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhc---cchHHHHHHHHHHH
Q 026568 55 ANNLLEDQSQIESGPLST-LESG---PYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQ---SMSVDVIKKAYQAT 127 (236)
Q Consensus 55 ~r~~~ED~~~i~~~~~~~-~~~~---~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~---~~~~~~l~~af~~~ 127 (236)
.|+.|||++.+....... .... ....||+|||||||+.+++.+++...+.|.+.+.... ....+.|+++|..+
T Consensus 386 ~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~~~~~L~~ai~~A 465 (645)
T PRK14559 386 QRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELPDEETIREAIYLA 465 (645)
T ss_pred CCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH
Confidence 388999988664321000 0001 1246899999999887666555555555444332211 12367899999999
Q ss_pred HHHHHHHHhhhCCCCCCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHhHHHHHHhc
Q 026568 128 EDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSM 207 (236)
Q Consensus 128 d~~~~~~~~~~~~~~~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~E~~RI~~~ 207 (236)
++.+.+...+.. ......||||+++++|.++++|++||||||+|++++ .++.+|||+||++.+...++.+.
T Consensus 466 N~~I~~~~~~~~--~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r-----~g~l~QLT~DHs~~~~lv~~Gi~-- 536 (645)
T PRK14559 466 NEAIYDLNQQNA--RSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTR-----KGGLEQLTVDHEVGQREIQRGVE-- 536 (645)
T ss_pred HHHHHHHhhhcc--cccCCCCCceeeeEEEECCEEEEEEecCceEEEEec-----CCeEEEeCCCCCHHHHHHHhCCC--
Confidence 999987543321 113356999999999999999999999999998854 17899999999986543322211
Q ss_pred CCCCCCeEEEeCCeecccCcccccccCCC
Q 026568 208 HPDDSQIVVLKHNVWRVKGLIQVTSMWKQ 236 (236)
Q Consensus 208 gp~~~~~vv~~~~~~rv~G~L~vsRaiG~ 236 (236)
+.. .. .|. +...+||+||+
T Consensus 537 ----~~~-a~----~~p-~~~~LTrALG~ 555 (645)
T PRK14559 537 ----PQI-AY----ARP-DAYQLTQALGP 555 (645)
T ss_pred ----HHH-Hh----cCc-ccceeeeccCC
Confidence 111 10 132 34788999985
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.82 E-value=9.8e-20 Score=158.70 Aligned_cols=120 Identities=28% Similarity=0.448 Sum_probs=99.8
Q ss_pred CCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhh---------------------------------------ccc
Q 026568 75 SGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQ---------------------------------------QSM 115 (236)
Q Consensus 75 ~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~---------------------------------------~~~ 115 (236)
...++.+|.+||||.|..+|-.++..|.+++.+.+.+- ...
T Consensus 140 ~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~L 219 (493)
T KOG1323|consen 140 PRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHL 219 (493)
T ss_pred CCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHh
Confidence 34567999999999999999999999999987655310 012
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCC
Q 026568 116 SVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNV 195 (236)
Q Consensus 116 ~~~~l~~af~~~d~~~~~~~~~~~~~~~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~ 195 (236)
+..+|+.||+.+|+.+.+... .|. ...|||+++++.--++|||||.|||||+|.|+ ++.+.||.+.+|
T Consensus 220 ViGAlEsAFqemDeqiarer~-~~~-----~~GGCtalvvi~llGKlYvaNAGDsRAIlVrn------deirplS~efTP 287 (493)
T KOG1323|consen 220 VIGALESAFQEMDEQIARERQ-VWR-----LPGGCTALVVIVLLGKLYVANAGDSRAILVRN------DEIRPLSKEFTP 287 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-hhc-----CCCCceEEEeeeeccceEEccCCCceEEEEec------CCeeecccccCc
Confidence 356899999999999876532 222 45799999999999999999999999999999 899999999988
Q ss_pred CCHhHHHHHHhcC
Q 026568 196 GIESVRQEMHSMH 208 (236)
Q Consensus 196 ~~~~E~~RI~~~g 208 (236)
+.||+||+...
