BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026574
(236 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147798253|emb|CAN67613.1| hypothetical protein VITISV_010260 [Vitis vinifera]
Length = 269
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/236 (85%), Positives = 225/236 (95%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MA+RAS+RREVLH+DFLTPPVLKESM+ LEKLAD+KAVAQGGYPQAERCRLSVGH E LT
Sbjct: 34 MAKRASARREVLHTDFLTPPVLKESMIVLEKLADMKAVAQGGYPQAERCRLSVGHSEVLT 93
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ PDIVAAL ITGNFGFQ CSHGDFLG+ILGTGIAREK+GDIILQGEKGAQ L+VPEL D
Sbjct: 94 TAPDIVAALRITGNFGFQSCSHGDFLGAILGTGIAREKLGDIILQGEKGAQVLIVPELVD 153
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L++SLEKVGNVSVSCT++PLLALEYE PRT +FKTIE SLRVDALASAGFKLSRSKLV+
Sbjct: 154 FLVSSLEKVGNVSVSCTKMPLLALEYEEPRTTTFKTIELSLRVDALASAGFKLSRSKLVD 213
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LISNGDVRVNWTTVTKNGTTL+TGD+VSVSGKGR+KIGEINST+KGK+AVELI++L
Sbjct: 214 LISNGDVRVNWTTVTKNGTTLKTGDVVSVSGKGRLKIGEINSTKKGKYAVELIRFL 269
>gi|225461477|ref|XP_002282453.1| PREDICTED: putative RNA-binding protein ylmH [Vitis vinifera]
gi|302142996|emb|CBI20291.3| unnamed protein product [Vitis vinifera]
Length = 321
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/236 (85%), Positives = 225/236 (95%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MA+RAS+RREVLH+DFLTPPVLKESM+ LEKLAD+KAVAQGGYPQAERCRLSVGH E LT
Sbjct: 86 MAKRASARREVLHTDFLTPPVLKESMIVLEKLADMKAVAQGGYPQAERCRLSVGHSEVLT 145
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ PDIVAAL ITGNFGFQ CSHGDFLG+ILGTGIAREK+GDIILQGEKGAQ L+VPEL D
Sbjct: 146 TAPDIVAALRITGNFGFQSCSHGDFLGAILGTGIAREKLGDIILQGEKGAQVLIVPELVD 205
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L++SLEKVGNVSVSCT++PLLALEYE PRT +FKTIE SLRVDALASAGFKLSRSKLV+
Sbjct: 206 FLVSSLEKVGNVSVSCTKMPLLALEYEEPRTTTFKTIELSLRVDALASAGFKLSRSKLVD 265
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LISNGDVRVNWTTVTKNGTTL+TGD+VSVSGKGR+KIGEINST+KGK+AVELI++L
Sbjct: 266 LISNGDVRVNWTTVTKNGTTLKTGDVVSVSGKGRLKIGEINSTKKGKYAVELIRFL 321
>gi|224114944|ref|XP_002316899.1| predicted protein [Populus trichocarpa]
gi|222859964|gb|EEE97511.1| predicted protein [Populus trichocarpa]
Length = 268
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/236 (83%), Positives = 219/236 (92%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MARRAS RREVLH+DFLTPP LKES+ LEKLADVKA+AQGGYPQAERCRLSVGHPE LT
Sbjct: 33 MARRASLRREVLHTDFLTPPTLKESLHVLEKLADVKAIAQGGYPQAERCRLSVGHPETLT 92
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
SDPDIVAALSITGNFGFQ CSHGDFLG+ILGTGIAR K+GDII+ G K AQ L+VP+L D
Sbjct: 93 SDPDIVAALSITGNFGFQLCSHGDFLGAILGTGIARNKLGDIIVLGGKRAQVLLVPDLVD 152
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+++SL+KVG+VSVSCT IPL A+EYEPPRTKSFKT+EASLRVDALASAGFK+SRSKLV+
Sbjct: 153 YIVSSLDKVGDVSVSCTPIPLHAIEYEPPRTKSFKTVEASLRVDALASAGFKISRSKLVD 212
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LISN DVRVNWTT+TKN TTL+TGD+VSVSGKGR+KIGEIN+TRKGKFAVELI YL
Sbjct: 213 LISNKDVRVNWTTITKNNTTLKTGDVVSVSGKGRLKIGEINTTRKGKFAVELIHYL 268
>gi|359807576|ref|NP_001241156.1| uncharacterized protein LOC100793767 [Glycine max]
gi|255642537|gb|ACU21532.1| unknown [Glycine max]
Length = 324
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/236 (80%), Positives = 221/236 (93%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MARRAS +RE+LH+DFLTPPVLKESM LEKLADVKA+AQGGYPQAERCR+SVGHPE LT
Sbjct: 89 MARRASLKREILHTDFLTPPVLKESMQVLEKLADVKAIAQGGYPQAERCRISVGHPEELT 148
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
SDPDI++ALSITGNF F+PCSHGDFLGSILGTGI REK+GDIILQGE+GAQ +VVPEL +
Sbjct: 149 SDPDIISALSITGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQGEQGAQIIVVPELVE 208
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L+++L KV NV VSCT+IPL++L+YEPPRTKSFKTIEASLRVDALASAGFK+SRSKLV+
Sbjct: 209 FLMSTLVKVRNVPVSCTKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKVSRSKLVD 268
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+ISNGDVR+NW VT GTTL++GDIVS+SGKGR+KIGEINST+KGKFAVELI+YL
Sbjct: 269 MISNGDVRINWIPVTTKGTTLKSGDIVSISGKGRLKIGEINSTKKGKFAVELIRYL 324
>gi|449457021|ref|XP_004146247.1| PREDICTED: putative RNA-binding protein YlmH-like [Cucumis sativus]
gi|449495519|ref|XP_004159865.1| PREDICTED: putative RNA-binding protein YlmH-like [Cucumis sativus]
Length = 319
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/236 (80%), Positives = 224/236 (94%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MA+R+ SRREVLH++FLTPPV+KESM+A++KLADVKA+AQGGYP+AERCR+SVGH + LT
Sbjct: 84 MAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELT 143
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
SDPDI++ALSITGNF F PCSHGDFLGSILGTGIAREK+GDI+LQ E GAQ ++VPEL D
Sbjct: 144 SDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPELVD 203
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+LI+SL KVGNV+VSCTRIPL ALEYEPP+TK+FKTIEASLRVDA+ASAGFK+SRSKLV+
Sbjct: 204 FLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVD 263
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LIS+GDVRVNWT++TKNGT L+TGDIVSVSGKGR+KIGEINST+KGKFAVELI+Y+
Sbjct: 264 LISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV 319
>gi|18404337|ref|NP_564622.1| RNA-binding S4 domain-containing protein [Arabidopsis thaliana]
gi|16648939|gb|AAL24321.1| Unknown protein [Arabidopsis thaliana]
gi|24899783|gb|AAN65106.1| Unknown protein [Arabidopsis thaliana]
gi|27311617|gb|AAO00774.1| Unknown protein [Arabidopsis thaliana]
gi|30984534|gb|AAP42730.1| At1g53120 [Arabidopsis thaliana]
gi|332194772|gb|AEE32893.1| RNA-binding S4 domain-containing protein [Arabidopsis thaliana]
Length = 320
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 186/236 (78%), Positives = 222/236 (94%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MARRASS+REVLH+DFLTPP++KES+ LEK ADVK VAQGGYP+AERCR+S+GHP+ LT
Sbjct: 85 MARRASSKREVLHTDFLTPPIVKESVSLLEKFADVKIVAQGGYPEAERCRISIGHPDVLT 144
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
SDPDIVAALSITGNFGFQPCSHGDFLG+ILGTGI+REK+GDI++Q EKGAQ L+VPEL D
Sbjct: 145 SDPDIVAALSITGNFGFQPCSHGDFLGAILGTGISREKLGDILIQEEKGAQVLIVPELVD 204
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+++T+L+KVGNV V+C++IPLLALEYEPPRT SFKT+EASLR+DA+ASAGFK+SRSKLV+
Sbjct: 205 FVVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVD 264
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LIS+ DVRVNW TVTKNGT ++TGD+VSVSGKGR+KIGEIN T+KGKFAVE+I+YL
Sbjct: 265 LISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKIGEINETKKGKFAVEIIRYL 320
>gi|357452969|ref|XP_003596761.1| hypothetical protein MTR_2g085340 [Medicago truncatula]
gi|355485809|gb|AES67012.1| hypothetical protein MTR_2g085340 [Medicago truncatula]
Length = 325
Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust.
Identities = 181/236 (76%), Positives = 221/236 (93%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MARRAS +RE+LH++FLTPPVLKESM LEKLAD+KA+AQGGYPQAERCR+SVGHP+ LT
Sbjct: 90 MARRASLKREILHTNFLTPPVLKESMQVLEKLADIKALAQGGYPQAERCRISVGHPDELT 149
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
SDPD+++ALSITGNF F+PCSHGDFLGSILGTGIAREK+GDIILQGE+GAQ +VVPEL +
Sbjct: 150 SDPDVISALSITGNFQFEPCSHGDFLGSILGTGIAREKVGDIILQGEQGAQIIVVPELVE 209
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L ++L+KV NV V+CT+IPL++L+YEPPRTKSFKTIEASLRVDA+ASAGFK+SRSKLV+
Sbjct: 210 FLTSALDKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDAVASAGFKISRSKLVD 269
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+ISNGDVR+NW +T GTT+++GD+VSVSG GR+KIGE+N+T+KGKFAVELI+YL
Sbjct: 270 MISNGDVRINWIPITTKGTTVKSGDLVSVSGLGRLKIGEVNTTKKGKFAVELIRYL 325
>gi|217074322|gb|ACJ85521.1| unknown [Medicago truncatula]
Length = 325
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 181/236 (76%), Positives = 221/236 (93%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MARRAS +RE+LH++FLTPPVLKESM LEKLAD+KA+AQGGYPQAERCR+SVGHP+ LT
Sbjct: 90 MARRASLKREILHTNFLTPPVLKESMRVLEKLADIKALAQGGYPQAERCRISVGHPDELT 149
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
SDPD+++ALSITGNF F+PCSHGDFLGSILGTGIAREK+GDIILQGE+GAQ +VVPEL +
Sbjct: 150 SDPDVISALSITGNFQFEPCSHGDFLGSILGTGIAREKVGDIILQGEQGAQIIVVPELVE 209
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L ++L+KV NV V+CT+IPL++L+YEPPRTKSFKTIEASLRVDA+ASAGFK+SRSKLV+
Sbjct: 210 FLTSALDKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDAVASAGFKISRSKLVD 269
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+ISNGDVR+NW +T GTT+++GD+VSVSG GR+KIGE+N+T+KGKFAVELI+YL
Sbjct: 270 MISNGDVRINWIPITTKGTTVKSGDLVSVSGLGRLKIGEVNTTKKGKFAVELIRYL 325
>gi|242054411|ref|XP_002456351.1| hypothetical protein SORBIDRAFT_03g034470 [Sorghum bicolor]
gi|241928326|gb|EES01471.1| hypothetical protein SORBIDRAFT_03g034470 [Sorghum bicolor]
Length = 304
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/236 (76%), Positives = 217/236 (91%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MA+RAS RR+V H++FLTPP++KE+M+A+EKLAD+KAVAQGGYPQAERCR+SVGHP+ +T
Sbjct: 69 MAQRASQRRDVFHTNFLTPPIVKEAMLAVEKLADIKAVAQGGYPQAERCRISVGHPDFMT 128
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
S+PD+VAALSI+GNF +PCSHGDFLG+ILGTGI REK+GDI+LQGE+GAQ LV P L D
Sbjct: 129 SNPDVVAALSISGNFRLEPCSHGDFLGAILGTGITREKVGDILLQGERGAQVLVDPGLVD 188
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YLI++LEKVG V VSCT+IPLLALEYEPPRT SFKT+E+SLRVDALASAGFK+SR+KL +
Sbjct: 189 YLISTLEKVGKVGVSCTQIPLLALEYEPPRTNSFKTVESSLRVDALASAGFKISRTKLAS 248
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LIS+GDVRVNWT TKNG TL++GD+VSVSG GR+KIGEI +TRKGK+AVELI+YL
Sbjct: 249 LISSGDVRVNWTPTTKNGVTLKSGDVVSVSGMGRLKIGEIVTTRKGKYAVELIRYL 304
>gi|212274707|ref|NP_001130102.1| uncharacterized protein LOC100191195 [Zea mays]
gi|194688290|gb|ACF78229.1| unknown [Zea mays]
gi|223975061|gb|ACN31718.1| unknown [Zea mays]
gi|414880496|tpg|DAA57627.1| TPA: RNA-binding S4 isoform 1 [Zea mays]
gi|414880497|tpg|DAA57628.1| TPA: RNA-binding S4 isoform 2 [Zea mays]
gi|414880498|tpg|DAA57629.1| TPA: RNA-binding S4 isoform 3 [Zea mays]
Length = 304
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/236 (76%), Positives = 213/236 (90%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MA RAS RR V H++FLTPP++KE+M+ALEK AD KAVAQGGYPQAERCR+SVGHP+ +T
Sbjct: 69 MAERASQRRNVFHTNFLTPPIVKEAMLALEKFADTKAVAQGGYPQAERCRISVGHPDVMT 128
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
S+PD+VAALSI+GNF + CSHGDFLG+ILGTGI REK+GDI+LQGE+GAQ LV PEL D
Sbjct: 129 SNPDVVAALSISGNFRLESCSHGDFLGAILGTGITREKVGDILLQGERGAQVLVDPELVD 188
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YLI++LEKVG V VSCT+IPLLALEYEPPRT SFKT+E+SLRVDALASAGFK+SR+KL +
Sbjct: 189 YLISTLEKVGKVGVSCTQIPLLALEYEPPRTNSFKTVESSLRVDALASAGFKISRTKLAS 248
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LIS+GDVRVNWT TKNG TL++GD+VSVSG GR+KIGEI +TRKGK+AVELI+YL
Sbjct: 249 LISSGDVRVNWTPTTKNGVTLKSGDVVSVSGMGRLKIGEIVTTRKGKYAVELIRYL 304
>gi|218189042|gb|EEC71469.1| hypothetical protein OsI_03722 [Oryza sativa Indica Group]
Length = 305
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/236 (75%), Positives = 215/236 (91%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MA+RAS RR+V H++FLTPP++KE M+A+EKLAD+KAVAQGGYPQAERCR+SVGHP+ +T
Sbjct: 70 MAQRASQRRDVFHTNFLTPPIVKECMLAIEKLADIKAVAQGGYPQAERCRVSVGHPDCMT 129
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
S+PD+VAALSI+GNF +PCSHGDFLG+ILGTGI R+K+GDI+LQGE+GAQ LV PEL D
Sbjct: 130 SNPDVVAALSISGNFRLEPCSHGDFLGAILGTGITRDKVGDILLQGERGAQVLVDPELVD 189
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YL ++LEKVG V VSCT+IPLLALEYEPPRTKSFKT+E+SLRVDAL SAGFK+SR+KL +
Sbjct: 190 YLTSTLEKVGKVGVSCTQIPLLALEYEPPRTKSFKTVESSLRVDALGSAGFKISRTKLAS 249
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LIS GDVRVNW+ V+KNG TL+ GD+VSVSG GR+KIGEI +TRKGK+AVELI+YL
Sbjct: 250 LISAGDVRVNWSPVSKNGVTLKAGDVVSVSGMGRLKIGEIVTTRKGKYAVELIRYL 305
>gi|297597609|ref|NP_001044235.2| Os01g0747700 [Oryza sativa Japonica Group]
gi|57899502|dbj|BAD86964.1| S4 domain protein-like [Oryza sativa Japonica Group]
gi|255673682|dbj|BAF06149.2| Os01g0747700 [Oryza sativa Japonica Group]
Length = 305
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/236 (75%), Positives = 215/236 (91%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MA+RAS RR+V H++FLTPP++KE M+A+EKLAD+KAVAQGGYPQAERCR+SVGHP+ +T
Sbjct: 70 MAQRASQRRDVFHTNFLTPPIVKECMLAIEKLADIKAVAQGGYPQAERCRVSVGHPDCMT 129
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
S+PD+VAALSI+GNF +PCSHGDFLG+ILGTGI R+K+GDI+LQGE+GAQ LV PEL D
Sbjct: 130 SNPDVVAALSISGNFRLEPCSHGDFLGAILGTGITRDKVGDILLQGERGAQVLVDPELVD 189
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YL ++LEKVG V VSCT+IPLLALEYEPPRTKSFKT+E+SLRVDAL SAGFK+SR+KL +
Sbjct: 190 YLTSTLEKVGKVGVSCTQIPLLALEYEPPRTKSFKTVESSLRVDALGSAGFKISRTKLAS 249
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LIS GDVRVNW+ V+KNG TL+ GD+VSVSG GR+KIGEI +TRKGK+AVELI+YL
Sbjct: 250 LISAGDVRVNWSPVSKNGVTLKAGDVVSVSGMGRLKIGEIVTTRKGKYAVELIRYL 305
>gi|195639066|gb|ACG39001.1| RNA-binding S4 [Zea mays]
Length = 304
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/236 (75%), Positives = 213/236 (90%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MA RAS RR+V H++FLTPP++KE+M+ALEK AD KAVAQGGYPQAERCR+SVGHP+ +T
Sbjct: 69 MAERASQRRDVFHTNFLTPPIVKETMLALEKFADTKAVAQGGYPQAERCRISVGHPDVMT 128
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
S+PD+VAALSI+GNF + CSHGDFLG+ILGTGI REK+GDI+LQGE+GAQ LV PEL D
Sbjct: 129 SNPDVVAALSISGNFRLESCSHGDFLGAILGTGITREKVGDILLQGERGAQVLVDPELVD 188
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YLI++LEKVG V VSCT+IPLLALEYEPPRT SFKT+E+SLRVDALASAGFK+SR+KL +
Sbjct: 189 YLISTLEKVGKVGVSCTQIPLLALEYEPPRTNSFKTVESSLRVDALASAGFKISRTKLAS 248
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LIS+GDVRVNWT TKNG TL++ D+VSVSG GR+KIGEI +TRKGK+AVELI+YL
Sbjct: 249 LISSGDVRVNWTPTTKNGVTLKSRDVVSVSGMGRLKIGEIVTTRKGKYAVELIRYL 304
>gi|326523405|dbj|BAJ88743.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 305
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 169/236 (71%), Positives = 214/236 (90%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MA+RAS RR+V H+ FLTPP++ E+M+A+EKLAD+KA+AQGGYPQAERCR+SVGHP+++
Sbjct: 70 MAQRASQRRDVFHTSFLTPPIITEAMLAIEKLADIKAIAQGGYPQAERCRISVGHPDSMR 129
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+DPD+VAALSI+GNF +PCSHGDFLG+ILG GI R+K+GDI+LQGE+GAQ LV PEL D
Sbjct: 130 NDPDVVAALSISGNFRLEPCSHGDFLGAILGAGITRDKVGDILLQGERGAQVLVDPELVD 189
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YL ++LEKVG V VSCT+IPLLA+EYEPPRTKSFKT+E+SLRVDA+ASAGFK+SR+KL +
Sbjct: 190 YLTSTLEKVGKVGVSCTQIPLLAIEYEPPRTKSFKTVESSLRVDAVASAGFKISRTKLGS 249
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+IS+GDVRVNW+ V+K+G TL+ GD+VSVSG GR+KIGEI +T+KGK+ V+LIQYL
Sbjct: 250 MISSGDVRVNWSLVSKSGATLKAGDVVSVSGMGRLKIGEIVTTKKGKYVVQLIQYL 305
>gi|297847696|ref|XP_002891729.1| hypothetical protein ARALYDRAFT_314636 [Arabidopsis lyrata subsp.
lyrata]
gi|297337571|gb|EFH67988.1| hypothetical protein ARALYDRAFT_314636 [Arabidopsis lyrata subsp.
lyrata]
Length = 759
Score = 358 bits (920), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 167/229 (72%), Positives = 196/229 (85%), Gaps = 23/229 (10%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MARRA+S+REVLH+DFLTPP++KES++ L K ADVK VAQGGYP+AERCR+S+GHP+ LT
Sbjct: 523 MARRAASKREVLHTDFLTPPIVKESVLVLGKFADVKIVAQGGYPEAERCRISIGHPDVLT 582
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+DPDIVAALSITGNFGFQPCSHGDFLG+ILGTGI+REK+GDI++Q
Sbjct: 583 NDPDIVAALSITGNFGFQPCSHGDFLGAILGTGISREKLGDILIQ--------------- 627
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
VGNV V+CT+IPLLALEYEPPRT SFKT+EASLR+DA+ASAGFK+SRSKLV+
Sbjct: 628 --------VGNVGVTCTKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVD 679
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFA 229
LISN DVRVNW TVTKNGTT++TGD+VSVSGKGR+KIGEIN T+KGKFA
Sbjct: 680 LISNKDVRVNWATVTKNGTTVKTGDVVSVSGKGRLKIGEINETKKGKFA 728
>gi|222619243|gb|EEE55375.1| hypothetical protein OsJ_03443 [Oryza sativa Japonica Group]
Length = 290
Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 163/217 (75%), Positives = 197/217 (90%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MA+RAS RR+V H++FLTPP++KE M+A+EKLAD+KAVAQGGYPQAERCR+SVGHP+ +T
Sbjct: 70 MAQRASQRRDVFHTNFLTPPIVKECMLAIEKLADIKAVAQGGYPQAERCRVSVGHPDCMT 129
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
S+PD+VAALSI+GNF +PCSHGDFLG+ILGTGI R+K+GDI+LQGE+GAQ LV PEL D
Sbjct: 130 SNPDVVAALSISGNFRLEPCSHGDFLGAILGTGITRDKVGDILLQGERGAQVLVDPELVD 189
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YL ++LEKVG V VSCT+IPLLALEYEPPRTKSFKT+E+SLRVDAL SAGFK+SR+KL +
Sbjct: 190 YLTSTLEKVGKVGVSCTQIPLLALEYEPPRTKSFKTVESSLRVDALGSAGFKISRTKLAS 249
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
LIS GDVRVNW+ V+KNG TL+ GD+VSVSG GR+KI
Sbjct: 250 LISAGDVRVNWSPVSKNGVTLKAGDVVSVSGMGRLKI 286
>gi|116784861|gb|ABK23497.1| unknown [Picea sitchensis]
Length = 332
Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 161/235 (68%), Positives = 208/235 (88%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A++A+S RE+ HSDFL PPV+++++ A++KL+DV+A+ QGGYPQAERCRLS+GH + ++S
Sbjct: 98 AQKAASGREIFHSDFLMPPVVEDALSAIKKLSDVEALVQGGYPQAERCRLSIGHTDVISS 157
Query: 62 DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
PD V+ALSI+GNF F P SHGDFLG++L TGI REK+GDI+LQGEKGAQ +VVPEL DY
Sbjct: 158 APDAVSALSISGNFTFDPASHGDFLGAVLATGIRREKVGDILLQGEKGAQIIVVPELVDY 217
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
+++SL +V NV VSC+ IPLLALE++PPRTK K++EASLRVDA+ASAGF++SRSKLVNL
Sbjct: 218 IVSSLTQVHNVPVSCSPIPLLALEFQPPRTKVLKSVEASLRVDAIASAGFQMSRSKLVNL 277
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS GDVRVNW+ VTKNGT L+TGDI+S+ GKGR+++GEI +TRKGKFAV+LI+YL
Sbjct: 278 ISGGDVRVNWSEVTKNGTLLKTGDIISIKGKGRVQLGEIKTTRKGKFAVDLIRYL 332
>gi|9454543|gb|AAF87866.1|AC022520_10 Unknown protein [Arabidopsis thaliana]
Length = 773
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 163/226 (72%), Positives = 191/226 (84%), Gaps = 23/226 (10%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MARRASS+REVLH+DFLTPP++KES+ LEK ADVK VAQGGYP+AERCR+S+GHP+ LT
Sbjct: 537 MARRASSKREVLHTDFLTPPIVKESVSLLEKFADVKIVAQGGYPEAERCRISIGHPDVLT 596
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
SDPDIVAALSITGNFGFQPCSHGDFLG+ILGTGI+REK+GDI++Q
Sbjct: 597 SDPDIVAALSITGNFGFQPCSHGDFLGAILGTGISREKLGDILIQ--------------- 641
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
VGNV V+C++IPLLALEYEPPRT SFKT+EASLR+DA+ASAGFK+SRSKLV+
Sbjct: 642 --------VGNVGVTCSKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVD 693
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
LIS+ DVRVNW TVTKNGT ++TGD+VSVSGKGR+KIGEIN T+K
Sbjct: 694 LISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKIGEINETKKA 739
>gi|357136417|ref|XP_003569801.1| PREDICTED: putative RNA-binding protein ylmH-like [Brachypodium
distachyon]
Length = 222
Score = 342 bits (878), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 156/216 (72%), Positives = 193/216 (89%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MA AS RR+V H+ FLTPPV+KE+M+A+EKLA +KAVAQGGYPQAERCR+SVGHP+++
Sbjct: 6 MAETASQRRDVFHTSFLTPPVIKEAMLAIEKLAGIKAVAQGGYPQAERCRISVGHPDSMK 65
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
S+PD+VAALSI+GNF +PCSHGDFLG+ILG GI REK+GDI+LQ E+GAQ LV P+L D
Sbjct: 66 SNPDVVAALSISGNFRLEPCSHGDFLGAILGAGITREKVGDILLQEERGAQVLVDPDLVD 125
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YL ++LEKVG V VSCT+IPLLALEYEPP+TKSFKT+E+SLRVDA+ASAGFK+SR+KL +
Sbjct: 126 YLTSTLEKVGKVGVSCTQIPLLALEYEPPKTKSFKTVESSLRVDAVASAGFKISRTKLGS 185
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
LIS+GDVRVNW+ V+K+G TL+ GD+VSVSG GR+K
Sbjct: 186 LISSGDVRVNWSPVSKSGATLKAGDVVSVSGMGRLK 221
>gi|255586534|ref|XP_002533905.1| RNA binding protein, putative [Ricinus communis]
gi|223526138|gb|EEF28479.1| RNA binding protein, putative [Ricinus communis]
Length = 231
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 155/182 (85%), Positives = 172/182 (94%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MARRASSRRE LH+DFLTPP+LKESM+ LEKLAD+KAV QGGYPQAERCRLSVGHPEAL
Sbjct: 49 MARRASSRREALHTDFLTPPILKESMLLLEKLADIKAVGQGGYPQAERCRLSVGHPEALM 108
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+DPDI+AALSITGNF FQPCSHGDFLGSILGTGI+REK+GDIILQGEKGAQ L VPEL D
Sbjct: 109 NDPDIIAALSITGNFAFQPCSHGDFLGSILGTGISREKVGDIILQGEKGAQILTVPELVD 168
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
++++SL+KVGNVSVSC RIPLLALEYEPPRT++F TIEASLRVDALASAGFK+SRSKLV+
Sbjct: 169 FIMSSLDKVGNVSVSCARIPLLALEYEPPRTRTFNTIEASLRVDALASAGFKISRSKLVD 228
Query: 181 LI 182
LI
Sbjct: 229 LI 230
>gi|168015016|ref|XP_001760047.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688797|gb|EDQ75172.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 276
Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/244 (59%), Positives = 186/244 (76%), Gaps = 9/244 (3%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
AR A+ R EV HS FLTPPVL +++ A+ +L+DV + GGY QAERCRLSVGH E + +
Sbjct: 33 ARTAADRWEVAHSAFLTPPVLNDALTAVRRLSDVGVLVSGGYAQAERCRLSVGHVETIEA 92
Query: 62 D---------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 112
P VAALS++GNF F+ +HGDFLGSILGTG+ R+K+GDII+QGEKGAQ
Sbjct: 93 GSLEGGNAGYPGAVAALSVSGNFMFESATHGDFLGSILGTGVTRDKVGDIIMQGEKGAQI 152
Query: 113 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 172
LVVPEL ++ +SL +V NV+V + IPL AL+ + PR +FK++EASLRVDAL SAGF+
Sbjct: 153 LVVPELVEFFCSSLVQVRNVAVQTSAIPLSALQVKAPRVDTFKSVEASLRVDALTSAGFR 212
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+SRSKL LIS+G+VRVNW VTK TL+TGD+VSV GKGRI++GEI T+KG++AVEL
Sbjct: 213 MSRSKLAELISSGEVRVNWKEVTKTSLTLKTGDVVSVRGKGRIQVGEIVMTKKGRYAVEL 272
Query: 233 IQYL 236
+YL
Sbjct: 273 TRYL 276
>gi|302767986|ref|XP_002967413.1| hypothetical protein SELMODRAFT_86884 [Selaginella moellendorffii]
gi|300165404|gb|EFJ32012.1| hypothetical protein SELMODRAFT_86884 [Selaginella moellendorffii]
Length = 245
Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/244 (56%), Positives = 182/244 (74%), Gaps = 9/244 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
A RA R+EVLH+DFLTPP L+ES+ + KLADV V GGY QAERCRLS+G + +
Sbjct: 1 QADRAVERQEVLHTDFLTPPALQESLACVRKLADVGVVVSGGYAQAERCRLSLGPADLIR 60
Query: 61 SD-------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII-LQGEKGAQF 112
+ P V+ALS++G F +HGDFLG++LGTGI REK+GDII L +GAQ
Sbjct: 61 ASQCSAGGYPGAVSALSVSGKFVHDAANHGDFLGAVLGTGIVREKVGDIIVLDCSQGAQI 120
Query: 113 LVVPELADYLITSLEKV-GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 171
LVVPEL +YLI SL++ G + + C IPL +E PR K+ K++EASLR+DA+ASAGF
Sbjct: 121 LVVPELVEYLIASLKQASGRIRLQCKEIPLAEIEIHKPRVKALKSVEASLRLDAVASAGF 180
Query: 172 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
KLSRSKL +LIS GDVR+NW TK+ T+L++GD++S++GKGR++IGEI +T+KGKF+VE
Sbjct: 181 KLSRSKLADLISKGDVRLNWKEATKSNTSLKSGDVISLAGKGRLQIGEIETTKKGKFSVE 240
Query: 232 LIQY 235
+I+Y
Sbjct: 241 MIRY 244
>gi|302753752|ref|XP_002960300.1| hypothetical protein SELMODRAFT_73367 [Selaginella moellendorffii]
gi|300171239|gb|EFJ37839.1| hypothetical protein SELMODRAFT_73367 [Selaginella moellendorffii]
Length = 245
Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 136/244 (55%), Positives = 180/244 (73%), Gaps = 9/244 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
A RA R+EVLH+DFLTPP L+ES+ + KLADV V GGY QAERCRLS+G + +
Sbjct: 1 QADRAVERQEVLHTDFLTPPALQESLACVRKLADVGVVVSGGYAQAERCRLSLGPADLIR 60
Query: 61 SD-------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII-LQGEKGAQF 112
+ P V+ALS++G F +HGDFLG++LGTGI REK+GDII L +GAQ
Sbjct: 61 ASQCSAGGYPGAVSALSVSGKFVHDAANHGDFLGAVLGTGIVREKVGDIIVLDCSQGAQI 120
Query: 113 LVVPELADYLITSLEKV-GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGF 171
LV PEL +YLI SL++ G + + C IPL +E PR K+ K++EASLR+DA+ASAGF
Sbjct: 121 LVAPELVEYLIASLKQASGRIRLQCKEIPLAEIEIHKPRVKALKSVEASLRLDAVASAGF 180
Query: 172 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
KLSRSKL +LIS GDVR+NW TK+ T+L++GD++S++GKGR++IGEI +T+KGKF+VE
Sbjct: 181 KLSRSKLADLISKGDVRLNWKEATKSNTSLKSGDVISLAGKGRLQIGEIETTKKGKFSVE 240
Query: 232 LIQY 235
+I Y
Sbjct: 241 MICY 244
>gi|307106329|gb|EFN54575.1| hypothetical protein CHLNCDRAFT_35967 [Chlorella variabilis]
Length = 332
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/242 (50%), Positives = 170/242 (70%), Gaps = 6/242 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA-- 58
+A+RA+ VLHSDF TPPV+ +++M L+++ADV VA GGYPQAERCRL+VG EA
Sbjct: 91 LAQRAADSWAVLHSDFHTPPVVADALMVLQRMADVAGVAWGGYPQAERCRLAVGREEAVE 150
Query: 59 -LTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 114
L DP VAA+ +TGNF F P SH DFLG+ LGTGI R K+GDI+++GE+GAQ LV
Sbjct: 151 GLAGDPSQLGGVAAVEVTGNFMFDPASHRDFLGACLGTGIERGKVGDIVVRGEQGAQILV 210
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 174
P L ++L +L +V V V + L L+ PR + ++E+SLR+DA+ASAGF++S
Sbjct: 211 APNLVEHLEAALTQVRTVPVRAAAVALSELQVRAPRVEELSSVESSLRLDAVASAGFRMS 270
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 234
RSK+ +LI GDVRVNW K ++ GD+VSV+GKGR+++ T+KGK +V++++
Sbjct: 271 RSKMADLIKAGDVRVNWRAAGKASAEVQAGDVVSVAGKGRLEVKAAAMTKKGKHSVQMVR 330
Query: 235 YL 236
YL
Sbjct: 331 YL 332
>gi|159465535|ref|XP_001690978.1| hypothetical protein CHLREDRAFT_128015 [Chlamydomonas reinhardtii]
gi|158279664|gb|EDP05424.1| predicted protein [Chlamydomonas reinhardtii]
Length = 291
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 170/243 (69%), Gaps = 7/243 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--- 57
+A RA+ R +V+ +DFLTPP++ +SM AL+ DV V GGY QAERCRL++G E
Sbjct: 49 IAERATDRWDVVWTDFLTPPIVADSMAALQGRQDVICVPWGGYAQAERCRLALGREELME 108
Query: 58 ALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFL 113
+L SDP D V AL + GNF F P H DFLG+ILGT G+ REK+GDI++QGE GAQ L
Sbjct: 109 SLRSDPQQLDGVVALQVKGNFMFDPAKHPDFLGAILGTAGVVREKVGDILVQGESGAQIL 168
Query: 114 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 173
V P+L ++ TSL +V V V RIPL L PPR + F ++EAS+R+DA+ASAGF++
Sbjct: 169 VDPDLVEHFETSLVQVRTVPVETRRIPLSELSVRPPRQEEFSSVEASMRLDAIASAGFRM 228
Query: 174 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELI 233
SR+K+ ++I GDVR+NW VTK ++ GD++S SGKGR++I T+K K+AV ++
Sbjct: 229 SRTKIGDMIKAGDVRLNWRPVTKPSVEVKEGDVISCSGKGRVEIKACEMTKKEKYAVTMM 288
Query: 234 QYL 236
+Y+
Sbjct: 289 RYV 291
>gi|428220252|ref|YP_007104422.1| photosystem II S4 domain-containing protein [Synechococcus sp. PCC
7502]
gi|427993592|gb|AFY72287.1| photosystem II S4 domain protein [Synechococcus sp. PCC 7502]
Length = 258
Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/229 (53%), Positives = 164/229 (71%), Gaps = 3/229 (1%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV--A 67
EV+ SDFL+P L E+ +K +VK V GGY QAERCR+++ H + L +P++V A
Sbjct: 31 EVVCSDFLSPSELIEAQQVFKKFTEVKFVIYGGYAQAERCRMAIAHID-LPLEPEMVNLA 89
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
A+ I+GNF F P SH DFLG+ILGTGI R+K+GD+IL GEKGAQ +VVPEL +YL SL
Sbjct: 90 AIDISGNFLFDPASHRDFLGAILGTGIERQKVGDLILLGEKGAQVIVVPELVEYLSVSLN 149
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+V V V I L L+ PP+TK T+EASLR+DA+ASAGF +SRSK+V+ I DV
Sbjct: 150 QVRTVPVKVRSIELANLKIRPPQTKEIATVEASLRLDAIASAGFGMSRSKMVDFIDGDDV 209
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
RVNW +VT+ L++GD+V+VSGKGR+ +GEI T+K ++ V L ++L
Sbjct: 210 RVNWKSVTQPSYQLKSGDLVAVSGKGRLAVGEITVTKKNRYRVLLTRFL 258
>gi|302832532|ref|XP_002947830.1| hypothetical protein VOLCADRAFT_57892 [Volvox carteri f.
nagariensis]
gi|300266632|gb|EFJ50818.1| hypothetical protein VOLCADRAFT_57892 [Volvox carteri f.
nagariensis]
Length = 300
Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 118/242 (48%), Positives = 166/242 (68%), Gaps = 6/242 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--- 57
+A RA+ R +V+ +DFL PP++ +SM AL D+ + GGY QAERCR+++G E
Sbjct: 59 IAERAAQRWDVVWTDFLPPPIVADSMAALASRTDIVCLPWGGYAQAERCRIALGREELME 118
Query: 58 ALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 114
L SDP D VAAL + GNF F P H DFLG+ILGTG+ R+K+GDI++QGE GAQ LV
Sbjct: 119 PLQSDPQQLDGVAALQVKGNFMFDPAKHPDFLGAILGTGVVRDKVGDILVQGEAGAQILV 178
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 174
PEL ++ SL +V V V RI L L PPR + ++EASLR+DA+ASAGF++S
Sbjct: 179 DPELVEHFEMSLVQVRTVPVEVRRIALSELSVRPPRQEEVSSVEASLRLDAIASAGFRMS 238
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 234
R+K+ +LI GDVR+NW VTK ++ GD++S +GKGR+++ ++ TRK K+ V L++
Sbjct: 239 RTKMGDLIKAGDVRLNWRPVTKTSVDVKAGDVISCAGKGRLEVRAVDVTRKEKYLVTLLR 298
Query: 235 YL 236
Y+
Sbjct: 299 YV 300
>gi|443328134|ref|ZP_21056736.1| photosystem II S4 domain protein [Xenococcus sp. PCC 7305]
gi|442792216|gb|ELS01701.1| photosystem II S4 domain protein [Xenococcus sp. PCC 7305]
Length = 259
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 165/235 (70%), Gaps = 1/235 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A E++ +DFL+PPVL E KL D++ +A GGYPQAER RL + E
Sbjct: 24 AEQAVRTWEIVLTDFLSPPVLFEVQRIFGKLTDIELLAWGGYPQAERQRLGLARLEMPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ I +AAL I GNF F +H DFLGSILGTGI REK+GDII+ GE+GAQ +VVPE+ +
Sbjct: 84 NSHIELAALDIAGNFLFDTATHRDFLGSILGTGIVREKVGDIIVLGERGAQVIVVPEMVE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L TSL +V +V+V +I L+ PP+ K T+EASLR+DA+ASAGF +SRSK+ N
Sbjct: 144 FLTTSLTQVRSVAVKTRQIDFSELKIRPPKKKEMTTVEASLRLDAIASAGFGMSRSKMAN 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
+I+ GDVR+NW +T+ ++ GD++SV GKGR++IGE++ T+K ++ V L++Y
Sbjct: 204 VITAGDVRINWKDITQASYNVKAGDLISVRGKGRLEIGEVSVTKKQRYRVNLVRY 258
>gi|428205885|ref|YP_007090238.1| photosystem II S4 domain-containing protein [Chroococcidiopsis
thermalis PCC 7203]
gi|428007806|gb|AFY86369.1| photosystem II S4 domain protein [Chroococcidiopsis thermalis PCC
7203]
Length = 259
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 168/237 (70%), Gaps = 1/237 (0%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA-L 59
+A +A EV+ +DFL+PP L ES +L DV+ VA GGYPQAER RL++ E L
Sbjct: 23 LAEQAIKTWEVVLTDFLSPPELAESQQIFSRLTDVQLVAWGGYPQAERQRLAIARAEVPL 82
Query: 60 TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
S VAA+ I GNF F +H DFLG++LGTGI R+K GDII+ GE+GAQ +VVPEL
Sbjct: 83 DSSQVTVAAIDIAGNFLFDTATHRDFLGAMLGTGIVRDKTGDIIVLGERGAQAIVVPELV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
++L +L++V +V V +I L L + P+ K T+EASLR+DA+ASAGF +SRSK+V
Sbjct: 143 EFLAMNLKQVRSVPVKIQQIELSELRIKEPKKKELTTVEASLRLDAIASAGFGMSRSKMV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+LI GDVRVNW ++++ T ++TGD++++ GKGR+++GE+ T+K ++ V+L +Y+
Sbjct: 203 DLIEGGDVRVNWKEMSQSSTQVKTGDLIAIRGKGRLEVGEVAVTKKERYRVQLTRYM 259
>gi|67923764|ref|ZP_00517228.1| RNA-binding S4 [Crocosphaera watsonii WH 8501]
gi|67854391|gb|EAM49686.1| RNA-binding S4 [Crocosphaera watsonii WH 8501]
Length = 275
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 160/227 (70%), Gaps = 1/227 (0%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
EV+ SDF +PPV+ E +L D++ V GGYPQAER R+ + PE P I +AA
Sbjct: 48 EVVVSDFFSPPVIAEVENGFSRLTDIEIVVWGGYPQAERRRIGIARPEIPLEQPQIPLAA 107
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L I GNF F P SH DFLG+IL TGI REKIGDII+ GE+G Q +VVPEL ++L TSL +
Sbjct: 108 LDIAGNFLFDPASHRDFLGAILATGIVREKIGDIIVLGERGGQVIVVPELVEFLETSLTQ 167
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V +V V +I L L+ PP+TK T+EAS+R+DA+ASAGF +SRSK+ + I+ GDVR
Sbjct: 168 VRSVPVKTQQIELSELKIRPPKTKEMTTVEASMRLDAIASAGFGMSRSKMSDAINRGDVR 227
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
VNW +++ +++GD+++V GKGR+++GE+ T+K ++ ++L ++
Sbjct: 228 VNWKETSQSSYNVKSGDLITVRGKGRLEVGEVAITKKQRYRIQLTRF 274
>gi|416399374|ref|ZP_11686955.1| RNA-binding S4 [Crocosphaera watsonii WH 0003]
gi|357262400|gb|EHJ11533.1| RNA-binding S4 [Crocosphaera watsonii WH 0003]
Length = 259
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 160/227 (70%), Gaps = 1/227 (0%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
EV+ SDF +PPV+ E +L D++ V GGYPQAER R+ + PE P I +AA
Sbjct: 32 EVVVSDFFSPPVIAEVENGFSRLTDIEIVVWGGYPQAERRRIGIARPEIPLEQPQIPLAA 91
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L I GNF F P SH DFLG+IL TGI REKIGDII+ GE+G Q +VVPEL ++L TSL +
Sbjct: 92 LDIAGNFLFDPASHRDFLGAILATGIVREKIGDIIVLGERGGQVIVVPELVEFLETSLTQ 151
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V +V V +I L L+ PP+TK T+EAS+R+DA+ASAGF +SRSK+ + I+ GDVR
Sbjct: 152 VRSVPVKTQQIELSELKIRPPKTKEMTTVEASMRLDAIASAGFGMSRSKMSDAINRGDVR 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
VNW +++ +++GD+++V GKGR+++GE+ T+K ++ ++L ++
Sbjct: 212 VNWKETSQSSYNVKSGDLITVRGKGRLEVGEVAITKKQRYRIQLTRF 258
>gi|334119785|ref|ZP_08493869.1| photosystem II S4 domain protein [Microcoleus vaginatus FGP-2]
gi|333457426|gb|EGK86049.1| photosystem II S4 domain protein [Microcoleus vaginatus FGP-2]
Length = 261
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 166/236 (70%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV +DFL+PP L +++ ++L DV+ VA GGYPQAER R+++ +
Sbjct: 26 AEQAIKTWEVTQTDFLSPPELADTLTVFKRLTDVELVAWGGYPQAERQRIAIARSDIPID 85
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ VAA+ I GNF F SH DFLG++LGTGI REK GD+I+ GE+GAQ +V+PE+ +
Sbjct: 86 SASVNVAAVEIAGNFLFDTASHRDFLGAMLGTGIVREKTGDVIVLGERGAQAIVMPEMVE 145
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YL SL++V +V V RI L L+ P+ K T+EAS+R+DA+ASAGF +SRSK+ +
Sbjct: 146 YLEMSLQQVRSVPVQTRRIELSELKIREPKKKEMTTVEASMRLDAVASAGFAMSRSKMAD 205
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI +GDVRVNW VT+ +++GD+++V+GKGR++IGE+ T+K ++ V+L +YL
Sbjct: 206 LIDSGDVRVNWKDVTQASYNVKSGDLIAVTGKGRLEIGEVAVTKKERYRVQLTRYL 261
>gi|428219626|ref|YP_007104091.1| photosystem II S4 domain-containing protein [Pseudanabaena sp. PCC
7367]
gi|427991408|gb|AFY71663.1| photosystem II S4 domain protein [Pseudanabaena sp. PCC 7367]
Length = 258
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/234 (49%), Positives = 168/234 (71%), Gaps = 1/234 (0%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 63
RA + EV+ SDFL+PP L E+ L+KL ++ AV+ GGYPQAERCRL++ + +
Sbjct: 25 RALNTWEVVCSDFLSPPELAEAHEVLKKLTEIHAVSWGGYPQAERCRLALARVDLPLAPE 84
Query: 64 DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 122
++ +AA+ + GNF F +H DFLG+ LG+GI R+K+GDII+ GE+GAQ +VVPEL +YL
Sbjct: 85 NVELAAIDVAGNFLFDAATHRDFLGACLGSGIERQKVGDIIVIGERGAQIIVVPELVEYL 144
Query: 123 ITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 182
+L +V V+V I L L+ PPRTK T+EASLR+DA+ASAGF +SRSK+V+LI
Sbjct: 145 TMNLTQVRTVTVKTQPIELSELKIRPPRTKEMTTVEASLRLDAIASAGFGMSRSKMVDLI 204
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+ +VRVNW +V ++ L+ GD+V+V G+GR+ IG+I T+K ++ V+L +YL
Sbjct: 205 AGDEVRVNWKSVKQSSHQLQAGDLVAVRGRGRLSIGDIMITKKNRYRVQLTRYL 258
>gi|428319799|ref|YP_007117681.1| photosystem II S4 domain protein [Oscillatoria nigro-viridis PCC
7112]
gi|428243479|gb|AFZ09265.1| photosystem II S4 domain protein [Oscillatoria nigro-viridis PCC
7112]
Length = 259
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 166/236 (70%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV +DFL+PP L +++ ++L DV+ VA GGYPQAER R+++ +
Sbjct: 24 AEQAIKTWEVTQTDFLSPPELADTLTVFKRLTDVELVAWGGYPQAERQRIAIARSDIPID 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ +AA+ I GNF F SH DFLG++LGTGI REK GD+I+ GE+GAQ +V+PE+ +
Sbjct: 84 SASVSIAAVEIAGNFLFDTASHRDFLGAMLGTGIVREKTGDVIVLGERGAQAIVMPEMVE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YL SL++V +V V RI L L+ P+ K T+EAS+R+DA+ASAGF +SRSK+ +
Sbjct: 144 YLEMSLQQVRSVPVKTQRIELSELKIREPKKKEMTTVEASMRLDAVASAGFAMSRSKMAD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI +GDVRVNW VT+ +++GD+++V+GKGR++IGE+ T+K ++ V+L +YL
Sbjct: 204 LIGSGDVRVNWKDVTQASYNVKSGDLIAVTGKGRLEIGEVAVTKKERYRVQLTRYL 259
>gi|434397141|ref|YP_007131145.1| photosystem II S4 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428268238|gb|AFZ34179.1| photosystem II S4 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 259
Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 165/235 (70%), Gaps = 1/235 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DFL+P VL E+ KL +V+ VA GGYPQAER RL + +
Sbjct: 24 AEQAIKTWEVVLTDFLSPRVLIETQAIFSKLTEVEIVAWGGYPQAERQRLGIARQDIPID 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
I + AL I GNF F P +H DFLG+ILGTGI R+K+GDI++ GE+GAQ +VVPE+ +
Sbjct: 84 QSQIDLVALDIAGNFLFDPATHRDFLGAILGTGIVRDKVGDILVLGERGAQVIVVPEMVE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L TSL +V +V V RI L L+ PP+ K T+EAS+R+DA+ASAGF +SRSK+ +
Sbjct: 144 FLETSLTQVRSVPVKTQRIDLSELKVRPPQKKEMTTVEASMRLDAIASAGFGMSRSKMAD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
IS+GDVRVNW +T+ +++ GD++SVSGKGR+++GE+ T+K ++ + L+++
Sbjct: 204 AISSGDVRVNWKEITQPSYSVKAGDLISVSGKGRLEVGEVAVTKKQRYRINLVRF 258
>gi|56752497|ref|YP_173198.1| hypothetical protein syc2488_d [Synechococcus elongatus PCC 6301]
gi|56687456|dbj|BAD80678.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 259
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/224 (51%), Positives = 158/224 (70%), Gaps = 1/224 (0%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAALSIT 72
SDFL+PP L E+ L +L +++ + GGYPQAER RL++ E L D +AA+ I
Sbjct: 36 SDFLSPPELAEAQERLGRLTELQLLPWGGYPQAERQRLAIARSEMPLDVDQIAIAAVEIA 95
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
GNF F P SH DFLGS+LGTG+ REK+GDI++ G++GAQ LV+PEL ++L L +V +V
Sbjct: 96 GNFLFDPASHRDFLGSLLGTGLVREKVGDILVLGDRGAQALVMPELVEFLGLQLTQVRSV 155
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
V IPL L PR K T+EASLR+DA+ASAGF LSRSK+V+LIS G+VRVNW
Sbjct: 156 PVKVREIPLAELRIPAPRIKQLTTVEASLRLDAIASAGFGLSRSKMVDLISRGEVRVNWK 215
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
T+ T L+TGD+V+V GKGR+ IG++ T+K ++ +EL +Y+
Sbjct: 216 AATQPSTQLKTGDLVAVRGKGRLAIGDVQVTKKERYRLELTRYV 259
>gi|428300093|ref|YP_007138399.1| photosystem II S4 domain-containing protein [Calothrix sp. PCC
6303]
gi|428236637|gb|AFZ02427.1| photosystem II S4 domain protein [Calothrix sp. PCC 6303]
Length = 259
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 162/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A E++ +DFL+PP L E+ A +L +V VA GGYPQAER R+++ +
Sbjct: 24 AEQAIKTWEIVFTDFLSPPELAEAQRAFNRLTEVHLVAWGGYPQAERQRIAIARSDLPLE 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ +A L + GNF F +H DFLGS+LGTGI REK GDII+ GE+GAQ +VVPEL +
Sbjct: 84 QAQVEIAVLDVAGNFLFDTATHRDFLGSMLGTGIVREKTGDIIVLGERGAQVIVVPELVE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L SL++V +V V RI + L+ P+ K T+EASLR+DA+ASAGF +SRSK+V+
Sbjct: 144 FLEMSLQQVRSVPVKTRRIDISELKIREPKKKEMTTVEASLRLDAIASAGFGMSRSKMVD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI GDVRVNW ++ L+TGD+V+V GKGR+++GEI T+K ++ V+L +Y+
Sbjct: 204 LIDGGDVRVNWKDTSQASFQLKTGDLVAVRGKGRLEVGEIAVTKKDRYRVQLTRYM 259
>gi|440682854|ref|YP_007157649.1| photosystem II S4 domain protein [Anabaena cylindrica PCC 7122]
gi|428679973|gb|AFZ58739.1| photosystem II S4 domain protein [Anabaena cylindrica PCC 7122]
Length = 259
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 163/236 (69%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALT 60
A +A EV+++DFL+PP L E +L +V VA GGYPQAER R+++ E L
Sbjct: 24 AEQAIKTWEVVYTDFLSPPELAEIQRVFSRLTEVHLVAWGGYPQAERQRIAIARSELPLD 83
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+AAL I GNF F +H DFLG++LGTGI REK GDII+ GE+GAQ +VVPEL +
Sbjct: 84 QSQVAIAALEIAGNFLFDTANHRDFLGAMLGTGIVREKTGDIIVLGERGAQVIVVPELTE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L SL++V +V V RI + L+ P+ K T+EASLR+DA+ASAGF +SRSK+V+
Sbjct: 144 FLEMSLQQVRSVPVKTQRIDINELKIREPKKKELTTVEASLRLDAIASAGFGMSRSKMVD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI + DVRVNW VT+ L++GD++++ GKGR+++GEI T+K ++ ++L +Y+
Sbjct: 204 LIDSNDVRVNWKEVTQASFQLKSGDLIAIRGKGRLEVGEIAVTKKDRYRMQLTRYM 259
>gi|172036251|ref|YP_001802752.1| putative RNA-binding S4 protein [Cyanothece sp. ATCC 51142]
gi|354553046|ref|ZP_08972353.1| photosystem II S4 domain protein [Cyanothece sp. ATCC 51472]
gi|171697705|gb|ACB50686.1| putative RNA-binding S4 protein [Cyanothece sp. ATCC 51142]
gi|353554876|gb|EHC24265.1| photosystem II S4 domain protein [Cyanothece sp. ATCC 51472]
Length = 259
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 157/224 (70%), Gaps = 1/224 (0%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
EV+ SDF +PPV E A +L +++ + GGYPQAER R+ + PE I +AA
Sbjct: 32 EVVVSDFFSPPVTAEVEKAFNQLTEIEIMVWGGYPQAERRRIGITRPEIPLEQSQIPLAA 91
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L I GNF F P SH DFLG+IL TGI R+KIGDII+ GE+G Q +VVPEL ++L TSL +
Sbjct: 92 LDIAGNFLFDPASHRDFLGAILATGIVRDKIGDIIVLGERGGQVIVVPELVEFLETSLTQ 151
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V +V V RI L L+ PP+TK T+EAS+R+DA+ASAGF +SRSK+V+ I+ GDVR
Sbjct: 152 VRSVPVKTQRIELSELKIRPPKTKEMTTVEASMRLDAIASAGFGMSRSKMVDAINKGDVR 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
VNW +T+ + +GD+++V GKGR++IGE+ T+K ++ ++L
Sbjct: 212 VNWKEITQASHNVESGDLIAVRGKGRLEIGEVAITKKQRYRIQL 255
>gi|434391054|ref|YP_007126001.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 7428]
gi|428262895|gb|AFZ28841.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 7428]
Length = 259
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 164/236 (69%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALT 60
A++A EV+ +DFL+PP L E+ +L +V+ +A GGYPQAER RL++ PE L
Sbjct: 24 AQQAIKTWEVVLTDFLSPPELAETQQVFSRLTEVQTIAWGGYPQAERQRLAIARPEIPLD 83
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
VAAL I+GNF F +H DFLG++LGTGI REK GDII+ GE+GAQ +VVPEL +
Sbjct: 84 LSHVAVAALDISGNFLFDTATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELVE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L++V +V V RI L L+ P+ K T+EASLR+DA+ASAGF SRSK+ +
Sbjct: 144 FLEMNLQQVRSVPVKIQRIELSELKIREPKKKDLTTVEASLRLDAIASAGFGTSRSKMAD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+I GDVRVNW VT+ ++ GD++++ GKGR+++GE+ T+K ++ V+L +Y+
Sbjct: 204 MIDAGDVRVNWKEVTQASAQVKPGDLIAIRGKGRLEVGEVAVTKKERYRVQLTRYV 259
>gi|300866534|ref|ZP_07111224.1| RNA-binding S4 [Oscillatoria sp. PCC 6506]
gi|300335491|emb|CBN56384.1| RNA-binding S4 [Oscillatoria sp. PCC 6506]
Length = 259
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 164/236 (69%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A E+ +DFL+PP L E+ +L +V+ +A GGYPQAER RL++ E
Sbjct: 24 AEQALKTWEISLTDFLSPPELAETQKVFSRLTEVQLIAWGGYPQAERQRLAIARSELPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ + VAAL I GNF F SH DFLGSILG+GI REK GDII+ GE+G+Q +VVPEL +
Sbjct: 84 NSSVSVAALEIAGNFLFDTASHRDFLGSILGSGIVREKTGDIIVLGERGSQAIVVPELVE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YL L++V +V V RI L L+ + P+ K T+EAS+R+DA+ASAGF +SRSK+V+
Sbjct: 144 YLEMHLKQVRSVPVQIQRIELSELKIKEPKKKELTTVEASMRLDAIASAGFGMSRSKMVD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI GDVRVNW + ++ +++GD+V++ GKGR++IGE+ T+K ++ ++L +Y+
Sbjct: 204 LIEGGDVRVNWKDIAQSSHIIKSGDLVAIRGKGRLEIGEVMVTKKDRYRIQLTRYI 259
>gi|81300312|ref|YP_400520.1| RNA-binding S4 [Synechococcus elongatus PCC 7942]
gi|81169193|gb|ABB57533.1| RNA-binding S4 [Synechococcus elongatus PCC 7942]
Length = 259
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/224 (51%), Positives = 158/224 (70%), Gaps = 1/224 (0%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA-LTSDPDIVAALSIT 72
SDFL+PP L E+ L +L +++ + GGYPQAER RL++ E L D +AA+ I
Sbjct: 36 SDFLSPPELAEAQERLGRLTELQLLPWGGYPQAERQRLAIARSEMPLDVDQIAIAAVEIA 95
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
GNF F P SH DFLGS+LGTG+ REK+GDI++ G++GAQ LV+PEL ++L L +V +V
Sbjct: 96 GNFLFDPASHRDFLGSLLGTGLVREKVGDILVLGDRGAQALVMPELVEFLGLQLTQVRSV 155
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
V IPL L PR K T+EASLR+DA+ASAGF LSRSK+V+LI+ G+VRVNW
Sbjct: 156 PVKVREIPLAELRIPAPRIKQLTTVEASLRLDAIASAGFGLSRSKMVDLINRGEVRVNWK 215
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
T+ T L+TGD+V+V GKGR+ IG++ T+K ++ +EL +Y+
Sbjct: 216 AATQPSTQLKTGDLVAVRGKGRLAIGDVQVTKKERYRLELTRYV 259
>gi|414078898|ref|YP_006998216.1| photosystem II S4 domain-containing protein [Anabaena sp. 90]
gi|413972314|gb|AFW96403.1| photosystem II S4 domain protein [Anabaena sp. 90]
Length = 259
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 161/228 (70%), Gaps = 1/228 (0%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
EV+ +DFL+PP L E +L +V +VA GGYPQAER RL++ + ++ + A
Sbjct: 32 EVVFTDFLSPPELAEIQRVFSRLTEVHSVAWGGYPQAERQRLAIARADLPLDQSEVAIVA 91
