Query 026569
Match_columns 236
No_of_seqs 364 out of 3264
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 16:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 8.3E-31 2.8E-35 227.0 5.0 157 3-168 35-228 (275)
2 3tui_C Methionine import ATP-b 100.0 1.3E-29 4.3E-34 227.0 9.4 163 3-174 55-254 (366)
3 2onk_A Molybdate/tungstate ABC 100.0 2.8E-29 9.6E-34 213.4 8.8 149 4-161 26-204 (240)
4 3tif_A Uncharacterized ABC tra 100.0 6.2E-29 2.1E-33 210.6 9.1 145 3-156 32-217 (235)
5 2pcj_A ABC transporter, lipopr 100.0 9.7E-29 3.3E-33 207.9 9.9 143 3-155 31-210 (224)
6 2olj_A Amino acid ABC transpor 100.0 8.1E-29 2.8E-33 213.2 9.3 145 3-156 51-231 (263)
7 1b0u_A Histidine permease; ABC 100.0 6.1E-29 2.1E-33 213.9 8.2 146 3-157 33-226 (262)
8 3fvq_A Fe(3+) IONS import ATP- 100.0 7.6E-29 2.6E-33 221.6 9.0 157 3-168 31-223 (359)
9 3rlf_A Maltose/maltodextrin im 100.0 6.6E-29 2.3E-33 223.5 8.5 156 3-167 30-217 (381)
10 1vpl_A ABC transporter, ATP-bi 100.0 1.2E-28 4.2E-33 211.3 9.1 145 3-156 42-218 (256)
11 4g1u_C Hemin import ATP-bindin 99.9 2.3E-28 7.9E-33 210.7 9.0 155 3-164 38-228 (266)
12 2yyz_A Sugar ABC transporter, 99.9 2.3E-28 8E-33 218.7 9.2 151 3-162 30-212 (359)
13 2it1_A 362AA long hypothetical 99.9 2.7E-28 9.3E-33 218.5 9.7 153 3-164 30-214 (362)
14 1ji0_A ABC transporter; ATP bi 99.9 1.3E-28 4.5E-33 209.2 7.0 145 3-156 33-211 (240)
15 1z47_A CYSA, putative ABC-tran 99.9 2E-28 6.8E-33 218.8 8.3 152 3-163 42-225 (355)
16 3d31_A Sulfate/molybdate ABC t 99.9 3.6E-28 1.2E-32 216.7 9.1 151 3-162 27-206 (348)
17 1g6h_A High-affinity branched- 99.9 5E-28 1.7E-32 207.5 9.2 146 3-157 34-226 (257)
18 1v43_A Sugar-binding transport 99.9 3.5E-28 1.2E-32 218.5 7.2 153 3-164 38-222 (372)
19 1g29_1 MALK, maltose transport 99.9 5.3E-28 1.8E-32 217.5 8.1 156 3-167 30-223 (372)
20 1oxx_K GLCV, glucose, ABC tran 99.9 3.6E-28 1.2E-32 217.3 6.5 151 3-162 32-219 (353)
21 2yz2_A Putative ABC transporte 99.9 4.5E-28 1.5E-32 208.8 6.8 150 3-161 34-215 (266)
22 1sgw_A Putative ABC transporte 99.9 3.1E-27 1.1E-31 197.6 11.5 143 3-155 36-204 (214)
23 2ihy_A ABC transporter, ATP-bi 99.9 3.1E-28 1.1E-32 211.3 4.9 145 3-156 48-235 (279)
24 2qi9_C Vitamin B12 import ATP- 99.9 1.3E-27 4.6E-32 204.1 6.8 144 3-156 27-205 (249)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 4.6E-27 1.6E-31 200.8 7.7 139 3-150 30-209 (250)
26 2ff7_A Alpha-hemolysin translo 99.9 8.8E-27 3E-31 198.7 6.7 137 3-147 36-207 (247)
27 2zu0_C Probable ATP-dependent 99.9 1.7E-26 5.7E-31 199.1 7.8 142 3-152 47-233 (267)
28 2nq2_C Hypothetical ABC transp 99.9 2.8E-26 9.5E-31 196.3 8.7 144 3-156 32-201 (253)
29 1mv5_A LMRA, multidrug resista 99.9 1.6E-26 5.4E-31 196.6 6.8 136 3-146 29-200 (243)
30 2pjz_A Hypothetical protein ST 99.9 2.1E-26 7.2E-31 198.2 6.7 147 3-162 31-204 (263)
31 2ixe_A Antigen peptide transpo 99.9 1.8E-26 6E-31 199.4 5.8 135 3-146 46-219 (271)
32 3nh6_A ATP-binding cassette SU 99.9 1.9E-25 6.3E-30 196.1 6.8 151 3-162 81-266 (306)
33 2ghi_A Transport protein; mult 99.9 5.5E-25 1.9E-29 188.9 7.5 136 3-147 47-217 (260)
34 2pze_A Cystic fibrosis transme 99.9 4.2E-25 1.4E-29 186.3 3.7 135 3-146 35-192 (229)
35 2cbz_A Multidrug resistance-as 99.9 7.3E-25 2.5E-29 185.7 4.6 140 3-152 32-196 (237)
36 3gd7_A Fusion complex of cysti 99.9 1.1E-24 3.8E-29 196.9 4.3 148 3-161 48-230 (390)
37 3ozx_A RNAse L inhibitor; ATP 99.9 8.5E-24 2.9E-28 198.4 10.1 147 3-158 295-460 (538)
38 3b5x_A Lipid A export ATP-bind 99.9 8.1E-24 2.8E-28 200.2 7.4 135 3-145 370-540 (582)
39 3b60_A Lipid A export ATP-bind 99.9 1.8E-23 6.1E-28 197.9 8.6 136 3-146 370-541 (582)
40 2yl4_A ATP-binding cassette SU 99.9 2.5E-23 8.4E-28 197.4 8.7 152 3-163 371-560 (595)
41 3bk7_A ABC transporter ATP-bin 99.9 4.6E-23 1.6E-27 195.8 9.9 146 3-158 383-546 (607)
42 4a82_A Cystic fibrosis transme 99.9 1.9E-23 6.4E-28 197.6 7.1 137 3-147 368-539 (578)
43 1yqt_A RNAse L inhibitor; ATP- 99.9 5.4E-23 1.9E-27 193.0 9.4 145 3-156 48-230 (538)
44 3qf4_A ABC transporter, ATP-bi 99.9 3.3E-23 1.1E-27 196.3 7.3 154 3-180 370-558 (587)
45 3qf4_B Uncharacterized ABC tra 99.9 3.1E-23 1E-27 196.9 6.9 137 3-147 382-553 (598)
46 1yqt_A RNAse L inhibitor; ATP- 99.9 4.6E-23 1.6E-27 193.5 7.0 146 3-158 313-476 (538)
47 3bk7_A ABC transporter ATP-bin 99.9 9.5E-23 3.3E-27 193.6 9.1 145 3-156 118-300 (607)
48 3ozx_A RNAse L inhibitor; ATP 99.9 9.5E-23 3.2E-27 191.3 8.6 145 3-157 26-210 (538)
49 3j16_B RLI1P; ribosome recycli 99.9 1.1E-22 3.7E-27 193.2 8.4 162 3-174 379-560 (608)
50 2bbs_A Cystic fibrosis transme 99.9 2E-23 6.8E-28 181.9 2.5 147 3-159 65-233 (290)
51 3j16_B RLI1P; ribosome recycli 99.9 3.1E-22 1.1E-26 190.0 6.2 146 3-157 104-294 (608)
52 3g5u_A MCG1178, multidrug resi 99.8 6E-21 2E-25 194.5 6.8 137 3-147 1060-1233(1284)
53 4f4c_A Multidrug resistance pr 99.8 3.3E-21 1.1E-25 196.9 4.5 155 3-181 1106-1297(1321)
54 3g5u_A MCG1178, multidrug resi 99.8 7.6E-21 2.6E-25 193.7 5.6 161 3-172 417-612 (1284)
55 3ux8_A Excinuclease ABC, A sub 99.8 5.8E-20 2E-24 176.4 8.3 87 62-157 185-276 (670)
56 4f4c_A Multidrug resistance pr 99.8 4.3E-20 1.5E-24 188.7 7.7 163 3-174 445-642 (1321)
57 2iw3_A Elongation factor 3A; a 99.8 2.7E-20 9.2E-25 183.7 3.4 89 59-157 880-971 (986)
58 3b85_A Phosphate starvation-in 99.8 8.7E-20 3E-24 151.7 2.3 124 3-137 23-155 (208)
59 2iw3_A Elongation factor 3A; a 99.8 1.2E-18 4E-23 172.1 8.7 145 3-162 462-623 (986)
60 3ux8_A Excinuclease ABC, A sub 99.7 1.8E-18 6.3E-23 166.0 7.5 88 59-155 523-616 (670)
61 4gp7_A Metallophosphoesterase; 99.7 4.3E-19 1.5E-23 142.5 2.6 54 87-147 92-162 (171)
62 2npi_A Protein CLP1; CLP1-PCF1 99.7 3E-19 1E-23 164.6 0.9 134 3-153 139-313 (460)
63 1tq4_A IIGP1, interferon-induc 99.7 2.1E-18 7.1E-23 156.8 0.3 146 3-156 70-249 (413)
64 1ye8_A Protein THEP1, hypothet 99.7 1.1E-17 3.9E-22 135.5 4.6 131 4-151 2-150 (178)
65 2vf7_A UVRA2, excinuclease ABC 99.7 3.3E-17 1.1E-21 160.1 4.3 84 59-152 710-800 (842)
66 1yrb_A ATP(GTP)binding protein 99.6 1.2E-14 4E-19 123.0 15.6 224 2-235 14-242 (262)
67 4aby_A DNA repair protein RECN 99.6 2.4E-16 8.3E-21 142.4 5.1 53 81-137 296-353 (415)
68 3b9q_A Chloroplast SRP recepto 99.6 8.9E-16 3.1E-20 134.2 8.3 123 2-137 100-254 (302)
69 2pt7_A CAG-ALFA; ATPase, prote 99.6 3.4E-15 1.2E-19 132.0 11.3 119 3-160 172-290 (330)
70 3pih_A Uvrabc system protein A 99.6 8.5E-16 2.9E-20 151.3 8.1 79 59-145 785-869 (916)
71 2eyu_A Twitching motility prot 99.6 3.1E-15 1.1E-19 128.2 10.6 119 3-157 26-145 (261)
72 2ehv_A Hypothetical protein PH 99.6 1.9E-15 6.3E-20 126.6 7.3 129 3-147 31-185 (251)
73 2r6f_A Excinuclease ABC subuni 99.6 6.1E-16 2.1E-20 152.1 4.9 79 59-146 825-910 (972)
74 3szr_A Interferon-induced GTP- 99.6 2.9E-16 9.9E-21 149.3 2.5 156 5-180 48-229 (608)
75 2og2_A Putative signal recogni 99.6 1.4E-14 4.8E-19 129.4 11.8 123 2-137 157-311 (359)
76 1znw_A Guanylate kinase, GMP k 99.6 5.5E-17 1.9E-21 133.8 -4.0 59 92-157 137-201 (207)
77 3sop_A Neuronal-specific septi 99.5 4.8E-16 1.6E-20 133.9 0.8 122 2-136 2-146 (270)
78 2ygr_A Uvrabc system protein A 99.5 2.6E-15 8.9E-20 148.1 5.4 84 60-153 844-934 (993)
79 1e69_A Chromosome segregation 99.5 6.5E-14 2.2E-18 123.1 11.7 57 79-137 218-279 (322)
80 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 2.2E-14 7.6E-19 128.4 6.2 59 80-145 279-346 (365)
81 3jvv_A Twitching mobility prot 99.5 6.1E-14 2.1E-18 125.2 8.9 119 3-157 124-243 (356)
82 4a74_A DNA repair and recombin 99.5 3.9E-14 1.3E-18 117.0 5.8 37 3-39 26-69 (231)
83 2w0m_A SSO2452; RECA, SSPF, un 99.4 3E-13 1E-17 111.5 10.0 118 3-137 24-165 (235)
84 1rj9_A FTSY, signal recognitio 99.4 6.9E-13 2.4E-17 116.0 12.7 125 3-137 103-255 (304)
85 3thx_A DNA mismatch repair pro 99.4 5.3E-14 1.8E-18 139.0 5.8 126 3-160 663-800 (934)
86 2kjq_A DNAA-related protein; s 99.4 3.8E-13 1.3E-17 105.7 8.7 83 3-137 37-122 (149)
87 1tf7_A KAIC; homohexamer, hexa 99.4 1.2E-13 4.3E-18 128.9 5.4 122 3-137 282-414 (525)
88 1tf7_A KAIC; homohexamer, hexa 99.4 4.9E-14 1.7E-18 131.6 1.5 145 3-159 40-209 (525)
89 3aez_A Pantothenate kinase; tr 99.4 4.4E-14 1.5E-18 124.0 -0.1 106 2-112 90-209 (312)
90 2o8b_B DNA mismatch repair pro 99.4 2.7E-13 9.1E-18 135.3 4.8 127 3-154 790-922 (1022)
91 1cr0_A DNA primase/helicase; R 99.4 4.4E-13 1.5E-17 115.9 5.3 127 3-137 36-194 (296)
92 2ewv_A Twitching motility prot 99.4 1.5E-12 5E-17 116.9 8.8 118 3-157 137-256 (372)
93 3ec2_A DNA replication protein 99.3 1.8E-12 6.3E-17 103.8 8.0 99 3-137 39-140 (180)
94 3qkt_A DNA double-strand break 99.3 4.5E-12 1.5E-16 112.1 10.8 48 87-137 263-311 (339)
95 3thx_B DNA mismatch repair pro 99.3 1.5E-12 5.1E-17 128.4 7.6 114 3-137 674-793 (918)
96 2i3b_A HCR-ntpase, human cance 99.3 1.2E-13 4.3E-18 112.8 -0.8 36 3-40 2-37 (189)
97 1pzn_A RAD51, DNA repair and r 99.3 5E-12 1.7E-16 112.4 9.2 121 3-137 132-283 (349)
98 1z6g_A Guanylate kinase; struc 99.3 8E-14 2.8E-18 115.9 -2.9 135 3-154 24-204 (218)
99 1nlf_A Regulatory protein REPA 99.3 4.2E-12 1.4E-16 108.9 6.7 126 3-137 31-178 (279)
100 3e70_C DPA, signal recognition 99.3 7.2E-12 2.4E-16 110.6 7.7 128 2-141 129-280 (328)
101 1ewq_A DNA mismatch repair pro 99.3 2.9E-12 1E-16 124.4 5.3 106 3-137 577-695 (765)
102 2dpy_A FLII, flagellum-specifi 99.2 5.2E-12 1.8E-16 115.6 3.6 150 3-166 158-337 (438)
103 1wb9_A DNA mismatch repair pro 99.2 1.3E-11 4.3E-16 120.5 6.0 110 3-137 608-727 (800)
104 2obl_A ESCN; ATPase, hydrolase 99.2 2.1E-11 7.3E-16 108.3 6.7 150 3-165 72-247 (347)
105 3asz_A Uridine kinase; cytidin 99.2 6.8E-13 2.3E-17 108.8 -3.4 122 2-134 6-155 (211)
106 1s96_A Guanylate kinase, GMP k 99.2 4.9E-12 1.7E-16 105.5 1.4 113 3-136 17-136 (219)
107 1n0w_A DNA repair protein RAD5 99.2 1.3E-10 4.3E-15 96.6 9.8 37 3-39 25-68 (243)
108 1lw7_A Transcriptional regulat 99.1 2.3E-11 7.9E-16 108.4 5.1 129 3-137 171-326 (365)
109 2cvh_A DNA repair and recombin 99.1 1.7E-10 5.7E-15 94.5 9.7 118 3-137 21-153 (220)
110 2bbw_A Adenylate kinase 4, AK4 99.1 1.4E-11 4.7E-16 103.7 0.6 37 3-39 28-67 (246)
111 1sxj_E Activator 1 40 kDa subu 99.1 2.3E-10 7.9E-15 100.5 8.2 117 5-137 39-171 (354)
112 1ls1_A Signal recognition part 99.0 2.2E-09 7.4E-14 93.2 13.1 108 2-126 98-209 (295)
113 2gza_A Type IV secretion syste 99.0 8.5E-10 2.9E-14 98.4 10.5 125 3-159 176-301 (361)
114 1vma_A Cell division protein F 99.0 4.7E-10 1.6E-14 98.0 8.5 94 2-109 104-197 (306)
115 2bdt_A BH3686; alpha-beta prot 99.0 5.8E-11 2E-15 95.6 2.0 37 1-40 1-37 (189)
116 1htw_A HI0065; nucleotide-bind 99.0 1E-10 3.5E-15 92.8 2.6 38 3-41 34-71 (158)
117 3lda_A DNA repair protein RAD5 99.0 1.9E-09 6.6E-14 97.5 10.6 119 3-137 179-325 (400)
118 2qag_C Septin-7; cell cycle, c 99.0 3.8E-10 1.3E-14 102.6 5.5 126 3-141 32-179 (418)
119 2yhs_A FTSY, cell division pro 99.0 4.1E-09 1.4E-13 97.4 11.9 40 2-41 293-332 (503)
120 1pui_A ENGB, probable GTP-bind 98.9 3.5E-10 1.2E-14 91.8 3.7 125 2-131 26-201 (210)
121 2v9p_A Replication protein E1; 98.9 4.5E-11 1.6E-15 104.4 -2.8 98 3-119 127-233 (305)
122 2px0_A Flagellar biosynthesis 98.9 6.3E-09 2.1E-13 90.4 9.7 92 3-115 106-198 (296)
123 2qag_B Septin-6, protein NEDD5 98.9 1.9E-09 6.6E-14 98.0 5.7 47 87-136 167-215 (427)
124 2qnr_A Septin-2, protein NEDD5 98.8 1.4E-09 4.9E-14 94.6 4.0 37 3-40 19-56 (301)
125 2dr3_A UPF0273 protein PH0284; 98.8 3.6E-08 1.2E-12 81.7 11.5 40 98-137 128-170 (247)
126 3euj_A Chromosome partition pr 98.8 1.3E-09 4.4E-14 100.7 2.4 38 4-41 31-68 (483)
127 1f2t_B RAD50 ABC-ATPase; DNA d 98.8 9.3E-09 3.2E-13 80.5 6.4 66 79-152 56-130 (148)
128 3pih_A Uvrabc system protein A 98.8 2.6E-09 9E-14 105.3 3.5 128 21-157 387-538 (916)
129 1oix_A RAS-related protein RAB 98.7 6.5E-09 2.2E-13 83.7 4.0 37 3-39 30-77 (191)
130 1zp6_A Hypothetical protein AT 98.7 1.1E-08 3.7E-13 82.0 4.6 36 3-40 10-45 (191)
131 2zr9_A Protein RECA, recombina 98.7 4.6E-08 1.6E-12 86.8 9.0 117 3-137 62-195 (349)
132 1sq5_A Pantothenate kinase; P- 98.7 8.4E-09 2.9E-13 89.9 4.1 37 3-39 81-122 (308)
133 3kl4_A SRP54, signal recogniti 98.7 9E-08 3.1E-12 87.3 10.8 152 2-180 97-253 (433)
134 2qm8_A GTPase/ATPase; G protei 98.7 8.8E-09 3E-13 91.0 3.3 41 2-42 55-95 (337)
135 1qhl_A Protein (cell division 98.7 1E-09 3.5E-14 92.0 -2.7 37 4-40 29-65 (227)
136 3a00_A Guanylate kinase, GMP k 98.6 1E-08 3.5E-13 82.5 3.0 31 3-33 2-32 (186)
137 3c8u_A Fructokinase; YP_612366 98.6 8.8E-09 3E-13 84.3 1.9 39 2-40 22-63 (208)
138 1p9r_A General secretion pathw 98.6 2.1E-08 7.3E-13 91.1 4.1 38 3-40 168-205 (418)
139 2f1r_A Molybdopterin-guanine d 98.6 4.9E-09 1.7E-13 84.1 -0.2 39 1-39 1-42 (171)
140 1u0l_A Probable GTPase ENGC; p 98.6 2.2E-08 7.4E-13 87.0 3.9 38 3-40 170-210 (301)
141 3tqc_A Pantothenate kinase; bi 98.5 4.1E-08 1.4E-12 86.3 4.3 39 2-40 92-132 (321)
142 1udx_A The GTP-binding protein 98.5 1.5E-08 5E-13 92.1 1.3 138 3-155 158-320 (416)
143 1fnn_A CDC6P, cell division co 98.5 6.6E-07 2.2E-11 78.8 12.0 116 4-136 46-165 (389)
144 1lvg_A Guanylate kinase, GMP k 98.5 2.6E-08 8.8E-13 81.2 2.4 25 3-27 5-29 (198)
145 1rz3_A Hypothetical protein rb 98.5 3.7E-08 1.3E-12 80.2 3.1 39 2-40 22-60 (201)
146 2oap_1 GSPE-2, type II secreti 98.5 6E-08 2E-12 90.3 4.6 37 3-39 261-297 (511)
147 3tr0_A Guanylate kinase, GMP k 98.5 5.4E-08 1.9E-12 78.6 3.7 34 2-39 7-40 (205)
148 1nij_A Hypothetical protein YJ 98.5 4E-08 1.4E-12 85.9 2.7 39 3-41 5-51 (318)
149 1j8m_F SRP54, signal recogniti 98.5 1.4E-06 4.6E-11 75.7 12.3 39 3-41 99-137 (297)
150 3hr8_A Protein RECA; alpha and 98.5 6.5E-07 2.2E-11 79.7 10.5 89 3-109 62-150 (356)
151 1zu4_A FTSY; GTPase, signal re 98.5 1.7E-07 5.6E-12 82.3 6.2 39 3-41 106-144 (320)
152 2yv5_A YJEQ protein; hydrolase 98.5 9E-08 3.1E-12 83.2 4.4 37 3-40 166-205 (302)
153 1kgd_A CASK, peripheral plasma 98.4 8.5E-08 2.9E-12 76.7 3.0 39 2-40 5-44 (180)
154 1odf_A YGR205W, hypothetical 3 98.4 3.1E-08 1.1E-12 85.8 0.4 28 2-29 31-58 (290)
155 4eun_A Thermoresistant glucoki 98.4 1.1E-07 3.6E-12 77.3 3.4 34 3-40 30-63 (200)
156 3lnc_A Guanylate kinase, GMP k 98.4 8.1E-08 2.8E-12 79.6 2.6 26 3-28 28-54 (231)
157 2rcn_A Probable GTPase ENGC; Y 98.4 1.6E-07 5.4E-12 83.6 4.2 37 3-39 216-254 (358)
158 1l8q_A Chromosomal replication 98.4 3.1E-06 1.1E-10 73.5 12.3 98 4-137 39-138 (324)
159 4e22_A Cytidylate kinase; P-lo 98.4 3.4E-08 1.2E-12 83.5 -0.3 32 3-34 28-62 (252)
160 3t34_A Dynamin-related protein 98.4 1.3E-06 4.6E-11 77.3 9.7 31 4-34 36-68 (360)
161 2j41_A Guanylate kinase; GMP, 98.4 2.3E-07 8E-12 74.9 3.9 30 2-31 6-35 (207)
162 3uie_A Adenylyl-sulfate kinase 98.4 1.2E-07 4E-12 77.0 2.1 38 2-40 25-64 (200)
163 2z4s_A Chromosomal replication 98.4 1.7E-06 5.7E-11 78.9 10.0 99 4-137 132-234 (440)
164 3dm5_A SRP54, signal recogniti 98.4 1.2E-05 4.2E-10 73.3 15.7 103 2-118 100-204 (443)
165 1kag_A SKI, shikimate kinase I 98.3 2E-07 6.8E-12 73.3 3.1 28 1-28 3-30 (173)
166 1t9h_A YLOQ, probable GTPase E 98.3 7.1E-08 2.4E-12 84.2 0.5 38 3-40 174-214 (307)
167 2vp4_A Deoxynucleoside kinase; 98.3 2.3E-07 7.7E-12 77.1 3.4 34 3-40 21-54 (230)
168 2r6f_A Excinuclease ABC subuni 98.3 2.4E-07 8.1E-12 91.5 4.1 72 62-137 487-563 (972)
169 2r6a_A DNAB helicase, replicat 98.3 1.8E-06 6.2E-11 78.9 9.3 132 3-137 204-361 (454)
170 2vf7_A UVRA2, excinuclease ABC 98.3 5.1E-07 1.7E-11 88.4 5.4 72 62-137 362-438 (842)
171 3lxx_A GTPase IMAP family memb 98.3 6.1E-06 2.1E-10 68.4 11.3 27 3-29 30-56 (239)
172 2www_A Methylmalonic aciduria 98.3 3.1E-07 1.1E-11 81.3 3.5 41 3-43 75-115 (349)
173 1jjv_A Dephospho-COA kinase; P 98.3 5.1E-07 1.8E-11 73.2 4.2 32 1-37 1-32 (206)
174 3kta_A Chromosome segregation 98.3 3.7E-07 1.3E-11 72.5 3.2 29 4-32 28-56 (182)
175 2ygr_A Uvrabc system protein A 98.3 3.7E-07 1.3E-11 90.4 3.6 72 62-137 504-580 (993)
176 1knq_A Gluconate kinase; ALFA/ 98.2 5E-07 1.7E-11 71.3 3.5 34 3-40 9-42 (175)
177 3k53_A Ferrous iron transport 98.2 1.3E-06 4.4E-11 74.3 6.3 24 3-26 4-27 (271)
178 2jeo_A Uridine-cytidine kinase 98.2 4.9E-07 1.7E-11 75.7 3.6 25 2-26 25-49 (245)
179 3kta_B Chromosome segregation 98.2 1.5E-06 5.3E-11 69.6 6.0 57 79-137 63-124 (173)
180 3tau_A Guanylate kinase, GMP k 98.2 6.9E-07 2.4E-11 73.0 3.8 35 3-37 9-44 (208)
181 1cke_A CK, MSSA, protein (cyti 98.2 2.2E-07 7.6E-12 76.3 0.4 34 2-35 5-41 (227)
182 2ffh_A Protein (FFH); SRP54, s 98.2 1.3E-05 4.6E-10 72.8 12.1 40 2-41 98-137 (425)
183 2w58_A DNAI, primosome compone 98.2 5.3E-06 1.8E-10 66.9 8.4 34 3-36 55-88 (202)
184 2x8a_A Nuclear valosin-contain 98.2 9.9E-07 3.4E-11 75.5 4.2 35 4-40 46-80 (274)
185 3bos_A Putative DNA replicatio 98.2 4E-06 1.4E-10 68.5 7.5 90 3-137 53-145 (242)
186 2f9l_A RAB11B, member RAS onco 98.2 7.8E-07 2.7E-11 71.5 3.0 36 3-38 6-52 (199)
187 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 1.8E-06 6.1E-11 77.7 4.5 56 98-160 139-199 (392)
188 2v3c_C SRP54, signal recogniti 98.1 9.3E-06 3.2E-10 74.0 9.1 39 3-41 100-138 (432)
189 3pqc_A Probable GTP-binding pr 98.1 0.00021 7.3E-09 56.0 15.6 23 3-25 24-46 (195)
190 3cr8_A Sulfate adenylyltranfer 98.1 1.2E-06 4.1E-11 82.2 2.3 36 3-38 370-407 (552)
191 2ius_A DNA translocase FTSK; n 98.1 3.6E-06 1.2E-10 78.2 5.5 39 4-42 169-209 (512)
192 2ged_A SR-beta, signal recogni 98.0 1.3E-05 4.3E-10 63.6 8.0 24 3-26 49-72 (193)
193 4ad8_A DNA repair protein RECN 98.0 2.8E-06 9.7E-11 78.8 4.4 56 82-145 399-459 (517)
194 3ney_A 55 kDa erythrocyte memb 98.0 2.2E-06 7.4E-11 70.1 3.1 25 3-27 20-44 (197)
195 3k1j_A LON protease, ATP-depen 98.0 1.8E-05 6.1E-10 74.9 9.9 36 3-38 61-97 (604)
196 2p67_A LAO/AO transport system 98.0 2.2E-06 7.5E-11 75.5 3.3 40 3-42 57-96 (341)
197 1nrj_B SR-beta, signal recogni 98.0 4.2E-05 1.4E-09 61.9 10.5 24 3-26 13-36 (218)
198 4fcw_A Chaperone protein CLPB; 98.0 1.3E-05 4.3E-10 68.7 7.4 98 3-125 48-145 (311)
199 4dhe_A Probable GTP-binding pr 98.0 0.00027 9.1E-09 57.2 14.9 23 3-25 30-52 (223)
200 2if2_A Dephospho-COA kinase; a 98.0 3.5E-06 1.2E-10 68.0 3.3 22 3-24 2-23 (204)
201 1ixz_A ATP-dependent metallopr 98.0 4.6E-06 1.6E-10 69.8 4.2 33 4-38 51-83 (254)
202 2qt1_A Nicotinamide riboside k 98.0 6.4E-06 2.2E-10 66.7 4.9 26 2-27 21-46 (207)
203 1u94_A RECA protein, recombina 98.0 2E-05 7E-10 69.9 8.5 117 3-137 64-197 (356)
204 2ce7_A Cell division protein F 98.0 3.5E-05 1.2E-09 71.0 10.3 24 3-26 50-73 (476)
205 1np6_A Molybdopterin-guanine d 97.9 4.3E-06 1.5E-10 66.9 3.4 39 1-39 5-43 (174)
206 1in4_A RUVB, holliday junction 97.9 8.3E-07 2.8E-11 77.9 -1.0 36 3-38 52-91 (334)
207 1iy2_A ATP-dependent metallopr 97.9 4.9E-06 1.7E-10 70.7 3.8 33 4-38 75-107 (278)
208 2yvu_A Probable adenylyl-sulfa 97.9 3.8E-06 1.3E-10 67.0 2.9 36 2-37 13-48 (186)
209 2pez_A Bifunctional 3'-phospho 97.9 3.9E-06 1.3E-10 66.5 2.9 36 2-38 5-42 (179)
210 3n70_A Transport activator; si 97.9 5.9E-05 2E-09 57.9 9.5 88 4-137 26-113 (145)
211 2qby_A CDC6 homolog 1, cell di 97.9 6.1E-06 2.1E-10 72.2 4.3 27 3-29 46-72 (386)
212 1ly1_A Polynucleotide kinase; 97.9 6.8E-06 2.3E-10 64.5 3.8 24 1-24 1-24 (181)
213 1v5w_A DMC1, meiotic recombina 97.9 0.00013 4.4E-09 64.2 12.4 23 3-25 123-145 (343)
214 1m7g_A Adenylylsulfate kinase; 97.9 3.4E-06 1.2E-10 68.8 1.6 36 2-37 25-62 (211)
215 3t61_A Gluconokinase; PSI-biol 97.9 7E-06 2.4E-10 66.3 3.3 24 3-26 19-42 (202)
216 1xp8_A RECA protein, recombina 97.8 7.1E-05 2.4E-09 66.7 9.8 117 3-137 75-208 (366)
217 2v1u_A Cell division control p 97.8 5.5E-05 1.9E-09 66.1 8.9 25 4-28 46-70 (387)
218 1w1w_A Structural maintenance 97.8 6.8E-06 2.3E-10 74.4 3.1 56 81-137 334-394 (430)
219 2o5v_A DNA replication and rep 97.8 4.1E-06 1.4E-10 74.5 1.4 44 80-126 265-320 (359)
220 2qgz_A Helicase loader, putati 97.8 3.7E-05 1.3E-09 66.7 7.3 33 3-35 153-186 (308)
221 2j37_W Signal recognition part 97.8 0.00026 8.8E-09 65.6 13.3 38 3-40 102-139 (504)
222 2z43_A DNA repair and recombin 97.8 0.00014 4.9E-09 63.3 10.8 24 3-26 108-131 (324)
223 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 1.2E-05 4E-10 62.5 3.4 22 4-25 25-46 (149)
224 3h4m_A Proteasome-activating n 97.8 0.00017 5.8E-09 60.9 10.6 24 3-26 52-75 (285)
225 2r8r_A Sensor protein; KDPD, P 97.8 4.5E-05 1.5E-09 63.6 6.7 115 2-136 6-123 (228)
226 2o5v_A DNA replication and rep 97.8 2.1E-05 7.1E-10 70.0 4.8 21 4-24 28-48 (359)
227 4eaq_A DTMP kinase, thymidylat 97.7 2E-05 6.7E-10 65.6 4.2 34 2-36 26-59 (229)
228 1qhx_A CPT, protein (chloramph 97.7 1.7E-05 5.8E-10 62.4 3.6 27 1-27 2-28 (178)
229 1w1w_A Structural maintenance 97.7 4.8E-05 1.6E-09 68.8 6.5 27 3-29 27-53 (430)
230 2e87_A Hypothetical protein PH 97.7 1.1E-05 3.6E-10 71.4 2.0 24 3-26 168-191 (357)
231 3vaa_A Shikimate kinase, SK; s 97.7 2.2E-05 7.5E-10 63.4 3.4 24 3-26 26-49 (199)
232 3kb2_A SPBC2 prophage-derived 97.7 2.2E-05 7.7E-10 61.0 3.3 23 4-26 3-25 (173)
233 3co5_A Putative two-component 97.7 5.8E-05 2E-09 57.8 5.5 42 98-140 75-116 (143)
234 1xjc_A MOBB protein homolog; s 97.7 2.4E-05 8.1E-10 62.4 3.3 38 3-40 5-42 (169)
235 2wji_A Ferrous iron transport 97.7 4E-05 1.4E-09 59.5 4.5 24 3-26 4-27 (165)
236 2qor_A Guanylate kinase; phosp 97.6 2.4E-05 8.3E-10 63.3 3.2 25 3-27 13-37 (204)
237 3def_A T7I23.11 protein; chlor 97.6 7.9E-05 2.7E-09 62.8 6.4 22 3-24 37-58 (262)
238 3lw7_A Adenylate kinase relate 97.6 2.6E-05 9E-10 60.3 3.2 20 3-22 2-21 (179)
239 3cm0_A Adenylate kinase; ATP-b 97.6 3E-05 1E-09 61.4 3.5 25 2-26 4-28 (186)
240 3ake_A Cytidylate kinase; CMP 97.6 3E-05 1E-09 62.3 3.5 26 1-26 1-26 (208)
241 2x2e_A Dynamin-1; nitration, h 97.6 0.001 3.5E-08 58.5 13.5 23 4-26 33-55 (353)
242 3r20_A Cytidylate kinase; stru 97.6 1.5E-05 5E-10 66.8 1.2 25 2-26 9-33 (233)
243 1vht_A Dephospho-COA kinase; s 97.6 4E-05 1.4E-09 62.5 3.8 23 2-24 4-26 (218)
244 1mky_A Probable GTP-binding pr 97.6 4.9E-05 1.7E-09 69.0 4.7 36 3-38 181-228 (439)
245 4a1f_A DNAB helicase, replicat 97.6 0.00011 3.7E-09 64.9 6.7 37 3-39 47-83 (338)
246 1uf9_A TT1252 protein; P-loop, 97.6 4.8E-05 1.6E-09 60.8 4.1 30 2-36 8-37 (203)
247 1lnz_A SPO0B-associated GTP-bi 97.6 5.5E-05 1.9E-09 66.8 4.8 118 99-221 206-331 (342)
248 2p5t_B PEZT; postsegregational 97.6 2.9E-05 9.9E-10 65.2 2.9 35 2-38 32-66 (253)
249 1via_A Shikimate kinase; struc 97.6 3.4E-05 1.2E-09 60.7 3.1 23 4-26 6-28 (175)
250 1ypw_A Transitional endoplasmi 97.6 0.00017 5.8E-09 70.5 8.6 26 3-28 239-264 (806)
251 1qf9_A UMP/CMP kinase, protein 97.6 4.2E-05 1.4E-09 60.5 3.5 26 1-26 5-30 (194)
252 3b9p_A CG5977-PA, isoform A; A 97.6 0.0002 7E-09 60.9 8.1 24 3-26 55-78 (297)
253 2iyv_A Shikimate kinase, SK; t 97.6 3.5E-05 1.2E-09 61.0 3.0 26 1-26 1-26 (184)
254 1gtv_A TMK, thymidylate kinase 97.6 1E-05 3.4E-10 65.5 -0.3 32 4-35 2-33 (214)
255 2qtf_A Protein HFLX, GTP-bindi 97.6 4.2E-05 1.4E-09 68.1 3.7 24 4-27 181-204 (364)
256 3nwj_A ATSK2; P loop, shikimat 97.5 3.9E-05 1.3E-09 64.8 3.3 25 2-26 48-72 (250)
257 1tev_A UMP-CMP kinase; ploop, 97.5 4.9E-05 1.7E-09 60.1 3.6 25 2-26 3-27 (196)
258 1e6c_A Shikimate kinase; phosp 97.5 4.5E-05 1.5E-09 59.5 3.3 26 1-26 1-26 (173)
259 2zej_A Dardarin, leucine-rich 97.5 4.2E-05 1.4E-09 60.4 3.2 26 3-28 3-28 (184)
260 2rhm_A Putative kinase; P-loop 97.5 5E-05 1.7E-09 60.2 3.5 25 2-26 5-29 (193)
261 3qks_A DNA double-strand break 97.5 4.5E-05 1.5E-09 62.1 3.4 23 4-26 25-47 (203)
262 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00066 2.3E-08 56.3 10.5 23 4-26 41-63 (262)
263 2xxa_A Signal recognition part 97.5 0.0012 4.1E-08 60.0 12.9 39 3-41 101-140 (433)
264 1kht_A Adenylate kinase; phosp 97.5 5.4E-05 1.8E-09 59.8 3.5 26 2-27 3-28 (192)
265 1sxj_D Activator 1 41 kDa subu 97.5 9.8E-05 3.3E-09 64.0 5.4 23 5-27 61-83 (353)
266 3auy_A DNA double-strand break 97.5 0.00011 3.8E-09 65.2 5.8 46 88-137 296-343 (371)
267 1svm_A Large T antigen; AAA+ f 97.5 5E-05 1.7E-09 68.0 3.4 30 3-35 170-199 (377)
268 2ze6_A Isopentenyl transferase 97.5 5.2E-05 1.8E-09 63.8 3.4 24 3-26 2-25 (253)
269 3trf_A Shikimate kinase, SK; a 97.5 5.7E-05 1.9E-09 59.7 3.4 25 2-26 5-29 (185)
270 2wjg_A FEOB, ferrous iron tran 97.5 5.6E-05 1.9E-09 59.4 3.4 23 3-25 8-30 (188)
271 2b8t_A Thymidine kinase; deoxy 97.5 0.0001 3.4E-09 61.3 4.9 34 3-36 13-46 (223)
272 2bwj_A Adenylate kinase 5; pho 97.5 4.6E-05 1.6E-09 60.8 2.7 25 2-26 12-36 (199)
273 2ohf_A Protein OLA1, GTP-bindi 97.5 5.6E-05 1.9E-09 68.0 3.5 36 2-37 22-68 (396)
274 2jaq_A Deoxyguanosine kinase; 97.5 6.3E-05 2.1E-09 60.1 3.4 24 4-27 2-25 (205)
275 2plr_A DTMP kinase, probable t 97.5 9.1E-05 3.1E-09 59.4 4.4 32 2-34 4-35 (213)
276 3m6a_A ATP-dependent protease 97.5 2.9E-05 1E-09 72.6 1.5 35 3-37 109-143 (543)
277 2gj8_A MNME, tRNA modification 97.4 7.7E-05 2.6E-09 58.5 3.5 24 3-26 5-28 (172)
278 1jal_A YCHF protein; nucleotid 97.4 0.00011 3.8E-09 65.3 4.8 24 1-24 1-24 (363)
279 3io5_A Recombination and repai 97.4 0.00055 1.9E-08 59.9 8.9 117 4-137 30-169 (333)
280 3d3q_A TRNA delta(2)-isopenten 97.4 0.00011 3.8E-09 64.8 4.5 27 1-27 6-32 (340)
281 1q3t_A Cytidylate kinase; nucl 97.4 8E-05 2.7E-09 61.7 3.4 25 2-26 16-40 (236)
282 1ltq_A Polynucleotide kinase; 97.4 8.9E-05 3E-09 63.3 3.8 24 1-24 1-24 (301)
283 4ag6_A VIRB4 ATPase, type IV s 97.4 8.1E-05 2.8E-09 66.4 3.5 35 3-37 36-70 (392)
284 1nks_A Adenylate kinase; therm 97.4 8.4E-05 2.9E-09 58.7 3.2 25 4-28 3-27 (194)
285 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.0018 6.1E-08 56.3 11.8 24 3-26 46-69 (322)
286 2v54_A DTMP kinase, thymidylat 97.4 0.00012 4E-09 58.7 3.8 25 2-26 4-28 (204)
287 1y63_A LMAJ004144AAA protein; 97.4 0.00011 3.7E-09 58.5 3.5 23 3-25 11-33 (184)
288 1gvn_B Zeta; postsegregational 97.3 9.6E-05 3.3E-09 63.5 3.2 33 2-36 33-65 (287)
289 1ex7_A Guanylate kinase; subst 97.3 0.0001 3.5E-09 59.5 3.1 22 5-26 4-25 (186)
290 2wwf_A Thymidilate kinase, put 97.3 0.00011 3.9E-09 59.1 3.4 26 2-27 10-35 (212)
291 1sxj_C Activator 1 40 kDa subu 97.3 4.9E-05 1.7E-09 66.4 1.2 35 5-39 49-83 (340)
292 2cdn_A Adenylate kinase; phosp 97.3 0.00012 4.2E-09 58.8 3.6 25 2-26 20-44 (201)
293 2xau_A PRE-mRNA-splicing facto 97.3 0.00017 6E-09 70.1 5.1 25 4-28 111-135 (773)
294 3cmu_A Protein RECA, recombina 97.3 0.00067 2.3E-08 71.7 9.7 119 3-139 1428-1563(2050)
295 2c95_A Adenylate kinase 1; tra 97.3 0.00012 4.1E-09 58.1 3.3 24 3-26 10-33 (196)
296 2i1q_A DNA repair and recombin 97.3 0.0016 5.3E-08 56.4 10.7 22 3-24 99-120 (322)
297 2dhr_A FTSH; AAA+ protein, hex 97.3 0.00015 5.2E-09 67.1 4.4 36 3-40 65-100 (499)
298 1ega_A Protein (GTP-binding pr 97.3 0.00011 3.9E-09 63.4 3.3 24 3-26 9-32 (301)
299 3iij_A Coilin-interacting nucl 97.3 0.00013 4.3E-09 57.6 3.3 24 3-26 12-35 (180)
300 2bjv_A PSP operon transcriptio 97.3 0.00088 3E-08 56.0 8.7 33 4-36 31-63 (265)
301 1uj2_A Uridine-cytidine kinase 97.3 0.00014 4.9E-09 60.8 3.6 26 2-27 22-47 (252)
302 1lv7_A FTSH; alpha/beta domain 97.3 0.00014 4.6E-09 60.8 3.4 24 4-27 47-70 (257)
303 2z0h_A DTMP kinase, thymidylat 97.3 0.00014 4.9E-09 57.7 3.3 25 4-28 2-26 (197)
304 1ojl_A Transcriptional regulat 97.3 0.00098 3.4E-08 57.5 8.8 29 4-32 27-55 (304)
305 3fb4_A Adenylate kinase; psych 97.2 0.00016 5.3E-09 58.7 3.3 23 4-26 2-24 (216)
306 2grj_A Dephospho-COA kinase; T 97.2 0.00017 5.7E-09 58.4 3.5 23 3-25 13-35 (192)
307 2pbr_A DTMP kinase, thymidylat 97.2 0.00017 5.7E-09 57.1 3.3 24 4-27 2-25 (195)
308 1ukz_A Uridylate kinase; trans 97.2 0.00018 6.3E-09 57.6 3.6 24 3-26 16-39 (203)
309 2j69_A Bacterial dynamin-like 97.2 0.0022 7.6E-08 61.6 11.7 24 2-25 69-92 (695)
310 3umf_A Adenylate kinase; rossm 97.2 0.00019 6.4E-09 59.4 3.4 24 3-26 30-53 (217)
311 3dl0_A Adenylate kinase; phosp 97.2 0.00017 5.8E-09 58.5 3.1 23 4-26 2-24 (216)
312 3sr0_A Adenylate kinase; phosp 97.2 0.00019 6.5E-09 58.8 3.3 23 4-26 2-24 (206)
313 1nn5_A Similar to deoxythymidy 97.2 0.00019 6.6E-09 57.8 3.2 26 2-27 9-34 (215)
314 2vli_A Antibiotic resistance p 97.2 0.00012 4.1E-09 57.6 1.9 24 3-26 6-29 (183)
315 1zak_A Adenylate kinase; ATP:A 97.2 0.00019 6.4E-09 58.7 3.1 24 3-26 6-29 (222)
316 2ce2_X GTPase HRAS; signaling 97.2 0.00024 8.3E-09 53.8 3.6 25 1-25 1-26 (166)
317 1kao_A RAP2A; GTP-binding prot 97.2 0.00027 9.2E-09 53.8 3.8 22 3-24 4-25 (167)
318 3p32_A Probable GTPase RV1496/ 97.2 0.00025 8.6E-09 62.5 4.1 41 2-42 79-119 (355)
319 2pt5_A Shikimate kinase, SK; a 97.2 0.00022 7.7E-09 55.2 3.4 23 4-26 2-24 (168)
320 1m2o_B GTP-binding protein SAR 97.2 0.00024 8.1E-09 56.5 3.5 22 3-24 24-45 (190)
321 1f6b_A SAR1; gtpases, N-termin 97.2 0.00025 8.6E-09 56.7 3.6 22 3-24 26-47 (198)
322 2f6r_A COA synthase, bifunctio 97.1 0.00023 7.8E-09 60.8 3.4 22 3-24 76-97 (281)
323 3crm_A TRNA delta(2)-isopenten 97.1 0.00025 8.7E-09 62.0 3.8 27 1-27 4-30 (323)
324 1aky_A Adenylate kinase; ATP:A 97.1 0.00024 8.3E-09 57.9 3.5 24 3-26 5-28 (220)
325 1zd8_A GTP:AMP phosphotransfer 97.1 0.00023 7.7E-09 58.4 3.3 24 3-26 8-31 (227)
326 2wsm_A Hydrogenase expression/ 97.1 0.00031 1E-08 56.9 4.0 37 3-40 31-67 (221)
327 1zuh_A Shikimate kinase; alpha 97.1 0.00025 8.6E-09 55.2 3.4 24 3-26 8-31 (168)
328 3tlx_A Adenylate kinase 2; str 97.1 0.00026 8.9E-09 59.1 3.6 24 3-26 30-53 (243)
329 1a7j_A Phosphoribulokinase; tr 97.1 7.1E-05 2.4E-09 64.4 0.1 26 2-27 5-30 (290)
330 2qag_A Septin-2, protein NEDD5 97.1 0.0002 6.8E-09 63.5 2.9 29 3-31 38-66 (361)
331 3bh0_A DNAB-like replicative h 97.1 0.0025 8.6E-08 55.2 9.9 35 3-37 69-103 (315)
332 1z2a_A RAS-related protein RAB 97.1 0.0003 1E-08 53.7 3.5 23 3-25 6-28 (168)
333 4b4t_J 26S protease regulatory 97.1 0.0056 1.9E-07 55.1 12.2 25 3-27 183-207 (405)
334 2dyk_A GTP-binding protein; GT 97.1 0.00027 9.3E-09 53.7 3.2 23 3-25 2-24 (161)
335 1c1y_A RAS-related protein RAP 97.1 0.00036 1.2E-08 53.2 3.7 23 3-25 4-26 (167)
336 3hu3_A Transitional endoplasmi 97.1 0.0027 9.2E-08 58.5 10.2 24 3-26 239-262 (489)
337 2q6t_A DNAB replication FORK h 97.1 0.0022 7.5E-08 58.2 9.4 37 3-39 201-238 (444)
338 2xb4_A Adenylate kinase; ATP-b 97.1 0.00031 1.1E-08 57.7 3.4 23 4-26 2-24 (223)
339 1jr3_A DNA polymerase III subu 97.1 0.0029 9.8E-08 55.1 9.8 26 3-28 39-64 (373)
340 2erx_A GTP-binding protein DI- 97.0 0.00039 1.3E-08 53.2 3.6 22 3-24 4-25 (172)
341 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00038 1.3E-08 58.6 3.8 25 3-27 5-29 (260)
342 2nzj_A GTP-binding protein REM 97.0 0.00038 1.3E-08 53.6 3.5 23 3-25 5-27 (175)
343 1u8z_A RAS-related protein RAL 97.0 0.00039 1.3E-08 52.9 3.5 23 3-25 5-27 (168)
344 3q72_A GTP-binding protein RAD 97.0 0.00025 8.6E-09 54.2 2.4 23 3-25 3-25 (166)
345 1g16_A RAS-related protein SEC 97.0 0.00032 1.1E-08 53.7 2.9 23 3-25 4-26 (170)
346 1ky3_A GTP-binding protein YPT 97.0 0.0004 1.4E-08 53.7 3.5 23 3-25 9-31 (182)
347 1z0j_A RAB-22, RAS-related pro 97.0 0.00042 1.4E-08 53.0 3.5 23 3-25 7-29 (170)
348 1e4v_A Adenylate kinase; trans 97.0 0.00031 1.1E-08 57.0 2.9 22 5-26 3-24 (214)
349 2lkc_A Translation initiation 97.0 0.00044 1.5E-08 53.5 3.6 23 3-25 9-31 (178)
350 3q85_A GTP-binding protein REM 97.0 0.00043 1.5E-08 53.1 3.4 23 3-25 3-25 (169)
351 4ad8_A DNA repair protein RECN 97.0 0.00014 4.6E-09 67.5 0.7 22 4-25 62-83 (517)
352 1ek0_A Protein (GTP-binding pr 97.0 0.00044 1.5E-08 52.8 3.5 23 3-25 4-26 (170)
353 1z08_A RAS-related protein RAB 97.0 0.00045 1.5E-08 52.9 3.5 23 3-25 7-29 (170)
354 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00045 1.5E-08 53.4 3.5 23 3-25 8-30 (177)
355 3b1v_A Ferrous iron uptake tra 97.0 0.00042 1.4E-08 59.0 3.6 25 2-26 3-27 (272)
356 2h92_A Cytidylate kinase; ross 97.0 0.00038 1.3E-08 56.5 3.2 25 2-26 3-27 (219)
357 3auy_A DNA double-strand break 97.0 0.00035 1.2E-08 61.9 3.2 21 3-23 26-46 (371)
358 1fzq_A ADP-ribosylation factor 97.0 0.00036 1.2E-08 54.9 2.8 23 3-25 17-39 (181)
359 1svi_A GTP-binding protein YSX 97.0 0.0004 1.4E-08 54.7 3.1 23 3-25 24-46 (195)
360 3clv_A RAB5 protein, putative; 97.0 0.00052 1.8E-08 53.9 3.7 24 3-26 8-31 (208)
361 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.0019 6.5E-08 56.6 7.5 23 3-25 124-146 (331)
362 3ihw_A Centg3; RAS, centaurin, 97.0 0.00078 2.7E-08 53.2 4.7 23 3-25 21-43 (184)
363 3tw8_B RAS-related protein RAB 97.0 0.0004 1.4E-08 53.7 3.0 23 3-25 10-32 (181)
364 1upt_A ARL1, ADP-ribosylation 96.9 0.00052 1.8E-08 52.6 3.6 22 3-24 8-29 (171)
365 1r2q_A RAS-related protein RAB 96.9 0.00048 1.7E-08 52.5 3.3 22 3-24 7-28 (170)
366 2fn4_A P23, RAS-related protei 96.9 0.00049 1.7E-08 53.2 3.4 23 3-25 10-32 (181)
367 4dsu_A GTPase KRAS, isoform 2B 96.9 0.00049 1.7E-08 53.6 3.4 23 3-25 5-27 (189)
368 3zvr_A Dynamin-1; hydrolase, D 96.9 0.0085 2.9E-07 58.1 12.5 23 4-26 53-75 (772)
