Query 026573
Match_columns 236
No_of_seqs 149 out of 982
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:47:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_R Ribosomal protein L19; 100.0 9.1E-74 3.1E-78 503.3 -6.0 222 1-236 1-233 (233)
2 2ftc_K 39S ribosomal protein L 100.0 3.5E-44 1.2E-48 281.5 11.5 94 143-236 1-94 (98)
3 3r8s_P 50S ribosomal protein L 100.0 1.8E-42 6.1E-47 278.1 12.7 100 132-231 5-105 (114)
4 2zjr_M 50S ribosomal protein L 100.0 3.5E-43 1.2E-47 297.2 8.3 112 123-235 5-117 (166)
5 3v2d_T 50S ribosomal protein L 100.0 6.2E-42 2.1E-46 284.7 12.8 100 132-231 8-108 (146)
6 2vc8_A Enhancer of mRNA-decapp 80.9 7.6 0.00026 29.7 7.6 59 147-215 7-70 (84)
7 2rm4_A CG6311-PB, DM EDC3; enh 61.9 45 0.0015 26.3 8.2 59 147-216 10-74 (103)
8 4a53_A EDC3; RNA binding prote 56.9 9.9 0.00034 30.9 3.8 52 148-214 11-64 (125)
9 1nz9_A Transcription antitermi 51.7 32 0.0011 23.0 5.2 28 145-178 4-31 (58)
10 4he6_A Peptidase family U32; u 49.1 13 0.00045 26.9 3.1 38 163-200 3-41 (89)
11 4fm4_B NitrIle hydratase beta 48.2 11 0.00038 32.4 2.9 36 143-178 116-155 (206)
12 2eif_A IF-5A, protein (eukaryo 48.1 20 0.00067 28.5 4.2 50 142-202 12-67 (136)
13 3p8d_A Medulloblastoma antigen 47.3 64 0.0022 23.2 6.4 47 143-201 4-50 (67)
14 3d6x_A (3R)-hydroxymyristoyl-[ 47.2 18 0.00062 27.3 3.7 28 146-173 101-128 (146)
15 4h4g_A (3R)-hydroxymyristoyl-[ 43.3 19 0.00066 28.8 3.5 28 145-172 110-137 (160)
16 2gll_A FABZ, (3R)-hydroxymyris 42.8 22 0.00074 28.5 3.7 29 145-173 124-152 (171)
17 3m4w_A Sigma-E factor regulato 42.6 53 0.0018 29.0 6.5 49 164-216 16-65 (295)
18 2e6z_A Transcription elongatio 42.5 16 0.00055 25.1 2.5 29 143-177 5-33 (59)
19 1jb7_A Telomere-binding protei 41.3 13 0.00044 35.5 2.5 40 141-186 108-148 (495)
20 4b3f_X DNA-binding protein smu 41.1 50 0.0017 31.2 6.5 34 142-178 75-110 (646)
21 3p8b_B Transcription antitermi 40.7 48 0.0016 26.0 5.4 49 143-199 89-139 (152)
22 1u1z_A (3R)-hydroxymyristoyl-[ 38.2 53 0.0018 25.9 5.3 28 146-173 121-148 (168)
23 2zzd_A Thiocyanate hydrolase s 38.2 21 0.00071 28.9 2.9 36 142-177 33-72 (126)
24 2kbn_A Conserved protein; nucl 38.0 25 0.00087 26.4 3.2 26 142-167 57-83 (109)
25 1ugp_B NitrIle hydratase beta 33.2 26 0.00089 30.5 2.9 35 143-177 136-174 (226)
26 3cnr_A Type IV fimbriae assemb 32.6 87 0.003 24.3 5.6 47 144-196 40-86 (117)
27 4i83_A 3-hydroxyacyl-[acyl-car 32.5 37 0.0013 26.4 3.5 28 146-173 107-134 (152)
28 3qyh_B CO-type nitrIle hydrata 32.0 28 0.00097 30.2 2.9 36 142-177 127-166 (219)
29 3hht_B NitrIle hydratase beta 30.0 31 0.0011 30.1 2.9 35 143-177 139-177 (229)
30 1z6b_A Pffabz, fatty acid synt 28.6 49 0.0017 25.3 3.5 28 145-172 106-135 (154)
31 1so2_A CGMP-inhibited 3',5'-cy 28.6 16 0.00054 34.3 0.8 28 103-130 384-413 (420)
32 3e0e_A Replication protein A; 28.0 57 0.0019 23.9 3.6 25 145-169 63-87 (97)
33 1qzg_A Protection of telomeres 26.6 53 0.0018 27.9 3.6 38 141-186 95-133 (187)
34 3j21_J 50S ribosomal protein L 26.1 1.1E+02 0.0038 25.0 5.4 37 141-177 51-87 (141)
35 2f41_A Transcription factor FA 25.9 82 0.0028 23.0 4.2 27 145-171 72-100 (121)
36 3db3_A E3 ubiquitin-protein li 25.8 1.6E+02 0.0054 24.7 6.3 36 142-177 89-124 (161)
37 1iz6_A Initiation factor 5A; S 25.1 46 0.0016 26.5 2.9 49 143-202 9-63 (138)
38 3qii_A PHD finger protein 20; 24.7 2.2E+02 0.0076 21.4 6.4 47 143-201 19-65 (85)
39 3fdr_A Tudor and KH domain-con 24.6 1.9E+02 0.0065 20.5 6.9 61 121-192 6-66 (94)
40 1vq8_K 50S ribosomal protein L 24.5 95 0.0032 25.1 4.6 37 141-177 42-78 (132)
41 1bkb_A Translation initiation 24.2 1.2E+02 0.0041 23.8 5.1 57 143-210 11-77 (136)
42 2bm3_A Type 2 cohesin, scaffol 24.1 1.2E+02 0.0041 25.6 5.3 32 142-177 14-45 (166)
43 3ntk_A Maternal protein tudor; 23.9 2E+02 0.0068 22.7 6.5 62 121-194 27-88 (169)
44 2k52_A Uncharacterized protein 21.3 69 0.0024 22.3 2.9 21 145-165 45-66 (80)
45 1zq1_A Glutamyl-tRNA(Gln) amid 20.9 1.7E+02 0.0057 27.6 6.2 65 145-219 11-77 (438)
No 1
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=9.1e-74 Score=503.26 Aligned_cols=222 Identities=63% Similarity=0.935 Sum_probs=112.1
Q ss_pred CCccccccceecccCC-CCCCCC-CCceeeeeeecC----CCCcccceeeeecccccccccceecc----cccceEEeec
Q 026573 1 MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSR----GPFVSHGVSVSAKPIGWNLGFFVNAQ----VKDSFVVRAE 70 (236)
Q Consensus 1 m~~~~l~q~~~~~p~~-~~~~~~-~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 70 (236)
|||++|||||+++|++ |.|||| |++||||+++.+ +.+.++++.|+|+ +|++|||+|+++ +|++||+|||
T Consensus 1 m~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~f~~r~~ 79 (233)
T 3bbo_R 1 MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRA-SSNLFSSNFSSIFSFPARNSFVVRSE 79 (233)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccchhhhccccccccCCCCChhhcccccccccccccccccccceEeecc-ccccccccccchhccccccceeEeec
Confidence 9999999999999997 568886 899999965533 3334456778877 899999999874 9999999999
Q ss_pred chhhhhcchhHHHHHHHhhhhcCCeeeeeecccc-chhhhhhcCCCCCCccchhhHHHHHHHHHHHhhhcCCCCCCCCCC
