Query 026571
Match_columns 236
No_of_seqs 164 out of 727
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 09:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01571 A_thal_Cys_rich unch 100.0 5.6E-31 1.2E-35 206.3 7.5 104 60-191 1-104 (104)
2 PF04749 PLAC8: PLAC8 family; 99.9 1.9E-27 4.2E-32 183.6 6.4 106 62-189 1-106 (106)
3 PF05835 Synaphin: Synaphin pr 61.9 4.4 9.6E-05 33.6 1.4 16 152-167 63-78 (139)
4 PF06570 DUF1129: Protein of u 37.0 23 0.0005 30.5 1.9 19 148-166 188-206 (206)
5 PF06679 DUF1180: Protein of u 23.3 29 0.00063 29.5 0.2 17 151-167 117-135 (163)
6 KOG3657 Mitochondrial DNA poly 14.4 91 0.002 33.3 1.4 18 150-167 249-266 (1075)
7 PF12273 RCR: Chitin synthesis 13.4 1.3E+02 0.0028 24.0 1.7 7 158-164 26-32 (130)
8 PF14714 KH_dom-like: KH-domai 13.0 1.4E+02 0.003 22.1 1.7 20 149-168 56-75 (80)
9 COG3771 Predicted membrane pro 12.1 1.4E+02 0.003 23.2 1.5 22 136-157 50-71 (97)
10 KOG0057 Mitochondrial Fe/S clu 12.1 1.3E+02 0.0028 30.6 1.7 24 145-168 190-213 (591)
No 1
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.97 E-value=5.6e-31 Score=206.30 Aligned_cols=104 Identities=43% Similarity=0.967 Sum_probs=83.5
Q ss_pred CCCCcCCccccCCccccccccchhHHHHHHHHHHhcCCCCCCccccccchhhchhhHHHhhhhHHhccCCCcchhhhcch
Q 026571 60 EPWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAATAVFHGIDPRTSFLICEGL 139 (236)
Q Consensus 60 ~~WstGLfdC~~D~~~C~~~~~CPCv~~Gqn~erl~~~~~~~~~C~c~~~~v~Gg~~~a~~~a~~~g~~p~~~~li~~gl 139 (236)
++|++|||||++|+++|++++||||+++|+|++|++.+. ++|. ..++.+.+++++ .|
T Consensus 1 ~~W~~gL~dC~~d~~~C~~~~~CPc~~~g~~~~~~~~~~---~~C~------~~~~~~~~~~~~-------------~~- 57 (104)
T TIGR01571 1 SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFA---GECL------CGGLTAIAMSAL-------------CG- 57 (104)
T ss_pred CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhCCCC---Cchh------hHHHHHHHHHHH-------------Hh-
Confidence 589999999999999999999999999999999998532 3342 122222211110 01
Q ss_pred hhhhhhhccchhHHHHHHHHHcCCCCCCCcchhhcccchhHHHHHHHHHHHh
Q 026571 140 FFAWWMCGIYTGNLRQNLQKKYHLKNSPCEPCLVNCCLHWCALCQEHREMKN 191 (236)
Q Consensus 140 ~f~w~~~~i~~~~~R~~IR~kYgI~Gs~c~Dc~~~~cC~~CaL~Qe~RElk~ 191 (236)
+.++|.+.+|++||+||||+|+.++||++++||++|+||||+||||+
T Consensus 58 -----~~~~~~~~~R~~~R~ry~i~gs~~~D~~~~~~C~~C~lcQ~~RElk~ 104 (104)
T TIGR01571 58 -----FCGCYTCFIRIKLREKYGIQGAPCDDCLTHLFCCFCALCQEHRELKM 104 (104)
T ss_pred -----HHHHHHHHHHHHHHHHhCCCCCCcccchHHHHhhhHHHHHHHHHHhC
Confidence 23478889999999999999999999999999999999999999984
No 2
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.94 E-value=1.9e-27 Score=183.55 Aligned_cols=106 Identities=36% Similarity=0.793 Sum_probs=79.8
Q ss_pred CCcCCccccCCccccccccchhHHHHHHHHHHhcCCCCCCccccccchhhchhhHHHhhhhHHhccCCCcchhhhcchhh
Q 026571 62 WTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAATAVFHGIDPRTSFLICEGLFF 141 (236)
Q Consensus 62 WstGLfdC~~D~~~C~~~~~CPCv~~Gqn~erl~~~~~~~~~C~c~~~~v~Gg~~~a~~~a~~~g~~p~~~~li~~gl~f 141 (236)
|++|||||++|+++|++++||||+++++|++|++.+..+.+.. ...+..... ++. ..+ .+
T Consensus 1 W~~gl~~C~~d~~~c~~~~~cPc~~~~~~~~~l~~~~~~~~~~--~~~C~~~~~-------~~~----------~~~-~~ 60 (106)
T PF04749_consen 1 WSTGLCDCFSDPGSCCLACFCPCCSFGQNAERLGDGPRSRGPA--FGSCCLCFC-------CFG----------CAA-CL 60 (106)
T ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHHhccCCccCCCC--CccHHHHHH-------HHH----------HHH-HH
Confidence 9999999999999999999999999999999999865332211 000000000 000 000 00
Q ss_pred hhhhhccchhHHHHHHHHHcCCCCCCCcchhhcccchhHHHHHHHHHH
Q 026571 142 AWWMCGIYTGNLRQNLQKKYHLKNSPCEPCLVNCCLHWCALCQEHREM 189 (236)
Q Consensus 142 ~w~~~~i~~~~~R~~IR~kYgI~Gs~c~Dc~~~~cC~~CaL~Qe~REl 189 (236)
++.++|.+.+|++||+||||+|+.++||++++||++|||+||+|||
T Consensus 61 --~l~~~~~~~~R~~iR~ry~I~g~~~~D~~~~~~C~~Cal~Q~~rEl 106 (106)