369 3cf0_A Transitional endoplasmi 96.9 0.00045 1.5E-08 59.4 3.3 25 3-27 50-74 (301)
370 2cxx_A Probable GTP-binding pr 96.9 0.0004 1.4E-08 54.3 2.7 23 3-25 2-24 (190)
371 3be4_A Adenylate kinase; malar 96.9 0.00049 1.7E-08 56.1 3.3 24 3-26 6-29 (217)
372 1moz_A ARL1, ADP-ribosylation 96.9 0.0003 1E-08 54.8 1.9 22 3-24 19-40 (183)
373 1r8s_A ADP-ribosylation factor 96.9 0.00052 1.8E-08 52.3 3.1 21 4-24 2-22 (164)
374 2hxs_A RAB-26, RAS-related pro 96.9 0.00064 2.2E-08 52.5 3.6 23 3-25 7-29 (178)
375 2y8e_A RAB-protein 6, GH09086P 96.9 0.00052 1.8E-08 52.9 3.1 23 3-25 15-37 (179)
376 2oil_A CATX-8, RAS-related pro 96.9 0.0006 2.1E-08 53.7 3.5 23 3-25 26-48 (193)
377 1z0f_A RAB14, member RAS oncog 96.9 0.00062 2.1E-08 52.5 3.5 23 3-25 16-38 (179)
378 3con_A GTPase NRAS; structural 96.9 0.00062 2.1E-08 53.5 3.5 23 3-25 22-44 (190)
379 3bc1_A RAS-related protein RAB 96.9 0.00063 2.2E-08 53.1 3.5 23 3-25 12-34 (195)
380 3i8s_A Ferrous iron transport 96.9 0.00062 2.1E-08 57.8 3.7 24 2-25 3-26 (274)
381 3t1o_A Gliding protein MGLA; G 96.9 0.00072 2.5E-08 53.0 3.8 26 3-28 15-40 (198)
382 3pfi_A Holliday junction ATP-d 96.9 0.0026 8.9E-08 54.9 7.6 23 4-26 57-79 (338)
383 2hf9_A Probable hydrogenase ni 96.8 0.00069 2.3E-08 55.0 3.7 36 3-39 39-74 (226)
384 1jbk_A CLPB protein; beta barr 96.8 0.00066 2.3E-08 52.7 3.4 24 4-27 45-68 (195)
385 2a9k_A RAS-related protein RAL 96.8 0.00069 2.4E-08 52.6 3.5 23 3-25 19-41 (187)
386 2g6b_A RAS-related protein RAB 96.8 0.0007 2.4E-08 52.4 3.5 23 3-25 11-33 (180)
387 2efe_B Small GTP-binding prote 96.8 0.00062 2.1E-08 52.7 3.2 23 3-25 13-35 (181)
388 2zts_A Putative uncharacterize 96.8 0.001 3.5E-08 54.5 4.6 36 3-38 31-67 (251)
389 1ak2_A Adenylate kinase isoenz 96.8 0.00069 2.4E-08 55.8 3.5 24 3-26 17-40 (233)
390 1ksh_A ARF-like protein 2; sma 96.8 0.00071 2.4E-08 52.9 3.3 23 3-25 19-41 (186)
391 3foz_A TRNA delta(2)-isopenten 96.8 0.00078 2.7E-08 58.7 3.8 25 2-26 10-34 (316)
392 2bme_A RAB4A, RAS-related prot 96.8 0.00072 2.5E-08 52.7 3.3 23 3-25 11-33 (186)
393 3kkq_A RAS-related protein M-R 96.8 0.00079 2.7E-08 52.4 3.5 23 3-25 19-41 (183)
394 1vg8_A RAS-related protein RAB 96.8 0.00079 2.7E-08 53.5 3.5 24 3-26 9-32 (207)
395 2bov_A RAla, RAS-related prote 96.8 0.00079 2.7E-08 53.4 3.5 23 3-25 15-37 (206)
396 1m7b_A RND3/RHOE small GTP-bin 96.8 0.00071 2.4E-08 53.1 3.1 23 3-25 8-30 (184)
397 3cmw_A Protein RECA, recombina 96.8 0.0028 9.6E-08 66.2 8.2 35 3-37 733-767 (1706)
398 2gf0_A GTP-binding protein DI- 96.8 0.00083 2.8E-08 52.9 3.5 22 3-24 9-30 (199)
399 2gf9_A RAS-related protein RAB 96.8 0.00086 2.9E-08 52.7 3.5 23 3-25 23-45 (189)
400 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00074 2.5E-08 59.9 3.4 24 4-27 26-49 (359)
401 3lxw_A GTPase IMAP family memb 96.8 0.00072 2.5E-08 56.5 3.2 23 3-25 22-44 (247)
402 1mh1_A RAC1; GTP-binding, GTPa 96.7 0.0009 3.1E-08 52.0 3.5 23 3-25 6-28 (186)
403 1njg_A DNA polymerase III subu 96.7 0.00081 2.8E-08 54.0 3.3 24 4-27 47-70 (250)
404 3tkl_A RAS-related protein RAB 96.7 0.0009 3.1E-08 52.6 3.5 23 3-25 17-39 (196)
405 3iby_A Ferrous iron transport 96.7 0.0007 2.4E-08 57.0 3.0 22 4-25 3-24 (256)
406 2xtp_A GTPase IMAP family memb 96.7 0.00086 2.9E-08 55.9 3.5 23 3-25 23-45 (260)
407 1zj6_A ADP-ribosylation factor 96.7 0.00092 3.1E-08 52.5 3.5 22 3-24 17-38 (187)
408 2fg5_A RAB-22B, RAS-related pr 96.7 0.00089 3.1E-08 52.9 3.4 23 3-25 24-46 (192)
409 1w5s_A Origin recognition comp 96.7 0.0031 1E-07 55.6 7.2 24 4-27 52-77 (412)
410 4edh_A DTMP kinase, thymidylat 96.7 0.00092 3.1E-08 54.9 3.5 34 2-35 6-39 (213)
411 3t5g_A GTP-binding protein RHE 96.7 0.0008 2.7E-08 52.3 2.9 22 3-24 7-28 (181)
412 3kjh_A CO dehydrogenase/acetyl 96.7 0.0021 7.3E-08 52.5 5.6 39 1-41 1-39 (254)
413 1zbd_A Rabphilin-3A; G protein 96.7 0.001 3.5E-08 52.8 3.5 23 3-25 9-31 (203)
414 3a1s_A Iron(II) transport prot 96.7 0.00098 3.4E-08 56.1 3.6 23 3-25 6-28 (258)
415 3t5d_A Septin-7; GTP-binding p 96.7 0.00075 2.6E-08 57.1 2.8 23 3-25 9-31 (274)
416 3cbq_A GTP-binding protein REM 96.7 0.00067 2.3E-08 54.2 2.4 23 3-25 24-46 (195)
417 1z06_A RAS-related protein RAB 96.7 0.0011 3.6E-08 52.2 3.5 23 3-25 21-43 (189)
418 3exa_A TRNA delta(2)-isopenten 96.7 0.0012 4.1E-08 57.6 4.1 25 2-26 3-27 (322)
419 3dz8_A RAS-related protein RAB 96.7 0.00099 3.4E-08 52.5 3.3 23 3-25 24-46 (191)
420 2r2a_A Uncharacterized protein 96.7 0.0014 4.9E-08 53.2 4.3 22 1-22 4-25 (199)
421 2h17_A ADP-ribosylation factor 96.7 0.00089 3E-08 52.3 3.0 23 3-25 22-44 (181)
422 2a5j_A RAS-related protein RAB 96.7 0.0011 3.7E-08 52.3 3.5 23 3-25 22-44 (191)
423 3bwd_D RAC-like GTP-binding pr 96.7 0.0011 3.7E-08 51.4 3.4 23 3-25 9-31 (182)
424 3cmu_A Protein RECA, recombina 96.7 0.0064 2.2E-07 64.4 10.1 117 3-137 384-517 (2050)
425 1x3s_A RAS-related protein RAB 96.7 0.0011 3.8E-08 51.9 3.5 23 3-25 16-38 (195)
426 2p5s_A RAS and EF-hand domain 96.7 0.0011 3.9E-08 52.6 3.6 23 3-25 29-51 (199)
427 2h57_A ADP-ribosylation factor 96.7 0.00074 2.5E-08 53.1 2.4 23 3-25 22-44 (190)
428 2p65_A Hypothetical protein PF 96.7 0.00076 2.6E-08 52.3 2.5 25 4-28 45-69 (187)
429 1zd9_A ADP-ribosylation factor 96.7 0.001 3.6E-08 52.3 3.3 23 3-25 23-45 (188)
430 3oes_A GTPase rhebl1; small GT 96.7 0.001 3.6E-08 52.9 3.3 23 3-25 25-47 (201)
431 2atv_A RERG, RAS-like estrogen 96.7 0.0012 4.1E-08 52.3 3.6 23 3-25 29-51 (196)
432 3cph_A RAS-related protein SEC 96.6 0.0012 4.1E-08 52.7 3.6 23 3-25 21-43 (213)
433 3te6_A Regulatory protein SIR3 96.6 0.0066 2.3E-07 52.9 8.5 25 3-27 46-70 (318)
434 2bcg_Y Protein YP2, GTP-bindin 96.6 0.0011 3.7E-08 52.9 3.3 23 3-25 9-31 (206)
435 2qu8_A Putative nucleolar GTP- 96.6 0.0011 3.7E-08 54.1 3.3 23 3-25 30-52 (228)
436 2il1_A RAB12; G-protein, GDP, 96.6 0.00084 2.9E-08 53.2 2.5 22 3-24 27-48 (192)
437 4hlc_A DTMP kinase, thymidylat 96.6 0.0013 4.5E-08 53.6 3.8 34 1-35 1-34 (205)
438 3iev_A GTP-binding protein ERA 96.6 0.0011 3.6E-08 57.3 3.4 23 3-25 11-33 (308)
439 2ew1_A RAS-related protein RAB 96.6 0.0011 3.9E-08 53.2 3.3 23 3-25 27-49 (201)
440 2iwr_A Centaurin gamma 1; ANK 96.6 0.00077 2.7E-08 52.2 2.3 23 3-25 8-30 (178)
441 1tue_A Replication protein E1; 96.6 0.00071 2.4E-08 55.6 2.1 24 3-26 59-82 (212)
442 1wf3_A GTP-binding protein; GT 96.6 0.001 3.4E-08 57.4 3.2 22 4-25 9-30 (301)
443 2dby_A GTP-binding protein; GD 96.6 0.00096 3.3E-08 59.4 3.1 23 3-25 2-24 (368)
444 3reg_A RHO-like small GTPase; 96.6 0.0013 4.3E-08 52.0 3.5 23 3-25 24-46 (194)
445 2cjw_A GTP-binding protein GEM 96.6 0.0013 4.3E-08 52.4 3.5 22 3-24 7-28 (192)
446 2o52_A RAS-related protein RAB 96.6 0.0011 3.9E-08 52.8 3.3 23 3-25 26-48 (200)
447 3zvl_A Bifunctional polynucleo 96.6 0.0011 3.7E-08 59.8 3.4 24 3-26 259-282 (416)
448 3gmt_A Adenylate kinase; ssgci 96.6 0.0011 3.8E-08 55.3 3.1 23 4-26 10-32 (230)
449 3a8t_A Adenylate isopentenyltr 96.6 0.0016 5.3E-08 57.4 4.2 25 3-27 41-65 (339)
450 2fh5_B SR-beta, signal recogni 96.6 0.0013 4.4E-08 52.8 3.3 24 3-26 8-31 (214)
451 1gwn_A RHO-related GTP-binding 96.6 0.0012 4.1E-08 53.2 3.1 23 3-25 29-51 (205)
452 2fv8_A H6, RHO-related GTP-bin 96.6 0.0012 4.2E-08 52.8 3.2 23 3-25 26-48 (207)
453 4bas_A ADP-ribosylation factor 96.5 0.0011 3.9E-08 52.1 2.8 23 3-25 18-40 (199)
454 3c5c_A RAS-like protein 12; GD 96.5 0.0015 5.1E-08 51.5 3.5 23 3-25 22-44 (187)
455 2q3h_A RAS homolog gene family 96.5 0.0015 5.1E-08 51.7 3.5 23 3-25 21-43 (201)
456 1jwy_B Dynamin A GTPase domain 96.5 0.0011 3.9E-08 56.7 3.0 24 3-26 25-48 (315)
457 2b6h_A ADP-ribosylation factor 96.5 0.0012 4.1E-08 52.4 2.9 22 3-24 30-51 (192)
458 3cmw_A Protein RECA, recombina 96.5 0.0055 1.9E-07 64.1 8.4 117 3-137 384-517 (1706)
459 2fu5_C RAS-related protein RAB 96.5 0.00091 3.1E-08 52.0 2.0 22 3-24 9-30 (183)
460 2f7s_A C25KG, RAS-related prot 96.5 0.0016 5.4E-08 52.3 3.5 24 3-26 26-49 (217)
461 3u61_B DNA polymerase accessor 96.5 0.015 5.1E-07 49.8 9.8 24 3-26 49-72 (324)
462 2j1l_A RHO-related GTP-binding 96.5 0.0015 5.3E-08 52.6 3.3 22 3-24 35-56 (214)
463 2dy1_A Elongation factor G; tr 96.5 0.0011 3.8E-08 63.4 2.8 31 3-33 10-42 (665)
464 2gco_A H9, RHO-related GTP-bin 96.5 0.0015 5.1E-08 52.1 3.1 23 3-25 26-48 (201)
465 3llu_A RAS-related GTP-binding 96.5 0.0018 6.2E-08 51.3 3.5 24 3-26 21-44 (196)
466 2atx_A Small GTP binding prote 96.4 0.0017 5.9E-08 51.1 3.4 23 3-25 19-41 (194)
467 4dzz_A Plasmid partitioning pr 96.4 0.0063 2.1E-07 48.3 6.7 40 1-41 1-41 (206)
468 2chg_A Replication factor C sm 96.4 0.0016 5.5E-08 51.7 3.1 22 5-26 41-62 (226)
469 3cnl_A YLQF, putative uncharac 96.4 0.0019 6.4E-08 54.7 3.5 24 4-27 101-124 (262)
470 4tmk_A Protein (thymidylate ki 96.4 0.0014 4.7E-08 53.9 2.6 29 2-30 3-31 (213)
471 4gzl_A RAS-related C3 botulinu 96.4 0.0019 6.6E-08 51.7 3.4 22 3-24 31-52 (204)
472 1g3q_A MIND ATPase, cell divis 96.4 0.0087 3E-07 48.7 7.4 42 1-42 1-43 (237)
473 2ocp_A DGK, deoxyguanosine kin 96.4 0.0017 5.8E-08 53.6 3.1 25 3-27 3-27 (241)
474 2qmh_A HPR kinase/phosphorylas 96.4 0.0019 6.3E-08 52.8 3.2 23 3-25 35-57 (205)
475 4djt_A GTP-binding nuclear pro 96.4 0.00079 2.7E-08 54.2 0.9 23 3-25 12-34 (218)
476 2aka_B Dynamin-1; fusion prote 96.4 0.0016 5.3E-08 55.2 2.8 23 4-26 28-50 (299)
477 2hup_A RAS-related protein RAB 96.4 0.0021 7.1E-08 51.3 3.4 23 3-25 30-52 (201)
478 3lv8_A DTMP kinase, thymidylat 96.4 0.0015 5E-08 54.6 2.5 28 3-30 28-55 (236)
479 3t15_A Ribulose bisphosphate c 96.4 0.0018 6.3E-08 55.4 3.2 24 3-26 37-60 (293)
480 1h65_A Chloroplast outer envel 96.3 0.002 6.8E-08 54.2 3.3 23 3-25 40-62 (270)
481 2r62_A Cell division protease 96.3 0.00087 3E-08 56.0 1.0 23 4-26 46-68 (268)
482 2axn_A 6-phosphofructo-2-kinas 96.3 0.0016 5.6E-08 60.4 2.9 26 2-27 35-60 (520)
483 3e2i_A Thymidine kinase; Zn-bi 96.3 0.0036 1.2E-07 51.7 4.6 124 2-155 28-152 (219)
484 1p5z_B DCK, deoxycytidine kina 96.3 0.0013 4.4E-08 55.2 1.9 25 3-27 25-49 (263)
485 2x77_A ADP-ribosylation factor 96.3 0.0013 4.5E-08 51.5 1.9 22 3-24 23-44 (189)
486 3cpj_B GTP-binding protein YPT 96.3 0.0025 8.5E-08 51.7 3.5 23 3-25 14-36 (223)
487 3llm_A ATP-dependent RNA helic 96.3 0.0023 8E-08 52.6 3.4 21 3-23 77-97 (235)
488 1q57_A DNA primase/helicase; d 96.3 0.15 5.1E-06 46.6 15.8 36 3-38 243-279 (503)
489 4i1u_A Dephospho-COA kinase; s 96.3 0.0026 8.9E-08 52.2 3.5 23 3-25 10-32 (210)
490 2g3y_A GTP-binding protein GEM 96.3 0.0026 8.9E-08 51.8 3.5 23 3-25 38-60 (211)
491 2j0v_A RAC-like GTP-binding pr 96.2 0.0022 7.5E-08 51.3 2.9 23 3-25 10-32 (212)
492 2yc2_C IFT27, small RAB-relate 96.2 0.001 3.5E-08 52.7 0.9 23 3-25 21-43 (208)
493 3q3j_B RHO-related GTP-binding 96.2 0.0028 9.7E-08 51.2 3.6 24 2-25 27-50 (214)
494 3tqf_A HPR(Ser) kinase; transf 96.2 0.0027 9.3E-08 50.7 3.4 23 2-24 16-38 (181)
495 3v9p_A DTMP kinase, thymidylat 96.2 0.0011 3.7E-08 55.1 1.0 27 3-29 26-52 (227)
496 3uk6_A RUVB-like 2; hexameric 96.2 0.0028 9.5E-08 55.3 3.7 34 3-36 71-104 (368)
497 1d2n_A N-ethylmaleimide-sensit 96.2 0.0026 9E-08 53.3 3.3 23 3-25 65-87 (272)
498 1bif_A 6-phosphofructo-2-kinas 96.2 0.0029 9.8E-08 57.8 3.8 25 2-26 39-63 (469)
499 3pxi_A Negative regulator of g 96.2 0.011 3.8E-07 57.0 8.0 33 4-36 523-555 (758)
500 2orw_A Thymidine kinase; TMTK, 96.2 0.0023 7.9E-08 51.1 2.7 32 3-35 4-36 (184)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=8.3e-31 Score=227.02 Aligned_cols=157 Identities=13% Similarity=0.117 Sum_probs=122.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC---------CCCCC-CC-------cCCHHHhhh-------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~-------~~~i~~~i~------- 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~ 114 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK 114 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999987621 22333 22 346777653
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026569 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
++++++.+++....... ...+++|++ ++||++++. +|++|||||||+ ||+.++..++ ++++++
T Consensus 115 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~iAraL~~--~P~lLlLDEPts~LD~~~~~~i~-~~l~~l 189 (275)
T 3gfo_A 115 LPEDEIRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVM--EPKVLILDEPTAGLDPMGVSEIM-KLLVEM 189 (275)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 66788999997543322 245677654 999999999 999999999999 9999999999 999999
Q ss_pred H-hCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026569 127 K-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 127 ~-~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
+ ++|.+|+++. |.+.....+|+++++...+.+....++
T Consensus 190 ~~~~g~tvi~vt----Hdl~~~~~~~drv~~l~~G~i~~~g~~ 228 (275)
T 3gfo_A 190 QKELGITIIIAT----HDIDIVPLYCDNVFVMKEGRVILQGNP 228 (275)
T ss_dssp HHHHCCEEEEEE----SCCSSGGGGCSEEEEEETTEEEEEECH
T ss_pred HhhCCCEEEEEe----cCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 7 5689998875 888888888876666555555444443
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=1.3e-29 Score=227.01 Aligned_cols=163 Identities=12% Similarity=0.152 Sum_probs=133.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC----------CCCCC-------CCcCCHHHhhh-------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~------- 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999987642 22333 34567888764
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026569 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+||.+..... ...+++|++ ++|||||+. +|++||+||||+ ||+.++..++ ++++++
T Consensus 135 ~~~~~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqkQRVaIArAL~~--~P~lLLlDEPTs~LD~~~~~~i~-~lL~~l 209 (366)
T 3tui_C 135 TPKDEVKRRVTELLSLVGLGDKHDSY--PSNLSGGQKQRVAIARALAS--NPKVLLCDQATSALDPATTRSIL-ELLKDI 209 (366)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCC--TTTSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHHH
Confidence 66789999997643322 235667654 999999999 999999999999 9999999999 999999
Q ss_pred Hh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccc
Q 026569 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (236)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk 174 (236)
++ .|.||++|. |.+.....+|++++++..|.+....+.-.+++.
T Consensus 210 ~~~~g~Tii~vT----Hdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 210 NRRLGLTILLIT----HEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp HHHSCCEEEEEE----SCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HHhCCCEEEEEe----cCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 75 599998885 999989999998888878877777766666654
No 3
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.96 E-value=2.8e-29 Score=213.42 Aligned_cols=149 Identities=16% Similarity=0.221 Sum_probs=116.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC-----CCCCCC-C------CcCCHHHhhh-------------
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-P------VAMDIRELIS------------- 58 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~-----~~~~~~-~------~~~~i~~~i~------------- 58 (236)
+++|+||||||||||+|+|+|+++|++|+|.++|.++. ...++| + +..++++++.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~ 105 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDR 105 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHH
Confidence 68999999999999999999999999999999997653 123444 2 2457777653
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcE
Q 026569 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (236)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i 133 (236)
++++++.+|+.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ ++++++++ .|.++
T Consensus 106 ~~~~~l~~~~l~~~~~~~--~~~LSgGqkqRv~lAral~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tv 180 (240)
T 2onk_A 106 RVREMAEKLGIAHLLDRK--PARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLM-EELRFVQREFDVPI 180 (240)
T ss_dssp HHHHHHHTTTCTTTTTCC--GGGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHH-HHHHHHHHHHTCCE
T ss_pred HHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 45788889997653332 245777654 999999999 999999999999 9999999999 99999865 48899
Q ss_pred EEEEecccccccchhhHhhhhHHHHHHH
Q 026569 134 CAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
+++. |.+.+...+++.+++...+.
T Consensus 181 i~vt----Hd~~~~~~~~d~i~~l~~G~ 204 (240)
T 2onk_A 181 LHVT----HDLIEAAMLADEVAVMLNGR 204 (240)
T ss_dssp EEEE----SCHHHHHHHCSEEEEEETTE
T ss_pred EEEe----CCHHHHHHhCCEEEEEECCE
Confidence 8775 88877777776544444333
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.95 E-value=6.2e-29 Score=210.56 Aligned_cols=145 Identities=17% Similarity=0.175 Sum_probs=110.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-----------CCCCC-------CCcCCHHHhhh------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~ 111 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK 111 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999976531 12333 33457777653
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026569 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+.++++.+++.+.....+ ...+++|++ ++||++++. +|++||+||||+ ||+.++..++ ++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LSgGq~QRv~iAral~~--~p~llllDEPts~LD~~~~~~i~-~~ 187 (235)
T 3tif_A 112 YRGAMSGEERRKRALECLKMAELEERFANHK-PNQLSGGQQQRVAIARALAN--NPPIILADQPTWALDSKTGEKIM-QL 187 (235)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HH
T ss_pred hccCCCHHHHHHHHHHHHHHCCCChhhhhCC-hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 456788888865321111 245667654 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhC-CCcEEEEEecccccccchhhHhhhhHH
Q 026569 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++++++ |.+++++. |++. ...+++.+++
T Consensus 188 l~~l~~~~g~tvi~vt----Hd~~-~~~~~d~i~~ 217 (235)
T 3tif_A 188 LKKLNEEDGKTVVVVT----HDIN-VARFGERIIY 217 (235)
T ss_dssp HHHHHHHHCCEEEEEC----SCHH-HHTTSSEEEE
T ss_pred HHHHHHHcCCEEEEEc----CCHH-HHHhCCEEEE
Confidence 9999764 89998774 7765 3456654333
No 5
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.95 E-value=9.7e-29 Score=207.91 Aligned_cols=143 Identities=17% Similarity=0.134 Sum_probs=111.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-----------CCCCC-------CCcCCHHHhhh------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 110 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM 110 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence 4789999999999999999999999999999999977531 12333 23457777653
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026569 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~ 185 (224)
T 2pcj_A 111 GKPKKEAKERGEYLLSELGLGDKLSRK--PYELSGGEQQRVAIARALAN--EPILLFADEPTGNLDSANTKRVM-DIFLK 185 (224)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTCTTCC--GGGSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 45678889997654332 245767654 999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCcEEEEEecccccccchhhHhhhhH
Q 026569 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
++++|.+++++. |..... .+++.++
T Consensus 186 l~~~g~tvi~vt----Hd~~~~-~~~d~v~ 210 (224)
T 2pcj_A 186 INEGGTSIVMVT----HERELA-ELTHRTL 210 (224)
T ss_dssp HHHTTCEEEEEC----SCHHHH-TTSSEEE
T ss_pred HHHCCCEEEEEc----CCHHHH-HhCCEEE
Confidence 976788887774 765543 5554333
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=8.1e-29 Score=213.25 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=113.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC--C-------CCCCC-------CCcCCHHHhhh--------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDY-------PVAMDIRELIS-------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~-------~~~~~-------~~~~~i~~~i~-------- 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. . ..++| ++..++++++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~ 130 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK 130 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999997753 0 11233 33457776653
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026569 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
++++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ ++++++
T Consensus 131 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~lAraL~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l 205 (263)
T 2olj_A 131 WPREKAEAKAMELLDKVGLKDKAHAY--PDSLSGGQAQRVAIARALAM--EPKIMLFDEPTSALDPEMVGEVL-SVMKQL 205 (263)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 45678888887543222 245666654 999999999 999999999999 9999999999 999999
Q ss_pred HhCCCcEEEEEecccccccchhhHhhhhHH
Q 026569 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++|.+|+++ +|.+.....+++.+++
T Consensus 206 ~~~g~tvi~v----tHd~~~~~~~~d~v~~ 231 (263)
T 2olj_A 206 ANEGMTMVVV----THEMGFAREVGDRVLF 231 (263)
T ss_dssp HHTTCEEEEE----CSCHHHHHHHCSEEEE
T ss_pred HhCCCEEEEE----cCCHHHHHHhCCEEEE
Confidence 7778888777 4888777777764433
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.95 E-value=6.1e-29 Score=213.85 Aligned_cols=146 Identities=18% Similarity=0.187 Sum_probs=113.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC--------------------CCCCC-------CCcCCHHH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENFDY-------PVAMDIRE 55 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------------------~~~~~-------~~~~~i~~ 55 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| ++..++++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e 112 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 112 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHH
Confidence 4789999999999999999999999999999999976530 11223 33457776
Q ss_pred hhh-----------------HHHHHHHhCCCCC-CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHh
Q 026569 56 LIS-----------------LEDVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (236)
Q Consensus 56 ~i~-----------------~~~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~ 114 (236)
++. ++++++.+|+.+. .... ...+++|++ ++||++++. +|+++||||||+ ||+.+
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~ 188 (262)
T 1b0u_A 113 NVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY--PVHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALDPEL 188 (262)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSCHHH
T ss_pred HHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHH
Confidence 653 3467888888653 2222 245667654 999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026569 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 115 ~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
+..++ +++++++++|.+++++ +|.+.....+++.+++.
T Consensus 189 ~~~~~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d~v~~l 226 (262)
T 1b0u_A 189 VGEVL-RIMQQLAEEGKTMVVV----THEMGFARHVSSHVIFL 226 (262)
T ss_dssp HHHHH-HHHHHHHHTTCCEEEE----CSCHHHHHHHCSEEEEE
T ss_pred HHHHH-HHHHHHHhCCCEEEEE----eCCHHHHHHhCCEEEEE
Confidence 99999 9999997778898877 48888777777644443
No 8
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.95 E-value=7.6e-29 Score=221.63 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=122.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC---------CCCCCC-------CCcCCHHHhhh--------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-------PVAMDIRELIS-------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~---------~~~~~~-------~~~~~i~~~i~-------- 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. ...++| ++.+++++++.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~ 110 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG 110 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999997651 122333 44668888774
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026569 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
++++++.++|.+..... ...+++|++ ++|||||+. +|++|||||||+ ||+..+..++ +.++++.
T Consensus 111 ~~~~~~~~v~~~l~~~gL~~~~~r~--~~~LSGGq~QRValArAL~~--~P~lLLLDEPts~LD~~~r~~l~-~~l~~~~ 185 (359)
T 3fvq_A 111 RTAQERQRIEAMLELTGISELAGRY--PHELSGGQQQRAALARALAP--DPELILLDEPFSALDEQLRRQIR-EDMIAAL 185 (359)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 67889999998654333 245777654 999999999 999999999999 9999999998 6666654
Q ss_pred -hCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026569 128 -SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 128 -~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
+.|.|+++|+ |++.+...++++++++..+.+....++
T Consensus 186 ~~~g~tvi~vT----Hd~~ea~~~aDri~vl~~G~i~~~g~~ 223 (359)
T 3fvq_A 186 RANGKSAVFVS----HDREEALQYADRIAVMKQGRILQTASP 223 (359)
T ss_dssp HHTTCEEEEEC----CCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HhCCCEEEEEe----CCHHHHHHHCCEEEEEECCEEEEEeCH
Confidence 5799998884 999888888876666555555444333
No 9
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.95 E-value=6.6e-29 Score=223.52 Aligned_cols=156 Identities=14% Similarity=0.084 Sum_probs=124.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC------------CCCCCCCcCCHHHhhh------------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------------~~~~~~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ++..+++.+++++++.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~ 109 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV 109 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999987532 2223345678888874
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026569 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
++++++.+++.+..... ...++++++ ++|||+|+. +|++|||||||+ ||+..+..+. ++++++++ .|
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~--p~~LSGGqrQRVaiArAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~l~~~~g 184 (381)
T 3rlf_A 110 INQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG 184 (381)
T ss_dssp HHHHHHHHHHHTTCGGGTTCC--GGGSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhHCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHhCC
Confidence 66789999997654332 245777654 999999999 999999999999 9999999999 99999875 49
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026569 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
.++++|+ |++.+...++++++++..|.+....+
T Consensus 185 ~tii~vT----Hd~~ea~~~aDri~vl~~G~i~~~g~ 217 (381)
T 3rlf_A 185 RTMIYVT----HDQVEAMTLADKIVVLDAGRVAQVGK 217 (381)
T ss_dssp CEEEEEC----SCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred CEEEEEE----CCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 9998884 99988888887666555555443333
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=1.2e-28 Score=211.33 Aligned_cols=145 Identities=14% Similarity=0.164 Sum_probs=113.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 121 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS 121 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChH
Confidence 4789999999999999999999999999999999977532 12333 33457777653
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026569 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
++++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++|
T Consensus 122 ~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g 196 (256)
T 1vpl_A 122 EIEEMVERATEIAGLGEKIKDR--VSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVR-KILKQASQEG 196 (256)
T ss_dssp HHHHHHHHHHHHHCCGGGGGSB--GGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccccCHHHHHHHH-HHHHHHHhCC
Confidence 45678888987543222 245666654 999999999 999999999999 9999999999 9999997778
Q ss_pred CcEEEEEecccccccchhhHhhhhHH
Q 026569 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
.+|+++. |.+.....+++.+++
T Consensus 197 ~tiiivt----Hd~~~~~~~~d~v~~ 218 (256)
T 1vpl_A 197 LTILVSS----HNMLEVEFLCDRIAL 218 (256)
T ss_dssp CEEEEEE----CCHHHHTTTCSEEEE
T ss_pred CEEEEEc----CCHHHHHHHCCEEEE
Confidence 8888775 877766666654433
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.95 E-value=2.3e-28 Score=210.72 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=119.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC--------------CCCCCCCcCCHHHhhh----------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~~~~~~~i~~~i~---------- 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +...+....++++++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ 117 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTT
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHH
Confidence 5789999999999999999999999999999999987642 1112223457777653
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcC----CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026569 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNY----LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~----~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
++++++.+++....... ...+++|++ ++||++++.. .+|++|||||||+ ||+.++..++ +++++++
T Consensus 118 ~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~-~~l~~l~ 194 (266)
T 4g1u_C 118 DRQALQQVMAQTDCLALAQRD--YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL-RLLRQLT 194 (266)
T ss_dssp HHHHHHHHHHHTTCSTTTTSB--GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH-HHHHHHH
Confidence 67889999997654333 245777654 9999999851 1799999999999 9999999999 9999997
Q ss_pred hC-CCcEEEEEecccccccchhhHhhhhHHHHHHHHhh
Q 026569 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (236)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~ 164 (236)
++ +++++++ +|++.....+|+++++...|.+..
T Consensus 195 ~~~~~tvi~v----tHdl~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 195 RQEPLAVCCV----LHDLNLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHSSEEEEEE----CSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HcCCCEEEEE----EcCHHHHHHhCCEEEEEECCEEEE
Confidence 64 5688777 498888888887555554444433
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=2.3e-28 Score=218.73 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=119.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-----CCCC-------CCCcCCHHHhhh------------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~-------~~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++ +++.+++++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDE 109 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 4789999999999999999999999999999999977531 2232 244667888763
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026569 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
++++++.+++.+..... ...+++|++ ++||++++. +|++|||||||+ ||+..+..+. +.++++++ .|
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~--~~~LSgGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 184 (359)
T 2yyz_A 110 VEKRVVEIARKLLIDNLLDRK--PTQLSGGQQQRVALARALVK--QPKVLLFDEPLSNLDANLRMIMR-AEIKHLQQELG 184 (359)
T ss_dssp TTHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 56789999997653332 245777654 999999999 999999999999 9999999999 88999865 48
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHH
Q 026569 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
.++++|+ |...+...+++.++++..+.+
T Consensus 185 ~tvi~vT----Hd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 185 ITSVYVT----HDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp CEEEEEE----SCHHHHHHHCSEEEEEETTEE
T ss_pred CEEEEEc----CCHHHHHHhCCEEEEEECCEE
Confidence 8998885 888877787775555544444
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=2.7e-28 Score=218.52 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=122.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-----CCCCC-------CCcCCHHHhhh------------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| ++.+++++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREE 109 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 4789999999999999999999999999999999977531 22322 44668888764
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026569 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
++++++.+++.+..... ...+++|++ ++||++++. +|++|||||||+ ||+..+..+. +.++++++ .|
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 184 (362)
T 2it1_A 110 IDKKVREVAKMLHIDKLLNRY--PWQLSGGQQQRVAIARALVK--EPEVLLLDEPLSNLDALLRLEVR-AELKRLQKELG 184 (362)
T ss_dssp HHHHHHHHHHHTTCTTCTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESGGGGSCHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCchHhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhCC
Confidence 56788999998754333 245777654 999999999 999999999999 9999999999 88999865 48
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhh
Q 026569 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~ 164 (236)
.++++|+ |+..+...+++.++++..+.+..