Q 026573 71 ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESE-DKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTG 149 (236)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pp~k~r~KL~dlM~iLe~~~ie~~~~kk~iP~f~~G 149 (236)
+++ +++++++++ +++.|+++| ..++|++.+||++++.||+++|++|+++.|++.++++++|+|++|
T Consensus 80 ~~~--~~~~~~~~~-----------~~~~e~~~~~~~~~~~~~~~p~~~~~k~~~iM~~L~re~ie~~q~kkdiPeFr~G 146 (233)
T 3bbo_R 80 AED--SSDAPAESV-----------AVVAEEELPVESEAEAEERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTG 146 (233)
T ss_dssp ------------------------------------------------------CCSSSCSTTHHHHTTCCSCCSSSCCC
T ss_pred ccc--CCCCcccch-----------hhcccccchhhhhhccccCCCCcchhHHHHHHHHHHHHHHHHHhhccCCCccCCC
Confidence 953 223322211 122233222 223344449999999999999999999999999999999999999
Q ss_pred CEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEEEeeecccCCcceeeeccCC
Q 026573 150 DVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL 229 (236)
Q Consensus 150 DiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~IeVlrr~KVRRAKLYYLRdk~ 229 (236)
|||+|++++.|+|+|+|.|+||||+++|+|+++||||||+++|+|||++||||||+|++|+|+++|||||||||||||++
T Consensus 147 DtV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpLhSP~I~kIEVvRrgKVRRAKLYYLRd~l 226 (233)
T 3bbo_R 147 DIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKL 226 (233)
T ss_dssp SCCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCCBSSSSSCCCCCCCSCCCCSCSSCCCCSS
T ss_pred CEEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEecCCCccceEEEEeccccchhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 026573 230 PRLSTFK 236 (236)
Q Consensus 230 ~r~STf~ 236 (236)
++|||||
T Consensus 227 p~~STf~ 233 (233)
T 3bbo_R 227 PRLSTFK 233 (233)
T ss_dssp TTCSSCC
T ss_pred cccccCC
Confidence 9999997
No 2
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=3.5e-44 Score=281.52 Aligned_cols=94 Identities=38% Similarity=0.693 Sum_probs=92.8
Q ss_pred CCCCCCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEEEeeecccCCcce
Q 026573 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARL 222 (236)
Q Consensus 143 iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~IeVlrr~KVRRAKL 222 (236)
+|+|++||||+|++++.++|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|||++++|||||||
T Consensus 1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaKL 80 (98)
T 2ftc_K 1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDSL 80 (98)
T ss_pred CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCcccceeE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCCC
Q 026573 223 YYLRDKLPRLSTFK 236 (236)
Q Consensus 223 YYLRdk~~r~STf~ 236 (236)
|||||+++++|||+
T Consensus 81 yYLR~~~~~~st~~ 94 (98)
T 2ftc_K 81 LYLRDALPEYSTFD 94 (98)
T ss_pred EEeccCCcccceec
Confidence 99999999999996
No 3
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=100.00 E-value=1.8e-42 Score=278.13 Aligned_cols=100 Identities=37% Similarity=0.708 Sum_probs=96.2
Q ss_pred HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEE
Q 026573 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIK 210 (236)
Q Consensus 132 ~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~Ie 210 (236)
+.+|+.|+++++|+|++||||+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||+|++|+
T Consensus 5 ~~~e~~~~~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~Ie 84 (114)
T 3r8s_P 5 KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIS 84 (114)
T ss_dssp HHHHGGGCCSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEE
T ss_pred HHHHHHHhccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCCccceEE
Confidence 57788888999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred EeeecccCCcceeeeccCCCC
Q 026573 211 VVSHRKVRRARLYYLRDKLPR 231 (236)
Q Consensus 211 Vlrr~KVRRAKLYYLRdk~~r 231 (236)
|++++|||||||||||++.++
T Consensus 85 V~r~gkvRRAKLyYLR~~~GK 105 (114)
T 3r8s_P 85 VKRRGAVRKAKLYYLRERTGK 105 (114)
T ss_dssp EEECEECCSSCCGGGTTCCHH
T ss_pred EEEccccchhheeeecCCcch
Confidence 999999999999999998754
No 4
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=100.00 E-value=3.5e-43 Score=297.18 Aligned_cols=112 Identities=36% Similarity=0.602 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeec
Q 026573 123 GDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201 (236)
Q Consensus 123 ~dlM~iLe~~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpL 201 (236)
+++|+.|+.+++.+. .++++|+|++||||+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++|||
T Consensus 5 M~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fpl 83 (166)
T 2zjr_M 5 IKINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF 83 (166)
T ss_dssp CCCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEET
T ss_pred HHHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEec
Confidence 455655555544322 2489999999999999999999 89999999999999999999999999999999999999999
Q ss_pred cCCccceEEEeeecccCCcceeeeccCCCCCCCC