T Consensus 288 --etERqRlQ~La 298 (493)
T KOG1323|consen 288 --ETERQRLQELA 298 (493)
T ss_pred --HHHHHHHHHHh
Confidence 88999999875
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.45 E-value=1.3e-12 Score=109.15 Aligned_cols=129 Identities=21% Similarity=0.247 Sum_probs=71.1
Q ss_pred eeecCCCCCccceecccCCCCCCCCCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhccchHHH-HHHHHHHHHH
Q 026568 51 AVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDV-IKKAYQATED 129 (236)
Q Consensus 51 ~~~~~r~~~ED~~~i~~~~~~~~~~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~-l~~af~~~d~ 129 (236)
+..+.+.++||++.+.. ..+..+++|+||+||...++.++..+.+.+.+.+.......... ....+..+.+
T Consensus 4 sh~~~~~~nqD~~~~~~--------~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 75 (212)
T PF13672_consen 4 SHRGRGAPNQDAFGIRT--------DDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKK 75 (212)
T ss_dssp ---TTSSS--EEEEEE---------TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCEEeee--------CCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 34456788999998531 12346779999999666655555555555554444333211111 2333333333
Q ss_pred HHHHHH------hhhCCCCCCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCC
Q 026568 130 GFFSLV------TKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNV 195 (236)
Q Consensus 130 ~~~~~~------~~~~~~~~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~ 195 (236)
++.... ... .......+||++++++.++.++++|+||||+|+... .++..+++.+|+.
T Consensus 76 ~~~~~~~~~~~~~~~---~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~-----~g~~~~l~~~~~~ 139 (212)
T PF13672_consen 76 EILSIVRAFQSAKQA---DLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRR-----NGEIQQLTDDHSG 139 (212)
T ss_dssp HHHHHH----HHHHH---SGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEE-----TTEEEE-S---BH
T ss_pred HHHHHhhhhhhhhhc---cccccccCceEEEEEEECCEEEEEEECCCeEEEEEC-----CCEEEEcCCCccc
Confidence 333211 000 113356789999999999999999999999976654 2888999999973
No 14
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.08 E-value=1.5e-09 Score=89.35 Aligned_cols=102 Identities=18% Similarity=0.105 Sum_probs=74.3
Q ss_pred CCCCCccceecccCCCCCCCCCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHH
Q 026568 55 ANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSL 134 (236)
Q Consensus 55 ~r~~~ED~~~i~~~~~~~~~~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~d~~~~~~ 134 (236)
+...-.|.+.+.. ..+...+|+|+||||+...|.+++..+...+.+..... ..+.+.+..+++.+...
T Consensus 13 ~~~~~GD~~~~~~-------~~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~-----~~~~~~l~~~n~~l~~~ 80 (193)
T smart00331 13 ATQVGGDFYDVVK-------LPEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG-----ISLSQILERLNRAIYEN 80 (193)
T ss_pred hHhcCccEEEEEE-------eCCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHHhc
Confidence 3445567765521 22235889999999988888888988888887765432 12455666777766543
Q ss_pred HhhhCCCCCCcccccceEEEEEE--ECCEEEEEEcCCCcEEEEee
Q 026568 135 VTKQWPMKPQIAAVGSCCLVGVI--SCGTLYIANLGDSRAVLGRL 177 (236)
Q Consensus 135 ~~~~~~~~~~~~~~GtTa~v~~i--~~~~l~vANvGDSRavl~r~ 177 (236)
....+|+|+++++| ..++++++|+||+|+++.+.
T Consensus 81 ---------~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~ 116 (193)
T smart00331 81 ---------GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRA 116 (193)
T ss_pred ---------CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEEC
Confidence 11457999999998 57899999999999999983
No 15
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=98.97 E-value=7.2e-09 Score=90.65 Aligned_cols=109 Identities=26% Similarity=0.310 Sum_probs=75.2
Q ss_pred CCccceecccCCCCCCCCCCCeEEEEEecCCCchH-----HHHHHHHHHHHHHHhhhhhhc---cchHHHHHHHHHHHHH
Q 026568 58 LLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPE-----TSRYINDHLFQHLKRFTSEQQ---SMSVDVIKKAYQATED 129 (236)
Q Consensus 58 ~~ED~~~i~~~~~~~~~~~~~~~lfgV~DGHGG~~-----aa~~~~~~l~~~l~~~~~~~~---~~~~~~l~~af~~~d~ 129 (236)
.=||++++..+ +...+.||+||.||+. .+.| +..|.....+..+... ..+...|.+||.++-+
T Consensus 90 ~GEDa~Fvss~--------~~~~v~GVADGVGGWa~~GiDpg~f-S~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~ 160 (330)
T KOG1379|consen 90 GGEDAWFVSSN--------PHAIVMGVADGVGGWAEYGIDPGAF-SRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKS 160 (330)
T ss_pred CCCcceeeccC--------cccceEEEccccchHhhcCcCHHHH-HHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhh
Confidence 46899988432 3457899999999654 5555 4455555544433322 4577788888766532
Q ss_pred HHHHHHhhhCCCCCCcccccceEEEEEEE--CCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCC
Q 026568 130 GFFSLVTKQWPMKPQIAAVGSCCLVGVIS--CGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEH 193 (236)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~GtTa~v~~i~--~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH 193 (236)
. +.....+|||.++++. +++||+||+|||-..+.|. +++++-|..+
T Consensus 161 ~------------~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~------G~vv~~S~~Q 208 (330)
T KOG1379|consen 161 Q------------KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVRE------GKVVFRSPEQ 208 (330)
T ss_pred c------------CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEEC------CEEEEcCchh
Confidence 1 1113467888888887 8999999999999999998 7777666543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.89 E-value=4.2e-09 Score=102.99 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=107.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccceEEEEEEE
Q 026568 79 GTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVIS 158 (236)
Q Consensus 79 ~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~d~~~~~~~~~~~~~~~~~~~~GtTa~v~~i~ 158 (236)
...||.|||-+-.+...+++..+..++.+.++... +..+.|+.+|...+.++-+.- ..-|..++.+.|.