T Consensus 185 ~tvi~vT----Hd~~~a~~~adri~vl~~G~i~~ 214 (362)
T 2it1_A 185 ITTVYVT----HDQAEALAMADRIAVIREGEILQ 214 (362)
T ss_dssp CEEEEEE----SCHHHHHHHCSEEEEEETTEEEE
T ss_pred CEEEEEC----CCHHHHHHhCCEEEEEECCEEEE
Confidence 8998885 88888888887666665555543
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=1.3e-28 Score=209.15 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=110.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC--------CCCCC-C------CcCCHHHhhh---------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 112 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK 112 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCH
Confidence 4789999999999999999999999999999999977632 12334 2 2446666653
Q ss_pred ------HHHHHHHhC-CCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026569 59 ------LEDVMEELG-LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 ------~~~~l~~~~-l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++++.++ +....... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ ++++++++
T Consensus 113 ~~~~~~~~~~l~~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~ 187 (240)
T 1ji0_A 113 EGIKRDLEWIFSLFPRLKERLKQL--GGTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVF-EVIQKINQ 187 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTTSB--SSSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHhhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence 345666663 65432222 234666654 999999999 999999999999 9999999999 99999976
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHH
Q 026569 129 RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+|.+++++. |...+...+++.+++
T Consensus 188 ~g~tvi~vt----Hd~~~~~~~~d~v~~ 211 (240)
T 1ji0_A 188 EGTTILLVE----QNALGALKVAHYGYV 211 (240)
T ss_dssp TTCCEEEEE----SCHHHHHHHCSEEEE
T ss_pred CCCEEEEEe----cCHHHHHHhCCEEEE
Confidence 788998775 887777777754433
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=2e-28 Score=218.81 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=120.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC-----CCCCCC-------CCcCCHHHhhh------------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~-----~~~~~~-------~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. ...++| ++.+++++++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~ 121 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE 121 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 478999999999999999999999999999999997753 122333 44568888764
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026569 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
++++++.+++.+..... ...+++|++ ++||++|+. +|++|||||||+ ||+.++..++ ++++++++ .|
T Consensus 122 ~~~~v~~~l~~~gL~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 196 (355)
T 1z47_A 122 MDARVRELLRFMRLESYANRF--PHELSGGQQQRVALARALAP--RPQVLLFDEPFAAIDTQIRRELR-TFVRQVHDEMG 196 (355)
T ss_dssp HHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTCCSSHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 56788899997654332 245777654 999999999 999999999999 9999999999 88999875 48
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026569 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
.++++|+ |...+...+++.++++..+.+.
T Consensus 197 ~tvi~vT----Hd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 197 VTSVFVT----HDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp CEEEEEC----SCHHHHHHHCSEEEEEETTEEE
T ss_pred CEEEEEC----CCHHHHHHhCCEEEEEECCEEE
Confidence 8988774 8888888888755555444443
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=3.6e-28 Score=216.71 Aligned_cols=151 Identities=13% Similarity=0.138 Sum_probs=120.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-----CCCC-------CCCcCCHHHhhh------------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~-------~~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++ +++.+++++++.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999977531 1232 345678888764
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcE
Q 026569 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (236)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i 133 (236)
++++++.+++.+..... ...+++|++ ++||++|+. +|++|||||||+ ||+..+..+. ++++++++ .|.++
T Consensus 107 ~v~~~l~~~~L~~~~~~~--~~~LSgGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~ti 181 (348)
T 3d31_A 107 RVLDTARDLKIEHLLDRN--PLTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAR-EMLSVLHKKNKLTV 181 (348)
T ss_dssp HHHHHHHHTTCTTTTTSC--GGGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHH-HHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 45788899998654333 245777654 999999999 999999999999 9999999999 88999865 58899
Q ss_pred EEEEecccccccchhhHhhhhHHHHHHHH
Q 026569 134 CAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
++|+ |...+...+++.++++..+.+
T Consensus 182 i~vT----Hd~~~~~~~adri~vl~~G~i 206 (348)
T 3d31_A 182 LHIT----HDQTEARIMADRIAVVMDGKL 206 (348)
T ss_dssp EEEE----SCHHHHHHHCSEEEEESSSCE
T ss_pred EEEe----CCHHHHHHhCCEEEEEECCEE
Confidence 8885 888877787765555444443
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=5e-28 Score=207.52 Aligned_cols=146 Identities=19% Similarity=0.154 Sum_probs=111.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC--------CCCCC-CC------cCCHHHhh----------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELI---------- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i---------- 57 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| +| ..++++++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 113 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES 113 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccC
Confidence 4789999999999999999999999999999999977532 12333 22 23443332
Q ss_pred -------------------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhH
Q 026569 58 -------------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (236)
Q Consensus 58 -------------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~ 115 (236)
.++++++.+|+.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~ 189 (257)
T 1g6h_A 114 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK--AGELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVAPGLA 189 (257)
T ss_dssp HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHH
T ss_pred cccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHH
Confidence 145677788886543222 245666654 999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026569 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
..++ +++++++++|.+|+++ +|.+.....+++.+++.
T Consensus 190 ~~l~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 190 HDIF-NHVLELKAKGITFLII----EHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp HHHH-HHHHHHHHTTCEEEEE----CSCCSTTGGGCSEEEEE
T ss_pred HHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCCEEEEE
Confidence 9999 9999997778888777 48888777777644433
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.94 E-value=3.5e-28 Score=218.52 Aligned_cols=153 Identities=15% Similarity=0.081 Sum_probs=119.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-----CCCCC-------CCcCCHHHhhh------------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| ++.+++++++.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 117 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE 117 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 4789999999999999999999999999999999977531 22333 34567877763
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026569 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
++++++.+++.+..... ...++++++ ++||++|+. +|++||||||++ ||+..+..+. +.++++++ .|
T Consensus 118 ~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 192 (372)
T 1v43_A 118 IDKRVRWAAELLQIEELLNRY--PAQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLK 192 (372)
T ss_dssp HHHHHHHHHHHTTCGGGTTSC--TTTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCC
Confidence 56788999997643332 235666643 999999999 999999999999 9999999999 88999875 48
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhh
Q 026569 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~ 164 (236)
.++++|+ |...+...+++.++++..+.+..
T Consensus 193 ~tvi~vT----Hd~~~a~~~adri~vl~~G~i~~ 222 (372)
T 1v43_A 193 VTTIYVT----HDQVEAMTMGDRIAVMNRGQLLQ 222 (372)
T ss_dssp CEEEEEE----SCHHHHHHHCSEEEEEETTEEEE
T ss_pred CEEEEEe----CCHHHHHHhCCEEEEEECCEEEE
Confidence 8998885 88888888887666655555443
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.94 E-value=5.3e-28 Score=217.49 Aligned_cols=156 Identities=16% Similarity=0.105 Sum_probs=122.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC-----------CCCCCC-------CCcCCHHHhhh------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~-----------~~~~~~-------~~~~~i~~~i~------ 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. ...++| ++.+++++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 109 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999999999999999986542 122333 44668888764
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026569 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
++++++.++|.+..... ...+++|++ ++||++|+. +|++|||||||+ ||+..+..+. +++++
T Consensus 110 ~~~~~~~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~ 184 (372)
T 1g29_1 110 KVPRQEIDQRVREVAELLGLTELLNRK--PRELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMR-AELKK 184 (372)
T ss_dssp TCCHHHHHHHHHHHHHHHTCGGGTTCC--GGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCchHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHH
Confidence 56788899997654332 245777654 999999999 999999999999 9999999999 88999
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026569 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
+++ .|.++++|+ |...+...+++.++++..+.+....+
T Consensus 185 l~~~~g~tvi~vT----Hd~~~a~~~adri~vl~~G~i~~~g~ 223 (372)
T 1g29_1 185 LQRQLGVTTIYVT----HDQVEAMTMGDRIAVMNRGVLQQVGS 223 (372)
T ss_dssp HHHHHTCEEEEEE----SCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHhcCCEEEEEC----CCHHHHHHhCCEEEEEeCCEEEEeCC
Confidence 875 488998885 88888888887666665555543333
No 20
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.94 E-value=3.6e-28 Score=217.25 Aligned_cols=151 Identities=16% Similarity=0.121 Sum_probs=118.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC----------CCCCCC-------CCcCCHHHhhh-------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-------PVAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~----------~~~~~~-------~~~~~i~~~i~------- 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. ...++| ++.+++++++.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 111 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999986542 122322 44567887763
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026569 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
++++++.+++.+..... ...+++|++ ++||++|+. +|++|||||||+ ||+..+..+. ++++++
T Consensus 112 ~~~~~~~~~v~~~l~~~~L~~~~~~~--~~~LSGGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l 186 (353)
T 1oxx_K 112 MSKEEIRKRVEEVAKILDIHHVLNHF--PRELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSAR-ALVKEV 186 (353)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHH
Confidence 56788999997653332 245777654 999999999 999999999999 9999999999 889998
Q ss_pred Hh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHH
Q 026569 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
++ .|.++++|+ |...+...+++.++++..+.+
T Consensus 187 ~~~~g~tvi~vT----Hd~~~~~~~adri~vl~~G~i 219 (353)
T 1oxx_K 187 QSRLGVTLLVVS----HDPADIFAIADRVGVLVKGKL 219 (353)
T ss_dssp HHHHCCEEEEEE----SCHHHHHHHCSEEEEEETTEE
T ss_pred HHhcCCEEEEEe----CCHHHHHHhCCEEEEEECCEE
Confidence 65 488998885 888878787765555444443
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.94 E-value=4.5e-28 Score=208.81 Aligned_cols=150 Identities=19% Similarity=0.168 Sum_probs=115.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC----CCCCCC-C-------CcCCHHHhhh------------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY-P-------VAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~----~~~~~~-~-------~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. ...++| + ...++++++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~ 113 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP 113 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHH
Confidence 478999999999999999999999999999999997652 122333 2 2346666542
Q ss_pred ---HHHHHHHhCCC--CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026569 59 ---LEDVMEELGLG--PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 ---~~~~l~~~~l~--~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
++++++.+|+. +..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++|
T Consensus 114 ~~~~~~~l~~~gl~~~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g 188 (266)
T 2yz2_A 114 VPLVKKAMEFVGLDFDSFKDRV--PFFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDREGKTDLL-RIVEKWKTLG 188 (266)
T ss_dssp HHHHHHHHHHTTCCHHHHTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHcCcCCcccccCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHcC
Confidence 45788889987 432222 245666654 999999999 999999999999 9999999999 9999997668
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026569 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
.+++++ +|.+.....+++.+++...+.
T Consensus 189 ~tii~v----tHd~~~~~~~~d~v~~l~~G~ 215 (266)
T 2yz2_A 189 KTVILI----SHDIETVINHVDRVVVLEKGK 215 (266)
T ss_dssp CEEEEE----CSCCTTTGGGCSEEEEEETTE
T ss_pred CEEEEE----eCCHHHHHHhCCEEEEEECCE
Confidence 888777 488877777776555444443
No 22
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=3.1e-27 Score=197.59 Aligned_cols=143 Identities=14% Similarity=0.102 Sum_probs=111.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC--CCCCCC-------CCcCCHHHhhh--------------H
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-------PVAMDIRELIS--------------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~-------~~~~~i~~~i~--------------~ 59 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...++| ++..++++++. +
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 115 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI 115 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence 468999999999999999999999999999999997641 112222 33456766653 4
Q ss_pred HHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026569 60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 60 ~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
+++++.+++... ... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++|.+++++
T Consensus 116 ~~~l~~~gl~~~-~~~--~~~LSgGqkqrv~laraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~g~tiiiv 189 (214)
T 1sgw_A 116 MDALESVEVLDL-KKK--LGELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIIS 189 (214)
T ss_dssp HHHHHHTTCCCT-TSB--GGGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHHHHHSEEEEE
T ss_pred HHHHHHcCCCcC-CCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 567888998765 322 245666654 999999999 999999999999 9999999999 9999987668888777
Q ss_pred EecccccccchhhHhhhhH
Q 026569 137 YLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 137 ~l~d~~~~~d~~~~~~~~l 155 (236)
. |.......+++.++
T Consensus 190 t----Hd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 190 S----REELSYCDVNENLH 204 (214)
T ss_dssp E----SSCCTTSSEEEEGG
T ss_pred e----CCHHHHHHhCCEEE
Confidence 4 77776666665544
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.94 E-value=3.1e-28 Score=211.28 Aligned_cols=145 Identities=16% Similarity=0.275 Sum_probs=111.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC--C-------CCCCC-CC--------cCCHHHhhh------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDY-PV--------AMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~-------~~~~~-~~--------~~~i~~~i~------ 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. . ..++| +| ..++++++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~ 127 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS 127 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhc
Confidence 478999999999999999999999999999999998764 1 22333 21 236666542
Q ss_pred --------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026569 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 59 --------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
++++++.+|+.+..... ...+++|++ ++||++++. +|++|||||||+ ||+.++..++ +
T Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGqkqRv~lAraL~~--~p~lLlLDEPts~LD~~~~~~l~-~ 202 (279)
T 2ihy_A 128 IGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY--IGYLSTGEKQRVMIARALMG--QPQVLILDEPAAGLDFIARESLL-S 202 (279)
T ss_dssp ------CCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHHHHHH-H
T ss_pred cccccCCcHHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-H
Confidence 45678888886543222 245666654 999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCcE--EEEEecccccccchhhHhhhhHH
Q 026569 122 FVDHLKSRNFNV--CAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 122 ll~~l~~~~~~i--i~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++++|.++ +++. |.+.+...+++.+++
T Consensus 203 ~l~~l~~~g~tv~~iivt----Hd~~~~~~~~d~v~~ 235 (279)
T 2ihy_A 203 ILDSLSDSYPTLAMIYVT----HFIEEITANFSKILL 235 (279)
T ss_dssp HHHHHHHHCTTCEEEEEE----SCGGGCCTTCCEEEE
T ss_pred HHHHHHHCCCEEEEEEEe----cCHHHHHHhCCEEEE
Confidence 999987668888 7775 777766676654433
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.94 E-value=1.3e-27 Score=204.09 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=112.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-------CCcCCHHHhhh----------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-------~~~~~i~~~i~---------- 58 (236)
-+++|+||||||||||+|+|+|+++|+ |+|.++|.++.. ..++| ++..++++++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 105 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE 105 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHH
Confidence 478999999999999999999999999 999999976521 11222 33456777653
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCC-------EEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026569 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDD-------YLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~-------~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
++++++.+++.+..... ...+++|++ ++||++++. +|+ ++||||||+ ||+.++..++ +++++++
T Consensus 106 ~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~~~~~~~~lllLDEPts~LD~~~~~~l~-~~l~~l~ 180 (249)
T 2qi9_C 106 LLNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQ--ITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALS 180 (249)
T ss_dssp HHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHH--HCTTTCTTCCEEEESSTTTTCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCcCCCCCeEEEEECCcccCCHHHHHHHH-HHHHHHH
Confidence 56788899987543322 345777654 999999999 999 999999999 9999999999 9999997
Q ss_pred hCCCcEEEEEecccccccchhhHhhhhHH
Q 026569 128 SRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++|.+++++ +|.......+++.+++
T Consensus 181 ~~g~tviiv----tHd~~~~~~~~d~v~~ 205 (249)
T 2qi9_C 181 QQGLAIVMS----SHDLNHTLRHAHRAWL 205 (249)
T ss_dssp HTTCEEEEE----CSCHHHHHHHCSEEEE
T ss_pred hCCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 668888777 4887777677654333
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=4.6e-27 Score=200.76 Aligned_cols=139 Identities=14% Similarity=0.185 Sum_probs=102.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeecCCCC--------CCCCC-CC------cCCHHHhhh-------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~--l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~------- 58 (236)
-+++|+||||||||||+++|+|+ ++|++|+|.++|.++.. ..+.| +| ..++++++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL 109 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc
Confidence 47899999999999999999998 78999999999987532 12344 22 345555442
Q ss_pred ------------HHHHHHHhCCC-CCCchhhhHHh-hhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026569 59 ------------LEDVMEELGLG-PNGGLIYCMEH-LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 59 ------------~~~~l~~~~l~-~~~~~~~~~~~-~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
+.++++.+|+. ...... ... +++|++ ++||++++. +|+++||||||+ ||+.++..++ +
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~~~l~-~ 184 (250)
T 2d2e_A 110 GREVGVAEFWTKVKKALELLDWDESYLSRY--LNEGFSGGEKKRNEILQLLVL--EPTYAVLDETDSGLDIDALKVVA-R 184 (250)
T ss_dssp TSCCCHHHHHHHHHHHHHHHTCCGGGGGSB--TTCC----HHHHHHHHHHHHH--CCSEEEEECGGGTTCHHHHHHHH-H
T ss_pred cccCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-H
Confidence 34577778884 322211 123 666654 999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCcEEEEEecccccccchhhH
Q 026569 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (236)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (236)
++++++++|.+++++. |.......+
T Consensus 185 ~l~~l~~~g~tvi~vt----Hd~~~~~~~ 209 (250)
T 2d2e_A 185 GVNAMRGPNFGALVIT----HYQRILNYI 209 (250)
T ss_dssp HHHHHCSTTCEEEEEC----SSSGGGGTS
T ss_pred HHHHHHhcCCEEEEEe----cCHHHHHHh
Confidence 9999866688887774 776655554
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.93 E-value=8.8e-27 Score=198.74 Aligned_cols=137 Identities=18% Similarity=0.113 Sum_probs=101.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++. +
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 115 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV 115 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHH
Confidence 4789999999999999999999999999999999987632 12233 22 236777764 3
Q ss_pred HHHHHHhCCCCCCchh---------hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026569 60 EDVMEELGLGPNGGLI---------YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~~~~~~---------~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++.+++....... .....+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++++++
T Consensus 116 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~ 192 (247)
T 2ff7_A 116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIM-RNMHKIC 192 (247)
T ss_dssp HHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc
Confidence 4566666664211000 00134666654 999999999 999999999999 9999999999 9999985
Q ss_pred hCCCcEEEEEecccccccch
Q 026569 128 SRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~ 147 (236)
+|.+++++. |.+...
T Consensus 193 -~g~tviivt----H~~~~~ 207 (247)
T 2ff7_A 193 -KGRTVIIIA----HRLSTV 207 (247)
T ss_dssp -TTSEEEEEC----SSGGGG
T ss_pred -CCCEEEEEe----CCHHHH
Confidence 588887774 766543
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.93 E-value=1.7e-26 Score=199.11 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=104.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC--CcCCCceEEEeecCCCC--------CCCCC-CC------cCCHHHhh--------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELI-------- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~--l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i-------- 57 (236)
-+++|+||||||||||+|+|+|+ ++|++|+|.++|.++.. ..++| +| ..++.+++
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~ 126 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 126 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhh
Confidence 47899999999999999999999 47899999999976531 11233 22 23333322
Q ss_pred ---------------hHHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026569 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 58 ---------------~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
.++++++.+|+.. ..... ....+++|++ ++||++++. +|++|||||||+ ||+.++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~LSgGq~QRv~iAraL~~--~p~lLlLDEPts~LD~~~~~~l 203 (267)
T 2zu0_C 127 SYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS-VNVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKVV 203 (267)
T ss_dssp HGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB-TTTTCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHH
T ss_pred hhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-cccCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHH
Confidence 1456788888863 22221 1123666654 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhH-hh
Q 026569 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF-IS 152 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~-~~ 152 (236)
+ +++++++++|.+++++. |.+.....+ ++
T Consensus 204 ~-~~l~~l~~~g~tviivt----Hd~~~~~~~~~d 233 (267)
T 2zu0_C 204 A-DGVNSLRDGKRSFIIVT----HYQRILDYIKPD 233 (267)
T ss_dssp H-HHHHTTCCSSCEEEEEC----SSGGGGGTSCCS
T ss_pred H-HHHHHHHhcCCEEEEEe----eCHHHHHhhcCC
Confidence 9 99998866688887774 776655543 44
No 28
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.93 E-value=2.8e-26 Score=196.33 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=106.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC--CCCCCCCCCcCCHHHhh--------------------hHH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELI--------------------SLE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~--~~~~~~~~~~~~i~~~i--------------------~~~ 60 (236)
-+++|+||||||||||+++|+|+++|++|+|.+.. .+ ..+...+++..++++++ .++
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~-~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ-SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECS-CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec-cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 47899999999999999999999999999997421 11 01111222233444432 156
Q ss_pred HHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCcEEEE
Q 026569 61 DVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (236)
Q Consensus 61 ~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (236)
++++.+|+.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++ |.+++++
T Consensus 111 ~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~~g~tvi~v 185 (253)
T 2nq2_C 111 QALDYLNLTHLAKRE--FTSLSGGQRQLILIARAIAS--ECKLILLDEPTSALDLANQDIVL-SLLIDLAQSQNMTVVFT 185 (253)
T ss_dssp HHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--TCSEEEESSSSTTSCHHHHHHHH-HHHHHHHHTSCCEEEEE
T ss_pred HHHHHcCChHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 688888987543222 245666654 999999999 999999999999 9999999999 999998765 8888877
Q ss_pred EecccccccchhhHhhhhHH
Q 026569 137 YLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 137 ~l~d~~~~~d~~~~~~~~l~ 156 (236)
. |.+.....+++.+++
T Consensus 186 t----Hd~~~~~~~~d~v~~ 201 (253)
T 2nq2_C 186 T----HQPNQVVAIANKTLL 201 (253)
T ss_dssp E----SCHHHHHHHCSEEEE
T ss_pred e----cCHHHHHHhCCEEEE
Confidence 5 888777777764443
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.93 E-value=1.6e-26 Score=196.61 Aligned_cols=136 Identities=16% Similarity=0.116 Sum_probs=103.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CCc-----CCHHHhhh-----------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +|+ .++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~ 108 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDED 108 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCHHH
Confidence 5789999999999999999999999999999999976532 23444 321 25666653
Q ss_pred HHHHHHHhCCCCCCchh---------hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026569 59 LEDVMEELGLGPNGGLI---------YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~---------~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+++....... .....++++++ ++||++++. +|+++||||||+ ||+.++..++ ++++++
T Consensus 109 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~ 185 (243)
T 1mv5_A 109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQ-KALDSL 185 (243)
T ss_dssp HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHH-HHHHHH
T ss_pred HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHh
Confidence 55677778876532211 01124666654 999999999 999999999999 9999999999 889988
Q ss_pred HhCCCcEEEEEecccccccc
Q 026569 127 KSRNFNVCAVYLLDSQFITD 146 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d 146 (236)
+ +|.+++++. |....
T Consensus 186 ~-~~~tvi~vt----H~~~~ 200 (243)
T 1mv5_A 186 M-KGRTTLVIA----HRLST 200 (243)
T ss_dssp H-TTSEEEEEC----CSHHH
T ss_pred c-CCCEEEEEe----CChHH
Confidence 6 588887774 76543
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=2.1e-26 Score=198.17 Aligned_cols=147 Identities=12% Similarity=0.183 Sum_probs=112.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC----CCCCC-C-CC----cCCHHHhhh------------HH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFD-Y-PV----AMDIRELIS------------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~----~~~~~-~-~~----~~~i~~~i~------------~~ 60 (236)
-+++|+||||||||||+|+|+|++ |++|+|.++|.++. ...++ | +| ..++++++. ++
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~ 109 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL 109 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHH
Confidence 368999999999999999999999 99999999997642 23455 5 33 346777654 45
Q ss_pred HHHHHhCCC-CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026569 61 DVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 61 ~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
++++.+++. ...... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ ++++++++ +++++
T Consensus 110 ~~l~~~gl~~~~~~~~--~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~~~~---tviiv 181 (263)
T 2pjz_A 110 EMLKALKLGEEILRRK--LYKLSAGQSVLVRTSLALAS--QPEIVGLDEPFENVDAARRHVIS-RYIKEYGK---EGILV 181 (263)
T ss_dssp HHHHHTTCCGGGGGSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHSCS---EEEEE
T ss_pred HHHHHcCCChhHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCccccCHHHHHHHH-HHHHHhcC---cEEEE
Confidence 788889987 433222 245666654 999999999 999999999999 9999999999 88887743 77666
Q ss_pred EecccccccchhhHhh-hhHHHHHHHH
Q 026569 137 YLLDSQFITDVTKFIS-GCMASLSAMV 162 (236)
Q Consensus 137 ~l~d~~~~~d~~~~~~-~~l~~~~~~i 162 (236)
. |.......+++ .++....+.+
T Consensus 182 t----Hd~~~~~~~~d~~i~~l~~G~i 204 (263)
T 2pjz_A 182 T----HELDMLNLYKEYKAYFLVGNRL 204 (263)
T ss_dssp E----SCGGGGGGCTTSEEEEEETTEE
T ss_pred E----cCHHHHHHhcCceEEEEECCEE
Confidence 4 77777777776 6555544444
No 31
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.92 E-value=1.8e-26 Score=199.42 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=98.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhhH----------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELISL---------- 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~~---------- 59 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 125 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHH
Confidence 4789999999999999999999999999999999977532 11233 22 1366666531
Q ss_pred ----------HHHHHHh--CCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026569 60 ----------EDVMEEL--GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (236)
Q Consensus 60 ----------~~~l~~~--~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~ 124 (236)
.++++.+ |+....... ...+++|++ ++||++|+. +|++|||||||+ ||+.++..++ ++++
T Consensus 126 ~~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~ 200 (271)
T 2ixe_A 126 ITAVAMESGAHDFISGFPQGYDTEVGET--GNQLSGGQRQAVALARALIR--KPRLLILDNATSALDAGNQLRVQ-RLLY 200 (271)
T ss_dssp HHHHHHHHTCHHHHHHSTTGGGSBCCGG--GTTSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred HHHHHHHHhHHHHHHhhhcchhhhhcCC--cCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHH
Confidence 2233444 343322221 234666654 999999999 999999999999 9999999999 9999
Q ss_pred HHHh-CCCcEEEEEecccccccc
Q 026569 125 HLKS-RNFNVCAVYLLDSQFITD 146 (236)
Q Consensus 125 ~l~~-~~~~ii~v~l~d~~~~~d 146 (236)
++++ .|.+++++. |.+..
T Consensus 201 ~~~~~~g~tviivt----Hd~~~ 219 (271)
T 2ixe_A 201 ESPEWASRTVLLIT----QQLSL 219 (271)
T ss_dssp HCTTTTTSEEEEEC----SCHHH
T ss_pred HHHhhcCCEEEEEe----CCHHH
Confidence 8864 488887774 76553
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.91 E-value=1.9e-25 Score=196.06 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=107.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++. +
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~ 160 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV 160 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHH
Confidence 4789999999999999999999999999999999988743 22333 22 236888764 4
Q ss_pred HHHHHHhCCCCCCc-----hh----hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026569 60 EDVMEELGLGPNGG-----LI----YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~~~~-----~~----~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+... .. .....+++|++ ++|||+++. +|++|||||||+ ||+.+...++ +.++++.
T Consensus 161 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~--~p~iLlLDEPts~LD~~~~~~i~-~~l~~l~ 237 (306)
T 3nh6_A 161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK--APGIILLDEATSALDTSNERAIQ-ASLAKVC 237 (306)
T ss_dssp HHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSSCCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc
Confidence 45555555432100 00 00023556554 999999999 999999999999 9999999999 8888885
Q ss_pred hCCCcEEEEEecccccccchhhHhhhhHHHHHHHH
Q 026569 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
+ +.|+|+| +|.+..... ++.++++..|.+
T Consensus 238 ~-~~Tvi~i----tH~l~~~~~-aD~i~vl~~G~i 266 (306)
T 3nh6_A 238 A-NRTTIVV----AHRLSTVVN-ADQILVIKDGCI 266 (306)
T ss_dssp T-TSEEEEE----CCSHHHHHT-CSEEEEEETTEE
T ss_pred C-CCEEEEE----EcChHHHHc-CCEEEEEECCEE
Confidence 4 6788777 477665443 544443333333
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.91 E-value=5.5e-25 Score=188.94 Aligned_cols=136 Identities=18% Similarity=0.138 Sum_probs=98.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-+++|+||||||||||+++|+|+++| +|+|.++|.++.. ..++| +| ..++++++. +
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 125 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEV 125 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHH
Confidence 47899999999999999999999987 8999999977532 23333 22 236777653 3
Q ss_pred HHHHHHhCCCCC------Cch---hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026569 60 EDVMEELGLGPN------GGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~~------~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++.+++... +.. ......+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++++++
T Consensus 126 ~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~l~ 202 (260)
T 2ghi_A 126 IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK--DPKIVIFDEATSSLDSKTEYLFQ-KAVEDLR 202 (260)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCCCTTCHHHHHHHH-HHHHHHT
T ss_pred HHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc
Confidence 345555554321 000 000124556654 999999999 999999999999 9999999999 9999985
Q ss_pred hCCCcEEEEEecccccccch
Q 026569 128 SRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~ 147 (236)
+ +.+++++. |.....
T Consensus 203 ~-~~tviivt----H~~~~~ 217 (260)
T 2ghi_A 203 K-NRTLIIIA----HRLSTI 217 (260)
T ss_dssp T-TSEEEEEC----SSGGGS
T ss_pred C-CCEEEEEc----CCHHHH
Confidence 4 78887774 665543
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.90 E-value=4.2e-25 Score=186.28 Aligned_cols=135 Identities=18% Similarity=0.112 Sum_probs=93.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecC-CCCCCCCCCCcCCHHHhhh---------HHHHHHHhCCCC--
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP-- 70 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~~-- 70 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+++. ++++++. ..++++.+++..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~ 113 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDI 113 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHH
Confidence 4789999999999999999999999999999998721 01122222233 7777764 233444444431
Q ss_pred ----CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH-HHHHHhCCCcEEEEEec
Q 026569 71 ----NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAVYLL 139 (236)
Q Consensus 71 ----~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l-l~~l~~~~~~ii~v~l~ 139 (236)
.+... .....++++++ ++||++++. +|+++||||||+ ||+.++..++ +. ++++. .+.+++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~-~~~tvi~vt-- 187 (229)
T 2pze_A 114 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILVT-- 187 (229)
T ss_dssp TTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESTTTTSCHHHHHHHH-HHCCCCCT-TTSEEEEEC--
T ss_pred HhCcccccccccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECcccCCCHHHHHHHH-HHHHHHhh-CCCEEEEEc--
Confidence 11000 00134666654 999999999 999999999999 9999999888 64 45553 477887663
Q ss_pred ccccccc
Q 026569 140 DSQFITD 146 (236)
Q Consensus 140 d~~~~~d 146 (236)
|....
T Consensus 188 --H~~~~ 192 (229)
T 2pze_A 188 --SKMEH 192 (229)
T ss_dssp --CCHHH
T ss_pred --CChHH
Confidence 76543
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.90 E-value=7.3e-25 Score=185.72 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=95.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecC-CCCCCCCCCCcCCHHHhhh---------HHHHHHHhC-----
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELG----- 67 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~----- 67 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.- ...+.. +.+..++++++. .+++.+.++
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~ 110 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQA-WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDL 110 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSC-CCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCC-cCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHH
Confidence 4789999999999999999999999999999998721 011221 123456777654 233444333
Q ss_pred -CCCCCch---hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH---HHHhCCCcEEEEE
Q 026569 68 -LGPNGGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD---HLKSRNFNVCAVY 137 (236)
Q Consensus 68 -l~~~~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~---~l~~~~~~ii~v~ 137 (236)
+.+.+.. ......+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++. +++ +|.+++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~~~-~~~tviivt 186 (237)
T 2cbz_A 111 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIF-ENVIGPKGML-KNKTRILVT 186 (237)
T ss_dssp TTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHTTSTTSTT-TTSEEEEEC
T ss_pred HhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHHhhc-CCCEEEEEe
Confidence 2221100 011134666654 999999999 999999999999 9999999998 7663 343 478887774
Q ss_pred ecccccccchhhHhh
Q 026569 138 LLDSQFITDVTKFIS 152 (236)
Q Consensus 138 l~d~~~~~d~~~~~~ 152 (236)
|..... .+++
T Consensus 187 ----H~~~~~-~~~d 196 (237)
T 2cbz_A 187 ----HSMSYL-PQVD 196 (237)
T ss_dssp ----SCSTTG-GGSS
T ss_pred ----cChHHH-HhCC
Confidence 766543 2454
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.1e-24 Score=196.85 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=107.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh---------HH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~ 60 (236)
-+++|+||||||||||+|+|+|+++ ++|+|.++|.++.. ..++| +| ..++++++. +.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~ 126 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW 126 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHH
Confidence 4789999999999999999999998 89999999987642 22333 22 236787764 66
Q ss_pred HHHHHhCCCCCCchhhhHH----------hhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026569 61 DVMEELGLGPNGGLIYCME----------HLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 61 ~~l~~~~l~~~~~~~~~~~----------~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
++++.+++....... +.+ .++++++ ++|||+|+. +|++|||||||+ ||+..+..+. +.++++.
T Consensus 127 ~~l~~~~L~~~~~~~-p~~l~~~i~~~g~~LSGGqrQRvalARAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~~~ 202 (390)
T 3gd7_A 127 KVADEVGLRSVIEQF-PGKLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPVTYQIIR-RTLKQAF 202 (390)
T ss_dssp HHHHHTTCHHHHTTS-TTGGGCEECTTTTTSCHHHHHHHHHHHHHHT--TCCEEEEESHHHHSCHHHHHHHH-HHHHTTT
T ss_pred HHHHHhCCHHHHhhc-ccccccccccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence 788888886432111 111 1666654 999999999 999999999999 9999999988 8887763
Q ss_pred hCCCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026569 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
.+.++++++ |... ....+++++++..+.
T Consensus 203 -~~~tvi~vt----Hd~e-~~~~aDri~vl~~G~ 230 (390)
T 3gd7_A 203 -ADCTVILCE----ARIE-AMLECDQFLVIEENK 230 (390)
T ss_dssp -TTSCEEEEC----SSSG-GGTTCSEEEEEETTE
T ss_pred -CCCEEEEEE----cCHH-HHHhCCEEEEEECCE
Confidence 478887775 6643 333354444433333
No 37
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.89 E-value=8.5e-24 Score=198.36 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=112.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC--CCCCCCCcCCHHHhhh-------------HHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS-------------LEDVMEELG 67 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~~~~~~i~~~i~-------------~~~~l~~~~ 67 (236)
-+++|+||||||||||+++|+|+++|++|+|.+.+..++. +........++++++. ++++++.++
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~ 374 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN 374 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence 4789999999999999999999999999999987654421 2211122345665543 456677777
Q ss_pred CCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEeccccc
Q 026569 68 LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQF 143 (236)
Q Consensus 68 l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~ 143 (236)
+.+..... ...+++|++ ++||++|+. +|++|||||||+ ||+.++..++ ++++++++ .|.++++|. |+
T Consensus 375 l~~~~~~~--~~~LSGGq~QRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~~l~~l~~~~g~tvi~vs----Hd 445 (538)
T 3ozx_A 375 LHRLLESN--VNDLSGGELQKLYIAATLAK--EADLYVLDQPSSYLDVEERYIVA-KAIKRVTRERKAVTFIID----HD 445 (538)
T ss_dssp GGGCTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEEC----SC
T ss_pred CHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEe----CC
Confidence 76543222 245666654 999999999 999999999999 9999999999 99999875 688888774 88
Q ss_pred ccchhhHhhhhHHHH
Q 026569 144 ITDVTKFISGCMASL 158 (236)
Q Consensus 144 ~~d~~~~~~~~l~~~ 158 (236)
+.....+|+++++..
T Consensus 446 l~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 446 LSIHDYIADRIIVFK 460 (538)
T ss_dssp HHHHHHHCSEEEEEE
T ss_pred HHHHHHhCCEEEEEe
Confidence 888888887666543
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.89 E-value=8.1e-24 Score=200.23 Aligned_cols=135 Identities=17% Similarity=0.156 Sum_probs=100.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh-----------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| +| ..+++|++.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 449 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ 449 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHH
Confidence 4789999999999999999999999999999999987632 23444 33 236777663
Q ss_pred HHHHHHHhCCCCCCchh---------hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026569 59 LEDVMEELGLGPNGGLI---------YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~---------~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
++++++..++.+..... .....+++|++ ++|||+++. +|+++||||||+ ||+.+...+. +.++++
T Consensus 450 ~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~ 526 (582)
T 3b5x_A 450 IEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR--DAPVLILDEATSALDTESERAIQ-AALDEL 526 (582)
T ss_pred HHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 34556666654211000 00124566654 999999999 999999999999 9999999998 888888
Q ss_pred HhCCCcEEEEEeccccccc
Q 026569 127 KSRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~ 145 (236)
.+ |+|++++. |...
T Consensus 527 ~~-~~tvi~it----H~~~ 540 (582)
T 3b5x_A 527 QK-NKTVLVIA----HRLS 540 (582)
T ss_pred cC-CCEEEEEe----cCHH
Confidence 54 88887774 7654
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.88 E-value=1.8e-23 Score=197.89 Aligned_cols=136 Identities=15% Similarity=0.094 Sum_probs=100.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh-----------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------- 58 (236)
-.++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| +| ..+++|++.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 449 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ 449 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHH
Confidence 4789999999999999999999999999999999987642 12333 22 236777764
Q ss_pred HHHHHHHhCCCCCCch-----h----hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026569 59 LEDVMEELGLGPNGGL-----I----YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~-----~----~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
++++++..++.+.... . .....+++|++ ++|||+++. +|+++||||||+ ||+.+...+. +.++++
T Consensus 450 ~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~ 526 (582)
T 3b60_A 450 IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDEL 526 (582)
T ss_dssp HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 3455555555321000 0 00123556654 999999999 999999999999 9999999999 888888
Q ss_pred HhCCCcEEEEEecccccccc
Q 026569 127 KSRNFNVCAVYLLDSQFITD 146 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d 146 (236)
.+ |+|++++. |.+..
T Consensus 527 ~~-~~tvi~it----H~~~~ 541 (582)
T 3b60_A 527 QK-NRTSLVIA----HRLST 541 (582)
T ss_dssp HT-TSEEEEEC----SCGGG
T ss_pred hC-CCEEEEEe----ccHHH
Confidence 65 88887774 76653
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.88 E-value=2.5e-23 Score=197.40 Aligned_cols=152 Identities=19% Similarity=0.155 Sum_probs=108.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh-----------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| +| ..+++|++.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 450 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTA 450 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCH
Confidence 4789999999999999999999999999999999987642 12333 22 236777763
Q ss_pred --HHHHHHHhCCCC------CCchhh---hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026569 59 --LEDVMEELGLGP------NGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (236)
Q Consensus 59 --~~~~l~~~~l~~------~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~ 124 (236)
++++++.+++.+ .+.... .-..+++|++ ++|||+++. +|+++||||||+ ||+.++..+. +.++
T Consensus 451 ~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~ 527 (595)
T 2yl4_A 451 EEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK--NPKILLLDEATSALDAENEYLVQ-EALD 527 (595)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH--CCSEEEEECCCSSCCHHHHHHHH-HHHH
T ss_pred HHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECcccCCCHHHHHHHH-HHHH
Confidence 445666666531 110000 0024566654 999999999 999999999999 9999999999 8888
Q ss_pred HHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026569 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
++.+ ++|++++. |..... ..++.+++...|.+.
T Consensus 528 ~~~~-~~tvi~it----H~~~~~-~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 528 RLMD-GRTVLVIA----HRLSTI-KNANMVAVLDQGKIT 560 (595)
T ss_dssp HHHT-TSEEEEEC----CCHHHH-HHSSEEEEEETTEEE
T ss_pred HHhc-CCEEEEEe----cCHHHH-HcCCEEEEEECCEEE
Confidence 8865 78887774 776544 346555544444443
No 41
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.88 E-value=4.6e-23 Score=195.80 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=111.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC--CCCCCCCCcCCHHHhhh------------HHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL 68 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i~------------~~~~l~~~~l 68 (236)
-+++|+||||||||||+|+|+|+++|++|+|.+. ..++ .+........++.+++. +.++++.+++
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 4789999999999999999999999999999762 1110 12222223445655432 4567889999
Q ss_pred CCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEecccccc
Q 026569 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI 144 (236)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~ 144 (236)
.+..... ...+++|.+ ++||++|+. +|++|||||||+ ||+.++..++ ++++++.+ .|.++++| +|++
T Consensus 462 ~~~~~~~--~~~LSGGe~QRv~iAraL~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~v----sHd~ 532 (607)
T 3bk7_A 462 IDLYDRN--VEDLSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDV 532 (607)
T ss_dssp TTTTTSB--GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSCH
T ss_pred chHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCH
Confidence 7644332 345777654 999999999 999999999999 9999999999 99999864 68888877 4888
Q ss_pred cchhhHhhhhHHHH
Q 026569 145 TDVTKFISGCMASL 158 (236)
Q Consensus 145 ~d~~~~~~~~l~~~ 158 (236)
.....+++++++..
T Consensus 533 ~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 533 LMIDYVSDRLIVFE 546 (607)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHHhCCEEEEEc
Confidence 88888888776654
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.88 E-value=1.9e-23 Score=197.62 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=100.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| +| +.+++|++. +
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 447 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV 447 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHH
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHH
Confidence 5789999999999999999999999999999999987642 12333 22 237888874 4
Q ss_pred HHHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026569 60 EDVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ .+... ..-..+++|++ ++|||+++. +|+++||||||+ ||+.+...+. +.++++.
T Consensus 448 ~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 524 (578)
T 4a82_A 448 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQ-EALDVLS 524 (578)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHT
T ss_pred HHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHc
Confidence 44555554421 11000 00124666654 999999999 999999999999 9999998888 8888885
Q ss_pred hCCCcEEEEEecccccccch
Q 026569 128 SRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~ 147 (236)
+++|++++. |.+...