Q 026573 202 YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF 235 (236)
Q Consensus 202 ySP~I~~IeVlrr~KVRRAKLYYLRdk~~r~STf 235 (236)
|||+|++|+|+++||||||||||||++.++...+
T Consensus 84 hSP~I~kIEVvrrGKVRRAKLYYLRd~~GKaARI 117 (166)
T 2zjr_M 84 ASPLVNQVTIVERGKVRRAKLYYLRELRGKAARI 117 (166)
T ss_dssp TCTTEEEEEEEECCCCSSSCCGGGCC--------
T ss_pred CCCccceEEEEeccccchhheeeccCCCCchhhe
Confidence 9999999999999999999999999998876544
No 5
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=100.00 E-value=6.2e-42 Score=284.71 Aligned_cols=100 Identities=38% Similarity=0.722 Sum_probs=96.5
Q ss_pred HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEE
Q 026573 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIK 210 (236)
Q Consensus 132 ~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~Ie 210 (236)
+.+|+.++++++|+|++||||+|++.+.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||+|++|+
T Consensus 8 ~~ie~~~~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl~SP~I~~Ie 87 (146)
T 3v2d_T 8 KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSPLIQKID 87 (146)
T ss_dssp HHHHHTTCCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEE
T ss_pred HHHHHHHhhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCCccceEE
Confidence 67888899999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred EeeecccCCcceeeeccCCCC
Q 026573 211 VVSHRKVRRARLYYLRDKLPR 231 (236)
Q Consensus 211 Vlrr~KVRRAKLYYLRdk~~r 231 (236)
|+++|||||||||||||+.++
T Consensus 88 VvrrgkVRRAKLYYLR~~~GK 108 (146)
T 3v2d_T 88 IVQRGRARRAKLYFIRNLSDR 108 (146)
T ss_dssp EEECEECSSSCCGGGGGCCHH
T ss_pred EEecCccchhheeeccCCcch
Confidence 999999999999999998653
No 6
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=80.86 E-value=7.6 Score=29.66 Aligned_cols=59 Identities=29% Similarity=0.489 Sum_probs=41.5
Q ss_pred CCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCCeeE-----EEEeeccCCccceEEEeeec
Q 026573 147 RTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGV-----EIVFPLYSPNIKEIKVVSHR 215 (236)
Q Consensus 147 ~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGV-----Er~FpLySP~I~~IeVlrr~ 215 (236)
..|++|.++- +.-+-.|+|++..+.. .+.|+||+|++ .-|+ |.+| -.--|++++|++..
T Consensus 7 ~iGs~VSi~c-----~d~lGvYQG~i~~vd~--~~~tItL~~~f-~NG~~~~s~eVtl--s~~DI~~L~ii~~~ 70 (84)
T 2vc8_A 7 WLGSIVSINC-----GDSLGVYQGRVSAVDQ--VSQTISLTRPF-HNGVKCLVPEVTF--RAGDITELKILEIP 70 (84)
T ss_dssp TTTCEEEEEC-----CTTTCEEEEEEEEEET--TTTEEEEEEEE-ETTEECSSSEEEE--EGGGCSEEEEEECC
T ss_pred ccCCEEEEEE-----CCCceEEEEEEEEecc--CCCeEEEehhh-hCCCCCCCcEEEE--EecChhheEEEecC
Confidence 4688888874 4446689999999875 45789999996 4454 3222 22358899998754
No 7
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=61.90 E-value=45 Score=26.25 Aligned_cols=59 Identities=24% Similarity=0.451 Sum_probs=42.7
Q ss_pred CCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeee-CCe-----eEEEEeeccCCccceEEEeeecc
Q 026573 147 RTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRII-AGI-----GVEIVFPLYSPNIKEIKVVSHRK 216 (236)
Q Consensus 147 ~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii-~Gv-----GVEr~FpLySP~I~~IeVlrr~K 216 (236)
..|..|.|+-. +-+-.|+|.|+.+.. .+++|++.+ +|+ -.|.+|.-- -|++++++...+
T Consensus 10 wiG~~VSI~C~-----d~LGVyQG~I~~V~~----~~ItL~kaFrNGiplk~~~~EVtLsa~--DI~~L~IIe~~~ 74 (103)
T 2rm4_A 10 WIGCAVSIACD-----EVLGVFQGLIKQISA----EEITIVRAFRNGVPLRKQNAEVVLKCT--DIRSIDLIEPAK 74 (103)
T ss_dssp GTTCEEEEEEC-----TTTCEEEEEEEEEET----TEEEEEEEEETTEECSCSSSCEEEETT--TEEEEEEEECCC
T ss_pred eeceEEEEeeC-----CcceEeeEEEEEccc----ceeEEhhhhhcCcCcCCCCceEEEEec--chhheeeecccc
Confidence 36888888863 346789999999984 669999976 444 347776644 488999887543
No 8
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=56.93 E-value=9.9 Score=30.91 Aligned_cols=52 Identities=15% Similarity=0.320 Sum_probs=40.7
Q ss_pred CCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEE--EeeeCCeeEEEEeeccCCccceEEEeee
Q 026573 148 TGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRI--RRIIAGIGVEIVFPLYSPNIKEIKVVSH 214 (236)
Q Consensus 148 ~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtL--Rnii~GvGVEr~FpLySP~I~~IeVlrr 214 (236)
.|..|.|++.. ++ .++|+|...-+.+ +|| |++..... .+-++.|++++|+..
T Consensus 11 lGy~V~v~LkD--gs----~~qG~I~~vd~k~----LtL~~~~a~~s~~-----~I~asdI~DLkVl~~ 64 (125)
T 4a53_A 11 YGSNVEVLLNN--DS----KARGVITNFDSSN----SILQLRLANDSTK-----SIVTKDIKDLRILPK 64 (125)
T ss_dssp TTCEEEEEETT--SC----EEEEEEEEEETTT----TEEEEEETTTEEE-----EEEGGGEEEEEECCS
T ss_pred cCceEEEEECC--CC----EeeEEEEeecCCe----eEEeccccccccc-----eeecccccceeeeec
Confidence 48899999873 23 6999999987644 566 99865555 888999999999975
No 9
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=51.70 E-value=32 Score=22.96 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=21.6
Q ss_pred CCCCCCEEEEEEEeecCccccceEEEEEEEEecC
Q 026573 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178 (236)
Q Consensus 145 ~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~ 178 (236)
.|.+||.|+|. ..-..-|+|.|..+...
