BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026572
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VCX3|RM45_DROME Probable 39S ribosomal protein L45, mitochondrial OS=Drosophila
melanogaster GN=mRpL45 PE=2 SV=1
Length = 361
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 41 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQK 98
IS G I+E Y P E + + G ++ + + + KS A+ K+R +S
Sbjct: 109 ISCTGGIFEAYVPPEG-DGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYDENFSSDD 167
Query: 99 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 158
F EA D+Y + +T MA DK +R+ V+E+ Y + + +K + ++ W+ ++ +
Sbjct: 168 FGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVKDK-----TIRWKFLQSLEP 222
Query: 159 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 215
R + AR+ V + F Q+T+ F ++Q YD G + G E++ +D+
Sbjct: 223 PRVVHARVTEVITKE--NQFAQVTVRFHSQQMLAIYDRFGRLMHGS---EIITKDVLEYV 277
Query: 216 VFEKSLFHPGAYWRLCGRI 234
VFEK + + WRL +I
Sbjct: 278 VFEKHISNEYGKWRLHDKI 296
>sp|Q4QQQ4|RM45_XENTR 39S ribosomal protein L45, mitochondrial OS=Xenopus tropicalis
GN=mrpl45 PE=2 SV=1
Length = 309
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 15/200 (7%)
Query: 39 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 96
++I+ I++PY P E +++G ++ + S AI K+++ S ++
Sbjct: 76 INIACTAGIFDPYIPPEGDARLSS-LSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTT 134
Query: 97 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 156
+ F +A +L+ + + D+ L VTE+ Y + R + + ++ W +E I
Sbjct: 135 KTFPEKAQELFIAAHQCLTKFDRHELHTLVTERCYPEMV-----RGNRYRTIQWSFVESI 189
Query: 157 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEVLVRDI 214
R ++ R V + +L + Q+T+ KQ YD G + G ++ ++VL +
Sbjct: 190 EAPRVVQVRCPEMVSKGNL---YAQVTVRMHNKQSLTIYDRFGRVMCGSEEPRDVL--EY 244
Query: 215 WVFEKSLFHPGAYWRLCGRI 234
VFE+ + +P WR+ G+I
Sbjct: 245 VVFERHMVNPYGTWRMHGKI 264
>sp|P59480|RM45_XENLA 39S ribosomal protein L45, mitochondrial OS=Xenopus laevis
GN=mrpl45 PE=2 SV=1
Length = 309
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 15/200 (7%)
Query: 39 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 96
++I+ I +PY P E +++G ++ + S AI K+++ S ++
Sbjct: 76 INIACTAGILDPYVPPEGDARLSS-LSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTT 134
Query: 97 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 156
+ F +A +++ + + N D+ L VTE+ Y + R + + ++ W +E I
Sbjct: 135 KTFPEKAQEIFITAHKYLTNFDRHKLHTLVTERCYPEMV-----RGNRYRTIRWSFVESI 189
Query: 157 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEVLVRDI 214
R ++ R V + +L + Q+T+ KQ YD G + G ++ ++VL +
Sbjct: 190 EAPRVVQVRCPEMVSKGNL---YAQVTVRMHNKQTLIVYDRFGRVMCGSEEPRDVL--EY 244
Query: 215 WVFEKSLFHPGAYWRLCGRI 234
VFE+ + +P WR+ G+I
Sbjct: 245 VVFERHMVNPYGTWRMHGKI 264
>sp|Q9D0Q7|RM45_MOUSE 39S ribosomal protein L45, mitochondrial OS=Mus musculus GN=Mrpl45
PE=2 SV=1
Length = 306
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
Query: 39 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 96
+ ++ I++PY P E +++G + + + S AI K+R+ + +
Sbjct: 76 IHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQRTERLRKNAASQLAIRKIREFDANFKT 134
Query: 97 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 156
+ F +A D++ E + + N D L VTE + + ++K + +V W +E +
Sbjct: 135 KDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMVWDLK-----YKTVRWGFVESL 189