T Consensus 525 -~~~t~i~it----H~l~~~ 539 (578)
T 4a82_A 525 -KDRTTLIVA----HRLSTI 539 (578)
T ss_dssp -TTSEEEEEC----SSGGGT
T ss_pred -CCCEEEEEe----cCHHHH
Confidence 467887774 776644
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.88 E-value=5.4e-23 Score=193.00 Aligned_cols=145 Identities=18% Similarity=0.144 Sum_probs=108.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceE---------EEeecCCC---------CCCCCC-CCc---------CCHH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------AENFDY-PVA---------MDIR 54 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i---------~i~~~d~~---------~~~~~~-~~~---------~~i~ 54 (236)
-+++|+||||||||||+|+|+|+++|++|++ .+.|.++. ...+.+ ++. .++.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~ 127 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI 127 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHH
Confidence 4789999999999999999999999999995 23443321 011111 110 1455
Q ss_pred Hhh-------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026569 55 ELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (236)
Q Consensus 55 ~~i-------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~ 124 (236)
+++ .++++++.+|+....... ...++++++ ++||++++. +|++|||||||+ ||+.++..++ ++++
T Consensus 128 e~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LSgGekQRv~iAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~ 202 (538)
T 1yqt_A 128 ELLKKADETGKLEEVVKALELENVLERE--IQHLSGGELQRVAIAAALLR--NATFYFFDEPSSYLDIRQRLNAA-RAIR 202 (538)
T ss_dssp HHHHHHCSSSCHHHHHHHTTCTTTTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred HHHhhhhHHHHHHHHHHHcCCChhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence 554 278899999997653322 345777654 999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026569 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++.|.++++|. |.+.....+|+.+++
T Consensus 203 ~l~~~g~tvi~vs----Hd~~~~~~~~dri~v 230 (538)
T 1yqt_A 203 RLSEEGKSVLVVE----HDLAVLDYLSDIIHV 230 (538)
T ss_dssp HHHHTTCEEEEEC----SCHHHHHHHCSEEEE
T ss_pred HHHhcCCEEEEEe----CCHHHHHHhCCEEEE
Confidence 9987788988774 777766677766554
No 44
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=3.3e-23 Score=196.31 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=108.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
..++|+||||||||||+++|+|+++|++|+|.++|.|+.. +.++| +| +.+++|++. +
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~ 449 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEI 449 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHH
Confidence 4789999999999999999999999999999999988743 12333 22 236888774 3
Q ss_pred HHHHHHhCCCC------CCch---hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026569 60 EDVMEELGLGP------NGGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ .+-. ...-..+++|++ ++|||+++. +|+++||||||+ ||+.+...+. +.++++.
T Consensus 450 ~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 526 (587)
T 3qf4_A 450 VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK--KPKVLILDDCTSSVDPITEKRIL-DGLKRYT 526 (587)
T ss_dssp HHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT--CCSEEEEESCCTTSCHHHHHHHH-HHHHHHS
T ss_pred HHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHhC
Confidence 33444443321 1100 000123566654 999999999 999999999999 9999999999 8888874
Q ss_pred hCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccc
Q 026569 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~ 180 (236)
+|+|++++. |.+.... .+ .++-++.++.++..
T Consensus 527 -~~~tvi~it----H~l~~~~-~~---------------d~i~vl~~G~i~~~ 558 (587)
T 3qf4_A 527 -KGCTTFIIT----QKIPTAL-LA---------------DKILVLHEGKVAGF 558 (587)
T ss_dssp -TTCEEEEEE----SCHHHHT-TS---------------SEEEEEETTEEEEE
T ss_pred -CCCEEEEEe----cChHHHH-hC---------------CEEEEEECCEEEEE
Confidence 588888775 7765332 34 45566666655543
No 45
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=3.1e-23 Score=196.90 Aligned_cols=137 Identities=14% Similarity=0.160 Sum_probs=100.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| +| +.+++|++. +
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~ 461 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI 461 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHH
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHH
Confidence 5789999999999999999999999999999999987642 12333 22 347888874 3
Q ss_pred HHHHHHhCCCC------CCch---hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026569 60 EDVMEELGLGP------NGGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ .+-. -..-..+++|++ ++|||+++. +|+++||||||+ ||+.+...+. +.++++.
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 538 (598)
T 3qf4_B 462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA--NPKILILDEATSNVDTKTEKSIQ-AAMWKLM 538 (598)
T ss_dssp HHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT--CCSEEEECCCCTTCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHc
Confidence 34444333321 1100 000123556654 999999999 999999999999 9999999998 8888885
Q ss_pred hCCCcEEEEEecccccccch
Q 026569 128 SRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~ 147 (236)
+|+|++++. |.+...
T Consensus 539 -~~~t~i~it----H~l~~~ 553 (598)
T 3qf4_B 539 -EGKTSIIIA----HRLNTI 553 (598)
T ss_dssp -TTSEEEEES----CCTTHH
T ss_pred -CCCEEEEEe----cCHHHH
Confidence 588888774 777644
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.87 E-value=4.6e-23 Score=193.51 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=108.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC--CCCCCCCCcCCHHHhhh------------HHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL 68 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i~------------~~~~l~~~~l 68 (236)
-+++|+||||||||||+++|+|+++|++|+|.+. ..++ .+.....+..++.+++. ++++++.+++
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 4799999999999999999999999999998751 1110 11111123345555432 3455666777
Q ss_pred CCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEecccccc
Q 026569 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI 144 (236)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~ 144 (236)
.+..... ...+++|.+ ++||++++. +|++|||||||+ ||+.++..++ ++++++.+ .|.++++| +|++
T Consensus 392 ~~~~~~~--~~~LSGGe~qrv~lAraL~~--~p~lLlLDEPt~~LD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHd~ 462 (538)
T 1yqt_A 392 IDLYDRE--VNELSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDV 462 (538)
T ss_dssp GGGTTSB--GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----CSCH
T ss_pred hhhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCH
Confidence 6432222 345666654 999999999 999999999999 9999999999 99999864 58898877 4888
Q ss_pred cchhhHhhhhHHHH
Q 026569 145 TDVTKFISGCMASL 158 (236)
Q Consensus 145 ~d~~~~~~~~l~~~ 158 (236)
.....+|+++++..
T Consensus 463 ~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 463 LMIDYVSDRLMVFE 476 (538)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHHhCCEEEEEe
Confidence 88888888777654
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.87 E-value=9.5e-23 Score=193.64 Aligned_cols=145 Identities=18% Similarity=0.168 Sum_probs=108.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceE---------EEeecCCC---------CCCCCC-CC---------cCCHH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------AENFDY-PV---------AMDIR 54 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i---------~i~~~d~~---------~~~~~~-~~---------~~~i~ 54 (236)
-+++|+||||||||||+|+|+|+++|++|++ .+.|.++. ...+.+ ++ ..+++
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~ 197 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 197 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHH
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHH
Confidence 4789999999999999999999999999995 33443321 001111 11 11566
Q ss_pred Hhh-------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026569 55 ELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (236)
Q Consensus 55 ~~i-------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~ 124 (236)
+++ .++++++.+|+....... ...+++|++ ++||++|+. +|++|||||||+ ||+.++..++ ++++
T Consensus 198 e~l~~~~~~~~~~~~L~~lgL~~~~~~~--~~~LSGGekQRvaIAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~ 272 (607)
T 3bk7_A 198 ELLKKVDEVGKFEEVVKELELENVLDRE--LHQLSGGELQRVAIAAALLR--KAHFYFFDEPSSYLDIRQRLKVA-RVIR 272 (607)
T ss_dssp HHHHHTCCSSCHHHHHHHTTCTTGGGSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHHHH-HHHH
T ss_pred HHhhhhHHHHHHHHHHHHcCCCchhCCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence 554 278899999997643222 345777654 999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026569 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++++|.++++|. |++.....+++.+++
T Consensus 273 ~l~~~g~tvIivs----Hdl~~~~~~adri~v 300 (607)
T 3bk7_A 273 RLANEGKAVLVVE----HDLAVLDYLSDVIHV 300 (607)
T ss_dssp HHHHTTCEEEEEC----SCHHHHHHHCSEEEE
T ss_pred HHHhcCCEEEEEe----cChHHHHhhCCEEEE
Confidence 9977788988774 777666666665544
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.87 E-value=9.5e-23 Score=191.25 Aligned_cols=145 Identities=16% Similarity=0.099 Sum_probs=108.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceE-----------EEeecCCCC-------C------CCCCC------CcCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM-----------HIVNLDPAA-------E------NFDYP------VAMD 52 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i-----------~i~~~d~~~-------~------~~~~~------~~~~ 52 (236)
-+++|+||||||||||+|+|+|+++|++|+| .+.|.+... . ...|. ...+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT 105 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSB
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCc
Confidence 5799999999999999999999999999998 444443310 0 11121 0113
Q ss_pred HHHhh-------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026569 53 IRELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 53 i~~~i-------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+++.+ .++++++.+++....... ...++++++ ++||++++. +|++|||||||+ ||+.++..+. ++
T Consensus 106 v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~LSgGe~Qrv~iA~aL~~--~p~illlDEPts~LD~~~~~~l~-~~ 180 (538)
T 3ozx_A 106 VNEILTKIDERGKKDEVKELLNMTNLWNKD--ANILSGGGLQRLLVAASLLR--EADVYIFDQPSSYLDVRERMNMA-KA 180 (538)
T ss_dssp HHHHHHHHCCSSCHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HH
T ss_pred HHHHhhcchhHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HH
Confidence 44433 277899999997543322 345666654 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026569 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
++++++ |.++++|. |.+.....+++.+.+.
T Consensus 181 l~~l~~-g~tii~vs----Hdl~~~~~~~d~i~vl 210 (538)
T 3ozx_A 181 IRELLK-NKYVIVVD----HDLIVLDYLTDLIHII 210 (538)
T ss_dssp HHHHCT-TSEEEEEC----SCHHHHHHHCSEEEEE
T ss_pred HHHHhC-CCEEEEEE----eChHHHHhhCCEEEEe
Confidence 999965 88887774 8777777777655443
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.1e-22 Score=193.17 Aligned_cols=162 Identities=13% Similarity=0.081 Sum_probs=116.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC--CCCCCCCCcCCHHHhhh------------HHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL 68 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i~------------~~~~l~~~~l 68 (236)
-+++|+||||||||||+++|+|+++|++|+.. .+..++ .+........++++++. ++++++.+++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l 457 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDI-PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI 457 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-cCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC
Confidence 46899999999999999999999999999731 111100 01111111224444331 5678899998
Q ss_pred CCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEecccccc
Q 026569 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI 144 (236)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~ 144 (236)
.+..... ...+++|++ ++||++|+. +|++|||||||+ ||+.++..++ ++++++.+ .|.++++|. |++
T Consensus 458 ~~~~~~~--~~~LSGGqkQRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~ll~~l~~~~g~tviivt----Hdl 528 (608)
T 3j16_B 458 DDIIDQE--VQHLSGGELQRVAIVLALGI--PADIYLIDEPSAYLDSEQRIICS-KVIRRFILHNKKTAFIVE----HDF 528 (608)
T ss_dssp TTTSSSB--SSSCCHHHHHHHHHHHHTTS--CCSEEEECCTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEEC----SCH
T ss_pred hhhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEEe----CCH
Confidence 8654332 235666654 999999999 999999999999 9999999999 99999864 688998774 888
Q ss_pred cchhhHhhhhHHHHH--HHHhhCCCeeeeccc
Q 026569 145 TDVTKFISGCMASLS--AMVQLELPHVNILSK 174 (236)
Q Consensus 145 ~d~~~~~~~~l~~~~--~~i~~~~p~i~vlsk 174 (236)
.....+++++++... +.+....++-.+++.
T Consensus 529 ~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 529 IMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 888888888877653 445555555555554
No 50
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.87 E-value=2e-23 Score=181.92 Aligned_cols=147 Identities=17% Similarity=0.087 Sum_probs=97.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecC-CCCCCCCCCCcCCHHHhhh--------HHHHHHHhCCCCC--
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS--------LEDVMEELGLGPN-- 71 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-~~~~~~~~~~~~~i~~~i~--------~~~~l~~~~l~~~-- 71 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+++ .++++++. +.++++.+++...
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~ 143 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKACQLEEDIS 143 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhhCcccchHHHHHHHHHhChHHHHH
Confidence 4789999999999999999999999999999998721 0112222222 37777753 2334444444211
Q ss_pred ----Cch---hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH-HHHHHhCCCcEEEEEecc
Q 026569 72 ----GGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAVYLLD 140 (236)
Q Consensus 72 ----~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l-l~~l~~~~~~ii~v~l~d 140 (236)
+.. ......+++|++ ++||++++. +|+++||||||+ ||+.++..++ ++ +++++ .|++++++.
T Consensus 144 ~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~ll~~~~-~~~tviivt--- 216 (290)
T 2bbs_A 144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILVT--- 216 (290)
T ss_dssp TSTTGGGCBC----CCCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHCCCCCT-TTSEEEEEC---
T ss_pred hccccccchhcCccCcCCHHHHHHHHHHHHHHC--CCCEEEEECCcccCCHHHHHHHH-HHHHHHhh-CCCEEEEEe---
Confidence 000 000124556654 999999999 999999999999 9999999888 64 44553 478887774
Q ss_pred cccccchhhHhhhhHHHHH
Q 026569 141 SQFITDVTKFISGCMASLS 159 (236)
Q Consensus 141 ~~~~~d~~~~~~~~l~~~~ 159 (236)
|.+... .+++.+++...
T Consensus 217 -Hd~~~~-~~~d~i~~l~~ 233 (290)
T 2bbs_A 217 -SKMEHL-KKADKILILHE 233 (290)
T ss_dssp -CCHHHH-HHSSEEEEEET
T ss_pred -cCHHHH-HcCCEEEEEEC
Confidence 776543 34554444333
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.1e-22 Score=190.00 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=106.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEE-----------EeecCCCC-------CCC------CCCC---------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------ENF------DYPV--------- 49 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~-----------i~~~d~~~-------~~~------~~~~--------- 49 (236)
-+++|+||||||||||+|+|+|+++|++|+|. +.|.+... ... .|..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcch
Confidence 47999999999999999999999999999982 22221100 011 1100
Q ss_pred cCCHHHhh---------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHH
Q 026569 50 AMDIRELI---------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (236)
Q Consensus 50 ~~~i~~~i---------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~ 117 (236)
..++.+.+ .++++++.+++....... ...++++++ ++||++++. +|++|||||||+ ||+.++..
T Consensus 184 ~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGe~Qrv~iAraL~~--~p~llllDEPts~LD~~~~~~ 259 (608)
T 3j16_B 184 VQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRD--IEKLSGGELQRFAIGMSCVQ--EADVYMFDEPSSYLDVKQRLN 259 (608)
T ss_dssp SSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSC--TTTCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHH
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCC--hHHCCHHHHHHHHHHHHHHh--CCCEEEEECcccCCCHHHHHH
Confidence 00122221 277899999997643322 245666654 999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026569 118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 118 ~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
+. +++++++++|.++++|. |.+.....+++.+++.
T Consensus 260 l~-~~l~~l~~~g~tvi~vt----Hdl~~~~~~~drv~vl 294 (608)
T 3j16_B 260 AA-QIIRSLLAPTKYVICVE----HDLSVLDYLSDFVCII 294 (608)
T ss_dssp HH-HHHHGGGTTTCEEEEEC----SCHHHHHHHCSEEEEE
T ss_pred HH-HHHHHHHhCCCEEEEEe----CCHHHHHHhCCEEEEE
Confidence 99 99999987788888774 8877777777666544
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.82 E-value=6e-21 Score=194.48 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=100.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh-----------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|.|+++|++|+|.++|.|+.. ..++| +| +.++++++.
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~ 1139 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYE 1139 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHH
Confidence 4789999999999999999999999999999999988743 33444 33 346888763
Q ss_pred -HHHHHHHhCCC------CCCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026569 59 -LEDVMEELGLG------PNGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 -~~~~l~~~~l~------~~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++..++. |.+-.. ..-..+++|++ ++|||+++. +|++|||||||+ ||+.+...+. +.+++
T Consensus 1140 ~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~--~p~iLiLDEpTs~lD~~~~~~i~-~~l~~ 1216 (1284)
T 3g5u_A 1140 EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR--QPHILLLDEATSALDTESEKVVQ-EALDK 1216 (1284)
T ss_dssp HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH--CCSSEEEESCSSSCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 33444444432 111000 00023555544 999999999 999999999999 9999999888 88887
Q ss_pred HHhCCCcEEEEEecccccccch
Q 026569 126 LKSRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~ 147 (236)
+ ..|+|+++|. |.+...
T Consensus 1217 ~-~~~~tvi~is----H~l~~i 1233 (1284)
T 3g5u_A 1217 A-REGRTCIVIA----HRLSTI 1233 (1284)
T ss_dssp H-SSSSCEEEEC----SCTTGG
T ss_pred h-CCCCEEEEEe----cCHHHH
Confidence 6 4588988774 776654
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.82 E-value=3.3e-21 Score=196.85 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=111.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CCc-----CCHHHhhh-----------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~----------- 58 (236)
..+||+||+|||||||+++|.|++.|++|+|.++|.|+.. +.+++ +|+ -|+|+++.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ 1185 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMA 1185 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHH
T ss_pred CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHH
Confidence 4689999999999999999999999999999999998853 34444 442 36888853
Q ss_pred -HHHHHHHhCCC------CCCchhh---hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026569 59 -LEDVMEELGLG------PNGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 -~~~~l~~~~l~------~~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++..++. |.|-... .-..+++|++ ++||||+.. +|++|||||||+ ||..+.+.+. +.+++
T Consensus 1186 ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr--~~~ILiLDEaTSaLD~~tE~~Iq-~~l~~ 1262 (1321)
T 4f4c_A 1186 QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEKVVQ-EALDR 1262 (1321)
T ss_dssp HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSTTSHHHHHHH-HHHTT
T ss_pred HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 55566665552 1110000 0013555554 999999999 999999999999 9999988877 77776
Q ss_pred HHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccch
Q 026569 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~~ 181 (236)
+. +|+|+++| +|.++.... ...|-|+.++.+++..
T Consensus 1263 ~~-~~~TvI~I----AHRLsTi~~----------------aD~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A 1263 AR-EGRTCIVI----AHRLNTVMN----------------ADCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp TS-SSSEEEEE----CSSSSTTTT----------------CSEEEEESSSSEEEEE
T ss_pred Hc-CCCEEEEe----ccCHHHHHh----------------CCEEEEEECCEEEEEC
Confidence 53 47888877 477764332 3577777777776543
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.81 E-value=7.6e-21 Score=193.73 Aligned_cols=161 Identities=16% Similarity=0.117 Sum_probs=111.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
..++|+||||||||||+++|.|+++|++|+|.++|.|+.. ..++| +| .-+++|++. +
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~ 496 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEI 496 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHH
Confidence 4789999999999999999999999999999999987642 12333 22 337888875 2
Q ss_pred HHHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026569 60 EDVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ .+... ..-..+++|++ ++|||++.. +|+++||||||+ ||+.+...+. +.++.+.
T Consensus 497 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~--~p~iliLDEpts~LD~~~~~~i~-~~l~~~~ 573 (1284)
T 3g5u_A 497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEAVVQ-AALDKAR 573 (1284)
T ss_dssp HHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH--CCSEEEEESTTCSSCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHc
Confidence 33333333211 10000 00023556654 999999999 999999999999 9999988877 8887764
Q ss_pred hCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeec
Q 026569 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vl 172 (236)
+|+|+++|. |.+..... ++.+++...|.+.-..+|-.++
T Consensus 574 -~~~t~i~it----H~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~ 612 (1284)
T 3g5u_A 574 -EGRTTIVIA----HRLSTVRN-ADVIAGFDGGVIVEQGNHDELM 612 (1284)
T ss_dssp -TTSEEEEEC----SCHHHHTT-CSEEEECSSSCCCCEECHHHHH
T ss_pred -CCCEEEEEe----cCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 588888774 77665443 6666666566555544444433
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.80 E-value=5.8e-20 Score=176.40 Aligned_cols=87 Identities=10% Similarity=0.009 Sum_probs=64.7
Q ss_pred HHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026569 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 62 ~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~--~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
+++.+|++....... ...++++++ ++||++|+. +|+ +|||||||+ ||+.++..++ +++++++++|.|+++|
T Consensus 185 ~l~~~gL~~~~~~~~-~~~LSGGe~QRv~iArAL~~--~p~~~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRS-AGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIVV 260 (670)
T ss_dssp HHHHTTCTTCCTTCB-GGGSCHHHHHHHHHHHHHHT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHHTTCEEEEE
T ss_pred HHHHcCCchhhhcCC-cccCCHHHHHHHHHHHHHhh--CCCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence 377788875321111 245667654 999999999 888 999999999 9999999999 9999998789999887
Q ss_pred EecccccccchhhHhhhhHHH
Q 026569 137 YLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 137 ~l~d~~~~~d~~~~~~~~l~~ 157 (236)
. |++.. ..+++.++..
T Consensus 261 t----Hd~~~-~~~~d~ii~l 276 (670)
T 3ux8_A 261 E----HDEDT-MLAADYLIDI 276 (670)
T ss_dssp C----CCHHH-HHHCSEEEEE
T ss_pred e----CCHHH-HhhCCEEEEe
Confidence 4 66543 3345555443
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.80 E-value=4.3e-20 Score=188.65 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=114.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
..++|+||+|||||||+++|.|+++|++|+|.++|.|+.. +.++| +| +-||+|++. +
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v 524 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEM 524 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHH
Confidence 4689999999999999999999999999999999988753 23444 32 447888875 4
Q ss_pred HHHHHHhCCC------CCCchhh---hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026569 60 EDVMEELGLG------PNGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~------~~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++. |+|..-. .-..+++|++ ++||||+.. +|+++||||||+ ||..+.+.+. +.++++.
T Consensus 525 ~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~--~~~IliLDE~tSaLD~~te~~i~-~~l~~~~ 601 (1321)
T 4f4c_A 525 VAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESEGIVQ-QALDKAA 601 (1321)
T ss_dssp HHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHH
T ss_pred HHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc--CCCEEEEecccccCCHHHHHHHH-HHHHHHh
Confidence 4455444331 1110000 0023566654 999999999 999999999999 9999987777 7788775
Q ss_pred hCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccc
Q 026569 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk 174 (236)
+|+|+|+|. |.++.. +.++.+++...|.+.-.++|-+++.+
T Consensus 602 -~~~T~iiia----Hrls~i-~~aD~Iivl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 602 -KGRTTIIIA----HRLSTI-RNADLIISCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp -TTSEEEEEC----SCTTTT-TTCSEEEEEETTEEEEEECHHHHHTT
T ss_pred -CCCEEEEEc----ccHHHH-HhCCEEEEeeCCeeeccCCHHHHHHh
Confidence 478888774 766533 34666666666666655555444433
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.78 E-value=2.7e-20 Score=183.74 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=62.6
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEE
Q 026569 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (236)
++++++.+|+.+..........+++|++ +.||++++. +|++|||||||+ ||+.+...++ +.+++ .+.+|++
T Consensus 880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~--~P~LLLLDEPT~gLD~~s~~~L~-~~L~~---~g~tVIi 953 (986)
T 2iw3_A 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQ--RPHLIVLDEPTNYLDRDSLGALS-KALKE---FEGGVII 953 (986)
T ss_dssp HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTT--CCSEEEEECGGGTCCHHHHHHHH-HHHHS---CSSEEEE
T ss_pred HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHHHH---hCCEEEE
Confidence 5678888888642101112345777655 999999999 999999999999 9999987777 55544 3567776
Q ss_pred EEecccccccchhhHhhhhHHH
Q 026569 136 VYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 136 v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
+ +|+......+|+.++..
T Consensus 954 I----SHD~e~v~~l~DrVivL 971 (986)
T 2iw3_A 954 I----THSAEFTKNLTEEVWAV 971 (986)
T ss_dssp E----CSCHHHHTTTCCEEECC
T ss_pred E----ECCHHHHHHhCCEEEEE
Confidence 6 48777666666544443
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.76 E-value=8.7e-20 Score=151.65 Aligned_cols=124 Identities=18% Similarity=0.214 Sum_probs=74.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeec--CC--CCCCCCC-CCcCCHHHhh-hH-HHHHHHh-CCCCCCch
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL--DP--AAENFDY-PVAMDIRELI-SL-EDVMEEL-GLGPNGGL 74 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~--d~--~~~~~~~-~~~~~i~~~i-~~-~~~l~~~-~l~~~~~~ 74 (236)
-+++|+||||||||||+++|+|+ +|++|+|..... +. ....++| +|+. ++++ .. ......+ +.......
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--~enl~~~~~~~~~~~~~~~~~~~~ 99 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL--NEKIDPYLRPLHDALRDMVEPEVI 99 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------CTTTHHHHHHHTTTSCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--HHHHHHHHHHHHHHHHHhccHHHH
Confidence 47899999999999999999999 999999954211 11 1234666 4432 3333 11 0011111 11111000
Q ss_pred hhhHHh-hhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 75 IYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 75 ~~~~~~-~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
...++. +...++++||++++. +|+++||||||+- ++..++ ++++++ ++|.+++ +.
T Consensus 100 ~~~l~~glGq~qrv~lAraL~~--~p~lllLDEPts~---~~~~l~-~~l~~l-~~g~tii-vt 155 (208)
T 3b85_A 100 PKLMEAGIVEVAPLAYMRGRTL--NDAFVILDEAQNT---TPAQMK-MFLTRL-GFGSKMV-VT 155 (208)
T ss_dssp HHHHHTTSEEEEEGGGGTTCCB--CSEEEEECSGGGC---CHHHHH-HHHTTB-CTTCEEE-EE
T ss_pred HHHHHhCCchHHHHHHHHHHhc--CCCEEEEeCCccc---cHHHHH-HHHHHh-cCCCEEE-EE
Confidence 001111 011123899999999 9999999999977 777777 888887 5688887 53
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.75 E-value=1.2e-18 Score=172.10 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=97.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh-CCc--C--CCceEEEeecCCCCCCCCCCCcCCHHHhhh---------HHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR-HCE--T--VRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGL 68 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g-~l~--~--~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l 68 (236)
-+++|+||||||||||+|+|+| .+. + ....+.+..+++ ....+..++.+++. +.++++.+|+
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~----~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDI----DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCC----CCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccc----cccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 4789999999999999999995 221 0 011111111110 01223445666542 6678899998
Q ss_pred CCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEeccccccc
Q 026569 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~ 145 (236)
.... .......+++|++ ++||++++. +|++|||||||+ ||+.++..+. +++++ .|.+++++ +|...
T Consensus 538 ~~~~-~~~~~~~LSGGqkQRvaLArAL~~--~P~lLLLDEPTs~LD~~~~~~l~-~~L~~---~g~tvIiv----SHdl~ 606 (986)
T 2iw3_A 538 TDEM-IAMPISALSGGWKMKLALARAVLR--NADILLLDEPTNHLDTVNVAWLV-NYLNT---CGITSITI----SHDSV 606 (986)
T ss_dssp CHHH-HHSBGGGCCHHHHHHHHHHHHHHT--TCSEEEEESTTTTCCHHHHHHHH-HHHHH---SCSEEEEE----CSCHH
T ss_pred Chhh-hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHh---CCCEEEEE----ECCHH
Confidence 5211 1112345777755 999999999 999999999999 9999999998 87776 47888777 47777
Q ss_pred chhhHhhhhHHHHHHHH
Q 026569 146 DVTKFISGCMASLSAMV 162 (236)
Q Consensus 146 d~~~~~~~~l~~~~~~i 162 (236)
....+++.++....+.+
T Consensus 607 ~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 607 FLDNVCEYIINYEGLKL 623 (986)
T ss_dssp HHHHHCSEEEEEETTEE
T ss_pred HHHHhCCEEEEEECCee
Confidence 77777776665544443
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.74 E-value=1.8e-18 Score=165.99 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=64.4
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCc
Q 026569 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p---~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (236)
..+.++.+++....... ....++++++ ++||++|+. +| ++||+||||+ ||+.++..++ +++++++++|.|
T Consensus 523 ~~~~l~~~~l~~~~~~~-~~~~LSgG~~qrv~iAraL~~--~p~~p~llllDEPt~~LD~~~~~~i~-~~l~~l~~~g~t 598 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQ-PATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDT 598 (670)
T ss_dssp HHHHHHHTTCTTSBTTC-CGGGCCHHHHHHHHHHHHHHS--CCCSCEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHHcCCchhhccC-CchhCCHHHHHHHHHHHHHhh--CCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCE
Confidence 44667778886432111 1245777654 999999998 76 5999999999 9999999999 999999878999
Q ss_pred EEEEEecccccccchhhHhhhhH
Q 026569 133 VCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 133 ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
|++|. |++... .+++.++
T Consensus 599 vi~vt----Hd~~~~-~~~d~i~ 616 (670)
T 3ux8_A 599 VLVIE----HNLDVI-KTADYII 616 (670)
T ss_dssp EEEEC----CCHHHH-TTCSEEE
T ss_pred EEEEe----CCHHHH-HhCCEEE
Confidence 98874 776533 3454333
No 61
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.74 E-value=4.3e-19 Score=142.51 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-ccHH----------------hHHHHHHHHHHHHHhCCCcEEEEEecccccccch
Q 026569 87 DWLAEELDNYLDDDYLVFDCPGQ-IELF----------------THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 87 ~~la~~l~~~~~p~~lllDEPt~-LD~~----------------~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~ 147 (236)
++||++++. +|++++||||++ ||+. .+..+. +++++++++|.+++++. |.+.+.
T Consensus 92 v~iAral~~--~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~-~~l~~l~~~g~tvi~vt----H~~~~~ 162 (171)
T 4gp7_A 92 IEMAKDYHC--FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK-KSIKGLQREGFRYVYIL----NSPEEV 162 (171)
T ss_dssp HHHHHHTTC--EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH-HHSTTHHHHTCSEEEEE----CSHHHH
T ss_pred HHHHHHcCC--cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh-hhhhhHHhcCCcEEEEe----CCHHHh
Confidence 899999999 999999999999 9999 557777 88888876799998775 665543
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3e-19 Score=164.59 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=88.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc-e-EEEeecCCCCCCCCC-CCc---------CCHHHhhh------------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-T-MHIVNLDPAAENFDY-PVA---------MDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G-~-i~i~~~d~~~~~~~~-~~~---------~~i~~~i~------------ 58 (236)
-+++|+||||||||||+|+|+|+++|++| + |+++| ++. +.+.| +++ .++++++-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~-~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~ 216 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQ-QPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLH 216 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTT-SCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Ccc-CCeeeeccchhhcccccccchhhhhcccccccCcchHH
Confidence 46899999999999999999999999999 8 99887 442 33333 222 23443220
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHH--HhcCCCCCE----EEEeC-CCc-ccHHhHHHHHHHHHHHHH
Q 026569 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEE--LDNYLDDDY----LVFDC-PGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~--l~~~~~p~~----lllDE-Pt~-LD~~~~~~~~~~ll~~l~ 127 (236)
+.++++.+|+..... ...++++++ +++|++ ++. +|++ +|+|| |++ ||+. ...+. +++++
T Consensus 217 ~~~~ll~~~gl~~~~~----~~~LSgGq~qrlalAra~rL~~--~p~i~~sGLlLDEpPts~LD~~-~~~l~-~l~~~-- 286 (460)
T 2npi_A 217 NKQPMVKNFGLERINE----NKDLYLECISQLGQVVGQRLHL--DPQVRRSGCIVDTPSISQLDEN-LAELH-HIIEK-- 286 (460)
T ss_dssp CBCCEECCCCSSSGGG----CHHHHHHHHHHHHHHHHHHHHH--CHHHHHSCEEEECCCGGGSCSS-CHHHH-HHHHH--
T ss_pred HHHHHHHHhCCCcccc----hhhhhHHHHHHHHHHHHHHhcc--CcccCcceEEEeCCcccccChh-HHHHH-HHHHH--
Confidence 223344455543321 234555544 899999 999 9999 99999 998 9998 43333 44443
Q ss_pred hCCCcEEEEEeccccccc------chhhHhhh
Q 026569 128 SRNFNVCAVYLLDSQFIT------DVTKFISG 153 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~------d~~~~~~~ 153 (236)
.+.++++|. |... ....+++.
T Consensus 287 -~~~tviiVt----h~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 287 -LNVNIMLVL----CSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp -TTCCEEEEE----CCSSCTHHHHHHHHHHHH
T ss_pred -hCCCEEEEE----ccCchhhhHHHHHHhccc
Confidence 367777664 4333 44566665
No 63
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.69 E-value=2.1e-18 Score=156.83 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=99.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCC----CCCCcCCHHHhh-------hHHHHHHHhCCCCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENF----DYPVAMDIRELI-------SLEDVMEELGLGPN 71 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~----~~~~~~~i~~~i-------~~~~~l~~~~l~~~ 71 (236)
.+++|+||||||||||+|+|+|+++|++|+|.++|.+...... +..+.++++|+. .++++++.+++...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 3799999999999999999999999999999998866432111 111223333322 37889999998754
Q ss_pred CchhhhHHhhhhc----HHHHHHHHHhcC--------CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-----hCC---
Q 026569 72 GGLIYCMEHLEDN----LDDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-----SRN--- 130 (236)
Q Consensus 72 ~~~~~~~~~~~~~----~s~~la~~l~~~--------~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~-----~~~--- 130 (236)
.... . ++.+ .++.+|+++... .+|+++++||||+ ||+..+.+++ ++++++. +.|
T Consensus 150 ~~~~--~--lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~-~~l~~l~~~~l~~~g~~~ 224 (413)
T 1tq4_A 150 DFFI--I--ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVL-QDIRLNCVNTFRENGIAE 224 (413)
T ss_dssp SEEE--E--EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHH-HHHHHHHHHHHHHTTCSS
T ss_pred CCeE--E--eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHH-HHHHHHHHHHHHhcCCCC
Confidence 3221 1 3332 338888888762 2688999999999 9999999998 8888874 333
Q ss_pred CcEEEEEecccccccc--hhhHhhhhHH
Q 026569 131 FNVCAVYLLDSQFITD--VTKFISGCMA 156 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d--~~~~~~~~l~ 156 (236)
.+++ ++++|...+ ...+++.+.-
T Consensus 225 ~~ii---liSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 225 PPIF---LLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp CCEE---ECCTTCTTSTTHHHHHHHHHH
T ss_pred CcEE---EEecCcCCccCHHHHHHHHHH
Confidence 2333 466787765 7777765543
No 64
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.69 E-value=1.1e-17 Score=135.53 Aligned_cols=131 Identities=11% Similarity=0.054 Sum_probs=75.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC-------CCCCCC-CCcCCHHHhhhHHHHHHHhCCCCCCchh
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PVAMDIRELISLEDVMEELGLGPNGGLI 75 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~-------~~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~~ 75 (236)
.++|+||||||||||+++|+|++. |.+.|.+.. ...++| +++.+..+.+ +..++..+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~-----~~~~~~~~~~~~~ 71 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI-----FSSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE-----EEETTCCCSSEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH-----HHhhcCCcccccc
Confidence 478999999999999999999985 444543321 122333 2222222221 1111221110000
Q ss_pred hhHHhhhhcHH--HHHHHH-----HhcCCCCCEEEEeC--CCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEeccccccc
Q 026569 76 YCMEHLEDNLD--DWLAEE-----LDNYLDDDYLVFDC--PGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 76 ~~~~~~~~~~s--~~la~~-----l~~~~~p~~lllDE--Pt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~ 145 (236)
.....++++++ +.+|++ ++. +|+++|+|| |++ +|+..+..+. +++++ .+.+++++ .|.+|...
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~--~p~llilDEigp~~~ld~~~~~~l~-~~l~~---~~~~~i~~-~H~~h~~~ 144 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKD--RRKVIIIDEIGKMELFSKKFRDLVR-QIMHD---PNVNVVAT-IPIRDVHP 144 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGGCHHHHHHHH-HHHTC---TTSEEEEE-CCSSCCSH
T ss_pred ccccCcCHHHHHHHHHHhhcccccccc--CCCEEEEeCCCCcccCCHHHHHHHH-HHHhc---CCCeEEEE-EccCCCch
Confidence 00123444443 888996 888 999999999 999 9999887666 55443 45556555 24456655
Q ss_pred chhhHh
Q 026569 146 DVTKFI 151 (236)
Q Consensus 146 d~~~~~ 151 (236)
....++
T Consensus 145 ~~~~i~ 150 (178)
T 1ye8_A 145 LVKEIR 150 (178)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.65 E-value=3.3e-17 Score=160.06 Aligned_cols=84 Identities=23% Similarity=0.146 Sum_probs=64.5
Q ss_pred HHHHHHHhCCCCCC-chhhhHHhhhhcHH--HHHHHHHhcCCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 026569 59 LEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (236)
Q Consensus 59 ~~~~l~~~~l~~~~-~~~~~~~~~~~~~s--~~la~~l~~~~~---p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (236)
+.++++.++|+... ... ...++++.+ +.||++|+. + |+++||||||+ ||+..+..++ ++++++++.|.
T Consensus 710 ~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~ 784 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQP--ATELSGGEAQRIKLATELRR--SGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDAGN 784 (842)
T ss_dssp HHHHHHHTTCTTSBTTCC--GGGCCHHHHHHHHHHHTTSS--CCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHcCCCcccccCC--cccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 45788889998632 121 245666654 899999988 7 69999999999 9999999999 99999988899
Q ss_pred cEEEEEecccccccchhhHhh
Q 026569 132 NVCAVYLLDSQFITDVTKFIS 152 (236)
Q Consensus 132 ~ii~v~l~d~~~~~d~~~~~~ 152 (236)
+|+++. |++... ..++
T Consensus 785 tVIvis----Hdl~~i-~~aD 800 (842)
T 2vf7_A 785 TVIAVE----HKMQVV-AASD 800 (842)
T ss_dssp EEEEEC----CCHHHH-TTCS
T ss_pred EEEEEc----CCHHHH-HhCC
Confidence 998774 776544 3444
No 66
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.62 E-value=1.2e-14 Score=123.01 Aligned_cols=224 Identities=22% Similarity=0.426 Sum_probs=142.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
..++++.|+.|+||||++..++..+. .+.++.+.+.|+.....++.+..++++..+.++++.. ++++++....+.+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRL 91 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecHHHH
Confidence 46889999999999999999998887 6678999999998766666555666676677777765 666665444332222
Q ss_pred hhcHHHHHHHHHhcCC-CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026569 82 EDNLDDWLAEELDNYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~-~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
.... .++...+.... +.+++|+|.|++.+......+.+.+.+.+ .. .++++++|+....++..+..........
T Consensus 92 ~~~~-~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~---~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~ 166 (262)
T 1yrb_A 92 MEKF-NEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL---PY-PLVVYISDPEILKKPNDYCFVRFFALLI 166 (262)
T ss_dssp HTTH-HHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTS---SS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHH---hh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence 2222 33333332110 45899999999977766544432333333 22 5566778887777777765444333333
Q ss_pred HHhhCCCeeeeccccccccchh--hhhhhcccChHHHHHHhhh-ccchhHHHHHHHHHHHHhhCCC-ceeEEeeccCCC
Q 026569 161 MVQLELPHVNILSKMDLVTNKK--EIEDYLNPESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES 235 (236)
Q Consensus 161 ~i~~~~p~i~vlsk~dll~~~~--~l~~~~~~~~~~l~~~l~~-~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 235 (236)
....+.|.+.|+||+|+..... .+..++. +...+.+.+.. +...+|.++ ++++++++++. ..|+|+...+.+
T Consensus 167 ~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SA~~~~ 242 (262)
T 1yrb_A 167 DLRLGATTIPALNKVDLLSEEEKERHRKYFE-DIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLSAKTRE 242 (262)
T ss_dssp HHHHTSCEEEEECCGGGCCHHHHHHHHHHHH-CHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECCTTTCT
T ss_pred hcccCCCeEEEEecccccccccHHHHHHHHh-ChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEEecCcc
Confidence 4456889999999999986431 1222221 23333333321 123456664 78888888876 488888776543
No 67
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.61 E-value=2.4e-16 Score=142.38 Aligned_cols=53 Identities=19% Similarity=0.024 Sum_probs=45.9
Q ss_pred hhhcHH--HHHHHHHhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 81 LEDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 81 ~~~~~s--~~la~~l~~~~~p--~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
+++|.+ +.||++++. +| ++|||||||+ ||+.+...+. ++++++. +|.+|++|.
T Consensus 296 lSgGe~qrl~lA~~l~~--~~~~~~LlLDEpt~~LD~~~~~~l~-~~L~~l~-~~~~vi~it 353 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLA-DTRQVLVVT 353 (415)
T ss_dssp SCHHHHHHHHHHHHHHH--CCSSSEEEESSTTTTCCHHHHHHHH-HHHHHHT-TTSEEEEEC
T ss_pred cCHhHHHHHHHHHHHHh--CCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHh-CCCEEEEEe
Confidence 355544 899999999 99 9999999999 9999999999 9999986 588888774
No 68
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.61 E-value=8.9e-16 Score=134.23 Aligned_cols=123 Identities=11% Similarity=0.124 Sum_probs=82.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------------CCCCC-CCcC-------CHHHhhhHH
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PVAM-------DIRELISLE 60 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~~-~~~~-------~i~~~i~~~ 60 (236)
+.+++++|||||||||+++.|+|+++|++|+|.+.|.|+.+ ..++| ++.. ++++.+...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 179 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999988632 13444 3322 244443321
Q ss_pred H-------HHHHhCCCCCCchhhhHHhhhhcHHHHHHHHHhcCCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHH-hC
Q 026569 61 D-------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SR 129 (236)
Q Consensus 61 ~-------~l~~~~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~--~lllDEPt~-LD~~~~~~~~~~ll~~l~-~~ 129 (236)
. +++.+|+.+... ..+..++ .+++.+|+++.. +|+ ++++| ||+ +|+..+. +++. +.
T Consensus 180 ~~~~~d~~lldt~gl~~~~~--~~~~eLS-kqr~~iaral~~--~P~e~lLvLD-ptsglD~~~~~-------~~~~~~~ 246 (302)
T 3b9q_A 180 KEEGYDVVLCDTSGRLHTNY--SLMEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVV 246 (302)
T ss_dssp HHTTCSEEEECCCCCSSCCH--HHHHHHH-HHHHHHHTTSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHT
T ss_pred HHcCCcchHHhcCCCCcchh--HHHHHHH-HHHHHHHHhhcc--CCCeeEEEEe-CCCCcCHHHHH-------HHHHHhc
Confidence 1 122233333221 1223344 334899999998 999 99999 999 9987552 3344 35
Q ss_pred CCcEEEEE
Q 026569 130 NFNVCAVY 137 (236)
Q Consensus 130 ~~~ii~v~ 137 (236)
|.++++++
T Consensus 247 g~t~iiiT 254 (302)
T 3b9q_A 247 GITGLILT 254 (302)
T ss_dssp CCCEEEEE
T ss_pred CCCEEEEe
Confidence 78877764
No 69
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.60 E-value=3.4e-15 Score=132.01 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=80.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
..++|+||||||||||+++|+|+++|++|.|.+.|.+. ...++ .++.+.+- .| + .
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e----~~~~~---~~~~i~~~-----~g----g---------g 226 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE----IVFKH---HKNYTQLF-----FG----G---------N 226 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC----CCCSS---CSSEEEEE-----CB----T---------T
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec----ccccc---chhEEEEE-----eC----C---------C
Confidence 46899999999999999999999999999999998541 11110 01110000 00 1 1
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026569 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
..++..|++++.. +|+++++|||++- ++. ++++.+.+.+.+++++. |..+ ....+++++....+
T Consensus 227 ~~~r~~la~aL~~--~p~ilildE~~~~------e~~-~~l~~~~~g~~tvi~t~----H~~~-~~~~~dri~~l~~g 290 (330)
T 2pt7_A 227 ITSADCLKSCLRM--RPDRIILGELRSS------EAY-DFYNVLCSGHKGTLTTL----HAGS-SEEAFIRLANMSSS 290 (330)
T ss_dssp BCHHHHHHHHTTS--CCSEEEECCCCST------HHH-HHHHHHHTTCCCEEEEE----ECSS-HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHhhh--CCCEEEEcCCChH------HHH-HHHHHHhcCCCEEEEEE----cccH-HHHHhhhheehhcC
Confidence 2244899999999 9999999999982 244 66777754344565553 5554 66677777665544
No 70
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.60 E-value=8.5e-16 Score=151.31 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=60.1
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCc
Q 026569 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p---~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (236)
..++++.+||+...... ....+++|.+ +.||++|+. +| +++||||||+ ||+.+...++ ++++++.++|.|
T Consensus 785 ~~~~L~~vGL~~~~lgq-~~~~LSGGErQRV~LAraL~~--~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~G~T 860 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQ-PATTLSGGEAQRIKLASELRK--RDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDRGNT 860 (916)
T ss_dssp HHHHHHHTTGGGSBTTC-CSTTCCHHHHHHHHHHHHHTS--CCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHHcCCchhhccC-CccCCCHHHHHHHHHHHHHhh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCE
Confidence 45677788886421111 1235666654 999999987 65 7999999999 9999999999 999999878999
Q ss_pred EEEEEeccccccc
Q 026569 133 VCAVYLLDSQFIT 145 (236)
Q Consensus 133 ii~v~l~d~~~~~ 145 (236)
||+|. |++.