T Consensus 4 ~~~~Gd~V~V~------~Gpf~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 4 AFREGDQVRVV------SGPFADFTGTVTEINPE 31 (58)
T ss_dssp SCCTTCEEEEC------SGGGTTCEEEEEEEETT
T ss_pred ccCCCCEEEEe------ecCCCCcEEEEEEEcCC
Confidence 58999999885 33456799999998753
No 10
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=49.15 E-value=13 Score=26.85 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=28.6
Q ss_pred cccceEEEEEEEEecCCccceEEEEeee-CCeeEEEEee
Q 026573 163 RRLSIYKGIVMSRQNAGIHTTIRIRRII-AGIGVEIVFP 200 (236)
Q Consensus 163 ~RiQ~F~GVVIa~r~~Gl~sTFtLRnii-~GvGVEr~Fp 200 (236)
.|.+.|.|.|.......-..++.+||-+ -|-++|..-|
T Consensus 3 ~~~~~fvG~V~~~~~~~g~~~ie~rN~f~~GD~iEi~~P 41 (89)
T 4he6_A 3 KTTREFAGLVLGYDPETGIATVQQRNHFRPGDEVEFFGP 41 (89)
T ss_dssp CSGGGCSEEEEEEETTTTEEEEEESSCBCTTCEEEEEST
T ss_pred ccccEEEEEEEEEeCCCCEEEEEEcCCcCCCCEEEEEcC
Confidence 3678899999998655335779999975 5889996644
No 11
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=48.18 E-value=11 Score=32.36 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=27.8
Q ss_pred CCCCCCCCEEEEEEEeecCccccceE----EEEEEEEecC
Q 026573 143 IPDIRTGDVVEIKLEVPENRRRLSIY----KGIVMSRQNA 178 (236)
Q Consensus 143 iP~f~~GDiV~V~~~i~E~K~RiQ~F----~GVVIa~r~~ 178 (236)
-|.|.+||.|+|.-..+.+-.|+..| .|+|++.++.
T Consensus 116 ~~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g~ 155 (206)
T 4fm4_B 116 EGGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISPA 155 (206)
T ss_dssp TTCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECCC
T ss_pred CCCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEecC
Confidence 36799999999986555566777665 7999988763
No 12
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=48.09 E-value=20 Score=28.55 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=32.6
Q ss_pred CCCCCCCCCEEEEEEEeecCccccceEEEEEEEEe----cC-C-ccceEEEEeeeCCeeEEEEeecc
Q 026573 142 PIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQ----NA-G-IHTTIRIRRIIAGIGVEIVFPLY 202 (236)
Q Consensus 142 ~iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r----~~-G-l~sTFtLRnii~GvGVEr~FpLy 202 (236)
..++|+.|++|.+. + +.|. |+... |+ | --..+.+||+..|.-+|.+|+-.
T Consensus 12 ~~~~lr~G~~I~~~-----g----~p~~--V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~ 67 (136)
T 2eif_A 12 NVGSLKVGQYVMID-----G----VPCE--IVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 67 (136)
T ss_dssp EGGGCCTTSEEEET-----T----EEEE--EEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETT
T ss_pred EHHHCcCCCEEEEC-----C----EEEE--EEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCC
Confidence 35789999999762 0 1232 33322 22 2 12456799999999999999854
No 13
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=47.30 E-value=64 Score=23.24 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=34.5
Q ss_pred CCCCCCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeec
Q 026573 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201 (236)
Q Consensus 143 iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpL 201 (236)
.|.|++||.|.-.+ . .-+.|.|.|.++.+.+ +++|+ +.+ |...+...
T Consensus 4 ~~~~~vGd~vmArW--~----D~~yYpA~I~si~~~~---~Y~V~--F~d-G~~etvk~ 50 (67)
T 3p8d_A 4 SSEFQINEQVLACW--S----DCRFYPAKVTAVNKDG---TYTVK--FYD-GVVQTVKH 50 (67)
T ss_dssp -CCCCTTCEEEEEC--T----TSCEEEEEEEEECTTS---EEEEE--ETT-SCEEEEEG
T ss_pred CcccccCCEEEEEc--C----CCCEeeEEEEEECCCC---eEEEE--EeC-CceEEEeH
Confidence 57899999999998 1 1357999999999874 47773 455 76665543
No 14
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=47.17 E-value=18 Score=27.32 Aligned_cols=28 Identities=32% Similarity=0.643 Sum_probs=20.8
Q ss_pred CCCCCEEEEEEEeecCccccceEEEEEE
Q 026573 146 IRTGDVVEIKLEVPENRRRLSIYKGIVM 173 (236)
Q Consensus 146 f~~GDiV~V~~~i~E~K~RiQ~F~GVVI 173 (236)
+.|||++.+++.+.+.+.++-.|+|.+.
T Consensus 101 V~pGd~l~~~~~v~~~~~~~~~~~~~~~ 128 (146)
T 3d6x_A 101 VRPGDRLDYEMSVVKNRGNMWIFKGQAF 128 (146)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 6889999999988765455556666554
No 15
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=43.27 E-value=19 Score=28.80 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=21.3
Q ss_pred CCCCCCEEEEEEEeecCccccceEEEEE
Q 026573 145 DIRTGDVVEIKLEVPENRRRLSIYKGIV 172 (236)
Q Consensus 145 ~f~~GDiV~V~~~i~E~K~RiQ~F~GVV 172 (236)
.+.|||+|.+++.+...+..+-.|.|.+
T Consensus 110 ~V~PGd~L~i~v~~~~~~~~~~~~~~~~ 137 (160)
T 4h4g_A 110 VVEPGDQLILNVTFERYIRGIWKFKAVA 137 (160)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCEEEEEEEE
Confidence 3688999999998876566666777754
No 16
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=42.79 E-value=22 Score=28.48 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=21.8
Q ss_pred CCCCCCEEEEEEEeecCccccceEEEEEE
Q 026573 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVM 173 (236)
Q Consensus 145 ~f~~GDiV~V~~~i~E~K~RiQ~F~GVVI 173 (236)
.+.|||+|.+++.+.+.+.++-.|+|.+.
T Consensus 124 pV~PGD~L~i~v~v~~~~~~~~~~~~~~~ 152 (171)
T 2gll_A 124 PVTPGDRLEYHLEVLKHKGMIWQVGGTAQ 152 (171)
T ss_dssp CCCTTCEEEEEEEEEEESSSEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEEeCCEEEEEEEEE
Confidence 36799999999998775556666777654
No 17
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=42.59 E-value=53 Score=29.02 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=38.0
Q ss_pred ccceEEEEEEEEecCCccceEEEE-eeeCCeeEEEEeeccCCccceEEEeeecc
Q 026573 164 RLSIYKGIVMSRQNAGIHTTIRIR-RIIAGIGVEIVFPLYSPNIKEIKVVSHRK 216 (236)
Q Consensus 164 RiQ~F~GVVIa~r~~Gl~sTFtLR-nii~GvGVEr~FpLySP~I~~IeVlrr~K 216 (236)
+.+.|+|..|-.++.++.+ +.+| .+.+|.-.|+.-.|..|. -||+|++.