Query: 157 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDI 214
+ + R G+ + + ++ Q+T+ +Q YD G + G D K+VL +
Sbjct: 190 EPAQVVHVRCSGL--VNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVL--EY 245
Query: 215 WVFEKSLFHPGAYWRLCGRI 234
VFE+ L +P WR+ +I
Sbjct: 246 VVFERHLMNPYGSWRMHAKI 265
>sp|Q3T142|RM45_BOVIN 39S ribosomal protein L45, mitochondrial OS=Bos taurus GN=MRPL45
PE=2 SV=1
Length = 306
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 9/173 (5%)
Query: 64 FTRDGWRRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTS 121
+++G + + + + S +I ++++S + + F +A D++ E + + N D
Sbjct: 100 LSKEGLAQRTERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDR 159
Query: 122 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 181
L VTE + + +IK + +V+W +E + + ++ R + + + Q+
Sbjct: 160 LHTLVTENCFPDMVWDIK-----YKTVSWSFVESLEPPQVVQVRCSSLVTK--SNTYGQV 212
Query: 182 TLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
T+ +Q YD G + G + V + VFEK L +P WR+ G+I
Sbjct: 213 TVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLANPYGSWRMHGKI 265
>sp|Q9BRJ2|RM45_HUMAN 39S ribosomal protein L45, mitochondrial OS=Homo sapiens GN=MRPL45
PE=1 SV=2
Length = 306
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 92 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 151
+ + + F +A D++ E + + N D L VTE + + +IK + +V W
Sbjct: 130 ANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK-----YKTVRWS 184
Query: 152 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEV 209
+E + ++ R + + V+ Q+T+ +Q YD G + G D K+V
Sbjct: 185 FVESLEPSHVVQVRCSSM--MNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDV 242
Query: 210 LVRDIWVFEKSLFHPGAYWRLCGRI 234
L + VFEK L +P WR+ +I
Sbjct: 243 L--EYVVFEKQLTNPYGSWRMHTKI 265
>sp|Q95Y71|RM45_CAEEL Probable 39S ribosomal protein L45, mitochondrial OS=Caenorhabditis
elegans GN=Y119D3B.16 PE=3 SV=3
Length = 357
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 90 RKSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 146
+K G+ K + F +A D+Y + + + DKT++ K +TE ++ + +++
Sbjct: 164 KKQGFEKFDIKTFCAKAEDIYVQAHRALEQRDKTAMYKYITEYAFAKMWPDVEN-----G 218
Query: 147 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 206
SV +ELI + R + R N + Q+T+ +QK YD G + G +
Sbjct: 219 SVRFELISVLEPSRVVAVRCFDNPPKSGNDI-AQITVRMHTRQKLAVYDRFGGLLLGSED 277
Query: 207 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
+E V + VFE + WRL G+I
Sbjct: 278 EEKDVVEYVVFENHIAVVDGEWRLHGKI 305
>sp|Q616T6|RM45_CAEBR Probable 39S ribosomal protein L45, mitochondrial OS=Caenorhabditis
briggsae GN=CBG15146 PE=3 SV=1
Length = 361
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 90 RKSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 146
+K G+ K + F +A D+Y+ + M DK + + +TE ++ + +++
Sbjct: 167 KKQGFEKFDVKTFCAKAEDIYERAHKAMEARDKKEMYRCITEYAFAKMWPDVEN-----G 221
Query: 147 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 206
SV +EL+ + R + R N + Q+T+ +QK YD G + G +
Sbjct: 222 SVRFELVSIVEPSRVVAVRCFDNPPKSGNDI-AQITVRMHTRQKLALYDRFGGLILGSED 280
Query: 207 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
+E V + VFE + WRL G+I
Sbjct: 281 EEKDVVEYVVFENHIAVVDGEWRLHGKI 308
>sp|P46863|KL61_DROME Bipolar kinesin KRP-130 OS=Drosophila melanogaster GN=Klp61F PE=1
SV=2
Length = 1066
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 27/132 (20%)
Query: 98 KFYTEAVDLYKEINTLMANGDKT-----------------SLRKAVTEKMY--SALKNEI 138