T PF04749_consen 61 --GLGWCYGCSLRQQIRERYGIQGSCCEDCCCSCCCPPCALCQEAREL 106 (106)
T ss_pred --HHhHhhhhhHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHhhC
Confidence 1123577899999999999999999999999999999999999996
No 3
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=61.88 E-value=4.4 Score=33.64 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=10.3
Q ss_pred HHHHHHHHHcCCCCCC
Q 026571 152 NLRQNLQKKYHLKNSP 167 (236)
Q Consensus 152 ~~R~~IR~kYgI~Gs~ 167 (236)
..|+.||.||+|+-+-
T Consensus 63 ~mRq~IRdKY~l~k~e 78 (139)
T PF05835_consen 63 KMRQHIRDKYGLKKKE 78 (139)
T ss_dssp HHHHHHHHHHT-----
T ss_pred HHHHHHHhhccccccc
Confidence 6899999999999874
No 4
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.00 E-value=23 Score=30.52 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=15.8
Q ss_pred cchhHHHHHHHHHcCCCCC
Q 026571 148 IYTGNLRQNLQKKYHLKNS 166 (236)
Q Consensus 148 i~~~~~R~~IR~kYgI~Gs 166 (236)
+.....|.-+|+||||+|+
T Consensus 188 ~i~~~~~~~lkkk~~i~~~ 206 (206)
T PF06570_consen 188 VIAFALRFYLKKKYNITGS 206 (206)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 3455789999999999986
No 5
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=23.33 E-value=29 Score=29.52 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=10.5
Q ss_pred hHHHHHHH--HHcCCCCCC
Q 026571 151 GNLRQNLQ--KKYHLKNSP 167 (236)
Q Consensus 151 ~~~R~~IR--~kYgI~Gs~ 167 (236)
...|.+.| +||||-++.
T Consensus 117 ~R~r~~~rktRkYgvl~~~ 135 (163)
T PF06679_consen 117 FRLRRRNRKTRKYGVLTTR 135 (163)
T ss_pred HhhccccccceeecccCCC
Confidence 34554444 689987764
No 6
>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair]
Probab=14.36 E-value=91 Score=33.32 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHcCCCCCC
Q 026571 150 TGNLRQNLQKKYHLKNSP 167 (236)
Q Consensus 150 ~~~~R~~IR~kYgI~Gs~ 167 (236)
...-|++||+.|+|+||-
T Consensus 249 VsfDRaRirEeY~i~~Sk 266 (1075)
T KOG3657|consen 249 VSFDRARIREEYNINGSK 266 (1075)
T ss_pred ccchHHHHHHHHhccccc
Confidence 457899999999999994
No 7
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=13.38 E-value=1.3e+02 Score=23.99 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=3.2
Q ss_pred HHHcCCC
Q 026571 158 QKKYHLK 164 (236)
Q Consensus 158 R~kYgI~ 164 (236)
|+|-|++
T Consensus 26 R~r~G~~ 32 (130)
T PF12273_consen 26 RRRRGLQ 32 (130)
T ss_pred HhhcCCC
Confidence 3333665
No 8
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=12.98 E-value=1.4e+02 Score=22.12 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=13.5
Q ss_pred chhHHHHHHHHHcCCCCCCC
Q 026571 149 YTGNLRQNLQKKYHLKNSPC 168 (236)
Q Consensus 149 ~~~~~R~~IR~kYgI~Gs~c 168 (236)
|.=.+..+||+.||+.|.+.
T Consensus 56 Y~ryL~n~lRe~f~f~G~Pi 75 (80)
T PF14714_consen 56 YKRYLENQLREAFGFEGVPI 75 (80)
T ss_dssp HHHHHHHHHHHHH--TTS--
T ss_pred HHHHHHHHHHHHCCCCceeE
Confidence 45578889999999999873
No 9
>COG3771 Predicted membrane protein [Function unknown]
Probab=12.10 E-value=1.4e+02 Score=23.22 Aligned_cols=22 Identities=27% Similarity=0.842 Sum_probs=12.9
Q ss_pred hcchhhhhhhhccchhHHHHHH
Q 026571 136 CEGLFFAWWMCGIYTGNLRQNL 157 (236)
Q Consensus 136 ~~gl~f~w~~~~i~~~~~R~~I 157 (236)
..|+.+.|..++++.-..|-++
T Consensus 50 ~~G~~lgwli~g~fy~k~~l~~ 71 (97)
T COG3771 50 AAGFALGWLICGLFYLKVRLSL 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677876766654444443
No 10
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=12.06 E-value=1.3e+02 Score=30.61 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=19.5
Q ss_pred hhccchhHHHHHHHHHcCCCCCCC
Q 026571 145 MCGIYTGNLRQNLQKKYHLKNSPC 168 (236)
Q Consensus 145 ~~~i~~~~~R~~IR~kYgI~Gs~c 168 (236)
...++...+|.++|++||...+.+
T Consensus 190 a~Ti~~t~~Rn~fR~~~N~Adn~a 213 (591)
T KOG0057|consen 190 AFTIVVTRWRNRFRKAMNNADNSA 213 (591)
T ss_pred eeEEeehhHHHHHHHHHHhhhhHH
Confidence 344667899999999999988764
Done!