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L I GNF F +H DFLG++LGTGI REK GD+I+ GE+GAQ +VVPEL ++L SL++
Sbjct: 92 LDIAGNFLFDTANHRDFLGAMLGTGIVREKTGDVIVLGERGAQVIVVPELVEFLEMSLQQ 151
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V +V V RI + L+ P+ K T+EASLR+DA+ASAGF +SRSK+V+LI + DVR
Sbjct: 152 VRSVPVKTRRIEINELKIREPKKKEMTTVEASLRLDAVASAGFGMSRSKMVDLIDSNDVR 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
VNW VT+ + ++TGD++++ GKGR+++GEI T+K ++ V+L +Y+
Sbjct: 212 VNWKEVTQASSHVKTGDLIAIRGKGRLEVGEIAVTKKDRYRVQLTRYM 259
>gi|298493122|ref|YP_003723299.1| photosystem II S4 domain-containing protein ['Nostoc azollae' 0708]
gi|298235040|gb|ADI66176.1| photosystem II S4 domain protein ['Nostoc azollae' 0708]
Length = 259
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 162/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALT 60
A +A EV+ +DFL+PP L E +L DV VA GGYPQAER R+++ E L
Sbjct: 24 AEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTDVHLVAWGGYPQAERQRVTIARSELPLD 83
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ AL I GNF F +H DFLG+ILGTGI REK GDI++ GE+GAQ +VVPEL +
Sbjct: 84 QSQVAITALEIVGNFLFDTATHRDFLGAILGTGIVREKTGDIMVLGERGAQVIVVPELTE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L SL++V +V V I + L+ P+ K T+EASLR+DA+ASAGF +SRSK+V+
Sbjct: 144 FLEMSLKQVRSVPVKTQPIDINELKIREPKKKELTTVEASLRLDAIASAGFGMSRSKMVD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI +GDVRVNW +T+ + L+TGD++++ GKGR+++GEI T+K ++ ++L +Y+
Sbjct: 204 LIDSGDVRVNWKEITQASSQLKTGDLIAIPGKGRLEVGEITVTKKDRYRMQLTRYM 259
>gi|126654802|ref|ZP_01726336.1| RNA-binding S4 [Cyanothece sp. CCY0110]
gi|126623537|gb|EAZ94241.1| RNA-binding S4 [Cyanothece sp. CCY0110]
Length = 259
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 111/227 (48%), Positives = 158/227 (69%), Gaps = 1/227 (0%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
EV+ SDF +PPV+ E A +L +V+ + GGYPQAER R+ + PE I +AA
Sbjct: 32 EVVVSDFFSPPVVAEVENAFSQLTEVEIMVWGGYPQAERRRIGITRPEIPLEQSQIPLAA 91
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L I GNF F P SH DFLG+IL TGI R+KIGDII+ GE+G Q ++VPEL ++L TSL +
Sbjct: 92 LDIAGNFLFDPASHRDFLGAILATGIVRDKIGDIIVLGERGGQVIIVPELVEFLETSLTQ 151
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V +V V I L L+ PP+TK T+EAS+R+DA+ASAGF +SRSK+V+ I+ GDVR
Sbjct: 152 VRSVPVKTQSIELSELKIRPPKTKEMTTVEASMRLDAIASAGFGMSRSKMVDAINKGDVR 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
VNW +T+ + +GD+++V GKGR+++GE+ T+K ++ + L ++
Sbjct: 212 VNWKEITQASHNIESGDLIAVRGKGRLEVGEVGITKKQRYRIHLTRF 258
>gi|427730945|ref|YP_007077182.1| photosystem II S4 domain-containing protein [Nostoc sp. PCC 7524]
gi|427366864|gb|AFY49585.1| photosystem II S4 domain protein [Nostoc sp. PCC 7524]
Length = 259
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 164/236 (69%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DFL+PP L E +L +++ VA GGYPQAER R+++ E
Sbjct: 24 AEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTELQLVAWGGYPQAERQRVAIARSELPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ + L I GNF F P +H DFLG++LGTGI REK GDII+ GE+GAQ +VVPELA+
Sbjct: 84 QSQVNLVLLEIAGNFLFDPATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L++V +V V +I L L+ P+ K T+EASLR+DA+ASAGF +SRSK+V+
Sbjct: 144 FLTMNLQQVRSVPVKTQQIDLSELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI GDVRVNW VT+ + +++GD++++ GKGR+++GE+ T+K ++ V+L +Y+
Sbjct: 204 LIDAGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEVAVTKKERYRVQLTRYM 259
>gi|443646827|ref|ZP_21129505.1| photosystem II S4 domain protein [Microcystis aeruginosa
DIANCHI905]
gi|159028854|emb|CAO90659.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335656|gb|ELS50120.1| photosystem II S4 domain protein [Microcystis aeruginosa
DIANCHI905]
Length = 259
Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 115/236 (48%), Positives = 163/236 (69%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV +DFL+P VL E ++L DV GGYPQAER RL + + +
Sbjct: 24 AEQAIKTWEVTTTDFLSPAVLAEVERFFQRLTDVSMEKWGGYPQAERQRLGIARVDLPLT 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
DI ++AL I GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPELAD
Sbjct: 84 VTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPELAD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L +V +V V + IPL AL+ PP+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 144 FLSANLRQVRSVPVKTSLIPLTALKVRPPQKKEINTVEASLRLDAIASAGFGISRSKMAE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS+GDVRVNW ++++ ++TGD++S GKGR+++GE+ T+K ++ V L +++
Sbjct: 204 AISSGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTRFI 259
>gi|434387463|ref|YP_007098074.1| photosystem II S4 domain protein [Chamaesiphon minutus PCC 6605]
gi|428018453|gb|AFY94547.1| photosystem II S4 domain protein [Chamaesiphon minutus PCC 6605]
Length = 259
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 165/238 (69%), Gaps = 3/238 (1%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A RA EV+ +DFL+PP + E +L+DV+ +A GGYPQAER RL + E L
Sbjct: 23 LADRAIKNWEVVETDFLSPPEIAEIKSVFSRLSDVEIIATGGYPQAERQRLGICRAE-LP 81
Query: 61 SDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
+P V AA+ I GNF F P +H DFLG++LG GI R+K GDII+ GE+GAQ +V PEL
Sbjct: 82 FEPSQVPLAAIQIAGNFLFDPPTHRDFLGAMLGCGIVRDKTGDIIVLGEQGAQAIVAPEL 141
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
++L T+L +V +V V RI L L+ P+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 142 VEFLETNLTQVRSVPVKTQRIDLSELKIREPKKKEMTTVEASLRLDAIASAGFGMSRSKM 201
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
V+LIS+GDVRVNW + ++ L+ GD+V++ GKGR++IGE+ T+K ++ V L +Y+
Sbjct: 202 VDLISSGDVRVNWKEIGQSAHALKAGDLVAIRGKGRLEIGEVAITKKERYRVNLTRYM 259
>gi|428224087|ref|YP_007108184.1| photosystem II S4 domain-containing protein [Geitlerinema sp. PCC
7407]
gi|427983988|gb|AFY65132.1| photosystem II S4 domain protein [Geitlerinema sp. PCC 7407]
Length = 259
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 162/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALT 60
A RA EV+ +DFL+PP + ++ +L +V+ + GGYPQAER RL++ PE L
Sbjct: 24 AERAIKTWEVVLTDFLSPPEMADAQQMFGRLTEVQLMGWGGYPQAERQRLAIARPEIPLE 83
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ VA L I GNF F P +H DFLG++LGTGI R+K+GDI++ G++GAQ LVVPE+ D
Sbjct: 84 ASQVEVAVLEIAGNFLFDPATHRDFLGAVLGTGIVRDKVGDIVVLGDRGAQALVVPEMVD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L SL +V +V V I L L+ P+ K T+EAS+R+DA+ASAGF +SRSK+ +
Sbjct: 144 FLAMSLTQVRSVPVKTQPIDLAELKVREPKKKEMTTVEASMRLDAIASAGFGMSRSKMAD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI+ GDVRVNW VT+ ++ GD+V+V GKGR++IGE+ T+K ++ ++L + +
Sbjct: 204 LITGGDVRVNWRDVTQASYQVKAGDLVAVRGKGRLEIGEVAVTKKDRYRIQLTRLM 259
>gi|427736647|ref|YP_007056191.1| photosystem II S4 domain-containing protein [Rivularia sp. PCC
7116]
gi|427371688|gb|AFY55644.1| photosystem II S4 domain protein [Rivularia sp. PCC 7116]
Length = 259
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 164/236 (69%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DFL+PP L E+ KL +V+ +A GGYPQAER R+++ E
Sbjct: 24 AEQAIRTWEVVFTDFLSPPELAEAQQGFSKLTEVELLAWGGYPQAERKRIAIARNELPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ + + AL+I GNF F +H DFLG++LGTGI REK GDII+ GE+GAQ +VVPELAD
Sbjct: 84 ESQVELVALNIAGNFLFDTATHRDFLGAMLGTGIVREKTGDIIVLGERGAQVIVVPELAD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L TSL +V +V V RI L+ P+ K T+EASLR+DA+ASAGF +SRSK+V+
Sbjct: 144 FLETSLTQVRSVPVKTQRIDFGELKIREPKKKELTTVEASLRLDAIASAGFGMSRSKMVD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
I+ GDVRVNW + + ++TGD++++ GKGR+++GEI T+K ++ ++L +++
Sbjct: 204 FINAGDVRVNWKEIKQASHQVKTGDLIAIRGKGRLEVGEIAVTKKERYRMQLTKFV 259
>gi|354567372|ref|ZP_08986541.1| photosystem II S4 domain protein [Fischerella sp. JSC-11]
gi|353542644|gb|EHC12105.1| photosystem II S4 domain protein [Fischerella sp. JSC-11]
Length = 259
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 163/236 (69%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALT 60
A +A EV+ +DFL+PP L E +L +V+ +A GGYPQAER R+++ E L
Sbjct: 24 AEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLLAWGGYPQAERQRMAIARSELPLD 83
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+AAL I GNF F +H DFLG++LGTGI REK GDII+ GE+GAQ +VVPEL +
Sbjct: 84 LSQVAIAALDIAGNFLFDTATHRDFLGAMLGTGIIREKTGDIIVLGEQGAQAIVVPELVE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L++V +V V RI L L+ P+ K T+EASLR+DA+ASAGF +SRSK+V
Sbjct: 144 FLEMNLKQVRSVPVKTQRIDLSELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI GDVRVNW +T+ + ++TGD++++ GKGR+++G+I T+K ++ V+L +Y+
Sbjct: 204 LIDGGDVRVNWKEITQANSQVKTGDLIAIRGKGRLEVGDIAVTKKDRYRVQLTRYM 259
>gi|425469652|ref|ZP_18848571.1| RNA-binding S4 [Microcystis aeruginosa PCC 9701]
gi|389880482|emb|CCI38776.1| RNA-binding S4 [Microcystis aeruginosa PCC 9701]
Length = 259
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 162/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV +DFL+P VL E ++L DV GGYPQAER RL + + +
Sbjct: 24 AEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQKWGGYPQAERQRLGIARVDLPLA 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ DI ++AL I GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPELAD
Sbjct: 84 ETDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPELAD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L +V +V V + IPL L+ PP+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 144 FLCANLLQVRSVPVKTSPIPLTELKVRPPQKKEINTVEASLRLDAIASAGFGISRSKMAE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS GDVRVNW ++++ ++TGD++S GKGR+++GE+ T+K ++ V L +++
Sbjct: 204 AISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTRFI 259
>gi|254423526|ref|ZP_05037244.1| photosystem II S4 domain protein [Synechococcus sp. PCC 7335]
gi|196191015|gb|EDX85979.1| photosystem II S4 domain protein [Synechococcus sp. PCC 7335]
Length = 259
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 163/236 (69%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALT 60
A +A E + +DFL+PP + E+ +L+DV A+A GGYPQAER RL + E L
Sbjct: 24 AEQAIRTWEPVATDFLSPPEVFEAQATFGRLSDVHAIANGGYPQAERQRLIIARAEIPLD 83
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
P +AA+SI GNF F +H DFLGS+LGTGI R K+GDII+ GE+GAQ +VVPEL +
Sbjct: 84 ETPVPLAAISIAGNFLFDTATHRDFLGSLLGTGIVRAKVGDIIVLGERGAQAVVVPELVE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L TSL +V +VSV I + L P+ K T+EAS+R+DALASAGF +SRSK+ +
Sbjct: 144 FLTTSLTQVRSVSVKTRPIEMSELRVREPKKKEMTTVEASMRLDALASAGFGMSRSKMAD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+I+ GDVRVNW VT+ TL+ GD+V++ GKGR+++GE+ T+K ++ V+L + +
Sbjct: 204 MITGGDVRVNWKPVTQASQTLQPGDLVAIRGKGRLEVGEMAVTKKQRYRVQLTRLV 259
>gi|428203950|ref|YP_007082539.1| photosystem II S4 domain-containing protein [Pleurocapsa sp. PCC
7327]
gi|427981382|gb|AFY78982.1| photosystem II S4 domain protein [Pleurocapsa sp. PCC 7327]
Length = 259
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 165/236 (69%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV +DFL+PPVL E+ +L +++ +A GGYPQAER R+ + +
Sbjct: 24 AEQALRTWEVALTDFLSPPVLAEAQQIFGRLTEIEYIAWGGYPQAERQRIGMARSDIPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
I + AL I GNF F P +H DFLG+ILGTGI R+K+GDII+ GE+GAQ LVVPE+A+
Sbjct: 84 LSQIQITALDIAGNFLFDPANHRDFLGAILGTGIVRDKVGDIIVLGERGAQVLVVPEIAE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L TSL +V +V V RI L L+ PP+ K T+EAS+R+DA+ASAGF +SRSK+ +
Sbjct: 144 FLETSLVQVRSVPVKTQRIDLSELKVCPPQKKEITTVEASMRLDAIASAGFGMSRSKMAD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
I+ G+VRVNW VT+ T++ GD++SV GKGR+++ E++ T+K ++ V+L +++
Sbjct: 204 AIAAGEVRVNWKEVTQASYTVKMGDLISVRGKGRLQVNEVDLTKKQRYRVQLTRFI 259
>gi|425448148|ref|ZP_18828127.1| RNA-binding S4 [Microcystis aeruginosa PCC 9443]
gi|389731129|emb|CCI04764.1| RNA-binding S4 [Microcystis aeruginosa PCC 9443]
Length = 259
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 162/238 (68%), Gaps = 5/238 (2%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH---PEA 58
A +A EV +DFL+P VL E ++L DV GGYPQAER RL + P A
Sbjct: 24 AEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMEKWGGYPQAERQRLGIARVDLPLA 83
Query: 59 LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
+T P ++AL I GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPEL
Sbjct: 84 VTDIP--LSALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPEL 141
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
AD+L +L +V +V V + IPL L+ PP+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 142 ADFLSANLRQVRSVPVKTSLIPLTELKVRPPQKKEINTVEASLRLDAIASAGFGISRSKM 201
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS GDVRVNW ++++ ++TGD++S GKGR+++GE+ T+K ++ V L +++
Sbjct: 202 AEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTRFI 259
>gi|423067872|ref|ZP_17056662.1| photosystem II S4 domain protein [Arthrospira platensis C1]
gi|406710615|gb|EKD05822.1| photosystem II S4 domain protein [Arthrospira platensis C1]
Length = 287
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 164/236 (69%), Gaps = 1/236 (0%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-AL 59
+A +A E+ ++FL+PP + E+ +L +++A++ GGYPQAER R+++ E L
Sbjct: 51 LAEQALKTWEITQTEFLSPPEIAEAQGIFRRLTEIQALSWGGYPQAERQRMAIARSEIPL 110
Query: 60 TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
S +AA+ I+GNF F +H DFLGS+LGTGI REK GD+I+ GE+GAQ +V+PEL
Sbjct: 111 DSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKTGDLIVLGERGAQAIVIPELV 170
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+YL +L +V V V I L L+ P+ K+ T+EASLR+DA+ASAGF +SRSK+V
Sbjct: 171 EYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEASLRLDAIASAGFGMSRSKMV 230
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
NLI GDVRVNW V + ++TGD++++ GKGR++IGE++ T+K ++ VEL +Y
Sbjct: 231 NLIDGGDVRVNWKEVKQASIAIKTGDLIAIRGKGRLEIGEVSVTKKQRYRVELTRY 286
>gi|425460161|ref|ZP_18839643.1| RNA-binding S4 [Microcystis aeruginosa PCC 9808]
gi|389827156|emb|CCI21733.1| RNA-binding S4 [Microcystis aeruginosa PCC 9808]
Length = 259
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 162/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV +DFL+P VL E ++L DV GGYPQAER RL + + +
Sbjct: 24 AEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQKWGGYPQAERQRLGIARVDLPLT 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
DI ++AL I GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPELAD
Sbjct: 84 VTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPELAD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L +V +V V + IPL L+ PP+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 144 FLSANLRQVRSVPVKTSPIPLTELKVRPPQKKEINTVEASLRLDAIASAGFGISRSKMAE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS+GDVRVNW ++++ ++TGD++S GKGR+++GE+ T+K ++ V L +++
Sbjct: 204 AISSGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTRFI 259
>gi|119513374|ref|ZP_01632408.1| hypothetical protein N9414_12918 [Nodularia spumigena CCY9414]
gi|119461983|gb|EAW42986.1| hypothetical protein N9414_12918 [Nodularia spumigena CCY9414]
Length = 259
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 163/237 (68%), Gaps = 3/237 (1%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DFL+PP L E +L DV+ VA GGYPQAER R+++ E L
Sbjct: 24 AEQAIKTWEVVLTDFLSPPELAEINRVFSRLTDVQLVAWGGYPQAERQRMAIARSE-LPL 82
Query: 62 DPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+P V AL GNF F SH DFLG++LGTGI REK GDI++ GE+GAQ +V PELA
Sbjct: 83 EPSQVDLVALEFAGNFLFDTASHRDFLGAMLGTGIVREKTGDILVLGERGAQAIVAPELA 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
++L SL++V +V V RI + L+ P+ K T+EASLR+DA+ASAGF +SRSK+V
Sbjct: 143 EFLEMSLQQVRSVPVKTQRIDINELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
N I +GDVRVNW VT+ + +++GD++++ KGR+++GEI T+K ++ V+L +Y+
Sbjct: 203 NYIESGDVRVNWKDVTQASSQVKSGDLIAIRSKGRLEVGEIAVTKKERYRVQLTRYM 259
>gi|209525233|ref|ZP_03273776.1| photosystem II S4 domain protein [Arthrospira maxima CS-328]
gi|209494418|gb|EDZ94730.1| photosystem II S4 domain protein [Arthrospira maxima CS-328]
Length = 259
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 164/236 (69%), Gaps = 1/236 (0%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-AL 59
+A +A E+ ++FL+PP + E+ +L +++A++ GGYPQAER R+++ E L
Sbjct: 23 LAEQALKTWEITQTEFLSPPEIAEAQGIFRRLTEIQALSWGGYPQAERQRMAIARSEIPL 82
Query: 60 TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
S +AA+ I+GNF F +H DFLGS+LGTGI REK GD+I+ GE+GAQ +V+PEL
Sbjct: 83 DSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKTGDLIVLGERGAQAIVIPELV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+YL +L +V V V I L L+ P+ K+ T+EASLR+DA+ASAGF +SRSK+V
Sbjct: 143 EYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEASLRLDAIASAGFGMSRSKMV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
NLI GDVRVNW V + ++TGD++++ GKGR++IGE++ T+K ++ VEL +Y
Sbjct: 203 NLIDGGDVRVNWKEVKQASIAIKTGDLIAIRGKGRLEIGEVSVTKKQRYRVELTRY 258
>gi|422301480|ref|ZP_16388848.1| RNA-binding S4 [Microcystis aeruginosa PCC 9806]
gi|389789624|emb|CCI14403.1| RNA-binding S4 [Microcystis aeruginosa PCC 9806]
Length = 259
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 162/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV +DFL+P VL E ++L DV GGYPQAER RL + + +
Sbjct: 24 AEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQKWGGYPQAERQRLGISRVDLPLA 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ DI ++AL I GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPELAD
Sbjct: 84 ETDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPELAD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L +V +V V + IPL L+ PP+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 144 FLCANLLQVRSVPVKTSPIPLTELKVRPPQKKEINTVEASLRLDAIASAGFGISRSKMAE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS GDVRVNW ++++ ++TGD++S GKGR+++GE+ T+K ++ V L +++
Sbjct: 204 AISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTRFI 259
>gi|75907235|ref|YP_321531.1| RNA-binding protein S4 [Anabaena variabilis ATCC 29413]
gi|75700960|gb|ABA20636.1| RNA-binding S4 [Anabaena variabilis ATCC 29413]
Length = 259
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 160/236 (67%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DF +PP L E +L DV+ VA GGYPQAER RL++ E
Sbjct: 24 AEQAIKTWEVVVTDFFSPPELAEIQRVFSRLTDVQLVAWGGYPQAERQRLAIARAELPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ + L I GNF F +H DFLG++LGTGI REK GDII+ GE+GAQ +VVPELA+
Sbjct: 84 QSQVSLVVLEIAGNFLFDSATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L L +V +V V I L L+ P+ K T+EASLR+DA+ASAGF +SRSK+V+
Sbjct: 144 FLQIHLNQVRSVPVKTQPIELAELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI +GDVRVNW VT+ + +++GD++++ GKGR+++GEI T+K ++ V+L +Y+
Sbjct: 204 LIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEIAVTKKERYRVQLTRYM 259
>gi|376002425|ref|ZP_09780258.1| conserved hypothetical protein [Arthrospira sp. PCC 8005]
gi|375329165|emb|CCE16011.1| conserved hypothetical protein [Arthrospira sp. PCC 8005]
Length = 259
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 164/236 (69%), Gaps = 1/236 (0%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-AL 59
+A +A E+ ++FL+PP + E+ +L +++A++ GGYPQAER R+++ E L
Sbjct: 23 LAEQALKTWEITQTEFLSPPEIAEAQGIFRRLTEIQALSWGGYPQAERQRMAIARSEIPL 82
Query: 60 TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
S +AA+ I+GNF F +H DFLGS+LGTGI REK GD+I+ GE+GAQ +V+PEL
Sbjct: 83 DSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKTGDLIVLGERGAQAIVIPELV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+YL +L +V V V I L L+ P+ K+ T+EASLR+DA+ASAGF +SRSK+V
Sbjct: 143 EYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEASLRLDAIASAGFGMSRSKMV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
NLI GDVRVNW V + ++TGD++++ GKGR++IGE++ T+K ++ VEL +Y
Sbjct: 203 NLIDGGDVRVNWKEVKQASIAVKTGDLIAIRGKGRLEIGEVSVTKKQRYRVELTRY 258
>gi|425434483|ref|ZP_18814952.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9432]
gi|389676027|emb|CCH94899.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9432]
Length = 259
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 161/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV +DFL+P VL E ++L DV GGYPQAER RL + + +
Sbjct: 24 AEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQKWGGYPQAERQRLGIARVDLPLT 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
DI ++AL I GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPELAD
Sbjct: 84 VTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPELAD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L +V +V V + IPL L+ PP+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 144 FLSANLRQVRSVPVKTSLIPLTELKVRPPQKKEINTVEASLRLDAIASAGFGISRSKMAE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS GDVRVNW ++++ ++TGD++S GKGR+++GE+ T+K ++ V L +++
Sbjct: 204 AISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTRFI 259
>gi|218441671|ref|YP_002380000.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
7424]
gi|218174399|gb|ACK73132.1| photosystem II S4 domain protein [Cyanothece sp. PCC 7424]
Length = 259
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 161/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A E+ +DF +PPVL E ++L +V+ + GGYPQAER R+ + E
Sbjct: 24 AEQAIRTWEITLTDFFSPPVLAEVQQIFKRLTEVQLITWGGYPQAERQRIGLSRSEIPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
I +AA+ I GNF F P +H DFLG++LGTGI R+K+GDII+ GE+GAQ +VVPEL D
Sbjct: 84 ISQIELAAVDIAGNFLFDPANHRDFLGAMLGTGIVRDKVGDIIVLGERGAQAIVVPELVD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L TSL +V +V V I L L+ PP+ K T+EAS+R+DA+ASAGF +SRSK+
Sbjct: 144 FLQTSLVQVRSVPVKTQPIELTDLKIRPPKKKEMTTVEASMRLDAIASAGFGMSRSKMAE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS+GDVRVNW +T +++GD++SV GKGR+++GE+ T+K ++ ++L +Y+
Sbjct: 204 AISSGDVRVNWKEITSTSHNIQSGDLISVRGKGRLEVGEVAVTKKERYRIQLTRYI 259
>gi|170079381|ref|YP_001736019.1| S4 domain-containing protein [Synechococcus sp. PCC 7002]
gi|169887050|gb|ACB00764.1| S4 domain protein [Synechococcus sp. PCC 7002]
Length = 253
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/228 (47%), Positives = 162/228 (71%), Gaps = 1/228 (0%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAA 68
E++ +DFL+PPVL E++ KL +V+ V GGYPQAER RL++ E L + +AA
Sbjct: 26 EIVQTDFLSPPVLYEALEIFGKLTEVQVVHGGGYPQAERQRLAIAREEIPLDASHVEIAA 85
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L I GNF F +H DFLGS+LGTG+ R+K+GDI++ G++GAQ LV+PEL +L TSL +
Sbjct: 86 LDIAGNFLFDTATHRDFLGSLLGTGLVRDKVGDILVLGDRGAQTLVIPELVSFLETSLVQ 145
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V +V V IPL L+ PP+ K T+EASLR+DA+ SAG +SR+K+ I++G+VR
Sbjct: 146 VRSVPVKTRSIPLEELKVRPPKKKELTTVEASLRLDAIGSAGLGMSRTKMAEAIASGNVR 205
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
VNW T+T++ ++ GD++S+ GKGR+++GEIN T+K ++ V L +++
Sbjct: 206 VNWKTITQSSYNVKAGDLISLRGKGRVEVGEINMTKKERYRVNLTRFV 253
>gi|425450199|ref|ZP_18830031.1| RNA-binding S4 [Microcystis aeruginosa PCC 7941]
gi|389769055|emb|CCI05983.1| RNA-binding S4 [Microcystis aeruginosa PCC 7941]
Length = 259
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 161/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV +DFL+P VL E ++L DV GGYPQAER RL + + +
Sbjct: 24 AEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQKWGGYPQAERQRLGIARVDLPLT 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
DI ++AL I GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPELAD
Sbjct: 84 VTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPELAD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L +V +V V + IPL L+ PP+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 144 FLSANLRQVRSVPVKTSPIPLTELKVRPPQKKEINTVEASLRLDAIASAGFGISRSKMAE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS GDVRVNW ++++ ++TGD++S GKGR+++GE+ T+K ++ V L +++
Sbjct: 204 AISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTRFI 259
>gi|425457020|ref|ZP_18836726.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9807]
gi|389801734|emb|CCI19139.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9807]
Length = 259
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 161/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV +DFL+P VL E ++L DV GGYPQAER RL + + +
Sbjct: 24 AEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMEKWGGYPQAERQRLGIARVDLPLT 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
DI ++AL I GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPELAD
Sbjct: 84 VTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPELAD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L +V +V V + IPL L+ PP+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 144 FLSANLRQVRSVPVKTSLIPLTELKVRPPQKKEINTVEASLRLDAIASAGFGISRSKMAE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS GDVRVNW ++++ ++TGD++S GKGR+++GE+ T+K ++ V L +++
Sbjct: 204 AISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTRFI 259
>gi|17230382|ref|NP_486930.1| hypothetical protein alr2890 [Nostoc sp. PCC 7120]
gi|17131984|dbj|BAB74589.1| alr2890 [Nostoc sp. PCC 7120]
Length = 259
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DFL+PP L E +L DV+ VA GGYPQAER RL++ E L
Sbjct: 24 AEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLVAWGGYPQAERQRLAIARAE-LPL 82
Query: 62 DPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
D V+ L I GNF F +H DFLG++LGTGI REK GDII+ GE+GAQ +VVPELA
Sbjct: 83 DQSQVSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELA 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
++L L +V +V V I L L+ P+ K T+EASLR+DA+ASAGF +SRSK+V
Sbjct: 143 EFLQIHLNQVRSVPVKTQPIELTELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+ I +GDVRVNW VT+ + +++GD++++ GKGR+++GEI T+K ++ V+L +Y+
Sbjct: 203 DFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEVGEIAVTKKERYRVQLTRYM 259
>gi|390441638|ref|ZP_10229680.1| RNA-binding S4 [Microcystis sp. T1-4]
gi|389835056|emb|CCI33806.1| RNA-binding S4 [Microcystis sp. T1-4]
Length = 259
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 162/238 (68%), Gaps = 5/238 (2%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH---PEA 58
A +A EV +DFL+P VL E ++L DV GGYPQAER RL + P A
Sbjct: 24 AEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQKWGGYPQAERQRLGIARVDLPLA 83
Query: 59 LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
+T P ++AL I GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPEL
Sbjct: 84 VTDIP--LSALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPEL 141
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
AD+L +L +V +V V + IPL L+ PP+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 142 ADFLSANLLQVRSVPVKTSPIPLTELKVRPPQKKEINTVEASLRLDAIASAGFGISRSKM 201
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS GDVRVNW ++++ ++TGD++S GKGR+++GE+ T+K ++ V L +++
Sbjct: 202 AEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTRFI 259
>gi|119491309|ref|ZP_01623363.1| RNA-binding S4 [Lyngbya sp. PCC 8106]
gi|119453473|gb|EAW34635.1| RNA-binding S4 [Lyngbya sp. PCC 8106]
Length = 259
Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 162/235 (68%), Gaps = 1/235 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV ++DFL+PP L E+ +L +V+ V GGYPQAER R+++ E
Sbjct: 24 AEQAIKTWEVTYTDFLSPPELAEAQRIFNRLTEVQLVTGGGYPQAERQRIAIAREELPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
D + V A+ I+GNF F +H DFLGS+LGTGI REK GDII+ GE+GA +VVPEL +
Sbjct: 84 DSSVAVEAIDISGNFLFDTATHRDFLGSMLGTGIVREKTGDIIVLGERGAHAVVVPELVE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L +V +V V RI L L+ PP+ K T+EAS+R+DA+ASAGF +SRSK+V+
Sbjct: 144 FLEMNLTQVRSVPVKTKRIELSELKIRPPKKKEMTTVEASMRLDAVASAGFGMSRSKMVS 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
LI GDVRVNW +++ +++GD++++ GKGR+++GE+ T+K ++ V+L +Y
Sbjct: 204 LIDGGDVRVNWKDISQASYQVKSGDLIAIRGKGRLEVGEVAVTKKERYRVQLTRY 258
>gi|434405253|ref|YP_007148138.1| photosystem II S4 domain protein [Cylindrospermum stagnale PCC
7417]
gi|428259508|gb|AFZ25458.1| photosystem II S4 domain protein [Cylindrospermum stagnale PCC
7417]
Length = 259
Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 161/237 (67%), Gaps = 3/237 (1%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DFL+PP L E +L DV+ VA GGYPQAER R+++ E L
Sbjct: 24 AEQAIKTWEVVVTDFLSPPELAEVQRVFSRLTDVQLVAWGGYPQAERQRIAIARSE-LPL 82
Query: 62 DPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
D VA L I GNF F +H DFLG++LGTGI REK GD+I+ GE+GAQ +V PELA
Sbjct: 83 DQSQVALVVLEIAGNFLFDTATHRDFLGAMLGTGIIREKTGDVIVLGERGAQTIVAPELA 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
++L SL++V +V V RI L+ P+ K T+EASLR+DA+ASAGF +SRSK+V
Sbjct: 143 EFLEMSLQQVRSVPVKTRRIDFSELKVREPKKKELTTVEASLRLDAIASAGFAMSRSKMV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+ I +GDVRVNW VT+ +++GD++++ KGR+++GEI T+K ++ V+L +Y+
Sbjct: 203 DFIDSGDVRVNWKEVTQPSAQVKSGDLIAIRSKGRLEVGEIAVTKKDRYRVQLTRYM 259
>gi|440752557|ref|ZP_20931760.1| photosystem II S4 domain protein [Microcystis aeruginosa TAIHU98]
gi|440177050|gb|ELP56323.1| photosystem II S4 domain protein [Microcystis aeruginosa TAIHU98]
Length = 259
Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 161/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV +DFL+P VL E ++L DV GGYPQAER RL + + +
Sbjct: 24 AEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQKWGGYPQAERQRLGIARVDLPLT 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
DI ++AL I GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPELAD
Sbjct: 84 VTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPELAD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L +V +V V + IPL L+ PP+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 144 FLSANLLQVRSVPVKTSLIPLTELKVRPPQKKEINTVEASLRLDAIASAGFGISRSKMAE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS GDVRVNW ++++ ++TGD++S GKGR+++GE+ T+K ++ V L +++
Sbjct: 204 AISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTRFI 259
>gi|218247630|ref|YP_002373001.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
8801]
gi|257061035|ref|YP_003138923.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
8802]
gi|218168108|gb|ACK66845.1| photosystem II S4 domain protein [Cyanothece sp. PCC 8801]
gi|256591201|gb|ACV02088.1| photosystem II S4 domain protein [Cyanothece sp. PCC 8802]
Length = 259
Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 111/227 (48%), Positives = 158/227 (69%), Gaps = 1/227 (0%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
EV SDFL+PPV+ E + L +++ + GGYPQAER R+ + E P I +AA
Sbjct: 32 EVAISDFLSPPVIAEVQRLFKGLTELEMLPWGGYPQAERQRVGIVRAEIPLETPQITLAA 91
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L I GNF F P +H DFLG+ILGTGI REKIGDII+ GE+GAQ +VVPE+ ++L TSL +
Sbjct: 92 LDIAGNFLFDPATHRDFLGAILGTGIVREKIGDIIVLGERGAQVIVVPEMVNFLETSLVQ 151
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V +V V I L L+ PP+TK T+EAS+R+DA+ASAGF +SRSK+ IS GDVR
Sbjct: 152 VRSVPVKVQLIDLSELKIRPPKTKEMNTVEASMRLDAIASAGFGISRSKMAEAISAGDVR 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
VNW +T+ +++GD+++ GKGR+++GE+ T+K ++ ++L ++
Sbjct: 212 VNWKEITQASYNVQSGDLITFRGKGRLEVGEVAVTKKERYRIQLTRF 258
>gi|428305393|ref|YP_007142218.1| photosystem II S4 domain-containing protein [Crinalium epipsammum
PCC 9333]
gi|428246928|gb|AFZ12708.1| photosystem II S4 domain protein [Crinalium epipsammum PCC 9333]
Length = 259
Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 161/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DFL+PP L E +L +V VA GGYPQAER RL++ E
Sbjct: 24 AEQALKTWEVVVTDFLSPPELVEMQQMFGRLTEVHLVAGGGYPQAERQRLAIARSELPLE 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
P + +AA+SI GNF F +H DFLGS+LG GI REK GDII+ GE+GAQ +++PE+ +
Sbjct: 84 LPQVPLAAVSIAGNFLFDSATHRDFLGSMLGCGIVREKTGDIIVLGEQGAQAIIIPEMVE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YL T L +V +V V+ RI L L+ P+ K T+EASLR+DA+ASAGF +SRSK+V
Sbjct: 144 YLETHLTQVRSVPVNTRRIELSELKIREPKKKELTTVEASLRLDAIASAGFGMSRSKMVE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS GDVRVNW +T+ ++TGD+++ GKGR+++GEI T+K ++ V+L +++
Sbjct: 204 FISAGDVRVNWKEITQPSQLVKTGDLIATRGKGRLEVGEIMVTKKERYRVQLTRFI 259
>gi|307152717|ref|YP_003888101.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
7822]
gi|306982945|gb|ADN14826.1| photosystem II S4 domain protein [Cyanothece sp. PCC 7822]
Length = 259
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 158/228 (69%), Gaps = 1/228 (0%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
EV +DFL+PPVL E ++L +V + GGYPQAER RL + E + VAA
Sbjct: 32 EVTLTDFLSPPVLAEVQRIFQRLTEVDLIPWGGYPQAERQRLGISRSEVPFDLSGVAVAA 91
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
+ I GNF F +H DFLG++LGTG+ REK+GDII+ GE+GAQ +VVPEL ++L TSL +
Sbjct: 92 VDIAGNFLFDAANHRDFLGAMLGTGLVREKVGDIIVLGERGAQAIVVPELVEFLETSLVQ 151
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V +V V RI L L+ PP+ K T+EAS+R+DA+ASAGF +SRSK+ IS+GDVR
Sbjct: 152 VRSVPVKTERIELTDLKVRPPQKKEMTTVEASMRLDAIASAGFGMSRSKMAEAISSGDVR 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
VNW +T+ + +GD++S+ GKGR+++GE+ T+K ++ V+L +Y+
Sbjct: 212 VNWKEITQASHNVSSGDLISMRGKGRLEVGEVAVTKKERYRVQLTRYI 259
>gi|86609679|ref|YP_478441.1| S4 domain-containing protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558221|gb|ABD03178.1| S4 domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 259
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 159/235 (67%), Gaps = 8/235 (3%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA------LTSDP 63
+V+ SDFL+PP + E L L +++ A GGYPQAER RL++ E SDP
Sbjct: 25 QVVWSDFLSPPEIAEVQARLCNLTELQVWAWGGYPQAERQRLALARSEVGLDVRDPKSDP 84
Query: 64 DIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
+ + AA+ I GNF F P +H DFLG++LG GIAREK+GDI+L G+ GAQ +VVPE+ DY
Sbjct: 85 EGIPLAAIQIQGNFLFDPATHRDFLGALLGAGIAREKVGDILLLGDSGAQAIVVPEMVDY 144
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
L +L +V V V RIPL L +PPR KS ++EASLR+DA+ASAGF +SRSK+V
Sbjct: 145 LTLNLTQVRTVPVKVGRIPLSQLNIQPPRVKSITSVEASLRLDAVASAGFGISRSKMVEE 204
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
I G+VRVNW +T+ T+ D +++ G+GR++I E+ T+KG+F V++ +YL
Sbjct: 205 IQRGEVRVNWKPITQASYTVGPQDWIAIRGRGRLQIEEVAETKKGRFRVQMRRYL 259
>gi|166365176|ref|YP_001657449.1| RNA-binding protein S4 [Microcystis aeruginosa NIES-843]
gi|425465358|ref|ZP_18844667.1| RNA-binding S4 [Microcystis aeruginosa PCC 9809]
gi|166087549|dbj|BAG02257.1| RNA-binding S4 [Microcystis aeruginosa NIES-843]
gi|389832398|emb|CCI23996.1| RNA-binding S4 [Microcystis aeruginosa PCC 9809]
Length = 259
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 161/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV +DFL+P VL E ++L DV GGYPQAER RL + + +
Sbjct: 24 AEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQKWGGYPQAERQRLGIARVDLPLT 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
DI ++AL I GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPELAD
Sbjct: 84 VTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPELAD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L +V +V V + IPL L+ PP+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 144 FLSANLLQVRSVPVKTSPIPLTELKVRPPQKKEINTVEASLRLDAIASAGFGISRSKMAE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS GDVRVNW ++++ ++TGD++S GKGR+++GE+ T+K ++ V L +++
Sbjct: 204 AISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTRFI 259
>gi|409990192|ref|ZP_11273604.1| RNA-binding protein S4 [Arthrospira platensis str. Paraca]
gi|409938945|gb|EKN80197.1| RNA-binding protein S4 [Arthrospira platensis str. Paraca]
Length = 259
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 162/236 (68%), Gaps = 1/236 (0%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-AL 59
+A +A E+ ++FL+PP + E+ ++L +V+A + GGYPQAER R+++ E L
Sbjct: 23 LAEQALKTWEITQTEFLSPPEIAEAQGIFQRLTEVQAFSWGGYPQAERQRMAIARSELPL 82
Query: 60 TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
S +AA+ I+GNF F +H DFLGS+LGTGI REK GDII+ GE+G Q +V+PEL
Sbjct: 83 DSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKTGDIIVLGERGGQAIVIPELV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+YL +L +V V V I L L+ P+ K+ T+EASLR+DA+ASAGF +SRSK+V
Sbjct: 143 EYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEASLRLDAIASAGFGMSRSKMV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
LI GDVRVNW V + ++TGD++++ GKGR++IGE++ T+K ++ VEL +Y
Sbjct: 203 TLIDGGDVRVNWKEVKQASIAIKTGDLIAIRGKGRLEIGEVSVTKKQRYRVELTRY 258
>gi|425440202|ref|ZP_18820510.1| RNA-binding S4 [Microcystis aeruginosa PCC 9717]
gi|389719422|emb|CCH96747.1| RNA-binding S4 [Microcystis aeruginosa PCC 9717]
Length = 259
Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 161/238 (67%), Gaps = 5/238 (2%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH---PEA 58
A +A E+ +DFL+P VL E ++L DV GGYPQAER RL + P
Sbjct: 24 AEQAIKTWEMTVTDFLSPAVLAEVERVFQRLTDVSMQKWGGYPQAERQRLGIARVDLPWT 83
Query: 59 LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
+T P ++AL I GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPEL
Sbjct: 84 VTDIP--LSALDIAGNFLFDTANHRDFLGAMLGTGIVREKVGDIIVLGERGAQAIVVPEL 141
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
AD+L +L +V +V V + IPL L+ PP+ K T+EASLR+DA+ASAGF +SRSK+
Sbjct: 142 ADFLCANLLQVRSVPVKTSPIPLTELKVRPPQKKEINTVEASLRLDAIASAGFGISRSKM 201
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS GDVRVNW ++++ ++TGD++S GKGR+++GE+ T+K ++ V L +++
Sbjct: 202 AEAISAGDVRVNWKDISQSSYNVKTGDLISFRGKGRLEVGEVTVTKKERYRVHLTRFI 259
>gi|291568923|dbj|BAI91195.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 259
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 162/236 (68%), Gaps = 1/236 (0%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-AL 59
+A +A E+ ++FL+PP + E+ ++L +V+A + GGYPQAER R+++ E L
Sbjct: 23 LAEQALKTWEITQTEFLSPPEIAEAQGIFQRLTEVQAFSWGGYPQAERQRMAIARSELPL 82
Query: 60 TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
S +AA+ I+GNF F +H DFLGS+LGTGI REK GDII+ GE+G Q +V+PEL
Sbjct: 83 DSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKTGDIIVLGERGGQAIVIPELV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+YL +L +V V V I L L+ P+ K+ T+EASLR+DA+ASAGF +SRSK+V
Sbjct: 143 EYLEMNLTQVRTVPVKVQPIDLSELKVREPKKKAMTTVEASLRLDAIASAGFGMSRSKMV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
LI GDVRVNW V + ++TGD++++ GKGR+++GE++ T+K ++ VEL +Y
Sbjct: 203 TLIDGGDVRVNWKEVKQASIAIKTGDLIAIRGKGRLEVGEVSVTKKQRYRVELTRY 258
>gi|86606443|ref|YP_475206.1| S4 domain-containing protein [Synechococcus sp. JA-3-3Ab]
gi|86554985|gb|ABC99943.1| S4 domain protein [Synechococcus sp. JA-3-3Ab]
Length = 262
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 161/231 (69%), Gaps = 4/231 (1%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT----SDPDI 65
+V+ SDFL+P + E L LA+++ +A GGY QAER RL++ PE ++
Sbjct: 32 QVVWSDFLSPAEVAEVQSRLHNLAELQVMAWGGYAQAERQRLALARPEVSLEVEGAEGIP 91
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+AA+ I GNF F P +H DFLG++L TGIAREK+GDI++ GE GAQ +VVPEL DYL +
Sbjct: 92 LAAVQIQGNFLFDPATHRDFLGALLATGIAREKVGDILVVGEFGAQAIVVPELVDYLSLN 151
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L +V +V V +RIPL L+ +PPR KS ++EASLR+DA+ASAGF LSRSK+V I G
Sbjct: 152 LTQVRSVPVKVSRIPLSQLKVQPPRVKSITSVEASLRLDAVASAGFGLSRSKMVEEIQRG 211
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+VRVNW +T+ T+ D +++ G+GR++I E+ T+KG+F +++ +YL
Sbjct: 212 EVRVNWKPITQASYTVGPQDWIAIRGRGRLQIEEVAETKKGRFRIQMKRYL 262
>gi|427723367|ref|YP_007070644.1| photosystem II S4 domain-containing protein [Leptolyngbya sp. PCC
7376]
gi|427355087|gb|AFY37810.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 7376]
Length = 260
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/228 (46%), Positives = 163/228 (71%), Gaps = 1/228 (0%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAA 68
+++ +DFL+PPVL E+ L +L + + GGYPQAER RL++ E L ++ +AA
Sbjct: 33 DIVQTDFLSPPVLYEATAILGRLTEFSFIKGGGYPQAERQRLAIARNEIPLEAEHIEIAA 92
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
+ I+GNF F +H DFLGS+LGTG+ REK+GDI++ G++GAQ LV+PEL +L TSL +
Sbjct: 93 IDISGNFLFDTATHRDFLGSLLGTGLVREKVGDILVLGDRGAQALVIPELVSFLETSLVQ 152
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V +V V IP+ L+ PP+ K T+EASLR+DA+ASAG +SRSK+ + IS G+V+
Sbjct: 153 VRSVPVKTRPIPIEELKVRPPKKKELTTVEASLRLDAIASAGLGMSRSKMADAISKGNVK 212
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
VNW T+T+ ++ GD++S+ GKGR+++GE+N T+K ++ V+L +++
Sbjct: 213 VNWKTITQTSYNVKDGDLISLRGKGRVEVGEVNMTKKERYRVQLTRFV 260
>gi|427707479|ref|YP_007049856.1| photosystem II S4 domain-containing protein [Nostoc sp. PCC 7107]
gi|427359984|gb|AFY42706.1| photosystem II S4 domain protein [Nostoc sp. PCC 7107]
Length = 259
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 164/237 (69%), Gaps = 3/237 (1%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DFL+PP L E +L +V+ +A GGYPQAER R+++ E L
Sbjct: 24 AEQAIKTWEVVLTDFLSPPELAEIQRIFNRLTEVQLLAWGGYPQAERQRMAIARGE-LPL 82
Query: 62 DPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
D VA L + GNF F +H DFLG++LGTGI REK GD+I+ GE+GAQ +VVPE+A
Sbjct: 83 DESQVALVVLEVAGNFLFDTATHRDFLGAMLGTGIVREKTGDVIVLGERGAQVIVVPEIA 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
++L +L++V +V V RI + L+ P+ K T+EASLR+DA+ASAGF +SRSK+V
Sbjct: 143 EFLEMNLQQVRSVPVKTQRIDISELKIREPKKKELTTVEASLRLDAIASAGFGMSRSKMV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+LI GDVRVNW +T+ +++GD+V++ GKGR+++GE+ T+K ++ V+L +Y+
Sbjct: 203 DLIDAGDVRVNWKDITQASFQVKSGDLVAIRGKGRLEVGEVAITKKDRYRVQLTRYM 259
>gi|359460617|ref|ZP_09249180.1| S4-like domain-containing protein [Acaryochloris sp. CCMEE 5410]
Length = 259
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 161/235 (68%), Gaps = 1/235 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ S FL+PP L E+ L +V +A GGYPQAER R+++ H +
Sbjct: 24 ATQALKTWEVVVSAFLSPPELAEAQQMFAPLTEVSILAWGGYPQAERQRIAIAHSDLPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ +AALSI+GNF F P SH DFLG++LGTGI R+++GDI++ GE+GAQ + P+L
Sbjct: 84 QSQVDLAALSISGNFLFDPASHRDFLGALLGTGIVRDQVGDILVLGERGAQAIASPQLVP 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L T L +V V V IP L+ PR K T+EAS+R+DA+ASAGF LSRSK+VN
Sbjct: 144 FLQTHLTQVRTVPVQVEPIPFEQLKVREPRCKEMTTVEASMRLDAVASAGFGLSRSKMVN 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
LI+ GDVRVNW ++++ L+TGD+V++ GKGR+++GE+ T+K ++ ++L ++
Sbjct: 204 LINTGDVRVNWKEISQSSYGLKTGDLVTIRGKGRLELGEVQITKKERYRIQLKRF 258
>gi|158337091|ref|YP_001518266.1| S4-like domain-containing protein [Acaryochloris marina MBIC11017]
gi|158307332|gb|ABW28949.1| uncharacterized conserved protein, contains S4-like domain
[Acaryochloris marina MBIC11017]
Length = 259
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 161/235 (68%), Gaps = 1/235 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ S FL+PP L E+ L +V +A GGYPQAER R+++ H +
Sbjct: 24 ATQALKTWEVVVSAFLSPPELAEAQQMFAPLTEVSILAWGGYPQAERQRIAIAHSDLPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ +AALSI+GNF F P SH DFLG++LGTGI R+++GDI++ GE+GAQ + P+L
Sbjct: 84 QSQVELAALSISGNFLFDPASHRDFLGALLGTGIVRDQVGDILVLGERGAQAIASPQLVP 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L T L +V V V IP L+ PR K T+EAS+R+DA+ASAGF LSRSK+VN
Sbjct: 144 FLQTHLTQVRTVPVQVEPIPFEQLKVREPRCKEMTTVEASMRLDAVASAGFGLSRSKMVN 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
LI+ GDVRVNW ++++ L+TGD+V++ GKGR+++GE+ T+K ++ ++L ++
Sbjct: 204 LINTGDVRVNWKEISQSSYGLKTGDLVTIRGKGRLELGEVQITKKERYRIQLKRF 258
>gi|186683162|ref|YP_001866358.1| RNA-binding S4 domain-containing protein [Nostoc punctiforme PCC
73102]
gi|186465614|gb|ACC81415.1| RNA-binding S4 domain protein [Nostoc punctiforme PCC 73102]
Length = 259
Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 159/236 (67%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DFL+PP L E +L +V+ VA GGYPQAER R+++ E
Sbjct: 24 AEQAIKTWEVVLTDFLSPPELAEIQRVFNRLTEVQLVAWGGYPQAERQRIAIARSELPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ + A+ I GNF F SH DFLG++LGTGI REK GD+I+ GE+GAQ +V PEL +
Sbjct: 84 QSQVSLVAVEIAGNFLFDTASHRDFLGAMLGTGIVREKTGDVIVLGERGAQAIVAPELVE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L SL++V +V V RI + L P+ K T+EASLR+DA+ASAGF +SRSK+V+
Sbjct: 144 FLEMSLKQVRSVPVKTQRIEITELRVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
I GDVRVNW VT+ + +++GD++++ KGR+++GEI T+K ++ V+L +Y+
Sbjct: 204 FIDAGDVRVNWKEVTQASSQVKSGDLIAIRSKGRLEVGEIAVTKKDRYRVQLTRYM 259
>gi|220907729|ref|YP_002483040.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
7425]