T Consensus 861 VIvI~----HdL~ 869 (916)
T 3pih_A 861 VIVIE----HNLD 869 (916)
T ss_dssp EEEEC----CCHH
T ss_pred EEEEe----CCHH
Confidence 98774 7764
No 71
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.60 E-value=3.1e-15 Score=128.17 Aligned_cols=119 Identities=19% Similarity=0.152 Sum_probs=80.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ++... ..+. + ..+++.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~----~~~~~--~~v~--q--~~~gl~~----------- 84 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV----FKHKK--SIVN--Q--REVGEDT----------- 84 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----CCCSS--SEEE--E--EEBTTTB-----------
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee----cCCcc--eeee--H--HHhCCCH-----------
Confidence 478999999999999999999999998 99999998765310 11100 0000 0 1223322
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026569 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
..++++|++++.. +|+++++|||+ |+.+...+ ++.. +.|.+++++. |... ...++++++..
T Consensus 85 -~~l~~~la~aL~~--~p~illlDEp~--D~~~~~~~----l~~~-~~g~~vl~t~----H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 85 -KSFADALRAALRE--DPDVIFVGEMR--DLETVETA----LRAA-ETGHLVFGTL----HTNT-AIDTIHRIVDI 145 (261)
T ss_dssp -SCHHHHHHHHHHH--CCSEEEESCCC--SHHHHHHH----HHHH-HTTCEEEEEE----CCSS-HHHHHHHHHHT
T ss_pred -HHHHHHHHHHHhh--CCCEEEeCCCC--CHHHHHHH----HHHH-ccCCEEEEEe----Ccch-HHHHHHHHhhh
Confidence 2245899999999 99999999999 87775443 3333 4587876663 5533 55666665543
No 72
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.58 E-value=1.9e-15 Score=126.59 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=71.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHH--hCCcCCCceEEEeecCCCC------CCCCCC-Cc------CCHHHhhhHHHHH---H
Q 026569 3 YAQLVIGPAGSGKSTYCSSLY--RHCETVRRTMHIVNLDPAA------ENFDYP-VA------MDIRELISLEDVM---E 64 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~--g~l~~~~G~i~i~~~d~~~------~~~~~~-~~------~~i~~~i~~~~~l---~ 64 (236)
.+++|+||||||||||+++++ |...+.+|.+++.+.++.. ..+++. +. +++.+........ +
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEE 110 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccccccc
Confidence 578999999999999999999 6656777777777654421 123331 10 0111110000000 0
Q ss_pred Hh-CCCCCCchhhhHHhhhhcHHHHHHHHH-hcCCCCCEEEEeCCCc-cc-----HHhHHHHHHHHHHHHHhCCCcEEEE
Q 026569 65 EL-GLGPNGGLIYCMEHLEDNLDDWLAEEL-DNYLDDDYLVFDCPGQ-IE-----LFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 65 ~~-~l~~~~~~~~~~~~~~~~~s~~la~~l-~~~~~p~~lllDEPt~-LD-----~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
.. .+.+.. . ......+...+ .. +|+++++|||++ +| ...+..+. ++++.+++.|.+++++
T Consensus 111 ~~~~~~~~~-----~----~~~~~~~~~~l~~~--~p~~lilDep~~~ld~~~d~~~~~~~l~-~l~~~l~~~g~tii~v 178 (251)
T 2ehv_A 111 KFVLEDRFN-----V----DNFLRYIYRVVKAI--NAKRLVIDSIPSIALRLEEERKIREVLL-KLNTILLEMGVTTILT 178 (251)
T ss_dssp -------CC-----H----HHHHHHHHHHHHHT--TCSEEEEECHHHHHHHSSSGGGHHHHHH-HHHHHHHHHCCEEEEE
T ss_pred ceeccCccc-----H----HHHHHHHHHHHHhh--CCCEEEEccHHHHHhhcCCHHHHHHHHH-HHHHHHHHCCCeEEEE
Confidence 00 000000 0 11112222222 24 999999999998 86 55555566 9999998789999877
Q ss_pred Eecccccccch
Q 026569 137 YLLDSQFITDV 147 (236)
Q Consensus 137 ~l~d~~~~~d~ 147 (236)
+ |...+.
T Consensus 179 t----H~~~~~ 185 (251)
T 2ehv_A 179 T----EAPDPQ 185 (251)
T ss_dssp E----CCC---
T ss_pred E----CCCCCC
Confidence 5 555444
No 73
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.58 E-value=6.1e-16 Score=152.09 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=61.5
Q ss_pred HHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 026569 59 LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (236)
Q Consensus 59 ~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~---p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (236)
..++++.+||+. ..... ...+++|.+ +.||++|+. + |+++||||||+ ||+.++..++ ++++++++.|.
T Consensus 825 ~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~ 899 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQP--ATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGD 899 (972)
T ss_dssp HHHHHHHTTCSSSBTTCC--GGGCCHHHHHHHHHHHHHSS--CCCSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHcCCCcccccCc--hhhCCHHHHHHHHHHHHHhc--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 356788899976 22222 245666654 999999997 6 49999999999 9999999999 99999987898
Q ss_pred cEEEEEecccccccc
Q 026569 132 NVCAVYLLDSQFITD 146 (236)
Q Consensus 132 ~ii~v~l~d~~~~~d 146 (236)
+|+++. |++..
T Consensus 900 TVIvis----Hdl~~ 910 (972)
T 2r6f_A 900 TVLVIE----HNLDV 910 (972)
T ss_dssp EEEEEC----CCHHH
T ss_pred EEEEEc----CCHHH
Confidence 998774 76653
No 74
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.58 E-value=2.9e-16 Score=149.27 Aligned_cols=156 Identities=17% Similarity=0.118 Sum_probs=86.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeecCCC----------CCCCCC-CCc------CCHHHhhhHHHHHHHh
Q 026569 5 QLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA----------AENFDY-PVA------MDIRELISLEDVMEEL 66 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~l~~-~~G~i~i~~~d~~----------~~~~~~-~~~------~~i~~~i~~~~~l~~~ 66 (236)
++|+||||||||||+++|+|+..| ++|.|.+.|.++. ...++| +++ .++++++. .....+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~--~~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEIN--KAQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHH--HHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHH--HHHHHh
Confidence 799999999999999999999988 7999999887631 122344 232 23444432 222222
Q ss_pred CCCCCCchhhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCC------Cc-ccHHhHHHHHHHHHHHHHhCCCcEE-EEEe
Q 026569 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP------GQ-IELFTHVPVLRNFVDHLKSRNFNVC-AVYL 138 (236)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEP------t~-LD~~~~~~~~~~ll~~l~~~~~~ii-~v~l 138 (236)
+....+ .+... ..++.+... .|+++++||| |+ +|+..+..+. ++++++.+++.+++ ++.
T Consensus 126 ~~~~~~--------~s~~~-i~l~i~~~~--~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vv- 192 (608)
T 3szr_A 126 AGEGMG--------ISHEL-ITLEISSRD--VPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVV- 192 (608)
T ss_dssp HCSSSC--------CCSCC-EEEEEEESS--SCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEE-
T ss_pred cCCccc--------cchHH-HHHHhcCCC--CCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEE-
Confidence 221111 00000 111222234 7999999999 88 9999999988 99998654333332 222
Q ss_pred cccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccc
Q 026569 139 LDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180 (236)
Q Consensus 139 ~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~ 180 (236)
+|...-....+ +-.....-..+.+.+-|++|+|++.+
T Consensus 193 --t~~~d~a~~~~---l~la~~v~~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 193 --PSNVDIATTEA---LSMAQEVDPEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp --ESSSCTTTCHH---HHHHHHHCSSCCSEEEEEECGGGSSS
T ss_pred --eccchhccHHH---HHHHHHHhhcCCceEEEecchhhcCc
Confidence 24433222211 11222222346689999999999964
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.57 E-value=1.4e-14 Score=129.44 Aligned_cols=123 Identities=11% Similarity=0.124 Sum_probs=83.0
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------------CCCCC-CCcC-------CHHHhhhHH
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PVAM-------DIRELISLE 60 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~~-~~~~-------~i~~~i~~~ 60 (236)
+.+++|+|||||||||+++.|+|+++|++|+|.+.|.|+.+ ..++| ++.. ++++.+...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 36899999999999999999999999999999999988632 13444 3322 234443321
Q ss_pred H-------HHHHhCCCCCCchhhhHHhhhhcHHHHHHHHHhcCCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHH-hC
Q 026569 61 D-------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SR 129 (236)
Q Consensus 61 ~-------~l~~~~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~--~lllDEPt~-LD~~~~~~~~~~ll~~l~-~~ 129 (236)
. +++.+|+.+... ..+..++ .+++.+|+++.. +|+ +|++| ||+ +|+..+. +.+. +.
T Consensus 237 ~~~~~d~~lldt~Gl~~~~~--~~~~eLS-kqr~~iaral~~--~P~e~lLvLD-pttglD~~~~~-------~~~~~~~ 303 (359)
T 2og2_A 237 KEEGYDVVLCDTSGRLHTNY--SLMEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVV 303 (359)
T ss_dssp HHTTCSEEEEECCCCSSCCH--HHHHHHH-HHHHHHHHHSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHT
T ss_pred HhCCCHHHHHHhcCCChhhh--hHHHHHH-HHHHHHHHHHhc--CCCceEEEEc-CCCCCCHHHHH-------HHHHHhc
Confidence 1 122233433321 1233444 334899999999 999 99999 999 9987653 2344 35
Q ss_pred CCcEEEEE
Q 026569 130 NFNVCAVY 137 (236)
Q Consensus 130 ~~~ii~v~ 137 (236)
|.++++++
T Consensus 304 g~t~iiiT 311 (359)
T 2og2_A 304 GITGLILT 311 (359)
T ss_dssp CCCEEEEE
T ss_pred CCeEEEEe
Confidence 78877764
No 76
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.56 E-value=5.5e-17 Score=133.76 Aligned_cols=59 Identities=5% Similarity=-0.059 Sum_probs=47.5
Q ss_pred HHhcCCCCCEEEEeCCCc-c----cHHhHHHHHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHH
Q 026569 92 ELDNYLDDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 92 ~l~~~~~p~~lllDEPt~-L----D~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
+++. +|+++++|||++ + |+..+..+. ++++++++ .|.+++++. |.+.+...++++++++
T Consensus 137 ~l~~--~p~~~~LDep~~~l~~~~d~~~~~~l~-~~l~~l~~~~g~tvi~vt----Hdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 137 VFLA--PPSWQDLQARLIGRGTETADVIQRRLD-TARIELAAQGDFDKVVVN----RRLESACAELVSLLVG 201 (207)
T ss_dssp EEEE--CSCHHHHHHHHHTTSCSCHHHHHHHHH-HHHHHHHGGGGSSEEEEC----SSHHHHHHHHHHHHC-
T ss_pred EEEE--CCCHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhhccCcEEEEC----CCHHHHHHHHHHHHHh
Confidence 4556 899999999987 7 777888888 88999874 588988774 9999888888877663
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.55 E-value=4.8e-16 Score=133.89 Aligned_cols=122 Identities=15% Similarity=0.167 Sum_probs=61.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC----CCCCC-C------CcCCHHHhhhHHH---------
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-P------VAMDIRELISLED--------- 61 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----~~~~~-~------~~~~i~~~i~~~~--------- 61 (236)
.|.++|+||||||||||+++|+|+..|++|+|.+.|.++.. ..++| + +.+++.|++....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 37899999999999999999999999999999999876532 11222 1 2234444432110
Q ss_pred HHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026569 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 62 ~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
.+..+..... .....+.++++++ +.+||+++ .++++|||+. +++.. . ++++++++. .++++|
T Consensus 82 ~i~~~~~~~~--~~~~~~~LS~G~~qrv~iaRal~-----~lllldep~~gL~~lD----~-~~l~~L~~~-~~vI~V 146 (270)
T 3sop_A 82 PIEKYINEQY--EKFLKEEVNIARKKRIPDTRVHC-----CLYFISPTGHSLRPLD----L-EFMKHLSKV-VNIIPV 146 (270)
T ss_dssp HHHHHHHHHH--HHHHHHHSCTTCCSSCCCCSCCE-----EEEEECCCSSSCCHHH----H-HHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHH--HhhhHHhcCcccchhhhhheeee-----eeEEEecCCCcCCHHH----H-HHHHHHHhc-CcEEEE
Confidence 0000000000 0001112222221 45555543 3999999998 99876 2 666777655 666655
No 78
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.54 E-value=2.6e-15 Score=148.08 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=62.7
Q ss_pred HHHHHHhCCCCC-CchhhhHHhhhhcHH--HHHHHHHhcCCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCc
Q 026569 60 EDVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (236)
Q Consensus 60 ~~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p---~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (236)
.++++.+||+.. .... ...+++|.+ +.||++|+. +| +++||||||+ ||+..+..++ ++++++++.|.+
T Consensus 844 ~~~L~~lgL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~T 918 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQP--APTLSGGEAQRVKLASELQK--RSTGRTVYILDEPTTGLHFDDIRKLL-NVINGLVDKGNT 918 (993)
T ss_dssp HHHHHHTTGGGSBTTCC--GGGSCHHHHHHHHHHHHHSS--CCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHcCCCcccccCc--cccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE
Confidence 467788888752 2221 245666654 999999997 64 9999999999 9999999999 999999878989
Q ss_pred EEEEEecccccccchhhHhhh
Q 026569 133 VCAVYLLDSQFITDVTKFISG 153 (236)
Q Consensus 133 ii~v~l~d~~~~~d~~~~~~~ 153 (236)
|+++. |++... ..++.
T Consensus 919 VIvis----Hdl~~i-~~aDr 934 (993)
T 2ygr_A 919 VIVIE----HNLDVI-KTSDW 934 (993)
T ss_dssp EEEEC----CCHHHH-TTCSE
T ss_pred EEEEc----CCHHHH-HhCCE
Confidence 98774 665533 33443
No 79
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.52 E-value=6.5e-14 Score=123.05 Aligned_cols=57 Identities=9% Similarity=0.041 Sum_probs=44.5
Q ss_pred HhhhhcHH--HHHHHHHhc--CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 79 EHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 79 ~~~~~~~s--~~la~~l~~--~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
..++++++ ++||++++. ..+|+++||||||+ ||+..+..+. ++++++. .+.+++++.
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~-~~~~vi~~t 279 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENS-KHTQFIVIT 279 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHT-TTSEEEEEC
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCCeEEEEE
Confidence 34556554 888998862 11789999999999 9999999999 8899884 477777663
No 80
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.48 E-value=2.2e-14 Score=128.37 Aligned_cols=59 Identities=8% Similarity=-0.020 Sum_probs=49.7
Q ss_pred hhhhcHH--HHHHHHHh------cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEeccccccc
Q 026569 80 HLEDNLD--DWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 80 ~~~~~~s--~~la~~l~------~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~ 145 (236)
.+++|.+ ++||++++ . +|+++||||||+ ||+.++..++ ++++++++.|.+|++|. |.+.
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~--~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~g~tvi~it----H~~~ 346 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASG--RLDAFFIDEGFSSLDTENKEKIA-SVLKELERLNKVIVFIT----HDRE 346 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTT--TCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGSSSEEEEEE----SCHH
T ss_pred hCCHHHHHHHHHHHHHHhhhcccC--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEe----cchH
Confidence 4556554 88888888 6 999999999999 9999999999 99999987889998775 6654
No 81
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.48 E-value=6.1e-14 Score=125.22 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=73.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
-+++|+||||||||||+++++|+++++ +|.|...+ ++.... ....... + .+...+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~--~~~~~~~---v------~q~~~~~~---------- 181 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV--HESKKCL---V------NQREVHRD---------- 181 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC--CCCSSSE---E------EEEEBTTT----------
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh--hhccccc---e------eeeeeccc----------
Confidence 368999999999999999999999987 56665443 442211 1100000 0 00001111
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026569 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
...+..+|+++|.. +|+++++|||+ |..+ + +.+.++++.|.+++++. |..+.. ..+++++..
T Consensus 182 ~~~~~~~La~aL~~--~PdvillDEp~--d~e~----~-~~~~~~~~~G~~vl~t~----H~~~~~-~~~dRli~l 243 (356)
T 3jvv_A 182 TLGFSEALRSALRE--DPDIILVGEMR--DLET----I-RLALTAAETGHLVFGTL----HTTSAA-KTIDRVVDV 243 (356)
T ss_dssp BSCHHHHHHHHTTS--CCSEEEESCCC--SHHH----H-HHHHHHHHTTCEEEEEE----SCSSHH-HHHHHHHHT
T ss_pred cCCHHHHHHHHhhh--CcCEEecCCCC--CHHH----H-HHHHHHHhcCCEEEEEE----ccChHH-HHHHHHhhh
Confidence 01233688999999 99999999999 5444 3 33344456788876664 554433 667777665
No 82
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.47 E-value=3.9e-14 Score=117.03 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-------CCceEEEeecC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCET-------VRRTMHIVNLD 39 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-------~~G~i~i~~~d 39 (236)
.+++|+||||||||||++.|+|.+.+ ..|.+++.+.+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 57999999999999999999996555 34466666654
No 83
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.45 E-value=3e-13 Score=111.52 Aligned_cols=118 Identities=10% Similarity=0.124 Sum_probs=72.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCc---------
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGG--------- 73 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~--------- 73 (236)
.+++|+||||||||||++.+++...+.+|+|.+.+.+...+ + +.+.+..++......
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~ 89 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRD-----------S---IIRQAKQFNWDFEEYIEKKLIIID 89 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHH-----------H---HHHHHHHTTCCCGGGBTTTEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHH-----------H---HHHHHHHhcchHHHHhhCCEEEEe
Confidence 47899999999999999999998888889999887654211 0 001111111111000
Q ss_pred -------hhhhHHh-hhhcHH-HHHHHHHhcCCCCC--EEEEeCCCc-c--cHHhHHHHHHHHHHHHHh-CCCcEEEEE
Q 026569 74 -------LIYCMEH-LEDNLD-DWLAEELDNYLDDD--YLVFDCPGQ-I--ELFTHVPVLRNFVDHLKS-RNFNVCAVY 137 (236)
Q Consensus 74 -------~~~~~~~-~~~~~s-~~la~~l~~~~~p~--~lllDEPt~-L--D~~~~~~~~~~ll~~l~~-~~~~ii~v~ 137 (236)
..+..+. -.+.+. ...+..... +|+ ++++|||++ + |+.....++ +.++++++ .|.++++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDe~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~vi~~~ 165 (235)
T 2w0m_A 90 ALMKEKEDQWSLVNLTPEELVNKVIEAKQKL--GYGKARLVIDSVSALFLDKPAMARKIS-YYLKRVLNKWNFTIYATS 165 (235)
T ss_dssp CCC----CTTBCSSCCHHHHHHHHHHHHHHH--CSSCEEEEEETGGGGSSSCGGGHHHHH-HHHHHHHHHTTEEEEEEE
T ss_pred ccccccCceeeecCCCHHHHHHHHHHHHHhh--CCCceEEEEECchHhhcCCHHHHHHHH-HHHHHHHHhCCCeEEEEe
Confidence 0000000 001111 122222234 899 999999997 6 998888888 77777754 688887774
No 84
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.45 E-value=6.9e-13 Score=115.97 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=78.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-------------CCCCC-CCcC------CHHHhhhHHHH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PVAM------DIRELISLEDV 62 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~~-~~~~------~i~~~i~~~~~ 62 (236)
.+++|+|||||||||+++.|+|+++|++|+|.+.|.|+.. ..++| ++.. ++++.+.....
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~ 182 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 182 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999988632 13444 3322 23444332111
Q ss_pred -------HHHhCCCCCCchhhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh-CCCcEE
Q 026569 63 -------MEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVC 134 (236)
Q Consensus 63 -------l~~~~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~-~~~~ii 134 (236)
++..|..+.. ...++.++ .++..+||+++. +|+.+++ .||+.+...++ +.++.+.+ .+.+++
T Consensus 183 ~~~d~~llDt~G~~~~~--~~~~~eLs-~~r~~iaRal~~--~P~~~lL----vLDa~t~~~~~-~~~~~~~~~~~~t~i 252 (304)
T 1rj9_A 183 RGYDLLFVDTAGRLHTK--HNLMEELK-KVKRAIAKADPE--EPKEVWL----VLDAVTGQNGL-EQAKKFHEAVGLTGV 252 (304)
T ss_dssp HTCSEEEECCCCCCTTC--HHHHHHHH-HHHHHHHHHCTT--CCSEEEE----EEETTBCTHHH-HHHHHHHHHHCCSEE
T ss_pred CCCCEEEecCCCCCCch--HHHHHHHH-HHHHHHHHhhcC--CCCeEEE----EEcHHHHHHHH-HHHHHHHHHcCCcEE
Confidence 0111221111 11122333 234899999999 9994444 45555555556 55666654 478887
Q ss_pred EEE
Q 026569 135 AVY 137 (236)
Q Consensus 135 ~v~ 137 (236)
+++
T Consensus 253 ivT 255 (304)
T 1rj9_A 253 IVT 255 (304)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 85
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.44 E-value=5.3e-14 Score=139.02 Aligned_cols=126 Identities=13% Similarity=0.154 Sum_probs=76.4
Q ss_pred eeEEEEcCCCCcHHHHHHHH--------HhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCch
Q 026569 3 YAQLVIGPAGSGKSTYCSSL--------YRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l--------~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~ 74 (236)
-+++|+||||||||||+|.+ .|...|..+... + . +++++..+|+..+...
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~--~---------~-----------~d~i~~~ig~~d~l~~ 720 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV--S---------I-----------VDCILARVGAGDSQLK 720 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE--E---------C-----------CSEEEEECC-------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc--h---------H-----------HHHHHHhcCchhhHHH
Confidence 47899999999999999999 665555433210 0 0 0011112222221110
Q ss_pred hhhHHhhhhcHHHHHHHHH--hcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEecccccccchhhH
Q 026569 75 IYCMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKF 150 (236)
Q Consensus 75 ~~~~~~~~~~~s~~la~~l--~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~ 150 (236)
....++.++ ..+++++ +. +|+++||||||+ +|+.....+...+++.+.+ .|.++++++ |+ .+...+
T Consensus 721 --~lStf~~e~-~~~a~il~~a~--~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aT----H~-~el~~l 790 (934)
T 3thx_A 721 --GVSTFMAEM-LETASILRSAT--KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFAT----HF-HELTAL 790 (934)
T ss_dssp ----CHHHHHH-HHHHHHHHHCC--TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEE----SC-GGGGGG
T ss_pred --hHhhhHHHH-HHHHHHHHhcc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEc----Cc-HHHHHH
Confidence 012233444 6666666 66 999999999999 9999998885488899876 488887764 55 233445
Q ss_pred hhhhHHHHHH
Q 026569 151 ISGCMASLSA 160 (236)
Q Consensus 151 ~~~~l~~~~~ 160 (236)
++.+.....+
T Consensus 791 ad~~~~v~ng 800 (934)
T 3thx_A 791 ANQIPTVNNL 800 (934)
T ss_dssp GGTCTTEEEE
T ss_pred hcccceeEee
Confidence 5544443333
No 86
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.43 E-value=3.8e-13 Score=105.71 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=61.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G--~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
-.++|+||||||||||++++++.+.+ +| .+++.+.+....
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------------------- 78 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------------------- 78 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------------------
Confidence 36889999999999999999999877 46 555554332110
Q ss_pred hhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCc-EEEEE
Q 026569 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN-VCAVY 137 (236)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~-ii~v~ 137 (236)
++.. +|+++++|||+.++...+..+. ++++.+.+.|.+ +++++
T Consensus 79 -----------~~~~--~~~lLilDE~~~~~~~~~~~l~-~li~~~~~~g~~~iiits 122 (149)
T 2kjq_A 79 -----------DAAF--EAEYLAVDQVEKLGNEEQALLF-SIFNRFRNSGKGFLLLGS 122 (149)
T ss_dssp -----------GGGG--GCSEEEEESTTCCCSHHHHHHH-HHHHHHHHHTCCEEEEEE
T ss_pred -----------HHHh--CCCEEEEeCccccChHHHHHHH-HHHHHHHHcCCcEEEEEC
Confidence 1234 8999999999997766677777 899988776777 66554
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.41 E-value=1.2e-13 Score=128.89 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=78.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCce-EEEeecCCCCCCCCC--CCcCCHHHhhhHHHHHHHhCCCCCCchhhhHH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDY--PVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~-i~i~~~d~~~~~~~~--~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~ 79 (236)
.+++|+||||||||||++.++|...+.+++ +++.+.++..+-... ....+ ++++. ..|+...... .+ .
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~------~~~~~-~~g~~~~~~~-~p-~ 352 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD------FEEME-RQNLLKIVCA-YP-E 352 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCC------HHHHH-HTTSEEECCC-CG-G
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC------HHHHH-hCCCEEEEEe-cc-c
Confidence 578999999999999999999998886433 455554432100000 00011 22222 2222111000 01 1
Q ss_pred hhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHH-----hHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 80 HLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELF-----THVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 80 ~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~-----~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
.++.+ +++.+|+++.. +|+++|+| |++ ||.. .+..+. ++++.+++.|.+++++.
T Consensus 353 ~LS~g~~q~~~~a~~l~~--~p~llilD-p~~~Ld~~~~~~~~~~~i~-~ll~~l~~~g~tvilvs 414 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDF--KPARIAID-SLSALARGVSNNAFRQFVI-GVTGYAKQEEITGLFTN 414 (525)
T ss_dssp GSCHHHHHHHHHHHHHTT--CCSEEEEE-CHHHHTSSSCHHHHHHHHH-HHHHHHHHTTCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhh--CCCEEEEc-ChHHHHhhCChHHHHHHHH-HHHHHHHhCCCEEEEEE
Confidence 23333 23888888888 99999999 999 9999 888888 99999988898888774
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.39 E-value=4.9e-14 Score=131.63 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=87.7
Q ss_pred eeEEEEcCCCCcHHHHHHH--HHhCCcCCCceEEEeecCCCC------CCCCC-CCcCCHHHhhhHHHHHHHhCCCCCCc
Q 026569 3 YAQLVIGPAGSGKSTYCSS--LYRHCETVRRTMHIVNLDPAA------ENFDY-PVAMDIRELISLEDVMEELGLGPNGG 73 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~--l~g~l~~~~G~i~i~~~d~~~------~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~ 73 (236)
-+++|+||||||||||+++ ++|+++|.+|.|++.|.+... ..++| +|+....+++. .+...+...
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~------~~~~~~~~~ 113 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLF------ILDASPDPE 113 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEE------EEECCCCSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEE------EEecCcccc
Confidence 4789999999999999999 789999999999999877421 22333 11110000000 001000000
Q ss_pred hhhhHHh-hhhcHHHHHHHHHhcCCCCCEEEEeCCCc------ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccc
Q 026569 74 LIYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ------IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD 146 (236)
Q Consensus 74 ~~~~~~~-~~~~~s~~la~~l~~~~~p~~lllDEPt~------LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d 146 (236)
....++. -...+...+..++... +|+.+++|||++ +|+..+..++ ++++++++.|.+++++. |...+
T Consensus 114 ~~~~l~~~~l~~~~~~~~~~LS~g-~~~~lilDe~t~~~~~~~lD~~~~~~l~-~ll~~l~~~g~tvl~it----H~~~~ 187 (525)
T 1tf7_A 114 GQEVVGGFDLSALIERINYAIQKY-RARRVSIDSVTSVFQQYDASSVVRRELF-RLVARLKQIGATTVMTT----ERIEE 187 (525)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHH-TCSEEEEECSTTTSTTTCCHHHHHHHHH-HHHHHHHHHTCEEEEEE----ECSSS
T ss_pred hhhhhcccCHHHHHHHHHHHHHHc-CCCEEEECCHHHHHHhcCCHHHHHHHHH-HHHHHHHHCCCEEEEEe----cCCCC
Confidence 0000000 0011114455566422 899999999986 3788888888 99999987789988774 55544
Q ss_pred h---------hhHhhhhHHHHH
Q 026569 147 V---------TKFISGCMASLS 159 (236)
Q Consensus 147 ~---------~~~~~~~l~~~~ 159 (236)
. ..+++++++...
T Consensus 188 ~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 188 YGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp SSCSSTTSCHHHHCSEEEEEEE
T ss_pred ccccccccceeeeeeEEEEEEE
Confidence 2 233666665543
No 89
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.37 E-value=4.4e-14 Score=124.00 Aligned_cols=106 Identities=13% Similarity=-0.007 Sum_probs=67.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeecCCCC------CCCCCCCcCCHH---HhhhHHHHHHHhCCCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAA------ENFDYPVAMDIR---ELISLEDVMEELGLGP 70 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G--~i~i~~~d~~~------~~~~~~~~~~i~---~~i~~~~~l~~~~l~~ 70 (236)
+.+++|+||||||||||+++|+|+++|..| .|.+..+|..- ++..+....... +.-.+.++++.++ ..
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~ 168 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SG 168 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CC
Confidence 368999999999999999999999999876 46665555321 111111000000 0112566777776 32
Q ss_pred CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccH
Q 026569 71 NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (236)
Q Consensus 71 ~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~ 112 (236)
..... ...+++++. +.+|++++. +|+++|+|||+. +|.
T Consensus 169 ~~~~~--~~~lS~G~~qRv~~a~al~~--~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 169 SDYAC--APVYSHLHYDIIPGAEQVVR--HPDILILEGLNVLQTG 209 (312)
T ss_dssp CSCEE--EEEEETTTTEEEEEEEEEEC--SCSEEEEECTTTTCCC
T ss_pred cccCC--cccCChhhhhhhhhHHHhcc--CCCEEEECCccccCCc
Confidence 21111 123445543 667888888 999999999998 764
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.36 E-value=2.7e-13 Score=135.32 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=77.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~--~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
-+++|+||||||||||+|.+ |++.+. -|.. . |+. ...+++.+.+ +..+|+..+... ....
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~--V---pq~-----~~~l~v~d~I-----~~rig~~d~~~~--~~st 851 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCY--V---PAE-----VCRLTPIDRV-----FTRLGASDRIMS--GEST 851 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCC--E---ESS-----EEEECCCSBE-----EEECC-----------CH
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHHHhheeEE--e---ccC-----cCCCCHHHHH-----HHHcCCHHHHhh--chhh
Confidence 57999999999999999999 987642 1210 0 110 0012233222 112333222111 1123
Q ss_pred hhhcHH-HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHH-HHHHHHHHHHhC-CCcEEEEEecccccccchhhHhhhh
Q 026569 81 LEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP-VLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 81 ~~~~~s-~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~-~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++.+++ ++++++++. +|+++||||||+ +|+..... ++ .+++.+.+. |.+++++ +|+......+++..
T Consensus 852 f~~em~~~a~al~la~--~~sLlLLDEp~~Gtd~~dg~~~~~-~il~~L~~~~g~~vl~~----TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 852 FFVELSETASILMHAT--AHSLVLVDELGRGTATFDGTAIAN-AVVKELAETIKCRTLFS----THYHSLVEDYSQNV 922 (1022)
T ss_dssp HHHHHHHHHHHHHHCC--TTCEEEEECTTTTSCHHHHHHHHH-HHHHHHHHTSCCEEEEE----CCCHHHHHHTSSCS
T ss_pred hHHHHHHHHHHHHhCC--CCcEEEEECCCCCCChHHHHHHHH-HHHHHHHhcCCCEEEEE----eCCHHHHHHhCCcc
Confidence 444454 778888888 999999999999 99998655 55 899999865 8888766 37765555544433
No 91
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.36 E-value=4.4e-13 Score=115.87 Aligned_cols=127 Identities=11% Similarity=0.087 Sum_probs=70.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeecCCCCCC----C-CCCCcC--CHHHhhh------------HHHH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAEN----F-DYPVAM--DIRELIS------------LEDV 62 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G-~i~i~~~d~~~~~----~-~~~~~~--~i~~~i~------------~~~~ 62 (236)
-+++|+||||||||||++.++|.+.+.+| +|.+.+.+..... + .+.+.. ...+.+. ++++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 115 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL 115 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH
Confidence 47899999999999999999999999877 7877665432110 0 000111 1111111 1222
Q ss_pred HHHhCC--CCCCchhhhHHhhhhcHH-HHHHHHHhcCCCCCEEEEeCCCc-cc------H-HhHHHHHHHHHHHHHh-CC
Q 026569 63 MEELGL--GPNGGLIYCMEHLEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IE------L-FTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 63 l~~~~l--~~~~~~~~~~~~~~~~~s-~~la~~l~~~~~p~~lllDEPt~-LD------~-~~~~~~~~~ll~~l~~-~~ 130 (236)
++..++ ..... +.....+. ...++++.. +|+++|+|||+. ++ . .....++ +.++++++ .|
T Consensus 116 l~~~~l~i~~~~~-----~~~~~~l~~~~~a~~~~~--~p~llilDept~~~~~~~~~d~~~~~~~i~-~~L~~la~~~~ 187 (296)
T 1cr0_A 116 FGNDTFHLYDSFA-----EAETDRLLAKLAYMRSGL--GCDVIILDHISIVVSASGESDERKMIDNLM-TKLKGFAKSTG 187 (296)
T ss_dssp HSSSCEEEECCCC-----SCCHHHHHHHHHHHHHTT--CCSEEEEEEEC-----------CHHHHHHH-HHHHHHHHHHC
T ss_pred hccCCEEEECCCC-----CCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCCCCCCCHHHHHHHHH-HHHHHHHHHhC
Confidence 221122 11100 01111221 122555667 999999999998 43 3 4445666 77777765 48
Q ss_pred CcEEEEE
Q 026569 131 FNVCAVY 137 (236)
Q Consensus 131 ~~ii~v~ 137 (236)
.+|++++
T Consensus 188 ~~vi~vs 194 (296)
T 1cr0_A 188 VVLVVIC 194 (296)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 8888774
No 92
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.35 E-value=1.5e-12 Score=116.88 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=75.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeecCCCCCCCCCCCcCC-HHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMD-IRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-~G~i~i~~~d~~~~~~~~~~~~~-i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
-+++|+|||||||||++++|+|+++|+ +|+|.+.+.++. ..+..... +.+. .+|+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e---~~~~~~~~~v~Q~--------~~g~~~~--------- 196 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE---YVFKHKKSIVNQR--------EVGEDTK--------- 196 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC---SCCCCSSSEEEEE--------EBTTTBS---------
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh---hhhccCceEEEee--------ecCCCHH---------
Confidence 468999999999999999999999998 899988875432 11111100 0000 1232221
Q ss_pred hhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026569 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
.++..+++++.. +|+++++|||+ |..+.. ..++.. ..|.+++.+ +|. .++..++++++..
T Consensus 197 ---~~~~~l~~~L~~--~pd~illdE~~--d~e~~~----~~l~~~-~~g~~vi~t----~H~-~~~~~~~~rl~~l 256 (372)
T 2ewv_A 197 ---SFADALRAALRE--DPDVIFVGEMR--DLETVE----TALRAA-ETGHLVFGT----LHT-NTAIDTIHRIVDI 256 (372)
T ss_dssp ---CSHHHHHHHTTS--CCSEEEESCCC--SHHHHH----HHHHHH-TTTCEEEEC----CCC-CSHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhhh--CcCEEEECCCC--CHHHHH----HHHHHH-hcCCEEEEE----ECc-chHHHHHHHHHHh
Confidence 134788999998 99999999999 554432 334443 457776443 244 4466677666543
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.34 E-value=1.8e-12 Score=103.81 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=64.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCce-EEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~-i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
.+++|.||||||||||++++++.+.+..|. +.+. +..+.+ +.+...+.-+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~---------------~~~~~~--~~~~~~~~~~~~---------- 91 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF---------------DTKDLI--FRLKHLMDEGKD---------- 91 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE---------------EHHHHH--HHHHHHHHHTCC----------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE---------------EHHHHH--HHHHHHhcCchH----------
Confidence 468999999999999999999998766662 2221 122221 111111100000
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCC-c-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 82 EDNLDDWLAEELDNYLDDDYLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt-~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
. ..+ .... +|++|++|||+ . +|...+..+. +++++..++|.+++++.
T Consensus 92 -~---~~~--~~~~--~~~llilDE~~~~~~~~~~~~~l~-~ll~~~~~~~~~ii~ts 140 (180)
T 3ec2_A 92 -T---KFL--KTVL--NSPVLVLDDLGSERLSDWQRELIS-YIITYRYNNLKSTIITT 140 (180)
T ss_dssp -S---HHH--HHHH--TCSEEEEETCSSSCCCHHHHHHHH-HHHHHHHHTTCEEEEEC
T ss_pred -H---HHH--HHhc--CCCEEEEeCCCCCcCCHHHHHHHH-HHHHHHHHcCCCEEEEc
Confidence 0 111 1223 89999999998 3 9999888888 88888877788887664
No 94
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.34 E-value=4.5e-12 Score=112.09 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 87 ~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
+++|++++. +|+++||||||+ ||+..+..++ ++++++.+.|.+++++.
T Consensus 263 l~~a~~l~~--~p~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~vi~~s 311 (339)
T 3qkt_A 263 LAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILVS 311 (339)
T ss_dssp HHHHHHTTT--TTCEEEEECCCTTCCHHHHHHHH-HHHHHTGGGSSEEEEEE
T ss_pred HHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEE
Confidence 467777877 999999999999 9999999999 89998876677887764
No 95
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.32 E-value=1.5e-12 Score=128.42 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=64.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeecCCCCC-CCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAE-NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-~~G~i~i~~~d~~~~-~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
-+++|+||||||||||+|.++++... ..|. .-|+.. .++. +++++..+|+..+.... ...
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-----~vpa~~~~i~~-----------~d~i~~~ig~~d~l~~~--~st 735 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGS-----YVPAEEATIGI-----------VDGIFTRMGAADNIYKG--RST 735 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTC-----CBSSSEEEEEC-----------CSEEEEEC------------CC
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCc-----cccchhhhhhH-----------HHHHHHhCChHHHHHHh--HHH
Confidence 47899999999999999999764211 1110 001100 0000 00011112222111100 112
Q ss_pred hhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEE
Q 026569 81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVY 137 (236)
Q Consensus 81 ~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~ 137 (236)
++.++. ..++++ +. +|+++||||||+ +|+.....+...+++.+.+ .|.++++++
T Consensus 736 fs~em~~~~~il~~-a~--~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vT 793 (918)
T 3thx_B 736 FMEELTDTAEIIRK-AT--SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVT 793 (918)
T ss_dssp HHHHHHHHHHHHHH-CC--TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred hhHHHHHHHHHHHh-cc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 333332 344444 56 999999999999 9999998887688888865 588887774
No 96
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.31 E-value=1.2e-13 Score=112.77 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=32.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
-+++|+||||||||||++.|+|+++ ++| |.++|.+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 3689999999999999999999999 889 98888665
No 97
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.30 E-value=5e-12 Score=112.42 Aligned_cols=121 Identities=16% Similarity=0.109 Sum_probs=68.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC--cCCC----ce-EEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCC---
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVR----RT-MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG--- 72 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l--~~~~----G~-i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~--- 72 (236)
.+++|+||||||||||++.+++.. +|+. |+ +++++.+... ++. +..+.+.+++.+..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~-----------~~~--i~~i~q~~~~~~~~v~~ 198 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----------PER--IREIAQNRGLDPDEVLK 198 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC-----------HHH--HHHHHHTTTCCHHHHGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC-----------HHH--HHHHHHHcCCCHHHHhh
Confidence 578999999999999999999988 5555 67 7777755310 010 11122222221100
Q ss_pred chhhhHHhhhhcH--HHHHHHHHhcC-----CCCCEEEEeCCCc-ccHHh------------HHHHHHHHHHHHHh-CCC
Q 026569 73 GLIYCMEHLEDNL--DDWLAEELDNY-----LDDDYLVFDCPGQ-IELFT------------HVPVLRNFVDHLKS-RNF 131 (236)
Q Consensus 73 ~~~~~~~~~~~~~--s~~la~~l~~~-----~~p~~lllDEPt~-LD~~~------------~~~~~~~ll~~l~~-~~~ 131 (236)
...+.....+.++ .+.++++++.. .+|+++|+|||++ +|+.. ...++ ..++++.+ .|.