T Consensus 16 ~~lnY~g~fV~~~~~~i~s-~ri~H~~~~~~~~e~L~~LdG~~---reviR~~~ 65 (295)
T 3m4w_A 16 QSLNYELSFISINKQGVES-LRYRHARLDNRPLAQLLQMDGPR---REVVQRGN 65 (295)
T ss_dssp HHSEEEEEEEEEETTEEEE-EEEEEEECSSSEEEEEEECSSSC---CEEEEETT
T ss_pred hhCCeEEEEEEEeCCeEEE-EEEEEEeeCCEEEEEEEEcCCCc---EEEEEECC
Confidence 4578999999999888755 5555 456667799999999987 47887763
No 18
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.47 E-value=16 Score=25.11 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=22.1
Q ss_pred CCCCCCCCEEEEEEEeecCccccceEEEEEEEEec
Q 026573 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN 177 (236)
Q Consensus 143 iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~ 177 (236)
-..|.+||+|+|. ..=..-|+|+|..+.+
T Consensus 5 ~~~f~~GD~V~V~------~Gpf~g~~G~V~evd~ 33 (59)
T 2e6z_A 5 SSGFQPGDNVEVC------EGELINLQGKILSVDG 33 (59)
T ss_dssp CSSCCTTSEEEEC------SSTTTTCEEEECCCBT
T ss_pred cccCCCCCEEEEe------ecCCCCCEEEEEEEeC
Confidence 3469999999985 2224579999999886
No 19
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=41.31 E-value=13 Score=35.54 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=30.8
Q ss_pred CCCCCC-CCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEE
Q 026573 141 RPIPDI-RTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRI 186 (236)
Q Consensus 141 k~iP~f-~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtL 186 (236)
..+|.+ .+||+|.++=. ++|.|.|-+.+.-+.+.+++|-|
T Consensus 108 e~LP~V~~~GDII~Lhrv------kIq~~ng~~~~v~~~~~~Sswav 148 (495)
T 1jb7_A 108 EDLPIIHRAGDIIRVHRA------TLRLYNGQRQFNANVFYSSSWAL 148 (495)
T ss_dssp GGSCCCCEETCEEEEEEE------EEEEETTEEEEEEETTTTCEEEE
T ss_pred HHCCCCCCCCCEEEEEEE------EEEEECCcEEEEecCCCceEEEE
Confidence 469999 79999999732 35678888888878887788765
No 20
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=41.07 E-value=50 Score=31.24 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=24.8
Q ss_pred CCC--CCCCCCEEEEEEEeecCccccceEEEEEEEEecC
Q 026573 142 PIP--DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178 (236)
Q Consensus 142 ~iP--~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~ 178 (236)
.+| .|++||+|.|.-. +....+.+.|+|..+...
T Consensus 75 ~l~~~~~~~Gd~v~~~~~---~~~~~~~~~g~v~~~~~~ 110 (646)
T 4b3f_X 75 ALPSNSFTSGDIVGLYDA---ANEGSQLATGILTRVTQK 110 (646)
T ss_dssp CCCCCCCCTTCEEEEEET---TTTSCCCEEEEEEEEETT
T ss_pred CCccCCCCCCCEEEEEec---CCCCCceEEEEEEEEeCC
Confidence 466 6999999988632 233446799999999764
No 21
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=40.74 E-value=48 Score=26.00 Aligned_cols=49 Identities=22% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCCCCCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCC--eeEEEEe
Q 026573 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAG--IGVEIVF 199 (236)
Q Consensus 143 iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~G--vGVEr~F 199 (236)
...|.+||.|+|. ..-..-|.|+|..+.+..-. .+|.=.+.| +.||.-|
T Consensus 89 ~~~~~~Gd~VrI~------~Gpf~g~~g~V~~vd~~k~~--v~V~v~~~gr~tpvel~~ 139 (152)
T 3p8b_B 89 VSGLEPGDLVEVI------AGPFKGQKAKVVKIDESKDE--VVVQFIDAIVPIPVTIKG 139 (152)
T ss_dssp TTTCCTTCEEEEC------SSTTTTCEEEEEEEETTTTE--EEEEESSCSSCCEEEEEG
T ss_pred cccCCCCCEEEEe------eecCCCCEEEEEEEeCCCCE--EEEEEEecceeEEEEECH
Confidence 4579999999985 23366799999999875533 444334444 3455443
No 22
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=38.24 E-value=53 Score=25.91 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=19.4
Q ss_pred CCCCCEEEEEEEeecCccccceEEEEEE
Q 026573 146 IRTGDVVEIKLEVPENRRRLSIYKGIVM 173 (236)
Q Consensus 146 f~~GDiV~V~~~i~E~K~RiQ~F~GVVI 173 (236)
+.|||+|++++.+.+.+..+-.|++.+.
T Consensus 121 V~pGD~L~~~v~v~~~~~g~~~~~~~~~ 148 (168)
T 1u1z_A 121 VLPGDQLQLHAKFISVKRSIWKFDCHAT 148 (168)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEeCCEEEEEEEEE
Confidence 6699999999988764444455555443
No 23
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=38.19 E-value=21 Score=28.89 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCCCCCCCCEEEEEEEeecCccccceE----EEEEEEEec
Q 026573 142 PIPDIRTGDVVEIKLEVPENRRRLSIY----KGIVMSRQN 177 (236)
Q Consensus 142 ~iP~f~~GDiV~V~~~i~E~K~RiQ~F----~GVVIa~r~ 177 (236)
.-|.|.+||.|+|.-..+..-.|+..| .|+|....+
T Consensus 33 ~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 33 GKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVY 72 (126)
T ss_dssp CSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEE
T ss_pred CCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEec
Confidence 357899999999985555466676665 688877765
No 24
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=37.97 E-value=25 Score=26.41 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=18.4
Q ss_pred CCCCCCCCCEEEEE-EEeecCccccce
Q 026573 142 PIPDIRTGDVVEIK-LEVPENRRRLSI 167 (236)
Q Consensus 142 ~iP~f~~GDiV~V~-~~i~E~K~RiQ~ 167 (236)
+.+.|.+||+|+|. .++.+-+.+.|.