gi|219864340|gb|ACL44679.1| photosystem II S4 domain protein [Cyanothece sp. PCC 7425]
Length = 259
Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 158/228 (69%), Gaps = 1/228 (0%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA-LTSDPDIVAA 68
+V+ SDFL+PP L ES L +L ++ ++ GGYPQAER RL++ E L + + A
Sbjct: 32 DVVCSDFLSPPELAESQTLLARLTEIHSLGWGGYPQAERQRLAIARQEVPLEGEQVPLVA 91
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L I GNF F P SH DFLG+ILGTGI REK+GDII+ GE+GAQ + E+A++L L +
Sbjct: 92 LEIAGNFLFDPASHRDFLGAILGTGIVREKVGDIIVLGERGAQAIATTEMAEFLELHLTQ 151
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V V V RI L L+ PP+ K T+EASLR+DA+ASAGF +SRSK+ +LI+ GDVR
Sbjct: 152 VRTVPVQTRRIELSELKIRPPQKKELTTVEASLRLDAIASAGFGMSRSKMADLIAAGDVR 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
VNW +++ TL+ GD+V++ GKGR+++G++ T+K ++ V+L + +
Sbjct: 212 VNWKDISQPSFTLKAGDLVAIRGKGRLEVGDVQVTKKERYRVQLTRLI 259
>gi|388517071|gb|AFK46597.1| unknown [Medicago truncatula]
Length = 222
Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 99/128 (77%), Positives = 120/128 (93%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
MARRAS +RE+LH++FLTPPVLKESM LEKLAD+KA+AQGGYPQAERCR+SVGHP+ LT
Sbjct: 90 MARRASLKREILHTNFLTPPVLKESMRVLEKLADIKALAQGGYPQAERCRISVGHPDELT 149
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
SDPD+++ALSITGNF F+PCSHGDFLGSILGTGIAREK+GDIILQGE+GAQ +VVPEL +
Sbjct: 150 SDPDVISALSITGNFQFEPCSHGDFLGSILGTGIAREKVGDIILQGEQGAQIIVVPELVE 209
Query: 121 YLITSLEK 128
+L ++L++
Sbjct: 210 FLTSALDR 217
>gi|16330752|ref|NP_441480.1| hypothetical protein sll1252 [Synechocystis sp. PCC 6803]
gi|383322494|ref|YP_005383347.1| hypothetical protein SYNGTI_1585 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325663|ref|YP_005386516.1| hypothetical protein SYNPCCP_1584 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491547|ref|YP_005409223.1| hypothetical protein SYNPCCN_1584 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384436814|ref|YP_005651538.1| hypothetical protein SYNGTS_1585 [Synechocystis sp. PCC 6803]
gi|451814910|ref|YP_007451362.1| hypothetical protein MYO_116000 [Synechocystis sp. PCC 6803]
gi|1653245|dbj|BAA18160.1| sll1252 [Synechocystis sp. PCC 6803]
gi|339273846|dbj|BAK50333.1| hypothetical protein SYNGTS_1585 [Synechocystis sp. PCC 6803]
gi|359271813|dbj|BAL29332.1| hypothetical protein SYNGTI_1585 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359274983|dbj|BAL32501.1| hypothetical protein SYNPCCN_1584 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278153|dbj|BAL35670.1| hypothetical protein SYNPCCP_1584 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407958671|dbj|BAM51911.1| hypothetical protein BEST7613_2980 [Bacillus subtilis BEST7613]
gi|451780879|gb|AGF51848.1| hypothetical protein MYO_116000 [Synechocystis sp. PCC 6803]
Length = 259
Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 160/236 (67%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALT 60
A +A EV+ SDF PP++ E + L ++ + GGYPQAER RL++ E L
Sbjct: 24 AEQALRTWEVVVSDFCAPPLIAEIQTRFDSLTELHFLPWGGYPQAERQRLAIARAEIPLE 83
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
++ + AL + GNF F P SH DFLG++LGTG+ REK+GDIIL GE+GAQ +VVPE+A+
Sbjct: 84 TEQIPLTALDVAGNFLFDPASHRDFLGALLGTGLVREKVGDIILLGERGAQAIVVPEVAE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
++ L +V V V I L L+ PP+TK T+EASLR+DA+ASAGF LSRSK+ +
Sbjct: 144 FISLHLTQVRTVPVKAKAIALEELKIRPPKTKEMTTVEASLRLDAIASAGFGLSRSKMAD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
++ G+V+VNW VT++ L+ GD+V+ GKGR++IGEI T+K ++ ++L +YL
Sbjct: 204 AVTQGNVQVNWKPVTQSSYALKAGDLVTYRGKGRLEIGEITVTKKERYRIQLTRYL 259
>gi|282897968|ref|ZP_06305963.1| RNA-binding S4 [Raphidiopsis brookii D9]
gi|281197112|gb|EFA72013.1| RNA-binding S4 [Raphidiopsis brookii D9]
Length = 259
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 160/236 (67%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA-LT 60
A +A EV+ +DFL+PP L E +L +V VA GGYPQAER R+++ E L
Sbjct: 24 AEQAIKTWEVVITDFLSPPELAEIERVFNRLTEVHLVAWGGYPQAERQRVAIIRSEMPLD 83
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
V L I GNF F +H DFLG++LGTGI REK GDII+ GE+GAQ +VVPELA+
Sbjct: 84 VSQVAVTVLDIAGNFLFDTATHRDFLGAMLGTGIVREKTGDIIILGERGAQAIVVPELAE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L++V +V V I L+ P+ K T+EASLR+DA+ASAGF +SRSK+V+
Sbjct: 144 FLTMNLQQVRSVPVKTQVIDPSELKIREPKKKELTTVEASLRLDAIASAGFGMSRSKMVD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI +GDVRVNW +T++ L+ GD++++ GKGR+++GEI T+K ++ ++L +Y+
Sbjct: 204 LIDSGDVRVNWKEITQSSYQLKMGDLIAIRGKGRLQVGEIAVTKKDRYRIQLTRYM 259
>gi|443312798|ref|ZP_21042413.1| photosystem II S4 domain protein [Synechocystis sp. PCC 7509]
gi|442777254|gb|ELR87532.1| photosystem II S4 domain protein [Synechocystis sp. PCC 7509]
Length = 259
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 161/236 (68%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DFL+PP L E +L +V+ +A GGY QAER RL+V E
Sbjct: 24 AEQAIKTWEVVLTDFLSPPELAELQKVFSRLTEVQLLAWGGYEQAERQRLAVARSEMPLE 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ + AL I GNF F +H DFLG++LGTGI REK GD+I+ GE+GAQ +V PE+A+
Sbjct: 84 RHQVELVALEIAGNFLFDTATHRDFLGAMLGTGIVREKTGDVIVLGERGAQAIVTPEIAE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L SL++V +V V RI L L+ P+ K T+EASLR+DA+ASAGF +SRSK+ +
Sbjct: 144 FLEMSLQQVRSVPVKTQRIDLSELKIREPKKKESTTVEASLRLDAIASAGFGMSRSKMSD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI GDVRVNW +T+ +++GD+++VSGKGR+++GEI T+K ++ ++L +Y+
Sbjct: 204 LIDGGDVRVNWKDITQASYQVKSGDLIAVSGKGRLEVGEIMITKKERYRIQLTRYM 259
>gi|282899112|ref|ZP_06307093.1| RNA-binding S4 [Cylindrospermopsis raciborskii CS-505]
gi|281196028|gb|EFA70944.1| RNA-binding S4 [Cylindrospermopsis raciborskii CS-505]
Length = 259
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 160/236 (67%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA-LT 60
A +A EV+ +DFL+PP L E +L +V VA GGY QAER R+++ E L
Sbjct: 24 AEQAIKTWEVVITDFLSPPELAEIERVFSRLMEVHLVAWGGYLQAERQRVAIARSEMPLD 83
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+V L I GNF F +H DFLG++LGTGI REK GDII+ GE+GAQ +VVPELA+
Sbjct: 84 ISQVVVTVLDIAGNFLFDTATHRDFLGAMLGTGIVREKTGDIIILGERGAQAIVVPELAE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L +L++V +V V I L+ P+ K T+EASLR+DA+ASAGF +SRSK+V+
Sbjct: 144 FLTMNLQQVRSVPVKTQVIDSSELKIREPKKKELTTVEASLRLDAIASAGFGMSRSKMVD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI +GDVRVNW +T++ L+ GD++++ GKGR+++GEI T+K ++ ++L +Y+
Sbjct: 204 LIDSGDVRVNWKEITQSSYQLKMGDLIAIRGKGRLQVGEIAVTKKDRYRIQLTRYM 259
>gi|443314925|ref|ZP_21044448.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 6406]
gi|442785487|gb|ELR95304.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 6406]
Length = 276
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 159/229 (69%), Gaps = 3/229 (1%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV--A 67
EV+ +DFL+PP L E+ ++L +V+ +A GGYPQAER R ++ E L DP +
Sbjct: 49 EVVVTDFLSPPELVEAQSLFQRLTEVQFIASGGYPQAERQRGAIARAE-LPLDPSQIPLT 107
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
+ I GNF F +H DFLG++LGTG+ REK+GDII+ GE+GAQ ++VPEL D+L SL
Sbjct: 108 LVDIAGNFLFDTATHRDFLGALLGTGLVREKVGDIIVLGERGAQAIMVPELVDFLTLSLT 167
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+V +V V I L P+ K T+EASLR+DA+ASAGF +SRSK+V+LIS GDV
Sbjct: 168 QVRSVPVKTRPIDWQELRVREPKKKELTTVEASLRLDAVASAGFGMSRSKMVDLISAGDV 227
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
RVNW ++ ++ TL +GD+V++ GKGR++IGE+ T+K ++ V L +YL
Sbjct: 228 RVNWKSIDQSSHTLHSGDLVAIRGKGRLEIGEVVVTKKQRYRVNLTRYL 276
>gi|428772974|ref|YP_007164762.1| photosystem II S4 domain-containing protein [Cyanobacterium
stanieri PCC 7202]
gi|428687253|gb|AFZ47113.1| photosystem II S4 domain protein [Cyanobacterium stanieri PCC 7202]
Length = 259
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A E++ +DFL+PPVL E +L +V+ + GG+PQAER R+ + H E +
Sbjct: 24 AEQAIKTWELVVTDFLSPPVLAEVNEIFAQLTEVQIIPWGGFPQAERKRVGI-HREEIPC 82
Query: 62 DPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
D VAAL I GNF F +H DFLG+ILG G+ REK+GDII+ GE+GAQ +V PE+
Sbjct: 83 DVSQMPVAALDIAGNFLFDTATHRDFLGAILGAGVVREKVGDIIVLGERGAQVVVNPEMV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
D+ +SL +V +V V RI L L+ P+ K T+EASLR+DA+AS GF LSRSK+V
Sbjct: 143 DFFESSLVQVRSVPVKTKRIELSDLKVREPKKKEMTTVEASLRLDAIASYGFGLSRSKMV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+ I+NGDVRVNW VT++ L+TGD+VS GKGR++IG+I+ T+K ++ + L +++
Sbjct: 203 DAINNGDVRVNWKEVTQSSYNLKTGDLVSFRGKGRLEIGDISITKKERYRIALTRFV 259
>gi|428310855|ref|YP_007121832.1| photosystem II S4 domain-containing protein [Microcoleus sp. PCC
7113]
gi|428252467|gb|AFZ18426.1| photosystem II S4 domain protein [Microcoleus sp. PCC 7113]
Length = 259
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 163/237 (68%), Gaps = 1/237 (0%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A +A EV+ +DFL+PP + + ++L +V+ +A GGYPQAER R+++ E
Sbjct: 23 LAEQAIKTWEVVFTDFLSPPEVAQIQQQFQRLTEVQLLAWGGYPQAERQRIAIARSELPL 82
Query: 61 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+ VAAL I GNF F P +H DFLG+ILGTG+ R+KIGDII+ GE+G Q +VVPE+
Sbjct: 83 DRAQVAVAALDIAGNFLFDPATHRDFLGAILGTGLVRDKIGDIIVLGERGGQVIVVPEIM 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+L T L +V +V V I L L+ P+ K T+EAS+R+DA+ASAGF +SR+K+
Sbjct: 143 GFLETQLTQVRSVPVKTRPIDLSELKIREPKKKEMTTVEASMRLDAIASAGFGMSRNKMA 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+LI+ GDVRVNW +++ +++GD++++ GKGR++IGE+ T+K ++ V+L +++
Sbjct: 203 DLITGGDVRVNWKDISQASHIVKSGDLIAIRGKGRLEIGEVAVTKKDRYRVQLTRFM 259
>gi|428215265|ref|YP_007088409.1| photosystem II S4 domain-containing protein [Oscillatoria acuminata
PCC 6304]
gi|428003646|gb|AFY84489.1| photosystem II S4 domain protein [Oscillatoria acuminata PCC 6304]
Length = 259
Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 162/239 (67%), Gaps = 5/239 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH---PE 57
+A RA EV +DFL+P L E+ A +L +V VA GGYPQAER R+++ P
Sbjct: 23 LADRALKTWEVAVTDFLSPIELMETQTAFNRLTEVHLVAFGGYPQAERQRVAIARIDLPL 82
Query: 58 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
TS P +AAL I GNF F SH DFLGSILGTGI REK+GDII+ GE+GAQ +V P+
Sbjct: 83 DATSVP--LAALEIAGNFLFDSASHRDFLGSILGTGIVREKVGDIIVLGERGAQAVVSPD 140
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
L ++L SL +V +V V RI L L+ P+ K T+EAS+R+DA+ASAGF +SRSK
Sbjct: 141 LVEFLEMSLTQVRSVPVKTQRIELGELKIREPKKKELTTVEASMRLDAIASAGFGMSRSK 200
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+ +LI+ GDVRVNW +++ ++ D++++ GKGR+++G++ T+K ++ ++L +YL
Sbjct: 201 MADLINGGDVRVNWKDISQTSYQVKPNDLIAIRGKGRLEVGDVQVTKKERYRIQLTRYL 259
>gi|427720370|ref|YP_007068364.1| photosystem II S4 domain-containing protein [Calothrix sp. PCC
7507]
gi|427352806|gb|AFY35530.1| photosystem II S4 domain protein [Calothrix sp. PCC 7507]
Length = 259
Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 157/236 (66%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DFL+PP L E +L +V+ V GGYPQAER R+++ E
Sbjct: 24 AEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLVTWGGYPQAERQRIAIARAEMPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ + L I GNF F SH DFLG++LGTGI REK GDI++ GE+GAQ +V P+L +
Sbjct: 84 QSQVDLVLLEIAGNFLFDTASHRDFLGAMLGTGIVREKTGDIVVLGERGAQAIVAPDLVE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L SL +V +V V RI L+ P+ K T+EASLR+DA+ASAGF +SRSK+V+
Sbjct: 144 FLEMSLNQVRSVPVKTRRIDFSELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI +GDVRVNW VT+ + ++ GD++++ KGR+++GEI T+K ++ V+L +Y+
Sbjct: 204 LIDSGDVRVNWKEVTQASSQVKAGDLIAIRTKGRLEVGEIAVTKKDRYRVQLTRYM 259
>gi|113477614|ref|YP_723675.1| RNA-binding protein S4 [Trichodesmium erythraeum IMS101]
gi|110168662|gb|ABG53202.1| RNA-binding S4 [Trichodesmium erythraeum IMS101]
Length = 259
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 161/237 (67%), Gaps = 1/237 (0%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A +A E+ SDFL+PP + ES +KL +V V+ GGYPQAER RL++ +
Sbjct: 23 LAEQAIKTWEITQSDFLSPPEIFESETIFQKLTEVDIVSWGGYPQAERKRLAIARSDLPI 82
Query: 61 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+ + A++I GNF F +H DFLGS+LGTGI REK GDII+ GE+GAQ +VVP+L
Sbjct: 83 DTSSVELKAINIEGNFLFDTATHRDFLGSMLGTGIEREKTGDIIVLGERGAQAIVVPKLV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+YL + ++V +V V I L+ P+ K T+EAS+R+DA+ASAGF +SRSK+V
Sbjct: 143 EYLEMNFQQVRSVPVKIKPIEFSELKIRQPKKKELTTVEASMRLDAVASAGFGMSRSKMV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+LI GDVRVNW +++ T++TGD++++ GKGR+++G+I T+K ++ V L +Y+
Sbjct: 203 DLIDGGDVRVNWKEISQASYTVKTGDLIAIRGKGRLEVGDIAITKKERYRVHLTRYV 259
>gi|428780106|ref|YP_007171892.1| photosystem II S4 domain-containing protein [Dactylococcopsis
salina PCC 8305]
gi|428694385|gb|AFZ50535.1| photosystem II S4 domain protein [Dactylococcopsis salina PCC 8305]
Length = 259
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 158/237 (66%), Gaps = 1/237 (0%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A +A EV+ +DFL+PPV+ E+ L +++ + GGYPQAER R+++ +
Sbjct: 23 IAEQAMKTWEVVCTDFLSPPVMVEARERFSSLTEIQFIVWGGYPQAERSRMAIARSDLPL 82
Query: 61 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+ +AAL + GNF F +H DFLG+ILGTG+ R K+GDII+ GE+GAQ LVVPEL
Sbjct: 83 DQSQVPIAALDVAGNFLFDTANHRDFLGAILGTGVVRGKVGDIIVLGERGAQILVVPELV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+L +L +V +V V I L L+ PP+ K T+EAS+R+DA+ASA F +SRSK+
Sbjct: 143 SFLEANLNQVRSVPVKTREITLEELKIRPPKKKEMTTVEASMRLDAVASAAFGMSRSKMA 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+ I G+VRVNW +T+ L+ GD+V+V GKGR +IGE++ T+K ++ V+L +YL
Sbjct: 203 SAIEQGNVRVNWKPITQTSHALKEGDLVAVQGKGRAEIGEVSITKKQRYRVQLTRYL 259
>gi|254416092|ref|ZP_05029847.1| photosystem II S4 domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196177025|gb|EDX72034.1| photosystem II S4 domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 259
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 160/236 (67%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A EV+ +DFL+PPVL E +L +V+ + GGYPQAER RL + E
Sbjct: 24 AEQAIKTWEVVLTDFLSPPVLVEIQQQFARLTEVQLLPWGGYPQAERQRLGITREELPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ VAAL I GNF F P +H DFLG+ILGTGI REK+GDII+ GE+GAQ +V+PE+
Sbjct: 84 QSQVEVAALDIEGNFLFDPATHRDFLGAILGTGIVREKVGDIIVLGERGAQVIVIPEIVP 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L T L +V +V V I L L+ P+ K T+EAS+R+DA+ASAGF SRSK+ +
Sbjct: 144 FLETQLTQVRSVPVKTRPIQLSQLKIREPKKKEMTTVEASMRLDAIASAGFGTSRSKMAD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
LI GDVRVNW V++ +++ GD++++ GKGR+++G+++ T+K ++ ++L +++
Sbjct: 204 LIGAGDVRVNWKEVSQASYSVKPGDLIAIRGKGRLQVGDVSITKKERYRIQLTRFI 259
>gi|303285910|ref|XP_003062245.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456656|gb|EEH53957.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 244
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 149/209 (71%), Gaps = 3/209 (1%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 90
++ADV A GGY +AER RL +G E L + P V+A ++GNF F H DFLG++L
Sbjct: 36 RMADVDARPWGGYDRAERVRLVIGRAEVLDAPPACVSAYKLSGNFMFDAADHRDFLGAVL 95
Query: 91 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITS---LEKVGNVSVSCTRIPLLALEYE 147
GTGI R+++GDI++QGE+GAQ L PE+A +L + L V +V V+C PL L
Sbjct: 96 GTGIERDRVGDILVQGERGAQVLATPEMATFLSQARPALTSVRSVPVACAAAPLSDLRVP 155
Query: 148 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 207
PPR +F ++EAS+R+DA+ASAGF++SRSK+ +L+++G VRVNW K T + TGD++
Sbjct: 156 PPRVDAFNSVEASMRLDAIASAGFRMSRSKMSDLVTSGAVRVNWREGCKPKTVVATGDVI 215
Query: 208 SVSGKGRIKIGEINSTRKGKFAVELIQYL 236
S+ GKGR+++GE+ +T+KGKF+V+L +YL
Sbjct: 216 SLRGKGRVEVGEVETTKKGKFSVQLTRYL 244
>gi|428769447|ref|YP_007161237.1| photosystem II S4 domain-containing protein [Cyanobacterium
aponinum PCC 10605]
gi|428683726|gb|AFZ53193.1| photosystem II S4 domain protein [Cyanobacterium aponinum PCC
10605]
Length = 259
Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 157/236 (66%), Gaps = 1/236 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A +A E++ +DFL+PPVL E L +VK V GGYPQAER R+ + E
Sbjct: 24 AEKAVKTWELVVTDFLSPPVLAEVNEIFASLTEVKIVCWGGYPQAERQRVGIHREEVYAG 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+I + AL + GNF F +H DFLG+ILGTGI R+KIGDII+ GE+GAQ +V PE+ +
Sbjct: 84 VAEIPLMALDVAGNFLFDTATHRDFLGAILGTGIVRDKIGDIIVLGERGAQVIVTPEIGE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+L TSL +V +V V +I L L+ PP+ K T+EASLR+DA+AS GF +SRSK+ +
Sbjct: 144 FLETSLTQVRSVPVKTGKIDLSDLKIRPPKKKEMTTVEASLRLDAIASFGFGISRSKMAD 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
I+NGDVRVNW +T+ ++ GD+VS GKGR++IG I T+K ++ + L +++
Sbjct: 204 AINNGDVRVNWKEITQPSYNVKDGDLVSFRGKGRLEIGAIALTKKERYRINLTRFV 259
>gi|427420696|ref|ZP_18910879.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 7375]
gi|425756573|gb|EKU97427.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 7375]
Length = 259
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 156/228 (68%), Gaps = 1/228 (0%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
E + +DFL+PP L E+ +L D+ GGYPQAER RL++ E ++ +A
Sbjct: 32 EPVTTDFLSPPELYEAQAIFGRLTDIHTQVHGGYPQAERQRLTIARTEIPLEGQELPLAL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
LS+ GNF F +H DFLG++LGTGI REK+GDII+ GE+GAQ +VVPEL ++L SL +
Sbjct: 92 LSVAGNFLFDTATHRDFLGALLGTGIVREKVGDIIVLGERGAQLIVVPELVEFLEISLTQ 151
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V +V V I L P+ K T+EAS+R+DA+ASAGF +SRSK+ ++I+ GDVR
Sbjct: 152 VRSVPVKTKPIDWSELRVREPKKKEITTVEASMRLDAVASAGFGMSRSKMADMITAGDVR 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
VNW T++++ L++GD+V++ GKGR++IG++ T+K ++ + L +Y+
Sbjct: 212 VNWKTISQSSHGLKSGDLVAIRGKGRLEIGDVMITKKQRYRIGLTRYV 259
>gi|428777211|ref|YP_007168998.1| photosystem II S4 domain-containing protein [Halothece sp. PCC
7418]
gi|428691490|gb|AFZ44784.1| photosystem II S4 domain protein [Halothece sp. PCC 7418]
Length = 259
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 158/237 (66%), Gaps = 1/237 (0%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A +A E + +DFL+PPV E+ L +++ + GGYPQAER R+ + E
Sbjct: 23 IAEQAIKTWETVCTDFLSPPVAVEAQDKFSLLTEIQFMVWGGYPQAERVRMGITRAELPL 82
Query: 61 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+ +AAL ++GNF F +H DFLG+ILGTG+ R+K+GDI++ GE+GAQ LVVPEL
Sbjct: 83 DQSQVPIAALDVSGNFLFDTANHRDFLGAILGTGVVRQKVGDIVVLGERGAQILVVPELV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+L +L +V +V V I L L+ PP+ K T+EAS+R+DA+ SA F +SRSK+
Sbjct: 143 SFLEANLNQVRSVPVKTREIGLEELKIRPPKKKEMTTVEASMRLDAVGSAAFGMSRSKMA 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
+ I+ G+VRVNW +T+ +L+ GD+++V GKGR +IGE++ T+K ++ V+L +Y+
Sbjct: 203 SAIAQGNVRVNWKPITQASHSLQEGDLIAVQGKGRAEIGEVSITKKQRYRVQLTRYV 259
>gi|384249277|gb|EIE22759.1| photosystem II S4 domain protein [Coccomyxa subellipsoidea C-169]
Length = 298
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/247 (46%), Positives = 164/247 (66%), Gaps = 13/247 (5%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP---EA 58
A+RA+S + +DF PPV+ ++M A+++LA V A++ GGY QAER R+ +G EA
Sbjct: 53 AQRAASMWTTICTDFHPPPVVADAMNAMKQLAGVAALSFGGYAQAERTRIFLGQEDIIEA 112
Query: 59 LTSDP---------DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 109
L +DP + VAAL + GNF F +H DFLG+ILGTGI R K+GDIIL GE G
Sbjct: 113 LKADPQQVSCKAQAEGVAALRVQGNFMFDAATHRDFLGAILGTGIERSKVGDIILVGETG 172
Query: 110 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 169
AQ LV EL D+ +L +V +V V R+ L L P +T++ +++EASLR+DA+ASA
Sbjct: 173 AQILVAEELLDHFELNLTQVRSVPVVSRRMELAELSVRPAKTETVRSVEASLRLDAVASA 232
Query: 170 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFA 229
GF++SR+K +LI GDVRVNW K + ++ GD++S SGKGRI+I + T+K + A
Sbjct: 233 GFRISRAKAADLIKQGDVRVNWIQ-AKGSSLVKEGDVISCSGKGRIEIISTSLTKKDRHA 291
Query: 230 VELIQYL 236
VE+ +Y+
Sbjct: 292 VEMTRYV 298
>gi|411119486|ref|ZP_11391866.1| photosystem II S4 domain protein [Oscillatoriales cyanobacterium
JSC-12]
gi|410711349|gb|EKQ68856.1| photosystem II S4 domain protein [Oscillatoriales cyanobacterium
JSC-12]
Length = 259
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 156/228 (68%), Gaps = 1/228 (0%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAA 68
EV+ +DFL+PP L E L +V+ VA GGY QAER RL++ E L+ + ++A
Sbjct: 32 EVVCTDFLSPPELAEIQEVFSCLTEVQMVAWGGYLQAERQRLAIARAELPLSVEQVSLSA 91
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L I GNF F P +H DFLG+ILGTGI R+K+GD+++ GE+GAQ +VVPE+ ++LI +L +
Sbjct: 92 LEIAGNFLFDPATHRDFLGAILGTGIVRDKVGDVLVLGERGAQAIVVPEMVEFLIMNLTQ 151
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V +V V I L+ P+ K T+EAS+R+DA+ASAGF +SR+K+V+LI G+VR
Sbjct: 152 VRSVPVKTRAIAFDELKIREPKKKEMTTVEASMRLDAIASAGFGISRNKMVDLIEAGEVR 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
VNW T ++ D++++ GKGR+++GE+ T+K ++ V+L +Y+
Sbjct: 212 VNWKETTSASYVVKAKDLIAIRGKGRVEVGEVAVTKKDRYRVQLTRYV 259
>gi|443475431|ref|ZP_21065381.1| photosystem II S4 domain protein [Pseudanabaena biceps PCC 7429]
gi|443019738|gb|ELS33786.1| photosystem II S4 domain protein [Pseudanabaena biceps PCC 7429]
Length = 258
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 155/231 (67%), Gaps = 3/231 (1%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 63
RA EV+ SDFL+PP + E++ K+ ++ +A GGY QAER RL++ E L DP
Sbjct: 25 RAVQTWEVVCSDFLSPPEITEALQVFGKMTEIHCLAWGGYEQAERQRLAIARSE-LPLDP 83
Query: 64 DIVA--ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
+V+ A+SI GNF F +H DFLG+ILGTGI R+K+GD+ + GEKGAQ +VVPEL +Y
Sbjct: 84 SMVSLTAISIAGNFLFDTATHRDFLGAILGTGIERQKVGDVNVLGEKGAQAIVVPELVEY 143
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
L +V V V I L+ P TK + EASLR+DA+AS GF +SRSK+V+L
Sbjct: 144 LQLHFNQVRTVPVKVNAIAWEELKIRIPVTKELTSTEASLRLDAIASFGFGMSRSKMVDL 203
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
I+ DVRVNW T+++ L++GD++++ GKGR+ IG+I T+K ++ V++
Sbjct: 204 INGEDVRVNWKTISQPNYQLKSGDLIAIRGKGRVTIGDIMITKKERYRVQM 254
>gi|443320974|ref|ZP_21050044.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 73106]
gi|442789300|gb|ELR98963.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 73106]
Length = 259
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 163/238 (68%), Gaps = 3/238 (1%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
++ +A ++ +DFL+P +L E++ L ++ +A GGYPQAER RL +G E +
Sbjct: 23 LSEQAWKTWSIVLTDFLSPTILVEALPLFTDLTELHCLAWGGYPQAERQRLGLGRTE-VP 81
Query: 61 SDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
D ++V A L I GNF F +H DFLG+ILGTGI R+KIGDII+ GE+GAQ +VVPE+
Sbjct: 82 IDTEVVELAVLKIEGNFLFDVATHRDFLGAILGTGIVRDKIGDIIVLGERGAQVIVVPEM 141
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
D+L ++ +V +VSV I + L+ P +TK +T+EAS+R+DA+ASAGF LSRSK+
Sbjct: 142 VDFLCGTVVQVRSVSVQTKPIAVGELKITPAKTKEIQTVEASMRLDAIASAGFGLSRSKM 201
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
IS+GDVRVNW V+ L +GD++S GKGR+++GE+ T+K ++ V+L +YL
Sbjct: 202 AEAISSGDVRVNWKEVSSPSYQLHSGDLISFQGKGRLQVGEVAITKKERYRVQLTRYL 259
>gi|37519960|ref|NP_923337.1| hypothetical protein gll0391 [Gloeobacter violaceus PCC 7421]
gi|35210952|dbj|BAC88332.1| gll0391 [Gloeobacter violaceus PCC 7421]
Length = 262
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 151/226 (66%), Gaps = 1/226 (0%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAAL 69
V+ SDF +PP + E + +L +V A A GGY QAER R++V A+ + +AA+
Sbjct: 36 VVTSDFYSPPEVGECLDVFSRLVEVHAAAWGGYSQAERQRIAVSRDNIAIETAAIPLAAV 95
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
I GNF F SH DFLG+ILGTGI R K+GDI++ G++GAQ LV PEL +L TSL V
Sbjct: 96 DIRGNFLFDAASHRDFLGAILGTGIVRGKVGDILVLGDRGAQTLVAPELVPFLQTSLTSV 155
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V V I L PP+TK ++EASLR+DA+ SAGF LSR+K+V I G+V +
Sbjct: 156 RTVPVQVVPIGFEELRIRPPQTKEITSVEASLRIDAIGSAGFGLSRNKMVESIEAGEVTL 215
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
NW TVT+ ++TGD +++ G+GR+++G +++T+KG++ V++I+Y
Sbjct: 216 NWKTVTQPSKNVQTGDRITLRGRGRLEVGPVDTTKKGRYRVQMIRY 261
>gi|255081170|ref|XP_002507807.1| predicted protein [Micromonas sp. RCC299]
gi|226523083|gb|ACO69065.1| predicted protein [Micromonas sp. RCC299]
Length = 311
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 157/247 (63%), Gaps = 12/247 (4%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A+ AS R ++FL P + ++ + ++++AD +A GGY +AER RL +G E L
Sbjct: 65 AQAASDRWGTEVTEFLDPALAADARVVIDRMADCEARPWGGYDRAERVRLVIGRREVLDG 124
Query: 62 DPD------------IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 109
D D VA L ++GNF F H DFLG+ LG GI R+++GDI++QGE+G
Sbjct: 125 DGDDSFAALTDATNGCVALLQVSGNFMFDAADHRDFLGAALGAGIERDRLGDILVQGERG 184
Query: 110 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 169
AQ L +A +L +++ V V V+ + PL L PPR +F ++E S+R+DA+ASA
Sbjct: 185 AQILATRPMAAFLSSAMTSVRKVPVATSIAPLTDLRVPPPRVDTFASVEKSMRLDAVASA 244
Query: 170 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFA 229
GF++SRSK+ +LI+ G V+VNW K T ++GD++S+ GKGR+++GE+ +T+KG F
Sbjct: 245 GFRMSRSKMSDLIAAGAVKVNWREGAKPKTECKSGDVISLRGKGRVEVGEVTTTKKGSFN 304
Query: 230 VELIQYL 236
V+L +YL
Sbjct: 305 VQLTRYL 311
>gi|422293742|gb|EKU21042.1| rna-binding s4 [Nannochloropsis gaditana CCMP526]
Length = 325
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 155/243 (63%), Gaps = 8/243 (3%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL--------SV 53
A +A S E+ DF PP + L ++AD+ GG+PQAER R+ +V
Sbjct: 83 ADKAVSIWEMQVIDFCRPPEVATMTRVLGRVADLSITCDGGFPQAERQRVFFSRALDYAV 142
Query: 54 GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 113
+A +AA+S+ GNF F +H DFLG++LGTGIAREK+GDI+LQGE+GA +
Sbjct: 143 DEEDARKERGGYLAAISVEGNFIFDRATHRDFLGALLGTGIAREKVGDILLQGERGAHVV 202
Query: 114 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 173
V P++A+Y++ SL V +V V I L L PP TK +++EAS+R+DA+ASAG +
Sbjct: 203 VAPDVAEYVVLSLAAVRSVPVKNKPIALADLGVRPPVTKEMQSVEASMRLDAVASAGMGM 262
Query: 174 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELI 233
SRSKL ++I GDV VNW +T L+ GDIV++ GKGR+++ E+ +T KGKF V++
Sbjct: 263 SRSKLKDMIEGGDVLVNWKEITSANAQLKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMT 322
Query: 234 QYL 236
+++
Sbjct: 323 KFV 325
>gi|308805044|ref|XP_003079834.1| unnamed protein product [Ostreococcus tauri]
gi|116058291|emb|CAL53480.1| unnamed protein product [Ostreococcus tauri]
Length = 306
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 148/239 (61%), Gaps = 6/239 (2%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALE-KLADVKAVAQ-GGYPQAERCRLSVGHPEALTS 61
RA R V ++F+ P + + ++ + D A+ Q GG+ AER R ++ E S
Sbjct: 68 RALERWSVETTEFMDPGAMTSVVSSVRARFGDEVAIEQWGGFSAAERRRATISRSETPAS 127
Query: 62 DPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
D ++ V L ++GNF F +H DFLG+ILGTGI RE++GDI++ GE+GA +V PE+
Sbjct: 128 DEEVRANVKVLRVSGNFMFDAATHRDFLGAILGTGIKRERVGDIVVTGERGADVMVTPEM 187
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
++L T+L V V V + L+ P+T+ +T E+S R+DA+ SAGF++SRSK
Sbjct: 188 CEFLSTALTSVRTVKVEAREVDASELKVPEPKTEEMQTSESSTRLDAIGSAGFRMSRSKF 247
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK-GKFAVELIQYL 236
+ + +GDV+VNW V+K L GD++S GKGR+++ EIN RK G+F V L++++
Sbjct: 248 MAHVDSGDVKVNWKEVSKGRHDLNAGDVISCRGKGRVEVLEINPARKEGRFFVRLLRFV 306
>gi|22299704|ref|NP_682951.1| hypothetical protein tlr2161 [Thermosynechococcus elongatus BP-1]
gi|22295888|dbj|BAC09713.1| tlr2161 [Thermosynechococcus elongatus BP-1]
Length = 243
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 138/223 (61%), Gaps = 1/223 (0%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAAL 69
V+H+ FL P + E++ LE+ ADV +A GGYPQAERCRL++ E L +A
Sbjct: 17 VVHTLFLPPDRVVEALGVLEQRADVHGLAWGGYPQAERCRLAIAPVELPLEGQQPPLALG 76
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
ITGNF F P ++ DF G+I G+ GD+IL GE+GAQ +++PE L L++V
Sbjct: 77 RITGNFLFDPATYSDFEGAIASVGLDEGDYGDVILLGERGAQVILIPEKVSTLQKELKQV 136
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V V+ L PP+ KS T+EASLR+DA+ASAGF +SRSK+ IS G VRV
Sbjct: 137 RTVPVTVDLCDWSELAVAPPQRKSLSTVEASLRLDAVASAGFGVSRSKMSEWISQGLVRV 196
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
NW V + L+ D++++ GKG+++I EI T+K ++ +++
Sbjct: 197 NWQVVQQPRYLLKVNDLIAIRGKGQLRIQEIQLTKKERYRIQM 239
>gi|145348001|ref|XP_001418446.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578675|gb|ABO96739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 303
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 141/240 (58%), Gaps = 5/240 (2%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLSVGHPEAL 59
A R R V +FL P L A+ + +V+ A GG+ AER R ++ +++
Sbjct: 64 AERVRDRWTVETIEFLDPGALHSVENAVRAVCGDEVEVRAWGGFASAERRRATIARADSV 123
Query: 60 TSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
+ D V L + GNF F +H DFLG+ILGTGI REK+GDI++ GE+GA +V PE
Sbjct: 124 DEEEIRDTVRVLRVQGNFMFDAATHRDFLGAILGTGIKREKVGDIVVTGERGADVMVSPE 183
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+A++L T+L V V V + L+ P+ + + E+S R+DAL SAGF++SRSK
Sbjct: 184 MAEFLSTALTSVRTVKVEAREVDASELKVPEPKVEDIFSSESSTRLDALGSAGFRMSRSK 243
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK-GKFAVELIQYL 236
V + +GDV+VNW V K L GD+VS GKGR+++ +I RK G+FA L +Y+
Sbjct: 244 FVAHVESGDVKVNWKEVKKGRYDLSAGDVVSCRGKGRLEVVDIQPARKEGRFACNLRRYV 303
>gi|427711215|ref|YP_007059839.1| photosystem II S4 domain-containing protein [Synechococcus sp. PCC
6312]
gi|427375344|gb|AFY59296.1| photosystem II S4 domain protein [Synechococcus sp. PCC 6312]
Length = 258
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 143/232 (61%), Gaps = 2/232 (0%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
+ +A EV+ +DFL P V E++ AL +L D+ A GGYPQAER R+ + +
Sbjct: 24 SEQAFKTWEVVVTDFLDPLVRLEAIAALNQLTDLHYQAWGGYPQAERQRMVLARTDIPLD 83
Query: 62 DPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+I + +I GNF F P + DF +++ GI ++IGDIIL G++GAQ ++VP L D
Sbjct: 84 QSNIGLELWAIAGNFLFDPPTDTDFHQALIMAGIPTDQIGDIILLGDRGAQVILVPGL-D 142
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+ +++V V V+ L PP+ K+ T+EASLR+DALASAGF +SRSK+V
Sbjct: 143 ISLGQVKQVRTVPVNAQPQAWQELRVRPPQIKTLTTVEASLRLDALASAGFGMSRSKMVE 202
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+I+ G VRVNW + + L+TGD+V++ +G + IG I T+K ++ VEL
Sbjct: 203 MINGGAVRVNWQPINQPSHLLKTGDLVTLKQRGHLTIGSIQVTKKERYRVEL 254
>gi|449017158|dbj|BAM80560.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 340
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 154/251 (61%), Gaps = 16/251 (6%)
Query: 1 MARRASSRREVLHSDF-LTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 59
+A +A+ +V+ +DF L P L ALE LA V + GGY AER +++ +P+
Sbjct: 91 LAIKATKNYQVVATDFFLRPNELHGMKQALESLAFVGVTSSGGYAAAER-QIAAFYPKDF 149
Query: 60 TSDPDI------------VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQG 106
P+ + AL + GNF F SH DFLG+++G +G+ RE+ GDII+ G
Sbjct: 150 APTPEQEQQVATTHCESQLLALELAGNFIFDRASHSDFLGALIGCSGLRRERFGDIIILG 209
Query: 107 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDA 165
++GAQ +V+ A+ + +S++ V +V+V ++ LA LE +PPRTK+ ++EASLR+DA
Sbjct: 210 DRGAQVVVLKNDAETIRSSVKMVRSVTVRTRQLGSLAELEVQPPRTKTLTSVEASLRLDA 269
Query: 166 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
+ SAGF +SR+K+V +I NGDV VNW V + GD ++ G+GR+++ I T +
Sbjct: 270 VGSAGFGMSRTKMVEMIKNGDVHVNWVPVKSASRNVAEGDTITARGRGRLQVISIAITSR 329
Query: 226 GKFAVELIQYL 236
G+F VEL +Y+
Sbjct: 330 GRFRVELKRYI 340
>gi|435853593|ref|YP_007314912.1| photosystem II S4 domain protein [Halobacteroides halobius DSM
5150]
gi|433670004|gb|AGB40819.1| photosystem II S4 domain protein [Halobacteroides halobius DSM
5150]
Length = 261
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 138/231 (59%), Gaps = 15/231 (6%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD---PDIV---- 66
+DFL P L + L ++ D+K + GGY +AER L AL D PD++
Sbjct: 38 TDFLNPRQLYIAKPVLAQIRDLKYLEYGGYNKAERKML------ALVPDYYIPDMIDPPL 91
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
L+ITG F FQ SH DFLG+ILGTGI R+K+GD++L +KG Q ++ ++ D+++ +L
Sbjct: 92 TVLNITGQFKFQQVSHRDFLGAILGTGIKRKKVGDLVLY-KKGCQAIIAEQIKDFIMLNL 150
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
E+V + V I L EP RTK + ASLR+D++AS+GF SRSK+ I G
Sbjct: 151 EQVHQIGVQVEEISTTELRIEPQRTKEIRDTVASLRLDSVASSGFSTSRSKMSKQIEKGS 210
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
V+VNW V + T DI+S+ G+GR++I EI +R+G+ + L +YL
Sbjct: 211 VKVNWKIVDDTSYMVDTDDILSIRGRGRVEIDEILGKSRRGRIKLRLKRYL 261
>gi|225181688|ref|ZP_03735128.1| RNA-binding S4 domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225167669|gb|EEG76480.1| RNA-binding S4 domain protein [Dethiobacter alkaliphilus AHT 1]
Length = 261
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 139/222 (62%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV--AALSI 71
+DFL P + + L DVK+V GGYP+AER RL V +P +D + V A + +
Sbjct: 38 TDFLDPFQQRTADRVLHLFKDVKSVTWGGYPEAERARLLV-YPSQRQADKESVPLAFIEV 96
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
+ +H D+LG++LG G+ REK+GDI+L GE AQ +V PE+ +L+T+ +VG
Sbjct: 97 EAHKA-DGLTHRDYLGAVLGLGLRREKLGDILLIGESKAQLVVHPEILSFLLTNWGEVGK 155
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
SVS I L PPR + KT ASLR+D++ASAGF +SRSKL + +G +++NW
Sbjct: 156 YSVSVKEITADELAPTPPRVREIKTTVASLRLDSVASAGFGMSRSKLSPAVKSGQIKLNW 215
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
+VT T++ GDI+S++G+GR+++ E+ ++KG+ + L
Sbjct: 216 QSVTSASATVKEGDIISLAGRGRVEVAEVRGQSKKGRIQLLL 257
>gi|302391658|ref|YP_003827478.1| RNA-binding S4 domain-containing protein [Acetohalobium arabaticum
DSM 5501]
gi|302203735|gb|ADL12413.1| RNA-binding S4 domain protein [Acetohalobium arabaticum DSM 5501]
Length = 264
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 138/238 (57%), Gaps = 7/238 (2%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV---GHPEA 58
AR A + E ++FL P + L+++ D+K + GG+ +AER R+ + +
Sbjct: 29 AREALQKHEPTFTNFLNPYQRELLTSILDQIYDLKYLLYGGFERAERKRIGLMPDYYMRE 88
Query: 59 LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
+ +P + I+GNF F SH DFLG+ILGTGI RE +GD+I+ +K Q +V E+
Sbjct: 89 IVDNP--LTIFEISGNFNFASVSHRDFLGAILGTGIKREVVGDLIVSSDK-CQVIVAEEI 145
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
DYL+ +L++V NV V I LE EP K K+ ASLR+D++AS+GF SR+K+
Sbjct: 146 KDYLLFNLKRVHNVPVEVEEIDAEKLEVEPEHVKEIKSTVASLRLDSVASSGFSTSRTKM 205
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 235
I G+V++NW T+ DI+S+ G+GR++I + + +RK + + L +Y
Sbjct: 206 AREIEAGNVKLNWKIEDDPAQTVELDDIISIRGRGRVEIDQHLGRSRKDRIKLILKRY 263
>gi|296133619|ref|YP_003640866.1| RNA-binding S4 domain-containing protein [Thermincola potens JR]
gi|296032197|gb|ADG82965.1| RNA-binding S4 domain protein [Thermincola potens JR]
Length = 260
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 136/231 (58%), Gaps = 11/231 (4%)
Query: 12 LHSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT--SDPDIV 66
+ SDFL P + +MA + ++ + + GGY AER R+ + PE L+ P+ +
Sbjct: 35 VFSDFLDPG---QQVMAKKLVSGIYGLTWKFDGGYDSAERKRMII-FPEDLSWGEIPECI 90
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
L + GNF F+ +H DFLG++L TGI REK+GDII+ + G Q +VVPE+ DYL +L
Sbjct: 91 CCLQVAGNFRFRKATHRDFLGAVLNTGIRREKLGDIIVV-DDGCQLIVVPEIKDYLAQNL 149
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
K+ V V T I L TK T +SLR+DA+A AGF +SRSK+V I++
Sbjct: 150 FKIHQVPVKVTEISREELISPADNTKIIDTTVSSLRLDAVAGAGFGISRSKIVKYINSEK 209
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
V+VN+ T+T + GD+VS G GRI I ++ TRKG+ + + +YL
Sbjct: 210 VKVNFETITDADYRINEGDVVSTRGLGRISIEKVKGDTRKGRIGIVIKRYL 260
>gi|298704938|emb|CBJ28441.1| RNA-binding S4 [Ectocarpus siliculosus]
Length = 158
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 104/155 (67%)
Query: 80 CSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI 139
H DFLG+I+ G+ R+ IGDI++QGE+GAQ LV P +A++L SL V +V V I
Sbjct: 2 ADHRDFLGAIVNLGVTRDGIGDILVQGERGAQVLVDPVMAEFLAGSLTSVRSVKVKVRPI 61
Query: 140 PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGT 199
PL L P +TK T+EASLR+D++ASAG +SRSK+ I +G V VNW + T
Sbjct: 62 PLEELAVRPAKTKDVSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAASSGTT 121
Query: 200 TLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 234
+R GDIV+V GKGR++IG+I T+KG++ + + +
Sbjct: 122 NVREGDIVTVRGKGRVEIGDITVTKKGRYKINMCR 156
>gi|251797860|ref|YP_003012591.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. JDR-2]
gi|247545486|gb|ACT02505.1| RNA-binding S4 domain protein [Paenibacillus sp. JDR-2]
Length = 257
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 136/236 (57%), Gaps = 7/236 (2%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA--LTS 61
R++ E+ +DFL P + M + DV+ GGYP+AERCR +G PE L
Sbjct: 26 RSAQLHELKRTDFLDPRQAQILQMLANRNPDVQLRLAGGYPEAERCRAIIG-PEYRYLDD 84
Query: 62 DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
+P ++ L++TG G HGD+LG++LG G+ R++IGDI + E + +V+ E+ADY
Sbjct: 85 EPIGLSVLAVTG--GGSELDHGDYLGALLGLGVKRDRIGDIHVH-EDYSHIIVLDEIADY 141
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
L L +V SV IP L L+ P + AS+R+D +AS +++SR+K+V+
Sbjct: 142 LNVHLRQVHRASVLTEIIPTLKLKPVVPALQEMSFTVASMRLDGIASDVYRISRTKIVDP 201
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
I G RVNW T L+ GD+VS G GR K+ EI+ T+KG+ V++ +++
Sbjct: 202 IRAGRCRVNWKTAENPSEQLKLGDVVSFKGLGRFKVMEIDGMTKKGRIRVKVGKFI 257
>gi|150390561|ref|YP_001320610.1| RNA-binding S4 domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149950423|gb|ABR48951.1| RNA-binding S4 domain protein [Alkaliphilus metalliredigens QYMF]
Length = 262
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 129/227 (56%), Gaps = 3/227 (1%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-V 66
+ EV +++FLTP +K + L ++ A GG+ AER L + SD + +
Sbjct: 33 KHEVKYTNFLTPYEIKHMLAILNTFEEICFFAIGGHEDAERKTLVIFQAYLDPSDIESPI 92
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
AA+ I + F H DFLG+ILG GI REKIGDI+LQ + Q ++ EL DY++ +L
Sbjct: 93 AAIEIQSSTRFNQLMHRDFLGAILGLGIKREKIGDILLQDD-ICQVVITTELRDYVLLNL 151
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
KVGN+SV I L ++ K + ASLR+DA+ SAGFKLSRS+ LI
Sbjct: 152 VKVGNMSVKVREIELEEIKAPDKVYKEIRLNVASLRLDAIVSAGFKLSRSEAHVLIQKQR 211
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
VNW + K + GD++S+ GKGR+ + I +TR G+ +++L
Sbjct: 212 CSVNWEVIDKPSNEVSCGDLISIRGKGRMIVENIEGTTRSGRTSIKL 258
>gi|87301211|ref|ZP_01084052.1| RNA-binding S4 [Synechococcus sp. WH 5701]
gi|87284179|gb|EAQ76132.1| RNA-binding S4 [Synechococcus sp. WH 5701]
Length = 264
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 131/226 (57%), Gaps = 4/226 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDI--VAALS 70
S FL+ +E+M L L+++ A+GG PQAERCRL + + A S P +A L
Sbjct: 39 SGFLSALAWEEAMERLGSLSELHLEAEGGRPQAERCRLLLQRRDLAAGSTPPTAPLAGLE 98
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
++GNF F P GD +L G ++GD+ L+G++GAQ +V P+LA L + +V
Sbjct: 99 VSGNFLFDPAEPGDVRAGLLAAGALDGELGDLWLRGDRGAQVIVDPQLAARLGGTTARVR 158
Query: 131 NVSVSCTRIPLLALEYEP-PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
+V V L L+ P+ + T+EASLR+DA+ASAGF LSRS++ +L+ G RV
Sbjct: 159 SVEVKLEARGLDQLQPPTRPQPRQLATVEASLRLDAVASAGFGLSRSRMADLVRRGAARV 218
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
NW VT L+TGD + + +G + + I T++ ++ +EL ++
Sbjct: 219 NWQPVTTPSRDLKTGDRIQLENRGELTVLSIQPTKRQRWRLELQRH 264
>gi|318042231|ref|ZP_07974187.1| hypothetical protein SCB01_11007 [Synechococcus sp. CB0101]
Length = 263
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 131/235 (55%), Gaps = 8/235 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA-- 58
+A +A E SDF+ + +E+ L L++V A GG+PQAERCRL V +
Sbjct: 23 LAEQALRTWEPCWSDFVDAELKEEAEARLGALSEVDLWADGGWPQAERCRLLVRRADQAD 82
Query: 59 LTSDPDIVA---ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 115
L P +A L ++GNF F P D + G+ +GD+ ++G++GAQ L+
Sbjct: 83 LVDAPAPLAEICGLVVSGNFLFDPAEPADVREGLRQAGLQDSDLGDVWMRGDRGAQALIR 142
Query: 116 PELADYLITSLE-KVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKL 173
E A+ L E +V +V V +PL L++ R K ++EASLR+DA+ASAG L
Sbjct: 143 KE-AEVLADQREAQVRSVPVQLQVVPLEQLQWPASRAPKQLSSVEASLRLDAVASAGLGL 201
Query: 174 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKF 228
SRS++ +LI G VRVNW +T LR GD V + G+G ++I EI T++ ++
Sbjct: 202 SRSRMADLIRQGSVRVNWQVITSPSKELRCGDRVRLDGRGELEILEIQPTKRDRW 256
>gi|158320443|ref|YP_001512950.1| RNA-binding S4 domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158140642|gb|ABW18954.1| RNA-binding S4 domain protein [Alkaliphilus oremlandii OhILAs]
Length = 262
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL----T 60
S + E+ +DFL P + + L + D++ V GGY +AER +++ PE L
Sbjct: 30 VSKKHEIKTTDFLNPQEIVMACEILHTVRDIQYVVSGGYDEAERKLITI-FPEYLEGYGV 88
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
P +A I G F+ +H D+LG+ILG G+ REKIGDII+ E +Q +V L D
Sbjct: 89 EIP--IAVFEIKGTSQFEKLNHRDYLGAILGLGLKREKIGDIIVHNEI-SQVIVHESLKD 145
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLSRSK 177
Y+ +L KVGNVSV + + + PP+ + +K I +SLR+DA+ S +K+SRS+
Sbjct: 146 YIFYNLNKVGNVSVKIKELEISDII--PPKIE-YKEIRGNVSSLRLDAILSLAYKISRSE 202
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
LIS V VNW TK+ + G+I+SV GKGR+KI I K
Sbjct: 203 AQELISKERVSVNWKNTTKSAQDVTEGNIISVKGKGRVKIAAIEGKTK 250
>gi|87123642|ref|ZP_01079492.1| hypothetical protein RS9917_08541 [Synechococcus sp. RS9917]
gi|86168211|gb|EAQ69468.1| hypothetical protein RS9917_08541 [Synechococcus sp. RS9917]
Length = 264
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 7/226 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH------PEALTSDPDIVA 67
S FL P+ +E+ L ++ +GGYP AERCRL P + T +P +
Sbjct: 36 SPFLEAPLQEEAFDRFSSLTELSWQREGGYPGAERCRLLCQRRDPDLDPSSETQEPAPIV 95
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L++ GNF F P D ++ G A E++GD+ ++G++GAQ L PE AD L
Sbjct: 96 GLTVEGNFLFDPIVPADIRRALAPLGAAPEQLGDVWIRGDRGAQLLCTPEAADRLNGRKG 155
Query: 128 KVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
++ +V + C +P+ L+ R K F ++EAS R+DA+ASAGF LSRSK+ I +G
Sbjct: 156 RLRDVEIHCETVPIDGLQLPVRRAIKRFSSVEASCRLDAIASAGFGLSRSKVSQEIRSGQ 215
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+R+NW + + L+ GD + + +G +++ + T++ ++ V +
Sbjct: 216 LRLNWEPIRQASRELKVGDRLQLQNRGSVEVLSLTLTKRERWRVAM 261
>gi|78043754|ref|YP_360858.1| S4 domain-containing protein [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995869|gb|ABB14768.1| S4 domain protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 246
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 128/233 (54%), Gaps = 3/233 (1%)
Query: 6 SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI 65
+++ +++ +DFL P + L +V GGYP AE+ R + D ++
Sbjct: 15 AAKGQIVLTDFLDPAAASLTRDLLRNYPEVNYKVDGGYPNAEKVRFAFYPIYVFPEDVEL 74
Query: 66 -VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
+ + ITGNF FQ +H DFLG+ILGTGI REK+GD+IL G Q +V +L YLI
Sbjct: 75 NLGFIEITGNFKFQAVTHRDFLGAILGTGIKREKVGDLILI-PNGCQVVVDRDLVPYLIQ 133
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
L+KV V V+ I L +T+ SLR+D++ ++GF +SRS++V I
Sbjct: 134 QLDKVHRVGVTVKEIVREELLLPEAKTREVVAFVKSLRLDSVGASGFGISRSQMVKEIEG 193
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK-GKFAVELIQYL 236
VRVNW K + GD++S+ G+GR+++ EI K G+ V L +YL
Sbjct: 194 QKVRVNWKLQVKPSYEVAPGDVISLRGRGRVEVLEIAGVSKSGRNKVILRRYL 246
>gi|33240887|ref|NP_875829.1| RNA-binding protein [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33238416|gb|AAQ00482.1| RNA-binding protein, contains S4-like domain [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 262
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 126/227 (55%), Gaps = 4/227 (1%)
Query: 12 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDI-VAA 68
+ + FL+ PV +E +++AD+ + GGYP AER R L E +D ++ + A
Sbjct: 35 IWTSFLSAPVQEEIKNVFKEIADISYSSNGGYPNAERKRILLQRQQNETFLNDENVPIKA 94
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
+ I GNF F DF SI TG+ E+IGD+ + G++GAQ + PE L +
Sbjct: 95 IKIEGNFLFDRTEPEDFRQSIAETGVKAEEIGDLWITGDRGAQAMCTPEALKLLQNNQGF 154
Query: 129 VGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+ +V + I L L R K ++EAS R+DA+ASAGF +SR+K+++ I G V
Sbjct: 155 IRDVEIKYKSIDLTDLRIPFQRNPKKITSVEASKRLDAIASAGFGISRAKIISQIREGRV 214
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 234
R+NW T+ L GD V + GKG I++ + T+K ++ VELI+
Sbjct: 215 RLNWHTINNASRALTIGDRVDLEGKGSIEVLNLEITKKDRWRVELIR 261
>gi|412992974|emb|CCO16507.1| RNA-binding S4 [Bathycoccus prasinos]
Length = 340
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 138/268 (51%), Gaps = 38/268 (14%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVGH--- 55
A+RA +DF +PP+ A++K V GG+ AE+ R+ +
Sbjct: 77 QAKRAEKVWSCEITDFYSPPLCDWIEAAVKKNFGEAIVCNRFGGFSGAEQQRVLLARRDN 136