T Consensus 551 ~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~-~et~~mr~~fl~~~rklg~~g----------~~lg~~~~~~~i~ 619 (1081)
T KOG0618|consen 551 QATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYG-NETEQMRNTFLRLNRKLGEEG----------QVLGGSVVLCQIV 619 (1081)
T ss_pred cceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHhhhhhhhh----------ccccchhhheeec
Confidence 37899999999999999999999999998877654 445669999999999885432 2235556666664
Q ss_pred C--------CEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCC-CCCCHhHHHHHHhcCCCCCCeEEEeCCeecccCccc
Q 026568 159 C--------GTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEH-NVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGLIQ 229 (236)
Q Consensus 159 ~--------~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH-~~~~~~E~~RI~~~gp~~~~~vv~~~~~~rv~G~L~ 229 (236)
. .++++||+|+|.+|++++ ++..++|+-. ...+++|.+||+..+ +++ ..+ .+++|...
T Consensus 620 ~d~~~~asS~~l~~Anvg~c~avls~n------g~~~p~t~~~~~~v~~eE~~RI~~~~----g~i-~ed--~k~ngvt~ 686 (1081)
T KOG0618|consen 620 EDSLSPASSKTLFAANVGTCMAVLSRN------GKPLPTTRSPMLEVDREEYKRIVDSK----GFI-TED--NKLNGVTS 686 (1081)
T ss_pred ccccCcccchhhhHhhhccchhhhhhc------CCcCcccccccccCCHHHHHHHHHhc----Cee-cCC--Ceeeceee
Confidence 3 379999999999999999 8888887766 345999999999998 444 333 49999999
Q ss_pred ccccCC
Q 026568 230 VTSMWK 235 (236)
Q Consensus 230 vsRaiG 235 (236)
.||+||
T Consensus 687 ~tR~iG 692 (1081)
T KOG0618|consen 687 STRAIG 692 (1081)
T ss_pred eeeecc
Confidence 999998
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=97.62 E-value=0.0007 Score=67.32 Aligned_cols=114 Identities=13% Similarity=0.037 Sum_probs=75.8
Q ss_pred CCCCCccceecccCCCCCCCCCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHH
Q 026568 55 ANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSL 134 (236)
Q Consensus 55 ~r~~~ED~~~i~~~~~~~~~~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~d~~~~~~ 134 (236)
+.....|.+.+.. .++...+++|.||.|....|...+..+.+.+.+.+.... . ...++..+|..+...