T Consensus 57 ~~~~~~~G~~V~i~n~~v~~~~G~~~L 83 (109)
T 2kbn_A 57 ELPLLEQGESYLLRSVVVGEYNDRFQV 83 (109)
T ss_dssp CCCCCCTTCEEEEEEEEEEEETTEEEE
T ss_pred cccccCCCCEEEEEEEEEEEECCEEEE
Confidence 56899999999998 666653333333
No 25
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=33.16 E-value=26 Score=30.55 Aligned_cols=35 Identities=29% Similarity=0.553 Sum_probs=26.8
Q ss_pred CCCCCCCCEEEEEEEeecCccccceE----EEEEEEEec
Q 026573 143 IPDIRTGDVVEIKLEVPENRRRLSIY----KGIVMSRQN 177 (236)
Q Consensus 143 iP~f~~GDiV~V~~~i~E~K~RiQ~F----~GVVIa~r~ 177 (236)
-|.|.+||.|+|.-..+..-.|+..| .|+|....+
T Consensus 136 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~g 174 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHG 174 (226)
T ss_dssp CCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEE
T ss_pred CCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEec
Confidence 57899999999985555466676665 688887775
No 26
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=32.55 E-value=87 Score=24.26 Aligned_cols=47 Identities=34% Similarity=0.446 Sum_probs=32.6
Q ss_pred CCCCCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCCeeEE
Q 026573 144 PDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVE 196 (236)
Q Consensus 144 P~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVE 196 (236)
-.+.+||.|.+.+.+++..+++ ...|.|+-++-.|-.. +.-.|+||+
T Consensus 40 ~~~~~G~~V~l~l~Lp~~~~~i-~~~GkVvWi~p~~~~~-----~~p~G~GVq 86 (117)
T 3cnr_A 40 KRYMLGDEVFLLLTLPDSSERL-PVAGKVIWTTPAGAQG-----NRAAGIGVQ 86 (117)
T ss_dssp SCCCTTCEEEEEEECTTCSCEE-EEEEEEEEEECC-----------CCEEEEE
T ss_pred CccCCCCEEEEEEEcCCCCceE-EEEEEEEEecCCCCCC-----CCCCceEEE
Confidence 3589999999999998754443 4679999998665432 235788887
No 27
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=32.47 E-value=37 Score=26.36 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=20.4
Q ss_pred CCCCCEEEEEEEeecCccccceEEEEEE
Q 026573 146 IRTGDVVEIKLEVPENRRRLSIYKGIVM 173 (236)
Q Consensus 146 f~~GDiV~V~~~i~E~K~RiQ~F~GVVI 173 (236)
..|||++.+++.+...+..+-.|+|.+.
T Consensus 107 V~PGd~L~i~~~v~~~~~~~~~~~~~~~ 134 (152)
T 4i83_A 107 VIPGDQLVFEVELLTSRRGIGKFNAVAK 134 (152)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEeeCCEEEEEEEEE
Confidence 5799999999988765455556666543
No 28
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=32.01 E-value=28 Score=30.16 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=26.7
Q ss_pred CCCCCCCCCEEEEEEEeecCccccceE----EEEEEEEec
Q 026573 142 PIPDIRTGDVVEIKLEVPENRRRLSIY----KGIVMSRQN 177 (236)
Q Consensus 142 ~iP~f~~GDiV~V~~~i~E~K~RiQ~F----~GVVIa~r~ 177 (236)
.-|.|.+||.|+|+-..+..-.|+..| .|+|....+
T Consensus 127 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 166 (219)
T 3qyh_B 127 ARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHG 166 (219)
T ss_dssp SCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEec
Confidence 348899999999976555466666665 688877765
No 29
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=30.00 E-value=31 Score=30.12 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=26.4
Q ss_pred CCCCCCCCEEEEEEEeecCccccceE----EEEEEEEec
Q 026573 143 IPDIRTGDVVEIKLEVPENRRRLSIY----KGIVMSRQN 177 (236)
Q Consensus 143 iP~f~~GDiV~V~~~i~E~K~RiQ~F----~GVVIa~r~ 177 (236)
-|.|.+||.|+|+-..+..-.|+..| .|+|....+
T Consensus 139 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g 177 (229)
T 3hht_B 139 SPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYG 177 (229)
T ss_dssp CCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEec
Confidence 48899999999976555466666655 688888765
No 30
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=28.58 E-value=49 Score=25.33 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=18.8
Q ss_pred CCCCCCEEEEEEEeecCcccc--ceEEEEE
Q 026573 145 DIRTGDVVEIKLEVPENRRRL--SIYKGIV 172 (236)
Q Consensus 145 ~f~~GDiV~V~~~i~E~K~Ri--Q~F~GVV 172 (236)
.++|||+|++++.+.+.+.+. -.+.+.+
T Consensus 106 pV~pGd~l~~~~~v~~~~~~~g~~~~~~~~ 135 (154)
T 1z6b_A 106 PVLPGDTLTMQANLISFKSSLGIAKLSGVG 135 (154)
T ss_dssp CCCTTCEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEeeCCceEEEEEEEE
Confidence 478899999999887633222 4555544
No 31
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Probab=28.58 E-value=16 Score=34.26 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=9.7
Q ss_pred ccchhhhhhcCCCCC--CccchhhHHHHHH
Q 026573 103 SEDKVEEEEVKAPRK--PRVKLGDIMGILN 130 (236)
Q Consensus 103 ~~~~~~~~~~~pp~k--~r~KL~dlM~iLe 130 (236)
+++.+++..++|+++ .|+.+|.+++.|.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (420)
T 1so2_A 384 DEEMENNLNPKPPRRKSRRRIFCQLMHHLT 413 (420)
T ss_dssp ----------------CCSSEECHHHHHHH
T ss_pred hhhhhcccCcccccccccchhHhHHHHHHH
Confidence 334444556665554 3567899998774
No 32
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=28.01 E-value=57 Score=23.88 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=16.1
Q ss_pred CCCCCCEEEEEEEeecCccccceEE
Q 026573 145 DIRTGDVVEIKLEVPENRRRLSIYK 169 (236)
Q Consensus 145 ~f~~GDiV~V~~~i~E~K~RiQ~F~ 169 (236)
.|.+||+|.|+=++.+...+++...