Query: 56 ----------PEALTSDPD---------IVAALSITGNFGFQPCSHGDFLGSILGTGIAR 96
E ++ D +A ++I+G F F P SH DFLG++L G+ R
Sbjct: 137 SEELFELAKKDEFFANEEDEGEVDTNNCAIACVNISGKFAFDPASHPDFLGAVLNAGVKR 196
Query: 97 EKIGDIILQG--EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALE-------YE 147
EKIGDI++ E GA+ L P +A +L +LE V V V+ PL LE E
Sbjct: 197 EKIGDILVNNSSEGGAKVLATPAIAVFLTRALESVRTVKVTVELFPLSELEGAQGAQVQE 256
Query: 148 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 207
P RT EASLR+DA+ASAGF+ +RSK+ I G+V++N+ K T+ GD++
Sbjct: 257 PVRT-----YEASLRLDAVASAGFRCARSKMGEDIVKGNVKLNYNVCEKKNATVGQGDMI 311
Query: 208 SVSGKGRIKIGEINSTRKGKFAVELIQY 235
S G+GR+++ EI + ++ +EL++Y
Sbjct: 312 SCRGRGRVEVKEILEQQNDRYRIELVRY 339
>gi|333978627|ref|YP_004516572.1| RNA-binding S4 domain-containing protein [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333822108|gb|AEG14771.1| RNA-binding S4 domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length = 262
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 139/228 (60%), Gaps = 9/228 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD----IVAAL 69
+DFL P +MALE++ D+ A + GGYP AER R+ + +P+ L DP +A L
Sbjct: 39 TDFLDPYHAGLVLMALERVPDLAARSDGGYPGAERVRILI-YPDYL--DPREEDWQLAFL 95
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
SI G+F Q SH DFLG++L G+ REKIGDI+L ++ AQ +V E+A ++ + L +V
Sbjct: 96 SIQGSFEEQEPSHRDFLGALLALGLRREKIGDILLHNDQ-AQVVVAGEIAPFIQSQLARV 154
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
G +SV+ RI L P R + K SLR+D +A+AGF SR+++ I+ V +
Sbjct: 155 GRISVTVHRISREQLCSPPRRVREIKATVPSLRLDVVAAAGFGTSRTRMAREITAQRVSL 214
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
NW ++ T+R GDI+S G+GR+++ + +T+ G+ A+ L +Y+
Sbjct: 215 NWQVCSELSHTVREGDIISARGRGRVQVTRVTGTTKSGRLALILHRYV 262
>gi|385799637|ref|YP_005836041.1| RNA-binding S4 domain-containing protein [Halanaerobium praevalens
DSM 2228]
gi|309389001|gb|ADO76881.1| RNA-binding S4 domain protein [Halanaerobium praevalens DSM 2228]
Length = 262
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 8/208 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA----L 69
SDFL P +K ++ +E+LAD+ +GGY AER RL V PE L PD+V
Sbjct: 39 SDFLNPYQMKIAIPLVEQLADINFKKEGGYQAAERKRLVV-FPEYLF--PDLVEKQIKIY 95
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ GNF FQ SH DFLG+++G G+ R+ IGD+++ + AQ +V E+ D + LEKV
Sbjct: 96 QLAGNFAFQKLSHRDFLGALMGLGLKRKLIGDLLVHTD-FAQIIVAAEIEDIIELKLEKV 154
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V + I L K T AS+R+DA+AS+GF SR+K+ I + V++
Sbjct: 155 HQVPIKIKEIDESQLVSPTRYEKEILTTVASMRLDAVASSGFGDSRTKMARDIESEKVKL 214
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
NW T + GD++SV G+GR+K+
Sbjct: 215 NWKVETDPAAEVEIGDLISVRGRGRVKV 242
>gi|113953560|ref|YP_731456.1| S4 domain-containing protein [Synechococcus sp. CC9311]
gi|113880911|gb|ABI45869.1| S4 domain protein [Synechococcus sp. CC9311]
Length = 259
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 7/225 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI---VAALS 70
S FL+ +L+++ LE LA++K GGYP AER RL + H A + DP+ +A L+
Sbjct: 37 SPFLSALMLEDANQ-LESLAELKISRDGGYPGAERKRLLIQH--AASPDPEPHCPLAGLN 93
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ GNF F P S + ++ G+A E +GD+ ++G++GAQ + PE A L +
Sbjct: 94 VEGNFLFDPTSPDEMRLALHRIGVADESLGDLWIRGDRGAQAICTPEAAAVLQGQQGSLR 153
Query: 131 NVSVSCTRIPLLALEYEPPR-TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V ++C +PL L++ R + ++EAS R+DA+ASAGF +SRSK+V I G +R+
Sbjct: 154 EVIITCESLPLEGLQWPVQRVARRLSSVEASCRLDAIASAGFGISRSKVVKQIKEGRLRL 213
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 234
NW V L+ GD + + +G I++ I T++ ++ V++++
Sbjct: 214 NWEPVRLASRDLKVGDRLQLQDRGSIEVMNIERTKRERWRVDILR 258
>gi|134298583|ref|YP_001112079.1| RNA-binding S4 domain-containing protein [Desulfotomaculum reducens
MI-1]
gi|134051283|gb|ABO49254.1| RNA-binding S4 domain protein [Desulfotomaculum reducens MI-1]
Length = 255
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 127/212 (59%), Gaps = 7/212 (3%)
Query: 29 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTS---DPDIVAALSITGNFGFQPCSHGDF 85
LE++ D+ + GGY +ER R +V P+ L D +I L++ GNF +H DF
Sbjct: 47 LERIQDIDFASYGGYDLSERVR-TVIFPDYLEGEVFDYEI-TLLAVEGNFKMVKVNHRDF 104
Query: 86 LGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALE 145
LGS+LG GI RE +GD+I+ +KG Q +V E+A YL+ +L KV V V I L+
Sbjct: 105 LGSLLGLGIKREMVGDLIVS-DKGCQVMVAREIAPYLMANLTKVHKVRVEVREICPEELK 163
Query: 146 YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD 205
+ K KT ASLR+D +A+AGF SRS++ I + +NW + + ++++GD
Sbjct: 164 LPELKVKEIKTTVASLRLDTVAAAGFGTSRSRIAREIQAERLNLNWHSCSDVAASVKSGD 223
Query: 206 IVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
++S+ G+GR++I E+ +T+ G+ ++ L +YL
Sbjct: 224 MLSIRGRGRVEIAEVKGNTKSGRISIVLKRYL 255
>gi|20808026|ref|NP_623197.1| hypothetical protein TTE1597 [Thermoanaerobacter tengcongensis MB4]
gi|20516604|gb|AAM24801.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 248
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 138/233 (59%), Gaps = 18/233 (7%)
Query: 13 HSDFLTPPVLKESMMALEKLA------DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI- 65
++DFLT K+ EKLA VK + +GGYP AER ++++ +P+ LT +
Sbjct: 25 YTDFLTLSEQKQ----FEKLALKYKSEGVKYLLEGGYPSAER-KIAIVYPDFLTFREEEL 79
Query: 66 -VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
+ AL + G F SH + LGSILG GI REK+GDII++ E ++ E+ D+L+
Sbjct: 80 PIVALRVEGKNRF---SHREVLGSILGLGIKREKVGDIIVK-ESKCDVILKEEMRDFLLF 135
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+L K+G SV I L + + K + ASLRVD++A++GF +SR+K LI +
Sbjct: 136 NLTKIGRESVEVHEIELSDVMQPEIKYKDIFSTVASLRVDSVAASGFGISRTKASELIKS 195
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
G +RVNW V + GD++S+ G GRIK+ EI +T+KG+ ++ +++YL
Sbjct: 196 GLLRVNWEAVEDPSFHVGEGDVISLRGFGRIKLQEIKGNTKKGRISIHILRYL 248
>gi|313891380|ref|ZP_07824996.1| S4 domain protein [Dialister microaerophilus UPII 345-E]
gi|313120155|gb|EFR43331.1| S4 domain protein [Dialister microaerophilus UPII 345-E]
Length = 263
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 125/215 (58%), Gaps = 2/215 (0%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
S F++P ++ + V + GGY +AER +++ + ++ LS+T
Sbjct: 41 SSFMSPLSIQIGQTIAAHMKTVTSSYNGGYHEAERVKVAFQSNDYGGKVNYEISLLSVTW 100
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
+ F+ H D LGS++G GI RE +GDI++QG + AQ LV ++++Y+ ++ KV V
Sbjct: 101 DDRFRLIGHRDVLGSLMGLGIEREVLGDILMQGTQ-AQILVDGKMSEYIKSNFTKVAMVP 159
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V IPL L+ + K + + AS+R+DA+ +AGF LSR+K+V +I V+VNW +
Sbjct: 160 VQVEEIPLEELKVPEQKAKEIRAMVASMRLDAVGAAGFGLSRTKMVQMIDGDRVQVNWQS 219
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
T++ DI+S+ GKGRI+I EI +RKG+
Sbjct: 220 AKSVSQTVKVKDIISIRGKGRIEIEEITGKSRKGR 254
>gi|329121439|ref|ZP_08250063.1| S4 domain protein [Dialister micraerophilus DSM 19965]
gi|327469354|gb|EGF14824.1| S4 domain protein [Dialister micraerophilus DSM 19965]
Length = 263
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 125/215 (58%), Gaps = 2/215 (0%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
S F++P ++ + V + GGY +AER +++ + ++ LS+T
Sbjct: 41 SSFMSPLSIQIGQTIAAHMKTVTSSYNGGYHEAERVKVAFQSNDYGGKVNYEISLLSVTW 100
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
+ F+ H D LGS++G GI RE +GDI++QG + AQ LV ++++Y+ ++ KV V
Sbjct: 101 DDRFRLIGHRDVLGSLMGLGIEREVLGDILMQGAQ-AQILVDGKMSEYIKSNFTKVAMVP 159
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V IPL L+ + K + + AS+R+DA+ +AGF LSR+K+V +I V+VNW +
Sbjct: 160 VQVEEIPLEELKVPEQKAKEIRAMVASMRLDAVGAAGFGLSRTKMVQMIDGDRVQVNWQS 219
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
T++ DI+S+ GKGRI+I EI +RKG+
Sbjct: 220 AKSVSQTVKVKDIISIRGKGRIEIEEITGKSRKGR 254
>gi|33863700|ref|NP_895260.1| hypothetical protein PMT1433 [Prochlorococcus marinus str. MIT
9313]
gi|33635283|emb|CAE21608.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 263
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 5/227 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL----SVGHPEALTSDPDIVAAL 69
S F++ P+ +E++ L D+ A GG+P AER RL S H S + L
Sbjct: 37 SAFVSAPLREEALHRFSTLTDLHWHADGGHPGAERQRLCCWRSEDHHHPTPSQAAPIHGL 96
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ GNF F S D ++ E++GD+ ++G++GAQ L PELA L +V
Sbjct: 97 LLHGNFLFDSPSPTDLRQALEAIDAQPEQLGDLWIRGDRGAQALCTPELAVNLDGRSSRV 156
Query: 130 GNVSVSCTRIPLLALEYEPPR-TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V ++C + + L+ R T+ ++EAS R+DA+ASAGF LSR+K+VN I G +R
Sbjct: 157 REVEITCEAVAVAQLQPPAHRLTRRLNSVEASCRIDAIASAGFGLSRAKVVNQIKQGHLR 216
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
+NW V + L GD + + G+G +K+ + T++ ++ VE++++
Sbjct: 217 LNWEPVRQTSRELVVGDRLQLQGRGTLKVLALEMTKRQRWRVEMLRH 263
>gi|323702137|ref|ZP_08113804.1| RNA-binding S4 domain protein [Desulfotomaculum nigrificans DSM
574]
gi|333924457|ref|YP_004498037.1| RNA-binding S4 domain-containing protein [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323532824|gb|EGB22696.1| RNA-binding S4 domain protein [Desulfotomaculum nigrificans DSM
574]
gi|333750018|gb|AEF95125.1| RNA-binding S4 domain protein [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 263
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 130/226 (57%), Gaps = 5/226 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSI 71
++F P + LE++ D+ GGYP AER R+++ P+ L SD + + L++
Sbjct: 40 TNFYDPYHTGLIISMLERIPDLDFATGGGYPAAERVRVAI-FPDYLDASDINFDLMLLAV 98
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
GNF +H DFLGSILG GI RE IGD+I+ EKG Q + E+A YL+T+L KV
Sbjct: 99 EGNFKMVKVTHRDFLGSILGLGIKREMIGDVIVT-EKGCQVVAAREVASYLMTNLTKVHR 157
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V V+ I + K K+ ASLR+DA+A+ GF SR+++ I+ + +NW
Sbjct: 158 VGVAVREIAPEEWQMPEVTVKEIKSTVASLRLDAVAAVGFGTSRTRIAREITAERLNLNW 217
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
+ ++ GDI+S+ G+GR+++ E+ +T+ G+ + + ++L
Sbjct: 218 HPCSDVSAPVKPGDILSIRGRGRVEVAEVKENTKSGRIGIVIKRFL 263
>gi|304404028|ref|ZP_07385690.1| RNA-binding S4 domain protein [Paenibacillus curdlanolyticus YK9]
gi|304347006|gb|EFM12838.1| RNA-binding S4 domain protein [Paenibacillus curdlanolyticus YK9]
Length = 262
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 126/236 (53%), Gaps = 4/236 (1%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD- 62
R S R E +D+L P + + +V GGY +AER R + A+ D
Sbjct: 28 RCSERHEWKRTDYLDPRQAEIVRALASRNGEVAIRFDGGYEEAERQRAVIAPDYAVLDDE 87
Query: 63 PDIVAALSITGNF-GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
P V A+++T + G HGD+LG++LG G+ RE IGDI + E G +V E+ADY
Sbjct: 88 PMGVQAIAVTADSQGHLDLDHGDYLGALLGLGVKRELIGDIHVH-EDGCHCMVTEEIADY 146
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
+ L +V V V IPL AL + + ASLR+D +AS ++LSR+K+V+
Sbjct: 147 VNIHLRQVHRVHVLTELIPLSALRVVKSKLEEMSLSVASLRLDGVASDVYRLSRAKIVDP 206
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
I G RVNW L+ GD+VS+ G GR K+ E+ T+KG+F V + +Y+
Sbjct: 207 IRAGRCRVNWKAEENPSALLKAGDVVSMKGLGRFKVLEVEGVTKKGRFRVSIGKYI 262
>gi|421860332|ref|ZP_16292463.1| uncharacterized conserved protein [Paenibacillus popilliae ATCC
14706]
gi|410830080|dbj|GAC42900.1| uncharacterized conserved protein [Paenibacillus popilliae ATCC
14706]
Length = 262
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 125/233 (53%), Gaps = 4/233 (1%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
RRAS EV +DFL P + + + DV+ GG+ QAER R V
Sbjct: 25 WVRRASEGHEVKRTDFLDPRQAYITATLVNRCRDVQLRLDGGFAQAERKRALVAPDYVYA 84
Query: 61 SDPDI-VAALSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
D+ ++ L IT + + HGDFLG++LG GI REKIGDI + ++ LV E+
Sbjct: 85 EGEDVGISVLQITAPDRKWDELEHGDFLGALLGLGIKREKIGDIHISTDR-CHVLVTEEM 143
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
A ++ T L +V VSV +PL L+ K+ K ASLR+D +AS F+LSR+K+
Sbjct: 144 APFVNTHLRQVHRVSVLTDILPLSELQAVEAEMKTAKLSVASLRLDGMASDVFRLSRTKI 203
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
V I G ++NW LR GD+VS+ G GR K+ ++ T++G++ V
Sbjct: 204 VAPIRAGRCKINWKVEENPSVLLRAGDVVSLQGCGRFKVIDVEGLTKRGRYWV 256
>gi|116073646|ref|ZP_01470908.1| RNA-binding S4 [Synechococcus sp. RS9916]
gi|116068951|gb|EAU74703.1| RNA-binding S4 [Synechococcus sp. RS9916]
Length = 263
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 5/224 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT----SDPDIVAAL 69
S F++ P+ ++++ L L +++ A GG P+AER RL + E T P V L
Sbjct: 37 SCFVSAPLREDAVQRLAVLTELQIHADGGRPEAERQRLLISRCEGGTVPQEEHPLPVMGL 96
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ GNF F P D +IL GI +GD+ ++G++GAQ L PE A L +V
Sbjct: 97 EVEGNFLFDPVDPHDMRAAILELGIEAGHLGDLWIRGDRGAQLLCTPEAAVALHGRSGRV 156
Query: 130 GNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
+V + P+ +L+ R K F ++EAS R+DA+ASAGF LSR+K+V+ I +G +R
Sbjct: 157 RDVDIQLEERPVASLQLPQSRVPKRFASVEASCRLDAIASAGFGLSRAKVVDQIRSGRLR 216
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+NW +V + LR GD + + +G +++ + T+K ++ V +
Sbjct: 217 LNWQSVRQASKDLRVGDRLQLQDRGSVEVLALERTKKDRWRVHM 260
>gi|352095856|ref|ZP_08956803.1| photosystem II S4 domain protein [Synechococcus sp. WH 8016]
gi|351677212|gb|EHA60361.1| photosystem II S4 domain protein [Synechococcus sp. WH 8016]
Length = 242
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 129/224 (57%), Gaps = 3/224 (1%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSI 71
S FL+ +L+++ L LA++K GGYP AER RL + H + +P +A L++
Sbjct: 19 WSPFLSALMLEDANQ-LGALAELKISRDGGYPGAERKRLLIQHATSPEPEPPCPLAGLNV 77
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
GNF F P S + ++ G G+ +GD+ ++G++GAQ + PE A L V
Sbjct: 78 EGNFLFDPTSPDEMRLALQGIGVDEAALGDLWIRGDRGAQAICTPEAAALLQGQRGSVRE 137
Query: 132 VSVSCTRIPLLALEYEPPR-TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V ++C PL AL++ R + ++EAS R+DA+ASAGF +SRSK+V I +G +R+N
Sbjct: 138 VMIACESWPLEALQWPVQRVARRLSSVEASCRLDAIASAGFGISRSKVVKQIKDGRLRLN 197
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 234
W V L+ GD + + +G I++ I T++ ++ V++++
Sbjct: 198 WEPVRLASRDLKVGDRLQLQERGSIEVMNIERTKRERWRVDILR 241
>gi|124022232|ref|YP_001016539.1| S4-like domain-containing protein [Prochlorococcus marinus str. MIT
9303]
gi|123962518|gb|ABM77274.1| Uncharacterized conserved protein, contains S4-like domain
[Prochlorococcus marinus str. MIT 9303]
Length = 295
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 126/229 (55%), Gaps = 9/229 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG------HPEALTSDPDIVA 67
S F++ P+ ++++ L D+ A GG+P AER RL HP + P +
Sbjct: 69 SAFVSAPLREQALHRFATLTDLHWHADGGHPGAERQRLCCSRCEDHHHPTPSQAAP--IH 126
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L + GNF F S D ++ E++GD+ ++G++GAQ L PELA L
Sbjct: 127 GLLLHGNFLFDSPSPTDLRQALEAIDTRPEQLGDLWIRGDRGAQALCTPELAVNLDGRSS 186
Query: 128 KVGNVSVSCTRIPLLALEYEPPR-TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
KV V ++C + + L+ R T+ ++EAS R+DA+ASAGF LSR+K+VN I G
Sbjct: 187 KVREVEITCEAVAVTQLQPPAHRLTRRLNSVEASCRIDAIASAGFGLSRAKVVNQIKQGH 246
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
+R+NW V + L GD + + G+G +K+ + T++ ++ VE++++
Sbjct: 247 LRLNWEPVRQTSRELVVGDRLQLQGRGTLKVLALEMTKRQRWRVEMLRH 295
>gi|116071266|ref|ZP_01468535.1| RNA-binding S4 [Synechococcus sp. BL107]
gi|116066671|gb|EAU72428.1| RNA-binding S4 [Synechococcus sp. BL107]
Length = 261
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 5/223 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVA---ALS 70
S FL + +E++ L L+++ GGYP AERCRL + H + D A L
Sbjct: 37 SPFLGARLQEEALARLNNLSEIGWHRDGGYPGAERCRL-LCHRRDQMGEADACAPAYGLL 95
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I GNF F P S D ++ G A ++IGD+ ++G++G Q L PE A L +V
Sbjct: 96 IEGNFLFDPLSPQDIRNALQELGAAPDQIGDLWVRGDRGGQGLCTPESAAQLHEQCGRVR 155
Query: 131 NVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
+V + C + + AL RT + +T+EAS R+DA+ASAGF LSR+K+V I G +R+
Sbjct: 156 DVDIRCEALAIEALHLPAQRTPRILQTVEASCRIDAIASAGFGLSRAKIVGHIKAGRLRM 215
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
NW V + L GD + + +G +++ + T++ ++ VEL
Sbjct: 216 NWHDVRQASRELGVGDRLQLQDRGALEVLSLTRTKRERWRVEL 258
>gi|427413804|ref|ZP_18903995.1| hypothetical protein HMPREF9282_01402 [Veillonella ratti
ACS-216-V-Col6b]
gi|425715127|gb|EKU78121.1| hypothetical protein HMPREF9282_01402 [Veillonella ratti
ACS-216-V-Col6b]
Length = 261
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 136/227 (59%), Gaps = 8/227 (3%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 70
++F++P V+ +++ A L +K GGY AER R++ + + D+ + AL
Sbjct: 39 TEFMSPAGLVIADAIKA--NLPQLKVEFGGGYEGAERIRVAFVEAD-FQGNVDLGIKALK 95
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
++ + F+ +H D LGS++G GI R GDII+Q GAQ +V +ADY+ + K+
Sbjct: 96 VSWDPRFRLLTHRDVLGSLMGLGIERTNFGDIIMQ-TGGAQLIVDAAMADYVKQNFTKIA 154
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
VSVS + + ++ + + K +T ASLR+DA+AS+GF +SR+K+V+ I+ G V+VN
Sbjct: 155 MVSVSVEDMDISEIQPKEEKIKEIRTTVASLRLDAVASSGFSVSRTKVVSSINAGLVQVN 214
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVELIQYL 236
W ++ GDI+S+ G+GR+KI EI T RKG+ V L +++
Sbjct: 215 WQPAKGPAQEVKEGDIISLRGRGRMKIEEITGTSRKGRIGVYLKRFM 261
>gi|254430233|ref|ZP_05043936.1| photosystem II S4 domain protein [Cyanobium sp. PCC 7001]
gi|197624686|gb|EDY37245.1| photosystem II S4 domain protein [Cyanobium sp. PCC 7001]
Length = 261
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 132/223 (59%), Gaps = 8/223 (3%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGN 74
FL VL+E+M L +LA+++ A GG+ AERCRL + EA L +P L + +
Sbjct: 38 FLEGAVLEEAMARLGQLAELELRAAGGHAGAERCRLLLTRREAGLDPEPLDTGLLGLLLS 97
Query: 75 FG--FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F P +F +++ G A IGD+ L+G++GAQ +VV + A+ V +V
Sbjct: 98 GNFLFDPAEPDEFRSALIQQGWADGAIGDVWLRGDRGAQAIVVAKAAEPTAALTLTVRSV 157
Query: 133 SVSCTRIPLLALEYEPP---RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V+ +PL L+ PP + + T+EAS R+DA+ASAGF +SR+++V LI +G VR+
Sbjct: 158 PVTGELVPLALLQ--PPARRQPRQLHTVEASTRLDAVASAGFGISRNRMVTLIRDGAVRL 215
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
NW ++ G L+ GD V +SG+G +++ I +T++ ++ +EL
Sbjct: 216 NWVVASRPGQELQAGDRVQLSGRGELEVRAITATKRERWRIEL 258
>gi|342214853|ref|ZP_08707524.1| S4 domain protein [Veillonella sp. oral taxon 780 str. F0422]
gi|341590384|gb|EGS33627.1| S4 domain protein [Veillonella sp. oral taxon 780 str. F0422]
Length = 261
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 133/237 (56%), Gaps = 2/237 (0%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A + + R +DF++P L + + ++ GGY AER R++ P
Sbjct: 26 LAEQVQAGRPYRVTDFMSPAGLVIADAVKANFGGINIISSGGYEGAERLRVAFVDPHFQG 85
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ +A L ++ + F+ +H D LGS++G GI R GDII+ GAQ +V + D
Sbjct: 86 TVDLQIAVLKVSWDPRFRLLTHRDVLGSLMGLGIDRTHFGDIIVT-SGGAQVIVDATITD 144
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
++I + K+ V+V+ +R+ L L+ + + K +T AS+R+D++AS+GF SR+K+V
Sbjct: 145 FVIQNFTKIAMVTVTVSRMELSELQPKEEKIKEVRTTVASMRLDSIASSGFSTSRTKVVE 204
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVELIQYL 236
I G V+VNW + ++ GDI+S+ G+GR++I I T +KG+ V L +++
Sbjct: 205 AIKAGLVQVNWQSAKGPAQEVKEGDIISLRGRGRMQIESITGTSKKGRIGVHLKRFM 261
>gi|260436697|ref|ZP_05790667.1| photosystem II S4 domain protein [Synechococcus sp. WH 8109]
gi|260414571|gb|EEX07867.1| photosystem II S4 domain protein [Synechococcus sp. WH 8109]
Length = 258
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 123/220 (55%), Gaps = 1/220 (0%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
S FL+ P+ +E++ L L+++ ++ GGYP AER RL + L I G
Sbjct: 36 SPFLSAPLREEALARLGNLSELTWISDGGYPDAERQRLLCHRRDDSPDSGAPTQGLLIEG 95
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
NF F P S D ++ G+ +KIGD+ ++G++G Q + P A+ L L V V
Sbjct: 96 NFLFDPLSPDDLREALQLMGVNADKIGDLWVRGDRGGQGVCTPSAAEALHGRLGAVRKVE 155
Query: 134 VSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+ C +P+ L+ R+ ++ +T+EAS R+DA+ASAGF LSR+K+V + G +R+NW
Sbjct: 156 IRCESLPIEQLQQPVKRSVRTLQTVEASCRLDAIASAGFGLSRAKIVTHVKAGRLRLNWG 215
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
V + L GD + + +G +++ + T++ ++ VEL
Sbjct: 216 NVRQASRELVVGDRLQLQDRGSVEVLSLTRTKRERWRVEL 255
>gi|345017880|ref|YP_004820233.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344033223|gb|AEM78949.1| RNA-binding S4 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 248
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 139/232 (59%), Gaps = 9/232 (3%)
Query: 9 REVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 66
+ V ++DFL+ K E + + D+ GGYP AER ++++ +P+ L + +
Sbjct: 22 KRVKYTDFLSLSEQKIFEKTILKYRQQDINYNLDGGYPLAER-KIAIIYPDFLQPEDTPI 80
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
A+ I GNF SH D LGS+LG GI R+KIGDII++ +K L+ ++ Y++ +L
Sbjct: 81 CAVRIEGNFS--KLSHRDVLGSLLGLGIKRQKIGDIIVKEDK-CDILLHKDVESYVLMNL 137
Query: 127 EKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
KVG V I L LE E F T+ ASLRVD++A+AGF +SR+K LI++G
Sbjct: 138 FKVGKEKVRVNSIDLKDVLEPEIKYKDIFSTV-ASLRVDSVAAAGFGISRTKASELINSG 196
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
+++NW + ++ GD++S+ G GRI++ E+ +T+KG+ +V +++++
Sbjct: 197 LLQINWEYTEDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRVSVHILRFI 248
>gi|78184102|ref|YP_376537.1| RNA-binding S4 [Synechococcus sp. CC9902]
gi|78168396|gb|ABB25493.1| RNA-binding S4 [Synechococcus sp. CC9902]
Length = 261
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 5/223 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVA---ALS 70
S FL + +E++ L L+++ GGYP AERCR + + D D A L
Sbjct: 37 SPFLDARLQEEALERLSNLSEIGWHRDGGYPGAERCRFLCQRRDPI-GDADTCAPVQGLL 95
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I GNF F P S D ++ G A ++IGD+ ++G++G Q L PE A L +V
Sbjct: 96 IEGNFLFDPLSPEDIRNALQELGAAPDQIGDLWVRGDRGGQGLCTPESAARLHEQRGRVR 155
Query: 131 NVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
+V + C +P+ AL RT + +T+EAS R+DA+ASAGF LSR+K+V I G +RV
Sbjct: 156 DVEIRCEALPIEALHLPAQRTPRILQTVEASCRIDAIASAGFGLSRAKIVGHIKAGRLRV 215
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
NW V + GD + + +G +++ + T++ ++ VEL
Sbjct: 216 NWHDVRLASRDVGVGDRLQLQDRGALEVLSLTRTKRERWRVEL 258
>gi|323140386|ref|ZP_08075316.1| S4 domain protein [Phascolarctobacterium succinatutens YIT 12067]
gi|322415142|gb|EFY05931.1| S4 domain protein [Phascolarctobacterium succinatutens YIT 12067]
Length = 261
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 131/238 (55%), Gaps = 4/238 (1%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A A+ R+ S+FL P + + +V+ + GG+ AER + + +
Sbjct: 26 LAEGANKSRKFRVSEFLDPHAYNVAEIIAANYENVRLESDGGFSNAERVKAAF-VADDFY 84
Query: 61 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
PD +A + + SH D LG+ +GTG RE +GDI+ E GAQF+V L
Sbjct: 85 GQPDFGMAYFLAAWDKRYYDLSHRDILGAFMGTGCKREALGDIVFVPE-GAQFVVEKSLV 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+YL +L ++G+ V+ T IP L ++ + K A LR+DA+A+AG+ +SRS++
Sbjct: 144 NYLTGNLTQIGSAPVTLTEIPREELLHKEEKVKLINATVADLRLDAVAAAGYGVSRSRMA 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
+ I + +V+VNW K + GD++S G+GR++I EI +T+KG+ +V L +Y+
Sbjct: 204 DEIKSLNVKVNWKEAKKAAQPVNEGDVISFRGRGRVEIEEIRGTTKKGRISVTLKRYI 261
>gi|297544856|ref|YP_003677158.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842631|gb|ADH61147.1| RNA-binding S4 domain protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 248
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 137/231 (59%), Gaps = 7/231 (3%)
Query: 9 REVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 66
+ V ++DFL+P K E + + D+ +GGYP AER ++++ + + L + +
Sbjct: 22 KRVKYTDFLSPSEQKIFEKTILKYRQQDINYNLEGGYPFAER-KIAIIYFDFLQPEDTPI 80
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
A+ I GNF SH D LGS+LG GI R+KIGDII++ +K L+ ++ Y++ +
Sbjct: 81 CAVRIEGNFS--NLSHRDVLGSLLGLGIRRQKIGDIIVKEDK-CDILLHKDVESYVLMNF 137
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
KVG V + I L + R K + ASLRVD++A+AGF +SR+K LI +G
Sbjct: 138 FKVGKEKVRVSSIDLKDVMEPEIRYKDIFSTVASLRVDSVAAAGFGISRTKASQLIKSGL 197
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
+++NW + ++ GD++S+ G GRI++ E+ +T+KG+ +V +++++
Sbjct: 198 LQINWEYTDDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRVSVHILRFI 248
>gi|294792855|ref|ZP_06758002.1| S4 domain protein [Veillonella sp. 6_1_27]
gi|294456754|gb|EFG25117.1| S4 domain protein [Veillonella sp. 6_1_27]
Length = 261
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 132/226 (58%), Gaps = 6/226 (2%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+DF +P V+ +++ A VK GGY AER R++ + + + AL +
Sbjct: 39 ADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIRIAFVDSDFNGTVDMGIRALKV 96
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
+ F+ +H D LGS++G GI R K GD+I+Q + GAQ +V +AD++I + K+
Sbjct: 97 NWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGAQIMVDESVADFVIQNFTKIAM 155
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
VSVS I L + + + K +T ASLR+DA+AS+GF +SR+KLV+ I+ G ++VNW
Sbjct: 156 VSVSVEAIELSDIAPKEEKIKEVRTTVASLRLDAVASSGFSVSRTKLVSAINAGLLQVNW 215
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVELIQYL 236
++ GD++S+ G+GRIK+ I T RKG+ V L +++
Sbjct: 216 QPAKGASQEVKEGDVISMRGRGRIKVEAITGTSRKGRIGVYLKRFM 261
>gi|407474154|ref|YP_006788554.1| RNA-binding S4 domain-containing protein [Clostridium acidurici 9a]
gi|407050662|gb|AFS78707.1| putative RNA-binding S4 domain-containing protein [Clostridium
acidurici 9a]
Length = 262
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 126/226 (55%), Gaps = 6/226 (2%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDI 65
+V ++DFL P K S L +L DV +GG +ER + + PE ++ + +
Sbjct: 34 HHDVEYTDFLDPYQRKLSHSILNRL-DVSYYEEGGLEDSERKSIII-FPEYMSKENIENP 91
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ A+ I GNF F H D+LG+ILG GI REK+GDI + E A L+ EL D++I +
Sbjct: 92 IKAIKIEGNFKFTNLRHKDYLGAILGLGIKREKVGDINIY-EDFAIILLHKELLDFVIYN 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+ +G +V+ +I L +E + +T +SLR+DAL S LSRSK N I+ G
Sbjct: 151 LKNIGRENVTVRQISLGEIEKTKEEFEDIQTTISSLRLDALISGVCNLSRSKSANQIAQG 210
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAV 230
V+VNW + + D++S+ G GRIK I E+ ++KGK V
Sbjct: 211 KVKVNWQPILNASYEIGEDDVISIRGFGRIKIISELGKSKKGKDKV 256
>gi|294794611|ref|ZP_06759747.1| S4 domain protein [Veillonella sp. 3_1_44]
gi|294454941|gb|EFG23314.1| S4 domain protein [Veillonella sp. 3_1_44]
Length = 261
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 132/226 (58%), Gaps = 6/226 (2%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+DF +P V+ +++ A VK GGY AER R++ + + + AL +
Sbjct: 39 ADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIRIAFVDSDFNGTVDMGIRALKV 96
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
+ F+ +H D LGS++G GI R K GD+I+Q + GAQ +V +AD++I + K+
Sbjct: 97 NWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGAQIMVDESVADFVIQNFTKIAM 155
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
VSVS I L + + + K +T ASLR+DA+AS+GF +SR+KLV+ I+ G ++VNW
Sbjct: 156 VSVSVETIELSDIAPKEEKIKEVRTTVASLRLDAVASSGFSVSRTKLVSAINAGLLQVNW 215
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVELIQYL 236
++ GD++S+ G+GR+K+ I T RKG+ V L +++
Sbjct: 216 QPAKGASQEVKEGDVISMRGRGRMKVEAITGTSRKGRIGVYLKRFM 261
>gi|269798485|ref|YP_003312385.1| RNA-binding S4 domain-containing protein [Veillonella parvula DSM
2008]
gi|282849929|ref|ZP_06259312.1| S4 domain protein [Veillonella parvula ATCC 17745]
gi|269095114|gb|ACZ25105.1| RNA-binding S4 domain protein [Veillonella parvula DSM 2008]
gi|282580366|gb|EFB85766.1| S4 domain protein [Veillonella parvula ATCC 17745]
Length = 261
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 132/226 (58%), Gaps = 6/226 (2%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+DF +P V+ +++ A VK GGY AER R++ + + + AL +
Sbjct: 39 ADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIRIAFVDSDFNGTVDMGIRALKV 96
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
+ F+ +H D LGS++G GI R K GD+I+Q + GAQ +V +AD++I + K+
Sbjct: 97 NWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGAQIMVDESVADFVIQNFTKIAM 155
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
VSVS I L + + + K +T ASLR+DA+AS+GF +SR+KLV+ I+ G ++VNW
Sbjct: 156 VSVSVEAIELSDIAPKEEKIKEVRTTVASLRLDAVASSGFSVSRTKLVSAINAGLLQVNW 215
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVELIQYL 236
++ GD++S+ G+GR+K+ I T RKG+ V L +++
Sbjct: 216 QPAKGASQEVKEGDVISMRGRGRMKVEAITGTSRKGRIGVYLKRFM 261
>gi|78213667|ref|YP_382446.1| RNA-binding S4 [Synechococcus sp. CC9605]
gi|78198126|gb|ABB35891.1| RNA-binding S4 [Synechococcus sp. CC9605]
Length = 258
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 121/220 (55%), Gaps = 1/220 (0%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
S FL+ P+ +E+M L L+++ ++ GGYP AER RL + + L I G
Sbjct: 36 SPFLSAPLREEAMARLGSLSELTWMSDGGYPGAERQRLLCHRRDDSPDAEPPIQGLLIEG 95
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
NF F P S D ++ G+ + IGD+ ++G++G Q + P A L L V V
Sbjct: 96 NFLFDPLSPEDLREALQTMGVDADNIGDLWVRGDRGGQGICTPSAAKALHGRLGAVREVE 155
Query: 134 VSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+ C PL L+ R+ ++ +T+EAS R+DA+ASAGF LSR+K+V + G +R+NW
Sbjct: 156 IRCESRPLEQLQQPVQRSVRTLQTVEASCRLDAIASAGFGLSRAKIVTHVKAGRLRLNWG 215
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
V + L GD + + +G +++ + T++ ++ VEL
Sbjct: 216 NVRQASRELVVGDRLQLQDRGSVEVLSLTRTKRERWRVEL 255
>gi|167037285|ref|YP_001664863.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040520|ref|YP_001663505.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter sp.
X514]
gi|256751718|ref|ZP_05492592.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914567|ref|ZP_07131883.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X561]
gi|307724197|ref|YP_003903948.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter sp.
X513]
gi|320115701|ref|YP_004185860.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|326389981|ref|ZP_08211544.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus JW
200]
gi|392940765|ref|ZP_10306409.1| hypothetical protein ThesiDRAFT1_2100 [Thermoanaerobacter
siderophilus SR4]
gi|166854760|gb|ABY93169.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X514]
gi|166856119|gb|ABY94527.1| RNA-binding S4 domain protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256749387|gb|EEU62417.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889502|gb|EFK84648.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X561]
gi|307581258|gb|ADN54657.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X513]
gi|319928792|gb|ADV79477.1| RNA-binding S4 domain protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|325994041|gb|EGD52470.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus JW
200]
gi|392292515|gb|EIW00959.1| hypothetical protein ThesiDRAFT1_2100 [Thermoanaerobacter
siderophilus SR4]
Length = 248
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 138/232 (59%), Gaps = 9/232 (3%)
Query: 9 REVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 66
+ V ++DFL+ K E + + D+ GGYP AER ++++ +P+ L + +
Sbjct: 22 KRVKYTDFLSLSEQKIFEKTILKYRQQDINYNLDGGYPLAER-KIAIIYPDFLQPEDTPI 80
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
A+ I GNF SH D LGS+LG GI R+KIGDII++ +K L+ ++ Y++ +L
Sbjct: 81 CAVRIEGNFS--KLSHRDVLGSLLGLGIKRQKIGDIIVKEDK-CDILLHKDVESYVLMNL 137
Query: 127 EKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
KVG V I L +E E F T+ ASLRVD++A+AGF +SR+K LI +G
Sbjct: 138 FKVGKEKVRVNSIDLKDVIEPEIKYKDIFSTV-ASLRVDSVAAAGFGISRTKASELIKSG 196
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
+++NW + ++ GD++S+ G GRI++ E+ +T+KG+ +V +++++
Sbjct: 197 LLQINWEYTEDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRVSVHILRFI 248
>gi|414154543|ref|ZP_11410861.1| RNA-binding S4 domain protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411453940|emb|CCO08765.1| RNA-binding S4 domain protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 263
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 129/229 (56%), Gaps = 7/229 (3%)
Query: 12 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS---DPDIVAA 68
L ++F P + LE++ D++ GGYP AER R+++ P+ L D D V
Sbjct: 38 LLTNFYDPYHTGLIISVLERIPDLEFGTNGGYPAAERVRIAI-FPDYLDENEIDYDTVV- 95
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L++ GNF +H DFLGS+LG GI RE +GD+++ G Q + E+A YL T L +
Sbjct: 96 LAVEGNFKMVQVTHRDFLGSVLGLGIKREMVGDLLVTN-NGCQVVATREVASYLSTHLTR 154
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V V V+ I L R K KT ASLR+DA+A+AGF SR++LV I +
Sbjct: 155 VHRVRVTVREILPAELVLPEVRVKEIKTTVASLRIDAVAAAGFGTSRTRLVREILAEKLS 214
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
+NW T +R GDI+S+ G+GR+++ E+ +T+ G+ + + ++L
Sbjct: 215 LNWHTCANAAAPVRQGDIISLRGRGRLELAEVRGNTKSGRIGIVIKRFL 263
>gi|374602415|ref|ZP_09675408.1| hypothetical protein PDENDC454_05666 [Paenibacillus dendritiformis
C454]
gi|374392017|gb|EHQ63346.1| hypothetical protein PDENDC454_05666 [Paenibacillus dendritiformis
C454]
Length = 262
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 128/232 (55%), Gaps = 6/232 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
RRAS EV +DFL P + + + +DV+ GG QAER R + P+ + +D
Sbjct: 27 RRASEGHEVKRTDFLDPRQAYIAATLVNRSSDVQLRLDGGSEQAERKRALIA-PDYVYAD 85
Query: 63 PDI--VAALSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+ ++ L IT + + HGDFLG++LG GI REKIGDI + ++ LV E+A
Sbjct: 86 GEDMGISVLQITSPDRKWDELEHGDFLGALLGLGIKREKIGDIHVSPDR-CHVLVTEEMA 144
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
++ T L +V VSV +PL L+ K+ K ASLR+D +AS F+LSR+K+V
Sbjct: 145 PFVNTHLRQVHRVSVLTDILPLSGLQAADAEMKTAKLSVASLRLDGIASDVFRLSRAKIV 204
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
I G +VNW L GD+VS+ G GR K+ ++ T+KG++ V
Sbjct: 205 APIKAGRCKVNWKVEENPSAPLEAGDVVSLQGFGRFKVIDVEGLTKKGRYWV 256
>gi|238018691|ref|ZP_04599117.1| hypothetical protein VEIDISOL_00535 [Veillonella dispar ATCC 17748]
gi|237865162|gb|EEP66452.1| hypothetical protein VEIDISOL_00535 [Veillonella dispar ATCC 17748]
Length = 261
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 132/226 (58%), Gaps = 6/226 (2%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+DF +P V+ +++ A VK GGY AER R++ + + + AL +
Sbjct: 39 ADFTSPAGLVIADAIKANYPQLIVKT--DGGYEGAERIRIAFVDSDFNGTVDMGIRALKV 96
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
+ F+ +H D LGS++G GI R K GD+I+Q + GAQ LV +AD++I + K+
Sbjct: 97 NWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGAQILVDESVADFVIQNFTKIAM 155
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
VSVS I L + + + K +T ASLR+DA+AS+GF +SR+KLV+ I+ G ++VNW
Sbjct: 156 VSVSVEAIDLSDIAPKEEKIKEVRTTVASLRLDAVASSGFSVSRTKLVSAINAGLLQVNW 215
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVELIQYL 236
++ GD++S+ G+GR+K+ I T RKG+ V L +++
Sbjct: 216 QPAKGASQEVKEGDVISMRGRGRMKVEAITGTSRKGRIGVYLKRFM 261
>gi|258514373|ref|YP_003190595.1| RNA-binding S4 domain-containing protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257778078|gb|ACV61972.1| RNA-binding S4 domain protein [Desulfotomaculum acetoxidans DSM
771]
Length = 267
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 123/225 (54%), Gaps = 5/225 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD-PDIVAALSIT 72
+DF P + +E + D+K + GGY +AER R+ + PE + P + L
Sbjct: 46 TDFYDPHRMNLIAAMIENM-DLKILLWGGYEEAERKRMLL-VPEHYKGEWPSLTGCLLAE 103
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
GNF +H D+LG++LG GI REK+GDII+ E AQ +V E++D++ +L K+G V
Sbjct: 104 GNFKTIEVTHRDYLGALLGLGIKREKLGDIIVL-ENAAQLIVAEEISDFIAANLVKIGRV 162
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
VS RI L + K +T SLR D + GF SRSK+ I+ + +NW
Sbjct: 163 RVSVKRIKEQDLILPEKKFKEIRTTVPSLRFDVICGEGFGTSRSKIAREITAEKINLNWQ 222
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
+ + ++ DI+S G+GR++I E+ T+KG+ V L +YL
Sbjct: 223 SCSDLSRPVKEKDIISARGRGRLEIYEVGGKTKKGRLVVVLRKYL 267
>gi|121535251|ref|ZP_01667065.1| RNA-binding S4 domain protein [Thermosinus carboxydivorans Nor1]
gi|121306136|gb|EAX47064.1| RNA-binding S4 domain protein [Thermosinus carboxydivorans Nor1]
Length = 262
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 128/232 (55%), Gaps = 8/232 (3%)
Query: 9 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 68
R+ S FL P + A ++ + GGY AER + H + L S +AA
Sbjct: 35 RKYRASHFLDPFGFSVAETIAAHFAPLRLESSGGYEGAERVKAVFVHEDFLGSIDFAIAA 94
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
+ I + + SH D LG+++G GI R+ +GDII+ G GAQ +V +A ++ T+L K
Sbjct: 95 VGIAWDARYYELSHRDMLGALMGLGIDRDVVGDIIMTG-SGAQVVVDTAMAGFIETNLTK 153
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEA---SLRVDALASAGFKLSRSKLVNLISNG 185
VG V+ IPL + PR + K I A SLR+D +A+AGF LSR+K+ I+
Sbjct: 154 VGAAPVAVKIIPLSDI---APRIEKVKEIRATVPSLRLDVVAAAGFGLSRTKMAAEIAAD 210
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
V+VNW ++ GDI+S+ G+GR++I EI T+KG+ ++ L ++L
Sbjct: 211 KVKVNWQEAKNAAQAVKPGDIISMRGRGRVEICEILGQTKKGRISIFLKRFL 262
>gi|313892887|ref|ZP_07826464.1| S4 domain protein [Veillonella sp. oral taxon 158 str. F0412]
gi|313442240|gb|EFR60655.1| S4 domain protein [Veillonella sp. oral taxon 158 str. F0412]
Length = 261
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 132/226 (58%), Gaps = 6/226 (2%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+DF +P V+ +++ A VK GGY AER R++ + + + AL +
Sbjct: 39 ADFTSPAGLVIADAIKANYPQLIVKT--DGGYEGAERIRIAFVDSDFNGTVDMGIRALKV 96
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
+ F+ +H D LGS++G GI R K GD+I+Q + GAQ +V +AD++I + K+
Sbjct: 97 NWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGAQIMVDESVADFVIQNFTKIAM 155
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
VSVS I L + + + K +T ASLR+DA+AS+GF +SR+KLV+ I+ G ++VNW
Sbjct: 156 VSVSVEAIELSDIAPKEEKIKEVRTTVASLRLDAVASSGFSVSRTKLVSAINAGLLQVNW 215
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVELIQYL 236
++ GD++S+ G+GR+K+ I T RKG+ V L +++
Sbjct: 216 QPAKGASQEVKEGDVISMRGRGRMKVEAITGTSRKGRIGVYLKRFM 261
>gi|33865067|ref|NP_896626.1| hypothetical protein SYNW0531 [Synechococcus sp. WH 8102]
gi|33638751|emb|CAE07046.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 291
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 1/222 (0%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
SDFL P+ +E++ L L+++ GG+ AERCRL + + L I G
Sbjct: 69 SDFLDAPLQEEALKRLSDLSELAWHRDGGHQGAERCRLLCHRRDQPVESTPPIQGLLIEG 128
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
NF F P + D ++ G E +GD+ ++G++G Q L+ P A+ L ++ +V
Sbjct: 129 NFLFDPLTPEDLRSALHNMGAQPEDLGDLWVRGDRGGQGLISPNAAELLQGRRGQLRDVE 188
Query: 134 VSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+ C + + L+ R K T+EAS R+DA+ASAGF LSRSK+V+ I G +R+NW
Sbjct: 189 IHCDVLEITQLQLPAQRNPKRLTTVEASCRIDAIASAGFGLSRSKVVSQIKAGRLRLNWE 248
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 234
V + L+ GD + + +G +++ T++ ++ +EL++
Sbjct: 249 PVLQGSRELKVGDRLQLQDRGSLELLSCTLTKRERWRIELMR 290
>gi|416998514|ref|ZP_11939275.1| S4 domain protein [Veillonella parvula ACS-068-V-Sch12]
gi|333977412|gb|EGL78270.1| S4 domain protein [Veillonella parvula ACS-068-V-Sch12]
Length = 261
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 132/226 (58%), Gaps = 6/226 (2%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+DF +P V+ +++ A VK GGY AER R++ + + + AL +
Sbjct: 39 ADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIRIAFVDSDFNGTVDMGIRALKV 96
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
+ F+ +H D LGS++G GI R K GD+I+Q + GAQ +V +AD++I + K+
Sbjct: 97 NWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQ-QGGAQIMVDESVADFVIQNFTKIAM 155
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
VSVS I L + + + K +T ASLR+DA+AS+GF +SR+KLV+ I+ G ++VNW
Sbjct: 156 VSVSVEAIELSDIAPKEEKIKEVRTTVASLRLDAVASSGFSVSRTKLVSAINAGLLQVNW 215
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
++ GD++S+ G+GR+K+ I +RKG+ V L +++
Sbjct: 216 QPAKGASQEVKEGDVISMRGRGRMKVEAITGISRKGRIGVYLKRFM 261
>gi|289578633|ref|YP_003477260.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
italicus Ab9]
gi|289528346|gb|ADD02698.1| RNA-binding S4 domain protein [Thermoanaerobacter italicus Ab9]
Length = 248
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 137/232 (59%), Gaps = 9/232 (3%)
Query: 9 REVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 66
+ V ++DFL+P K E + + D+ GGYP AER ++++ + + L + +
Sbjct: 22 KRVKYTDFLSPSEQKIFEKTILKYRQQDINYNLDGGYPFAER-KIAIIYFDFLQPEETPI 80
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
A+ I GNF SH D LGS+LG GI R+KIGDII++ +K L+ ++ Y++ +
Sbjct: 81 CAVRIEGNFS--NLSHRDVLGSLLGLGIRRQKIGDIIVKEDK-CDILLHKDVESYVLMNF 137
Query: 127 EKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
KVG V I L +E E F T+ ASLRVD++A+AGF +SR+K LI +G
Sbjct: 138 FKVGKEKVRINSIDLKDVMEPEIKYKDIFSTV-ASLRVDSIAAAGFGISRTKASQLIKSG 196
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
++VNW + ++ GD++S+ G GRI++ E+ +T+KG+ +V +++++
Sbjct: 197 LLQVNWEYTGDPSSEVKEGDVISLRGFGRIRLEEVRGNTKKGRVSVHILRFI 248
>gi|303229252|ref|ZP_07316048.1| S4 domain protein [Veillonella atypica ACS-134-V-Col7a]
gi|302516107|gb|EFL58053.1| S4 domain protein [Veillonella atypica ACS-134-V-Col7a]
Length = 261
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 123/199 (61%), Gaps = 6/199 (3%)
Query: 41 GGYPQAERCRLSV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
GGY AER R++ H + T D IV L ++ + F+ +H D LGS++G GI R K
Sbjct: 66 GGYEGAERIRIAFVDSHFQG-TVDMGIVP-LKVSWDPRFRLLNHRDVLGSLMGLGIDRSK 123
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 158
GDII+ G+ GAQ LV +AD+++ + K+ V+VS T + L + + + K +T
Sbjct: 124 FGDIIM-GQGGAQILVDSAVADFVVQNFTKIAMVAVSVTPMELDEIAPKEEKIKEVRTTV 182
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218
ASLR+DA+AS+GF +SR+KLV+ ++ G ++VNW ++ GDI+S+ G+GR+K+
Sbjct: 183 ASLRLDAVASSGFSVSRTKLVSAVNAGLLQVNWQPAKGPSQEVKEGDIISMRGRGRMKVE 242
Query: 219 EINST-RKGKFAVELIQYL 236
I T RKG+ V L +++
Sbjct: 243 AITGTSRKGRIGVYLKRFM 261
>gi|188585944|ref|YP_001917489.1| RNA-binding S4 domain-containing protein [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350631|gb|ACB84901.1| RNA-binding S4 domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 265
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 5/226 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DF P L + + +DV A+ GG AER ++ + P+ PD + L +
Sbjct: 40 TDFFDPHQLTIAEKVINTFSDVSALFYGGLADAERKKVGI-FPKEWNVTPDQLGIEVLEL 98
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLEKVG 130
GNF F SH D LG+++G G+ R+KIGDI + E+ + V E ++ ++ +L +V
Sbjct: 99 RGNFRFSSISHRDVLGAVMGLGLKRDKIGDIHVMEEEHRLIIAVDESISQFITQNLTQVK 158
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
NVSVS + + + T+ K +SLR+DA+AS GF SRSK+ LI +++N
Sbjct: 159 NVSVSAEAMDQEEIPRQQEYTREIKGTVSSLRLDAVASIGFGASRSKMSQLIKAERIKLN 218
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
W T+ GD++S+ GKGR++I I +RKG+ V L +Y
Sbjct: 219 WQPTKDPKATVSEGDVISLRGKGRVEISAIGGKSRKGRRHVTLKRY 264
>gi|227498574|ref|ZP_03928718.1| S4 RNA-binding protein [Acidaminococcus sp. D21]
gi|352684241|ref|YP_004896226.1| S4 RNA-binding protein [Acidaminococcus intestini RyC-MR95]
gi|226904030|gb|EEH89948.1| S4 RNA-binding protein [Acidaminococcus sp. D21]
gi|350278896|gb|AEQ22086.1| S4 RNA-binding protein [Acidaminococcus intestini RyC-MR95]
Length = 261
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 130/238 (54%), Gaps = 4/238 (1%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A +A R + SDF+ P + + + + + GG+ AER R++ +
Sbjct: 26 LADQARRNRRYMVSDFMDPHGINVADIVASNYTQITMKSFGGFQNAERMRIAY-VVDDFY 84
Query: 61 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+PD +AAL +T + + H D LG+ G G +R+ +GDI+ E GAQ +V +
Sbjct: 85 GEPDFAIAALLVTWDKRYYDVGHRDVLGAFTGMGCSRDILGDIVFTDE-GAQMVVDKTMV 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+++++L ++G +V IPL L+ + R K ++LR+DA+A+AGF +SRS++
Sbjct: 144 PFILSNLTQIGAATVEVKEIPLTELKEKEQRVKVISATVSALRLDAVAAAGFGVSRSRMA 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
I +VRVNW ++ GD++S +GR ++ E+ +T+KG+ A+ + +YL
Sbjct: 204 EEIKGQNVRVNWQDAKNPSQLVKEGDVISFRSRGRAELAEVRGTTKKGRMAITMKRYL 261
>gi|376260959|ref|YP_005147679.1| hypothetical protein [Clostridium sp. BNL1100]
gi|373944953|gb|AEY65874.1| hypothetical protein Clo1100_1662 [Clostridium sp. BNL1100]
Length = 260
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 127/224 (56%), Gaps = 11/224 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI---VAAL 69