T Consensus 199 ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l-~~L~~la~~~~~ 277 (349)
T 1pzn_A 199 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHL-ADLHRLANLYDI 277 (349)
T ss_dssp GEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred CEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHH-HHHHHHHHHcCc
Confidence 0000000000111 14455566521 2899999999999 98852 23444 44455543 588
Q ss_pred cEEEEE
Q 026569 132 NVCAVY 137 (236)
Q Consensus 132 ~ii~v~ 137 (236)
++++++
T Consensus 278 tvii~~ 283 (349)
T 1pzn_A 278 AVFVTN 283 (349)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 888775
No 98
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.29 E-value=8e-14 Score=115.95 Aligned_cols=135 Identities=14% Similarity=0.145 Sum_probs=78.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC--------CCCCC-CCcCCHH-H---------------h-
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PVAMDIR-E---------------L- 56 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~~~~i~-~---------------~- 56 (236)
.+++|+||||||||||+++|+|++ | |+|.+ |.+... ..++| +++.... . +
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF 99 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence 578999999999999999999998 5 99998 655321 23344 2211110 0 0
Q ss_pred -----hhHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHH-----HHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026569 57 -----ISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWL-----AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 57 -----i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~l-----a~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
-.++++++..... ... ..++++++ +++ +++++. +|++++||||++ +|..+...+. +.+
T Consensus 100 ~g~~~~~i~~~l~~~~~~-----il~-~~lsggq~qR~~i~~~~~~~~ll~--~~~~~~Lde~~~~~d~~~~~~i~-~~l 170 (218)
T 1z6g_A 100 YGTLKSEYDKAKEQNKIC-----LFE-MNINGVKQLKKSTHIKNALYIFIK--PPSTDVLLSRLLTRNTENQEQIQ-KRM 170 (218)
T ss_dssp EEEEHHHHHHHHHTTCEE-----EEE-ECHHHHHHHTTCSSCCSCEEEEEE--CSCHHHHHHHHHHTCCCCHHHHH-HHH
T ss_pred CCCcHHHHHHHHhCCCcE-----EEE-ecHHHHHHHHHHhcCCCcEEEEEe--CcCHHHHHHHHHhcCCCCHHHHH-HHH
Confidence 0134444432211 000 01233333 555 556666 899999999998 9998877777 555
Q ss_pred HHHHh-------CCCcEEEEEecccccccchhhHhhhh
Q 026569 124 DHLKS-------RNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 124 ~~l~~-------~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
.+..+ .+...+++. +...+....+..+
T Consensus 171 ~~~~~~~~~~h~~~~d~iiv~----~~~~ea~~~~~~i 204 (218)
T 1z6g_A 171 EQLNIELHEANLLNFNLSIIN----DDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHHHHHHHTTSCCSEEEEC----SSHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCEEEEC----CCHHHHHHHHHHH
Confidence 54422 345555443 4444444444333
No 99
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.27 E-value=4.2e-12 Score=108.95 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=73.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-CCCCC-CCcCCHHH---h----------hhHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-ENFDY-PVAMDIRE---L----------ISLEDVMEELG 67 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-~~~~~-~~~~~i~~---~----------i~~~~~l~~~~ 67 (236)
.+++|+||||||||||++.+++.+.. |.+. .|.++.. ..+.| ....+..+ . ....++++.+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~-~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~ 107 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG--GPDL-LEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLL 107 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT--CCCT-TCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc-CCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceE
Confidence 47899999999999999999986653 3221 1222110 11111 00001100 0 01334566666
Q ss_pred CCCCCchhhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCc---ccHHhH---HHHHHHHHHHHH-hCCCcEEEEE
Q 026569 68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ---IELFTH---VPVLRNFVDHLK-SRNFNVCAVY 137 (236)
Q Consensus 68 l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~---LD~~~~---~~~~~~ll~~l~-~~~~~ii~v~ 137 (236)
+.+..... ...++.+. ...+++++. +|+++++|||++ +|.... ..++ +.++++. +.|.++++++
T Consensus 108 l~~~~~~~--~~~ls~g~-~~~i~~l~~--~~~livlDe~~~~~~~d~~~~~~~~~~~-~~L~~l~~~~g~tvi~i~ 178 (279)
T 1nlf_A 108 IQPLIGSL--PNIMAPEW-FDGLKRAAE--GRRLMVLDTLRRFHIEEENASGPMAQVI-GRMEAIAADTGCSIVFLH 178 (279)
T ss_dssp ECCCTTSC--CCTTSHHH-HHHHHHHHT--TCSEEEEECGGGGCCSCTTCHHHHHHHH-HHHHHHHHHHCCEEEEEE
T ss_pred EeecCCCC--cccCCHHH-HHHHHHhcC--CCCEEEECCHHHhcCCCcCchHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence 65432111 12233444 556678888 999999999997 565433 6666 6677765 4688888875
No 100
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.26 E-value=7.2e-12 Score=110.63 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=76.0
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC-----------CCCC--C-CCc------CCHHHhhhHHH
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFD--Y-PVA------MDIRELISLED 61 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~--~-~~~------~~i~~~i~~~~ 61 (236)
+.+++++|||||||||+++.|+|+++|++|+|.+.+.|+.+ +..+ + ++. .++++++....
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999998742 1112 2 221 22444432111
Q ss_pred HHHHhC---CCCCCchhhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh-CCCcEEEEE
Q 026569 62 VMEELG---LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVY 137 (236)
Q Consensus 62 ~l~~~~---l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~-~~~~ii~v~ 137 (236)
. .... ++..+... ....+...+ ..+++++.. ++.++++|.+++. .++ +.++.+.+ .+.+.++++
T Consensus 209 ~-~~~d~vliDtaG~~~-~~~~l~~eL-~~i~ral~~--de~llvLDa~t~~------~~~-~~~~~~~~~~~it~iilT 276 (328)
T 3e70_C 209 A-RGIDVVLIDTAGRSE-TNRNLMDEM-KKIARVTKP--NLVIFVGDALAGN------AIV-EQARQFNEAVKIDGIILT 276 (328)
T ss_dssp H-HTCSEEEEEECCSCC-TTTCHHHHH-HHHHHHHCC--SEEEEEEEGGGTT------HHH-HHHHHHHHHSCCCEEEEE
T ss_pred h-ccchhhHHhhccchh-HHHHHHHHH-HHHHHHhcC--CCCEEEEecHHHH------HHH-HHHHHHHHhcCCCEEEEe
Confidence 0 1111 01011000 001233334 457788877 7778888866653 444 45555653 588887776
Q ss_pred eccc
Q 026569 138 LLDS 141 (236)
Q Consensus 138 l~d~ 141 (236)
-+|.
T Consensus 277 KlD~ 280 (328)
T 3e70_C 277 KLDA 280 (328)
T ss_dssp CGGG
T ss_pred CcCC
Confidence 4443
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.26 E-value=2.9e-12 Score=124.40 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=65.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEeecCCC-CCCCCCC----CcCCHHHhhhHHHHHHHhCCCCCCchhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPA-AENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIY 76 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-~~~G~i~i~~~d~~-~~~~~~~----~~~~i~~~i~~~~~l~~~~l~~~~~~~~ 76 (236)
-+++|+||||||||||+|+++|+.. +..|.+. |+ ...+++. ..+++.+++.. ++ .
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa~~~~i~~v~~i~~~~~~~d~l~~-------g~--S----- 637 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PAEEAHLPLFDGIYTRIGASDDLAG-------GK--S----- 637 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SSSEEEECCCSEEEEECCC-------------CC--S-----
T ss_pred cEEEEECCCCCChHHHHHHHHhhhhhcccCcee-----ehhccceeeHHHhhccCCHHHHHHh-------cc--c-----
Confidence 4689999999999999999999864 6777642 22 1223331 12233332210 11 1
Q ss_pred hHHhhhhcHHHHHHHHH--hcCCCCCEEEEeCC---Cc-ccHHhHH-HHHHHHHHHHHhCCCcEEEEE
Q 026569 77 CMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHV-PVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 77 ~~~~~~~~~s~~la~~l--~~~~~p~~lllDEP---t~-LD~~~~~-~~~~~ll~~l~~~~~~ii~v~ 137 (236)
.....+ ..+++++ +. +|+++|+||| |+ +|..+.. .++ +.+.+ .|.++++++
T Consensus 638 ---~~~~e~-~~la~il~~a~--~p~LlLLDEpgrGTs~lD~~~~~~~i~-~~L~~---~g~~vl~~T 695 (765)
T 1ewq_A 638 ---TFMVEM-EEVALILKEAT--ENSLVLLDEVGRGTSSLDGVAIATAVA-EALHE---RRAYTLFAT 695 (765)
T ss_dssp ---HHHHHH-HHHHHHHHHCC--TTEEEEEESTTTTSCHHHHHHHHHHHH-HHHHH---HTCEEEEEC
T ss_pred ---HHHHHH-HHHHHHHHhcc--CCCEEEEECCCCCCCCcCHHHHHHHHH-HHHHh---CCCEEEEEe
Confidence 111222 6677777 67 9999999999 88 9998763 444 44443 477776663
No 102
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.20 E-value=5.2e-12 Score=115.60 Aligned_cols=150 Identities=9% Similarity=-0.008 Sum_probs=93.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecC---CCC------------CCCCC-CC-cCCHHHhhhHHH----
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---PAA------------ENFDY-PV-AMDIRELISLED---- 61 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d---~~~------------~~~~~-~~-~~~i~~~i~~~~---- 61 (236)
-.++|+||||||||||+++|+|+.+|+.|.|.++|.+ ... ..+.| +| +.......++.+
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999973 211 11233 23 233333333222
Q ss_pred HHHHhCC-CCCC-chhhhHHhhhhcHH-HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh---C-CC-c
Q 026569 62 VMEELGL-GPNG-GLIYCMEHLEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS---R-NF-N 132 (236)
Q Consensus 62 ~l~~~~l-~~~~-~~~~~~~~~~~~~s-~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~---~-~~-~ 132 (236)
..+.++- +..- ........++++++ +++| +. +|++ ++ +|+.++..+. ++++++.+ . |. |
T Consensus 238 ~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~--~p~~------t~glD~~~~~~l~-~ll~r~~~~~~~~GsiT 305 (438)
T 2dpy_A 238 IAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IG--EPPA------TKGYPPSVFAKLP-ALVERAGNGIHGGGSIT 305 (438)
T ss_dssp HHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TT--CCCC------SSSCCTTHHHHHH-HHHTTCSCCSTTSCEEE
T ss_pred HHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hC--CCcc------cccCCHHHHHHHH-HHHHHHHhccCCCCccc
Confidence 1122221 1110 01112344555552 4444 55 8877 77 9999999999 88888755 2 42 3
Q ss_pred EEEEEecccccccchhhHhhhhHHHHHHHHhhCC
Q 026569 133 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (236)
Q Consensus 133 ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~ 166 (236)
.+.+.++.+|++. ..+++.++....+.+.++.
T Consensus 306 ~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 306 AFYTVLTEGDDQQ--DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp EEEEEECSSSCSC--CHHHHHHHHHSSEEEEECH
T ss_pred ceeEEEEeCCCcc--chhhceEEEEeCcEEEEeC
Confidence 3334456778887 5677888777777665543
No 103
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.19 E-value=1.3e-11 Score=120.53 Aligned_cols=110 Identities=13% Similarity=0.095 Sum_probs=63.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEeecCCCC-CCCCCC----CcCCHHHhhhHHHHHHHhCCCCCCchhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA-ENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIY 76 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-~~~G~i~i~~~d~~~-~~~~~~----~~~~i~~~i~~~~~l~~~~l~~~~~~~~ 76 (236)
-+++|+||||||||||+|+++|+.. ...|.. -|+. ..+++. ..+++.+.+. .++.
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-----vpa~~~~i~~~~~i~~~~~~~d~l~-------~~~s------- 668 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSY-----VPAQKVEIGPIDRIFTRVGAADDLA-------SGRS------- 668 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-----BSSSEEEECCCCEEEEEEC------------------------
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-----cchhcccceeHHHHHhhCCHHHHHH-------hhhh-------
Confidence 4789999999999999999999742 223311 1111 112221 1122222211 0111
Q ss_pred hHHhhhhcHHHHHHHH--HhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEE
Q 026569 77 CMEHLEDNLDDWLAEE--LDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVY 137 (236)
Q Consensus 77 ~~~~~~~~~s~~la~~--l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~ 137 (236)
.++.++ ..++.+ .+. +|+++|+||||+ +|+.....+...+++.+.+ .|.++++++
T Consensus 669 ---tf~~e~-~~~~~il~~a~--~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~T 727 (800)
T 1wb9_A 669 ---TFMVEM-TETANILHNAT--EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFAT 727 (800)
T ss_dssp ----CHHHH-HHHHHHHHHCC--TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ---hhhHHH-HHHHHHHHhcc--CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 122223 223333 355 999999999988 8887777763388999887 488887663
No 104
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.18 E-value=2.1e-11 Score=108.35 Aligned_cols=150 Identities=11% Similarity=0.077 Sum_probs=91.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC--CCCC------------C-CC-cCCHHHhhhH----HHH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFD------------Y-PV-AMDIRELISL----EDV 62 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~------------~-~~-~~~i~~~i~~----~~~ 62 (236)
.+++|+||||||||||+++|+|+.+|+.|.+.+.|.+... +.+. + .+ +....+.+.. ..+
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ 151 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTI 151 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999998865311 0000 1 00 1112222111 111
Q ss_pred HHHh-CCCCCCc-hhhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh--CC-CcEEEE
Q 026569 63 MEEL-GLGPNGG-LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS--RN-FNVCAV 136 (236)
Q Consensus 63 l~~~-~l~~~~~-~~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~--~~-~~ii~v 136 (236)
.+.+ ..+.+-. .......++.++ ..++.+ +. +|++ +. +|+..+..+. ++++++.+ .| .|.+.+
T Consensus 152 ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-l~--~p~~------t~Gldp~~~~~l~-~ller~~~~~~GsiT~~~t 220 (347)
T 2obl_A 152 AEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-SG--EPDV------RGGFPPSVFSSLP-KLLERAGPAPKGSITAIYT 220 (347)
T ss_dssp HHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-TT--CCCC------BTTBCHHHHHHHH-HHHTTCEECSSSEEEEEEE
T ss_pred HHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-cC--CCCc------ccCCCHHHHHHHH-HHHHHHhCCCCCCeeeEEE
Confidence 1111 1111100 001234455555 333333 34 7766 67 9999999999 99998864 35 344444
Q ss_pred EecccccccchhhHhhhhHHHHHHHHhhC
Q 026569 137 YLLDSQFITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 137 ~l~d~~~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
.++.+|++. ..+++.+.....+.+.++
T Consensus 221 Vl~~thdl~--~~i~d~v~~i~dG~Ivl~ 247 (347)
T 2obl_A 221 VLLESDNVN--DPIGDEVRSILDGHIVLT 247 (347)
T ss_dssp EECCSSCCC--CHHHHHHHHHCSEEEEBC
T ss_pred EEEeCCCCC--ChhhhheEEeeCcEEEEe
Confidence 567789888 567888888877777654
No 105
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.17 E-value=6.8e-13 Score=108.80 Aligned_cols=122 Identities=11% Similarity=0.064 Sum_probs=73.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHh-------------hhHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-------------ISLEDVMEELGL 68 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~-------------i~~~~~l~~~~l 68 (236)
+.+++|+||||||||||++.|+|++.| .+.+...|+...... ..++++. -.+.+.++.+++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLG---HLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCT---TSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcc---cccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 368999999999999999999999876 566666554221111 1122111 115566677766
Q ss_pred CCCCchhhhHHhhhhc------HHHHHHHHHhcCCCCCEEEEeCCCc--------ccHHhHHHHHHHHHHHH-HhCCCcE
Q 026569 69 GPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ--------IELFTHVPVLRNFVDHL-KSRNFNV 133 (236)
Q Consensus 69 ~~~~~~~~~~~~~~~~------~s~~la~~l~~~~~p~~lllDEPt~--------LD~~~~~~~~~~ll~~l-~~~~~~i 133 (236)
+...... .. .++.+ .++.++++++. +|.++++|||++ ||......+. +.+++. ++.|.++
T Consensus 80 ~~~~~~~-~~-~~s~g~~~~~~~~~~~~~~li~--~~~ll~~de~~~~~~d~~i~ld~~~~~~~~-r~l~r~~~~~g~t~ 154 (211)
T 3asz_A 80 GLPVEMP-VY-DFRAYTRSPRRTPVRPAPVVIL--EGILVLYPKELRDLMDLKVFVDADADERFI-RRLKRDVLERGRSL 154 (211)
T ss_dssp TCCEEEC-CE-ETTTTEECSSCEEECCCSEEEE--ESTTTTSSHHHHTTCSEEEEEECCHHHHHH-HHHHHHHHHSCCCH
T ss_pred CCCcCCC-cc-cCcccCCCCCeEEeCCCcEEEE--eehhhccCHHHHHhcCEEEEEeCCHHHHHH-HHHHHHHHHhCCCH
Confidence 5432111 00 11111 01345666777 888888899975 6888888888 555554 4567766
Q ss_pred E
Q 026569 134 C 134 (236)
Q Consensus 134 i 134 (236)
+
T Consensus 155 ~ 155 (211)
T 3asz_A 155 E 155 (211)
T ss_dssp H
T ss_pred H
Confidence 4
No 106
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.16 E-value=4.9e-12 Score=105.54 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=67.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC--CCceEEEeecCCCC---CCCCC-CCcCCHHHhhhHH-HHHHHhCCCCCCchh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA---ENFDY-PVAMDIRELISLE-DVMEELGLGPNGGLI 75 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~--~~G~i~i~~~d~~~---~~~~~-~~~~~i~~~i~~~-~~l~~~~l~~~~~~~ 75 (236)
-+++|+||||||||||+++|+|.++| ..|.|.+.+.++.. ..+.| +++....+...+. +.++...+..+ .
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~---~ 93 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGN---Y 93 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE---E
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhc---c
Confidence 57899999999999999999999986 68999998877643 23555 3321111111110 00111111100 0
Q ss_pred hhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026569 76 YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 76 ~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
..... .. +..++. .++++||| ||+.+...+. +.+. .+.+|+++
T Consensus 94 -----yg~~~-~~-v~~~l~--~G~illLD----LD~~~~~~i~-~~l~----~~~tI~i~ 136 (219)
T 1s96_A 94 -----YGTSR-EA-IEQVLA--TGVDVFLD----IDWQGAQQIR-QKMP----HARSIFIL 136 (219)
T ss_dssp -----EEEEH-HH-HHHHHT--TTCEEEEE----CCHHHHHHHH-HHCT----TCEEEEEE
T ss_pred -----CCCCH-HH-HHHHHh--cCCeEEEE----ECHHHHHHHH-HHcc----CCEEEEEE
Confidence 00011 22 233445 78999999 9999998877 5443 46666655
No 107
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.16 E-value=1.3e-10 Score=96.60 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=30.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh--CCcC-----CCceEEEeecC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR--HCET-----VRRTMHIVNLD 39 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g--~l~~-----~~G~i~i~~~d 39 (236)
.+++|+||||||||||++.+++ ..++ ..|.+++.+.+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5789999999999999999999 5554 56677777654
No 108
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.15 E-value=2.3e-11 Score=108.41 Aligned_cols=129 Identities=9% Similarity=0.016 Sum_probs=69.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCC----ceEEEeecCCCCCCCCCCCcCCHHHhhhH-H-H-HH---H---HhCCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR----RTMHIVNLDPAAENFDYPVAMDIRELISL-E-D-VM---E---ELGLG 69 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~----G~i~i~~~d~~~~~~~~~~~~~i~~~i~~-~-~-~l---~---~~~l~ 69 (236)
-.++|+||||||||||+++|+|+++|+. |++++.+..... ...+.. .+. +.+.. . + .. . .+.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~-~~~~~~-~~~-~~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD-EQAMQY-SDY-PQMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC-TTSSCT-TTH-HHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC-cccCCh-hHH-HHHHHHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999999 888774321111 111111 112 11210 0 0 00 0 01111
Q ss_pred CCCchh-hhHHhhhh-cHHHHHHHHHh-cCCCCCEEEEeC---CC------c-ccHHhHHHHHHHHHHHHHh-CCCcEEE
Q 026569 70 PNGGLI-YCMEHLED-NLDDWLAEELD-NYLDDDYLVFDC---PG------Q-IELFTHVPVLRNFVDHLKS-RNFNVCA 135 (236)
Q Consensus 70 ~~~~~~-~~~~~~~~-~~s~~la~~l~-~~~~p~~lllDE---Pt------~-LD~~~~~~~~~~ll~~l~~-~~~~ii~ 135 (236)
...... .......+ .....++++.. . +|+++++|| |+ . +|...+..+. +.++++.+ .+.++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~-~~l~~l~~~~~~~ili 324 (365)
T 1lw7_A 248 DTDFITTQAFCIQYEGKAHPFLDSMIKEY--PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ-QLLKKLLDKYKVPYIE 324 (365)
T ss_dssp SSCHHHHHHHHHHHHSCCCHHHHHHHHHS--CCSEEEEEECCCC-----------CCSHHHHH-HHHHHHHHGGGCCCEE
T ss_pred eCCchHHHHHHHHHcCCCCHHHHHHHhhc--CCCEEEECCCCCCcccCCCcCCccHHHHHHHH-HHHHHHHHHcCCCEEE
Confidence 100000 00001111 11155555553 5 899999999 63 4 8888898888 77766643 4778876
Q ss_pred EE
Q 026569 136 VY 137 (236)
Q Consensus 136 v~ 137 (236)
+.
T Consensus 325 ld 326 (365)
T 1lw7_A 325 IE 326 (365)
T ss_dssp EE
T ss_pred eC
Confidence 63
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.14 E-value=1.7e-10 Score=94.46 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=63.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHh-----hhHHHHHHHhCCCCCCchhhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-----ISLEDVMEELGLGPNGGLIYC 77 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~-----i~~~~~l~~~~l~~~~~~~~~ 77 (236)
.+++|+||||||||||++.+++ . .++.+.+...+.. +.+ ..+.+. +..+++++.+.+.....
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 87 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVDTEGG-----FSP-ERLVQMAETRGLNPEEALSRFILFTPSD---- 87 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEESSCC-----CCH-HHHHHHHHTTTCCHHHHHHHEEEECCTT----
T ss_pred EEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEECCCC-----CCH-HHHHHHHHhcCCChHHHhhcEEEEecCC----
Confidence 5789999999999999999999 3 3445555433220 000 001110 00122222222111100
Q ss_pred HHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhH--------HHHHHHHHHHHHh-CCCcEEEEE
Q 026569 78 MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH--------VPVLRNFVDHLKS-RNFNVCAVY 137 (236)
Q Consensus 78 ~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~--------~~~~~~ll~~l~~-~~~~ii~v~ 137 (236)
.+.. ... ...+++++.. +|+++++|||++ +|.... ..++ +.++++.+ .+.++++++
T Consensus 88 ~~~~-~~~-~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~-~~L~~l~~~~~~~vi~~~ 153 (220)
T 2cvh_A 88 FKEQ-RRV-IGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQL-QVLLWIARKHNIPVIVIN 153 (220)
T ss_dssp TSHH-HHH-HHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHH-HHHHHHHHHHTCCEEEEE
T ss_pred HHHH-HHH-HHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence 0000 011 4556677761 399999999999 887432 2233 33566554 488887774
No 110
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.08 E-value=1.4e-11 Score=103.74 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=33.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHH---hCCcCCCceEEEeecC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMHIVNLD 39 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~---g~l~~~~G~i~i~~~d 39 (236)
.+++|+|||||||||+++.|+ |+..++.|++.+.+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 578999999999999999999 9999999999887654
No 111
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=2.3e-10 Score=100.54 Aligned_cols=117 Identities=14% Similarity=0.228 Sum_probs=60.4
Q ss_pred EEEEcCCCCcHHHHHHHHHh-CCcCCCceEEEeecCCCC-----CCCCC-CCc---------CCHHHhhhHHHHHHHhCC
Q 026569 5 QLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAA-----ENFDY-PVA---------MDIRELISLEDVMEELGL 68 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g-~l~~~~G~i~i~~~d~~~-----~~~~~-~~~---------~~i~~~i~~~~~l~~~~l 68 (236)
+.|.||||+||||+++++++ ++.+..|.+.++|.+... ..+.+ ++. ....+...+.+.++.+.-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 78999999999999999999 789999999988755321 11111 000 000000012233333211
Q ss_pred CCCCchhhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 69 GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
.... .... .+ ..+.. +|+++|+|||+++|..++..+. +.+++.. .+.++|++.
T Consensus 119 ~~~~------~~~~-~l-----s~l~~--~~~vlilDE~~~L~~~~~~~L~-~~le~~~-~~~~~Il~t 171 (354)
T 1sxj_E 119 MEQV------DFQD-SK-----DGLAH--RYKCVIINEANSLTKDAQAALR-RTMEKYS-KNIRLIMVC 171 (354)
T ss_dssp TTC--------------------------CCEEEEEECTTSSCHHHHHHHH-HHHHHST-TTEEEEEEE
T ss_pred hccc------cccc-cc-----cccCC--CCeEEEEeCccccCHHHHHHHH-HHHHhhc-CCCEEEEEe
Confidence 1100 0000 00 01345 8999999999999999888777 7777653 355555553
No 112
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.05 E-value=2.2e-09 Score=93.24 Aligned_cols=108 Identities=16% Similarity=0.063 Sum_probs=72.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCC--CchhhhHH
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPN--GGLIYCME 79 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~--~~~~~~~~ 79 (236)
+.+++++|+|||||||+++.+++++.+.+|+|.+.+.|+.... ..++ ...+.+..++.-. +....+.+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~-------~~~q---l~~~~~~~~l~~~~~~~~~~p~~ 167 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA-------AREQ---LRLLGEKVGVPVLEVMDGESPES 167 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH-------HHHH---HHHHHHHHTCCEEECCTTCCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh-------HHHH---HHHhcccCCeEEEEcCCCCCHHH
Confidence 3578899999999999999999999999999999998874310 0111 2234455565421 10000111
Q ss_pred hhhhcHHHHHHHHHhcCCCCCEEEEeCC-Cc-ccHHhHHHHHHHHHHHH
Q 026569 80 HLEDNLDDWLAEELDNYLDDDYLVFDCP-GQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 80 ~~~~~~s~~la~~l~~~~~p~~lllDEP-t~-LD~~~~~~~~~~ll~~l 126 (236)
+ .+.+++.+... +++++|+||| +. +|......+. ++.+.+
T Consensus 168 -l---~~~~l~~~~~~--~~D~viiDtpp~~~~d~~~~~~l~-~~~~~~ 209 (295)
T 1ls1_A 168 -I---RRRVEEKARLE--ARDLILVDTAGRLQIDEPLMGELA-RLKEVL 209 (295)
T ss_dssp -H---HHHHHHHHHHH--TCCEEEEECCCCSSCCHHHHHHHH-HHHHHH
T ss_pred -H---HHHHHHHHHhC--CCCEEEEeCCCCccccHHHHHHHH-HHhhhc
Confidence 1 23566766667 8999999999 55 8887777766 666655
No 113
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.04 E-value=8.5e-10 Score=98.42 Aligned_cols=125 Identities=14% Similarity=0.057 Sum_probs=73.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhh-HHHHHHHhCCCCCCchhhhHHhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~-~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
..++|+||||||||||+++|+|+++|++|.|.+.|... +...........+. -+... +. ..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e----~~~~~~~~~v~~v~~q~~~~---~~-----------~~ 237 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE----LFLPDHPNHVHLFYPSEAKE---EE-----------NA 237 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC----CCCTTCSSEEEEECC-----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc----cCccccCCEEEEeecCcccc---cc-----------cc
Confidence 46899999999999999999999999999999987421 11100000000000 00000 00 01
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHH
Q 026569 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (236)
.......++.++.. +|+.+++|||.. .+.. ++++.+.....+++.+. |. .++...++++..+..
T Consensus 238 ~~t~~~~i~~~l~~--~pd~~l~~e~r~------~~~~-~~l~~l~~g~~~~l~t~----H~-~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 238 PVTAATLLRSCLRM--KPTRILLAELRG------GEAY-DFINVAASGHGGSITSC----HA-GSCELTFERLALMVL 301 (361)
T ss_dssp -CCHHHHHHHHTTS--CCSEEEESCCCS------THHH-HHHHHHHTTCCSCEEEE----EC-SSHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHhc--CCCEEEEcCchH------HHHH-HHHHHHhcCCCeEEEEE----CC-CCHHHHHHHHHHHHh
Confidence 11233677778877 999999999985 2334 56666644333433332 33 346666666655543
No 114
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.04 E-value=4.7e-10 Score=98.02 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=63.2
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
+.+++|+|||||||||+++.|++++.+.+|+|.+.+.|+.+. ...+. +..+.+..++........ ...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~--------~a~eq--L~~~~~~~gl~~~~~~s~--~~~ 171 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA--------AAIEQ--LKIWGERVGATVISHSEG--ADP 171 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH--------HHHHH--HHHHHHHHTCEEECCSTT--CCH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH--------HHHHH--HHHHHHHcCCcEEecCCc--cCH
Confidence 367999999999999999999999999999999999886321 01111 345666666542110000 000
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCc
Q 026569 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~ 109 (236)
..-...++++++.. +++++|+|+|+.
T Consensus 172 ~~v~~~al~~a~~~--~~dvvIiDtpg~ 197 (306)
T 1vma_A 172 AAVAFDAVAHALAR--NKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHHHHHT--TCSEEEEEECCC
T ss_pred HHHHHHHHHHHHhc--CCCEEEEECCCc
Confidence 00001367788888 999999999996
No 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.02 E-value=5.8e-11 Score=95.63 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=32.8
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
|+.+++|+|||||||||+++.|++ +.+|.+.+++.++
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII 37 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence 677899999999999999999997 6688999988665
No 116
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.00 E-value=1e-10 Score=92.77 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=34.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (236)
-+++|+||||||||||+|+|+|++ |++|+|.+.|.++.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee
Confidence 478999999999999999999999 99999999887763
No 117
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.98 E-value=1.9e-09 Score=97.46 Aligned_cols=119 Identities=17% Similarity=0.153 Sum_probs=63.1
Q ss_pred eeEEEEcCCCCcHHHHHHHH--HhCCcCCC-----ceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCC----
Q 026569 3 YAQLVIGPAGSGKSTYCSSL--YRHCETVR-----RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPN---- 71 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l--~g~l~~~~-----G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~---- 71 (236)
-+++|+||||||||||++.+ .+..+++. +.+++.+.+.. +.. .+.+..+.+++.+.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~----------~~~---rl~~~a~~~gl~~~~vle 245 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF----------RPV---RLVSIAQRFGLDPDDALN 245 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC----------CHH---HHHHHHHHTTCCHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc----------CHH---HHHHHHHHcCCChHhHhh
Confidence 47899999999999999954 56666533 36666654421 000 12233444444321
Q ss_pred -Cch--hhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhH------------HHHHHHHHHHHHh-CCCcEE
Q 026569 72 -GGL--IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH------------VPVLRNFVDHLKS-RNFNVC 134 (236)
Q Consensus 72 -~~~--~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~------------~~~~~~ll~~l~~-~~~~ii 134 (236)
... ....+...... ..+...+... +|+++++|+|+. ++.... ..++ +.++++++ .|.+|+
T Consensus 246 ni~~~~~~~~~~~~~~l-~~~~~~l~~~-~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il-~~L~~lake~gitVI 322 (400)
T 3lda_A 246 NVAYARAYNADHQLRLL-DAAAQMMSES-RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM-RALQRLADQFGVAVV 322 (400)
T ss_dssp TEEEEECCSHHHHHHHH-HHHHHHHHHS-CEEEEEEETGGGGCC------CCHHHHHHHHHHHH-HHHHHHHHHHCCEEE
T ss_pred cEEEeccCChHHHHHHH-HHHHHHHHhc-CCceEEecchhhhCchhhcCccchHHHHHHHHHHH-HHHHHHHHHcCCEEE
Confidence 000 00000000001 1111222222 799999999998 875432 3455 56666654 588988
Q ss_pred EEE
Q 026569 135 AVY 137 (236)
Q Consensus 135 ~v~ 137 (236)
+++
T Consensus 323 lv~ 325 (400)
T 3lda_A 323 VTN 325 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 118
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.97 E-value=3.8e-10 Score=102.59 Aligned_cols=126 Identities=16% Similarity=0.241 Sum_probs=61.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeecCCC-CCCCCC-------CCcCCHHHhhhHHHHHHHhCCCCCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPA-AENFDY-------PVAMDIRELISLEDVMEELGLGPNG 72 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G--~i~i~~~d~~-~~~~~~-------~~~~~i~~~i~~~~~l~~~~l~~~~ 72 (236)
+-++|+||||||||||++.++|...+..| .+.+.+.... ...+.+ ...+++.|++........ ....
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~ 108 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCW 108 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC--------------C
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc---hhhH
Confidence 45799999999999999999999875443 1111110000 011111 123345555433221110 0000
Q ss_pred chhhhHHhhhhcHH------HHHHHHHhcCCCCC---EEEEeCCC-c-ccHHhHHHHHHHHHHHHHhCCCcEEEE-Eecc
Q 026569 73 GLIYCMEHLEDNLD------DWLAEELDNYLDDD---YLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRNFNVCAV-YLLD 140 (236)
Q Consensus 73 ~~~~~~~~~~~~~s------~~la~~l~~~~~p~---~lllDEPt-~-LD~~~~~~~~~~ll~~l~~~~~~ii~v-~l~d 140 (236)
....+++...++ +.|+++++. +|+ ++++|||| . +|+... .+++.+.. +.++|+| +=.|
T Consensus 109 --~~i~~~i~~~~~~~l~qr~~IaRal~~--d~~~~vlL~ldePt~~~L~~~d~-----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 109 --QPVIDYIDSKFEDYLNAESRVNRRQMP--DNRVQCCLYFIAPSGHGLKPLDI-----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp --HHHHHHHHHHHHHHTTTSCC-CCCCCC--CC-CCEEEEECCC-CCSCCHHHH-----HHHHHHTT-TSEEEEEEESTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCeeEEEEEecCcccCCCHHHH-----HHHHHHhc-cCcEEEEEEccc
Confidence 000011111111 457788777 999 99999998 5 988763 45556644 6666554 4344
Q ss_pred c
Q 026569 141 S 141 (236)
Q Consensus 141 ~ 141 (236)
.
T Consensus 179 l 179 (418)
T 2qag_C 179 T 179 (418)
T ss_dssp S
T ss_pred C
Confidence 3
No 119
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.96 E-value=4.1e-09 Score=97.44 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=36.7
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (236)
+.+++|+||||||||||++.|+|++++.+|+|.+.+.|+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 4689999999999999999999999999999999987763
No 120
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.94 E-value=3.5e-10 Score=91.85 Aligned_cols=125 Identities=12% Similarity=0.005 Sum_probs=66.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC-----cCCCceEEEeec-------CCCCCCCCC--------------------CC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNL-------DPAAENFDY--------------------PV 49 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l-----~~~~G~i~i~~~-------d~~~~~~~~--------------------~~ 49 (236)
+..++|+|+||||||||++.++|.. .|+.|.+...+. ... +..++ .+
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 104 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLE 104 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE-ECCCCC------CCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999988 777787654221 000 00000 00
Q ss_pred ------------cCC--HHH-hhhHHHHHHHhCCCCCCchhhhHHhhhhcHH---HHHHHHHhcCCCCCEEEEeCCCc-c
Q 026569 50 ------------AMD--IRE-LISLEDVMEELGLGPNGGLIYCMEHLEDNLD---DWLAEELDNYLDDDYLVFDCPGQ-I 110 (236)
Q Consensus 50 ------------~~~--i~~-~i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s---~~la~~l~~~~~p~~lllDEPt~-L 110 (236)
+.+ ... ...+.++++..++.... .....+.++++.+ ...+++++. +|+.+++|||++ +
T Consensus 105 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~nK~D~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sal 181 (210)
T 1pui_A 105 KRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV-LLTKADKLASGARKAQLNMVREAVL--AFNGDVQVETFSSL 181 (210)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEE-EEECGGGSCHHHHHHHHHHHHHHHG--GGCSCEEEEECBTT
T ss_pred hhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEE-EEecccCCCchhHHHHHHHHHHHHH--hcCCCCceEEEeec
Confidence 000 000 00133444555543210 0111233433321 466777777 888889999999 9
Q ss_pred cHHhHHHHHHHHHHHHHhCCC
Q 026569 111 ELFTHVPVLRNFVDHLKSRNF 131 (236)
Q Consensus 111 D~~~~~~~~~~ll~~l~~~~~ 131 (236)
|.....+++ +.+.++.+++.
T Consensus 182 ~~~~~~~l~-~~l~~~~~~~~ 201 (210)
T 1pui_A 182 KKQGVDKLR-QKLDTWFSEMQ 201 (210)
T ss_dssp TTBSHHHHH-HHHHHHHC---
T ss_pred CCCCHHHHH-HHHHHHHhhcc
Confidence 999999999 77777655443
No 121
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.91 E-value=4.5e-11 Score=104.43 Aligned_cols=98 Identities=17% Similarity=0.095 Sum_probs=63.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee-cCCC------C-CCCCCCCcCCHHHhhhHHHHHHHhCCCCCCch
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA------A-ENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~-~d~~------~-~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~ 74 (236)
-+++|+||||||||||+++|+|++ +|+|.... .++. . +++.+.++.+ + .+.+.++.+ +. ++..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~--~--~~~~~i~~~-L~-~gld 197 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLASLADTRAALVDDAT--H--ACWRYFDTY-LR-NALD 197 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGGGGTTCSCEEEEEEC--H--HHHHHHHHT-TT-GGGG
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccccHHHHhhccCcccc--H--HHHHHHHHH-hH-ccCC
Confidence 578999999999999999999998 89997543 2221 1 1233221111 1 245555553 21 1111
Q ss_pred hhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 026569 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (236)
Q Consensus 75 ~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~ 119 (236)
-..++++++.. ||+++. +|++|| |+ ||+.+...+.
T Consensus 198 ---g~~LSgGqkQR-ARAll~--~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 198 ---GYPVSIDRKHK-AAVQIK--APPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp ---TCCEECCCSSC-CCCEEC--CCCEEE----EESSCSTTCGGGG
T ss_pred ---ccCcCHHHHHH-HHHHhC--CCCEEE----ECCCCHHHHHHHH
Confidence 12355555444 999999 999999 88 9999886655
No 122
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.88 E-value=6.3e-09 Score=90.41 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=58.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G-~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
.+++++|||||||||+++.|++.+.+.+| +|.+.+.|+.+ ....+. +..+.+..|+...... -
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r--------~~a~eq--L~~~~~~~gl~~~~~~------~ 169 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR--------IAAVEQ--LKTYAELLQAPLEVCY------T 169 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS--------TTHHHH--HHHHHTTTTCCCCBCS------S
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc--------chHHHH--HHHHHHhcCCCeEecC------C
Confidence 47899999999999999999999998777 89999887631 122332 2223334454322110 0
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhH
Q 026569 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH 115 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~ 115 (236)
...++.++++ +. +++++|+|.|+ +|....
T Consensus 170 ~~~l~~al~~--~~--~~dlvIiDT~G-~~~~~~ 198 (296)
T 2px0_A 170 KEEFQQAKEL--FS--EYDHVFVDTAG-RNFKDP 198 (296)
T ss_dssp HHHHHHHHHH--GG--GSSEEEEECCC-CCTTSH
T ss_pred HHHHHHHHHH--hc--CCCEEEEeCCC-CChhhH
Confidence 1223344553 36 89999999665 444433
No 123
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.86 E-value=1.9e-09 Score=98.03 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH-HHhCCCcEEEE
Q 026569 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH-LKSRNFNVCAV 136 (236)
Q Consensus 87 ~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~-l~~~~~~ii~v 136 (236)
+.++++|.. +.+++++|+|+. |.......+. +.+++ +...|..|+.+
T Consensus 167 ieilk~L~~--~~~vI~Vi~KtD~Lt~~E~~~l~-~~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 167 LVTMKKLDS--KVNIIPIIAKADAISKSELTKFK-IKITSELVSNGVQIYQF 215 (427)
T ss_dssp HHHHHHTCS--CSEEEEEESCGGGSCHHHHHHHH-HHHHHHHBTTBCCCCCC
T ss_pred HHHHHHHhh--CCCEEEEEcchhccchHHHHHHH-HHHHHHHHHcCCcEEec
Confidence 788888886 899999999998 9888777777 66664 87778877644
No 124
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.84 E-value=1.4e-09 Score=94.59 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC-CcCCCceEEEeecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~-l~~~~G~i~i~~~d~ 40 (236)
+-++|+||||||||||++.|.|. +.|++| +.+.|.++
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~ 56 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKI 56 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-----------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCccc
Confidence 56799999999999999999998 888888 76665543
No 125
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.81 E-value=3.6e-08 Score=81.70 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=29.2
Q ss_pred CCCEEEEeCCCc-c--cHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 98 DDDYLVFDCPGQ-I--ELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 98 ~p~~lllDEPt~-L--D~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
+|+++++|+|+. . |.......+..+.+.+++.|.++++++
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~ 170 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVS 170 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 899999999998 5 554555666455555556788888774
No 126
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.80 E-value=1.3e-09 Score=100.71 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=35.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (236)
+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 68999999999999999999999999999999997753
No 127
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.77 E-value=9.3e-09 Score=80.55 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=50.1
Q ss_pred HhhhhcHH--HH------HHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhh
Q 026569 79 EHLEDNLD--DW------LAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK 149 (236)
Q Consensus 79 ~~~~~~~s--~~------la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~ 149 (236)
..+++|++ ++ +|++++. +|+++|+||||+ ||+.++..+. ++++++.+.|.+++++. |.. +...
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiivs----H~~-~~~~ 127 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILVS----HDE-ELKD 127 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHS--SCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSEEEEEE----SCG-GGGG
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcC--CCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCEEEEEE----ChH-HHHH
Confidence 45666654 43 3488888 999999999999 9999999999 99998876678887774 655 3444
Q ss_pred Hhh
Q 026569 150 FIS 152 (236)
Q Consensus 150 ~~~ 152 (236)
+++
T Consensus 128 ~~d 130 (148)
T 1f2t_B 128 AAD 130 (148)
T ss_dssp GCS
T ss_pred hCC
Confidence 443
No 128
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.76 E-value=2.6e-09 Score=105.35 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=83.9
Q ss_pred HHHhCCcCCCceEEEeecCCCC-------------CCCCCCC-cCC-H----HHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026569 21 SLYRHCETVRRTMHIVNLDPAA-------------ENFDYPV-AMD-I----RELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 21 ~l~g~l~~~~G~i~i~~~d~~~-------------~~~~~~~-~~~-i----~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
+..+.++|..|+|.++|.++.. +++.+.. ... . .+.-...+.+..+|++...... ....+
T Consensus 387 C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r-~~~~L 465 (916)
T 3pih_A 387 CGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSR-SATTL 465 (916)
T ss_dssp TCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTS-BGGGC
T ss_pred cccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccC-CcccC
Confidence 3345678999999999987632 1122211 111 1 1111244677788887532111 13456
Q ss_pred hhcHH--HHHHHHHhcCCCCC--EEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026569 82 EDNLD--DWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 82 ~~~~s--~~la~~l~~~~~p~--~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++.+ ++||++|+. +|+ ++||||||+ ||+.....++ ++++++++.|.||++|. |++... ..++.++.
T Consensus 466 SGGe~QRv~LAraL~~--~p~~~lllLDEPT~gLD~~~~~~l~-~~L~~L~~~G~TvivVt----Hd~~~~-~~aD~ii~ 537 (916)
T 3pih_A 466 SGGESQRIRLATQIGS--GLTGVIYVLDEPTIGLHPRDTERLI-KTLKKLRDLGNTVIVVE----HDEEVI-RNADHIID 537 (916)
T ss_dssp CHHHHHHHHHHHHHHT--TCCSCEEEEECTTTTCCGGGHHHHH-HHHHHTTTTTCEEEEEC----CCHHHH-HTCSEEEE
T ss_pred CHHHHHHHHHHHHHhh--CCCCcEEEEECCccCCCHHHHHHHH-HHHHHHHhcCCEEEEEe----CCHHHH-HhCCEEEE
Confidence 66654 999999998 776 999999999 9999999999 99999987899998884 554322 22444444
Q ss_pred H
Q 026569 157 S 157 (236)
Q Consensus 157 ~ 157 (236)
.
T Consensus 538 l 538 (916)
T 3pih_A 538 I 538 (916)
T ss_dssp E
T ss_pred E
Confidence 3
No 129
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.72 E-value=6.5e-09 Score=83.70 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=31.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-----------CCceEEEeecC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----------VRRTMHIVNLD 39 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----------~~G~i~i~~~d 39 (236)
+.++|+|+||||||||++.++|...+ ..|.|.++|.+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 57899999999999999999998765 46778877643
No 130
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.69 E-value=1.1e-08 Score=82.02 Aligned_cols=36 Identities=31% Similarity=0.284 Sum_probs=32.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
.+++|+|||||||||+++.|+|. +..|.|.+++.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence 57999999999999999999998 6789999987653
No 131
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.69 E-value=4.6e-08 Score=86.84 Aligned_cols=117 Identities=13% Similarity=0.166 Sum_probs=66.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
-++.|.||||||||||+..++......+|.+.+...... +. + ...+.+|+....-.... ....