T Consensus 63 ~i~~Gdvv~i~g~v~~~~~~~el~~ 87 (97)
T 3e0e_A 63 EVKKGDIAEVSGYVKQGYSGLEISV 87 (97)
T ss_dssp CCCTTCEEEEEEEEEEC--CEEEEE
T ss_pred ccCCCCEEEEEEEEEEcCCeEEEEE
Confidence 7999999999766655444444433
No 33
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=26.58 E-value=53 Score=27.86 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=26.5
Q ss_pred CCCCCC-CCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEE
Q 026573 141 RPIPDI-RTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRI 186 (236)
Q Consensus 141 k~iP~f-~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtL 186 (236)
..+|.+ .+||+|.++=. ++|.|.|-+.++-+.+. +|.+
T Consensus 95 e~LP~V~~~GDIIlL~rv------kiq~~~g~~~~v~~~~~--s~a~ 133 (187)
T 1qzg_A 95 NDLPVIKQVGQPLLLHQI------TLRSYRDRTQGLSKDQF--RYAL 133 (187)
T ss_dssp SCSCCCCSTTCEEEEEEE------EEEEETTEEEEEEEEEE--EEEE
T ss_pred hhCCCCCCCCCEEEEEEE------EEEEECCeEEEEEcCce--eEEE
Confidence 479998 99999999832 24567777777666542 4544
No 34
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.09 E-value=1.1e+02 Score=24.99 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=29.6
Q ss_pred CCCCCCCCCCEEEEEEEeecCccccceEEEEEEEEec
Q 026573 141 RPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN 177 (236)
Q Consensus 141 k~iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~ 177 (236)
+.+|.-.+||+|.|.++--....|-+.+.+||+..+.
T Consensus 51 ~r~~~A~iGD~IvvsVKk~~p~~kg~V~kAVIVRtkk 87 (141)
T 3j21_J 51 RRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRK 87 (141)
T ss_dssp TCCCCBCSSCEEEEEEEEECTTTTTCEEEEEEEECSS
T ss_pred cccccCCcCCEEEEEEEecCCCCcCceEEEEEEEeCC
Confidence 4578889999999998765434468999999998764
No 35
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=25.88 E-value=82 Score=23.01 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=17.5
Q ss_pred CCCCCCEEEEEEEeec--CccccceEEEE
Q 026573 145 DIRTGDVVEIKLEVPE--NRRRLSIYKGI 171 (236)
Q Consensus 145 ~f~~GDiV~V~~~i~E--~K~RiQ~F~GV 171 (236)
..++||+|.++.++.+ .+.+...+.+.
T Consensus 72 Pv~~Gd~l~~~a~v~~~~~~~~~~~v~~~ 100 (121)
T 2f41_A 72 QVKQGERVVAKAKVTAVEKEKGRTVVEVN 100 (121)
T ss_dssp CCBTTCEEEEEEEEEEECSSSSCEEEEEE
T ss_pred CcCCCCEEEEEEEEEEEEccCCEEEEEEE
Confidence 4678999999988873 34444344443
No 36
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=25.77 E-value=1.6e+02 Score=24.75 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCCCCCCCCEEEEEEEeecCccccceEEEEEEEEec
Q 026573 142 PIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN 177 (236)
Q Consensus 142 ~iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~ 177 (236)
+.-++.+|++|.|.|.+.+.|+|---|-.-|..++.
T Consensus 89 ~w~~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~~~ 124 (161)
T 3db3_A 89 KWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKRE 124 (161)
T ss_dssp CGGGCCTTCEEEEEECSSSTTSCCEEEEEEEEEEEE
T ss_pred cHHHCCcCcEEEEecCCCCccccceeEEEEEeeehh
Confidence 355799999999999998899998889998888764
No 37
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=25.05 E-value=46 Score=26.45 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCCCCCCCEEEEEEEeecCccccceEEEEEEEEe----cC-C-ccceEEEEeeeCCeeEEEEeecc
Q 026573 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQ----NA-G-IHTTIRIRRIIAGIGVEIVFPLY 202 (236)
Q Consensus 143 iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r----~~-G-l~sTFtLRnii~GvGVEr~FpLy 202 (236)
..+|+.|.+|.+.= +.| .|+... |+ | --..+.+||+..|.-+|.+|+-.
T Consensus 9 a~~lkkG~~i~~~g---------~p~--~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~ 63 (138)
T 1iz6_A 9 VSKLKPGRYIIIDD---------EPC--RIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTS 63 (138)
T ss_dssp GGGCCTTSEEEETT---------EEE--EEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETT
T ss_pred HHHccCCCEEEECC---------EEE--EEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCC
Confidence 35789999887631 011 222222 22 2 22467799999999999999954
No 38
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=24.69 E-value=2.2e+02 Score=21.39 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=34.0
Q ss_pred CCCCCCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeec
Q 026573 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL 201 (236)
Q Consensus 143 iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpL 201 (236)
.+.|.+||.|.-.+.. -+.|.+.|.++.+.| +++|+ +.+ |+..+...
T Consensus 19 ~~~f~vGd~VlArW~D------~~yYPAkI~sV~~~~---~YtV~--F~D-G~~etvk~ 65 (85)
T 3qii_A 19 SSEFQINEQVLACWSD------CRFYPAKVTAVNKDG---TYTVK--FYD-GVVQTVKH 65 (85)
T ss_dssp --CCCTTCEEEEECTT------SCEEEEEEEEECTTS---EEEEE--ETT-SCEEEEEG
T ss_pred CcccccCCEEEEEeCC------CCEeeEEEEEECCCC---eEEEE--EeC-CCeEEecH
Confidence 5789999999999921 257999999999875 57773 455 77665543
No 39
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=24.65 E-value=1.9e+02 Score=20.54 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=35.5
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCC
Q 026573 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAG 192 (236)
Q Consensus 121 KL~dlM~iLe~~~ie~~~~kk~iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~G 192 (236)
+|-.||+-|+ +..+... ...-..++||.+.+.+.. + -+-|.+.|+++... .++.|+=+=.|
T Consensus 6 ~Le~Lm~~m~--~~y~~~~-~~~~~~~~G~~c~a~~~~--d---~~wyRA~I~~~~~~---~~~~V~fvDyG 66 (94)
T 3fdr_A 6 QLDKLVNEMT--QHYENSV-PEDLTVHVGDIVAAPLPT--N---GSWYRARVLGTLEN---GNLDLYFVDFG 66 (94)
T ss_dssp HHHHHHHHHH--HHHTTCC-CCCCCCCTTCEEEEEETT--T---TEEEEEEEEEECTT---SCEEEEETTTC
T ss_pred HHHHHHHHHH--HHHhcCC-CCCCCCCCCCEEEEEECC--C---CeEEEEEEEEECCC---CeEEEEEEcCC
Confidence 4556666542 2222211 122257899999998732 1 24799999999653 35666544333
No 40
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=24.51 E-value=95 Score=25.10 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCCCCCCCCCEEEEEEEeecCccccceEEEEEEEEec
Q 026573 141 RPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN 177 (236)
Q Consensus 141 k~iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~ 177 (236)
+.+|.-.+||+|.|.++--....|-+.+.+||+..+.