+SDFL+P + L+++ DV GGY AER ++V + + D V L
Sbjct: 36 YSDFLSPYEASVAKKVLDRVKDVFYKLTGGYEGAERA-ITVISSDFIEEDIPYNTPVGLL 94
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
IT SH D+LGS+LG GI REKIGDI++ E A V+ ++A+Y++ +L+K+
Sbjct: 95 RITPVIE-NKLSHRDYLGSLLGLGIKREKIGDILV-NETFADVFVIDKIAEYILYNLDKI 152
Query: 130 GNVSVSCTRIPLLALEYEPPRTK--SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
GNV V C + ++ PP+ K S T ASLR D++AS+GF LSR+K+++ V
Sbjct: 153 GNVKVQCELCDI--YQFTPPQKKERSINTTVASLRADSVASSGFGLSRTKVMDYFKAQRV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
VNW V L GD++S+ G GRI + ++ +TRK + ++
Sbjct: 211 NVNWELVQSPSKMLDEGDVISIRGMGRIVLEKVLGNTRKDRISI 254
>gi|88807417|ref|ZP_01122929.1| RNA-binding S4 [Synechococcus sp. WH 7805]
gi|88788631|gb|EAR19786.1| RNA-binding S4 [Synechococcus sp. WH 7805]
Length = 259
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 134/242 (55%), Gaps = 9/242 (3%)
Query: 1 MARRASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 54
MAR EVL S FL+ P L E LE L++++ V GG AERCRL +
Sbjct: 18 MARLLDQAEEVLRTWQPSWSPFLSGPEL-EDAGKLEALSELRMVRDGGREGAERCRLQLS 76
Query: 55 HPEALT-SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 113
+ T S+ + L + GNF F D +++ ++ + IGD+ L+G++GAQ +
Sbjct: 77 RRDQETNSESAPLCGLRLEGNFLFDRAEPDDMRQALMRLDVSADAIGDLWLRGDRGAQAI 136
Query: 114 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFK 172
PE ++L +V +V + +PL AL++ RT + +++EAS R+DA+ASAGF
Sbjct: 137 CTPEAGEHLNGLTGQVRDVPLLLETVPLEALQWPARRTPRLLRSVEASCRLDAIASAGFG 196
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
LSRSK+ I G +R+NW + + L+ GD + + +G +++ + T++ ++ VE+
Sbjct: 197 LSRSKVTREIKEGRLRLNWGAIRQASRDLKVGDQLQLQDRGSVEVLSLTLTKRERWRVEM 256
Query: 233 IQ 234
++
Sbjct: 257 MR 258
>gi|303230546|ref|ZP_07317300.1| S4 domain protein [Veillonella atypica ACS-049-V-Sch6]
gi|401680660|ref|ZP_10812572.1| S4 domain protein [Veillonella sp. ACP1]
gi|429760793|ref|ZP_19293254.1| S4 domain protein [Veillonella atypica KON]
gi|302514787|gb|EFL56775.1| S4 domain protein [Veillonella atypica ACS-049-V-Sch6]
gi|400218325|gb|EJO49208.1| S4 domain protein [Veillonella sp. ACP1]
gi|429176701|gb|EKY18066.1| S4 domain protein [Veillonella atypica KON]
Length = 261
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 123/199 (61%), Gaps = 6/199 (3%)
Query: 41 GGYPQAERCRLSV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
GGY AER R++ H + T D I+ L ++ + F+ +H D LGS++G GI R K
Sbjct: 66 GGYEGAERIRIAFVDSHFQG-TVDMGIIP-LKVSWDPRFRLLNHRDVLGSLMGLGIDRSK 123
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 158
GDII+ G+ GAQ LV +AD+++ + K+ V+VS T + L + + + K +T
Sbjct: 124 FGDIIM-GQGGAQILVDSAVADFVVQNFTKIAMVAVSVTPMELDEIAPKEEKIKEVRTTV 182
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218
ASLR+DA+AS+GF +SR+KLV+ ++ G ++VNW ++ GDI+S+ G+GR+K+
Sbjct: 183 ASLRLDAVASSGFSVSRTKLVSAVNAGLLQVNWQPAKGPSQEVKEGDIISMRGRGRMKVE 242
Query: 219 EINST-RKGKFAVELIQYL 236
I T RKG+ V L +++
Sbjct: 243 AITGTSRKGRIGVYLKRFM 261
>gi|374296346|ref|YP_005046537.1| hypothetical protein [Clostridium clariflavum DSM 19732]
gi|359825840|gb|AEV68613.1| hypothetical protein Clocl_2014 [Clostridium clariflavum DSM 19732]
Length = 263
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 134/234 (57%), Gaps = 19/234 (8%)
Query: 14 SDFLTPPVLKESMMALEKLADVKA-VAQGGYPQAERCRLSVGHPEALTSD--PDIVAALS 70
+DFL P ++ + A +D+ + GGY AER + V P + D PD++
Sbjct: 38 TDFLDPR-MQNVVSACLNSSDIDNFLFYGGYEGAERA-VVVFCPRNMPIDYEPDLIGFFK 95
Query: 71 ITGNFGFQPC-------SHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 123
+ + C SH D+LGS++G GI REKIGDI+++ E +V ++ADY+
Sbjct: 96 V-----LKICLMSRGSVSHRDYLGSLMGLGIKREKIGDILIKDEH-CLVIVENDVADYIK 149
Query: 124 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 183
+LEKVGN+ V + L +L+ + K +T ASLR+D++ASAGF +SRSK+ I
Sbjct: 150 YNLEKVGNIKVELDYVGLDSLQAREQKVKEIRTTVASLRLDSVASAGFGMSRSKVQEYIR 209
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
V +NW T T +++ GD++S+ GKGR+ + EI +T+K + ++ L +++
Sbjct: 210 AERVNLNWETTTNLKKSVKEGDLISIRGKGRVLVQEIGGTTKKDRISIYLKKFI 263
>gi|255656596|ref|ZP_05402005.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-23m63]
gi|296449950|ref|ZP_06891714.1| possible ribosomal protein S4e [Clostridium difficile NAP08]
gi|296878332|ref|ZP_06902340.1| possible ribosomal protein S4e [Clostridium difficile NAP07]
gi|296261220|gb|EFH08051.1| possible ribosomal protein S4e [Clostridium difficile NAP08]
gi|296430630|gb|EFH16469.1| possible ribosomal protein S4e [Clostridium difficile NAP07]
Length = 261
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 5/225 (2%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDIVA 67
+V ++FL P +K ++ L ++K GGY QAER + + +P + + D +
Sbjct: 34 DVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPFYMEYEDIEDTLR 92
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I GNF F+ SH D+LGSILG GI REKIGDII+ + Q +V ++ D++I +LE
Sbjct: 93 FLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIH-DSFCQVVVSSDICDFIIVNLE 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
KV +V I + + K +S R+D + S + +SR I+ V
Sbjct: 152 KVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISRQDSAKYINGEKV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 231
VN+ +T ++ D++S+ GKGR K+ +I + TRKGK V+
Sbjct: 212 HVNYEKITSTSKIVKNDDLISIRGKGRAKVTQIGDITRKGKIKVQ 256
>gi|220931768|ref|YP_002508676.1| RNA-binding S4 domain-containing protein [Halothermothrix orenii H
168]
gi|219993078|gb|ACL69681.1| RNA-binding S4 domain protein [Halothermothrix orenii H 168]
Length = 262
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 121/214 (56%), Gaps = 8/214 (3%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG----HPEALTSDP 63
R+ + ++FL P + ++++ D+ GGY +AER R+++ +PE + +
Sbjct: 33 RKSEVSTNFLNPHEQSIAEGLIKQVYDINYKIDGGYDRAERKRVTLFPDYLYPEHVKTP- 91
Query: 64 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 123
V L + GNF F SH DFLG+ILG GI RE IGDI++ + A+ +V E+ +Y+
Sbjct: 92 --VCILKVEGNFKFNSVSHRDFLGAILGLGIKREMIGDILILKD-FAEVVVAEEIKEYIC 148
Query: 124 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 183
L+KV V V+ + + T+ F T S+R+DA++SAGF SR+K+ +I
Sbjct: 149 LRLKKVHQVPVNVEELDRENVVIPAENTREFTTTVPSMRLDAVSSAGFGDSRNKISRIIK 208
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
+ V+VNW T+ GD++S+ G+GR++I
Sbjct: 209 SEKVKVNWKKENNPAQTVEIGDLISIKGRGRVQI 242
>gi|148240319|ref|YP_001225706.1| hypothetical protein SynWH7803_1983 [Synechococcus sp. WH 7803]
gi|147848858|emb|CAK24409.1| Conserved hypothetical protein [Synechococcus sp. WH 7803]
Length = 259
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 134/242 (55%), Gaps = 9/242 (3%)
Query: 1 MARRASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 54
MAR EVL S FLT P L+E+ LE LA+++ V GG AERCRL +
Sbjct: 18 MARLLDQAEEVLRTWQPSWSPFLTGPELEEAG-KLEALAELRMVRDGGREGAERCRLQLS 76
Query: 55 H-PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 113
+ ++ + L + GNF F D +++ ++ + IGD+ L+G++GAQ +
Sbjct: 77 RRDQEADAESAPLCGLRLEGNFLFDRAEPDDMRQALMQLDVSADSIGDLWLRGDRGAQAV 136
Query: 114 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFK 172
PE + L +V +V + +PL AL++ RT + +++EAS R+DA+ASAGF
Sbjct: 137 CTPEAGEQLNGLTGQVRDVPLLLETVPLDALQWPARRTPRLLRSVEASCRLDAIASAGFG 196
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
LSRSK+ I G +R+NW + + ++ GD + + +G +++ + T++ ++ VE+
Sbjct: 197 LSRSKVTREIKEGRLRLNWGAIRQASRDVKVGDQLQLQDRGSVEVLSLTLTKRERWRVEM 256
Query: 233 IQ 234
++
Sbjct: 257 MR 258
>gi|312143929|ref|YP_003995375.1| RNA-binding S4 domain-containing protein [Halanaerobium
hydrogeniformans]
gi|311904580|gb|ADQ15021.1| RNA-binding S4 domain protein [Halanaerobium hydrogeniformans]
Length = 262
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 116/210 (55%), Gaps = 8/210 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV----AAL 69
SDFL P K + +++++D+ +GGY AER RL + PE L PD+V A
Sbjct: 39 SDFLNPYQQKIAEGIVKQISDINFKFEGGYKAAERKRLLI-FPEYLF--PDLVESQIAIF 95
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
I GNF FQ +H DFLG+++G G+ R+ IGDI++ AQ + E+ D + +KV
Sbjct: 96 KIKGNFSFQNLTHRDFLGAVMGLGLQRKVIGDILIHS-GFAQLVTAVEVKDIIELRFDKV 154
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V V +I + K T S+R+DA+AS+GF SRSK+ I N +V++
Sbjct: 155 HQVPVEVEKISADDIIKPTQYEKEILTTVPSMRLDAVASSGFGDSRSKMSRSIKNEEVKL 214
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
NW + + GD++SV G+GR+K+ E
Sbjct: 215 NWKIESDPAAEVEIGDLISVRGRGRVKVEE 244
>gi|210622350|ref|ZP_03293119.1| hypothetical protein CLOHIR_01067 [Clostridium hiranonis DSM 13275]
gi|210154338|gb|EEA85344.1| hypothetical protein CLOHIR_01067 [Clostridium hiranonis DSM 13275]
Length = 261
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 7/226 (3%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI---V 66
E ++F+ P +K +M + +D+K + GGY AER LS+ +P + + DI +
Sbjct: 34 EAKSTEFMNPFEVKNAMDIINSESDLKYHSDGGYEGAERSVLSI-YPFYMEYE-DIEQPI 91
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
+ I GNF F+ SH D+LGS+LG GI REKIGDI++ E Q +V ++ DY++ +L
Sbjct: 92 KFIQIDGNFKFRSVSHKDYLGSLLGLGIKREKIGDILIH-EDFCQVIVSSDICDYIVMNL 150
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
KV SV I L+ + K +S R+D + S + +SR + + I+
Sbjct: 151 TKVATNSVKVKEINREELKTSEKKYKDISFTVSSDRLDCVISGIYNISRQESLKYINAER 210
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 231
V +N+ +T T+ +GD++SV GKGR ++ EI TRKG+ V+
Sbjct: 211 VHLNYEKITSASKTVSSGDLISVRGKGRSEVVEIGGETRKGRTRVK 256
>gi|254976209|ref|ZP_05272681.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-66c26]
gi|255093596|ref|ZP_05323074.1| putative RNA-binding cell division protein [Clostridium difficile
CIP 107932]
gi|255307652|ref|ZP_05351823.1| putative RNA-binding cell division protein [Clostridium difficile
ATCC 43255]
gi|255315344|ref|ZP_05356927.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-76w55]
gi|255518009|ref|ZP_05385685.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-97b34]
gi|255651125|ref|ZP_05398027.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-37x79]
gi|260684191|ref|YP_003215476.1| RNA-binding cell division protein [Clostridium difficile CD196]
gi|260687850|ref|YP_003218984.1| RNA-binding cell division protein [Clostridium difficile R20291]
gi|384361833|ref|YP_006199685.1| RNA-binding cell division protein [Clostridium difficile BI1]
gi|423092653|ref|ZP_17080457.1| S4 domain protein [Clostridium difficile 70-100-2010]
gi|260210354|emb|CBA64710.1| putative RNA-binding cell division protein [Clostridium difficile
CD196]
gi|260213867|emb|CBE05880.1| putative RNA-binding cell division protein [Clostridium difficile
R20291]
gi|357553523|gb|EHJ35270.1| S4 domain protein [Clostridium difficile 70-100-2010]
Length = 261
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 5/225 (2%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDIVA 67
+V ++FL P +K ++ L ++K GGY QAER + + +P + + D +
Sbjct: 34 DVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPFYMEYEDIEDTLR 92
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I GNF F+ SH D+LGSILG GI REKIGDII+ + Q +V ++ D++I +LE
Sbjct: 93 FLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIH-DSFCQVVVSSDICDFIIVNLE 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
KV +V I + + K +S R+D + S + +SR I+ V
Sbjct: 152 KVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISRQDSAKYINGEKV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 231
VN+ +T ++ D++S+ GKGR K+ +I + T+KGK V+
Sbjct: 212 HVNYEKITSTSKIVKNDDLISIRGKGRAKVTQIGDITKKGKIKVQ 256
>gi|421074254|ref|ZP_15535294.1| RNA-binding S4 domain protein [Pelosinus fermentans JBW45]
gi|392527760|gb|EIW50846.1| RNA-binding S4 domain protein [Pelosinus fermentans JBW45]
Length = 261
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 120/204 (58%), Gaps = 4/204 (1%)
Query: 35 VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTG 93
+K V+ GGY AER + +V E PD+ V A+S+T + + +H D LG+++ G
Sbjct: 60 LKLVSSGGYDGAERVK-AVFVNEEFRGTPDVAVEAVSVTWDERYYQITHRDVLGALMALG 118
Query: 94 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 153
I RE IGDII+ G G Q ++ ++L+ + K+G +S ++ + + + + K
Sbjct: 119 IKREIIGDIIMCGH-GCQIIIDSSFFNFLMQNFSKIGAAPISIAQLKIADIAHREEKVKE 177
Query: 154 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 213
KT ASLR+D +A+AGF SRS++ I G ++VNW + +++ D++S+ G+G
Sbjct: 178 IKTTVASLRLDVIAAAGFGTSRSRMSEEIVAGKLKVNWQEAKNSAQSIKENDVISMRGRG 237
Query: 214 RIKIGEI-NSTRKGKFAVELIQYL 236
R+++ E+ TRKG+ ++ L +++
Sbjct: 238 RVEVCEVLGQTRKGRMSIVLKRFM 261
>gi|333371306|ref|ZP_08463261.1| S4 domain protein [Desmospora sp. 8437]
gi|332976333|gb|EGK13189.1| S4 domain protein [Desmospora sp. 8437]
Length = 259
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 7/224 (3%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF 75
FL P + M +++ ++ GG+ AER R + P D + ++ L +
Sbjct: 40 FLNPREQTITDMLVKRAPELGVTFDGGFFDAERKRARIFPPWQEEGD-NGLSYLELESVD 98
Query: 76 GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 135
P H D LGS+LG G+ RE IGD+ L E Q ++ E+ DY+ L +VG + V
Sbjct: 99 RSSPLKHPDVLGSLLGLGVKREVIGDL-LPRETHCQVIIAGEILDYIRMQLNRVGRIPVR 157
Query: 136 CTRIPLLALEYEPPR--TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
T I E PP+ T+ ASLRVDAL + F+LSR+K LI NG +NW T
Sbjct: 158 MTEIK--REEIRPPQQETEVVTVSVASLRVDALVAEAFRLSRAKATPLIKNGRCHINWKT 215
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
+R GD++S+ G+GR+++GEI T+KG+ ++LI++L
Sbjct: 216 TENPAEPVREGDMISLRGQGRVRVGEILGETKKGRHRIQLIRFL 259
>gi|334341816|ref|YP_004546796.1| RNA-binding S4 domain-containing protein [Desulfotomaculum ruminis
DSM 2154]
gi|334093170|gb|AEG61510.1| RNA-binding S4 domain-containing protein [Desulfotomaculum ruminis
DSM 2154]
Length = 262
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 123/211 (58%), Gaps = 6/211 (2%)
Query: 29 LEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFL 86
LE++ + A GGYP AER R+++ P+ L S + + L++ GNF +H DFL
Sbjct: 55 LERIPGLDFAAGGGYPTAERVRIAL-FPDYLDESQVNFELVLLAVEGNFKMVKTTHRDFL 113
Query: 87 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 146
GSIL GI RE IGDI++ +G Q +V E+A YL +L KV V V I L
Sbjct: 114 GSILSLGIKRELIGDILIT-PRGCQVIVAREVASYLRANLTKVHRVGVEVREIGFEVLSL 172
Query: 147 EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 206
K +T ASLR+DA+A+AGF +SRS++ I + +NW ++ ++ GD+
Sbjct: 173 PEVTIKEIRTTVASLRLDAVAAAGFGMSRSRMAREIQAEKLNLNWCG-SEVSAMVQEGDM 231
Query: 207 VSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
+S+ G+GR+++ E+ ST+ G+ ++ L ++L
Sbjct: 232 LSLRGRGRVEVAEVKGSTKSGRISIVLKRFL 262
>gi|357008377|ref|ZP_09073376.1| RNA-binding S4 domain-containing protein [Paenibacillus elgii B69]
Length = 260
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 12/229 (5%)
Query: 14 SDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
+DFL P + L LA DV+ GG+P AER R V + D ++ ++
Sbjct: 36 TDFLDP----RQIFILTTLANRNPDVQVRFDGGHPDAERKRALVAPDYRVLDDEEMGISL 91
Query: 69 LSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
+ IT + + HGDF+G+ILG GI R+KIGDI ++ E G FLV E+ADY+ +L
Sbjct: 92 IEITSEDEKLKELDHGDFMGAILGLGIKRDKIGDIYVR-EDGCHFLVASEIADYIRLNLS 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+V + V ++PL L+ + ASLR+D +AS ++LSR+K++ I G
Sbjct: 151 QVHRLHVRTEQLPLGKLKATETKLDEMFLSVASLRLDGIASDVYRLSRAKVLVPIKAGRC 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
+VNW L+ GD+VS+ G GR K+ E+ ++KG++ +++ +Y
Sbjct: 211 KVNWKQEEDPSKPLKQGDVVSLQGFGRFKVLEVEGVSKKGRYRLKIGKY 259
>gi|326203533|ref|ZP_08193397.1| RNA-binding S4 domain protein [Clostridium papyrosolvens DSM 2782]
gi|325986353|gb|EGD47185.1| RNA-binding S4 domain protein [Clostridium papyrosolvens DSM 2782]
Length = 260
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 11/225 (4%)
Query: 12 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI---VAA 68
++SDFL+P L+++ D GGY AER ++V + + D ++
Sbjct: 35 VYSDFLSPYEASVVKKVLDRVKDAFYKLTGGYEGAERA-ITVISSDFIEEDIPYSTPISL 93
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L IT SH D+LGS++G GI REKIGDI++ E A V+ ++A+Y++ +L+K
Sbjct: 94 LRITPVID-NKLSHRDYLGSLIGLGIKREKIGDILV-NETFADVFVIDKIAEYILYNLDK 151
Query: 129 VGNVSVSCTRIPLLALEYEPPRTK--SFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
+GNV V C + ++ PP+ K S T ASLR D++AS+GF LSR+K++
Sbjct: 152 IGNVKVQCELCDI--YQFTPPQKKERSINTTVASLRADSVASSGFGLSRTKVMEYFKAQR 209
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
V VNW V L GD++S+ G GRI + ++ +TRK + ++
Sbjct: 210 VNVNWEVVQSPSKMLDEGDVISIRGMGRIVLEKVLGNTRKDRISI 254
>gi|334133974|ref|ZP_08507509.1| S4 domain protein [Paenibacillus sp. HGF7]
gi|333608482|gb|EGL19779.1| S4 domain protein [Paenibacillus sp. HGF7]
Length = 259
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 131/235 (55%), Gaps = 6/235 (2%)
Query: 6 SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPD 64
++ +V +DFL P + + DV GGYP AER R +G P+ L S D
Sbjct: 27 AAHHKVKRTDFLDPRQAFILRTLVNRNPDVNCRLDGGYPDAERQRAILG-PDYLDLSGED 85
Query: 65 I-VAALSI-TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 122
+ + LS+ +G+ FQ SHGD++G+IL G+ R+K+GDI + E+G F+V E ADYL
Sbjct: 86 MGLRVLSVESGDSKFQALSHGDYMGAILALGMKRDKVGDINVS-EQGCHFVVAEEAADYL 144
Query: 123 ITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 182
+L +V V V+ +P+ L + + ASLR+D + S F+LSR+K++ I
Sbjct: 145 HLNLSQVHRVHVTTEILPIDKLRPSAVKLEEMSLSVASLRLDGIVSDVFRLSRAKVLIPI 204
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
G +VNW L+ GD+VS+ G GR ++ EI T+KG+ +++ +Y+
Sbjct: 205 GAGKCKVNWKPEENPSVPLQEGDVVSLQGFGRFRVLEIEGVTKKGRTRMKVGKYV 259
>gi|392960481|ref|ZP_10325949.1| RNA-binding S4 domain protein [Pelosinus fermentans DSM 17108]
gi|421054762|ref|ZP_15517727.1| RNA-binding S4 domain protein [Pelosinus fermentans B4]
gi|421061533|ref|ZP_15523848.1| RNA-binding S4 domain protein [Pelosinus fermentans B3]
gi|421066814|ref|ZP_15528368.1| RNA-binding S4 domain protein [Pelosinus fermentans A12]
gi|421071625|ref|ZP_15532741.1| RNA-binding S4 domain protein [Pelosinus fermentans A11]
gi|392440443|gb|EIW18123.1| RNA-binding S4 domain protein [Pelosinus fermentans B4]
gi|392446890|gb|EIW24161.1| RNA-binding S4 domain protein [Pelosinus fermentans A11]
gi|392449284|gb|EIW26413.1| RNA-binding S4 domain protein [Pelosinus fermentans B3]
gi|392453094|gb|EIW29998.1| RNA-binding S4 domain protein [Pelosinus fermentans A12]
gi|392455058|gb|EIW31865.1| RNA-binding S4 domain protein [Pelosinus fermentans DSM 17108]
Length = 261
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 4/204 (1%)
Query: 35 VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTG 93
+K VA GGY AER + +V E PD V A+S+T + + +H D LG+++ G
Sbjct: 60 LKLVASGGYDGAERVK-AVFINEEFRGTPDAAVEAVSVTWDERYYQITHRDVLGALMALG 118
Query: 94 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 153
I RE IGDII+ G G Q ++ ++L+ + K+G +S T++ + + + K
Sbjct: 119 IKREIIGDIIMCGH-GCQIIIDSSFFNFLMQNFSKIGAAPISITQLKIADIAPREEKVKE 177
Query: 154 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 213
KT ASLR+D +A+AGF SRS++ I G +++NW + +++ D++S+ G+G
Sbjct: 178 IKTTVASLRLDVIAAAGFGTSRSRMSEEIVAGKLKINWQEAKNSAQSIKENDVISMRGRG 237
Query: 214 RIKIGEI-NSTRKGKFAVELIQYL 236
R+++ E+ TRKG+ +V L +++
Sbjct: 238 RVEVCEVLGQTRKGRMSVVLKRFM 261
>gi|126700234|ref|YP_001089131.1| RNA-binding cell division protein [Clostridium difficile 630]
gi|255101784|ref|ZP_05330761.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-63q42]
gi|115251671|emb|CAJ69506.1| putative RNA-binding cell division protein [Clostridium difficile
630]
Length = 261
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 5/225 (2%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDIVA 67
+V ++FL P +K ++ L ++K GGY +AER + + +P + + D +
Sbjct: 34 DVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYERAERSTVFI-YPFYMEYEDIEDTLR 92
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I GNF F+ SH D+LGSILG GI REKIGDII+ + Q +V ++ D++I +LE
Sbjct: 93 FLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIH-DSFCQVVVSSDICDFIIVNLE 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
KV +V I + + K +S R+D + S + +SR I+ V
Sbjct: 152 KVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISRQDSAKYINGEKV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 231
VN+ +T ++ D++S+ GKGR K+ +I + T+KGK V+
Sbjct: 212 HVNYEKITSTSKIVKNDDLISIRGKGRAKVTQIGDITKKGKIKVQ 256
>gi|306520977|ref|ZP_07407324.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-32g58]
Length = 252
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 5/221 (2%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDIVA 67
+V ++FL P +K ++ L ++K GGY QAER + + +P + + D +
Sbjct: 34 DVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPFYMEYEDIEDTLR 92
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I GNF F+ SH D+LGSILG GI REKIGDII+ + Q +V ++ D++I +LE
Sbjct: 93 FLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIH-DSFCQVVVSSDICDFIIVNLE 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
KV +V I + + K +S R+D + S + +SR I+ V
Sbjct: 152 KVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISRQDSAKYINGEKV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 227
VN+ +T ++ D++S+ GKGR K+ +I + T+KGK
Sbjct: 212 HVNYEKITSTSKIVKNDDLISIRGKGRAKVTQIGDITKKGK 252
>gi|125973307|ref|YP_001037217.1| RNA-binding S4 protein [Clostridium thermocellum ATCC 27405]
gi|256003788|ref|ZP_05428776.1| RNA-binding S4 domain protein [Clostridium thermocellum DSM 2360]
gi|281417510|ref|ZP_06248530.1| RNA-binding S4 domain protein [Clostridium thermocellum JW20]
gi|385778780|ref|YP_005687945.1| RNA-binding S4 domain-containing protein [Clostridium thermocellum
DSM 1313]
gi|419723203|ref|ZP_14250338.1| RNA-binding S4 domain protein [Clostridium thermocellum AD2]
gi|419724893|ref|ZP_14251948.1| RNA-binding S4 domain protein [Clostridium thermocellum YS]
gi|125713532|gb|ABN52024.1| RNA-binding S4 domain protein [Clostridium thermocellum ATCC 27405]
gi|255992349|gb|EEU02443.1| RNA-binding S4 domain protein [Clostridium thermocellum DSM 2360]
gi|281408912|gb|EFB39170.1| RNA-binding S4 domain protein [Clostridium thermocellum JW20]
gi|316940460|gb|ADU74494.1| RNA-binding S4 domain protein [Clostridium thermocellum DSM 1313]
gi|380771513|gb|EIC05378.1| RNA-binding S4 domain protein [Clostridium thermocellum YS]
gi|380780970|gb|EIC10633.1| RNA-binding S4 domain protein [Clostridium thermocellum AD2]
Length = 263
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 125/229 (54%), Gaps = 7/229 (3%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG---HPEALTSD-PDIVAA 68
HSDFL P LE V GG+ AER + PE + S+
Sbjct: 37 HSDFLDPYQQNVVRKCLEMSGIRDHVFYGGFSGAERTVVVFCPYYMPENIESEFSGFFEI 96
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L I N + SH D+LGS++G GI REKIGDI+++ E A +V+ ++ADY+ +L K
Sbjct: 97 LKIKPN-TRENFSHRDYLGSLMGLGIKREKIGDILVR-EDFAFVVVLKDIADYIRINLTK 154
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
VGN V + L+ P+ K + ASLR+D++ASAGF +SRSK +LI V
Sbjct: 155 VGNARVEIDIVNPDELDILEPKVKEISSTVASLRLDSVASAGFGISRSKTADLIRGEKVA 214
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
VNW T T ++ GD +S+ GKGR+ + ++ N+T+K + + L +++
Sbjct: 215 VNWETATNPARLVKEGDTISIRGKGRVVVEKVGNTTKKDRIHILLKKFI 263
>gi|379723208|ref|YP_005315339.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|386725930|ref|YP_006192256.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus K02]
gi|378571880|gb|AFC32190.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384093055|gb|AFH64491.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 260
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 6/226 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSI 71
+DFL P + + DV+ + GG+P AER R V P+ L S+ + LSI
Sbjct: 36 TDFLDPRQAFILTTLVNRSMDVQLLLNGGHPSAERRRAWVA-PDYRVLESEDPGITLLSI 94
Query: 72 TG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
T + + HGD++G+IL GI REK+GDI ++ + G LV E+ADY +L +V
Sbjct: 95 TSPDEKLEDLDHGDYMGAILSLGIKREKVGDIHVRPD-GCHILVASEIADYFRLNLSQVH 153
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V V +PL L++ + + + ASLR+D + S ++LSR+K++ I G +VN
Sbjct: 154 RVHVMTEVLPLERLQFTEVKLEELQLSVASLRLDGIVSDVYRLSRAKVLVPIKAGRCKVN 213
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
W LR GD+VS+ G GR K+ EI T+KG+ V++ +Y
Sbjct: 214 WKQEEDPSKPLREGDVVSLQGAGRFKVLEIEGVTKKGRTRVKIGKY 259
>gi|373455824|ref|ZP_09547647.1| hypothetical protein HMPREF9453_01816 [Dialister succinatiphilus
YIT 11850]
gi|371934496|gb|EHO62282.1| hypothetical protein HMPREF9453_01816 [Dialister succinatiphilus
YIT 11850]
Length = 263
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 6/223 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF 75
F+ P + + VK+ A GGY +AER R++ + + LS+T +
Sbjct: 43 FMAPFARQIGQTIAAHMKTVKSTAFGGYHEAERVRIAFQRVDYDGPVDFSESLLSVTWDG 102
Query: 76 GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 135
++ H D LGS++G GI R GDI++QG G Q +V + D+L+ + +KV V V
Sbjct: 103 RYRLIGHRDVLGSLMGLGIDRSVTGDILMQG-AGCQIVVDSAMKDWLMDNFKKVAMVPVK 161
Query: 136 CTRIPLLALEYEPPR--TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
IPL + +PP+ K + ASLR+DA+ +AGF +SRSK+V + + VNW
Sbjct: 162 VEEIPLS--DIQPPKQTAKEVRATVASLRLDAVGAAGFGISRSKMVAAVEDERTEVNWQP 219
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRKGKFAVELIQY 235
T++ GDI+S+ G+GRI+I E +RKG+ + + +Y
Sbjct: 220 AKSASQTVKAGDIISIRGRGRIEIKEETGRSRKGRTGLLIYRY 262
>gi|423081295|ref|ZP_17069903.1| S4 domain protein [Clostridium difficile 002-P50-2011]
gi|423084646|ref|ZP_17073146.1| S4 domain protein [Clostridium difficile 050-P50-2011]
gi|357550961|gb|EHJ32765.1| S4 domain protein [Clostridium difficile 002-P50-2011]
gi|357552216|gb|EHJ33991.1| S4 domain protein [Clostridium difficile 050-P50-2011]
Length = 261
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 5/225 (2%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDIVA 67
+V ++FL P +K ++ L ++K GGY QAER + + +P + + D +
Sbjct: 34 DVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPFYMEYEDIEDTLR 92
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I GNF F+ SH D+LGSIL GI REKIGDII+ + Q +V ++ D++I +LE
Sbjct: 93 FLQIEGNFKFKNISHKDYLGSILSLGIKREKIGDIIIH-DSFCQVVVSSDICDFIIVNLE 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
KV +V I + + K +S R+D + S + +SR I+ V
Sbjct: 152 KVSRNNVIVKEISRENIVNSSSKYKEVSFTVSSDRLDCVISGIYNISRQDSAKYINGEKV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 231
VN+ +T ++ D++S+ GKGR K+ +I + T+KGK V+
Sbjct: 212 HVNYEKITSTSKIVKNDDLISIRGKGRAKVTQIGDITKKGKIKVQ 256
>gi|427704338|ref|YP_007047560.1| photosystem II S4 domain-containing protein [Cyanobium gracile PCC
6307]
gi|427347506|gb|AFY30219.1| photosystem II S4 domain protein [Cyanobium gracile PCC 6307]
Length = 257
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 2/223 (0%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
S FL V +E+ L L+++ ++GG+P AER L + + P ++ L I+G
Sbjct: 36 SGFLEAAVREEAEDRLGALSELTLASEGGHPGAERRCLLLARSGQEPTAPALLG-LEISG 94
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
NF F P S D + G+G ++GD+ L+G++GAQ +V LA L + V V
Sbjct: 95 NFLFDPASAADMAEGLAGSGATAAELGDLWLRGDRGAQAIVSEALARRLDGTEGLVRTVP 154
Query: 134 VSCTRIPLLALEYEPPR-TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
V P+ AL+ R + T+EASLR+DALASAGF LSR+++ LI G VR++WT
Sbjct: 155 VRFEARPIEALQLPARRLPRQLTTVEASLRLDALASAGFGLSRNRMATLIRQGAVRLDWT 214
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
V+ L G V + G+G +++ I T++ +F + L ++
Sbjct: 215 VVSSPSQPLAVGARVQLEGRGELEVLAIEPTKRERFRIRLERH 257
>gi|220928051|ref|YP_002504960.1| RNA-binding S4 domain-containing protein [Clostridium
cellulolyticum H10]
gi|219998379|gb|ACL74980.1| RNA-binding S4 domain protein [Clostridium cellulolyticum H10]
Length = 260
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 17/227 (7%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS-- 70
+SDFL+P S L+++ +V GGY AER ++V + + D +S
Sbjct: 36 YSDFLSPYEASVSKKILDRVKEVFYKLTGGYDGAERV-ITVISNDFIEEDIPYSTPISLL 94
Query: 71 ----ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
+T N SH D+LGS+LG GI REKIGDI++ EK V+ ++A+Y+ +L
Sbjct: 95 RISPVTEN----KLSHRDYLGSLLGLGIKREKIGDILV-SEKCTDVFVIDKIAEYISYNL 149
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTK--SFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+K+GN V C + ++ PP+ K S T ASLR D++AS+GF LSR+K+++
Sbjct: 150 DKIGNTKVHCELCDIY--QFTPPQKKVRSINTTVASLRADSVASSGFGLSRTKVMDYFKA 207
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
V VNW V L GD++S+ G GRI + ++ +TRK + ++
Sbjct: 208 QKVNVNWELVQSPSKMLTEGDVISIRGMGRIVLEKVLGNTRKDRISI 254
>gi|337748291|ref|YP_004642453.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|336299480|gb|AEI42583.1| RNA-binding S4 domain protein [Paenibacillus mucilaginosus KNP414]
Length = 260
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 6/226 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSI 71
+DFL P + + DV+ + GG+P AER R V P+ L S+ + LSI
Sbjct: 36 TDFLDPRQAFILTTLVNRSMDVQLLLNGGHPSAERRRAWVA-PDYRVLESEDPGITLLSI 94
Query: 72 TG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
T + + HGD++G+IL GI REK+GDI ++ + G LV E+ADY +L +V
Sbjct: 95 TSPDEKLEDLDHGDYMGAILSLGIKREKVGDIHVRPD-GCHILVASEIADYFRLNLSQVH 153
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V V +PL L++ + + + ASLR+D + S ++LSR+K++ I G +VN
Sbjct: 154 RVHVMTEVLPLERLQFTEVKFEELQLSVASLRLDGIVSDVYRLSRAKVLVPIKAGRCKVN 213
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
W LR GD+VS+ G GR K+ EI T+KG+ V++ +Y
Sbjct: 214 WKQEEDPSKPLREGDVVSLQGAGRFKVLEIEGVTKKGRTRVKIGKY 259
>gi|403379008|ref|ZP_10921065.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. JC66]
Length = 259
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 123/235 (52%), Gaps = 5/235 (2%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SD 62
+A R EV +DFL P + + VK GG +AER R + P+ L ++
Sbjct: 26 KAEHRHEVRLTDFLDPRQAYVVSTLVNRTTQVKLHLSGGSDEAERKRAWIA-PDYLHPAE 84
Query: 63 PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
D + L++ + HGD++G++LG G+ R+KIGDI +Q E G +++ E+ DY
Sbjct: 85 TDFSMCVLAVDAGEEGRALDHGDYMGAVLGLGLKRDKIGDIHVQ-ESGCHYVIAQEVGDY 143
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
L L +V + V +PL L+ + + ASLR+DAL FK+SR+K +
Sbjct: 144 LNLHLRQVHRIHVHTELLPLSELKPTTSKLEEMSFTVASLRLDALVGDVFKMSRAKALQP 203
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
I G +VNW T L TGD+VS+ G GR K+ E T+KG+ +++ +Y
Sbjct: 204 IKAGHCKVNWKEEPDPSTLLETGDLVSLKGYGRFKVMETEGMTKKGRIRIKIGRY 258
>gi|317969027|ref|ZP_07970417.1| RNA-binding S4 [Synechococcus sp. CB0205]
Length = 260
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 130/231 (56%), Gaps = 3/231 (1%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A +A E + S FL +L+E+ L L ++ + GG+PQAER RL + E
Sbjct: 23 LAEQALRTWEPVWSYFLAADLLEEAQERLGSLTELTLSSDGGWPQAERRRLLLRRVEISD 82
Query: 61 SD-PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
++ P+ + L ITGNF F P D ++ G +GDI ++G++GAQ ++ E+
Sbjct: 83 AERPEAPLQGLVITGNFLFDPAEPLDVRQGLIQAGAQAGDLGDIWMRGDRGAQLILRQEV 142
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSK 177
A+ V +V +S + + AL+ RT K ++EASLR+DA+ASAG +SRSK
Sbjct: 143 AEAWGGRTALVRSVEISTEAVAVSALQLPASRTPKQLSSVEASLRLDAVASAGLGVSRSK 202
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKF 228
+ + I G VRVNW+ +T L+ GD V + G+G ++I EI T++ ++
Sbjct: 203 MADWIRAGAVRVNWSVITSPSRELKQGDRVRLDGRGELEILEIQPTKRERW 253
>gi|284048331|ref|YP_003398670.1| RNA-binding S4 domain-containing protein [Acidaminococcus
fermentans DSM 20731]
gi|283952552|gb|ADB47355.1| RNA-binding S4 domain protein [Acidaminococcus fermentans DSM
20731]
Length = 265
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 128/238 (53%), Gaps = 4/238 (1%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A+ A R S FL P + + V+ GG+ AER +++ E
Sbjct: 30 LAKGARKSRRARVSGFLDPHGQNVAEIVAANYPQVRYEMNGGFQNAERQKVAF-IAEDFY 88
Query: 61 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
PD + AL I + + H D LG+ +G G RE +GDI+ E GAQ V +
Sbjct: 89 GQPDFAITALEILWDKRYYDIGHRDVLGAFMGLGCKREILGDIVFIDE-GAQLAVDTPMV 147
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
D+++++L K+G +V IPL L+ + + K A+LR+DA+A++G+ +SRS++
Sbjct: 148 DFILSNLTKIGAATVEVKVIPLEDLKEKEQKIKLISATVAALRLDAVAASGYGVSRSRMA 207
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
+ I +V++NW T++ GD++S +GR+++ E+ +T+KG++A+ L +Y+
Sbjct: 208 DEIKGQNVKLNWQEAKSPSQTVKEGDVISFRSRGRVELAEVRGTTKKGRYAITLKRYI 265
>gi|260887802|ref|ZP_05899065.1| S4 domain protein [Selenomonas sputigena ATCC 35185]
gi|330838698|ref|YP_004413278.1| RNA-binding S4 domain protein [Selenomonas sputigena ATCC 35185]
gi|260862478|gb|EEX76978.1| S4 domain protein [Selenomonas sputigena ATCC 35185]
gi|329746462|gb|AEB99818.1| RNA-binding S4 domain protein [Selenomonas sputigena ATCC 35185]
Length = 261
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 2/197 (1%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 100
GGY AER R H + + +A + F SH D LG+I+G G+ RE IG
Sbjct: 66 GGYAGAERQRAVFQHEDFRGTPSWEIAVVEAVWKDAFAHISHRDVLGAIMGLGVEREIIG 125
Query: 101 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 160
DI +Q + A+ + V +AD+L+T+ + G V+C+ L AL R K + AS
Sbjct: 126 DIQIQ-QGAARIVTVENMADFLLTNCVQFGAAHVTCSLGELSALLPREERCKEIRATVAS 184
Query: 161 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 220
LR D++A+AGF +SRS+ I+ +++NW +V ++ GD++S+ G+GR+++ EI
Sbjct: 185 LRADSIAAAGFGMSRSRAAADIAAEKLKLNWQSVKSASQAVKEGDVLSMRGRGRLEVKEI 244
Query: 221 N-STRKGKFAVELIQYL 236
T+KG+ +V L +YL
Sbjct: 245 RGQTKKGRISVLLHRYL 261
>gi|329922640|ref|ZP_08278192.1| S4 domain protein [Paenibacillus sp. HGF5]
gi|328941982|gb|EGG38265.1| S4 domain protein [Paenibacillus sp. HGF5]
Length = 261
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 130/237 (54%), Gaps = 10/237 (4%)
Query: 5 ASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--ALT 60
A E +DFL P + ES+ + + DV AV GG+ AER R + P+ AL
Sbjct: 28 AGQYHETKLTDFLDPRQRFILESL--VNRHPDVHAVFDGGHADAERVRAMIA-PDYRALE 84
Query: 61 SDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+ ++ LSI+ G+ F HGD++GSILG GI R KIGDI + + G +V +++
Sbjct: 85 GEDLMMKVLSISSGDQKFLELEHGDYMGSILGLGIKRSKIGDIHVLAD-GCHAVVADDIS 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+L +L +V V V +PL L+ ++ +S+R+D +AS +++SR+K+V
Sbjct: 144 AFLHLNLSQVHRVHVMTDLLPLDKLQVARTNFEAMDITVSSMRLDGIASDAYRISRTKIV 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
I G RVNW T L+ GD+VS+ G GR K+ E T+KG++ +++ +Y
Sbjct: 204 VPIKAGRCRVNWKVEEDPSTNLKEGDVVSIQGFGRFKVLETGGLTKKGRYRIKVGKY 260
>gi|354582307|ref|ZP_09001209.1| RNA-binding S4 domain protein [Paenibacillus lactis 154]
gi|353199706|gb|EHB65168.1| RNA-binding S4 domain protein [Paenibacillus lactis 154]
Length = 260
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 125/240 (52%), Gaps = 14/240 (5%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPE--A 58
A EV +DFL P LE L DV A +GGY AER R + P+
Sbjct: 27 AGQYHEVKLTDFLDP----RQRFILETLVNRHPDVHAAFEGGYADAERVRAIIA-PDYRE 81
Query: 59 LTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
L + + LSIT G+ HGD++GSILG GI R KIGDI + E G +V E
Sbjct: 82 LDGEDFKIKVLSITSGDQKLLELEHGDYMGSILGLGIKRSKIGDIHVI-ESGCHAVVSEE 140
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+ +L +L +V V V +P+ L+ + ++ +SLR+D +AS ++SR+K
Sbjct: 141 IGSFLNLNLSQVHRVHVMTELLPMDKLQAAETKLETMDITVSSLRLDGIASDAHRISRTK 200
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
+V I G RVNW T L+ GD+VS+ G GR + EI T+KG++ V++ +Y+
Sbjct: 201 IVVPIKAGRCRVNWKVEEDPSTNLKEGDVVSIQGMGRFAVLEIGGLTKKGRYRVKVGKYV 260
>gi|375309381|ref|ZP_09774662.1| RNA-binding s4 domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375078690|gb|EHS56917.1| RNA-binding s4 domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 260
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 8/228 (3%)
Query: 14 SDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 70
+DFL P L E++ + E ++ GGY +ER R + + D D+ + LS
Sbjct: 36 TDFLDPRQLYILETLSSKEDKVTIRL--DGGYEASERKRALIAPDYSYLDDEDMGIRVLS 93
Query: 71 ITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
I+ + HGD+LG+ILG GI R KIGDI + + G LV E++D+++ L++V
Sbjct: 94 ISSDDHKISTLEHGDYLGAILGLGIKRGKIGDIHVL-DDGCHVLVASEISDFIMLHLQQV 152
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V V +P +L + + ASLR+D +AS +KLSRSK++ I G RV
Sbjct: 153 HRVHVWTELLPSESLRTKEAELEPLDLTVASLRLDGIASDVYKLSRSKILTPIRAGRCRV 212
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
NW T+L+ GD+VS+ G GR K+ E + T+KG+F V++ +++
Sbjct: 213 NWKVEENPSTSLKVGDVVSMQGFGRFKVLETDGMTKKGRFRVKIGKFV 260
>gi|258646841|ref|ZP_05734310.1| S4 domain protein [Dialister invisus DSM 15470]
gi|260404278|gb|EEW97825.1| S4 domain protein [Dialister invisus DSM 15470]
Length = 263
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF 75
F++P + + V GGY +AER R++ + + AL +T +
Sbjct: 43 FMSPFAAQVGQTIAAHMKTVAVKTSGGYHEAERIRVAFARNDYDGLVDFGLTALKVTWDD 102
Query: 76 GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 135
++ H D LG+++G GI R +GDI++QG G Q + +A+++ + KV VSV
Sbjct: 103 RYRLIGHRDVLGALMGLGIDRAVLGDILMQGA-GCQIVADSSMAEWIKRNFLKVAMVSVQ 161
Query: 136 CTRIPLLALEYEPPR--TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
I L E EPP+ + + ASLR+DA+ +AGF +SRSK+V + +G +NW
Sbjct: 162 IKEISLE--ELEPPKKTAREVRATVASLRLDAVGAAGFGISRSKMVQCVESGRTEINWQP 219
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
V T++ GD++S+ GKGRI+I E+ +RKG+ + + +Y
Sbjct: 220 VKSASQTIKAGDVISIRGKGRIEIREVTGMSRKGRTGLLIDRY 262
>gi|333897310|ref|YP_004471184.1| RNA-binding S4 domain-containing protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112575|gb|AEF17512.1| RNA-binding S4 domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 247
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 133/245 (54%), Gaps = 19/245 (7%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
M R +DFL+ K + ++K D+ GG+ +AER +++ +P L
Sbjct: 11 MINWVQKNRRDRFTDFLSMKDQKILLKLIDKHDDIDCRFDGGFKEAER-KIACIYPSFLA 69
Query: 61 -SDP---DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 116
SD D + + I G+ SH D LGS+LG GI REKIGDII + E +V
Sbjct: 70 ISDGEHFDAIKGIRINGDL--IRLSHRDVLGSLLGLGIKREKIGDIIKRQEI-CDVIVHR 126
Query: 117 ELADYLITSLEKVGNVSVSCTRIPLL-----ALEYEPPRTKSFKTIEASLRVDALASAGF 171
++AD+++ +L+K+G V + I L +EYE KT AS+R+D++ +AGF
Sbjct: 127 DIADFVLMNLKKIGREKVIVSSIDLDEVIEPVIEYE-----DIKTTVASVRLDSIIAAGF 181
Query: 172 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
K+SR+K +LI G VNW T ++ GDI+S+ G GRIK EI ++RKG+ V
Sbjct: 182 KISRTKASDLIKAGLTEVNWETNISPSFEVKEGDIISLRGYGRIKFQEILGTSRKGRVYV 241
Query: 231 ELIQY 235
+++Y
Sbjct: 242 HILKY 246
>gi|383753717|ref|YP_005432620.1| hypothetical protein SELR_08890 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365769|dbj|BAL82597.1| hypothetical protein SELR_08890 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 264
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 3/225 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAALSIT 72
S FL P + + +++ GGY AER R H + A T + +
Sbjct: 41 SGFLDPFGQEIAETVAANYGNIRVDFAGGYQGAERARAIFIHEDFAGTPTSFGIDCIEAK 100
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
N F SH D LG+++G GI R+ IGD+++ + + + ++AD+L+ +L+K+G V
Sbjct: 101 WNGQFARLSHRDVLGALMGQGIERDTIGDLLVTNDS-VKIICEEKMADFLLANLDKIGAV 159
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
V C R L ++ + R K + ASLRVD++A+AGF SRSK + I+ +++NW
Sbjct: 160 GVECQRADLSSIAPKEERCKEIRATVASLRVDSIAAAGFGSSRSKAASDIAADKLKINWQ 219
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
++ GDI+S+ G+GR+++ E+ +T+KG+ V L +YL
Sbjct: 220 PAKSASQNVKEGDILSMRGRGRLEVAEVRGTTKKGRTVVVLKRYL 264
>gi|390453149|ref|ZP_10238677.1| RNA-binding s4 domain-containing protein [Paenibacillus peoriae
KCTC 3763]
Length = 260
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 8/228 (3%)
Query: 14 SDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 70
+DFL P L E++ + E ++ GGY +ER R + + D D+ + LS
Sbjct: 36 TDFLDPRQLYILETLSSKEDKVTIRL--DGGYEASERKRALIAPDYSYLDDEDMGIRVLS 93
Query: 71 ITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
I+ + HGD+LG+ILG GI R KIGDI + + G LV E++D++ L++V
Sbjct: 94 ISSDDQKIGTLEHGDYLGAILGLGIKRGKIGDIHVL-DDGCHVLVASEISDFITLHLQQV 152
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V V +PL +L + + ASLR+D +AS +KLSRSK++ I G RV
Sbjct: 153 HRVHVWTELLPLESLRTKEAELEPLDLTVASLRLDGIASDVYKLSRSKILTPIRAGRCRV 212
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
NW T+L+ GD++S+ G GR K+ E + T+KG+F V++ +++
Sbjct: 213 NWKVEENPSTSLKVGDVISMQGFGRFKVLETDGMTKKGRFRVKIGKFV 260
>gi|374308765|ref|YP_005055196.1| S4 domain-containing protein [Filifactor alocis ATCC 35896]
gi|291167097|gb|EFE29143.1| S4 domain protein [Filifactor alocis ATCC 35896]
Length = 263
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 8/225 (3%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDIVAA 68
EV HSDFLTP +E L + DV+ G Q+ER +S+ +P+ L S DI+
Sbjct: 37 EVKHSDFLTPYEQRELASVLNGIYDVRYSFDGMSEQSERKIVSI-YPDYLEESCQDILVC 95
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
L ITGN F SH D+LGSILG G+ REKIGDI + + GA + + +ADY+ LEK
Sbjct: 96 LKITGNTQFSKLSHRDYLGSILGLGLRREKIGDIFVVKD-GAYIVCLQSVADYICFHLEK 154
Query: 129 VGNVSVSCTRIPL--LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
V NVSV R+ +AL + R F + +S+R+D++ + F LSR+ +L+
Sbjct: 155 VKNVSVKVNRVEKDEIALPKQEKRECEF--VVSSIRLDSIVAGMFHLSRNDAKSLVQKEL 212
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
V V++ ++ L ++SV G G+ E+ T+K ++ +
Sbjct: 213 VSVDYEVISNPSKILEPPSVISVRGFGKGTFEEVLYQTKKDRYKL 257
>gi|255659719|ref|ZP_05405128.1| S4 domain protein [Mitsuokella multacida DSM 20544]
gi|260848293|gb|EEX68300.1| S4 domain protein [Mitsuokella multacida DSM 20544]
Length = 264
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 114/198 (57%), Gaps = 3/198 (1%)
Query: 41 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GGY AER R H + A T +A L + N F SH D LG+++G GI R+++
Sbjct: 68 GGYQGAERARAMYIHEDFAGTPSGFDIACLKASWNGQFARLSHRDVLGALMGLGIERDRL 127
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GD+++ + + L ++A+YL+ +L K+G V VSC L + R K + A
Sbjct: 128 GDLLVTADS-VRILCDSKMAEYLLQNLTKIGAVGVSCEMADLAGIAPREERCKEIRATVA 186
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+D++A++GF SRS+ I+ +++NW V T++ GDI+S+ G+GR+++ E
Sbjct: 187 SLRIDSIAASGFGSSRSRAAADIAADKMKLNWQPVKSASQTVKEGDIISMRGRGRLEVAE 246
Query: 220 IN-STRKGKFAVELIQYL 236
+ T+KG+ V L +Y+
Sbjct: 247 VRGQTKKGRTVVVLKRYI 264
>gi|315646047|ref|ZP_07899168.1| RNA-binding S4 domain protein [Paenibacillus vortex V453]
gi|315278808|gb|EFU42122.1| RNA-binding S4 domain protein [Paenibacillus vortex V453]
Length = 260
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 8/227 (3%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 70
+DFL P + ES+ + + DV A+ QGG+ AER R + D+ + LS
Sbjct: 36 TDFLDPRQRFILESL--VNRHPDVHALFQGGHADAERVRALIAPDYRDLEGEDLKMKVLS 93
Query: 71 IT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
I+ G+ F HGD++GSILG GI R KIGDI + E G +V +++ +L +L +V
Sbjct: 94 ISSGDQKFLELDHGDYMGSILGLGIKRSKIGDIHVL-EDGCHTVVAEDISSFLHLNLSQV 152
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V V +PL L+ + +S+R+D +AS +++SR+K+V I G RV
Sbjct: 153 HRVHVMTELLPLDKLQVTHTNFDTMDITASSMRLDGIASDAYRISRTKIVVPIKAGRCRV 212
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
NW T L+ GD+VS+ G GR K+ E T+KG++ +++ +Y
Sbjct: 213 NWKVEEDPSTNLKEGDVVSIQGFGRFKVLETGGLTKKGRYRIKVGKY 259
>gi|310642972|ref|YP_003947730.1| RNA-binding s4 domain-containing protein [Paenibacillus polymyxa
SC2]
gi|309247922|gb|ADO57489.1| RNA-binding S4 domain-containing protein [Paenibacillus polymyxa
SC2]
gi|392303787|emb|CCI70150.1| putative RNA-binding protein ylmH [Paenibacillus polymyxa M1]
Length = 260
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 8/228 (3%)
Query: 14 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 70
+DFL P + E++ + E ++ GGY +ER R + + D ++ + LS
Sbjct: 36 TDFLDPRQQYILETLASKEDKVTIRV--DGGYTASERKRALIAPDYSYLDDEEMGIQVLS 93
Query: 71 ITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
I+ + HGD+LG+ILG GI R KIGDI + + G LV E+ D++ L++V
Sbjct: 94 ISSDDHKINTLEHGDYLGAILGLGIKRGKIGDIHVL-DDGCHVLVASEIGDFITMHLQQV 152
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V V +P+ +L + ++ ASLR+D +AS +KLSRSK++ I G RV
Sbjct: 153 HRVHVWTELLPVASLRTKEVALEAMDLTVASLRLDGIASDVYKLSRSKILTPIRAGRCRV 212
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
NW T+L+ GD++S+ G GR K+ E + T+KG+F V++ +++
Sbjct: 213 NWKVEENPSTSLKVGDVISMQGFGRFKVLETDGMTKKGRFRVKIGKFV 260
>gi|124026489|ref|YP_001015604.1| S4-like domain-containing protein [Prochlorococcus marinus str.