K YTE +D K LMA DK S + + EKM ALK+E+
Sbjct: 373 KEYTEEIDKLKR--DLMAARDKNGIYLAEETYGEITLKLESQNRELNEKMLLLKALKDEL 430
Query: 139 KQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG 198
+ +E ++S V+ L+E +++ L+ K + LT + L K K + K
Sbjct: 431 QNKEKIFSEVSMSLVEKTQELKKTEENLLN------TKGTLLLTKKVLTKTKRRYKEKKE 484
Query: 199 VTVAGDKTKEVL 210
+ + KT++VL
Sbjct: 485 LVASHMKTEQVL 496
>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-11 PE=4 SV=1
Length = 1333
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 108 KEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLI 167
K+I + N + K+ K Y L+ I E W S++ + I + + A +
Sbjct: 948 KQIQEYVQNCHTCQINKSRNHKPYGPLQ-PIPPSERPWESLSMDFITALPESSGYNALFV 1006
Query: 168 GVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVF 217
VDR + V T A+Q +D + + G+ KE++ + +F
Sbjct: 1007 VVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN-PKEIIADNDHIF 1055
>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-7 PE=4 SV=1
Length = 1333
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 108 KEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLI 167
K+I + N + K+ K Y L+ I E W S++ + I + + A +
Sbjct: 948 KQIQEYVQNCHTCQINKSRNHKPYGPLQ-PIPPSERPWESLSMDFITALPESSGYNALFV 1006
Query: 168 GVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVF 217
VDR + V T A+Q +D + + G+ KE++ + +F
Sbjct: 1007 VVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN-PKEIIADNDHIF 1055
>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-1 PE=4 SV=1
Length = 1333
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 108 KEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLI 167
K+I + N + K+ K Y L+ I E W S++ + I + + A +
Sbjct: 948 KQIQEYVQNCHTCQINKSRNHKPYGPLQ-PIPPSERPWESLSMDFITALPESSGYNALFV 1006
Query: 168 GVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVF 217
VDR + V T A+Q +D + + G+ KE++ + +F
Sbjct: 1007 VVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN-PKEIIADNDHIF 1055
>sp|Q57573|SUHB_METJA Inositol-1-monophosphatase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=suhB PE=1 SV=1
Length = 252
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 117 GDKTSLRKAVTE----KMYSALKNEIKQRE--SMWSSVNWEL-IEPI------IKMRTLR 163
GD+T + ++E K +L I E + +S W + I+PI I
Sbjct: 37 GDETEIFDKISEDIALKYLKSLNVNIVSEELGVIDNSSEWTVVIDPIDGSFNFINGIPFF 96
Query: 164 ARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTK 207
A GV +N N+ + LT EFL K +EAY KG + G K K
Sbjct: 97 AFCFGVFKN--NEPYYGLTYEFLTKSFYEAYKGKGAYLNGRKIK 138
>sp|Q8I3Z1|MLRR1_PLAF7 MATH and LRR domain-containing protein PFE0570w OS=Plasmodium
falciparum (isolate 3D7) GN=PFE0570w PE=2 SV=1
Length = 10061
Score = 30.8 bits (68), Expect = 7.7, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 127 TEKMYSA-------LKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRND-LNKVF 178
+E +YS+ LK E+++ E + E+ +++ LR ++ND LN +F
Sbjct: 8644 SETLYSSFTKEIEKLKKEVRKCEESYDKEMVEIQNTKKEIKYLREN----NKNDELNNIF 8699
Query: 179 VQLTLEFLAKQKFEAYDSKGVTV 201
+L LE ++K AY+ G+ V
Sbjct: 8700 SELNLENISKYLLSAYEKYGLNV 8722
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,310,391
Number of Sequences: 539616
Number of extensions: 3080859
Number of successful extensions: 8325
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 8304
Number of HSP's gapped (non-prelim): 34
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)