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-----~~------~-----~~a~~lG~~~~~l~i~~-~~~~ 124 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-----LD------P-----EYAKKLGVDTDSLLVSQ-PDTG 124 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-----CC------H-----HHHHHTTCCGGGCEEEC-CSSH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-----cC------H-----HHHHHcCCCHHHeEEec-CCCH
Confidence 468999999999999999998766666677777654321 10 0 02344454322100000 0011
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCc-c----------cHH--hHHHHHHHHHHHH----HhCCCcEEEEE
Q 026569 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-I----------ELF--THVPVLRNFVDHL----KSRNFNVCAVY 137 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~-L----------D~~--~~~~~~~~ll~~l----~~~~~~ii~v~ 137 (236)
... ..++++++...+|+++++|+|++ + |.. .+...+.+.+++| ++.+.++++++
T Consensus 125 e~~-l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~in 195 (349)
T 2zr9_A 125 EQA-LEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 195 (349)
T ss_dssp HHH-HHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHH-HHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 122 55666666522699999999998 5 210 1111222445554 45688887774
No 132
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.69 E-value=8.4e-09 Score=89.86 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEE---eecC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHI---VNLD 39 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~--~~~G~i~i---~~~d 39 (236)
.+++|+||||||||||+++|+|++. |++|+|.+ +|..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 6899999999999999999999988 99999999 6544
No 133
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.68 E-value=9e-08 Score=87.28 Aligned_cols=152 Identities=17% Similarity=0.171 Sum_probs=84.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
+.+++++||+||||||++..|++++.+.+++|.+.+.|+.+. ...+. +..+.+..++.-..... . ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~--------~a~eq--L~~~~~~~gv~~~~~~~-~-~dp 164 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP--------AAYDQ--LLQLGNQIGVQVYGEPN-N-QNP 164 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH--------HHHHH--HHHHHHTTTCCEECCTT-C-SCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch--------hHHHH--HHHHHHhcCCceeeccc-c-CCH
Confidence 357899999999999999999999999999999998885321 01111 22333444443111000 0 000
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCc----ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026569 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ----IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~----LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
..-....++.+... +++++|+|+|+. .|.....++. .+.+.+ +.. .+++| +|++.-.+....+
T Consensus 165 ~~i~~~al~~a~~~--~~DvvIIDTaGr~~~~~d~~lm~el~-~i~~~~-~pd-~vlLV--lDa~~gq~a~~~a------ 231 (433)
T 3kl4_A 165 IEIAKKGVDIFVKN--KMDIIIVDTAGRHGYGEETKLLEEMK-EMYDVL-KPD-DVILV--IDASIGQKAYDLA------ 231 (433)
T ss_dssp HHHHHHHHHHTTTT--TCSEEEEEECCCSSSCCTTHHHHHHH-HHHHHH-CCS-EEEEE--EEGGGGGGGHHHH------
T ss_pred HHHHHHHHHHHHhc--CCCEEEEECCCCccccCCHHHHHHHH-HHHHhh-CCc-ceEEE--EeCccchHHHHHH------
Confidence 00011334444445 899999999995 4555444444 544444 222 33333 5665533333322
Q ss_pred HHHHHh-hCCCeeeeccccccccc
Q 026569 158 LSAMVQ-LELPHVNILSKMDLVTN 180 (236)
Q Consensus 158 ~~~~i~-~~~p~i~vlsk~dll~~ 180 (236)
..+. .-.+...|+||.|--.+
T Consensus 232 --~~f~~~~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 232 --SRFHQASPIGSVIITKMDGTAK 253 (433)
T ss_dssp --HHHHHHCSSEEEEEECGGGCSC
T ss_pred --HHHhcccCCcEEEEeccccccc
Confidence 1111 11345677888886543
No 134
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.66 E-value=8.8e-09 Score=91.01 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=38.0
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~ 42 (236)
..+++|+||||||||||++.|+|++.|++|+|.+.+.++..
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 36799999999999999999999999999999999998854
No 135
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.66 E-value=1e-09 Score=92.01 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
+++|+||||||||||+++|+|++.|++|.|.++|.+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 3578999999999999999999999999999998765
No 136
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.64 E-value=1e-08 Score=82.50 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=26.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceE
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i 33 (236)
-+++|+|||||||||++++|+|++++..|.+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~ 32 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFS 32 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEE
Confidence 3689999999999999999999997544433
No 137
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.62 E-value=8.8e-09 Score=84.34 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=32.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcC---CCceEEEeecCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDP 40 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~---~~G~i~i~~~d~ 40 (236)
+.+++|+||||||||||++.|+|+++| ..|.|.++|...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 368999999999999999999999986 467777766544
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.60 E-value=2.1e-08 Score=91.10 Aligned_cols=38 Identities=32% Similarity=0.300 Sum_probs=34.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
-+++|+|||||||||+++++.|++.|.+|+|.+.+.++
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 46899999999999999999999999999999998654
No 139
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.59 E-value=4.9e-09 Score=84.05 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=31.3
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCC---CceEEEeecC
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLD 39 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~~---~G~i~i~~~d 39 (236)
|..+++|+|+||||||||++.|.|+++|. .|.|.++|.+
T Consensus 1 m~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 55679999999999999999999999998 7999988765
No 140
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.59 E-value=2.2e-08 Score=87.00 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=26.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE---eecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i---~~~d~ 40 (236)
.+++++||||||||||+++|+|+.+|+.|+|.+ .|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence 468999999999999999999999999999998 77654
No 141
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.54 E-value=4.1e-08 Score=86.29 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.2
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc--CCCceEEEeecCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP 40 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~--~~~G~i~i~~~d~ 40 (236)
+++++|+|||||||||+++.|++++. |.+|.+.+.+.|.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 47999999999999999999999987 5688888877664
No 142
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.54 E-value=1.5e-08 Score=92.12 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=73.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC-----------CcCCCceEEEee-cCCC-CCCCCCCC----cCCH-HHhhh----HH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH-----------CETVRRTMHIVN-LDPA-AENFDYPV----AMDI-RELIS----LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~-----------l~~~~G~i~i~~-~d~~-~~~~~~~~----~~~i-~~~i~----~~ 60 (236)
..++|+|+||||||||+++|+|. +.|..|.+.+.+ .... .+...+.. ...+ ..... ++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 35899999999999999999998 344445554433 1100 01111100 0000 01000 11
Q ss_pred HHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 61 DVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 61 ~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
.++..+++. . .+.+.++..++ ..++++++. .|.++++ + +|+... ..+..+.+.+++.+.+++.+
T Consensus 238 ~lL~vvDls--~---~~~~~ls~g~~el~~la~aL~~--~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~i- 304 (416)
T 1udx_A 238 VLLYVLDAA--D---EPLKTLETLRKEVGAYDPALLR--RPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPV- 304 (416)
T ss_dssp EEEEEEETT--S---CHHHHHHHHHHHHHHHCHHHHH--SCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEEC-
T ss_pred hhhEEeCCc--c---CCHHHHHHHHHHHHHHhHHhhc--CCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEE-
Confidence 112222333 1 11223333322 677888888 9999999 7 999877 44535555555567776544
Q ss_pred ecccccccchhhHhhhhH
Q 026569 138 LLDSQFITDVTKFISGCM 155 (236)
Q Consensus 138 l~d~~~~~d~~~~~~~~l 155 (236)
+++.-......+..+.
T Consensus 305 --SA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 305 --SALTGAGLPALKEALH 320 (416)
T ss_dssp --CTTTCTTHHHHHHHHH
T ss_pred --ECCCccCHHHHHHHHH
Confidence 4555555555554443
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.54 E-value=6.6e-07 Score=78.83 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=64.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCC-ceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~-G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
.+.|.||+|+||||+++.+++.+.+.. ..+...+... ..+..+. +..+.+.++........ ......
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~---------~~~~~~~--~~~l~~~l~~~~~~~~~-~~~~~~ 113 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI---------YRNFTAI--IGEIARSLNIPFPRRGL-SRDEFL 113 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT---------CCSHHHH--HHHHHHHTTCCCCSSCC-CHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc---------CCCHHHH--HHHHHHHhCccCCCCCC-CHHHHH
Confidence 688999999999999999999887652 3333332111 0122222 44555666543211000 011111
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh---CCCcEEEE
Q 026569 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS---RNFNVCAV 136 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~---~~~~ii~v 136 (236)
..+...+.....|.++++||+..+|......+. +++..+.. .+..+|++
T Consensus 114 ----~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~-~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 114 ----ALLVEHLRERDLYMFLVLDDAFNLAPDILSTFI-RLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp ----HHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHH-HHTTCHHHHSSCCEEEEEE
T ss_pred ----HHHHHHHhhcCCeEEEEEECccccchHHHHHHH-HHHHhCCCCCcCCEEEEEE
Confidence 222222222115789999999999877776666 66655543 35555544
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.53 E-value=2.6e-08 Score=81.18 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
..++|+||||||||||++.|.|+++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5689999999999999999999875
No 145
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.52 E-value=3.7e-08 Score=80.23 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=35.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
+.+++|+|+|||||||+++.|++.+++.+|.|.+.+.|.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 368999999999999999999999998899999988775
No 146
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.51 E-value=6e-08 Score=90.27 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=34.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (236)
.+++|+|||||||||++++|+|+++|+.|.|.+.|.+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 4689999999999999999999999999999998754
No 147
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.50 E-value=5.4e-08 Score=78.63 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=27.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (236)
+.+++|+|||||||||++++|+|+++ .+.+.+.+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~ 40 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA----EIKISISH 40 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCE
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC----CeEEecee
Confidence 35799999999999999999999964 46665543
No 148
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.49 E-value=4e-08 Score=85.93 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=35.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC--------cCCCceEEEeecCCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPA 41 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l--------~~~~G~i~i~~~d~~ 41 (236)
-+++|+|+||||||||++.|.|.. .++.|+|.++|.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 478999999999999999999997 789999999997764
No 149
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.49 E-value=1.4e-06 Score=75.67 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=35.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (236)
.+++++|++|+||||++..+++.+.+.+++|.+.+.|+.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 578899999999999999999999999999999998864
No 150
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.49 E-value=6.5e-07 Score=79.67 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=54.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
-++.|.||||||||||+..++....+.+|.|.+....... + . ...+++++.+..-.... ....
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---------~--~-----~ra~rlgv~~~~l~i~~-~~~~ 124 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---------D--P-----VYAKNLGVDLKSLLISQ-PDHG 124 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---------C--H-----HHHHHHTCCGGGCEEEC-CSSH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---------c--h-----HHHHHcCCchhhhhhhh-ccCH
Confidence 5789999999999999999999988888887665432111 0 0 13445555432111110 0011
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCc
Q 026569 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~ 109 (236)
... +++++.+.....|+++++|+-+.
T Consensus 125 e~~-l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 125 EQA-LEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHH-HHHHHHHHHTSCCSEEEEECTTT
T ss_pred HHH-HHHHHHHhhhcCCCeEEehHhhh
Confidence 122 45555554322799999998776
No 151
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.47 E-value=1.7e-07 Score=82.31 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=36.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (236)
.+++++|||||||||++..|++++.+.+|+|.+.+.|+.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 578999999999999999999999999999999998863
No 152
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.47 E-value=9e-08 Score=83.20 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=29.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE---eecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i---~~~d~ 40 (236)
.+++++||||||||||+++|. ..+|..|+|.+ .|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT 205 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc
Confidence 578999999999999999999 99999999999 77655
No 153
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.43 E-value=8.5e-08 Score=76.70 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=30.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEeecCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP 40 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~-~~G~i~i~~~d~ 40 (236)
+.+++|+||||||||||++.|.+.+++ ..|.|......|
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~ 44 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 44 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence 457899999999999999999998764 556665554443
No 154
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.43 E-value=3.1e-08 Score=85.82 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=25.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV 29 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~ 29 (236)
+++++|.||+|||||||++.|.+++.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4789999999999999999999998764
No 155
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.42 E-value=1.1e-07 Score=77.30 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=29.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
.+++|+|||||||||+++.|++.+ |.+.+++.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 579999999999999999999986 8888887654
No 156
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.41 E-value=8.1e-08 Score=79.65 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=16.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHH-hCCcC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLY-RHCET 28 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~-g~l~~ 28 (236)
.+++|+|||||||||+++.|+ |++++
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----C
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 578999999999999999999 99854
No 157
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.39 E-value=1.6e-07 Score=83.64 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=27.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEEe-ecC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIV-NLD 39 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-~~~G~i~i~-~~d 39 (236)
.+++|+||||||||||+++|+|... +..|+|.+. |.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g 254 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG 254 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence 4689999999999999999999999 999999886 543
No 158
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.39 E-value=3.1e-06 Score=73.46 Aligned_cols=98 Identities=11% Similarity=0.149 Sum_probs=59.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~ 83 (236)
.+.|.||+|+||||+++.+++.+...+..+.+.+. .+. ..++...+. ..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~---------------~~~--~~~~~~~~~--------------~~ 87 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA---------------DDF--AQAMVEHLK--------------KG 87 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH---------------HHH--HHHHHHHHH--------------HT
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH---------------HHH--HHHHHHHHH--------------cC
Confidence 57899999999999999999977654444443321 111 111111110 00
Q ss_pred cHHHHHHHHHhcCCCCCEEEEeCCCcccH--HhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL--FTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 84 ~~s~~la~~l~~~~~p~~lllDEPt~LD~--~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
.. ..+... .. ++++|++||+..+.. ..+..+. .+++.+.+.+..++++.
T Consensus 88 ~~-~~~~~~-~~--~~~vL~iDEi~~l~~~~~~~~~l~-~~l~~~~~~~~~iii~~ 138 (324)
T 1l8q_A 88 TI-NEFRNM-YK--SVDLLLLDDVQFLSGKERTQIEFF-HIFNTLYLLEKQIILAS 138 (324)
T ss_dssp CH-HHHHHH-HH--TCSEEEEECGGGGTTCHHHHHHHH-HHHHHHHHTTCEEEEEE
T ss_pred cH-HHHHHH-hc--CCCEEEEcCcccccCChHHHHHHH-HHHHHHHHCCCeEEEEe
Confidence 11 111222 23 789999999988544 6667777 88887766676666554
No 159
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.39 E-value=3.4e-08 Score=83.49 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=30.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHH---hCCcCCCceEE
Q 026569 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMH 34 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~---g~l~~~~G~i~ 34 (236)
.+++|+|||||||||+++.|+ |+..+++|.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 579999999999999999999 99999999987
No 160
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.37 E-value=1.3e-06 Score=77.26 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHh--CCcCCCceEE
Q 026569 4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTMH 34 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g--~l~~~~G~i~ 34 (236)
.++|+|++|||||||++.+.| +++...|.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 478999999999999999999 5666666553
No 161
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.35 E-value=2.3e-07 Score=74.87 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=26.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G 31 (236)
+.+++|+|||||||||+++.|++.+.|+.|
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 357899999999999999999999877555
No 162
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.35 E-value=1.2e-07 Score=76.99 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=32.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceE--EEeecCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM--HIVNLDP 40 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i--~i~~~d~ 40 (236)
+.+++|+|||||||||+++.|++.+. ..|.+ ++++.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 36799999999999999999999987 67887 7777554
No 163
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.35 E-value=1.7e-06 Score=78.95 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=59.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCC--CceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~--~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
.+.|.||+|+|||||++++++.+... +..+.+.+ ..+. ..++.+.+.-.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~---------------~~~~--~~~~~~~~~~~------------ 182 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT---------------SEKF--LNDLVDSMKEG------------ 182 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE---------------HHHH--HHHHHHHHHTT------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee---------------HHHH--HHHHHHHHHcc------------
Confidence 47899999999999999999876432 22332221 1111 11222111100
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccH-HhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IEL-FTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~-~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
.. ..+...+.. ++++|++||+.. .+. ..+..+. .++..+.+.|..++++.
T Consensus 183 --~~-~~~~~~~~~--~~~vL~IDEi~~l~~~~~~q~~l~-~~l~~l~~~~~~iIitt 234 (440)
T 2z4s_A 183 --KL-NEFREKYRK--KVDILLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVICS 234 (440)
T ss_dssp --CH-HHHHHHHTT--TCSEEEEECGGGGSSCHHHHHHHH-HHHHHHHTTTCEEEEEE
T ss_pred --cH-HHHHHHhcC--CCCEEEEeCcccccCChHHHHHHH-HHHHHHHHCCCeEEEEE
Confidence 11 223334444 789999999998 433 5667777 88888777777776653
No 164
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.35 E-value=1.2e-05 Score=73.32 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=59.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
+.+++++|++||||||++..|+.++...+.+|.+...|+.+. ...+. +..+-+..++.-..... . ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~--------aa~eq--L~~~~~~~gvpv~~~~~-~-~dp 167 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP--------GAYHQ--LRQLLDRYHIEVFGNPQ-E-KDA 167 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST--------HHHHH--HHHHHGGGTCEEECCTT-C-CCH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch--------hHHHH--HHHHHHhcCCcEEecCC-C-CCH
Confidence 368899999999999999999999888777898887775321 01111 22333344442110000 0 001
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCc--ccHHhHHHH
Q 026569 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPV 118 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~--LD~~~~~~~ 118 (236)
..-.+.++..+-.. +.+++|+|+|+- .|.....++
T Consensus 168 ~~i~~~al~~a~~~--~~DvVIIDTaGrl~~d~~lm~el 204 (443)
T 3dm5_A 168 IKLAKEGVDYFKSK--GVDIIIVDTAGRHKEDKALIEEM 204 (443)
T ss_dssp HHHHHHHHHHHHHT--TCSEEEEECCCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCCcccchHHHHHHH
Confidence 01111334444444 689999999995 555444443
No 165
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.34 E-value=2e-07 Score=73.33 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.6
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcC
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHCET 28 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~ 28 (236)
|+.+++|+|||||||||+++.|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999998653
No 166
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=7.1e-08 Score=84.24 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE---eecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i---~~~d~ 40 (236)
.+++|+||||||||||+++|.|..++..|+|.+ .|...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT 214 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccc
Confidence 478999999999999999999999999999987 55443
No 167
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.33 E-value=2.3e-07 Score=77.15 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=30.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
.+++|.|+|||||||+++.|+|+ +|+|.+.+.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 57999999999999999999998 78899987654
No 168
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.33 E-value=2.4e-07 Score=91.52 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=57.4
Q ss_pred HHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCC--CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026569 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 62 ~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~--p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
.++.+||+... .......++++.+ +.||++|.. + |+++||||||+ ||+.....++ +++++|++.|.|||+|
T Consensus 487 ~L~~vGL~~l~-ldR~~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIvV 562 (972)
T 2r6f_A 487 FLQNVGLDYLT-LSRSAGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIVV 562 (972)
T ss_dssp HHHHHTCTTSB-SSSBGGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEEE
T ss_pred HhhhCCCCccc-cCCccccCCHHHHHHHHHHHHHhh--CCCCCEEEEeCcccCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 57788987431 1112346766654 999999998 7 49999999999 9999999999 9999998789999888
Q ss_pred E
Q 026569 137 Y 137 (236)
Q Consensus 137 ~ 137 (236)
.
T Consensus 563 e 563 (972)
T 2r6f_A 563 E 563 (972)
T ss_dssp C
T ss_pred e
Confidence 3
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.31 E-value=1.8e-06 Score=78.89 Aligned_cols=132 Identities=12% Similarity=0.022 Sum_probs=71.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEEEeecCCCCC---------CCCCC------CcCCHHHhhhHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAE---------NFDYP------VAMDIRELISLEDVMEEL 66 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G-~i~i~~~d~~~~---------~~~~~------~~~~i~~~i~~~~~l~~~ 66 (236)
-.+.|.|+||+|||||+..+++...+..| .|.+.+.....+ ..++. ..++..+.-.+.+.++.+
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l 283 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSL 283 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999998776444 788877553211 01110 011222222233444444
Q ss_pred CCCCCCchhhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHH----h----HHHHHHHHHHHHHh-CCCcEEEE
Q 026569 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF----T----HVPVLRNFVDHLKS-RNFNVCAV 136 (236)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~----~----~~~~~~~ll~~l~~-~~~~ii~v 136 (236)
+..+.. ...........+ ...++.+....+|+++++|+++. .... . ...+. +.++.+++ .+.+|+++
T Consensus 284 ~~~~l~-i~d~~~~s~~~i-~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~-~~Lk~lAke~~i~vi~~ 360 (454)
T 2r6a_A 284 SNAGIY-IDDTPSIRVSDI-RAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS-RSLKALARELEVPVIAL 360 (454)
T ss_dssp HSSCEE-EECCTTCCHHHH-HHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH-HHHHHHHHHHTCCEEEE
T ss_pred hcCCEE-EECCCCCCHHHH-HHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH-HHHHHHHHHhCCeEEEE
Confidence 322210 000000011223 45566665322899999999998 4321 1 23344 44555654 58888877
Q ss_pred E
Q 026569 137 Y 137 (236)
Q Consensus 137 ~ 137 (236)
+
T Consensus 361 s 361 (454)
T 2r6a_A 361 S 361 (454)
T ss_dssp E
T ss_pred e
Confidence 4
No 170
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.29 E-value=5.1e-07 Score=88.42 Aligned_cols=72 Identities=25% Similarity=0.215 Sum_probs=57.4
Q ss_pred HHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026569 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 62 ~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p--~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
.+..+|++... .......++++.+ +.||++|+. +| .++||||||+ ||+.....++ +++++|++.|.+||+|
T Consensus 362 ~L~~vGL~~l~-l~r~~~tLSGGe~QRV~LA~aL~~--~p~~~llILDEPT~~Ld~~~~~~L~-~~l~~L~~~G~TVIvV 437 (842)
T 2vf7_A 362 VLLHLGLGYLG-LDRSTPTLSPGELQRLRLATQLYS--NLFGVVYVLDEPSAGLHPADTEALL-SALENLKRGGNSLFVV 437 (842)
T ss_dssp HHHHTTCTTSB-TTCBGGGSCHHHHHHHHHHHHTTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEEE
T ss_pred HHHhCCCCcCC-ccCCcCcCCHHHHHHHHHHHHHhh--CCCCeEEEeeCccccCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence 67788987531 1112345666644 999999999 88 5999999999 9999999999 9999998889999888
Q ss_pred E
Q 026569 137 Y 137 (236)
Q Consensus 137 ~ 137 (236)
.
T Consensus 438 e 438 (842)
T 2vf7_A 438 E 438 (842)
T ss_dssp C
T ss_pred c
Confidence 3
No 171
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.29 E-value=6.1e-06 Score=68.44 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~ 29 (236)
+-++|+|++|+|||||++.|.|.....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~ 56 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFH 56 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCc
Confidence 568999999999999999999865443
No 172
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.29 E-value=3.1e-07 Score=81.34 Aligned_cols=41 Identities=22% Similarity=0.436 Sum_probs=36.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE 43 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~ 43 (236)
..++|+|++|||||||++.+.|.+.+.+|+|.+.+.||...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 67999999999999999999999999999999999998643
No 173
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.27 E-value=5.1e-07 Score=73.21 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=26.8
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~ 37 (236)
|.++++|+|||||||||+++.|+++ |...++.
T Consensus 1 m~~~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6678999999999999999999983 5555554
No 174
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.27 E-value=3.7e-07 Score=72.53 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCce
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~ 32 (236)
+.+|+|||||||||++++|.+++.+..|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 67899999999999999999988776554
No 175
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.26 E-value=3.7e-07 Score=90.42 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=56.4
Q ss_pred HHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCC--CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026569 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 62 ~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~--p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
.+..+||+... .......++++.+ +.||++|.. + |+++||||||+ ||+.....++ +++++|++.|.|||+|
T Consensus 504 ~L~~vGL~~l~-l~r~~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIvV 579 (993)
T 2ygr_A 504 FLLDVGLEYLS-LSRAAATLSGGEAQRIRLATQIGS--GLVGVLYVLDEPSIGLHQRDNRRLI-ETLTRLRDLGNTLIVV 579 (993)
T ss_dssp HHHHHTGGGSC-TTCBGGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred HHhhCCCCccc-cCCCcccCCHHHHHHHHHHHHHhh--CCCCcEEEEeCcccCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence 46777876321 1112345666654 999999998 7 58999999999 9999999999 9999998889999888
Q ss_pred E
Q 026569 137 Y 137 (236)
Q Consensus 137 ~ 137 (236)
.
T Consensus 580 e 580 (993)
T 2ygr_A 580 E 580 (993)
T ss_dssp C
T ss_pred C
Confidence 3
No 176
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.25 E-value=5e-07 Score=71.28 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=28.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
.+++|+|||||||||+++.|++.+ |.+.+++.++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 579999999999999999999975 7788776543
No 177
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.25 E-value=1.3e-06 Score=74.27 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=22.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+-++++|++|||||||++.+.|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999999863
No 178
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.25 E-value=4.9e-07 Score=75.75 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=23.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+.+++|+|||||||||++++|+|++
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999976
No 179
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.23 E-value=1.5e-06 Score=69.56 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=43.5
Q ss_pred HhhhhcHH--HHHHHHHhc--CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 79 EHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 79 ~~~~~~~s--~~la~~l~~--~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
..+++|.+ ++||++++. +..|+++|||||++ ||+.+...+. ++++++.+. .++++++
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~-~~l~~~~~~-~~~ivit 124 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVA-DLIKESSKE-SQFIVIT 124 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTT-SEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHH-HHHHHhccC-CEEEEEE
Confidence 45666655 888998874 11469999999999 9999999999 889888654 4555553
No 180
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.22 E-value=6.9e-07 Score=73.04 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=28.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC-CCceEEEee
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVN 37 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-~~G~i~i~~ 37 (236)
.+++|+|||||||||+++.|++.+++ ..+.+....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~t 44 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTT 44 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEES
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEeccc
Confidence 57899999999999999999999876 444444433
No 181
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.19 E-value=2.2e-07 Score=76.26 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=28.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC---cCCCceEEE
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHI 35 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l---~~~~G~i~i 35 (236)
+..++|+||+||||||+++.|++.+ .++.|.++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 3689999999999999999999866 566676655
No 182
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.19 E-value=1.3e-05 Score=72.77 Aligned_cols=40 Identities=25% Similarity=0.259 Sum_probs=36.2
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (236)
+.+++++|++||||||++..|++++.+.+|+|.+.+.|+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 3578899999999999999999999999999999998763
No 183
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.19 E-value=5.3e-06 Score=66.85 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=27.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~ 36 (236)
..+.|.||+|+|||||+++++.......+.+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999999998776555555443
No 184
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.18 E-value=9.9e-07 Score=75.50 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=30.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
+++|+||||||||||+++++|.+.+ |.+.+.|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 5899999999999999999998876 6788877543
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.17 E-value=4e-06 Score=68.55 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=54.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
..+.|.||+|+||||+++.++..+......+.+.+..- ..+.+ . +.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~------------~~~~~--------------~------~~~- 99 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI------------HASIS--------------T------ALL- 99 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG------------GGGSC--------------G------GGG-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH------------HHHHH--------------H------HHH-
Confidence 35789999999999999999987655444444433210 00000 0 000
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcccHHh--HHHHHHHHHHHHHhCCCc-EEEEE
Q 026569 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT--HVPVLRNFVDHLKSRNFN-VCAVY 137 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~--~~~~~~~ll~~l~~~~~~-ii~v~ 137 (236)
. ... ++.++++||...++... ...+. .+++.+.+.+.. ++++.
T Consensus 100 ~---------~~~--~~~vliiDe~~~~~~~~~~~~~l~-~~l~~~~~~~~~~ii~~~ 145 (242)
T 3bos_A 100 E---------GLE--QFDLICIDDVDAVAGHPLWEEAIF-DLYNRVAEQKRGSLIVSA 145 (242)
T ss_dssp T---------TGG--GSSEEEEETGGGGTTCHHHHHHHH-HHHHHHHHHCSCEEEEEE
T ss_pred H---------hcc--CCCEEEEeccccccCCHHHHHHHH-HHHHHHHHcCCCeEEEEc
Confidence 0 013 78999999988755433 55566 777776655544 55543
No 186
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.16 E-value=7.8e-07 Score=71.55 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=28.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-----CC------CceEEEeec
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TV------RRTMHIVNL 38 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~------~G~i~i~~~ 38 (236)
+-++|+|+||||||||++.++|... |+ .|.+.++|.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~ 52 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE
Confidence 5689999999999999999999743 32 456777664
No 187
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.11 E-value=1.8e-06 Score=77.74 Aligned_cols=56 Identities=7% Similarity=-0.119 Sum_probs=41.0
Q ss_pred CC--CEEEEeCCCc-ccHHhHHHHHHHHHHHH-HhCCCcEEEEEecccccccchhhHhhhhH-HHHHH
Q 026569 98 DD--DYLVFDCPGQ-IELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFITDVTKFISGCM-ASLSA 160 (236)
Q Consensus 98 ~p--~~lllDEPt~-LD~~~~~~~~~~ll~~l-~~~~~~ii~v~l~d~~~~~d~~~~~~~~l-~~~~~ 160 (236)
+| ++.++|||+. .|+......+ ..++.+ .+.|.+++ +|.......+|+.+. .+..+
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~-~~l~~~~~~~g~ti~------sh~~~~~~~l~~~i~~~L~~G 199 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHL-EGLRKITSRGANTLE------MKAKKEEQAIIEKVYQYLTET 199 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCCSSCSSS------HHHHHHHHHHHHHHHHHHHTT
T ss_pred CcchhhhhchhhhHHHHHHHHHHHH-HHHHHHHHhcCCccc------cccHHHHHHHHHHHHHHhccC
Confidence 67 8899999998 9999988888 777777 55566642 577777777777666 34344
No 188
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.10 E-value=9.3e-06 Score=73.95 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=34.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (236)
.+++++|++|+||||++..|++.+...+.+|.+...|+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 478999999999999999999998877778999888874
No 189
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.07 E-value=0.00021 Score=56.05 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 190
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.05 E-value=1.2e-06 Score=82.23 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=31.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc-eEE-Eeec
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMH-IVNL 38 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G-~i~-i~~~ 38 (236)
.+++|+|+|||||||++++|+|.+.+.+| ++. ++|.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 57899999999999999999999999886 775 5543
No 191
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.05 E-value=3.6e-06 Score=78.20 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=33.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHh--CCcCCCceEEEeecCCCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAA 42 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g--~l~~~~G~i~i~~~d~~~ 42 (236)
.++|.|++||||||+++.|.. +.+++.+++.+...|+..
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 368999999999999999876 566777899998888864
No 192
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.3e-05 Score=63.59 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+-++|+|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999853
No 193
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.03 E-value=2.8e-06 Score=78.85 Aligned_cols=56 Identities=18% Similarity=0.049 Sum_probs=48.0
Q ss_pred hhcHH--HHHHHHHhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEeccccccc
Q 026569 82 EDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 82 ~~~~s--~~la~~l~~~~~p--~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~ 145 (236)
++|.. +.||++++. +| ++|||||||+ ||+.+...+. ++++++++ |.+|++|+ |...
T Consensus 399 SgG~~qrv~la~~l~~--~~~~~~lilDEp~~gld~~~~~~i~-~~l~~~~~-~~~vi~it----H~~~ 459 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD-TRQVLVVT----HLAQ 459 (517)
T ss_dssp CSSHHHHHHHHHHHHH--CCCSSEEEECSCSSSCCTHHHHHHH-HHHHHHHH-HSEEEEEC----CCHH
T ss_pred CHHHHHHHHHHHHHHh--CCCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHhC-CCEEEEEe----cCHH
Confidence 55544 899999999 99 9999999999 9999999999 99999977 88887774 6643
No 194
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.03 E-value=2.2e-06 Score=70.13 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
-.++|+||||||||||++.|.+.++
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999999865
No 195
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.03 E-value=1.8e-05 Score=74.87 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=30.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCC-ceEEEeec
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNL 38 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~-G~i~i~~~ 38 (236)
..++|+||||+||||++++|++++.+.. |.+.+.+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 3589999999999999999999998887 66666543
No 196
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.02 E-value=2.2e-06 Score=75.54 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=36.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~ 42 (236)
.+++|+|+||+||||+++.|++.+.+.+|+|.+.+.|+..
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 5789999999999999999999999999999999988854
No 197
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.01 E-value=4.2e-05 Score=61.88 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+-++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999854
No 198
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.99 E-value=1.3e-05 Score=68.68 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=58.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
..+.+.||+|+||||+++.+++.+....+.+...+..... ... ..-+.+|-.+.. . ..-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~------~~~---------~~~~l~g~~~~~-~----~~~~ 107 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM------EKH---------AVSRLIGAPPGY-V----GYEE 107 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC------STT---------HHHHHHCCCTTS-T----TTTT
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc------ccc---------cHHHhcCCCCcc-c----cccc
Confidence 4689999999999999999999988877877666533111 000 011122322110 0 0000
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHH
Q 026569 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~ 125 (236)
. ..+..++... ...++++||...+++..+..++ +++..
T Consensus 108 ~---~~~~~~~~~~-~~~vl~lDEi~~l~~~~~~~Ll-~~le~ 145 (311)
T 4fcw_A 108 G---GQLTEAVRRR-PYSVILFDAIEKAHPDVFNILL-QMLDD 145 (311)
T ss_dssp C---CHHHHHHHHC-SSEEEEEETGGGSCHHHHHHHH-HHHHH
T ss_pred c---chHHHHHHhC-CCeEEEEeChhhcCHHHHHHHH-HHHhc
Confidence 0 1223344431 4479999999889888777766 66554
No 199
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.98 E-value=0.00027 Score=57.18 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
.-++|+|+.|+|||||++.+.|-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 45899999999999999999874
No 200
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.97 E-value=3.5e-06 Score=68.05 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
..++|+|+|||||||+++.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999999
No 201
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.97 E-value=4.6e-06 Score=69.76 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeec
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~ 38 (236)
+++|+||||||||||++++++... .|.+.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~ 83 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 83 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence 589999999999999999999875 677776654
No 202
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.97 E-value=6.4e-06 Score=66.74 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
+.+++|+|++||||||+++.|++.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999999864
No 203
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.97 E-value=2e-05 Score=69.93 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=62.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
.++.|.||+|||||||+..++.......+.+.+....-. + + +. ..+.+|.....-..... ...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s-----~----~--~~-----~a~~~g~~~~~l~i~~~-~~~ 126 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-----L----D--PI-----YARKLGVDIDNLLCSQP-DTG 126 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-----C----C--HH-----HHHHTTCCGGGCEEECC-SSH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-----c----c--HH-----HHHHcCCChhheeeeCC-CCH
Confidence 468899999999999999888765545556665543211 1 0 00 13344443211000000 001
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcccH--H-----------hHHHHHHHHHHHH----HhCCCcEEEEE
Q 026569 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIEL--F-----------THVPVLRNFVDHL----KSRNFNVCAVY 137 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~LD~--~-----------~~~~~~~~ll~~l----~~~~~~ii~v~ 137 (236)
... ..+++.+....+++++++|+++.+-. . .+.+.+.+++++| ++.+.+|++++
T Consensus 127 e~~-~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~n 197 (356)
T 1u94_A 127 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 197 (356)
T ss_dssp HHH-HHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHH-HHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 112 44455554212799999999998332 1 1111222445544 34688887774
No 204
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.96 E-value=3.5e-05 Score=70.98 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..+.|.||+|+||||+++++++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458899999999999999999854
No 205
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.95 E-value=4.3e-06 Score=66.93 Aligned_cols=39 Identities=15% Similarity=0.022 Sum_probs=30.5
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecC
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (236)
|..+++|+|++|||||||++.+.+.+.+.+.++.....+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 346789999999999999999999877655555554444
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.94 E-value=8.3e-07 Score=77.86 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=29.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC----cCCCceEEEeec
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNL 38 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l----~~~~G~i~i~~~ 38 (236)
..+++.||||+|||||+++++|.+ .+.+|.+...+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~ 91 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG 91 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHH
Confidence 358899999999999999999987 666676655443
No 207
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.94 E-value=4.9e-06 Score=70.73 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeec
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~ 38 (236)
.++|+||||||||||++++++.+. .|.+.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~ 107 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 107 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred eEEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence 589999999999999999999875 677777654
No 208
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.93 E-value=3.8e-06 Score=66.98 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=30.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~ 37 (236)
+.+++|+|++||||||+++.+++.+.+.++.+.+.+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 357899999999999999999999888778775543
No 209
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.93 E-value=3.9e-06 Score=66.47 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=28.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEeec
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNL 38 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G--~i~i~~~ 38 (236)
+.+++|+|++||||||+++.+++.+.+ .| .+.+++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 357889999999999999999998866 45 4445543
No 210
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.93 E-value=5.9e-05 Score=57.85 Aligned_cols=88 Identities=20% Similarity=0.330 Sum_probs=53.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~ 83 (236)
-+.|.||+|+|||++.+.+.......++.+.++.-.... . .. . .
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~-------~-------------------~~---------~-~ 69 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDN-------A-------------------PQ---------L-N 69 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTT-------S-------------------SC---------H-H
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCc-------c-------------------hh---------h-h
Confidence 478999999999999999998765544444322211100 0 00 0 0
Q ss_pred cHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 84 ~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
-.+..+ +..+|++||...++...+..+. +.+... ..+..+|++.
T Consensus 70 ---~~~~~a-----~~g~l~ldei~~l~~~~q~~Ll-~~l~~~-~~~~~~I~~t 113 (145)
T 3n70_A 70 ---DFIALA-----QGGTLVLSHPEHLTREQQYHLV-QLQSQE-HRPFRLIGIG 113 (145)
T ss_dssp ---HHHHHH-----TTSCEEEECGGGSCHHHHHHHH-HHHHSS-SCSSCEEEEE
T ss_pred ---cHHHHc-----CCcEEEEcChHHCCHHHHHHHH-HHHhhc-CCCEEEEEEC
Confidence 111111 5679999999999988887777 555221 2345665554
No 211
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.92 E-value=6.1e-06 Score=72.19 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=23.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~ 29 (236)
..++|.||+|+|||||++.+++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 358899999999999999999977654
No 212
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.90 E-value=6.8e-06 Score=64.48 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.7
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHh
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g 24 (236)
|+.+++|.|++||||||+++.|+.
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 778899999999999999999997
No 213
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.90 E-value=0.00013 Score=64.22 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
.++.|.||+|||||||+..++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999885
No 214
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.87 E-value=3.4e-06 Score=68.79 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=30.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCc--eEEEee
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVN 37 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G--~i~i~~ 37 (236)
+.+++|+|++||||||+++.|++.+.|..| .+.+++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 357899999999999999999999887777 666654
No 215
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.86 E-value=7e-06 Score=66.27 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.+++|+|++||||||+++.|++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999875
No 216
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.84 E-value=7.1e-05 Score=66.68 Aligned_cols=117 Identities=14% Similarity=0.136 Sum_probs=64.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
.++.|.||+|||||||+..++.......+.+.+...+.... +. .++.+|+....-..... ...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-----------~~-----~a~~~g~d~~~l~i~~~-~~~ 137 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-----------PV-----YARALGVNTDELLVSQP-DNG 137 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-----------HH-----HHHHTTCCGGGCEEECC-SSH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-----------HH-----HHHHcCCCHHHceeecC-CcH
Confidence 46788999999999999888765444456777765442110 10 23445544221000000 011
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcccH----H---------hHHHHHHHHHHHHH----hCCCcEEEEE
Q 026569 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIEL----F---------THVPVLRNFVDHLK----SRNFNVCAVY 137 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~LD~----~---------~~~~~~~~ll~~l~----~~~~~ii~v~ 137 (236)
... .++++.+....+++++++|..+.+-+ . .+...+.+++++|+ +.+.++++++
T Consensus 138 e~~-l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 138 EQA-LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp HHH-HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HHH-HHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 122 44555555322789999999998321 0 12222336666663 4577777664
No 217
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.84 E-value=5.5e-05 Score=66.13 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~ 28 (236)
.+.|.||+|+||||+++.+...+..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999987643
No 218
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.83 E-value=6.8e-06 Score=74.44 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=43.7
Q ss_pred hhhcHH--HHHHHHHhcC--CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 81 LEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 81 ~~~~~s--~~la~~l~~~--~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
+++|++ ++||++++.. .+|+++|||||++ ||+..+..+. ++++++.+.+.+++++.
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~~ii~t 394 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHRNPDLQFIVIS 394 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHCBTTBEEEEEC
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHH-HHHHHHhcCCCEEEEEE
Confidence 455543 7888888831 1799999999999 9999999999 88888865566776663
No 219
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.82 E-value=4.1e-06 Score=74.54 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=37.6
Q ss_pred hhhhcHH--HHHHHHHh---------cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026569 80 HLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 80 ~~~~~~s--~~la~~l~---------~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
.+++|++ ++||++++ . +|+++|||||++ ||+..+..++ ++++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~--~p~iLLLDEp~s~LD~~~~~~l~-~~l~~~ 320 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFG--EDPVLLLDDFTAELDPHRRQYLL-DLAASV 320 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHS--SCCEEEECCGGGCCCHHHHHHHH-HHHHHS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccC--CCCEEEEeCccccCCHHHHHHHH-HHHHhc
Confidence 4566654 89999999 7 999999999999 9999999888 777765
No 220
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.81 E-value=3.7e-05 Score=66.74 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=25.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc-CCCceEEE
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHI 35 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-~~~G~i~i 35 (236)
..+.|.||+|+|||+|+++++..+. ..+.++.+
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~ 186 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTL 186 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEE
Confidence 4678999999999999999998665 43334443
No 221
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.81 E-value=0.00026 Score=65.64 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=31.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
.+++|+|++||||||++..|+..+...+-+|.+...|+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 47899999999999999999977765555688877775
No 222
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.79 E-value=0.00014 Score=63.26 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.++.|.||+|||||||+..++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 468899999999999999988753
No 223
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.79 E-value=1.2e-05 Score=62.53 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+.+|+|||||||||++.+|.-.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999843
No 224
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.76 E-value=0.00017 Score=60.89 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..+.|.||+|+||||+++++++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 358899999999999999999865
No 225
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.76 E-value=4.5e-05 Score=63.61 Aligned_cols=115 Identities=11% Similarity=-0.033 Sum_probs=61.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHH-h
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME-H 80 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~-~ 80 (236)
+..+.+.|+.|+||||++-.++..+...+-+|.+...|+... .+.+...-++........... .