NATL1A]
gi|123961557|gb|ABM76340.1| Uncharacterized conserved protein, contains S4-like domain
[Prochlorococcus marinus str. NATL1A]
Length = 262
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 6/239 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
A +A S R + S F++ +++E L D+ + +GG+P AER R+
Sbjct: 24 FAEKALSERAAIWSPFISAQLIEEVKNRFNNLNDISLIFEGGFPSAERKRICFLRSVEEM 83
Query: 61 SDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
P I + + I GNF F DF + + IGDI L ++GAQ + +
Sbjct: 84 HSPSIEIPIKGIYIKGNFLFDRAKQNDFRDLLYELHAQADDIGDIWLIRDRGAQAICTKK 143
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALE--YEPPRTKSFKTIEASLRVDALASAGFKLSR 175
AD + + K+ V ++ + L +E + P+ K T+EAS R+DA+ASAGF LSR
Sbjct: 144 CADSINQKIGKLREVEITIHALDLNEMEIPFNRPK-KVINTVEASTRIDAIASAGFGLSR 202
Query: 176 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 234
SK++ I G +R+NW + ++ GD++ + KG +KI I+ T+K ++ ++L++
Sbjct: 203 SKVIKQIKEGCLRLNWALNEQPSKSVNIGDLIHLDKKGSLKILNIDKTKKERWRIKLLR 261
>gi|402833534|ref|ZP_10882147.1| S4 domain protein [Selenomonas sp. CM52]
gi|402280027|gb|EJU28797.1| S4 domain protein [Selenomonas sp. CM52]
Length = 261
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 113/198 (57%), Gaps = 4/198 (2%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 100
GGY AER R H + + +A + F SH D LG+I+G G+ RE IG
Sbjct: 66 GGYAGAERQRAVFQHEDFRGTPSWEIAVVEAQWKDAFAHISHRDVLGAIMGLGVEREIIG 125
Query: 101 DIILQGEKGAQFLVVPE-LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
DI +Q +GA +V E +AD+L+T+ + G V+C+ L AL R K + A
Sbjct: 126 DIQIQ--QGAARIVTAENMADFLLTNCVQFGAAHVTCSLGELSALLPREERCKEIRATVA 183
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR D++A+AGF +SRS+ I+ +++NW +V ++ GD++S+ G+GR+++ E
Sbjct: 184 SLRADSIAAAGFGMSRSRAAADIAAEKLKLNWQSVKSASQAVKEGDVLSMRGRGRLEVKE 243
Query: 220 IN-STRKGKFAVELIQYL 236
I T+KG+ +V L +YL
Sbjct: 244 IRGQTKKGRISVLLHRYL 261
>gi|366166912|ref|ZP_09466667.1| RNA-binding S4 protein [Acetivibrio cellulolyticus CD2]
Length = 263
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 126/227 (55%), Gaps = 5/227 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA-LTSDPDIVAALSI- 71
+DFL P + LE + GGY AER ++ L +P++ +
Sbjct: 38 TDFLDPHLQSVVSKCLESNNVGNYLFYGGYDGAERAVVAFCPSNMPLIQEPELAGLFKVL 97
Query: 72 -TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ +H D+LGS++G GI REKIGDI+++ E + + + ++AD++ +L+KVG
Sbjct: 98 KISLMHRENMTHRDYLGSLMGLGIKREKIGDILVKDEH-SLVVALNDIADFIRHNLDKVG 156
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
NV V + + +L + K +T ASLR+D++ASAGF +SRSK+ + I V +N
Sbjct: 157 NVKVEVEYLDVESLNTYEQKVKEIRTTVASLRLDSVASAGFGMSRSKIADFIKAEKVNLN 216
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
W T ++ GD++S+ GKGR+ + EI +TRK + +V L +++
Sbjct: 217 WETTPSLTKLVKEGDLISIRGKGRVVLQEIGKTTRKDRISVCLKKFI 263
>gi|375084577|ref|ZP_09731440.1| hypothetical protein HMPREF9454_00051 [Megamonas funiformis YIT
11815]
gi|374568025|gb|EHR39220.1| hypothetical protein HMPREF9454_00051 [Megamonas funiformis YIT
11815]
Length = 261
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 2/229 (0%)
Query: 9 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 68
R+ +DFL P + + + + GGY AER + H + + ++
Sbjct: 34 RKFRATDFLDPYGCEIAETVVAHYDGISVDFFGGYIGAERQCANFVHEDFMGKPSYNISV 93
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
+ T N F SH D LG+++G GI RE+IGD+++ + + ++AD+++ +L +
Sbjct: 94 VKATWNDKFYRLSHRDVLGALMGLGIKREQIGDLLIT-LGMVKIICTTKMADFILQNLTQ 152
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
+G+ VSC L + R K + ASLR+D++A++GF SRSK+ ++I ++
Sbjct: 153 IGSAKVSCELDNLETIAPREERCKEITSTVASLRIDSIAASGFGASRSKMSSMIDAEKLK 212
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
+NW TV ++ GDI+S+ G+GR+++ E+ +T+KG+ V L +YL
Sbjct: 213 LNWQTVKSASQMVKQGDIISIRGRGRLEVAEVRGTTKKGRTVVLLKRYL 261
>gi|390935121|ref|YP_006392626.1| RNA-binding S4 domain-containing protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570622|gb|AFK87027.1| RNA-binding S4 domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 247
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 129/232 (55%), Gaps = 19/232 (8%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT----SDPDIVAAL 69
+DFL+ K + + K D+ GG+ +AER +++ +P L +++ +
Sbjct: 24 TDFLSMKDQKILLKLIAKHDDIDCRFDGGFKEAER-KIACIYPSLLPIYDGEHFNVIKGI 82
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
I G+ SH D LGS+LG GI REKIGDII + E +V ++ADY++ +L+KV
Sbjct: 83 RINGDL--TKLSHRDVLGSLLGLGIKREKIGDIIKRQEI-CDVIVHNDIADYVLMNLKKV 139
Query: 130 GNVSVSCTRIPLL-----ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
G V + I L +EYE KT AS+R+D++ ++GFK+SR+K +I
Sbjct: 140 GREKVIVSSIDLDEVIEPVIEYE-----DIKTTVASIRLDSIVASGFKISRTKASEMIKA 194
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
G VNW T ++ GDI+S+ G GRIK+ E+ ++RKG+ V +++Y
Sbjct: 195 GLTEVNWETNMSPSFEVKEGDIMSLRGYGRIKLQEVLGTSRKGRVYVHILKY 246
>gi|402815868|ref|ZP_10865460.1| putative RNA-binding protein YlmH [Paenibacillus alvei DSM 29]
gi|402506908|gb|EJW17431.1| putative RNA-binding protein YlmH [Paenibacillus alvei DSM 29]
Length = 263
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 122/243 (50%), Gaps = 20/243 (8%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 63
RA+ E+ +DFL P + + ADV+ GG+ AER R + P
Sbjct: 28 RAAQLHEIRRTDFLDPRQAFILTTLVNRNADVQLRLDGGHEHAERKRALIA--------P 79
Query: 64 DIVAA---------LSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 113
D V A L IT + ++ HGDFLG++LG GI R+KIGDI + ++ +
Sbjct: 80 DYVYAEGEEMGMHILQITSLDRNWEQLEHGDFLGAVLGLGIKRDKIGDIHVSDDR-CHIV 138
Query: 114 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 173
+ E+ +L T L +V V+V +PL L+ K ASLR+D +AS F+L
Sbjct: 139 ITEEIGAFLDTHLRQVHRVNVLTDIVPLSELQATHAELKMMTLSVASLRLDGIASDVFRL 198
Query: 174 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
SR+K+V I G +VNW T L GD+VS+ G GR K+ +I ++KG+ + +
Sbjct: 199 SRTKIVTPIKAGRCKVNWKVEENPSTQLHAGDVVSLQGFGRFKVIDIEGVSKKGRMRISV 258
Query: 233 IQY 235
Y
Sbjct: 259 GTY 261
>gi|304316676|ref|YP_003851821.1| RNA-binding S4 domain-containing protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778178|gb|ADL68737.1| RNA-binding S4 domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 246
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 132/239 (55%), Gaps = 8/239 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--- 57
+A+ + ++DFL+ K + + + D+ GG+ AER +++ +P+
Sbjct: 11 IAKWVQKNKRDRYTDFLSLRDQKILLKLMTQFDDINCGFIGGFDAAER-KIAHIYPKFRN 69
Query: 58 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
A+ + ++A+ I G+ SH D LGSILG GI R+K+GDII + E +V +
Sbjct: 70 AVDAYKAPISAIRINGDLS--KLSHRDVLGSILGLGIKRDKVGDIIKRQE-SCDIVVHND 126
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+A Y++ +L K+G V+ I L + + T AS+R+D++ ++GFKLSR+K
Sbjct: 127 IASYILINLHKIGKERVNVYSINLDEIMEPEVKYDDINTTVASIRLDSIIASGFKLSRTK 186
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 235
LI G VNW T + ++ GDIVS+ G+GRIK E I +T+KG+ + +++Y
Sbjct: 187 ASELIKAGLAEVNWETKLEPSFEIKEGDIVSLRGRGRIKFEEIIGTTKKGRIYIHILKY 245
>gi|253576145|ref|ZP_04853477.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844488|gb|EES72504.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 261
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 128/240 (53%), Gaps = 14/240 (5%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEA-- 58
A EV SDFL P LE LA D + GGY AER R + P+
Sbjct: 28 AGDYHEVKLSDFLDP----RQCYILETLANRHPDTQIRLDGGYEGAERRRALIA-PDYRD 82
Query: 59 LTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
L+ +P + L IT G+ F HGD+LG+ILG G+ R+KIGDI ++ E G +V E
Sbjct: 83 LSQEPMGLKVLDITSGDQKFLALQHGDYLGAILGLGLKRDKIGDIHVR-EDGCHVIVAEE 141
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+A +L +L +V V+V + L L + + ASLR+D +AS F+LSR+K
Sbjct: 142 IAPFLQMNLHQVHRVNVMTDVLNLSELRTMEKELEPMELTVASLRLDGIASDVFRLSRNK 201
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
++ I G RVNW T T L+ GD+V++ G GR K+ E T+KG+ V++ +++
Sbjct: 202 VLLPIKAGRCRVNWRTEEDPSTPLKVGDVVALQGFGRFKVLEAGGLTKKGRHRVKIGKFV 261
>gi|433654813|ref|YP_007298521.1| hypothetical protein Thethe_01171 [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293002|gb|AGB18824.1| hypothetical protein Thethe_01171 [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 247
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 132/240 (55%), Gaps = 9/240 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A+ + ++DFL+ K + +++ D+ GG+ +AER +++ +P+
Sbjct: 11 IAKWVQKNKRDRYTDFLSMREQKILLKLIKQFDDINCRFDGGFEKAER-KMAHIYPKFKN 69
Query: 61 SDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 116
+ + ++ A+ I+G+ SH D LGSILG GI R+K+GDII + E +V
Sbjct: 70 VEDETHIVLLNAIRISGDLS--KLSHRDVLGSILGLGIKRDKVGDIIKRQE-NCDVIVHN 126
Query: 117 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 176
++ Y++ +L K+G V+ I L + + T AS+R+D++ ++GFK+SR+
Sbjct: 127 DIVGYILMNLNKIGKERVNVNSIELDEVMEPEIKYDDINTTVASIRLDSIVASGFKISRT 186
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 235
K +I G VNW T + ++ GDIVS+ G GRIK E I +T+KG+ + +++Y
Sbjct: 187 KASEMIKAGLAEVNWETKLEPSFEIKEGDIVSLRGHGRIKFEEIIGTTKKGRIYIHILKY 246
>gi|261405680|ref|YP_003241921.1| RNA-binding S4 domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261282143|gb|ACX64114.1| RNA-binding S4 domain protein [Paenibacillus sp. Y412MC10]
Length = 261
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 129/237 (54%), Gaps = 10/237 (4%)
Query: 5 ASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--ALT 60
A E +DFL P + ES+ + + DV A+ GG+ AER R + P+ AL
Sbjct: 28 AGQYHETKLTDFLDPRQRFILESL--VNRHPDVHALFDGGHADAERVRAMIA-PDYRALE 84
Query: 61 SDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+ + LSI+ G+ F HGD++GSILG GI R KIGDI + + G +V +++
Sbjct: 85 GEDLKMKVLSISSGDQKFLELEHGDYMGSILGLGIKRSKIGDIHVLAD-GCHAVVADDIS 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+L +L +V V V +PL L+ ++ +S+R+D +AS +++SR+K++
Sbjct: 144 AFLHLNLSQVHRVHVMTDLLPLDKLQVARTNFEAMDITVSSMRLDGIASDAYRISRTKII 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
I G RVNW T L+ GD+VS+ G GR K+ E T+KG++ +++ +Y
Sbjct: 204 VPIKAGRCRVNWKVEEDPSTNLKEGDVVSIQGFGRFKVLETGGLTKKGRYRIKVGKY 260
>gi|72382767|ref|YP_292122.1| RNA-binding S4 [Prochlorococcus marinus str. NATL2A]
gi|72002617|gb|AAZ58419.1| RNA-binding S4 [Prochlorococcus marinus str. NATL2A]
Length = 262
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 4/238 (1%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
A +A S R + S FL+ +++E L D+ + +GG+P AER R+
Sbjct: 24 FAEKALSERTAIWSPFLSAQLIEEVKDRFNNLNDISLLFEGGFPSAERKRICFLRSVEEM 83
Query: 61 SDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
P I + + I GNF F DF I + IGDI L ++GAQ + +
Sbjct: 84 HSPSIEIPIKGIYIKGNFLFDRAKQSDFRDLIHELHDQADDIGDIWLIRDRGAQAICTKK 143
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPR-TKSFKTIEASLRVDALASAGFKLSRS 176
AD + + K+ V + + L +E R K T+EAS R+DA+ASAGF LSRS
Sbjct: 144 CADSINQKIGKLREVEIIIHALDLNEMEIPFNRPEKVINTVEASTRIDAIASAGFGLSRS 203
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 234
K++ I G +R+NW + ++ GD++ + KG +KI I+ T+K ++ ++L++
Sbjct: 204 KIIKQIKEGCLRLNWALNDQPSKSVNIGDLIHLEKKGSLKILNIDKTKKERWRIKLLR 261
>gi|227509386|ref|ZP_03939435.1| ribosomal protein S4e [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227191098|gb|EEI71165.1| ribosomal protein S4e [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 264
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 111/220 (50%), Gaps = 5/220 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
++FL P L + + + GGY AE R ++ +PE T D + A I
Sbjct: 38 TEFLNPRQLYILESIINRHDGIHFSTYGGYSGAELQR-AIVYPEYFTPKTDDFRITAFEI 96
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +HG LGS++G GI R +GDII G K QF+V E+ADY+ ++ +G
Sbjct: 97 DYPSKFATLAHGKILGSLMGAGIERNVVGDIITDGLKW-QFMVQSEMADYVKAQVDHIGK 155
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
+ V I + +++ T +SLRVDAL S GF +SR L+ GDVR+NW
Sbjct: 156 IKVKLEDISPEGVITPVDESETLTTTVSSLRVDALISDGFHISRHHAKELVDAGDVRINW 215
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
T+ L T DI+SV G GRI I EI T+K K +
Sbjct: 216 VDTTRPDFELSTKDIISVRGYGRIVIKEITGMTKKDKIRI 255
>gi|332798174|ref|YP_004459673.1| RNA-binding S4 domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|438001091|ref|YP_007270834.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Tepidanaerobacter acetatoxydans Re1]
gi|332695909|gb|AEE90366.1| RNA-binding S4 domain protein [Tepidanaerobacter acetatoxydans Re1]
gi|432177885|emb|CCP24858.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Tepidanaerobacter acetatoxydans Re1]
Length = 254
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 7/227 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP--DIVAALSI 71
S+FL P + + M + GGY +AER ++ V +PE + +P + + AL I
Sbjct: 29 SNFLDPGQQQMAEMVARSFPGMGFYFNGGYEKAER-KILVAYPEDMLDEPFREPLGALRI 87
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
+ H D+LG+IL GI REK+GDI++ G+ A +V E+ +Y+ +L+K+ N
Sbjct: 88 IPKNSDEHPGHRDYLGAILALGINREKLGDILV-GKTSADIVVKQEIMEYIGLNLKKIRN 146
Query: 132 VSVSCTRIPLLALEYEPPR-TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
VSV I L L +P R K K+ ASLR+DA+A F +SRSK+ I ++R+N
Sbjct: 147 VSVEVEEISLKEL-LQPERPYKELKSTVASLRLDAIAGIAFGISRSKMAPFIKGENIRLN 205
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
+ V ++ GDI+S + GR K+ E+ ++KG+ V++ +Y+
Sbjct: 206 FKVVKDPAALVKEGDIISANRLGRAKVVEVGGRSKKGRIYVKIHRYI 252
>gi|406026563|ref|YP_006725395.1| 30S ribosomal protein S4e [Lactobacillus buchneri CD034]
gi|405125052|gb|AFR99812.1| ribosomal protein S4e [Lactobacillus buchneri CD034]
Length = 263
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 118/237 (49%), Gaps = 6/237 (2%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT- 60
R A+ R +L +DFL P L + + V GGYP AE R +V P+
Sbjct: 26 GRVANEYRPIL-TDFLNPRQLYILETIVNRYEGVSFQTFGGYPSAELKR-AVAFPDYFVP 83
Query: 61 -SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+D + A I F SHG LGSI+G+GI R+ IGDI+ G QF+ E+A
Sbjct: 84 KADDYNITAFQIDYPSKFATLSHGQILGSIMGSGIDRDVIGDIVTDG-LNWQFMCESEMA 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
DY+ + ++++G + + +I + + T ASLRVDAL S GF +SR
Sbjct: 143 DYVQSQVDRIGKIKIKLKQIQPEEIIVPVDEGEELTTTVASLRVDALVSEGFHISRHHAK 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
LI G +R+NW + + DI+SV G GR+ + +I T+KGK + L Y
Sbjct: 203 ELIEGGMIRINWEDANRPDLEISIQDIISVRGFGRLVVQDIAGMTKKGKIRIGLKVY 259
>gi|357037201|ref|ZP_09099001.1| RNA-binding S4 domain protein [Desulfotomaculum gibsoniae DSM 7213]
gi|355361366|gb|EHG09121.1| RNA-binding S4 domain protein [Desulfotomaculum gibsoniae DSM 7213]
Length = 273
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 9/227 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DF P A+ L D+ V GGYP AER R+ + D D ++ L++
Sbjct: 47 TDFYDPYRCAMIARAMGYLPDLAVVVDGGYPAAERSRVLIFPDYMFAGDVDTGLSFLAVK 106
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
G+F F +H D+LG++LG G+ REK+GDI++ GE GAQ +V E+ D++ L VG V
Sbjct: 107 GSFRFNTVTHRDYLGALLGLGLRREKLGDILV-GEDGAQLVVAAEVVDFIKMGLTGVGRV 165
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEA---SLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V+ I E +PP + ++ I+ SLR+DA+A+ GF LSR+K+ I+ G + +
Sbjct: 166 RVTVHEIN--RAEVKPP-ARDYREIKVTVQSLRLDAVAAHGFGLSRTKMAGEIAAGKIYL 222
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
NW +R GD++S G+GR+ + + T+KG+ + L +Y
Sbjct: 223 NWRLCLDPSAPVRPGDMISARGRGRVAVEQTGGQTKKGRTNLLLHRY 269
>gi|290969124|ref|ZP_06560652.1| S4 domain protein [Megasphaera genomosp. type_1 str. 28L]
gi|335049281|ref|ZP_08542281.1| S4 domain protein [Megasphaera sp. UPII 199-6]
gi|290780844|gb|EFD93444.1| S4 domain protein [Megasphaera genomosp. type_1 str. 28L]
gi|333763554|gb|EGL40998.1| S4 domain protein [Megasphaera sp. UPII 199-6]
Length = 261
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 8/227 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV---GHPEALTSDPDIVAALS 70
SDF++P ++ + DV GGY AER R++ G+ A+ + A
Sbjct: 39 SDFVSPGAVQIGETICAQDTDVHLQCDGGYEGAERVRMAFVRNGYEGAVDFS---IRACR 95
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ + ++ +H D LGS++G G+ R K GDII+ E GA L+ + Y+ L+KV
Sbjct: 96 LVWDSRYRLLTHRDVLGSLMGLGVERAKFGDIIM-AEDGAVLLLDANMESYVQQHLQKVS 154
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V+V L + + K KT ASLR+DA+ ++GF +SR+K I V++N
Sbjct: 155 IVTVQIAPYDLKEIAPRQKKVKEIKTTVASLRLDAIVASGFGISRTKAAAAIKGERVQLN 214
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
W + + +R GD +S+ GKG++++GEI +RKG+ V L +Y+
Sbjct: 215 WQPIKSSSREVRVGDCISLRGKGKMEVGEITGISRKGRTGVLLKRYI 261
>gi|227524052|ref|ZP_03954101.1| ribosomal protein S4e [Lactobacillus hilgardii ATCC 8290]
gi|227088791|gb|EEI24103.1| ribosomal protein S4e [Lactobacillus hilgardii ATCC 8290]
Length = 264
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 111/220 (50%), Gaps = 5/220 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
++FL P L + + + GGY AE R ++ +PE T D + A I
Sbjct: 38 TEFLNPRQLYILESIINRHDGIHFSTYGGYSGAELQR-AIVYPEYFTPKTDDFRITAFEI 96
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +HG LGS++G GI R +GDII G K QF+V E+ADY+ ++ +G
Sbjct: 97 DYPSKFATLAHGKILGSLMGVGIERNVVGDIITDGLKW-QFMVQSEMADYVKAQVDHIGK 155
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
+ V I + +++ T +SLRVDAL S GF +SR L+ GDVR+NW
Sbjct: 156 IKVMLEDISPEGVIAPVDESETLTTTVSSLRVDALISDGFHISRHHAKELVDTGDVRINW 215
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
T+ L T DI+SV G GR+ I EI T+K K +
Sbjct: 216 VDTTRPDFELSTKDIISVRGYGRLVIKEITGMTKKDKIRI 255
>gi|331701066|ref|YP_004398025.1| RNA-binding S4 domain-containing protein [Lactobacillus buchneri
NRRL B-30929]
gi|329128409|gb|AEB72962.1| RNA-binding S4 domain protein [Lactobacillus buchneri NRRL B-30929]
Length = 263
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 118/236 (50%), Gaps = 6/236 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-- 60
R A+ R +L +DFL P L + + V GGYP AE R +V P+
Sbjct: 27 RVANEYRPIL-TDFLNPRQLYILETIVNRYEGVSFQTFGGYPSAELKR-AVAFPDYFVPK 84
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+D + A I F SHG LGSI+G+GI R+ IGDI+ G QF+ E+AD
Sbjct: 85 ADDYNITAFQIDYPSKFATLSHGQILGSIMGSGIDRDVIGDIVTDG-LNWQFMCESEMAD 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ + ++++G + + +I + + T ASLRVDAL S GF +SR
Sbjct: 144 YVQSQVDRIGKIKIKLKQIQPEEIIAPVDEGEELTTTVASLRVDALVSEGFHISRHHAKE 203
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
LI G +R+NW + + DI+SV G GR+ + +I T+KGK + L Y
Sbjct: 204 LIEGGMIRINWEDANRPDLEISIQDIISVRGFGRLVVQDIAGMTKKGKIRIGLKVY 259
>gi|422343049|ref|ZP_16423977.1| hypothetical protein HMPREF9432_00037 [Selenomonas noxia F0398]
gi|355379005|gb|EHG26181.1| hypothetical protein HMPREF9432_00037 [Selenomonas noxia F0398]
Length = 264
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 3/198 (1%)
Query: 41 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GGY AER R + H + A T D + ++ N F SH D LG+++G GI RE I
Sbjct: 68 GGYAGAERQRAMLRHADFAGTPDGFGIVCVAAAWNGQFARLSHRDVLGALMGLGIERESI 127
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDI L G A+ L +L+D+++ +L +G V T + RTK + A
Sbjct: 128 GDI-LPGADAAKILCDAKLSDFIVNNLTMIGAAGVKATVEDTAEIAPREERTKEIRATVA 186
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+DA+A+AGF +SRS+ + I+ V++NW + T++ GD++S+ G+GR+++ E
Sbjct: 187 SLRLDAVAAAGFGVSRSRAADDIAADKVKLNWQSAGSASKTIKEGDVLSMRGRGRVEVTE 246
Query: 220 IN-STRKGKFAVELIQYL 236
+ T+KG+ V L ++
Sbjct: 247 VRGQTKKGRTVVVLKRFF 264
>gi|348025437|ref|YP_004765241.1| S4 domain protein [Megasphaera elsdenii DSM 20460]
gi|341821490|emb|CCC72414.1| S4 domain protein [Megasphaera elsdenii DSM 20460]
Length = 261
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 112/202 (55%), Gaps = 12/202 (5%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDI-----VAALSITGNFGFQPCSHGDFLGSILGTGIA 95
GGY AER +L+ +++D D + A ++ + ++ H D LGS++ G+
Sbjct: 66 GGYEGAERVKLAF-----VSADYDGPVDFGITACRLSWDDRYRLLGHRDVLGSLMSLGVG 120
Query: 96 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 155
RE+ GDII+Q E GA L +L YL + K+ VS++ +PL + + K K
Sbjct: 121 RERFGDIIMQ-EAGAILLADTKLVPYLQQNFTKIAMVSIAIEEMPLEDIAPRQEKVKEIK 179
Query: 156 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215
T ASLR+DA+AS+GF +SR+K I V+VNW + GD++S+ GKGR+
Sbjct: 180 TTVASLRLDAIASSGFGISRTKAAEAIKGDRVQVNWQPAKGPSQDVSEGDVISLRGKGRM 239
Query: 216 KIGEINST-RKGKFAVELIQYL 236
++ EI T RKG+ V L +Y+
Sbjct: 240 ELAEITGTSRKGRIGVLLKRYM 261
>gi|238855267|ref|ZP_04645586.1| cell division protein [Lactobacillus jensenii 269-3]
gi|260664626|ref|ZP_05865478.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
SJ-7A-US]
gi|313471915|ref|ZP_07812407.1| cell-division protein [Lactobacillus jensenii 1153]
gi|238832159|gb|EEQ24477.1| cell division protein [Lactobacillus jensenii 269-3]
gi|239529160|gb|EEQ68161.1| cell-division protein [Lactobacillus jensenii 1153]
gi|260561691|gb|EEX27663.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
SJ-7A-US]
Length = 274
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 7/226 (3%)
Query: 9 REVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVGHPEALTSDPDIV 66
+E + ++FL P + + L +LA Q GGY +AE+CR+ + + +
Sbjct: 41 KEAVLTNFLDPG----ARVDLRELAQSDFYIQEFGGYDKAEKCRVIISNDWEYKDVENFQ 96
Query: 67 AAL-SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+L IT N F +H LG++LG+G++ +GDII G+ QF + + D++
Sbjct: 97 FSLIKITYNHKFASITHSQILGTLLGSGLSPASLGDIITDGKGNWQFFISDIMLDFVCRE 156
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
+ ++G V+V RIPL + ++ K + SLR+DA+ +A + SR+ + N I
Sbjct: 157 ITRIGKVAVRLDRIPLKQILNIEDDVQNVKLVVNSLRIDAILAALTRTSRNIINNQIEKE 216
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
++++NW + + + D++SV GRI+I I +TRKGK+ +E
Sbjct: 217 NIKLNWHKINNSNIIVTVNDVLSVRHFGRIEISNITTTRKGKYRLE 262
>gi|302388662|ref|YP_003824483.1| RNA-binding S4 domain-containing protein [Thermosediminibacter
oceani DSM 16646]
gi|302199290|gb|ADL06860.1| RNA-binding S4 domain protein [Thermosediminibacter oceani DSM
16646]
Length = 253
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 117/199 (58%), Gaps = 5/199 (2%)
Query: 40 QGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIARE 97
+GG+ +AER ++ V PE L P + A+ + + SH D+LG++LG GI+R+
Sbjct: 55 EGGHSEAER-KVLVAFPEYLEDQPFFLPIRAIRVIPKDPDEHPSHRDYLGAVLGLGISRD 113
Query: 98 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 157
K+GDII+ + GA +V E+A+Y+ +L +VGNV VS I L + K K
Sbjct: 114 KVGDIIVT-KTGADIIVKEEVAEYIGLNLSRVGNVPVSVEEISLKEVATVERSYKEIKGT 172
Query: 158 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
ASLR+DA+AS F +SRSK+ I +VR+N+ TV ++ GD++S + GR K+
Sbjct: 173 VASLRLDAIASLAFGISRSKMAPYIKGENVRLNFRTVKDPSAEVKEGDVISAARLGRAKV 232
Query: 218 GEI-NSTRKGKFAVELIQY 235
EI S++KG+ V + +Y
Sbjct: 233 VEIGGSSKKGRIYVTVHRY 251
>gi|312899018|ref|ZP_07758405.1| S4 domain protein [Megasphaera micronuciformis F0359]
gi|310619925|gb|EFQ03498.1| S4 domain protein [Megasphaera micronuciformis F0359]
Length = 261
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 2/224 (0%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
S+F +P ++ ++ GGY AER +L+ + + A +T
Sbjct: 39 SEFASPGAVQIGETVKAHATGLELRINGGYEGAERVKLAFVRQDYDGPVDFGITACRLTW 98
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
+ ++ H D LGS+ G GI R + GDII+ E GA L L DYL +LEK+ V+
Sbjct: 99 DVRYRLLGHRDVLGSLTGLGIDRSRFGDIIMH-EDGAVILADSTLYDYLRQNLEKIAMVT 157
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V+ T IPL + + K KT ASLR+DA+ S+GF +SR+K I V+VNW
Sbjct: 158 VTVTEIPLSDIPPRKEKVKEVKTTVASLRLDAIVSSGFGISRTKAAEAIKGERVQVNWQP 217
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVELIQYL 236
+ G ++S+ GKGR+++ EI T RKG+ V L +++
Sbjct: 218 AKGPAQEVGAGTVISLRGKGRMEVAEITGTSRKGRTGVLLKRFI 261
>gi|452992508|emb|CCQ96039.1| RNA-binding S4 domain protein [Clostridium ultunense Esp]
Length = 264
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 113/223 (50%), Gaps = 9/223 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI---VAALS 70
+DF+ P + + L + D+ GG +AER + + +PE DI + +L
Sbjct: 43 TDFMDPYERRLAQSILNRFIDISYKELGGIDEAERKVIMI-YPEYFQY-QDIESPIRSLM 100
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I GN SH DFLG IL GI REKIGDI++ E Q +V E+ DY++ SL KVG
Sbjct: 101 IEGNIS--KLSHRDFLGGILNLGINREKIGDILIH-EDNVQVVVKSEIFDYILISLRKVG 157
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V IPL L+ + T SLR+DAL S+ + LSR LI + +VN
Sbjct: 158 KEKVKVREIPLKELKSSNIEFEDITTTVPSLRLDALISSAWNLSRKDSQGLIESKKTKVN 217
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
W + + + GDI+S G GR + I ++KG+ VEL
Sbjct: 218 WEPIDRVSKDIGEGDIISAKGFGRFILNSIKGISKKGRVRVEL 260
>gi|292669559|ref|ZP_06602985.1| S4 domain protein [Selenomonas noxia ATCC 43541]
gi|292648768|gb|EFF66740.1| S4 domain protein [Selenomonas noxia ATCC 43541]
Length = 264
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 112/198 (56%), Gaps = 3/198 (1%)
Query: 41 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GGY AER R + H + A T D + ++ N F SH D LG+++G GI RE I
Sbjct: 68 GGYAGAERQRAMLRHADFAGTPDGFGIVCVAAAWNGQFARLSHRDVLGALMGLGIERESI 127
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDI L G A+ L +++D+++ +L +G V T + RTK + A
Sbjct: 128 GDI-LPGADAAKILCDAKISDFIVNNLTMIGAAGVKATVEDTAEIAPREERTKEIRATVA 186
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+DA+A+AGF +SRS+ + I+ V++NW + T++ GD++S+ G+GR+++ E
Sbjct: 187 SLRLDAVAAAGFGVSRSRAADDIAADKVKLNWQSAGSASKTIKEGDVLSMRGRGRVEVTE 246
Query: 220 IN-STRKGKFAVELIQYL 236
+ T+KG+ V L ++
Sbjct: 247 VRGQTKKGRTVVVLKRFF 264
>gi|255280915|ref|ZP_05345470.1| S4 domain protein [Bryantella formatexigens DSM 14469]
gi|255268363|gb|EET61568.1| S4 domain protein [Marvinbryantia formatexigens DSM 14469]
Length = 268
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 134/257 (52%), Gaps = 24/257 (9%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL- 59
+A++A SR V +DFL L + L+ VK V GGY QAER L+ P+AL
Sbjct: 15 LAKKADSRNIVTFTDFLNLNELNIYHQSAGALSFVKCVGFGGYEQAERQILAF-IPDALC 73
Query: 60 --TSD----PDIVAALSITGNF-----GFQP--------CSHGDFLGSILGTGIAREKIG 100
T D D AL + + +P SH DFLG+ L TGI R IG
Sbjct: 74 YFTEDFADRTDFSVALRQSVRYPISCLRIEPQNKKFSGSLSHRDFLGAALNTGIERSTIG 133
Query: 101 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 160
DI+++ E A + +AD+L +L +V N V+ ++P ++Y P+ + + AS
Sbjct: 134 DILVE-ENAAWMFCLERMADFLSEALTRVRNTPVNVRQVPPEKIDY-APKYELVRGSVAS 191
Query: 161 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGE 219
+R+D+L + F SRS LV LI G V VN +T NG ++ D++S G GR + +G
Sbjct: 192 VRLDSLLALAFGASRSSLVGLIEGGKVFVNGRLITSNGYKVKENDLISARGLGRFRYLGV 251
Query: 220 INSTRKGKFAVELIQYL 236
+ST+KG+ E+ +Y+
Sbjct: 252 SSSTKKGRLIAEIEKYI 268
>gi|227512216|ref|ZP_03942265.1| ribosomal protein S4e [Lactobacillus buchneri ATCC 11577]
gi|227084610|gb|EEI19922.1| ribosomal protein S4e [Lactobacillus buchneri ATCC 11577]
Length = 264
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 110/220 (50%), Gaps = 5/220 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
++FL P L + + + GGY AE R ++ +PE T D + A I
Sbjct: 38 TEFLNPRQLYILESIINRHDGIHFSTYGGYSGAELQR-AIVYPEYFTPKTDDFRITAFEI 96
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +HG LGS++G GI R +GDII G K QF+V E+ADY+ ++ +G
Sbjct: 97 DYPSKFATLAHGKILGSLMGVGIERNVVGDIITDGLKW-QFMVQSEMADYVKAQVDHIGK 155
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
+ V I + +++ +SLRVDAL S GF +SR L+ GDVR+NW
Sbjct: 156 IKVKLEDISPEGVIAPVDESETLTITVSSLRVDALISDGFHISRHHAKELVDTGDVRINW 215
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
T+ L T DI+SV G GR+ I EI T+K K +
Sbjct: 216 VDTTRPDFELSTKDIISVRGYGRLVIKEITGMTKKDKIRI 255
>gi|357058626|ref|ZP_09119474.1| hypothetical protein HMPREF9334_01191 [Selenomonas infelix ATCC
43532]
gi|355373582|gb|EHG20898.1| hypothetical protein HMPREF9334_01191 [Selenomonas infelix ATCC
43532]
Length = 264
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 113/198 (57%), Gaps = 3/198 (1%)
Query: 41 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GGY AER R + H + A T D +A + N F +H D LG+++G GI RE +
Sbjct: 68 GGYAGAERQRAMLCHRDFAGTPDGFAIACVEAAWNGQFARLTHRDVLGAVMGLGIERELV 127
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDI L A+ + ++AD+++++L +G V V L A+ RTK + A
Sbjct: 128 GDI-LPASDTARIICDAKIADFIVSNLTMIGAVGVKTALSDLAAIPPREERTKEIRATVA 186
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+D++ +AGF +SRS+ + I+ V++NW + T++ GD++S+ G+GR+++ E
Sbjct: 187 SLRLDSIVAAGFGISRSRAADDIAADKVKLNWQSAASASKTIKEGDVLSMRGRGRVEVTE 246
Query: 220 IN-STRKGKFAVELIQYL 236
+ T+KG+ V L ++
Sbjct: 247 VRGQTKKGRTVVVLNRFF 264
>gi|374324832|ref|YP_005077961.1| hypothetical protein HPL003_25110 [Paenibacillus terrae HPL-003]
gi|357203841|gb|AET61738.1| hypothetical protein HPL003_25110 [Paenibacillus terrae HPL-003]
Length = 260
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 12/230 (5%)
Query: 14 SDFLTPPVLKESMMALEKLAD----VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
+DFL P + LE LA V GGY +ER R + + ++ +
Sbjct: 36 TDFLDP----RQLYILETLASKEDKVTIRVDGGYEASERKRALIAPDYSYVDGENMGIQV 91
Query: 69 LSITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
LS+T + HGD+LG+ILG GI R KIGDI + + G LV E++D++ L+
Sbjct: 92 LSVTSDDHKISTLEHGDYLGAILGLGIKRGKIGDIHVL-DDGCHVLVASEISDFITMHLQ 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+V V V +P L + + ASLR+D +AS +KLSRSK++ I G
Sbjct: 151 QVHRVHVWTELLPPENLRTKDVALEPLDLTVASLRLDGIASDVYKLSRSKILTPIRAGRC 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
RVNW T+L+ GD++S+ G GR K+ E + T+KG+F V++ +++
Sbjct: 211 RVNWKVEENPSTSLKAGDVISMQGFGRFKVLETDGMTKKGRFRVKIGKFI 260
>gi|308069866|ref|YP_003871471.1| hypothetical protein PPE_03113 [Paenibacillus polymyxa E681]
gi|305859145|gb|ADM70933.1| Uncharacterized conserved protein, contains S4-like domain
[Paenibacillus polymyxa E681]
Length = 260
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 8/228 (3%)
Query: 14 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 70
+DFL P + E++ + E ++ GGY +ER R + + ++ + LS
Sbjct: 36 TDFLDPRQQYILETLASKEDKVTIRV--DGGYMASERKRALIAPDYSYLDGEEMGIQVLS 93
Query: 71 ITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
IT + HGD+LG++LG GI R KIGDI + + G LV E+ D++ L++V
Sbjct: 94 ITSDDHKVGTLEHGDYLGALLGLGIKRGKIGDIHVL-DDGCHVLVASEIGDFMTMHLQQV 152
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V V +P+ +L + ++ ASLR+D +AS +KLSRSK++ I G RV
Sbjct: 153 HRVHVWTELLPVASLRTKEVALEAIDLTVASLRLDGIASDVYKLSRSKILTPIRAGRCRV 212
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
NW T L+ GD++S+ G GR K+ E + T+KG+F V++ +++
Sbjct: 213 NWKVEENPSTLLKAGDVISMQGFGRFKVLETDGMTKKGRFRVKIGKFV 260
>gi|222529338|ref|YP_002573220.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222456185|gb|ACM60447.1| RNA-binding S4 domain protein [Caldicellulosiruptor bescii DSM
6725]
Length = 260
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 130/228 (57%), Gaps = 6/228 (2%)
Query: 13 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+SDFL+P +K ++ L K + + + GGY +ER L++ + + ++ + I
Sbjct: 33 YSDFLSPFAIKYAVEVLLKNQNHILHRSWGGYEGSERNILALFNRDFEEYTENLTYPIQI 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
SH LGS +G G+ R+KIGDI+++ E GA V E+A Y++T+++K+GN
Sbjct: 93 ILIEAKNNLSHRQILGSFIGNGLKRDKIGDILVK-ENGALVFVKDEIATYVVTNIDKMGN 151
Query: 132 VSVSCTRIPLLALE---YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V C+ + ++ + +K ASLRVD++ S GF +SR + +LI V
Sbjct: 152 EKVKCSIVGNGQIDIKWFINNNSKRVVYTVASLRVDSVISHGFGISREEAADLIRQMKVA 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
VNW + K ++ GD+VSV GR+KI ++ ++T+KG+ ++E++++
Sbjct: 212 VNWVYIDKPSYAVKEGDLVSVRHHGRLKIEKVLSTTKKGRISIEVLRF 259
>gi|373115649|ref|ZP_09529818.1| hypothetical protein HMPREF0995_00654 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670171|gb|EHO35257.1| hypothetical protein HMPREF0995_00654 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 266
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 124/230 (53%), Gaps = 9/230 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPD----IVA 67
+DFL+P L + + GGY AER C EA D V
Sbjct: 39 TDFLSPQERVSVENLLNACGHPRHLFFGGYEGAERTVCAFLPDWQEAEDWQGDGESCPVR 98
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
AL T + G Q +H DFLGS+LG G+ REK+GD+++ + L + E+AD+L+ +E
Sbjct: 99 ALRCTWSGG-QKLTHRDFLGSVLGLGLDREKVGDLLVADGR-CDVLALEEVADFLVFHME 156
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+ G V + C+ +PL LE T++ + +SLR+DA+A++GF LSR K +LI++G V
Sbjct: 157 QAGRVKLKCSPLPLDRLEPPAVETRTIRDTVSSLRLDAVAASGFSLSRGKAADLIASGRV 216
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
++N K + GD++S G G+ + E+ ++KG+ + L +Y+
Sbjct: 217 QLNHRECVKPDHAVAQGDVLSCRGLGKCVLTEVGGPSKKGRILIVLERYV 266
>gi|256850936|ref|ZP_05556325.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
27-2-CHN]
gi|260661150|ref|ZP_05862064.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
115-3-CHN]
gi|297205816|ref|ZP_06923211.1| cell-division protein [Lactobacillus jensenii JV-V16]
gi|256615998|gb|EEU21186.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
27-2-CHN]
gi|260548087|gb|EEX24063.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
115-3-CHN]
gi|297148942|gb|EFH29240.1| cell-division protein [Lactobacillus jensenii JV-V16]
Length = 274
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 7/226 (3%)
Query: 9 REVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVGHPEALTSDPDI- 65
+E + ++FL P + L++LA Q GGY +AE+CR + + +
Sbjct: 41 KEEILTNFLDPG----ARANLKELAQDDFYVQEFGGYDRAEKCRAIIRNDWEYQDVRNFQ 96
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ ++IT N F +H LG+++G+G+ +GDII G+ QF V +AD++
Sbjct: 97 LKLINITYNHKFATITHSQILGTLVGSGLNLSSLGDIITDGKGKWQFFVSEAMADFVCQE 156
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
++++G V+VS + L + ++ K I SLR+DA+ +A K SR+ + LI
Sbjct: 157 IKRIGKVAVSLNEVSLKQIVNIEDDIQNTKIIVNSLRIDAILAALTKSSRNIVKQLIEKE 216
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
++++NW + + + D++SV GRI+I I +TRKGK+ +E
Sbjct: 217 NIKLNWHKIDNSNIIISVNDVLSVRHYGRIEISNITNTRKGKYRLE 262
>gi|365851170|ref|ZP_09391611.1| S4 domain protein [Lactobacillus parafarraginis F0439]
gi|363717369|gb|EHM00747.1| S4 domain protein [Lactobacillus parafarraginis F0439]
Length = 249
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 108/215 (50%), Gaps = 5/215 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF 75
FL P L + + ++ GGY AE R ++ +PE T + S ++
Sbjct: 25 FLNPRQLFILESIINRHDGIRFSTFGGYEGAELKR-AIVYPEYFTPKNEDFHITSFVIDY 83
Query: 76 --GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F SHG LGSI+G GI R+ IGDII G QFL E+ADY+ ++KVG +
Sbjct: 84 PSKFATLSHGQVLGSIMGAGIERDVIGDIITDG-LSWQFLCQSEMADYIKAQVDKVGKIK 142
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V I L ++ T +SLRVDAL S GF +SR LI G+VR+NW
Sbjct: 143 VKLEVIESDQLVTPVDESEEVSTTISSLRVDALVSEGFHISRHHAKELIDGGEVRINWGE 202
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 227
+ + DIVSV G GRI I EI+ T+KGK
Sbjct: 203 TQRPDLEVSMHDIVSVRGYGRIVIREIDGITKKGK 237
>gi|423682084|ref|ZP_17656923.1| RNA-binding protein [Bacillus licheniformis WX-02]
gi|383438858|gb|EID46633.1| RNA-binding protein [Bacillus licheniformis WX-02]
Length = 258
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 121/220 (55%), Gaps = 9/220 (4%)
Query: 14 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDI-VAAL 69
+DFL P V+ +S++ + +V+ GG+P+AER R +V PE A S D + A
Sbjct: 35 TDFLDPREQVILQSVIG--QSDEVRLEFFGGFPEAERKR-AVLFPEYAEPSAEDFQLQAW 91
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ F H + LGS++G G+ R+K GD+I + QF+ E+AD++ T L ++
Sbjct: 92 EVIYPQKFASIEHRELLGSLMGIGLKRQKFGDLIF-SDGTWQFICSEEVADFVFTQLTQI 150
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
G V VS +IPL L+ + +SLR+DA+ SA + SR K L+ NG V+V
Sbjct: 151 GKVKVSLEKIPLSKLKVPEQDVEIRDDTVSSLRLDAICSAMSRQSRQKAQVLVKNGLVKV 210
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 228
NW + L GD+VS+ G GR ++ I+ T+KGK+
Sbjct: 211 NWKVIEDPSYALAEGDMVSIRGFGRFRMKNIDGKTKKGKW 250
>gi|52080143|ref|YP_078934.1| RNA-binding protein [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646078|ref|ZP_08000308.1| YlmH protein [Bacillus sp. BT1B_CT2]
gi|404489031|ref|YP_006713137.1| RNA-binding protein YlmH [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52003354|gb|AAU23296.1| RNA-binding protein [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52348021|gb|AAU40655.1| putative RNA-binding protein YlmH [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317391828|gb|EFV72625.1| YlmH protein [Bacillus sp. BT1B_CT2]
Length = 258
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 121/220 (55%), Gaps = 9/220 (4%)
Query: 14 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDI-VAAL 69
+DFL P V+ +S++ + +V+ GG+P+AER R +V PE A S D + A
Sbjct: 35 TDFLDPREQVILQSVIG--QSDEVRLEFFGGFPEAERKR-AVLFPEYAEPSAEDFQLQAW 91
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ F H + LGS++G G+ R+K GD+I + QF+ E+AD++ T L ++
Sbjct: 92 EVIYPQKFASIEHRELLGSLMGIGLKRQKFGDLIF-SDGTWQFICSEEVADFVFTQLTQI 150
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
G V VS +IPL L+ + +SLR+DA+ SA + SR K L+ NG V+V
Sbjct: 151 GKVKVSLEKIPLSKLKVPEQDVEIRDDTVSSLRLDAICSAMSRQSRQKAQVLVKNGLVKV 210
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 228
NW + L GD+VS+ G GR ++ I+ T+KGK+
Sbjct: 211 NWKVIEDPSYALAEGDMVSIRGFGRFRMKNIDGKTKKGKW 250
>gi|365839024|ref|ZP_09380275.1| S4 domain protein [Anaeroglobus geminatus F0357]
gi|364565826|gb|EHM43537.1| S4 domain protein [Anaeroglobus geminatus F0357]
Length = 261
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 2/224 (0%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
S+F++P ++ A + GGY AER +L + S + A IT
Sbjct: 39 SEFVSPGAVQIGETVSAHAATLVLRVNGGYEGAERVKLCFIRNDYEGSVDFGLTACRITW 98
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
+ ++ H D LG+++ GI R + GDII+ E GA LV +L YL +L K+ VS
Sbjct: 99 DARYRLLGHRDVLGALMSLGIDRGRFGDIIMH-EDGAVILVDTKLLPYLQQNLGKIAMVS 157
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V+ + +P+ ++ + K KT ASLR+DA+ S+GF +SR+K I V+VNW
Sbjct: 158 VTISEVPVASIPPRREKIKEIKTTVASLRLDAVVSSGFGISRTKAAEAIKGERVQVNWQP 217
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVELIQYL 236
+ TG ++S+ GKGR+++ E+ T RKG+ V L +Y+
Sbjct: 218 AKGASQEVGTGAVISLRGKGRMELAEVTGTSRKGRTGVLLRRYM 261
>gi|430750503|ref|YP_007213411.1| hypothetical protein Theco_2302 [Thermobacillus composti KWC4]
gi|430734468|gb|AGA58413.1| hypothetical protein Theco_2302 [Thermobacillus composti KWC4]
Length = 260
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 122/240 (50%), Gaps = 12/240 (5%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEAL 59
RA+ R + +DFL P L+ +A D GGYP+AER R +
Sbjct: 26 RAAERHAPVVTDFLDP----RQQFILQSIAGREPDAVLRLDGGYPEAERKRAVIVPAYRD 81
Query: 60 TSDPDI-VAALSITGNFG-FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
D D + L++ + G F HGD+LG++LG GI R+ IGD+ ++ + G LV E
Sbjct: 82 PEDVDCGIVVLAVEASGGKFLELDHGDYLGALLGLGIKRDVIGDLHVR-DDGCHCLVTEE 140
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+A +L T L +V V V +P +L P ASLR+D +AS ++SRSK
Sbjct: 141 MAGFLHTHLNQVHRVPVRTDILPRESLRVVQPEMDVTVITVASLRLDGVASDVLRISRSK 200
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
+++ I G RVNW T L GDIVS G GR KI +++ T+ G+ V + +++
Sbjct: 201 ILDPIRAGRCRVNWKTEEDPSARLEEGDIVSFKGFGRFKILKVDGPTKSGRLRVSIGKFI 260
>gi|312622416|ref|YP_004024029.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202883|gb|ADQ46210.1| RNA-binding S4 domain protein [Caldicellulosiruptor kronotskyensis
2002]
Length = 255
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 128/228 (56%), Gaps = 6/228 (2%)
Query: 13 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+SDFL+P +K ++ L K + + + GGY +ER L++ + + ++ +
Sbjct: 28 YSDFLSPFAIKYAVEVLLKNQNHILHRSWGGYEDSERNILALFNRDFEEYTENLTYPIQT 87
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
SH LGS +G G+ R+KIGDI+++ E GA V E+A Y++T+++K+GN
Sbjct: 88 ILIEAKNNLSHRQILGSFIGNGLKRDKIGDILVK-ENGALVFVKDEIATYVVTNIDKIGN 146
Query: 132 VSVSCTRIPLLALE---YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V C+ + ++ + +K ASLRVD++ S GF +SR + +LI V
Sbjct: 147 EKVKCSIVENGQIDIKWFINNNSKRVVYTVASLRVDSVISHGFGISREEAADLIRQMKVA 206
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
VNW + K ++ GD+VSV GR+KI ++ ++T+KG+ ++E+ ++
Sbjct: 207 VNWVYIDKPSYAVKEGDLVSVRHHGRLKIEKVLSTTKKGRISIEVSRF 254
>gi|397905182|ref|ZP_10506053.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Caloramator australicus RC3]
gi|397161831|emb|CCJ33387.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Caloramator australicus RC3]
Length = 251
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 11/227 (4%)
Query: 6 SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA--ERCRLSVGHPEALTSDP 63
S + + + +DFL P E AL++L + V + + ER +G + +
Sbjct: 26 SKKWQTVFTDFLNP----EEQAALKELCSDEGVEVCFFDEGKLERTIAKLGLNDDIEYPI 81
Query: 64 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 123
D+ L I GNF F+ H D+LG+IL GI REKIGDI + E GA+ V+ EL+DY++
Sbjct: 82 DV---LKIEGNFKFEQLEHRDYLGAILSLGIKREKIGDINVY-EDGAEVYVLKELSDYIL 137
Query: 124 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 183
+L ++ + SV +I L + + K F ASLR+DA+ + +SR+K LI
Sbjct: 138 LNLTQIKHTSVKIKKISLQEAREKQVKFKEFNINIASLRLDAIVAELIGVSRNKASELIR 197
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFA 229
N V++N+ + + + ++S+ G GR ++GE + +TR G+F
Sbjct: 198 NEKVKLNFKLIKEVDKKVDPNSVLSIKGYGRFQLGECLGTTRNGRFV 244
>gi|304437219|ref|ZP_07397179.1| ribosomal protein S4e [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304369711|gb|EFM23376.1| ribosomal protein S4e [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 264
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 110/205 (53%), Gaps = 3/205 (1%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
D++ GGY AER R + H + D + + T N F +H D LG+++G
Sbjct: 61 DLQLDFDGGYQGAERARAMLRHRDFAGRTEDFGIVCVEATWNGQFARLTHRDVLGAVMGL 120
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
GI RE IGDI L A+ L ++A +LI +L +G V V L + RTK
Sbjct: 121 GIEREMIGDI-LPASDAAKILCDAKIAPFLIENLTMIGAVGVKTVPAELTEIAPREERTK 179
Query: 153 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
+ ASLR+D++ +AGF +SRS+ + I+ V+ NW + T++ GD++S+ G+
Sbjct: 180 EIRATVASLRLDSIVAAGFGISRSRAADDITADKVKHNWQSAASASKTVKEGDVLSMRGR 239
Query: 213 GRIKIGEIN-STRKGKFAVELIQYL 236
GR+++ E+ T+KG+ V L ++
Sbjct: 240 GRVEVTEVRGQTKKGRTVVVLHRFF 264
>gi|238927880|ref|ZP_04659640.1| ribosomal protein S4e [Selenomonas flueggei ATCC 43531]
gi|238884213|gb|EEQ47851.1| ribosomal protein S4e [Selenomonas flueggei ATCC 43531]
Length = 264
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 3/205 (1%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
D++ GGY AER R + H + D +A + N F +H D LG+++G
Sbjct: 61 DLQLDFDGGYQGAERARAMLRHRDFAGRTEDFGIACVEAAWNGQFARLTHRDVLGAVMGL 120
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
GI RE IGDI L A+ L ++A +LI +L +G VSV L + RTK
Sbjct: 121 GIEREMIGDI-LPAPDTAKILCDAKIAPFLIENLTMIGAVSVKTAPSDLAEIAPREERTK 179
Query: 153 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
+ ASLR+D++ +AGF +SRS+ + I+ V+ NW + T++ GD++S+ G+
Sbjct: 180 EIRATVASLRLDSIVAAGFGISRSRAADDIAADKVKHNWQSTASASKTVKEGDVLSMRGR 239
Query: 213 GRIKIGEIN-STRKGKFAVELIQYL 236
GR+++ E+ T+KG+ V L ++
Sbjct: 240 GRVEVTEVRGQTKKGRTVVVLHRFF 264
>gi|365843208|ref|ZP_09384157.1| S4 domain protein [Flavonifractor plautii ATCC 29863]
gi|364573034|gb|EHM50556.1| S4 domain protein [Flavonifractor plautii ATCC 29863]
Length = 266
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 9/228 (3%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPD----IVAAL 69
FL+P L + + GGY AER C EA D V AL
Sbjct: 41 FLSPQERASVENLLNACGHPRHIFFGGYEGAERTVCAFLPDWQEAEDWQGDGESCPVRAL 100
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
T + G Q +H DFLGSILG G+ REK+GD+++ + L + E+AD+L+ +E+
Sbjct: 101 RCTWSGG-QKLTHRDFLGSILGLGLDREKVGDLLVTDGR-CDVLALEEVADFLVFHMEQA 158
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
G V + C+ +PL LE T++ + +SLR+DA+A++GF LSR K +LI++G V++
Sbjct: 159 GRVKLKCSPLPLDRLEPPAVETRTIRDTVSSLRLDAVAASGFSLSRGKAADLIASGRVQL 218
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
N K + GD++S G G+ + E+ ++KG+ + L +Y+
Sbjct: 219 NHRECVKPDHAVAQGDVLSCRGLGKCVLTEVGGPSKKGRILIVLERYV 266
>gi|320530724|ref|ZP_08031768.1| S4 domain protein [Selenomonas artemidis F0399]
gi|320137011|gb|EFW28949.1| S4 domain protein [Selenomonas artemidis F0399]
Length = 264
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 113/198 (57%), Gaps = 3/198 (1%)
Query: 41 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GGY AER R + H + A T + ++ N F +H D LG+++G GI R +
Sbjct: 68 GGYAGAERQRAMLLHEDFAGTPGGYEIVCVTAAWNGQFAHLTHRDVLGALMGLGIDRGGV 127
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDI+L G+ A+ L ++A +++ L +G V V+ T L + RTK + A
Sbjct: 128 GDILLAGDT-AKILCDTKMAQFIMEELTMIGAVRVTTTLGDLADIAPREERTKEIRATVA 186
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+DA+A+AGF +SRS+ + I+ V++NW + ++ GD++S+ G+GR+++ E
Sbjct: 187 SLRLDAIAAAGFGISRSRAADDIAADKVKLNWQSAGSASKNIKQGDVLSMRGRGRLEVTE 246
Query: 220 I-NSTRKGKFAVELIQYL 236
+ T+KG+ +V L +Y
Sbjct: 247 VRGQTKKGRISVVLHRYF 264
>gi|295109996|emb|CBL23949.1| Uncharacterized conserved protein, contains S4-like domain
[Ruminococcus obeum A2-162]
Length = 250
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 132/246 (53%), Gaps = 21/246 (8%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPE 57
+A + R V SDFL L E + E+ + V GGY QAER ++ HP+
Sbjct: 14 LANLSYQRDIVTFSDFLN---LNEQNIVNEQKNQMPGVIIECSGGYEQAER-QMVAFHPD 69
Query: 58 ALTSDPDI-VAALSI---TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 113
AL + + L I F + +H DFLG++L GI R IGDI++Q E A
Sbjct: 70 ALLFPWEYPITCLKIEPLAAKFS-ESLTHRDFLGAVLNLGIERSVIGDILVQ-EHTAWIF 127
Query: 114 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAG 170
++ADY+I +L +V + ++ +++ E+ P T F+TI AS+R+D L
Sbjct: 128 CHNKIADYIIENLTRVRHTAMKISKVD--NPEHFP--TPHFETISGTCASVRLDTLIGLA 183
Query: 171 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFA 229
F+ SRS +V+ I G V VN +T NG + GDIVSV GKGR + G + T+KG+++
Sbjct: 184 FQSSRSSMVSFIEGGQVFVNGKLITSNGYEPKDGDIVSVRGKGRFRYEGILGQTKKGRYS 243
Query: 230 VELIQY 235
++L +Y
Sbjct: 244 IKLSRY 249
>gi|338813355|ref|ZP_08625484.1| RNA-binding S4 domain protein [Acetonema longum DSM 6540]
gi|337274714|gb|EGO63222.1| RNA-binding S4 domain protein [Acetonema longum DSM 6540]
Length = 263
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 130/229 (56%), Gaps = 10/229 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
SDFL P + + + ++ + GGYP AER + + + + + ++ L++
Sbjct: 39 SDFLDPFGISVAETIIAHYGRLRLASDGGYPGAERVKAAFVTNDYMGTIDFGISVLAVQY 98
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF--LVVPELADYLITSLEKVGN 131
+ + SH D LG++ G G+ RE IGDII G++ Q+ L+ +L ++++ +L ++G
Sbjct: 99 DSRYYSLSHRDVLGALTGAGLKREVIGDII-PGDRQYQYQILIDAKLVEFVLRNLTQIGP 157
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEA---SLRVDALASAGFKLSRSKLVNLISNGDVR 188
V ++ LL L PR ++ K I A SLR+D++A+AGF SR+K+ I VR