T Consensus 42 ~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AVIVRtkk 78 (132)
T 1vq8_K 42 NRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRK 78 (132)
T ss_dssp TCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECSS
T ss_pred cccCCCccCcEEEEEEEecCCCCCCcEEEEEEEEcCC
Confidence 4578889999999998765433478999999998763
No 41
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=24.15 E-value=1.2e+02 Score=23.81 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=34.8
Q ss_pred CCCCCCCCEEEEEEEeecCccccceEEEEEEEE----ecCC--ccceEEEEeeeCCeeEEEEeecc----CCccceEE
Q 026573 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSR----QNAG--IHTTIRIRRIIAGIGVEIVFPLY----SPNIKEIK 210 (236)
Q Consensus 143 iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~----r~~G--l~sTFtLRnii~GvGVEr~FpLy----SP~I~~Ie 210 (236)
..+|+.|.+|.+.= +.| .|+.. -|+| --..+.+||++.|.-+|.+|+-. .|.|.+-+
T Consensus 11 ~~~lrkG~~i~~~g---------~p~--~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~ 77 (136)
T 1bkb_A 11 AGELKEGSYVVIDG---------EPC--RVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFT 77 (136)
T ss_dssp GGGCCTTCEEEETT---------EEE--EEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEE
T ss_pred HHHccCCCEEEECC---------EEE--EEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEE
Confidence 35799999887631 011 12222 1332 23467799999999999999943 35554433
No 42
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=24.11 E-value=1.2e+02 Score=25.64 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=26.7
Q ss_pred CCCCCCCCCEEEEEEEeecCccccceEEEEEEEEec
Q 026573 142 PIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQN 177 (236)
Q Consensus 142 ~iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~ 177 (236)
|--...+||||..++++.. ++.|.|+=+-++=
T Consensus 14 DKT~~~VGdII~Atv~vnn----I~nfAGYQvNIKY 45 (166)
T 2bm3_A 14 DRNKGEVGDILIGTVRINN----IKNFAGFQVNIVY 45 (166)
T ss_dssp SCSCCCTTCEEEEEEEEES----CTTEEEEEEEEEC
T ss_pred cCcceeeCCEEEEEEEEcc----cccccceEEEEEE
Confidence 4556799999999999976 7789999888774
No 43
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=23.90 E-value=2e+02 Score=22.68 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=40.4
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCCee
Q 026573 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIG 194 (236)
Q Consensus 121 KL~dlM~iLe~~~ie~~~~kk~iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvG 194 (236)
+|-.+|+.|+. .. +....+...++||.+.+.+... + +-|.|.|+.+...| ++.|+-+=.|.-
T Consensus 27 ~L~~L~~~l~~--~~--~~~p~~~~~~~G~~c~A~~~~d-~----~wyRa~I~~~~~~~---~~~V~fvDyGn~ 88 (169)
T 3ntk_A 27 ALEQMTDKLLD--AE--QDLPAFSDLKEGALCVAQFPED-E----VFYRAQIRKVLDDG---KCEVHFIDFGNN 88 (169)
T ss_dssp HHHHHHHHHHH--HG--GGCCBCCCCCTTCEEEEEETTT-T----EEEEEEEEEECSTT---CEEEEETTTTEE
T ss_pred HHHHHHHHHHH--HH--hcCCCCCCCCCCCEEEEEECCC-C----cEEEEEEEEECCCC---EEEEEEEecCCe
Confidence 35566665542 11 1234456789999999987321 2 47999999998755 678876655543
No 44
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=21.28 E-value=69 Score=22.27 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=15.0
Q ss_pred CCCCCCEEEEEEEeec-Ccccc
Q 026573 145 DIRTGDVVEIKLEVPE-NRRRL 165 (236)
Q Consensus 145 ~f~~GDiV~V~~~i~E-~K~Ri 165 (236)
.|++||.|+|.+.-.. .+.|+
T Consensus 45 ~~~~Gd~V~v~V~~vd~~~~~i 66 (80)
T 2k52_A 45 NLNVGDEIIVQAIDVRPEKREI 66 (80)
T ss_dssp GCCTTCEEEEEEEEEETTTTEE
T ss_pred eeCCCCEEEEEEEEEECCCCEE
Confidence 4999999999976543 44443
No 45
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=20.88 E-value=1.7e+02 Score=27.60 Aligned_cols=65 Identities=25% Similarity=0.421 Sum_probs=38.7
Q ss_pred CCCCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeC--CeeEEEEeeccCCccceEEEeeecccCC
Q 026573 145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIA--GIGVEIVFPLYSPNIKEIKVVSHRKVRR 219 (236)
Q Consensus 145 ~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~--GvGVEr~FpLySP~I~~IeVlrr~KVRR 219 (236)
.+.+||.|+|..... ++ ...|+|++|-....+ +.-+.+=|.-+ ++|+.+ -.|++|+++.++....
T Consensus 11 ~~~~gd~v~~~~~~~--~~-~~~~~g~~~~~~~~~-~~~~~~~kl~~gyn~g~~~------~~~~~~~~~~~~~~~~ 77 (438)
T 1zq1_A 11 NINVGDFVRITKEED--GE-EVTYEGYIMPPYELS-AGDTLVLKLENGYNIGIAL------EKIRRIEVLERAKVKP 77 (438)
T ss_dssp TCCTTCEEEEEEESS--SS-EEECCEEECCCCTTC-CCSEEEEEETTSCEEEEEG------GGEEEEEEEECCCCCC
T ss_pred CCCCCCEEEEEECCC--cc-eeEEEEEEecCcccC-CCCeEEEEccCCceeeech------hhcceEEEeccCCCCc
Confidence 478899999987431 11 247999999654433 23333334443 456642 2466788888764433
Done!