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~---------------~~~~al~~gl~~~~~~~~~~~~~ 70 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGR---------------AETEALLNGLPQQPLLRTEYRGM 70 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTC---------------HHHHHHHTTSCBCCCEEEEETTE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCC---------------hhHHHHhcCccccCcceeecCCc
Confidence 456889999999999997777766554444787777776321 111111122322110000000 0
Q ss_pred hhhcHHHHHHHHHhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026569 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lllDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
.... ..+..++.. .|+++|+|||+. .+.......+ +.+..+...|..++.+
T Consensus 71 ~~~e--~~l~~~L~~--~pdlvIVDElG~~~~~~~r~~~~~-qDV~~~l~sgidVitT 123 (228)
T 2r8r_A 71 TLEE--MDLDALLKA--APSLVLVDELAHTNAPGSRHTKRW-QDIQELLAAGIDVYTT 123 (228)
T ss_dssp EEEE--CCHHHHHHH--CCSEEEESCTTCBCCTTCSSSBHH-HHHHHHHHTTCEEEEE
T ss_pred cccc--ccHHHHHhc--CCCEEEEeCCCCCCcccchhHHHH-HHHHHHHcCCCCEEEE
Confidence 0010 112233446 899999999984 4533333344 4444455668777654
No 226
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.75 E-value=2.1e-05 Score=69.98 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 026569 4 AQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g 24 (236)
+++|+|||||||||++++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 789999999999999999998
No 227
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.74 E-value=2e-05 Score=65.57 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=29.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~ 36 (236)
+..++|.||+||||||+++.|++.+.+ .+.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 457899999999999999999999988 7777554
No 228
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.74 E-value=1.7e-05 Score=62.36 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=23.7
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
|+.++.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357889999999999999999998764
No 229
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.70 E-value=4.8e-05 Score=68.83 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~ 29 (236)
-+++|+|||||||||++++|++++.+.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 468999999999999999999987664
No 230
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.69 E-value=1.1e-05 Score=71.44 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+.++++|++|+|||||++.++|..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999864
No 231
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=2.2e-05 Score=63.35 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|+||+||||||+.+.|++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468899999999999999999875
No 232
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.67 E-value=2.2e-05 Score=61.00 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.++|+||+||||||+++.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998764
No 233
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.66 E-value=5.8e-05 Score=57.81 Aligned_cols=42 Identities=10% Similarity=-0.012 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecc
Q 026569 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (236)
Q Consensus 98 ~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (236)
+..++++||...+....+..+. +++.+..+.+..+|++.-.+
T Consensus 75 ~~~~l~lDei~~l~~~~q~~Ll-~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRNIQTGIT-FIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECTTCCHHHHHHHH-HHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChHHCCHHHHHHHH-HHHHhCCCCCEEEEEecCCC
Confidence 5679999999999888887777 66666533456666654333
No 234
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.66 E-value=2.4e-05 Score=62.40 Aligned_cols=38 Identities=18% Similarity=0.083 Sum_probs=31.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
.+++|+|++||||||++..+.+.++..+-+|.+...++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 57899999999999999999998876555676665554
No 235
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.65 E-value=4e-05 Score=59.49 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=22.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+.++|+|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999999864
No 236
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.64 E-value=2.4e-05 Score=63.34 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
.+++|+||+||||||+++.|...++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 5789999999999999999998764
No 237
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.63 E-value=7.9e-05 Score=62.81 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++++|+.|+|||||++.+.|
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999997
No 238
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.63 E-value=2.6e-05 Score=60.34 Aligned_cols=20 Identities=40% Similarity=0.590 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCcHHHHHHHH
Q 026569 3 YAQLVIGPAGSGKSTYCSSL 22 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l 22 (236)
.+++|.||+||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46889999999999999999
No 239
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.63 E-value=3e-05 Score=61.37 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=21.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+..++|+|++||||||+++.|+..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998643
No 240
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.63 E-value=3e-05 Score=62.32 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
|+.+++|.|++||||||+++.+++.+
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 66689999999999999999999854
No 241
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.61 E-value=0.001 Score=58.49 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
-++|+|..|+|||||++.+.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 242
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.59 E-value=1.5e-05 Score=66.85 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+.+++|.||+||||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999654
No 243
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.59 E-value=4e-05 Score=62.49 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHh
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+.+++|.|++||||||+++.|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999998
No 244
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.58 E-value=4.9e-05 Score=69.04 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=28.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc------------CCCceEEEeec
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE------------TVRRTMHIVNL 38 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~------------~~~G~i~i~~~ 38 (236)
+-++|+|+||+|||||++.+.|... +..|.+.++|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 4689999999999999999999854 45567776664
No 245
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.58 E-value=0.00011 Score=64.86 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=29.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (236)
-.+.|.|++|+|||||+..++......++.|.+....
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3578999999999999999988765566777776543
No 246
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.58 E-value=4.8e-05 Score=60.83 Aligned_cols=30 Identities=27% Similarity=0.152 Sum_probs=25.0
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~ 36 (236)
+.+++|+|++||||||+++.|+.. |-..++
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEc
Confidence 367999999999999999999985 555554
No 247
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.58 E-value=5.5e-05 Score=66.75 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=57.0
Q ss_pred CCEEEEeCCCcccHHh-HHHHHHHHHHHHHhCCCcEEEEEecccccc--cchhhHhhhhHHHHHHHH--hhCCCeeeecc
Q 026569 99 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILS 173 (236)
Q Consensus 99 p~~lllDEPt~LD~~~-~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~--~d~~~~~~~~l~~~~~~i--~~~~p~i~vls 173 (236)
.++.|.|.|+..+... ...+...+++.+.+.. +++|++|+... .++..-+..++..+...- ..+.|.+.|+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d---~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N 282 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR---VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 282 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC---EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhcc---EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 4688999998644211 1122224455554322 24455666543 233332222222221111 24789999999
Q ss_pred ccccccchhhhhh---hcccChHHHHHHhhhccchhHHHHHHHHHHHHhhC
Q 026569 174 KMDLVTNKKEIED---YLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY 221 (236)
Q Consensus 174 k~dll~~~~~l~~---~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~ 221 (236)
|+|+......++. .+......+ ......+....+|-..+.+.+...
T Consensus 283 K~Dl~~~~e~~~~l~~~l~~~~~v~--~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 283 KMDMPEAAENLEAFKEKLTDDYPVF--PISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp CTTSTTHHHHHHHHHHHCCSCCCBC--CCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred CccCCCCHHHHHHHHHHhhcCCCEE--EEECCCCcCHHHHHHHHHHHHhhC
Confidence 9999864322221 111000000 011123344677778888877654
No 248
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.57 E-value=2.9e-05 Score=65.23 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=27.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeec
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~ 38 (236)
+..++++|++||||||+.+.|++.+. .+.+.+++-
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D 66 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGD 66 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecH
Confidence 46789999999999999999998764 244555553
No 249
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.57 E-value=3.4e-05 Score=60.68 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.++|+||+||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998754
No 250
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.57 E-value=0.00017 Score=70.45 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~ 28 (236)
..++|.|||||||||+++++++.+..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999998743
No 251
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.56 E-value=4.2e-05 Score=60.48 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=22.7
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
|..+++|+|++||||||+++.++..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 252
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.56 E-value=0.0002 Score=60.86 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..+.|.||+|+||||+++++++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468899999999999999999865
No 253
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.56 E-value=3.5e-05 Score=60.99 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.2
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
|+.+++|+|++||||||+.+.|+..+
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 66679999999999999999998743
No 254
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.55 E-value=1e-05 Score=65.53 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i 35 (236)
+++|.|++||||||+++.|...+.....++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~ 33 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 57899999999999999999988765445543
No 255
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.55 E-value=4.2e-05 Score=68.05 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
.++|+|++|||||||++.++|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999999754
No 256
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.54 E-value=3.9e-05 Score=64.82 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+..++|+|++||||||+++.|++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999865
No 257
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=4.9e-05 Score=60.15 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+..++|+|++||||||+++.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998643
No 258
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.54 E-value=4.5e-05 Score=59.49 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
|...++|+|++||||||+.+.|+..+
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 55578999999999999999998754
No 259
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.53 E-value=4.2e-05 Score=60.45 Aligned_cols=26 Identities=27% Similarity=0.522 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~ 28 (236)
+-++|+|++|+|||||++.++|...+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC---
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 56899999999999999999986433
No 260
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.53 E-value=5e-05 Score=60.25 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+..+.|+|++||||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999998754
No 261
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.53 E-value=4.5e-05 Score=62.14 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 57899999999999999987543
No 262
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.52 E-value=0.00066 Score=56.27 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.+.|.||+|+||||+++.++..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999864
No 263
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.51 E-value=0.0012 Score=60.00 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=33.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeecCCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPA 41 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-~G~i~i~~~d~~ 41 (236)
.+++++|++|+||||++..|+..+... +.+|.+...|+.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 578889999999999999999888776 678998888864
No 264
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.51 E-value=5.4e-05 Score=59.82 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
+..++|.|++||||||+++.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999988654
No 265
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=9.8e-05 Score=64.04 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCc
Q 026569 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
+.+.||+|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999764
No 266
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.50 E-value=0.00011 Score=65.18 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=37.2
Q ss_pred HHHHHHhcCCC-CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026569 88 WLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 88 ~la~~l~~~~~-p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
++|+++.. + |+++|||||++ ||+..+..+. ++++++.+ +.++++++
T Consensus 296 a~a~~l~~--~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~-~~~vi~~t 343 (371)
T 3auy_A 296 AIANALIG--NRVECIILDEPTVYLDENRRAKLA-EIFRKVKS-IPQMIIIT 343 (371)
T ss_dssp HHHHHHHS--SCCSEEEEESTTTTCCHHHHHHHH-HHHHHCCS-CSEEEEEE
T ss_pred HHHHHHhc--CCCCeEEEeCCCCcCCHHHHHHHH-HHHHHhcc-CCeEEEEE
Confidence 56778887 8 99999999999 9999999999 88887643 45666554
No 267
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.49 E-value=5e-05 Score=67.96 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i 35 (236)
.+++|+||||||||||+++++|.. +|.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 478999999999999999999953 576654
No 268
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.49 E-value=5.2e-05 Score=63.84 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|+||+||||||+.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 367899999999999999999854
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.49 E-value=5.7e-05 Score=59.73 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.7
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
...++++||+||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999998754
No 270
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.49 E-value=5.6e-05 Score=59.41 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|++|+|||||++.++|-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999974
No 271
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.48 E-value=0.0001 Score=61.28 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=24.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~ 36 (236)
.++.+.||.||||||++..++.-+...+.+|.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5788999999999998776665544444466665
No 272
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.48 E-value=4.6e-05 Score=60.76 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+.+++|+|++||||||+++.|+..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998754
No 273
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.47 E-value=5.6e-05 Score=68.00 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=27.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC-----------CcCCCceEEEee
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRH-----------CETVRRTMHIVN 37 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~-----------l~~~~G~i~i~~ 37 (236)
..-++|+|+||+|||||++.++|. +.|..|.+.+.+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 356899999999999999999997 556666666543
No 274
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.46 E-value=6.3e-05 Score=60.06 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
.++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999998653
No 275
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.46 E-value=9.1e-05 Score=59.45 Aligned_cols=32 Identities=31% Similarity=0.285 Sum_probs=25.9
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEE
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~ 34 (236)
+..++|.|++||||||+++.|+..+... |.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~ 35 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK-RDVY 35 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT-SCEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc-CCEE
Confidence 3678999999999999999999876553 3443
No 276
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.45 E-value=2.9e-05 Score=72.58 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=30.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~ 37 (236)
.+++++||||+||||+++++++.+.+..|.|.+.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 36899999999999999999999987777776554
No 277
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.43 E-value=7.7e-05 Score=58.46 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+-++|+|++|+|||||++.++|..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999853
No 278
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.43 E-value=0.00011 Score=65.33 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=22.8
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHh
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g 24 (236)
|..-++|+|.+|+|||||++.++|
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 777899999999999999999998
No 279
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.41 E-value=0.00055 Score=59.90 Aligned_cols=117 Identities=12% Similarity=0.142 Sum_probs=60.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHh-CCcC-CCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026569 4 AQLVIGPAGSGKSTYCSSLYR-HCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g-~l~~-~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
++.|.||+|||||||+-.++- ..+. ..|.+.+..-. + .+ + . ..++.+|+....-.... ..-
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E---~--s~----~--~-----~ra~~lGvd~d~llv~~-~~~ 92 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE---F--GI----T--P-----AYLRSMGVDPERVIHTP-VQS 92 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS---C--CC----C--H-----HHHHHTTCCGGGEEEEE-CSB
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc---c--hh----h--H-----HHHHHhCCCHHHeEEEc-CCC
Confidence 578999999999999655543 3332 14555554311 0 01 0 0 13566776643211111 001
Q ss_pred hhcHHHHHHHHH--hcCCCCCEEEEeCCCcccH-------------H--hHHHHHHHHHHH----HHhCCCcEEEEE
Q 026569 82 EDNLDDWLAEEL--DNYLDDDYLVFDCPGQIEL-------------F--THVPVLRNFVDH----LKSRNFNVCAVY 137 (236)
Q Consensus 82 ~~~~s~~la~~l--~~~~~p~~lllDEPt~LD~-------------~--~~~~~~~~ll~~----l~~~~~~ii~v~ 137 (236)
.+.+..+++..+ +...+|+++++|-.+++=+ . .+.+.+.+.+++ +++.+.+++++.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 111113444454 3323799999999887311 0 233333244444 345788888884
No 280
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.41 E-value=0.00011 Score=64.78 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.9
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
|+.+++|+||+||||||+.+.|+..+.
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC
Confidence 456899999999999999999998764
No 281
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.41 E-value=8e-05 Score=61.67 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.0
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+.+++|+|++||||||+++.|++.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999743
No 282
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.40 E-value=8.9e-05 Score=63.32 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.5
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHh
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g 24 (236)
|+..+.|+|++||||||+.+.|+.
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 778899999999999999999997
No 283
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.39 E-value=8.1e-05 Score=66.36 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=30.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~ 37 (236)
..++|+||+||||||+++.+.+...+.++.|.+.+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 35789999999999999999998888888888754
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.39 E-value=8.4e-05 Score=58.69 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~ 28 (236)
.++|.|++||||||+++.|+..+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999987653
No 285
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.37 E-value=0.0018 Score=56.27 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..+.|.||+|+||||++++++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 468899999999999999999865
No 286
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.36 E-value=0.00012 Score=58.68 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+..++|.|+.||||||+++.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999987
No 287
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.35 E-value=0.00011 Score=58.53 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
..++|+|++||||||+++.|+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999985
No 288
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.34 E-value=9.6e-05 Score=63.46 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=25.5
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~ 36 (236)
+..+.|.||+||||||+++.+...+. .+.+.+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is 65 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVID 65 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEe
Confidence 46789999999999999999987543 2445544
No 289
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.33 E-value=0.0001 Score=59.51 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 026569 5 QLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~l 26 (236)
++|+||+|||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5799999999999999987643
No 290
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.33 E-value=0.00011 Score=59.11 Aligned_cols=26 Identities=31% Similarity=0.212 Sum_probs=22.7
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
+..++|.|+.||||||+++.|+..+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999997653
No 291
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=4.9e-05 Score=66.38 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=28.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecC
Q 026569 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (236)
+.+.||+|+||||+++++++.+.+..+.+.+.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 78999999999999999999987776665555544
No 292
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.33 E-value=0.00012 Score=58.75 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.9
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+..++|+|++||||||+++.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998754
No 293
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.31 E-value=0.00017 Score=70.08 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~ 28 (236)
.++|+||+||||||++..+.+...+
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~~~~ 135 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLFDEM 135 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5789999999999998888665433
No 294
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.31 E-value=0.00067 Score=71.70 Aligned_cols=119 Identities=15% Similarity=0.160 Sum_probs=65.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
.++.|.||+|+|||||+..+.--.....+++.+.... +.+.... ++.+|+.-..-...+.+ ..
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e---------------~~~~~l~-a~~~G~dl~~l~v~~~~-~~ 1490 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE---------------HALDPIY-ARKLGVDIDNLLCSQPD-TG 1490 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT---------------SCCCHHH-HHHTTCCTTTCEEECCS-SH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc---------------cccCHHH-HHHcCCCchhceeecCC-hH
Confidence 5788999999999999988876544455666665321 0000111 44445332111111100 11
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcccHHh-------------H----HHHHHHHHHHHHhCCCcEEEEEec
Q 026569 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-------------H----VPVLRNFVDHLKSRNFNVCAVYLL 139 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~-------------~----~~~~~~ll~~l~~~~~~ii~v~l~ 139 (236)
... .++++.++....|+++++||-.++-+.. + .+.+.++...+.+.+.++++++..
T Consensus 1491 E~~-l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1491 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1563 (2050)
T ss_dssp HHH-HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECE
T ss_pred HHH-HHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccc
Confidence 122 4555555432389999999997633321 2 223435555555678888777543
No 295
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.31 E-value=0.00012 Score=58.12 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.+++|+|++||||||+++.|+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998754
No 296
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.31 E-value=0.0016 Score=56.35 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
.++.|.||+|||||||+..++.
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999998875
No 297
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.31 E-value=0.00015 Score=67.14 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=30.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
..++|+||||+|||||++++++... .+.+.+++.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 3589999999999999999999875 67788877553
No 298
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.31 E-value=0.00011 Score=63.37 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|+|++|+|||||++.+.|.-
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999963
No 299
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.30 E-value=0.00013 Score=57.58 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|+|++||||||+++.++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 457899999999999999998653
No 300
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.30 E-value=0.00088 Score=56.01 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~ 36 (236)
.+.|.||+|+|||++++.+........+.+...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v 63 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE
Confidence 478999999999999999999876544444433
No 301
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.28 E-value=0.00014 Score=60.77 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.7
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
.++++|.|++||||||+++.|+..+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 36899999999999999999988543
No 302
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.28 E-value=0.00014 Score=60.79 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
.+.|.||+|+||||+++++++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999764
No 303
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.27 E-value=0.00014 Score=57.69 Aligned_cols=25 Identities=36% Similarity=0.235 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~ 28 (236)
.++|.|+.||||||+++.|...++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999987644
No 304
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.26 E-value=0.00098 Score=57.49 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=23.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCce
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~ 32 (236)
.+.|.||+|+|||++++.+........+.
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~ 55 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDRP 55 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSSC
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCCC
Confidence 57899999999999999999865443333
No 305
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.25 E-value=0.00016 Score=58.68 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.++|+||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999997643
No 306
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.24 E-value=0.00017 Score=58.42 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
++++|+|+.||||||+.+.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999975
No 307
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.23 E-value=0.00017 Score=57.05 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
.++|.|+.||||||+++.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998653
No 308
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.23 E-value=0.00018 Score=57.65 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|+|++||||||+++.|+..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998654
No 309
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.23 E-value=0.0022 Score=61.59 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.9
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
.+-++|+|+.|+|||||++.+.|.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999985
No 310
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.20 E-value=0.00019 Score=59.40 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
-++.|+||+||||||.++.|+..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998754
No 311
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.20 E-value=0.00017 Score=58.53 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.++|+||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36889999999999999997654
No 312
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.19 E-value=0.00019 Score=58.77 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
++.|+||+||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999754
No 313
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.18 E-value=0.00019 Score=57.76 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
+..++|.|+.||||||+++.|+..+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999997654
No 314
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.18 E-value=0.00012 Score=57.58 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=17.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|.|++||||||+.+.|+..+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999998654
No 315
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.18 E-value=0.00019 Score=58.67 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|+||+||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999998764
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.17 E-value=0.00024 Score=53.84 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.8
Q ss_pred CC-eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 1 MG-YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 1 ~~-~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
|+ +-++++|+.|+|||||++.+.+-
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhC
Confidence 54 56899999999999999999874
No 317
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.17 E-value=0.00027 Score=53.75 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++++|++|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 6789999999999999999986
No 318
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.17 E-value=0.00025 Score=62.54 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=33.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~ 42 (236)
...++|+|++|+|||||+..+++.+...+.+|.+...||..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~ 119 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSS 119 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC---
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 36799999999999999999998877667788888888754
No 319
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.17 E-value=0.00022 Score=55.23 Aligned_cols=23 Identities=43% Similarity=0.323 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 320
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.16 E-value=0.00024 Score=56.46 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++++|++|+|||||++.+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999997
No 321
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.15 E-value=0.00025 Score=56.75 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++++|++|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999986
No 322
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.14 E-value=0.00023 Score=60.84 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
++++|.|++||||||+++.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999985
No 323
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.14 E-value=0.00025 Score=62.05 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.6
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
|+..++|+||+||||||+.+.|+..+.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 556899999999999999999998653
No 324
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.14 E-value=0.00024 Score=57.89 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|+|++||||||+++.|+..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999998764
No 325
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.14 E-value=0.00023 Score=58.43 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|+|++||||||+++.|+..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999998754
No 326
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.14 E-value=0.00031 Score=56.88 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=28.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
..++|+|+.|||||||++.+.+..... .++.+.+.++
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence 568999999999999999999875433 4555555443
No 327
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.13 E-value=0.00025 Score=55.17 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.+++|+|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998754
No 328
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.13 E-value=0.00026 Score=59.06 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|+||+||||||+++.|+..+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998654
No 329
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.13 E-value=7.1e-05 Score=64.44 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=19.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
+.+++|.||+||||||+++.+...+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999988553
No 330
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.12 E-value=0.0002 Score=63.51 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=22.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCc
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G 31 (236)
+-++|+|++|+|||||++.|.|......+
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC----
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 55899999999999999999886544433
No 331
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.11 E-value=0.0025 Score=55.17 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=25.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~ 37 (236)
-.+.|.|++|+|||||+..++.......+.+.+..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 46889999999999999988754333334555544
No 332
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.11 E-value=0.0003 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|||||||++.+.+-
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 333
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0056 Score=55.11 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
-++.+-||+|+|||++.+++++...
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhC
Confidence 4688999999999999999999653
No 334
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.10 E-value=0.00027 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
.-++++|+.|+|||||++.+.+-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34789999999999999999974
No 335
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.08 E-value=0.00036 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|+|||||++.+.+-
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 66899999999999999999863
No 336
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.07 E-value=0.0027 Score=58.54 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..+.|.||+|+|||+++++++...
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CcEEEECcCCCCHHHHHHHHHHHh
Confidence 358899999999999999998864
No 337
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.06 E-value=0.0022 Score=58.17 Aligned_cols=37 Identities=11% Similarity=0.236 Sum_probs=27.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeecC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLD 39 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-~G~i~i~~~d 39 (236)
-.+.|.|++|+|||||+..++...... +..|.+....
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 467899999999999999988765443 3456665443
No 338
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.06 E-value=0.00031 Score=57.66 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 339
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.05 E-value=0.0029 Score=55.06 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~ 28 (236)
..+.|.||+|+||||+++.++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45789999999999999999986643
No 340
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.04 E-value=0.00039 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++++|+.|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999999987
No 341
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.04 E-value=0.00038 Score=58.59 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
..+.|+|++||||||+.+.|+..+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999998643
No 342
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.03 E-value=0.00038 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.+-
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 56899999999999999999864
No 343
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.03 E-value=0.00039 Score=52.89 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|+|||||++.+.+-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 344
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.03 E-value=0.00025 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|++|+|||||++.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 45799999999999999999764
No 345
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.02 E-value=0.00032 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 346
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.02 E-value=0.0004 Score=53.75 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|||||||++.+.+-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 347
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.01 E-value=0.00042 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999875
No 348
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.01 E-value=0.00031 Score=57.02 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 026569 5 QLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~l 26 (236)
++|+|++||||||+++.|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998754
No 349
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.00 E-value=0.00044 Score=53.49 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.+-
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 350
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.99 E-value=0.00043 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|++|+|||||++.+.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999864
No 351
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.99 E-value=0.00014 Score=67.49 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+.+|+|+||||||||+.+|..+
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6789999999999999999765
No 352
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.99 E-value=0.00044 Score=52.78 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 353
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.99 E-value=0.00045 Score=52.92 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999875
No 354
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.99 E-value=0.00045 Score=53.37 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 355
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.99 E-value=0.00042 Score=59.05 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.+.++++|++|+|||||++.++|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 3568999999999999999999853
No 356
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.98 E-value=0.00038 Score=56.48 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+.+++|+|++||||||+.+.++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998854
No 357
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.97 E-value=0.00035 Score=61.92 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLY 23 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~ 23 (236)
-+.+|+|||||||||++.+|+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999987
No 358
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.97 E-value=0.00036 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 359
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.96 E-value=0.0004 Score=54.71 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 360
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.95 E-value=0.00052 Score=53.90 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 568999999999999999999863
No 361
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.95 E-value=0.0019 Score=56.56 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
..+.|.||+|+|||||+..++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 34689999999999999999764
No 362
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.95 E-value=0.00078 Score=53.19 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.+-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999877653
No 363
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.95 E-value=0.0004 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.+-
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 364
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.95 E-value=0.00052 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999976
No 365
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.94 E-value=0.00048 Score=52.53 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++++|+.|+|||||++.+.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999999987
No 366
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.94 E-value=0.00049 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999875
No 367
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.93 E-value=0.00049 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 368
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.92 E-value=0.0085 Score=58.10 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
-++|+|..+||||||+++|.|.-
T Consensus 53 ~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHHSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999963
No 369
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.92 E-value=0.00045 Score=59.35 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
.++.|.||+|+||||+++++++.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4688999999999999999999753
No 370
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.92 E-value=0.0004 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.+-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 35789999999999999999874
No 371
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.91 E-value=0.00049 Score=56.09 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|+|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998765
No 372
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.91 E-value=0.0003 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999998864
No 373
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.89 E-value=0.00052 Score=52.30 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 026569 4 AQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g 24 (236)
-++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999976
No 374
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.89 E-value=0.00064 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.+-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 375
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.89 E-value=0.00052 Score=52.91 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999863
No 376
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.88 E-value=0.0006 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999884
No 377
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.88 E-value=0.00062 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 378
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.87 E-value=0.00062 Score=53.46 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999873
No 379
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.86 E-value=0.00063 Score=53.08 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999974
No 380
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.86 E-value=0.00062 Score=57.78 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=22.2
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
++-++++|++|||||||++.+.|-
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999885
No 381
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.86 E-value=0.00072 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~ 28 (236)
+-++|+|++|+|||||++.+.|....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccc
Confidence 45899999999999999999986543
No 382
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.85 E-value=0.0026 Score=54.92 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.+.|.||+|+||||+++.++...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 57899999999999999998764
No 383
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.85 E-value=0.00069 Score=54.96 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=26.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (236)
+.++|+|+.|+|||||++.+.+..... ..+...+.+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d 74 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGD 74 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECC
Confidence 578999999999999999998765443 344444444
No 384
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.84 E-value=0.00066 Score=52.68 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
.+.|.||+|+||||+++.++..+.
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988653
No 385
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.84 E-value=0.00069 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56899999999999999999964
No 386
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.83 E-value=0.0007 Score=52.38 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|+|||||++.+.+-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 387
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.83 E-value=0.00062 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 388
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.001 Score=54.46 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=23.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh-CCcCCCceEEEeec
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNL 38 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g-~l~~~~G~i~i~~~ 38 (236)
..+.|.|++|+|||||+..++- ......+.+.+...
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4688999999999999876542 12222345655543
No 389
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.81 E-value=0.00069 Score=55.80 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|+|+.||||||+++.|+..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998765
No 390
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.80 E-value=0.00071 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|++|+|||||++.+.+-
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999873
No 391
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.80 E-value=0.00078 Score=58.68 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.0
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+..++|+||+|||||||...++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3478999999999999999999765
No 392
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.80 E-value=0.00072 Score=52.69 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 393
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.79 E-value=0.00079 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999854
No 394
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.79 E-value=0.00079 Score=53.50 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+-++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 568999999999999999998753
No 395
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.78 E-value=0.00079 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 396
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.78 E-value=0.00071 Score=53.05 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|++|+|||||++.+.+-
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 397
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.76 E-value=0.0028 Score=66.20 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=28.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEee
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~ 37 (236)
-.+.|.||+|+|||||+..++.......+.+.+..
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 46889999999999999999887766666776654
No 398
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.76 E-value=0.00083 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++|+|+.|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 5689999999999999999987
No 399
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.75 E-value=0.00086 Score=52.72 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 400
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.75 E-value=0.00074 Score=59.85 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
.++|+||+||||||+.++|++.+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 488999999999999999998754
No 401
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.75 E-value=0.00072 Score=56.46 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.|-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999999985
No 402
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.74 E-value=0.0009 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|++|+|||||++.+.+-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999863
No 403
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.74 E-value=0.00081 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
.+.|.||+|+||||+++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 678999999999999999987654
No 404
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.74 E-value=0.0009 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 405
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.74 E-value=0.0007 Score=57.01 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
-++++|++|||||||++.+.|-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999886
No 406
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.74 E-value=0.00086 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|||||||++.+.|-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999974
No 407
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.00092 Score=52.46 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++++|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999986
No 408
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.00089 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 55899999999999999999874
No 409
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.72 E-value=0.0031 Score=55.58 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=19.9
Q ss_pred eEEE--EcCCCCcHHHHHHHHHhCCc
Q 026569 4 AQLV--IGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 4 ~~~i--iGpnGsGKSTLl~~l~g~l~ 27 (236)
.+.| .||+|+|||||++.+.....
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 3555 89999999999999987654
No 410
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.71 E-value=0.00092 Score=54.89 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=27.4
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i 35 (236)
+..+++.|+.||||||+++.+...+....-++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 3568899999999999999999988765445543
No 411
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.71 E-value=0.0008 Score=52.30 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++|+|++|+|||||++.+.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5689999999999999999984
No 412
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.70 E-value=0.0021 Score=52.53 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=33.5
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (236)
|+ ++|.|..|+||||+.-.++..+...+.+|.+...|+.
T Consensus 1 mk--I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 1 MK--LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp CE--EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred CE--EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 55 4558999999999999999988877779999999985
No 413
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.70 E-value=0.001 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 414
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.69 E-value=0.00098 Score=56.11 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|++|+|||||++.++|-
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 56899999999999999999984
No 415
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.69 E-value=0.00075 Score=57.09 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.|.+-
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 66899999999999999998763
No 416
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.69 E-value=0.00067 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999998653
No 417
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.69 E-value=0.0011 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999873
No 418
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.69 E-value=0.0012 Score=57.62 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+.+++|.||+|||||||...++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3678999999999999999999865
No 419
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.68 E-value=0.00099 Score=52.54 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 56899999999999999999874
No 420
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.68 E-value=0.0014 Score=53.23 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=18.7
Q ss_pred CCeeEEEEcCCCCcHHHHHHHH
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSL 22 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l 22 (236)
|..++.+.|++||||||++..+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHH
Confidence 4567889999999999998764
No 421
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.67 E-value=0.00089 Score=52.34 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999974
No 422
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.67 E-value=0.0011 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999874
No 423
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.67 E-value=0.0011 Score=51.39 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 424
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.66 E-value=0.0064 Score=64.44 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=64.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
-++.|.||+|+|||||+..++.......+.+.+....-.. .+. ..+.+|+....-..... ...
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~-----------~~~-----~a~~lGvd~~~L~I~~~-~~~ 446 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-----------DPI-----YARKLGVDIDNLLCSQP-DTG 446 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC-----------CHH-----HHHHTTCCTTTCEEECC-SSH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCH-----------HHH-----HHHHcCCCHHHeEEeCC-CCH
Confidence 4688999999999999998887665555666665432111 011 14455554321111110 011
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcccH--H-----------hHHHHHHHHHHHH----HhCCCcEEEEE
Q 026569 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIEL--F-----------THVPVLRNFVDHL----KSRNFNVCAVY 137 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~LD~--~-----------~~~~~~~~ll~~l----~~~~~~ii~v~ 137 (236)
..+ ..+++.+....+|+++++|....+-+ . .+...+.+.+++| ++.+.+++++.
T Consensus 447 e~i-l~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlin 517 (2050)
T 3cmu_A 447 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 517 (2050)
T ss_dssp HHH-HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHH-HHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 122 34445444222899999999988432 0 1222222556665 35688887764
No 425
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.66 E-value=0.0011 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 426
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.66 E-value=0.0011 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 427
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.66 E-value=0.00074 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999998864
No 428
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.66 E-value=0.00076 Score=52.34 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~ 28 (236)
.+.|.||+|+||||+++.++..+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999887643
No 429
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.65 E-value=0.001 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999873
No 430
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.65 E-value=0.001 Score=52.93 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 45899999999999999999974
No 431
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.0012 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999873
No 432
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.64 E-value=0.0012 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 433
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.0066 Score=52.88 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
-.+.|.||+|+|||++++.++.-+.
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998764
No 434
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.63 E-value=0.0011 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 435
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.63 E-value=0.0011 Score=54.10 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999873
No 436
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.62 E-value=0.00084 Score=53.15 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++|+|+.|+|||||++.+.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999976
No 437
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.62 E-value=0.0013 Score=53.60 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=26.3
Q ss_pred CCeeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEE
Q 026569 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i 35 (236)
|...++|=|+-||||||.++.|...+.. +..+..
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~ 34 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 34 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEE
Confidence 7666789999999999999999998753 344443
No 438
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.62 E-value=0.0011 Score=57.33 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
..++|+|++|+|||||++.+.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999999974
No 439
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.62 E-value=0.0011 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.+-
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998874
No 440
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.62 E-value=0.00077 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|++|+|||||++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999873
No 441
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.61 E-value=0.00071 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
-++.+.||+|+||||++.+++..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999875
No 442
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.61 E-value=0.001 Score=57.45 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
.++|+|++|+|||||++.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 443
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.61 E-value=0.00096 Score=59.37 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+.++|+|++|+|||||++.+++.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45799999999999999999985
No 444
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.61 E-value=0.0013 Score=51.97 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|++|+|||||++.+.+-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 445
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.61 E-value=0.0013 Score=52.39 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++|+|++|+|||||++.+.|
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5589999999999999999986
No 446
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.60 E-value=0.0011 Score=52.77 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999763
No 447
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.60 E-value=0.0011 Score=59.83 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.++.|+|++||||||+++.++..+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 578899999999999999998643
No 448
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.59 E-value=0.0011 Score=55.26 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
-.+|+||+||||||.++.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998754
No 449
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.58 E-value=0.0016 Score=57.37 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
..++|+||.|||||||...|+..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4789999999999999999998763
No 450
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.57 E-value=0.0013 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998753
No 451
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.56 E-value=0.0012 Score=53.18 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.+-
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999975
No 452
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0012 Score=52.79 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999873
No 453
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.55 E-value=0.0011 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 454
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.55 E-value=0.0015 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 56899999999999999998864
No 455
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.54 E-value=0.0015 Score=51.75 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 456
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.54 E-value=0.0011 Score=56.66 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..++|+|+.|||||||++.+.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999974
No 457
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.53 E-value=0.0012 Score=52.40 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++|+|++|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999999864
No 458
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.53 E-value=0.0055 Score=64.06 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=63.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
-++.|.||+|+|||||+..++.......+.+.+....-.. .+. .++.+|+....-..... ...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~-----------~~~-----~a~~lGvd~~~L~i~~~-~~~ 446 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-----------DPI-----YARKLGVDIDNLLCSQP-DTG 446 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-----------CHH-----HHHHTTCCGGGCEEECC-SSH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch-----------HHH-----HHHHcCCCHHHeEEcCC-CCH
Confidence 4688999999999999988877655455666665433211 010 13444543211000000 011
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcccH-H------------hHHHHHHHHHHHH----HhCCCcEEEEE
Q 026569 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIEL-F------------THVPVLRNFVDHL----KSRNFNVCAVY 137 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~LD~-~------------~~~~~~~~ll~~l----~~~~~~ii~v~ 137 (236)
..+ ..+++.+....+|+++++|..+.+-+ . .+.+.+.+.+++| ++.+.+++++.
T Consensus 447 e~~-l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~in 517 (1706)
T 3cmw_A 447 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 517 (1706)
T ss_dssp HHH-HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHH-HHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 112 33444443222899999999998332 0 1222233555555 34688888773
No 459
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.51 E-value=0.00091 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=9.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++|+|+.|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999998875
No 460
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.50 E-value=0.0016 Score=52.32 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+-++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 458999999999999999998753
No 461
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.48 E-value=0.015 Score=49.78 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
..+.+-||+|+||||+++.++..+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh
Confidence 356677889999999999999876
No 462
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.48 E-value=0.0015 Score=52.64 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++|+|++|+|||||++.+.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5689999999999999999986
No 463
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.48 E-value=0.0011 Score=63.35 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=26.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcC--CCceE
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTM 33 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~--~~G~i 33 (236)
..++|+|++|+|||||++.+.+...+ ..|+|
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 46899999999999999999987654 56776
No 464
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.47 E-value=0.0015 Score=52.05 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999973
No 465
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.45 E-value=0.0018 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+-++++|++|+|||||++.+.+-.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 568999999999999999988743
No 466
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.45 E-value=0.0017 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 467
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.45 E-value=0.0063 Score=48.32 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCeeEEEE-cCCCCcHHHHHHHHHhCCcCCCceEEEeecCCC
Q 026569 1 MGYAQLVI-GPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (236)
Q Consensus 1 ~~~~~~ii-GpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (236)
|+. ++|. +..|+||||+.-.++..+...+.+|.+.+.|+.
T Consensus 1 M~v-i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 1 MKV-ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ 41 (206)
T ss_dssp CEE-EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CeE-EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 544 4455 678899999999999988776668999888864
No 468
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.43 E-value=0.0016 Score=51.66 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 026569 5 QLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+.|.||+|+||||+++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998764
No 469
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.42 E-value=0.0019 Score=54.69 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
.++++|.+|+|||||++.+.|-..
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC
T ss_pred heEEeCCCCCCHHHHHHHHhcccc
Confidence 578999999999999999998644
No 470
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.41 E-value=0.0014 Score=53.89 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=24.8
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCcCCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~ 30 (236)
+..+.+-|+.||||||.++.+...+....
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35688999999999999999999887543
No 471
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.40 E-value=0.0019 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++++|++|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 5689999999999999999985
No 472
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.39 E-value=0.0087 Score=48.72 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=33.2
Q ss_pred CCeeEEEEc-CCCCcHHHHHHHHHhCCcCCCceEEEeecCCCC
Q 026569 1 MGYAQLVIG-PAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (236)
Q Consensus 1 ~~~~~~iiG-pnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~ 42 (236)
|..+++|.| ..|+||||+.-.++..+...+.+|.+.+.|+..
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM 43 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 555666665 568999999999999887666689999888853
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.39 E-value=0.0017 Score=53.63 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
..++|.|+.||||||+++.|+..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999998774
No 474
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.39 E-value=0.0019 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
..++|+||+|||||||...++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999875
No 475
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.36 E-value=0.00079 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.+-
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999988753
No 476
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.36 E-value=0.0016 Score=55.20 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
-++|+|.+|+|||||++.+.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 477
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.36 E-value=0.0021 Score=51.34 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 45899999999999999999864
No 478
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.36 E-value=0.0015 Score=54.62 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=24.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~ 30 (236)
..+++.|++||||||+++.+...+....
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 5688999999999999999999876543
No 479
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.35 E-value=0.0018 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.485 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.++.+.||+|+|||+++++++..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367788999999999999999865
No 480
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.35 E-value=0.002 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++++|+.|+|||||++.+.|-
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999974
No 481
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.33 E-value=0.00087 Score=56.01 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
.+.|.||+|+||||+++++++..
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 46789999999999999999854
No 482
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.32 E-value=0.0016 Score=60.43 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.6
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
+.++.++|.+||||||+.+.|+..+.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56889999999999999999987553
No 483
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.32 E-value=0.0036 Score=51.68 Aligned_cols=124 Identities=19% Similarity=0.144 Sum_probs=64.0
Q ss_pred CeeEEEEcCCCCcHHH-HHHHHHhCCcCCCceEEEeecCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026569 2 GYAQLVIGPAGSGKST-YCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 2 ~~~~~iiGpnGsGKST-Ll~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
+.+..+.||-|||||| |++.+..... .+.++.+..-.. +-|. ....+..+.|+.-..-....
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~-~g~kvli~kp~~-----------D~R~--~~~~I~Sr~G~~~~a~~v~~--- 90 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIY-AKQKVVVFKPAI-----------DDRY--HKEKVVSHNGNAIEAINISK--- 90 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC------------------------CBTTBCCEEEEESS---
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-cCCceEEEEecc-----------CCcc--hhhhHHHhcCCceeeEEeCC---
Confidence 4678999999999999 7788766533 234555442111 1111 01224444444322111100
Q ss_pred hhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhH
Q 026569 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
. ..+ ...+.. +.+++++||.--++.. +. +.+.++...|+.|++. =+|+.+-..+-.-+..++
T Consensus 91 ~-~di----~~~i~~--~~dvV~IDEaQFf~~~----~v-~~l~~la~~gi~Vi~~-GLd~DF~~~~F~~~~~Ll 152 (219)
T 3e2i_A 91 A-SEI----MTHDLT--NVDVIGIDEVQFFDDE----IV-SIVEKLSADGHRVIVA-GLDMDFRGEPFEPMPKLM 152 (219)
T ss_dssp G-GGG----GGSCCT--TCSEEEECCGGGSCTH----HH-HHHHHHHHTTCEEEEE-EESBCTTSCBCTTHHHHH
T ss_pred H-HHH----HHHHhc--CCCEEEEechhcCCHH----HH-HHHHHHHHCCCEEEEe-ecccccccCCCccHHHHH
Confidence 0 111 111234 7899999998557763 33 4455666678877544 467766665555443333
No 484
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.31 E-value=0.0013 Score=55.17 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCc
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
..++|.|+.||||||+++.|+..+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5688999999999999999998764
No 485
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.30 E-value=0.0013 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g 24 (236)
+-++++|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999998853
No 486
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0025 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999874
No 487
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.28 E-value=0.0023 Score=52.62 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHH
Q 026569 3 YAQLVIGPAGSGKSTYCSSLY 23 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~ 23 (236)
-.+++.||+||||||++..+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 357899999999999877664
No 488
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.27 E-value=0.15 Score=46.65 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=26.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC-CceEEEeec
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNL 38 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-~G~i~i~~~ 38 (236)
..+.|.|++|+|||||+..++-..... ++.|.+...
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 467899999999999988877654433 445665543
No 489
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.27 E-value=0.0026 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
|.+||+|.-||||||.++.+..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~~ 32 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAAR 32 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 78999999999999999999873
No 490
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.26 E-value=0.0026 Score=51.84 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|++|+|||||++.+.|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 491
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.25 E-value=0.0022 Score=51.27 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 55899999999999999999863
No 492
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.24 E-value=0.001 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=4.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
+-++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999988754
No 493
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.24 E-value=0.0028 Score=51.18 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.1
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
.+-++|+|++|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999873
No 494
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.24 E-value=0.0027 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.3
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHh
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g 24 (236)
..+++|.|++|+||||++..+..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999998876
No 495
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.22 E-value=0.0011 Score=55.08 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~ 29 (236)
..+++-|+.||||||+++.|...+...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 568899999999999999999987643
No 496
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.22 E-value=0.0028 Score=55.26 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=26.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~ 36 (236)
..+.|.||+|+||||+++.++..+......+.+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 3688999999999999999999876443444444
No 497
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.21 E-value=0.0026 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 026569 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
..+.|.||+|+||||+++.++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999999986
No 498
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.20 E-value=0.0029 Score=57.80 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.2
Q ss_pred CeeEEEEcCCCCcHHHHHHHHHhCC
Q 026569 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l 26 (236)
+..+.++|.+||||||+.+.++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998754
No 499
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.18 E-value=0.011 Score=57.00 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCcCCCceEEEe
Q 026569 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~ 36 (236)
.+.+.||+|+|||++.++++..+....+.+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 488999999999999999999874444444333
No 500
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.17 E-value=0.0023 Score=51.10 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=22.0
Q ss_pred eeEEEEcCCCCcHHHHH-HHHHhCCcCCCceEEE
Q 026569 3 YAQLVIGPAGSGKSTYC-SSLYRHCETVRRTMHI 35 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl-~~l~g~l~~~~G~i~i 35 (236)
.++.+.||.||||||++ +.+..+.. .+.++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~-~g~~v~~ 36 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL-GKKKVAV 36 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH-TTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEE
Confidence 57889999999999997 44444322 2345554
Done!