Sbjct: 158 APV---QLSLLDLTEIVPREETLKEIRATVASLRLDSVAAAGFGTSRTKMAAEIMAEKVR 214
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
VNW + ++ GD++++ G+GR+++ EI T+KG+ ++ L +YL
Sbjct: 215 VNWQDARNSSQIIKPGDVIAMRGRGRVEVCEIGGQTKKGRTSLLLKRYL 263
>gi|166031850|ref|ZP_02234679.1| hypothetical protein DORFOR_01551 [Dorea formicigenerans ATCC
27755]
gi|166028303|gb|EDR47060.1| S4 domain protein [Dorea formicigenerans ATCC 27755]
Length = 251
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 124/236 (52%), Gaps = 7/236 (2%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD 64
A SR V SDFL L + + GGY AER ++ P+AL D
Sbjct: 19 AFSRDIVTFSDFLNLNELNILHRTPKDQFKARFETYGGYELAER-QMVAFLPDALYYDYG 77
Query: 65 I-VAALSITG-NFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
+ AL I N F + +H D+LG+I+ G +R KIGDII Q + GA V E++DY
Sbjct: 78 YPMQALKICPVNKRFAEDLTHRDYLGAIMNLGTSRTKIGDII-QADDGAIVFVKEEISDY 136
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
++ +L ++ + +++ R L + YEP + K S+R+D + S + LSRSKL
Sbjct: 137 IMKNLTRIRHTTITVERRELSDISYEP-HFEELKGTVPSVRLDTVLSVAYPLSRSKLTTY 195
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVELIQYL 236
I V VN +T NG L GD++SV G GRI G ++ T+KG++ + L +Y+
Sbjct: 196 IEAAKVFVNGKLITNNGYHLNEGDLISVRGLGRIAYAGILSETKKGRYMISLRKYI 251
>gi|332653672|ref|ZP_08419416.1| S4 domain protein [Ruminococcaceae bacterium D16]
gi|332516758|gb|EGJ46363.1| S4 domain protein [Ruminococcaceae bacterium D16]
Length = 265
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 119/230 (51%), Gaps = 8/230 (3%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRL--SVGHPEALTSDPD-IVA 67
H+ FL+P L + V GGYP AER C E +DP+ +A
Sbjct: 38 HTPFLSPGERASVTDLLSAWGHPRHVFFGGYPDAERTVCLFLPDWQEEEDAIADPEGPLA 97
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
AL T G + SH D LGS++G GI REK+GDI+++G + Q L + + L++ E
Sbjct: 98 ALEATFPNGAE-LSHRDILGSLMGLGITREKLGDILVEGNR-CQVLALRDALPILLSQWE 155
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
G I L L +PP+ K+ + A+LR+DA+ ++GF SRSK L+S G V
Sbjct: 156 SAGRWKAKLREISLSELTPKPPQVKTIRDTVAALRLDAVLASGFSTSRSKAAQLVSAGRV 215
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
VN K+ T+ GD++S G G+ + E+ ++KG+ + L +Y+
Sbjct: 216 SVNHRECMKSDRTVEQGDVLSCRGLGKCVVKEVLGQSKKGRIMLVLERYI 265
>gi|148242945|ref|YP_001228102.1| hypothetical protein SynRCC307_1846 [Synechococcus sp. RCC307]
gi|147851255|emb|CAK28749.1| Conserved hypothetical protein, contains S4-like domain
[Synechococcus sp. RCC307]
Length = 261
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 119/222 (53%), Gaps = 3/222 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSI 71
S FLT P +E+ L ++ + GG+PQAER L + + A +P +A + +
Sbjct: 36 SAFLTGPQREEAEERFAPLGELHLRSAGGFPQAERRLLQISRSDQAADAGEPAPLALVEV 95
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+GNF F P +++ I +GD++++G++GA +V +A+ L +V
Sbjct: 96 SGNFLFDPAEPTAIRAALIDQHSIDPLHLGDVLVRGDRGALVIVTSAMAERLQEQSLQVR 155
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+V L + +KS ++EASLR+DA+ASAGF +SRSK+ I G +RV+
Sbjct: 156 SVDCQLQAGDWSRLPSQASSSKSLTSVEASLRLDAIASAGFGVSRSKMATWIRQGRIRVD 215
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
W VT L+ G+ V + G+G + + ++ T++ ++ +++
Sbjct: 216 WAVVTTPSRELQNGERVQLEGRGELVLDRVDRTKRDRWRLQM 257
>gi|307244150|ref|ZP_07526268.1| S4 domain protein [Peptostreptococcus stomatis DSM 17678]
gi|306492521|gb|EFM64556.1| S4 domain protein [Peptostreptococcus stomatis DSM 17678]
Length = 261
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 127/229 (55%), Gaps = 9/229 (3%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSI 71
+++FL P ++ ++ + D++ +GGY AER + + + + D+ + L I
Sbjct: 37 NTEFLNPYEIRNAISIINYDKDLEYTIEGGYEDAERAVIFIYPDYYILEEGDLTLTYLEI 96
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
GNF F SH D+LGS++ GI REKIGDI++ + Q +V ++AD++I + ++ N
Sbjct: 97 RGNFKFTTVSHRDYLGSLMSLGIKREKIGDILVHDD-YCQMVVDSDIADFIIYNYNRIKN 155
Query: 132 VSVSCTRIPLLALEYEPPRTKSF--KTIE-ASLRVDALASAGFKLSRSKLVNLISNGDVR 188
VS T I L +PP KS+ K +SLR+D++ + F LSR + LI+ V+
Sbjct: 156 NKVSVTEIDKSDL--KPP-IKSYDDKVFSISSLRLDSVIAGAFNLSRQEASKLINADLVQ 212
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
VN+ V ++ G I+SV KG+ ++ ++K KF V++ +++
Sbjct: 213 VNYEPVNNVSKSIEEGSIISVRKKGKFIFDKVLGMSKKDKFRVKINKFV 261
>gi|427405920|ref|ZP_18896125.1| hypothetical protein HMPREF9161_00485 [Selenomonas sp. F0473]
gi|425708761|gb|EKU71800.1| hypothetical protein HMPREF9161_00485 [Selenomonas sp. F0473]
Length = 264
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 112/198 (56%), Gaps = 3/198 (1%)
Query: 41 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GGY AER R + H + A T +A ++ N F SH D LG+++G GIAR+ +
Sbjct: 68 GGYAGAERQRAMLRHEDFAGTPGGYEIACVAAAWNGQFARLSHRDVLGAVMGLGIARDGV 127
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDI++ + A+ L ++AD++ L +G V V+ + L + R K + A
Sbjct: 128 GDILV-AQDTAKILCDAKIADFIAERLTMIGAVHVTASLGDLAEIAPREERIKEIRATVA 186
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+D++A+AGF +SRS+ + I+ V++NW + + GD++S+ G+GR+++ E
Sbjct: 187 SLRLDSVAAAGFGISRSRAADDIAADKVKLNWQSAGSASKNVNEGDVLSMRGRGRVEVTE 246
Query: 220 INS-TRKGKFAVELIQYL 236
+ T+KG+ + L +Y
Sbjct: 247 VRGRTKKGRIVIVLHRYF 264
>gi|226313407|ref|YP_002773301.1| hypothetical protein BBR47_38200 [Brevibacillus brevis NBRC 100599]
gi|226096355|dbj|BAH44797.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 257
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 9/219 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DF+ P L ++ DVK GGY AER R+ + HPE L +PD + L+I
Sbjct: 34 TDFVDPRQLLIFQSLSSQVTDVKVSPYGGYEGAERVRIII-HPEYLPVEPDDYRLTLLAI 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
+ F H D +G++LG G+ REK GD+ L G+ +V E+AD++ + ++
Sbjct: 93 KADQRFHVLEHRDVMGAMLGVGMKREKFGDM-LTDSAGSYAIVAEEVADFVCAQVTQIHR 151
Query: 132 VSVSCTRIPLLALEYEPPRTKSF-KTIEA-SLRVDALASAGFKLSRSKLVNLISNGDVRV 189
SV R+ A + PP K KTI S R+DA+ +SR+K + I G V++
Sbjct: 152 TSVQFERVAWEA--FTPPAPKFVEKTITVPSGRIDAIIGEVHNMSRAKALVPIRAGKVKI 209
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGK 227
NW + L+ GD+VS++G GR KI E+ TR G+
Sbjct: 210 NWKVIEDPSYQLQMGDMVSLAGYGRFKILEVAGPTRSGR 248
>gi|398813824|ref|ZP_10572515.1| hypothetical protein PMI05_00924 [Brevibacillus sp. BC25]
gi|398037877|gb|EJL31054.1| hypothetical protein PMI05_00924 [Brevibacillus sp. BC25]
Length = 257
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 17/224 (7%)
Query: 14 SDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VA 67
+DF+ P +M E L+ DVK GGY AER R+ + HPE L +P+ +
Sbjct: 34 TDFVDP----RQLMIFESLSSQVRDVKVSPYGGYEGAERVRIII-HPEYLPVEPEDYRLT 88
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L+I + F H D +G++LG G+ REK GD+ L G+ +V E+AD++ +
Sbjct: 89 LLAIKADQRFHVLEHRDVMGAMLGVGMKREKFGDM-LTDSAGSYTIVAEEVADFVCAQVT 147
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEA-SLRVDALASAGFKLSRSKLVNLISNG 185
++ SV R+ A + PP K KTI S R+DA+ +SR+K + I G
Sbjct: 148 QIHRTSVQFERVAWEA--FTPPAPKFVEKTITVPSPRIDAIIGEVHNMSRAKALVPIRAG 205
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKF 228
V++NW + L+ GD+VS++G GR KI E+ TR G+
Sbjct: 206 KVKINWKVIEDPSYQLQMGDMVSLAGYGRFKILEVAGPTRSGRL 249
>gi|33861912|ref|NP_893473.1| hypothetical protein PMM1356 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33640280|emb|CAE19815.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 263
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 10/229 (4%)
Query: 12 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVA---- 67
+S F+ +LKE E L D K GGY A+R +++ + +++
Sbjct: 38 FNSTFVCEEILKE----FENLNDFKFFVFGGYNSAQRSKIACFREDNTPEKNELIKDFPA 93
Query: 68 -ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
+ GNF F + DF ++ G+ E+IGDI G++GAQ ++ ++L +
Sbjct: 94 KGFQMNGNFLFDNATQDDFRSLLVDNGLREERIGDIWTIGDRGAQGIIDDSKIEFLDEKI 153
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEASLRVDALASAGFKLSRSKLVNLISNG 185
+ +V V + L L+ R+K T+EAS R+DA+ASAGF++SR+K++ I G
Sbjct: 154 FSLRDVKVKIKIVSLDELQIPAGRSKKIINTVEASTRIDAIASAGFRISRNKILERIETG 213
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 234
+++N TV K +L+ GD + + KG I+I ++ T++ ++ ++L++
Sbjct: 214 MLKLNGKTVKKGTISLKVGDKLQLDNKGFIEILDLEITKRERWKIKLLR 262
>gi|422698173|ref|ZP_16756093.1| S4 domain protein [Enterococcus faecalis TX1346]
gi|315173285|gb|EFU17302.1| S4 domain protein [Enterococcus faecalis TX1346]
Length = 260
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 113/221 (51%), Gaps = 3/221 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+V + + + +T +SLR+D++ SA F +SR + LI +G V+VNWT
Sbjct: 155 TVRLEERDYIQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
T+ L DIVS+ G GR++I E+ T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255
>gi|260438388|ref|ZP_05792204.1| S4 domain protein [Butyrivibrio crossotus DSM 2876]
gi|292808974|gb|EFF68179.1| S4 domain protein [Butyrivibrio crossotus DSM 2876]
Length = 250
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 125/229 (54%), Gaps = 14/229 (6%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+DFL + K+++ + +L V+ GGY AER + ++ SD +
Sbjct: 28 TDFL--DIYKQNLFNTVIRELPPVQYRFDGGYELAERKVIMFLPQDSEISDLPFLTLKVT 85
Query: 72 TGNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
N F + +H D+LGSI+G GI R+K+GDI+L + A + +A+YL +L K+
Sbjct: 86 PRNLHFTEKLNHRDYLGSIMGLGIKRDKVGDILLY-DNFAYIFCMKSIAEYLTDNLLKIR 144
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDV 187
N V+ T I YEP S++ I+ ASLR+DA+ + GF SRS + + I +G V
Sbjct: 145 NTYVTVTEISNEEFIYEP----SYEVIKGSVASLRLDAVIALGFNGSRSHITSYIIDGKV 200
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVELIQY 235
VN +T N L+ GDI+SV G G+I+ + ++ T+KG+ + + +Y
Sbjct: 201 SVNGRIITSNAYNLKAGDIISVHGLGKIRYMDTLSETKKGRIMITINKY 249
>gi|401565106|ref|ZP_10805961.1| S4 domain protein [Selenomonas sp. FOBRC6]
gi|400188139|gb|EJO22313.1| S4 domain protein [Selenomonas sp. FOBRC6]
Length = 264
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 111/198 (56%), Gaps = 3/198 (1%)
Query: 41 GGYPQAERCRLSVGHPEAL-TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GGY AER R + H + T D +A + + N F +H D LG+++G GI RE I
Sbjct: 68 GGYTGAERQRAMLRHQDFRGTPDGFAIACVEASWNGQFARLTHRDVLGAVMGLGIERELI 127
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDI L A+ + ++AD+++++L +G V L + RTK + A
Sbjct: 128 GDI-LPAPDTAKIICDAKIADFIVSNLTMIGAVGAKAALSNLEEIAPREERTKEIRATVA 186
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+D++ +AGF +SRS+ + I+ V++NW + T++ GD++S+ G+GRI++ E
Sbjct: 187 SLRLDSIVAAGFGISRSRAADDIAADKVKLNWQSAGSASKTIKEGDVLSMRGRGRIEVTE 246
Query: 220 IN-STRKGKFAVELIQYL 236
+ T+KG+ V L ++
Sbjct: 247 VRGQTKKGRTVVVLNRFF 264
>gi|402303250|ref|ZP_10822346.1| S4 domain protein [Selenomonas sp. FOBRC9]
gi|400378880|gb|EJP31730.1| S4 domain protein [Selenomonas sp. FOBRC9]
Length = 264
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 111/199 (55%), Gaps = 5/199 (2%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITG--NFGFQPCSHGDFLGSILGTGIAREK 98
GGY AER R + H E P + +T N F +H D LG+++G GI R
Sbjct: 68 GGYAGAERQRAMLLH-EDFAGTPGGCEIVCVTAAWNGQFAHLTHRDVLGALMGLGIDRGG 126
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 158
+GDI+L G+ A+ L ++A +++ L +G V V+ L + RTK +
Sbjct: 127 VGDILLAGDT-AKILCDTKMAHFIMEELTMIGAVRVTTALGDLADIAPREERTKEIRATV 185
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218
ASLR+DA+A+AGF +SRS+ + I+ V++NW + ++ GD++S+ G+GR+++
Sbjct: 186 ASLRLDAIAAAGFGISRSRAADDIAADKVKLNWQSAGSASKNIKQGDVLSMRGRGRLEVT 245
Query: 219 EI-NSTRKGKFAVELIQYL 236
E+ T+KG+ +V L +Y
Sbjct: 246 EVRGQTKKGRISVVLHRYF 264
>gi|374709389|ref|ZP_09713823.1| RNA-binding S4 domain-containing protein [Sporolactobacillus
inulinus CASD]
Length = 257
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 99/179 (55%), Gaps = 4/179 (2%)
Query: 41 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GGY AER R + P SDP +A L + F +H + LG++LG+GI+R KI
Sbjct: 61 GGYEHAERARALLLPPYFEPDSDPFDLAYLDVRYPAKFGSVTHPELLGALLGSGISRNKI 120
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI-PLLALEYEPPRTKSFKTIE 158
GD+++ GE+ AQF+ V EL Y + L VG +SVSC I P L T S T+
Sbjct: 121 GDLLI-GEEAAQFICVKELEPYFMLHLTSVGKLSVSCRPILPKNLLHTADGWTYSEGTV- 178
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
+SLR+D L S + L R K I+ G +VNW V K +R GD++S+ G GR KI
Sbjct: 179 SSLRLDTLLSEIYHLPRVKASEAIARGLAKVNWEIVEKRNFDIREGDVISLRGHGRSKI 237
>gi|291533844|emb|CBL06957.1| lipoprotein signal peptidase [Megamonas hypermegale ART12/1]
Length = 418
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 117/219 (53%), Gaps = 1/219 (0%)
Query: 9 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 68
R+ +DFL P + + + + GGY AER + H + + ++
Sbjct: 34 RKFRATDFLDPYGCEIAETVVAHYDGISVDFFGGYIGAERQCANFVHEDFMGKPSYNISV 93
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
+ T N F SH D LG+++G GI RE+IGD+++ + + ++AD+++ +L +
Sbjct: 94 VKATWNDKFYRLSHRDVLGALMGLGIKREQIGDLLIT-LGMVKIICTTKMADFILQNLTQ 152
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
+ + VSC L + R K + ASLR+D++A++GF SRSK+ ++I ++
Sbjct: 153 ISSAKVSCELDNLGTIAPREERCKEITSTVASLRIDSIAASGFGASRSKMSSMIDAEKLK 212
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGK 227
+NW TV ++ GDI+S+ G+GR+++ E+ T K +
Sbjct: 213 LNWQTVKSASQMVKQGDIISIRGRGRLEVAEVRGTTKKR 251
>gi|219670055|ref|YP_002460490.1| RNA-binding S4 domain-containing protein [Desulfitobacterium
hafniense DCB-2]
gi|219540315|gb|ACL22054.1| RNA-binding S4 domain protein [Desulfitobacterium hafniense DCB-2]
Length = 265
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 107/199 (53%), Gaps = 7/199 (3%)
Query: 40 QGGYPQAERCR-LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
+GG+P AER R L V P+ L + P + AL T H LGS++G G+ RE
Sbjct: 66 EGGFPDAERVRFLMVEDPDVLDNVPSEIRALQATPADPRGKLDHRQVLGSLMGLGLKREV 125
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP--RTKSFKT 156
IGDI L E+ V E+AD+L++ +K G + R+ + + E P + K +
Sbjct: 126 IGDIRLT-EQCCFVAVAQEIADFLLSQWDKAGRERI---RVEAVEKDVEIPLEQGKERRI 181
Query: 157 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
AS R+DA+AS+GF +SR+ LI G V+ N V K ++ GDI+S G GR++
Sbjct: 182 TAASSRIDAVASSGFNVSRTMFQELIQQGKVKRNDRMVAKADLEVKPGDILSCRGYGRMR 241
Query: 217 IGEINSTRKGKFAVELIQY 235
+ E TRKG+ A +I Y
Sbjct: 242 LLEFQETRKGRMAWNVILY 260
>gi|123966750|ref|YP_001011831.1| S4-like domain-containing protein [Prochlorococcus marinus str. MIT
9515]
gi|123201116|gb|ABM72724.1| Uncharacterized conserved protein, contains S4-like domain
[Prochlorococcus marinus str. MIT 9515]
Length = 263
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 125/229 (54%), Gaps = 10/229 (4%)
Query: 12 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVA---- 67
+S F+ +LKE E L D K GGYP A++ +++ + + + +++
Sbjct: 38 FNSTFVCEEILKE----FENLNDFKFFVFGGYPSAQKSKIACFREDNVPDENELIKNFPA 93
Query: 68 -ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
+ + GNF F + DF + G+ E+IGDI G++GAQ ++ + L +
Sbjct: 94 KGILMKGNFLFDNATQDDFRSLLRDNGLIEERIGDIWTTGDRGAQGIIDDSKIEDLNEKV 153
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
+ +V V + L +L+ R+ K T+EAS R+DA+ASAGF++SR+K++ I G
Sbjct: 154 FFLRDVKVKIQIVDLDSLQIPVGRSQKLINTVEASTRLDAIASAGFRISRTKILERIETG 213
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 234
+++N TV K +L+ GD V + KG ++I ++ T++ ++ ++LI+
Sbjct: 214 MLKLNGKTVKKGTISLKVGDKVQLDNKGFVEILDLEMTKRERWKIKLIR 262
>gi|342218196|ref|ZP_08710820.1| S4 domain protein [Megasphaera sp. UPII 135-E]
gi|341590796|gb|EGS34026.1| S4 domain protein [Megasphaera sp. UPII 135-E]
Length = 261
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 12/229 (5%)
Query: 14 SDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSV---GHPEALTSDPDIVAA 68
S+F++P ++ E++ A EK+ ++ GGY AER RL+ + A+ D + A
Sbjct: 39 SEFVSPGAIQIGETICAHEKMLQLRVF--GGYEGAERVRLAFVDRTYEGAVQYD---IQA 93
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
I + ++ SH D LGS++ GI R + GDI++Q E A L+ A + L K
Sbjct: 94 CHIGWDSRYRLLSHRDVLGSLMSMGIERSRFGDILMQ-ESDAIVLLDTVTAQCVCAELHK 152
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
+ V+V+ L + + + K KT ASLR+DA+ ++GF +SR+K I V+
Sbjct: 153 IAMVTVTVEPYSLKDIVPKQEKVKEIKTTVASLRLDAITASGFGISRTKAAEAIKGERVQ 212
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
VNW V ++ GD++S+ GKGR+++ +I +RKG+ V L +Y+
Sbjct: 213 VNWLPVQSVSREVQVGDVISLRGKGRMEVADITGISRKGRTGVLLKRYM 261
>gi|90962019|ref|YP_535935.1| RNA binding protein [Lactobacillus salivarius UCC118]
gi|90821213|gb|ABD99852.1| RNA binding protein [Lactobacillus salivarius UCC118]
Length = 262
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 5/218 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 73
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKKQDVKVSFSGGYKNAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F +HG LG++ +G+ RE IGDII Q + QFL E++DY +++VG +
Sbjct: 97 PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V PL + + +SLR+D+L S F +SR NLI V++NW T
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 215
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 230
V + ++ GDI+S+ G GR++I + + TRK K +
Sbjct: 216 VARPDYEVKYGDILSIRGYGRLRIDDLLGVTRKDKLRI 253
>gi|29375583|ref|NP_814737.1| S4 domain-containing protein [Enterococcus faecalis V583]
gi|227517924|ref|ZP_03947973.1| ribosomal protein S4e [Enterococcus faecalis TX0104]
gi|227555111|ref|ZP_03985158.1| ribosomal protein S4e [Enterococcus faecalis HH22]
gi|229546848|ref|ZP_04435573.1| ribosomal protein S4e [Enterococcus faecalis TX1322]
gi|229548942|ref|ZP_04437667.1| ribosomal protein S4e [Enterococcus faecalis ATCC 29200]
gi|255971455|ref|ZP_05422041.1| S4 domain-containing protein [Enterococcus faecalis T1]
gi|255974070|ref|ZP_05424656.1| RNA-binding S4 [Enterococcus faecalis T2]
gi|256761759|ref|ZP_05502339.1| S4 domain-containing protein [Enterococcus faecalis T3]
gi|256852654|ref|ZP_05558025.1| S4 domain-containing protein [Enterococcus faecalis T8]
gi|256960185|ref|ZP_05564356.1| RNA-binding protein S4 [Enterococcus faecalis Merz96]
gi|256962573|ref|ZP_05566744.1| RNA-binding protein S4 [Enterococcus faecalis HIP11704]
gi|257077890|ref|ZP_05572251.1| RNA-binding protein S4 [Enterococcus faecalis JH1]
gi|257081254|ref|ZP_05575615.1| S4 domain-containing protein [Enterococcus faecalis E1Sol]
gi|257083912|ref|ZP_05578273.1| S4 domain-containing protein [Enterococcus faecalis Fly1]
gi|257086360|ref|ZP_05580721.1| RNA-binding protein S4 [Enterococcus faecalis D6]
gi|257089410|ref|ZP_05583771.1| S4 RNA binding protein [Enterococcus faecalis CH188]
gi|257415620|ref|ZP_05592614.1| RNA-binding protein S4 [Enterococcus faecalis ARO1/DG]
gi|257418591|ref|ZP_05595585.1| S4 RNA binding protein [Enterococcus faecalis T11]
gi|257421250|ref|ZP_05598240.1| S4 RNA binding protein [Enterococcus faecalis X98]
gi|293382550|ref|ZP_06628484.1| YlmH protein [Enterococcus faecalis R712]
gi|293387849|ref|ZP_06632388.1| YlmH protein [Enterococcus faecalis S613]
gi|294779255|ref|ZP_06744659.1| S4 domain protein [Enterococcus faecalis PC1.1]
gi|307268081|ref|ZP_07549469.1| S4 domain protein [Enterococcus faecalis TX4248]
gi|307272015|ref|ZP_07553281.1| S4 domain protein [Enterococcus faecalis TX0855]
gi|307275484|ref|ZP_07556626.1| S4 domain protein [Enterococcus faecalis TX2134]
gi|307278948|ref|ZP_07560007.1| S4 domain protein [Enterococcus faecalis TX0860]
gi|307289397|ref|ZP_07569351.1| S4 domain protein [Enterococcus faecalis TX0109]
gi|307290037|ref|ZP_07569961.1| S4 domain protein [Enterococcus faecalis TX0411]
gi|312901040|ref|ZP_07760331.1| S4 domain protein [Enterococcus faecalis TX0470]
gi|312904563|ref|ZP_07763721.1| S4 domain protein [Enterococcus faecalis TX0635]
gi|312906847|ref|ZP_07765844.1| S4 domain protein [Enterococcus faecalis DAPTO 512]
gi|312952727|ref|ZP_07771589.1| S4 domain protein [Enterococcus faecalis TX0102]
gi|312978898|ref|ZP_07790624.1| S4 domain protein [Enterococcus faecalis DAPTO 516]
gi|384518107|ref|YP_005705412.1| S4 domain-containing protein [Enterococcus faecalis 62]
gi|397699394|ref|YP_006537182.1| S4 domain protein [Enterococcus faecalis D32]
gi|421513308|ref|ZP_15960085.1| hypothetical protein A961_1192 [Enterococcus faecalis ATCC 29212]
gi|422685579|ref|ZP_16743795.1| S4 domain protein [Enterococcus faecalis TX4000]
gi|422689642|ref|ZP_16747746.1| S4 domain protein [Enterococcus faecalis TX0630]
gi|422692291|ref|ZP_16750313.1| S4 domain protein [Enterococcus faecalis TX0031]
gi|422694608|ref|ZP_16752599.1| S4 domain protein [Enterococcus faecalis TX4244]
gi|422703302|ref|ZP_16761124.1| S4 domain protein [Enterococcus faecalis TX1302]
gi|422705611|ref|ZP_16763407.1| S4 domain protein [Enterococcus faecalis TX0043]
gi|422713480|ref|ZP_16770230.1| S4 domain protein [Enterococcus faecalis TX0309A]
gi|422717493|ref|ZP_16774177.1| S4 domain protein [Enterococcus faecalis TX0309B]
gi|422721041|ref|ZP_16777646.1| S4 domain protein [Enterococcus faecalis TX0017]
gi|422722954|ref|ZP_16779503.1| S4 domain protein [Enterococcus faecalis TX2137]
gi|422727525|ref|ZP_16783966.1| S4 domain protein [Enterococcus faecalis TX0312]
gi|422729992|ref|ZP_16786387.1| S4 domain protein [Enterococcus faecalis TX0012]
gi|422735191|ref|ZP_16791465.1| S4 domain protein [Enterococcus faecalis TX1341]
gi|422868629|ref|ZP_16915167.1| S4 domain protein [Enterococcus faecalis TX1467]
gi|424679105|ref|ZP_18115936.1| S4 domain protein [Enterococcus faecalis ERV103]
gi|424682303|ref|ZP_18119078.1| S4 domain protein [Enterococcus faecalis ERV116]
gi|424684054|ref|ZP_18120782.1| S4 domain protein [Enterococcus faecalis ERV129]
gi|424686879|ref|ZP_18123541.1| S4 domain protein [Enterococcus faecalis ERV25]
gi|424690051|ref|ZP_18126587.1| S4 domain protein [Enterococcus faecalis ERV31]
gi|424692289|ref|ZP_18128792.1| S4 domain protein [Enterococcus faecalis ERV37]
gi|424698027|ref|ZP_18134335.1| S4 domain protein [Enterococcus faecalis ERV41]
gi|424700554|ref|ZP_18136738.1| S4 domain protein [Enterococcus faecalis ERV62]
gi|424705582|ref|ZP_18141612.1| S4 domain protein [Enterococcus faecalis ERV63]
gi|424712420|ref|ZP_18144603.1| S4 domain protein [Enterococcus faecalis ERV65]
gi|424716268|ref|ZP_18145581.1| S4 domain protein [Enterococcus faecalis ERV68]
gi|424721631|ref|ZP_18150713.1| S4 domain protein [Enterococcus faecalis ERV72]
gi|424723706|ref|ZP_18152661.1| S4 domain protein [Enterococcus faecalis ERV73]
gi|424729462|ref|ZP_18158063.1| S4 domain protein [Enterococcus faecalis ERV81]
gi|424735079|ref|ZP_18163552.1| S4 domain protein [Enterococcus faecalis ERV85]
gi|424751824|ref|ZP_18179845.1| S4 domain protein [Enterococcus faecalis ERV93]
gi|424757106|ref|ZP_18184870.1| S4 domain protein [Enterococcus faecalis R508]
gi|29343044|gb|AAO80807.1| S4 domain protein [Enterococcus faecalis V583]
gi|227074678|gb|EEI12641.1| ribosomal protein S4e [Enterococcus faecalis TX0104]
gi|227175779|gb|EEI56751.1| ribosomal protein S4e [Enterococcus faecalis HH22]
gi|229305963|gb|EEN71959.1| ribosomal protein S4e [Enterococcus faecalis ATCC 29200]
gi|229308013|gb|EEN74000.1| ribosomal protein S4e [Enterococcus faecalis TX1322]
gi|255962473|gb|EET94949.1| S4 domain-containing protein [Enterococcus faecalis T1]
gi|255966942|gb|EET97564.1| RNA-binding S4 [Enterococcus faecalis T2]
gi|256683010|gb|EEU22705.1| S4 domain-containing protein [Enterococcus faecalis T3]
gi|256711999|gb|EEU27036.1| S4 domain-containing protein [Enterococcus faecalis T8]
gi|256950681|gb|EEU67313.1| RNA-binding protein S4 [Enterococcus faecalis Merz96]
gi|256953069|gb|EEU69701.1| RNA-binding protein S4 [Enterococcus faecalis HIP11704]
gi|256985920|gb|EEU73222.1| RNA-binding protein S4 [Enterococcus faecalis JH1]
gi|256989284|gb|EEU76586.1| S4 domain-containing protein [Enterococcus faecalis E1Sol]
gi|256991942|gb|EEU79244.1| S4 domain-containing protein [Enterococcus faecalis Fly1]
gi|256994390|gb|EEU81692.1| RNA-binding protein S4 [Enterococcus faecalis D6]
gi|256998222|gb|EEU84742.1| S4 RNA binding protein [Enterococcus faecalis CH188]
gi|257157448|gb|EEU87408.1| RNA-binding protein S4 [Enterococcus faecalis ARO1/DG]
gi|257160419|gb|EEU90379.1| S4 RNA binding protein [Enterococcus faecalis T11]
gi|257163074|gb|EEU93034.1| S4 RNA binding protein [Enterococcus faecalis X98]
gi|291080098|gb|EFE17462.1| YlmH protein [Enterococcus faecalis R712]
gi|291082696|gb|EFE19659.1| YlmH protein [Enterococcus faecalis S613]
gi|294453622|gb|EFG22020.1| S4 domain protein [Enterococcus faecalis PC1.1]
gi|295113824|emb|CBL32461.1| Uncharacterized conserved protein, contains S4-like domain
[Enterococcus sp. 7L76]
gi|306498879|gb|EFM68373.1| S4 domain protein [Enterococcus faecalis TX0411]
gi|306499652|gb|EFM69015.1| S4 domain protein [Enterococcus faecalis TX0109]
gi|306504335|gb|EFM73546.1| S4 domain protein [Enterococcus faecalis TX0860]
gi|306507872|gb|EFM77000.1| S4 domain protein [Enterococcus faecalis TX2134]
gi|306511310|gb|EFM80314.1| S4 domain protein [Enterococcus faecalis TX0855]
gi|306515722|gb|EFM84249.1| S4 domain protein [Enterococcus faecalis TX4248]
gi|310627101|gb|EFQ10384.1| S4 domain protein [Enterococcus faecalis DAPTO 512]
gi|310629243|gb|EFQ12526.1| S4 domain protein [Enterococcus faecalis TX0102]
gi|310632076|gb|EFQ15359.1| S4 domain protein [Enterococcus faecalis TX0635]
gi|311288335|gb|EFQ66891.1| S4 domain protein [Enterococcus faecalis DAPTO 516]
gi|311291866|gb|EFQ70422.1| S4 domain protein [Enterococcus faecalis TX0470]
gi|315026977|gb|EFT38909.1| S4 domain protein [Enterococcus faecalis TX2137]
gi|315029690|gb|EFT41622.1| S4 domain protein [Enterococcus faecalis TX4000]
gi|315031713|gb|EFT43645.1| S4 domain protein [Enterococcus faecalis TX0017]
gi|315147952|gb|EFT91968.1| S4 domain protein [Enterococcus faecalis TX4244]
gi|315149523|gb|EFT93539.1| S4 domain protein [Enterococcus faecalis TX0012]
gi|315153077|gb|EFT97093.1| S4 domain protein [Enterococcus faecalis TX0031]
gi|315156850|gb|EFU00867.1| S4 domain protein [Enterococcus faecalis TX0043]
gi|315157636|gb|EFU01653.1| S4 domain protein [Enterococcus faecalis TX0312]
gi|315165134|gb|EFU09151.1| S4 domain protein [Enterococcus faecalis TX1302]
gi|315168033|gb|EFU12050.1| S4 domain protein [Enterococcus faecalis TX1341]
gi|315574255|gb|EFU86446.1| S4 domain protein [Enterococcus faecalis TX0309B]
gi|315577383|gb|EFU89574.1| S4 domain protein [Enterococcus faecalis TX0630]
gi|315581590|gb|EFU93781.1| S4 domain protein [Enterococcus faecalis TX0309A]
gi|323480240|gb|ADX79679.1| S4 domain protein [Enterococcus faecalis 62]
gi|329574343|gb|EGG55915.1| S4 domain protein [Enterococcus faecalis TX1467]
gi|397336033|gb|AFO43705.1| S4 domain protein [Enterococcus faecalis D32]
gi|401673562|gb|EJS79943.1| hypothetical protein A961_1192 [Enterococcus faecalis ATCC 29212]
gi|402349353|gb|EJU84304.1| S4 domain protein [Enterococcus faecalis ERV116]
gi|402349386|gb|EJU84336.1| S4 domain protein [Enterococcus faecalis ERV103]
gi|402362990|gb|EJU97500.1| S4 domain protein [Enterococcus faecalis ERV129]
gi|402365185|gb|EJU99611.1| S4 domain protein [Enterococcus faecalis ERV31]
gi|402366586|gb|EJV00956.1| S4 domain protein [Enterococcus faecalis ERV25]
gi|402373645|gb|EJV07716.1| S4 domain protein [Enterococcus faecalis ERV62]
gi|402373936|gb|EJV07984.1| S4 domain protein [Enterococcus faecalis ERV41]
gi|402378680|gb|EJV12518.1| S4 domain protein [Enterococcus faecalis ERV37]
gi|402379006|gb|EJV12827.1| S4 domain protein [Enterococcus faecalis ERV63]
gi|402380914|gb|EJV14653.1| S4 domain protein [Enterococcus faecalis ERV65]
gi|402388461|gb|EJV21900.1| S4 domain protein [Enterococcus faecalis ERV68]
gi|402390798|gb|EJV24119.1| S4 domain protein [Enterococcus faecalis ERV72]
gi|402393916|gb|EJV27122.1| S4 domain protein [Enterococcus faecalis ERV81]
gi|402397415|gb|EJV30433.1| S4 domain protein [Enterococcus faecalis ERV73]
gi|402404696|gb|EJV37312.1| S4 domain protein [Enterococcus faecalis ERV85]
gi|402405320|gb|EJV37917.1| S4 domain protein [Enterococcus faecalis ERV93]
gi|402407634|gb|EJV40151.1| S4 domain protein [Enterococcus faecalis R508]
Length = 260
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 3/221 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+V + + +T +SLR+D++ SA F +SR + LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
T+ L DIVS+ G GR++I E+ T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255
>gi|350269426|ref|YP_004880734.1| hypothetical protein OBV_10300 [Oscillibacter valericigenes
Sjm18-20]
gi|348594268|dbj|BAK98228.1| hypothetical protein OBV_10300 [Oscillibacter valericigenes
Sjm18-20]
Length = 265
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 122/229 (53%), Gaps = 8/229 (3%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+DFL+P E ++ L + + V GGY AER ++ + P+ L + +
Sbjct: 39 TDFLSPQEQASAEMLLHLAGVDGTEYVPLGGYEGAER-KIFLFLPDWLDAQSAAEQSPIR 97
Query: 72 TGNFGFQP---CSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
++P SH D LGS++G GI REK GDI++ G++ +V+ +AD+L+ S ++
Sbjct: 98 CLRAKYRPEYDLSHRDILGSLMGMGITREKTGDILV-GKESCDLIVLDSVADFLLQSWDQ 156
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
G +S + + L + + SLR+DA+A+ GFK++R K LI +G V+
Sbjct: 157 AGRAKLSVSAVGTADLSMPEESCEEVRDTVMSLRLDAVAATGFKMARGKAAALIGSGRVQ 216
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
VNW TK L GD VS G G+ K+ E+ T+KG+ ++ + +YL
Sbjct: 217 VNWLDCTKPDRLLGEGDTVSARGLGKFKVAEVGGVTKKGRTSLVIKRYL 265
>gi|326803766|ref|YP_004321584.1| S4 domain-containing protein [Aerococcus urinae ACS-120-V-Col10a]
gi|326651380|gb|AEA01563.1| S4 domain protein [Aerococcus urinae ACS-120-V-Col10a]
Length = 261
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 6/233 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
R ASS + L S FL P + K D++ + GGYPQAE R+ + +D
Sbjct: 26 RVASSFQPFL-SHFLDPREQAIVYSIIGKDEDIQVIDFGGYPQAEMRRMIIAPRYEEVND 84
Query: 63 PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
D ++ + I F H LG++LG G+ R +IGDII + QF + L D+
Sbjct: 85 GDFNISLIQINYAAKFNHIEHRQVLGTLLGQGLQRNRIGDII-HSDLDWQFFIDASLIDF 143
Query: 122 LITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
+ + ++++G VSV + ++ P +++ AS R+D + S GF LSRSK+ +
Sbjct: 144 VNSQIQRIGKVSVKLEAVDFADRIQVADPWQPLERSL-ASFRMDLVLSEGFNLSRSKVKS 202
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
I G V+ NW +T + T+ GDI+S+ GR+++ ++ ++KGK+ V+L
Sbjct: 203 AIEAGLVKYNWMPLTNSAQTVSEGDILSLRHHGRLRLDKVLKVSKKGKYRVQL 255
>gi|312793530|ref|YP_004026453.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180670|gb|ADQ40840.1| RNA-binding S4 domain protein [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 260
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 127/228 (55%), Gaps = 6/228 (2%)
Query: 13 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+SDFL+P +K ++ L K + + GGY +ER L++ + ++ +
Sbjct: 33 YSDFLSPFAIKYAVEVLLKSQNHILHRCWGGYEGSERNILAIFSSDFEEYAENLTYPIQT 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
SH LGS++G G+ R+KIGDI+++ E A V E+A Y++T+++K+G
Sbjct: 93 ILIEAKNNLSHRQILGSLIGNGLKRDKIGDILVK-ENSALVFVKDEIATYIVTNIDKIGK 151
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V C+ + ++ + S K I ASLRVD++ S GF +SR + +LI V
Sbjct: 152 EKVKCSIVENGQIDIKWFINNSSKRIVYTVASLRVDSVISHGFGISREEAADLIRQMKVA 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
VNW + K ++ GD++SV GR+KI ++ ++T+KG+ ++E++++
Sbjct: 212 VNWVYIDKPSYAVKEGDLLSVRHHGRLKIEKVLSTTKKGRISIEVLRF 259
>gi|256957094|ref|ZP_05561265.1| RNA-binding protein S4 [Enterococcus faecalis DS5]
gi|422711803|ref|ZP_16768730.1| S4 domain protein [Enterococcus faecalis TX0027]
gi|256947590|gb|EEU64222.1| RNA-binding protein S4 [Enterococcus faecalis DS5]
gi|315034230|gb|EFT46162.1| S4 domain protein [Enterococcus faecalis TX0027]
Length = 260
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 3/221 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+V + + +T +SLR+D++ SA F +SR + LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
T+ L DIVS+ G GR++I E+ T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEVKTKKEKFRVLL 255
>gi|89895631|ref|YP_519118.1| hypothetical protein DSY2885 [Desulfitobacterium hafniense Y51]
gi|89335079|dbj|BAE84674.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 268
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 106/199 (53%), Gaps = 7/199 (3%)
Query: 40 QGGYPQAERCR-LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
+GG+P AER R L V P+ L + P + AL T H LGS++G G+ RE
Sbjct: 69 EGGFPDAERVRFLVVADPDVLDNVPSEIRALQATTVDPRGKLDHRQVLGSLMGLGLKREV 128
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP--RTKSFKT 156
IGDI L E+ V E+AD+L++ +K G + R+ + E P + K +
Sbjct: 129 IGDIRLT-EQCCFVAVAQEIADFLLSQWDKAGRERI---RVEAVEQNVEIPLEQGKERRI 184
Query: 157 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
AS R+DA+AS+GF +SR+ LI G V+ N V K ++ GDI+S G GR++
Sbjct: 185 TAASSRIDAVASSGFNVSRTMFQELIQQGKVKRNDRMVAKADLEVKPGDILSCRGYGRMR 244
Query: 217 IGEINSTRKGKFAVELIQY 235
+ E TRKG+ A +I Y
Sbjct: 245 LLEFQETRKGRIAWNVILY 263
>gi|344996021|ref|YP_004798364.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964240|gb|AEM73387.1| RNA-binding S4 domain protein [Caldicellulosiruptor lactoaceticus
6A]
Length = 260
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 127/228 (55%), Gaps = 6/228 (2%)
Query: 13 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+SDFL+P +K ++ L K + + GGY +ER L++ + ++ +
Sbjct: 33 YSDFLSPFAIKYAVEVLLKNQNHILHRCWGGYEGSERNILAIFSSDFEEYAENLTYPIQT 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
SH LGS++G G+ R+KIGDI+++ E A V E+A Y++T+++K+G
Sbjct: 93 ILIEAKNNLSHRQILGSLIGNGLKRDKIGDILVK-ENSALVFVKDEIATYIVTNIDKIGK 151
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V C+ + ++ + S K I ASLRVD++ S GF +SR + +LI V
Sbjct: 152 EKVKCSIVENGQIDIKWFINNSSKRIVYTVASLRVDSVISHGFGISREEAADLIRQMKVA 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
VNW + K ++ GD++SV GR+KI ++ ++T+KG+ ++E++++
Sbjct: 212 VNWVYIDKPSYAVKEGDLLSVRHHGRLKIEKVLSTTKKGRISIEVLRF 259
>gi|227891037|ref|ZP_04008842.1| ribosomal protein S4e [Lactobacillus salivarius ATCC 11741]
gi|227867126|gb|EEJ74547.1| ribosomal protein S4e [Lactobacillus salivarius ATCC 11741]
Length = 262
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 5/218 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 73
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F +HG LG++ +G+ RE IGDII Q + QFL E++DY +++VG +
Sbjct: 97 PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V PL + + +SLR+D+L S F +SR NLI V++NW T
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 215
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 230
V + ++ GDI+S+ G GR++I + + TRK K +
Sbjct: 216 VARPDYEVKYGDILSIRGYGRLRIDDLLGVTRKDKLRI 253
>gi|301300395|ref|ZP_07206597.1| S4 domain protein [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851997|gb|EFK79679.1| S4 domain protein [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 262
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 5/218 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 73
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-TIFYPSYYEVQDDDFNLELIMIKY 96
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F +HG LG++ +G+ RE IGDII Q + QFL E++DY +++VG +
Sbjct: 97 PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V PL + + +SLR+D+L S F +SR NLI V++NW T
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 215
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 230
V + ++ GDI+S+ G GR++I + + TRK K +
Sbjct: 216 VARPDYEVKYGDILSIRGYGRLRIDDLLGITRKDKLRI 253
>gi|153853144|ref|ZP_01994553.1| hypothetical protein DORLON_00538 [Dorea longicatena DSM 13814]
gi|149753930|gb|EDM63861.1| S4 domain protein [Dorea longicatena DSM 13814]
Length = 251
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 134/241 (55%), Gaps = 9/241 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
++R A +R V+ SDFL L + + + GGY +ER +++V P+AL
Sbjct: 15 LSRLAYNRGIVIFSDFLNLNELNILHTTPKDMFLSQYKTYGGYDLSER-QMAVFLPDALY 73
Query: 61 SDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 116
D + I+ + F + +H D+LG+++ GI R K+GDII++ +KG F V
Sbjct: 74 YDYEYPIQIIEVTPSSKRFA-EDLTHRDYLGALMNLGIERSKVGDIIVEDQKGLIF-VKE 131
Query: 117 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 176
ELA+Y+ +L V + +V+ + + ++YEP R + K +S+R+D++ + + LSRS
Sbjct: 132 ELAEYIADNLTVVRHTNVNTSIGKGVKVDYEP-RFEELKGTVSSIRLDSVLALAYPLSRS 190
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVELIQY 235
K+ I G V VN +T NG L+ DI+SV GRI G ++ T+KG++ + + +Y
Sbjct: 191 KITAQIEAGKVFVNGKLITSNGYRLKDNDIISVRKMGRIAYDGILSETKKGRYLISVRKY 250
Query: 236 L 236
+
Sbjct: 251 I 251
>gi|385840602|ref|YP_005863926.1| RNA binding protein [Lactobacillus salivarius CECT 5713]
gi|300214723|gb|ADJ79139.1| RNA binding protein [Lactobacillus salivarius CECT 5713]
Length = 277
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 5/220 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSI 71
+ FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 51 THFLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMI 109
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +HG LG++ +G+ RE IGDII Q + QFL E++DY +++VG
Sbjct: 110 KYPVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGK 168
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
+ V PL + + +SLR+D+L S F +SR NLI V++NW
Sbjct: 169 IKVRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNW 228
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 230
TV + ++ GDI+S+ G GR++I + + TRK K +
Sbjct: 229 MTVARPDYEVKYGDILSIRGYGRLRIDDLLGITRKDKLRI 268
>gi|424671133|ref|ZP_18108148.1| S4 domain protein [Enterococcus faecalis 599]
gi|402359693|gb|EJU94318.1| S4 domain protein [Enterococcus faecalis 599]
Length = 260
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 3/221 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVKKVDKIGKI 154
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+V + + +T +SLR+D++ SA F +SR + LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
T+ L DIVS+ G GR++I E+ T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255
>gi|384512698|ref|YP_005707791.1| S4 domain-containing protein YlmH [Enterococcus faecalis OG1RF]
gi|430361444|ref|ZP_19426664.1| S4 domain-containing protein [Enterococcus faecalis OG1X]
gi|430368036|ref|ZP_19428018.1| S4 domain-containing protein [Enterococcus faecalis M7]
gi|327534587|gb|AEA93421.1| S4 domain-containing protein YlmH [Enterococcus faecalis OG1RF]
gi|429512465|gb|ELA02071.1| S4 domain-containing protein [Enterococcus faecalis OG1X]
gi|429516541|gb|ELA06031.1| S4 domain-containing protein [Enterococcus faecalis M7]
Length = 260
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 3/221 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPVYYIPEETDFGVVLFEII 95
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+V + + +T +SLR+D++ SA F +SR + LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
T+ L DIVS+ G GR++I E+ T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255
>gi|404329203|ref|ZP_10969651.1| RNA-binding S4 domain-containing protein [Sporolactobacillus vineae
DSM 21990 = SL153]
Length = 257
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 7/222 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
+DFL P + + + K DV+ GGYP AER R ++ P + + + ++
Sbjct: 34 TDFLDPRQQRVLELIIGKNDDVRVTFSGGYPDAERKR-ALLLPPYIPEEGEAFELTAVEV 92
Query: 74 NFG--FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F F SH + LG++ GTG+ R+KIGD+++ G++ AQF+ ++ YL +L VG
Sbjct: 93 AFASKFISLSHPELLGALTGTGVNRDKIGDLMVTGDR-AQFICTKDIEPYLRLNLTSVGK 151
Query: 132 VSVSCTRIPLLALEY-EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+VSC I L + + +S+ T+ SLR+DA+AS + LSR+K LI VR+N
Sbjct: 152 NAVSCQAIGKDELIHNQLNWVESWGTV-PSLRLDAVASEIYHLSRAKTAELIDRKRVRIN 210
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 231
W + + L GD++SV G GR KI ++ T+K K ++
Sbjct: 211 WELIDRRDFELAEGDLLSVRGYGRSKIISVDGLTKKHKIRLQ 252
>gi|335040583|ref|ZP_08533709.1| RNA-binding S4 domain protein [Caldalkalibacillus thermarum TA2.A1]
gi|334179553|gb|EGL82192.1| RNA-binding S4 domain protein [Caldalkalibacillus thermarum TA2.A1]
Length = 257
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 123/241 (51%), Gaps = 15/241 (6%)
Query: 1 MARRASSRREVLH---SDFLTPPVLKESMM---ALEKLADVKAVAQGGYPQAERCRLSVG 54
MA A RE H + FL P +E ++ + DVK GG+ QAER R +
Sbjct: 19 MAEWAELVRERHHPRLTPFLNP---REQLIIRSVVGHAPDVKVKLWGGFQQAERKRAWII 75
Query: 55 HPEAL--TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 112
P+ L T D +A L+I + + +H D LGS+LG G+ RE +GDI++ E Q
Sbjct: 76 -PDYLDVTWDEFQLALLNIKAS-QWVNVTHRDVLGSLLGMGLKREVVGDILITPE-TIQV 132
Query: 113 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 172
+VV E+ +Y+ L ++G V + AL ++ I +SLR+D + + +
Sbjct: 133 IVVREMEEYIRLHLTRIGRHQVRAEKADWSALTVPEEEWQAVTAIVSSLRLDVIVAECTR 192
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVE 231
SR+K V LI +G V+VNW + L+ GD +S+ G GR EI+ TRK KF +
Sbjct: 193 QSRAKAVQLIESGRVKVNWKVEDRPAEVLKEGDTISIKGYGRFLFQEIDRKTRKDKFRIH 252
Query: 232 L 232
L
Sbjct: 253 L 253
>gi|433545426|ref|ZP_20501780.1| hypothetical protein D478_17089 [Brevibacillus agri BAB-2500]
gi|432183249|gb|ELK40796.1| hypothetical protein D478_17089 [Brevibacillus agri BAB-2500]
Length = 257
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 11/221 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DF+ P ++ DVK A GGY AER R+ + HPE + +P+ +A L+I
Sbjct: 34 TDFVDPRQWHIMKSLTSQVRDVKISASGGYEGAERVRVLI-HPEYIEVEPEDFRLALLAI 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF-LVVPELADYLITSLEKVG 130
+ F H D +G++L G+ REK GD++ + G + +V E+AD++ T + ++
Sbjct: 93 KADQRFHTLEHRDVMGALLHAGMKREKFGDML--TDVGTCYAIVAEEVADFVCTQVTQIH 150
Query: 131 NVSVSCTRIPLLALEYEPPRTK-SFKTIEA-SLRVDALASAGFKLSRSKLVNLISNGDVR 188
SV R+ + + PP T+ + KTI S R+DA+ +SR+K + I G V+
Sbjct: 151 RTSVQFERVAWES--FTPPATRFAEKTITVPSPRIDAVIGEVHNMSRAKALVPIRAGKVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKF 228
VNW T L+ GD+VS++G GR KI EI TR G+
Sbjct: 209 VNWKVTEDPSTQLQQGDMVSLAGYGRFKILEIAGPTRSGRL 249
>gi|399052164|ref|ZP_10741729.1| hypothetical protein PMI08_03282 [Brevibacillus sp. CF112]
gi|398050030|gb|EJL42420.1| hypothetical protein PMI08_03282 [Brevibacillus sp. CF112]
Length = 257
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 11/221 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DF+ P ++ DVK A GGY AER R+ + HPE + +P+ +A L+I
Sbjct: 34 TDFVDPRQWHIMKSLTSQVRDVKISASGGYEGAERVRVLI-HPEYIEVEPEDFRLALLAI 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF-LVVPELADYLITSLEKVG 130
+ F H D +G++L G+ REK GD++ + G + +V E+AD++ T + ++
Sbjct: 93 KADQRFHTLEHRDVMGALLHAGMKREKFGDML--TDVGTCYAIVAEEVADFVCTQVTQIH 150
Query: 131 NVSVSCTRIPLLALEYEPPRTK-SFKTIEA-SLRVDALASAGFKLSRSKLVNLISNGDVR 188
SV R+ + + PP T+ + KTI S R+DA+ +SR+K + I G V+
Sbjct: 151 RTSVQFERVAWES--FTPPATRFAEKTITVPSPRIDAVIGEVHNMSRAKALVPIRAGKVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKF 228
VNW T L+ GD+VS++G GR KI EI TR G+
Sbjct: 209 VNWKVTEDPSTQLQQGDMVSLAGYGRFKILEIAGPTRSGRL 249
>gi|313895940|ref|ZP_07829494.1| S4 domain protein [Selenomonas sp. oral taxon 137 str. F0430]
gi|312975365|gb|EFR40826.1| S4 domain protein [Selenomonas sp. oral taxon 137 str. F0430]
Length = 264
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 111/198 (56%), Gaps = 3/198 (1%)
Query: 41 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GGY AER R + H + A T + ++ N F +H D LG+++G GI R +
Sbjct: 68 GGYAGAERQRAMLLHEDFAGTPGGYEIVCVTAAWNGQFAHLTHRDVLGALMGLGIDRGGV 127
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDI+L G+ A+ L ++ +++ L +G V V+ L + RTK + A
Sbjct: 128 GDILLAGDT-AKILCDTKMVQFIMEELTMIGAVRVTTALGDLADIAPREERTKEIRATVA 186
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+DA+A+AGF +SRS+ + I+ V++NW + ++ GD++S+ G+GR+++ E
Sbjct: 187 SLRLDAIAAAGFGISRSRAADDIAADKVKLNWQSAGSASKNIKQGDVLSMRGRGRLEVTE 246
Query: 220 I-NSTRKGKFAVELIQYL 236
+ T+KG+ +V L +Y
Sbjct: 247 VRGQTKKGRISVVLHRYF 264
>gi|417810107|ref|ZP_12456787.1| ribosomal protein S4e [Lactobacillus salivarius GJ-24]
gi|335349979|gb|EGM51477.1| ribosomal protein S4e [Lactobacillus salivarius GJ-24]
Length = 262
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 108/218 (49%), Gaps = 5/218 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 73
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F HG LG++ +G+ RE IGDII Q + QFL E++DY +++VG +
Sbjct: 97 PVKFTSLIHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V PL + + +SLR+D+L S F +SR NLI V++NW T
Sbjct: 156 VRLEDTPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 215
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 230
V + ++ GDI+S+ G GR++I + + TRK K +
Sbjct: 216 VARPDYEVKYGDILSIRGYGRLRIDDLLGVTRKNKLRI 253
>gi|299144086|ref|ZP_07037166.1| putative YlmH protein [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518571|gb|EFI42310.1| putative YlmH protein [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 257
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD 64
+++R + +DFL P K + L K D+ GGY +ER + + D D
Sbjct: 32 SANRHSIQSTDFLDPYERKIVISILNKFDDISYSIDGGYSNSERAVIYIFPNYMYDIDFD 91
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
V LS NF F +H D LGSIL GI R K+GDI+ V E+ YL
Sbjct: 92 DVEVLSFKNNFEF---THKDVLGSILSLGIDRRKVGDIVFNSN-YCHIFVKSEIFKYLRF 147
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRSKLVNLIS 183
+L KV ++ + + EP T + I +SLR+D S+ KLSR+ NLI
Sbjct: 148 NLGKVKRNNIKFEKAEFI----EPTLTYDEYTFIISSLRLDTFLSSVLKLSRTAASNLIE 203
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
+ V+VN+ +K + GD++SV G GRI I TRK ++ V++
Sbjct: 204 SDKVKVNFRKESKGSNKVNIGDLISVRGFGRIFFDNIEGYTRKDRYIVKV 253
>gi|423073771|ref|ZP_17062508.1| S4 domain protein [Desulfitobacterium hafniense DP7]
gi|361855393|gb|EHL07369.1| S4 domain protein [Desulfitobacterium hafniense DP7]
Length = 265
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 106/199 (53%), Gaps = 7/199 (3%)
Query: 40 QGGYPQAERCR-LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
+GG+ AER R L V P+ L + P + AL T H LGS++G G+ RE
Sbjct: 66 EGGFSDAERVRFLVVADPDVLDNVPSEIRALQATPTDPRGKLDHRQVLGSLMGLGLKREV 125
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP--RTKSFKT 156
IGDI L E+ V E+AD+L++ +K G + R+ + + E P + K +
Sbjct: 126 IGDIRLT-EQCCFVAVAQEIADFLLSQWDKAGRERI---RVEAVEQDVEIPLEQGKERRI 181
Query: 157 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
AS R+DA+AS+GF +SR+ LI G V+ N V K ++ GDI+S G GR++
Sbjct: 182 TAASSRIDAVASSGFNVSRTMFQELIQQGKVKRNDRMVAKADLEVKPGDILSCRGYGRMR 241
Query: 217 IGEINSTRKGKFAVELIQY 235
+ E TRKG+ A +I Y
Sbjct: 242 LLEFQETRKGRIAWNVILY 260
>gi|126696880|ref|YP_001091766.1| S4-like domain-containing protein [Prochlorococcus marinus str. MIT
9301]
gi|126543923|gb|ABO18165.1| Uncharacterized conserved protein, contains S4-like
domain-containing protein [Prochlorococcus marinus str.