T Consensus 563 g~~vsGD~y~~~~-------l~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~-~----~~~ai~~lN~~L~~~ 630 (764)
T TIGR02865 563 GELVSGDSYSFGK-------LSAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGF-D----REVAIKTVNSILSLR 630 (764)
T ss_pred CCcccCceEEEEE-------ECCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCC-C----HHHHHHHHHHHHHhC
Confidence 4556788876521 123346889999999555555566666666655443221 1 245666777665432
Q ss_pred HhhhCCCCCCcccccceEEEEEEE--CCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCC
Q 026568 135 VTKQWPMKPQIAAVGSCCLVGVIS--CGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNV 195 (236)
Q Consensus 135 ~~~~~~~~~~~~~~GtTa~v~~i~--~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~ 195 (236)
. ...+.+|+.+++|+ .+++.++|+|+++.++.+. +++.+++..+-|
T Consensus 631 ~---------~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~------~~v~~i~s~~lP 678 (764)
T TIGR02865 631 S---------TDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRG------AKVEVIRSSNLP 678 (764)
T ss_pred C---------CCCeEEEEEEEEEECCCCeEEEEecCCCceEEEEC------CEEEEecCCCce
Confidence 1 13468999999996 6899999999999999887 677777766544
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=97.53 E-value=0.0022 Score=52.28 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=59.9
Q ss_pred CeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccceEEEEEE
Q 026568 78 YGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVI 157 (236)
Q Consensus 78 ~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~~~~~~~l~~af~~~d~~~~~~~~~~~~~~~~~~~~GtTa~v~~i 157 (236)
...++.|.|+.|-.-.|.+.+..+...+........ . ..+.+..+++.+...... ....+|++++.+
T Consensus 3 ~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~-~----p~~~l~~ln~~l~~~~~~--------~~~~~t~~~~~~ 69 (193)
T PF07228_consen 3 GRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGL-D----PEELLEALNRRLYRDLKG--------DNRYATACYAII 69 (193)
T ss_dssp TEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT-S----HHHHHHHHHHHHHHHTTT--------TSTTEEEEEEEE
T ss_pred CEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCC-C----HHHHHHHHHHHHHHHhhh--------ccccceEEEEEe
Confidence 357899999999555556666666666666553332 2 444566666666443221 135778888887
Q ss_pred E--CCEEEEEEcCCCcEEEEee
Q 026568 158 S--CGTLYIANLGDSRAVLGRL 177 (236)
Q Consensus 158 ~--~~~l~vANvGDSRavl~r~ 177 (236)
. .++++++|+|++++++++.
T Consensus 70 d~~~~~l~~~~aG~~~~l~~~~ 91 (193)
T PF07228_consen 70 DPETGTLTYANAGHPPPLLLRP 91 (193)
T ss_dssp ETTTTEEEEEEESSSEEEEEET
T ss_pred cccceEEEEeCCCCCCEEEEec
Confidence 6 6789999999999999997
No 19
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=27.66 E-value=93 Score=17.87 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=14.8
Q ss_pred CCEEEEEEcCCCcEEEEee
Q 026568 159 CGTLYIANLGDSRAVLGRL 177 (236)
Q Consensus 159 ~~~l~vANvGDSRavl~r~ 177 (236)
++.|||+|-|+..+.++..
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 5679999998888777653
No 20
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=24.23 E-value=1.3e+02 Score=16.28 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=14.8
Q ss_pred EECCEEEEEEcCCCcEEE
Q 026568 157 ISCGTLYIANLGDSRAVL 174 (236)
Q Consensus 157 i~~~~l~vANvGDSRavl 174 (236)
-.++.+||+-.+..|+..
T Consensus 10 ~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 10 DSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp ETTSEEEEEECCCTEEEE
T ss_pred eCCCCEEEEECCCCEEEE
Confidence 378899999999888754
No 21
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=21.38 E-value=1e+02 Score=27.14 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=17.7
Q ss_pred ccccceEEEEEEECCEEEEEEcCCC
Q 026568 146 AAVGSCCLVGVISCGTLYIANLGDS 170 (236)
Q Consensus 146 ~~~GtTa~v~~i~~~~l~vANvGDS 170 (236)
..+|||.++ .++++.+|.-|+|-+
T Consensus 130 ~LSGCT~i~-A~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 130 ALSGCTMIY-ARKDNYFYAYHTGKS 153 (281)
T ss_dssp -BSS-EEEE-EEETTEEEEEEEEES
T ss_pred ccCCCEEEE-EEcCCeEEEEEcCCC
Confidence 357777654 479999999999976
No 22
>COG4309 Uncharacterized conserved protein [Function unknown]
Probab=20.72 E-value=1.5e+02 Score=21.70 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=28.4
Q ss_pred ceEEEeCCCCCCCCCHhHHHHHHhcCCCCCCeEEEeCC--eeccc
Q 026568 183 EVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHN--VWRVK 225 (236)
Q Consensus 183 ~~~~~~LT~DH~~~~~~E~~RI~~~gp~~~~~vv~~~~--~~rv~ 225 (236)
.|+...++.||.|. .-+..+....|..=++.-..+| +|||.
T Consensus 33 ~Ge~leiisDHdP~--pL~~~L~~~~pg~f~wey~e~Gp~vwRv~ 75 (98)
T COG4309 33 EGESLEIISDHDPR--PLRYQLSTEFPGKFGWEYLENGPEVWRVE 75 (98)
T ss_pred CCCceEeecCCCcH--HHHHHhhhcCCccceeEEecCCCeEEEEE
Confidence 37788899999984 4456666666666566666666 57865
Done!