MIT 9301]
Length = 263
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 128/242 (52%), Gaps = 10/242 (4%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL------SVG 54
+A A E + F + V +E + E L D K GG+ ++R R+ ++
Sbjct: 23 IANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIYGGFSSSQRSRIACFRGDNIP 82
Query: 55 HPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 113
+AL S+ P + I GNF F + DF ++ G+ + K+GDI G++GAQ +
Sbjct: 83 EEDALKSNFP--AQGIKINGNFLFDNATQDDFRSLLIKNGVNQLKVGDIWTIGDRGAQGI 140
Query: 114 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEASLRVDALASAGFK 172
+ ++L + + +V V + + L+ R+K T+EAS R+DA+ASAGF+
Sbjct: 141 IDNLDIEHLDEKIFYLRDVKVKINVVGIDELQIPSGRSKKLVNTVEASTRLDAIASAGFR 200
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+SR+K++ I NG +R+N + V K L+ GD + + KG I+I + T++ ++ V+L
Sbjct: 201 VSRTKIIERIENGMLRLNGSKVNKPTINLKIGDKLELENKGFIEILNLEITKRERWKVKL 260
Query: 233 IQ 234
++
Sbjct: 261 LR 262
>gi|335357085|ref|ZP_08548955.1| RNA binding protein [Lactobacillus animalis KCTC 3501]
Length = 260
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 7/223 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+ FL P + L+ +K A+GG+ QAER RL + +P+ + D + L I
Sbjct: 36 THFLDPRQQHIAQFLLQADDMIKVKAEGGFAQAERKRL-LFYPDYYEPQEKDFELQLLEI 94
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +HG LG++ +G+ RE +GDII ++ Q +V ++DYL+ +E++G
Sbjct: 95 NYPTKFVSLTHGQILGTLANSGLEREVLGDIITDSQRW-QIVVQKNISDYLLQQVERIGK 153
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEAS-LRVDALASAGFKLSRSKLVNLISNGDVRVN 190
++V +PL P +T+ AS LR+D + +A + +SR+++ LI+ V++N
Sbjct: 154 INVRLEEMPLTQ-RLVPNNDWELETVSASSLRIDTVIAAVYNISRNRVKELINAKKVQLN 212
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
W +TK T L DIVSV G GRIK+ ++ +++GK E+
Sbjct: 213 WMVLTKPDTELGVLDIVSVRGFGRIKLIDVLGKSKRGKLRCEV 255
>gi|123969089|ref|YP_001009947.1| S4-like domain-containing protein [Prochlorococcus marinus str.
AS9601]
gi|123199199|gb|ABM70840.1| Uncharacterized conserved protein, contains S4-like
domain-containing protein [Prochlorococcus marinus str.
AS9601]
Length = 263
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 127/242 (52%), Gaps = 10/242 (4%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL------SVG 54
+A A E + F + V +E + E L D K GG+ ++R R+ ++
Sbjct: 23 IANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIYGGFSSSQRSRIACFRGDNIP 82
Query: 55 HPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 113
+AL S+ P + I GNF F + DF ++ G+ + K+GDI G++GAQ +
Sbjct: 83 EEDALKSNFP--AQGIKINGNFLFDNATQDDFRSLLIENGVNQIKVGDIWTIGDRGAQGI 140
Query: 114 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEASLRVDALASAGFK 172
+ +L + + +V V + + L+ R+K T+EAS R+DA+ASAGF+
Sbjct: 141 IDNSNIKHLDEKIFYLRDVKVKVNVVGIDELQIPSGRSKKLVNTVEASTRLDAIASAGFR 200
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+SR+K++ I NG +R+N + V K L+ GD + + KG I+I + T++ ++ V+L
Sbjct: 201 VSRTKIIERIENGMLRLNGSKVNKPTINLKIGDKLELENKGFIEILNLEITKRERWKVKL 260
Query: 233 IQ 234
++
Sbjct: 261 LR 262
>gi|420161635|ref|ZP_14668399.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
gi|420161741|ref|ZP_14668503.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
gi|394744748|gb|EJF33667.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
gi|394745173|gb|EJF34069.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
Length = 263
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 14/241 (5%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR--LSVG 54
+ R+A + +DFL P LE L ++K GGY AE R L
Sbjct: 23 LLRQAHDEYRPILTDFLNP----RQRYILETLINGDDEIKVNFWGGYEDAESQRGLLVPS 78
Query: 55 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 114
+ + +D D+ + I F H D LG+++ +G+ R +IGDII +K Q +V
Sbjct: 79 YYDWNINDFDL-KVIQINYPIKFAELHHSDILGALINSGLQRNRIGDIITDEQKNWQIIV 137
Query: 115 VPELADYLITS--LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 172
+A ++ S LE++G V V + + + + +T+ ASLR+D + + G+
Sbjct: 138 TNPIAQFVQQSPDLERIGRVKVRYLEVDIRDVLHPLQDYLLEETLAASLRLDIIVANGYN 197
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVE 231
+SRSK LI +G V++NWT + + + D++SV GR+KI EIN T+K K+ +
Sbjct: 198 ISRSKAKELIEHGSVKINWTVMDRPDEVVAINDLISVRRYGRLKITEINGQTKKDKWRIS 257
Query: 232 L 232
L
Sbjct: 258 L 258
>gi|295398667|ref|ZP_06808691.1| S4 domain-containing protein YlmH [Aerococcus viridans ATCC 11563]
gi|294973102|gb|EFG48905.1| S4 domain-containing protein YlmH [Aerococcus viridans ATCC 11563]
Length = 263
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 12/227 (5%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSDPDIVAALSITG 73
FL P + M + + ++ GGYP AE RC L+ + E +D +I I
Sbjct: 39 FLNPREVAIVSMIIGQDDEIHYEFFGGYPNAENQRCVLAPTYYEIQPADFEI-TPFDIHY 97
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F H LG+ILG G+ R +IGDII GEK QF V ++AD+L ++K+G
Sbjct: 98 ASKFNTIEHRQILGTILGQGVERNRIGDIIQAGEKW-QFFVDEKIADFLSFEMDKIGGSK 156
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V +I +P ++ +E +SLR D + S GF++ R+K +LI G ++N
Sbjct: 157 VRLVKIDHFDQISQP--KSDWQPMEITLSSLRFDTIISDGFRIPRAKAKSLIEGGAAKLN 214
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKF--AVELIQ 234
W V L GDI SV G GR+K + T+KGK A+E+I+
Sbjct: 215 WAQVQDAKRQLNPGDIASVRGYGRLKYVATQMETKKGKIRVAIEIIK 261
>gi|78779838|ref|YP_397950.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9312]
gi|78713337|gb|ABB50514.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9312]
Length = 263
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 127/242 (52%), Gaps = 10/242 (4%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL------SVG 54
+A A E + F + V +E E L D K GG+ ++R R+ ++
Sbjct: 23 IANLAYKHWETYWTGFNSTYVCEEISKDFENLNDFKFFVYGGFSSSQRSRIACFRGDNIP 82
Query: 55 HPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 113
+AL S+ P + I GNF F + DF ++ G+ + K+GDI G++GAQ +
Sbjct: 83 EEDALKSNFP--AQGIKINGNFLFDNATQDDFRSLLIENGVHKVKVGDIWTIGDRGAQGI 140
Query: 114 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEASLRVDALASAGFK 172
+ ++L + + +V V + + L+ RTK T+EAS R+DA+ASAGF+
Sbjct: 141 IDNLDIEHLNEKIFYLRDVKVKINLVGIDELQIPSGRTKKLVNTVEASTRLDAIASAGFR 200
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+SR+K++ I NG +++N + V K L+ GD + + KG I+I + T++ ++ V+L
Sbjct: 201 ISRTKIIERIENGMLKLNGSKVNKPTINLKIGDKLELENKGFIEILNLEITKRERWKVKL 260
Query: 233 IQ 234
++
Sbjct: 261 LR 262
>gi|422699560|ref|ZP_16757424.1| S4 domain protein [Enterococcus faecalis TX1342]
gi|315171938|gb|EFU15955.1| S4 domain protein [Enterococcus faecalis TX1342]
Length = 260
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 3/221 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F SHG LG+++ G+ RE G+II G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGNIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+V + + +T +SLR+D++ SA F +SR + LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
T+ L DIVS+ G GR++I E+ T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255
>gi|346306279|ref|ZP_08848437.1| hypothetical protein HMPREF9457_00146 [Dorea formicigenerans
4_6_53AFAA]
gi|345900084|gb|EGX69912.1| hypothetical protein HMPREF9457_00146 [Dorea formicigenerans
4_6_53AFAA]
Length = 251
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 123/236 (52%), Gaps = 7/236 (2%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD 64
A SR V SDFL L + + GGY AER ++ P+AL D
Sbjct: 19 AFSRDIVTFSDFLNLNELNILHRTPKDQFKARFETYGGYELAER-QMVAFLPDALYYDYG 77
Query: 65 I-VAALSITG-NFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
+ AL I N F + +H D+LG+I+ G +R KIGDII Q + GA V E++DY
Sbjct: 78 YPMQALKICPVNKRFAEDLTHRDYLGAIMNLGTSRTKIGDII-QTDDGAIVFVKEEISDY 136
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
++ +L ++ + +++ R L + YE + K S+R+D + S + LSRSKL
Sbjct: 137 IMKNLTRIRHTTITVERRELSDISYES-HFEELKGTVPSVRLDTVLSVAYPLSRSKLTTY 195
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVELIQYL 236
I V VN +T NG L GD++SV G GRI G ++ T+KG++ + L +Y+
Sbjct: 196 IEAAKVFVNGKLITNNGYHLNEGDLISVRGLGRIAYAGILSETKKGRYMISLRKYI 251
>gi|422739827|ref|ZP_16794993.1| S4 domain protein [Enterococcus faecalis TX2141]
gi|315144386|gb|EFT88402.1| S4 domain protein [Enterococcus faecalis TX2141]
Length = 260
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 3/221 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + +D+ G Y QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGSYEQAERKRCLIYPAYYMPQETDFGVVLFEII 95
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+V + + +T +SLR+D++ SA F +SR + LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
T+ L DIVS+ G GR++I E+ T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255
>gi|300859623|ref|ZP_07105711.1| S4 domain protein [Enterococcus faecalis TUSoD Ef11]
gi|422730879|ref|ZP_16787260.1| S4 domain protein [Enterococcus faecalis TX0645]
gi|428766509|ref|YP_007152620.1| S4 domain protein [Enterococcus faecalis str. Symbioflor 1]
gi|300850441|gb|EFK78190.1| S4 domain protein [Enterococcus faecalis TUSoD Ef11]
gi|315162934|gb|EFU06951.1| S4 domain protein [Enterococcus faecalis TX0645]
gi|427184682|emb|CCO71906.1| S4 domain protein [Enterococcus faecalis str. Symbioflor 1]
Length = 260
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 3/221 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + +D+ G Y QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGSYEQAERKRCLIYPAYYMPEETDFGVVLFEII 95
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F SHG LG+++ G+ RE GDII G+K Q + E+A +++ ++K+G +
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDIISDGDKW-QVFIAQEVAGFVVNQVDKIGKI 154
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+V + + +T +SLR+D++ SA F +SR + LI +G V+VNWT
Sbjct: 155 TVRLEERDYTQILIPKDGWQEERTTMSSLRLDSVISAVFNISRQRSKQLIESGKVKVNWT 214
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
T+ L DIVS+ G GR++I E+ T+K KF V L
Sbjct: 215 ETTRPDFALDLLDIVSIRGFGRLQIQELEGKTKKEKFRVLL 255
>gi|417788480|ref|ZP_12436163.1| hypothetical protein, contains S4-like RNA binding domain
[Lactobacillus salivarius NIAS840]
gi|334308657|gb|EGL99643.1| hypothetical protein, contains S4-like RNA binding domain
[Lactobacillus salivarius NIAS840]
Length = 262
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 5/218 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 73
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F +HG LG++ +G+ RE IGDII + + QFL E++DY +++VG +
Sbjct: 97 PVKFTSLTHGQILGTLANSGLDREVIGDIIERNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V PL + + +SLR+D+L S F +SR NLI V++NW T
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 215
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 230
V + ++ GDI+S+ G GR++I + + TRK K +
Sbjct: 216 VARPDYEVKYGDILSIRGYGRLRIDDLLGVTRKDKLRI 253
>gi|312127591|ref|YP_003992465.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311777610|gb|ADQ07096.1| RNA-binding S4 domain protein [Caldicellulosiruptor hydrothermalis
108]
Length = 260
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 6/228 (2%)
Query: 13 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 71
+SDFL+P +K ++ L K + + + GGY +ER L++ + ++ +
Sbjct: 33 YSDFLSPFAIKYAVEVLLKNQNHILHRSWGGYKGSERNILALFSSDFEEYAENLTYPIQT 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
SH LGS +G G+ R+KIGDI+++ E A V E+A Y++T+++K+G
Sbjct: 93 ILIEAKNNLSHRQILGSFIGNGLKRDKIGDILVK-ENSALVFVKDEIATYIVTNIDKIGK 151
Query: 132 VSVSCTRIPLLALE---YEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V C+ + ++ + +K ASLRVD++ S GF +SR +LI V
Sbjct: 152 EKVKCSLVENNQIDIKWFISDNSKRVVYTVASLRVDSVISHGFGISREAAADLIKQMKVA 211
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
VNW + K ++ GD+VSV GR+KI ++ ++T+ G+ ++E++++
Sbjct: 212 VNWVYIDKPSYAVKEGDLVSVRHHGRLKIEKVLSTTKNGRISIEVLRF 259
>gi|365157067|ref|ZP_09353348.1| hypothetical protein HMPREF1015_00758 [Bacillus smithii 7_3_47FAA]
gi|363625801|gb|EHL76812.1| hypothetical protein HMPREF1015_00758 [Bacillus smithii 7_3_47FAA]
Length = 258
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 112/221 (50%), Gaps = 5/221 (2%)
Query: 15 DFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITG 73
DFL P + L K +V GG QAER R + P D VA I
Sbjct: 36 DFLDPREQQILSSLLGKNTEVNVSFFGGTVQAERKRALLYPPYFSVQQEDFQVALFEILY 95
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F +H D LGS++G G+ REK GDI L E QFLV E+AD++ + +VG S
Sbjct: 96 PQKFVVLNHRDVLGSLMGLGLRREKFGDI-LAKEGRFQFLVAAEMADFVKLNFRQVGKAS 154
Query: 134 VSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
V L A+E E + +T +SLR+D + SA KLSR K+ +I +G V+VNW
Sbjct: 155 VQLEEKKLEEAIESEES-WQPVQTTVSSLRLDVMISAYAKLSRQKVQTMIKSGLVKVNWK 213
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
V GD++SV GKGR K+ I+ T+K K+ + L
Sbjct: 214 VVDNPAFLCEEGDVLSVRGKGRCKLLSIDDKTKKEKWRITL 254
>gi|418961536|ref|ZP_13513422.1| RNA binding protein [Lactobacillus salivarius SMXD51]
gi|380344068|gb|EIA32415.1| RNA binding protein [Lactobacillus salivarius SMXD51]
Length = 262
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 5/218 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 73
FL P + + K DVK GGY ER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENTERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F +HG LG++ +G+ RE IGDII Q + QFL E++DY +++VG +
Sbjct: 97 PAKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTW-QFLCEKEVSDYFRLQIDRVGKIK 155
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V PL + + +SLR+D+L S F +SR NLI V++NW T
Sbjct: 156 VRLEDAPLDEIVVPELNWQEKMVTSSSLRIDSLVSVTFNISRESSKNLIKAEKVQLNWMT 215
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAV 230
V + ++ GDI+S+ G GR++I + + TRK K +
Sbjct: 216 VARPDYEVKYGDILSIRGYGRLRIDDLLGVTRKDKLRI 253
>gi|325288681|ref|YP_004264862.1| RNA-binding S4 domain-containing protein [Syntrophobotulus
glycolicus DSM 8271]
gi|324964082|gb|ADY54861.1| RNA-binding S4 domain protein [Syntrophobotulus glycolicus DSM
8271]
Length = 265
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 122/239 (51%), Gaps = 10/239 (4%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL----SVGHPE-AL 59
A S+ + ++ FL + L + A + + GGY A R L +PE A
Sbjct: 30 AESKNILENTKFLNEREQDLAERMLPECAQFRYLFHGGYESASRKVLVFFPDYMNPEQAF 89
Query: 60 TSDPDIVAALSITGNF-GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
+ + +A I + SH DFLGS+LG GI RE IGDI++ GE A +V+ E+
Sbjct: 90 QGEENCLAC--IRAEYPADNELSHRDFLGSLLGCGIKREAIGDILV-GEGSADIVVLKEI 146
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
YL+ + E V V V I L+ + + K ASLR+D +ASAGF +SR K
Sbjct: 147 LPYLLVNFEMVARVKVHVGEITAAELQVPEAKFRLIKDTVASLRLDNIASAGFAVSREKA 206
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
I G V +N TK + G+++S G G+IK+ +I N T+KG+ A+ +++YL
Sbjct: 207 SAGIKGGKVALNSLECTKADKLVSEGEVISWRGMGKIKLQQIGNQTKKGRTAIVVLRYL 265
>gi|104773831|ref|YP_618811.1| RNA binding protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|103422912|emb|CAI97574.1| Putative RNA binding protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 265
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 9/222 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 70
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 131 NVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V V PL +LE E ++ + +S+R+DA+ +A SRS++ + G+VR+
Sbjct: 156 PVKVRLEEKPLKDSLEAED-NSEIISAVASSMRLDAVLAALSNKSRSQVKEALEAGEVRL 214
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
NW K + L+ GDI+S+ GR+K+ + ++KG+ VE
Sbjct: 215 NWHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256
>gi|313123447|ref|YP_004033706.1| cell division protein, s4-like domain [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280010|gb|ADQ60729.1| Cell division protein, S4-like domain [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 265
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 7/221 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 70
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGEEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYHVQLFE 95
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V V PL ++ + +S+R+DA+ +A SRS++ + G+VR+N
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIITAVASSMRLDAVLAALSNKSRSQVKEALEAGEVRLN 215
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
W K + L+ GDI+S+ GR+K+ + ++KG+ VE
Sbjct: 216 WHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256
>gi|422845429|ref|ZP_16892139.1| S4 domain protein [Lactobacillus delbrueckii subsp. lactis DSM
20072]
gi|325684357|gb|EGD26526.1| S4 domain protein [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 265
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 7/221 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 70
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGEEAIMQAFGGYEEAEKCRLYISLEWENLRPDDYHVQLFE 95
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V V PL ++ + +S+R+DA+ +A SRS++ + G+VR+N
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIITAVASSMRLDAVLAALSNKSRSQVKEALEAGEVRLN 215
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
W K + L+ GDI+S+ GR+K+ + ++KG+ VE
Sbjct: 216 WHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256
>gi|452974556|gb|EME74376.1| RNA-binding protein YlmH [Bacillus sonorensis L12]
Length = 258
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 9/220 (4%)
Query: 14 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDI-VAAL 69
+DFL P V+ S++ + +VK GG+ +AER R ++ +PE A S D + A
Sbjct: 35 TDFLDPREQVILNSLVG--QPDEVKLGFFGGFSEAERKR-AILYPEYAEPSAEDFQLQAY 91
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ F H + LGS++G G+ R+K GD+I G QF+ E+AD++ + L ++
Sbjct: 92 EVLYPQKFASIEHRELLGSLMGIGLKRQKFGDLIYAG-GIWQFVCSEEVADFVFSQLGQI 150
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
G V VS +IPL L+ + +SLR+D++ SA +LSR K L+ NG V+V
Sbjct: 151 GKVKVSLEKIPLSKLKVPEQDVEIMDDTVSSLRLDSVCSAVSRLSRQKAQALVKNGLVKV 210
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 228
NW + +L GD +SV G GR + I+ T+KGK+
Sbjct: 211 NWKVIEDPSYSLAEGDKLSVRGFGRFTLKSIDGKTKKGKW 250
>gi|385815458|ref|YP_005851849.1| Cell-division protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|325125495|gb|ADY84825.1| Cell-division protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 265
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 7/221 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 70
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V V PL ++ + +S+R+DA +A SRS++ + G+VR+N
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIISAVASSMRLDAFLAALSNKSRSQVKEALEAGEVRLN 215
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
W K + L+ GDI+S+ GR+K+ + ++KG+ VE
Sbjct: 216 WHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256
>gi|116513838|ref|YP_812744.1| cell division protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
gi|418029212|ref|ZP_12667760.1| hypothetical protein LDBUL1632_00554 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|116093153|gb|ABJ58306.1| Cell division protein, S4-like domain [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|354690930|gb|EHE90872.1| hypothetical protein LDBUL1632_00554 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 265
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 7/221 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 70
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V V PL ++ + +S+R+DA+ +A SRS++ + G+VR+N
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIISAVASSMRLDAVLAALSNKSRSQVKEALEAGEVRLN 215
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
W K + L+ GDI+S+ GR+K+ + ++KG+ VE
Sbjct: 216 WHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256
>gi|339634154|ref|YP_004725795.1| RNA-binding S4 domain-containing protein [Weissella koreensis KACC
15510]
gi|338853950|gb|AEJ23116.1| RNA-binding S4 domain-containing protein [Weissella koreensis KACC
15510]
Length = 263
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 121/241 (50%), Gaps = 14/241 (5%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR--LSVG 54
+ R+A + ++FL P LE L ++K GGY AE R L
Sbjct: 23 LLRQAHDEYRPILTNFLNP----RQRYILETLINGDDEIKVNFWGGYEDAESQRGLLVPS 78
Query: 55 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 114
+ + +D D+ + I F H D LG+++ +G+ R +IGDII +K Q +V
Sbjct: 79 YYDWNINDFDL-KVIQINYPIKFAELHHSDILGALINSGLQRNRIGDIITDEQKNWQIIV 137
Query: 115 VPELADYLITS--LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 172
+A ++ S LE++G V V + + + + +T+ ASLR+D + + G+
Sbjct: 138 TNPIAQFVQQSPDLERIGRVKVRYLEVDIRDVLHPLQDYLLEETLAASLRLDIIVANGYN 197
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVE 231
+SRSK LI +G V++NWT + + + D++SV GR+KI EIN T+K K+ +
Sbjct: 198 ISRSKAKELIEHGSVKINWTVMDRPDEVVAINDLISVRRYGRLKITEINGQTKKDKWRIS 257
Query: 232 L 232
L
Sbjct: 258 L 258
>gi|403386619|ref|ZP_10928676.1| RNA-binding protein [Clostridium sp. JC122]
Length = 258
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 10/235 (4%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD 64
A +V++S F + + ++EK D K G + + ER +S+ E + P
Sbjct: 29 AEKTNKVVYSRFFIYKGIYNKLKSMEKSIDAKIYCNGIFDECERVMISISSYEIPSYYP- 87
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
+ L I F+ SH D+LGSI+ GI RE +GD+I+Q + A VV E+ D+LI
Sbjct: 88 -MVLLKIVNKSKFKNLSHKDYLGSIMAQGIKRELLGDLIVQ-DNSAYVPVVEEIVDFLIL 145
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNL 181
+L +G C I L P+ +F+ I SLR+D + S+ +SRSK ++L
Sbjct: 146 NLNSIG--KCPCEVIELQDNVLNIPKI-NFEEKIVIVTSLRLDNIISSICNISRSKALDL 202
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 235
I G V +N+ TK + DIV++ G+ K+GE I T +F + + +Y
Sbjct: 203 IQCGKVLINYAEETKKDKIIIKEDIVTIRTYGKFKVGEVIGKTNSDRFKISIKKY 257
>gi|239826539|ref|YP_002949163.1| RNA-binding S4 domain-containing protein [Geobacillus sp. WCH70]
gi|239806832|gb|ACS23897.1| RNA-binding S4 domain protein [Geobacillus sp. WCH70]
Length = 257
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 3/221 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + + +V+ GG P ER R + P +D D +A +
Sbjct: 34 TDFLDPREQQIVQSVIGRDEEVRIAFFGGAPFVERKRALLFPPYFQPADEDYEIALFEVH 93
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F H LG+++ G+ R K GDI+++ E+ QFL E+ADY+ L +G
Sbjct: 94 YPSKFISLEHRQVLGALMSLGLRRGKFGDILMKEER-VQFLAANEVADYIRLHLHAIGKA 152
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+VS + PL + + + +SLR+DA+ S F +SR K+ + I NG V+VNW
Sbjct: 153 NVSVEKRPLTEIITLEEKWQDTTITASSLRLDAILSQAFHVSRQKIQSFIENGFVKVNWK 212
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
V + + GDI+S G GR KI I T+K K+ + +
Sbjct: 213 IVEQAHFECQQGDILSARGFGRCKIISIEGKTKKEKWRIRI 253
>gi|410657330|ref|YP_006909701.1| hypothetical protein DHBDCA_p687 [Dehalobacter sp. DCA]
gi|410660368|ref|YP_006912739.1| hypothetical protein DCF50_p747 [Dehalobacter sp. CF]
gi|409019685|gb|AFV01716.1| hypothetical protein DHBDCA_p687 [Dehalobacter sp. DCA]
gi|409022724|gb|AFV04754.1| hypothetical protein DCF50_p747 [Dehalobacter sp. CF]
Length = 267
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 107/202 (52%), Gaps = 7/202 (3%)
Query: 41 GGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNFGFQP-CSHGDFLGSILGTGIA 95
GGY AER L PE + D + I + SH DFLGS++G GI
Sbjct: 67 GGYEGAERTVLVFLPDYLEPEQVIQDDEYCPLAFIRAEYPADSGLSHRDFLGSLMGAGIK 126
Query: 96 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 155
RE +GDI++ GE +V+ E+ +LI +LE VG V + IP L+ + K
Sbjct: 127 RETVGDILV-GENSTDLIVLKEILPFLINNLESVGRVKIKTAIIPAGLLQIPEEKVLLLK 185
Query: 156 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215
ASLR+D++ +AGF LSR+K + +G V +N K T+ GD +S+ G G+I
Sbjct: 186 DTVASLRLDSVVAAGFNLSRTKAGEYVESGKVMLNSLECDKTDKTVAEGDTLSLRGFGKI 245
Query: 216 KIGEINS-TRKGKFAVELIQYL 236
K+ EI ++KG+ ++ + +Y+
Sbjct: 246 KLQEIGGLSKKGRQSIVIKKYV 267
>gi|373494493|ref|ZP_09585096.1| hypothetical protein HMPREF0380_00734 [Eubacterium infirmum F0142]
gi|371968423|gb|EHO85882.1| hypothetical protein HMPREF0380_00734 [Eubacterium infirmum F0142]
Length = 253
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 8/238 (3%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLSVGHPEALT-- 60
AS + + +SDFL P + + DV V GGY AER + P+ ++
Sbjct: 18 ASEKYMLTYSDFLDPHEHSAASNYIRGKGRFDVDIVFFGGYEDAERV-IMFCLPDYISIN 76
Query: 61 -SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+ D++ + + G + HGD+LGS+ G G++R KIGDI++ E GA +V E+
Sbjct: 77 DASNDVLKVIRVRTKEGGKALRHGDYLGSLTGLGVSRGKIGDILVN-EDGADIIVSSEIV 135
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
++L+T+ K G +S + L L+ + K ASLR+D + S+ F LSR+K
Sbjct: 136 EFLMTNYAKAGRNYLSLSEHELSELKLPGNSRLTVKDTVASLRLDNIVSSAFGLSRAKAQ 195
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
I G V VN TK + GD + + GKG++ + EI N TRK + +E +Y+
Sbjct: 196 EAIKRGIVFVNSLEQTKTDVQIDEGDKIVLRGKGKVLVKEIGNRTRKDRIFMEFERYV 253
>gi|332686279|ref|YP_004456053.1| hypothetical protein MPTP_0778 [Melissococcus plutonius ATCC 35311]
gi|379727687|ref|YP_005319872.1| hypothetical protein MPD5_1157 [Melissococcus plutonius DAT561]
gi|332370288|dbj|BAK21244.1| hypothetical protein, contains S4-like RNA binding domain
[Melissococcus plutonius ATCC 35311]
gi|376318590|dbj|BAL62377.1| hypothetical protein MPD5_1157 [Melissococcus plutonius DAT561]
Length = 256
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 11/234 (4%)
Query: 7 SRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEALTSD 62
S+ E+ +S +LT + LE L D+ GGY AER R + S+
Sbjct: 21 SKVELYYSPYLTNFLDPRQAYILETLVHQNNDLLYKFYGGYENAERQRCMIYPSYYQPSE 80
Query: 63 PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
D ++ + IT F SHG LG+++ GI RE GDII G K Q + E+ Y
Sbjct: 81 EDFKISLVEITYPIKFATLSHGKILGTLVNMGIKREYFGDIISNGTK-WQIFIGNEIESY 139
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLV 179
+I L+++G SV ++ E P+ + I+ +SLR+D L SA + +SR
Sbjct: 140 IINQLDRIGKTSVYLSKKE--DTELIVPKDNWIQEIDTVSSLRLDNLISAVYNISRQHSK 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
LI +G V+VNW + DI+S+ G GRI++ I N T+KGK+ + L
Sbjct: 198 KLIESGKVKVNWMENGHPDFIIGLQDIISIRGYGRIQLQAIENKTKKGKYRINL 251
>gi|167758166|ref|ZP_02430293.1| hypothetical protein CLOSCI_00504 [Clostridium scindens ATCC 35704]
gi|167664063|gb|EDS08193.1| S4 domain protein [Clostridium scindens ATCC 35704]
Length = 251
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 7/240 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
++R A +R V S+FL L + + + GGY +ER +++ P+AL
Sbjct: 15 LSRIAYTREIVTFSEFLNLNELNILHTTPKDMLLSQYKTYGGYGLSER-QMAAFLPDALY 73
Query: 61 SD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
D P + +S + SH D+LG+++ GI R K+GDI+++ K F E
Sbjct: 74 YDYQYPIQIIEISPVNRKFAEELSHRDYLGAVMNLGIERCKLGDILIEDGKAILF-AKEE 132
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
LA Y++ L ++ + +V + + YEP R + K AS+R+D + S + LSRSK
Sbjct: 133 LAGYIMEHLTRIRHTTVKTSILSAFEDSYEP-RYEELKGTVASVRLDTVLSLAYPLSRSK 191
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVELIQYL 236
+ LI V VN VT NG L+ GDI+SV GRI G ++ T+KG++ V + +Y+
Sbjct: 192 ITGLIEGARVFVNGKLVTSNGYRLKEGDILSVRKMGRIGYNGILSETKKGRYMVSIRKYI 251
>gi|332708243|ref|ZP_08428225.1| uncharacterized S4-like domain protein [Moorea producens 3L]
gi|332352967|gb|EGJ32525.1| uncharacterized S4-like domain protein [Moorea producens 3L]
Length = 182
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 78/104 (75%)
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+V RI L L+ + P+ K T EAS+R+DA+ASAGF +SRSK+V+ I+ GDVRVNW
Sbjct: 79 TVKTQRIDLSELKVKEPKKKLRTTTEASMRLDAIASAGFGMSRSKMVDFITTGDVRVNWK 138
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236
V ++ T+++GD++++ GKGR+++G+++ T+K ++ VEL +Y+
Sbjct: 139 EVKQSSYTVKSGDLIAIRGKGRLEVGDVSITKKQRYRVELTRYI 182
>gi|153810900|ref|ZP_01963568.1| hypothetical protein RUMOBE_01284 [Ruminococcus obeum ATCC 29174]
gi|149833296|gb|EDM88378.1| S4 domain protein [Ruminococcus obeum ATCC 29174]
Length = 206
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 111/201 (55%), Gaps = 11/201 (5%)
Query: 41 GGYPQAERCRLSVGHPEAL----TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 96
GGY QAER ++ HP+AL + A + F + +H DFLG++L GI R
Sbjct: 10 GGYEQAER-QMVAFHPDALLFPWKYPIKCLKAEPLAAKFS-EDLTHRDFLGAVLNLGIER 67
Query: 97 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP-PRTKSFK 155
IGDI++Q + A ++ADY+I +L +V + ++ + + LE+ P P +
Sbjct: 68 AVIGDILVQ-KHTAWIFCHEKIADYIIENLTRVRHTTMKLSMVD--NLEHIPEPEFQEIN 124
Query: 156 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215
AS+R+DAL F+ SR+ +V I G V VN +T NG + GDI+SV GKGR
Sbjct: 125 GTCASVRLDALIGLAFQTSRNSMVPFIEGGQVFVNGKLITSNGYEPKDGDIISVRGKGRF 184
Query: 216 KI-GEINSTRKGKFAVELIQY 235
+ G T+KG+ +V+L++Y
Sbjct: 185 RYEGVSRQTKKGRNSVKLLRY 205
>gi|336421662|ref|ZP_08601818.1| hypothetical protein HMPREF0993_01195 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336000133|gb|EGN30286.1| hypothetical protein HMPREF0993_01195 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 251
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 7/240 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
++R A +R V S+FL L + + GGY +ER +++ P+AL
Sbjct: 15 LSRIAYTREIVTFSEFLNLNELNILHTTPKDMLLSHYKTYGGYGLSER-QMAAFLPDALY 73
Query: 61 SD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
D P + +S + SH D+LG+++ GI R K+GDI+++ K F E
Sbjct: 74 YDYQYPIQIIEISPVNRKFAEELSHRDYLGAVMNLGIERCKLGDILIEDGKAILF-AKEE 132
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
LA Y++ L ++ + +V + + YEP R + K AS+R+D + S + LSRSK
Sbjct: 133 LAGYIMEHLTRIRHTTVKTSILSAFEDSYEP-RYEELKGTVASVRLDTVLSLAYPLSRSK 191
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVELIQYL 236
+ LI V VN VT NG L+ GDI+SV GRI G ++ T+KG++ V + +Y+
Sbjct: 192 ITGLIEGARVFVNGKLVTSNGYRLKEGDILSVRKMGRIGYNGILSETKKGRYMVSIRKYI 251
>gi|302871852|ref|YP_003840488.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
obsidiansis OB47]
gi|302574711|gb|ADL42502.1| RNA-binding S4 domain protein [Caldicellulosiruptor obsidiansis
OB47]
Length = 255
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 125/234 (53%), Gaps = 6/234 (2%)
Query: 7 SRREVLHSDFLTPPVLKESM-MALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI 65
+R + +SDFL+P +K ++ L+K + GGY +ER L++ + ++
Sbjct: 22 TRFGIEYSDFLSPFAIKYAVDFLLKKENQILYKIWGGYEGSERNILALFSRDFEEYAENL 81
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ H LGS +G GI R+KIGDI+++ E A V E+A Y++T+
Sbjct: 82 TYPIETILIEAKDKLFHRQVLGSFIGNGIKRDKIGDILVK-ENSALVFVKDEVATYIVTN 140
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLI 182
++K+G V C+ + ++ + + K I ASLRVD++ S GF +SR + +LI
Sbjct: 141 IDKIGKEKVKCSIVRDNEVDIKYFFSNEGKRITYTLASLRVDSVISHGFGISREEAADLI 200
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
V VNW + K ++ GD++SV GR+KI ++ T+KG+ +E++++
Sbjct: 201 RQMKVAVNWIYIDKPSYPIKEGDLISVRHYGRLKIDKVLTQTKKGRIRIEVLRF 254
>gi|300811330|ref|ZP_07091827.1| S4 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300497694|gb|EFK32719.1| S4 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 265
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 7/221 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 70
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V V PL ++ + +S+R+DA+ +A RS++ + G+VR+N
Sbjct: 156 PVKVRLEEKPLKDRLEAEDNSEIITAVASSMRLDAVLAALSNKPRSQVKEALEAGEVRLN 215
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
W K + L+ GDI+S+ GR+K+ + ++KG+ VE
Sbjct: 216 WHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256
>gi|312135163|ref|YP_004002501.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
owensensis OL]
gi|311775214|gb|ADQ04701.1| RNA-binding S4 domain protein [Caldicellulosiruptor owensensis OL]
Length = 260
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 6/233 (2%)
Query: 8 RREVLHSDFLTPPVLKESM-MALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 66
R + +SDFL+P +K ++ L+K + GGY +ER L++ + ++
Sbjct: 28 RWGIEYSDFLSPFAIKYAVDFLLKKENQILYKIWGGYEGSERNILALFSRDFEEYAENLT 87
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
+ H LGS +G GI R+KIGDI+++ E A V E+A Y++T++
Sbjct: 88 YPIKTILIEAKDKLFHRQVLGSFIGNGIKRDKIGDILVK-ENSALVFVKDEVATYIVTNI 146
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLIS 183
+K+G V C+ + ++ + + K I ASLR D++ S GF +SR + +LI
Sbjct: 147 DKIGKEKVKCSIVRDNEVDIKYFFSNEGKRITYTVASLRADSVISHGFGISREEAADLIR 206
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
V VNW + K ++ GD++SV GR+KI ++ T+KG+ ++E++++
Sbjct: 207 QMKVAVNWIYIDKPSYPIKEGDLISVRHHGRLKIDKVLTQTKKGRISIEVLRF 259
>gi|421731791|ref|ZP_16170914.1| hypothetical protein WYY_11950 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407074004|gb|EKE46994.1| hypothetical protein WYY_11950 [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 256
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 9/221 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI--VAALS 70
+DFL P +E ++ + D +A GGY +AER R ++ +PE + + D + A
Sbjct: 35 TDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AILYPEYMEPEQDDFELRAFD 90
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F H LGS++G G+ R+K GD+I E+ Q +V E+AD++ T L K G
Sbjct: 91 VQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQLIVSAEIADFVSTQLTKAG 149
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V +I L AL + +SLR+DA+ ++ + SR K L+ NG V+VN
Sbjct: 150 KAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMSRQSRQKAQALVKNGLVKVN 209
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
W + + GD++S+ G GR + +++ T+K K+ V
Sbjct: 210 WKAIEDPSYQVAEGDMLSIRGFGRCSLAKVDGKTKKDKWKV 250
>gi|334127576|ref|ZP_08501488.1| S4 domain protein [Centipeda periodontii DSM 2778]
gi|333389530|gb|EGK60695.1| S4 domain protein [Centipeda periodontii DSM 2778]
Length = 264
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 108/199 (54%), Gaps = 3/199 (1%)
Query: 40 QGGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
GGY AER R + H + A T D +A + N F +H D LG+++G GI RE
Sbjct: 67 NGGYAGAERQRAMLRHRDFAGTPDGFGIACVEAAWNGQFARLTHRDVLGAVMGLGIEREL 126
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 158
IGDI L A+ + ++A ++I +L +G V V + + RTK +
Sbjct: 127 IGDI-LPAADTAKIICDVKIAAFIIQNLTMIGAVGVKVQLSDVTEIAPREERTKEIRATV 185
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218
ASLR+D++ +AGF +SRS+ + I+ V++NW + T+ GD++S+ G+GR+++
Sbjct: 186 ASLRLDSIVAAGFGISRSRAADDIAADKVKLNWQSTGSASKTINEGDVLSMRGRGRVEVT 245
Query: 219 EI-NSTRKGKFAVELIQYL 236
+ T+KG+ V L ++
Sbjct: 246 AVCGQTKKGRTVVVLKRFF 264
>gi|326791369|ref|YP_004309190.1| RNA-binding S4 domain-containing protein [Clostridium lentocellum
DSM 5427]
gi|326542133|gb|ADZ83992.1| RNA-binding S4 domain protein [Clostridium lentocellum DSM 5427]
Length = 259
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 127/240 (52%), Gaps = 9/240 (3%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 59
++R+ + + +DF L SM+ +E+ GG+ +AER L + E
Sbjct: 24 SKRSEQQFRPIFTDFYNKEWLL-SMIDRYIEESTKQMCYFYGGFEEAERQVLGIAPYEIQ 82
Query: 60 TSDPDIVA-ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
D I+A L + G + +H D+LG++LG GI RE IGDI+++ GA + +
Sbjct: 83 EEDFPIMALELKVKTGIG-KALTHRDYLGALLGLGIERETIGDIVIK-PFGAYIIANESM 140
Query: 119 ADYLITSLEKVGNV-SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ ++L +G ++ IP L+ PP+ KS++T ASLR+D + +AGF LSR
Sbjct: 141 VSYIYSNLLSIGKCQNIEQQVIPFSQLQINPPQIKSYETTVASLRLDVIVAAGFGLSRGV 200
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
LI V+ N T T N ++ GD ++V G G+IK+ +I+ T+K + + + +Y+
Sbjct: 201 CTKLIQADRVKCNGVTST-NKQLIKEGDHITVRGYGKIKLKQISGLTKKDRIHITIEKYV 259
>gi|317129283|ref|YP_004095565.1| RNA-binding S4 domain-containing protein [Bacillus cellulosilyticus
DSM 2522]
gi|315474231|gb|ADU30834.1| RNA-binding S4 domain protein [Bacillus cellulosilyticus DSM 2522]
Length = 257
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 15/223 (6%)
Query: 14 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAAL 69
+DFL P + +S++ + +V GGY +AER C + + E +T D DI A
Sbjct: 34 TDFLDPRQQYIVQSLVG--QNDEVAVSFYGGYKEAERKRCLIYPHYVEPVTEDYDI-ALY 90
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ F H + LG+++ G+ REK GDI+ E+ Q ++ E+A+++ +L+ V
Sbjct: 91 ELLYPTKFVQIEHREILGALMNVGLKREKFGDILNSAER-FQIVLAKEVAEFVSWNLKSV 149
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGD 186
G VS +P+ E TK + + +SLR+D + + +KLSRSK+ +I NG
Sbjct: 150 GKARVSLQVVPI---EESISVTKEYSYLHITASSLRLDTIVAEVYKLSRSKVKPMIENGY 206
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKF 228
++VNW + +L+ D++SV GKGR +I T+K KF
Sbjct: 207 IKVNWKVIEDPSFSLQIKDVLSVRGKGRCEIVSNEGQTKKNKF 249
>gi|366053398|ref|ZP_09451120.1| RNA-binding S4 domain-containing protein [Lactobacillus suebicus
KCTC 3549]
Length = 261
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 9/225 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI----VAAL 69
+ F+ P + + + DV ++ GG+ AE RL + +P P+I + L
Sbjct: 36 THFMNPRQRYIAQTLVNRQDDVSILSNGGFSNAEMQRLLI-YPTYYQ--PEIEDFQIQVL 92
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ F H LG+++ GI RE GDII G K Q +V L+DY+ ++K+
Sbjct: 93 DVKYPEKFAEIKHRQILGTLVSQGIERETFGDIITDGHKW-QVMVEANLSDYIRVQVDKI 151
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
N+ V I L + + + +T +SLR+DA+ ++ F SR++ LI +G VR+
Sbjct: 152 ANIRVQLIPISLDDVISQISDAEEIQTTVSSLRLDAIIASSFNYSRNRSKELIEHGKVRL 211
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELI 233
NW + K + D++SV GRIK+ ++ N T+K K V L+
Sbjct: 212 NWEDIDKPDYPVAIHDLISVRHGGRIKLTDVGNPTKKNKLHVSLL 256
>gi|253577876|ref|ZP_04855148.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850194|gb|EES78152.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 250
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 129/243 (53%), Gaps = 13/243 (5%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMA---LEKLADVKAVAQGGYPQAERCRLSVGHPE 57
+A + R V SDFL L E + + + GGY AER ++ HP+
Sbjct: 14 LANLSWQRDIVTFSDFLN---LNEQNIVSSLKHQFPQIVMETSGGYENAER-QMVAFHPD 69
Query: 58 ALTSDPDI-VAALSITGN-FGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 114
AL + + L I F + SH D+LG++L G+ R IGDI++Q +K A F
Sbjct: 70 ALAFTWEYPIDCLRIEPKALKFSEELSHRDYLGALLNLGVDRSVIGDIVVQ-KKAAWFFC 128
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 174
++ ++ + +L +V + ++ T++ + E+ P +S AS+R+D+L S FK S
Sbjct: 129 QNKMTEFFLENLCRVRHTNILITKVED-SDEFPRPVLESVSGTCASVRLDSLISLAFKTS 187
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGKFAVELI 233
RS +V+ I G V VN +T NG + GDI+SV GKGR I G + T+KG+ +V ++
Sbjct: 188 RSSMVSYIEGGQVFVNGKLITSNGYEPKDGDIISVRGKGRFIFDGVSHQTKKGRCSVRIM 247
Query: 234 QYL 236
+Y+
Sbjct: 248 RYV 250
>gi|418035959|ref|ZP_12674397.1| hypothetical protein LDBUL1519_01097 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354689118|gb|EHE89130.1| hypothetical protein LDBUL1519_01097 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 265
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 7/221 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 70
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F H LGS+ +G+ + GDII G+ QF ELA + + ++++G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQGRWQFFAEKELAGFFASQIDRMG 155
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V V L ++ + +S+R+DA+ +A SRS++ + G+VR+N
Sbjct: 156 PVKVRLEEKALKDRLEAEDNSEIISAVASSMRLDAVLAALSNKSRSQVKEALEAGEVRLN 215
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
W K + L+ GDI+S+ GR+K+ + ++KG+ VE
Sbjct: 216 WHEEEKGESLLKVGDILSLRRFGRVKLLSVQPSKKGRLRVE 256
>gi|154685957|ref|YP_001421118.1| hypothetical protein RBAM_015240 [Bacillus amyloliquefaciens FZB42]
gi|384265122|ref|YP_005420829.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387898117|ref|YP_006328413.1| hypothetical protein MUS_1688 [Bacillus amyloliquefaciens Y2]
gi|394993877|ref|ZP_10386616.1| YlmH [Bacillus sp. 916]
gi|429505092|ref|YP_007186276.1| hypothetical protein B938_07910 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|154351808|gb|ABS73887.1| YlmH [Bacillus amyloliquefaciens FZB42]
gi|380498475|emb|CCG49513.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387172227|gb|AFJ61688.1| conserved hypothetical protein YlmH [Bacillus amyloliquefaciens Y2]
gi|393805201|gb|EJD66581.1| YlmH [Bacillus sp. 916]
gi|429486682|gb|AFZ90606.1| hypothetical protein B938_07910 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 256
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 9/221 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI--VAALS 70
+DFL P +E ++ + D +A GGY +AER R ++ +PE + + D + A
Sbjct: 35 TDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AILYPEYMEPEQDDFELRAFD 90
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F H LGS++G G+ R+K GD+I E+ Q +V E+AD++ T L K G
Sbjct: 91 VQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQLIVSGEIADFVSTQLTKAG 149
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V +I L AL + +SLR+DA+ ++ + SR K L+ NG V+VN
Sbjct: 150 KAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMSRQSRQKAQALVKNGLVKVN 209
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
W + + GD++S+ G GR + +++ T+K K+ V
Sbjct: 210 WKAIEDPSYQVAEGDMLSIRGFGRCSLAKVDGKTKKDKWKV 250
>gi|451347090|ref|YP_007445721.1| hypothetical protein KSO_011745 [Bacillus amyloliquefaciens IT-45]
gi|452855488|ref|YP_007497171.1| factor involved in shape determination,RNA-binding fold [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|449850848|gb|AGF27840.1| hypothetical protein KSO_011745 [Bacillus amyloliquefaciens IT-45]
gi|452079748|emb|CCP21505.1| factor involved in shape determination,RNA-binding fold [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 256
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 9/221 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI--VAALS 70
+DFL P +E ++ + D +A GGY +AER R ++ +PE + + D + A
Sbjct: 35 TDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AILYPEYMEPEQDDFELRAFD 90
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F H LGS++G G+ R+K GD+I E+ Q +V E+AD++ T L K G
Sbjct: 91 VQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQLIVSGEIADFVSTQLTKAG 149
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V +I L AL + +SLR+DA+ ++ + SR K L+ NG V+VN
Sbjct: 150 KAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMSRQSRQKAQALVKNGLVKVN 209
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
W + + GD++S+ G GR + +++ T+K K+ V
Sbjct: 210 WKAIEDPSYQVAEGDMLSIRGFGRCSLAKVDGKTKKDKWKV 250
>gi|385264665|ref|ZP_10042752.1| S4 domain-containing protein [Bacillus sp. 5B6]
gi|385149161|gb|EIF13098.1| S4 domain-containing protein [Bacillus sp. 5B6]
Length = 256
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 9/221 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI--VAALS 70
+DFL P +E ++ + D +A GGY +AER R ++ +PE + + D + A
Sbjct: 35 TDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AILYPEYMEPEQDDFELRAFD 90
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F H LGS++G G+ R+K GD+I E+ Q +V E+AD++ T L K G
Sbjct: 91 VQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQLIVSGEIADFVRTQLTKAG 149
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V +I L AL + +SLR+DA+ ++ + SR K L+ NG V+VN
Sbjct: 150 KAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMSRQSRQKAQALVKNGLVKVN 209
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
W + + GD++S+ G GR + +++ T+K K+ V
Sbjct: 210 WKAIEDPSYQVAEGDMLSIRGFGRCSLAKVDGKTKKDKWKV 250
>gi|375362185|ref|YP_005130224.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|371568179|emb|CCF05029.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
Length = 256
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 9/221 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI--VAALS 70
+DFL P +E ++ + D +A GGY +AER R ++ +PE + + D + A
Sbjct: 35 TDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AILYPEYMEPEQDDFELRAFD 90
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F H LGS++G G+ R+K GD+I E+ Q +V E+AD++ T L K G
Sbjct: 91 VQYAEKFVSIDHRSLLGSLMGVGLKRQKYGDLIF-SEEAVQLIVSGEIADFVSTQLTKAG 149
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V +I L AL + +SLR+DA+ ++ + SR K L+ NG V+VN
Sbjct: 150 KAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMSRQSRQKAQALVKNGLVKVN 209
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
W + + GD++S+ G GR + +++ T+K K+ V
Sbjct: 210 WKAIEDPSFQVAEGDMLSIRGFGRCSLAKVDGKTKKDKWKV 250
>gi|415886495|ref|ZP_11548275.1| RNA-binding S4 domain protein [Bacillus methanolicus MGA3]
gi|387587182|gb|EIJ79505.1| RNA-binding S4 domain protein [Bacillus methanolicus MGA3]
Length = 257
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 77 FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSC 136
F H LGS++ G+ R K GDI+++G+K QF E+ADY+ L+ +G SV+
Sbjct: 98 FITIEHRQVLGSLMSLGLKRGKFGDILIEGDK-VQFFAGKEIADYVSLQLDSIGKASVTI 156
Query: 137 TRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVT 195
IPL A++ T+ T+ +SLR+DA+ SA + LSR K NLI NG V+VNWT V
Sbjct: 157 NEIPLENAIQITESWTEETSTV-SSLRLDAVISALYNLSRQKSQNLIQNGLVKVNWTLVE 215
Query: 196 KNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 228
GD++SV G GR KI I T+K K+
Sbjct: 216 NKSFECGEGDVISVRGYGRSKIFSIEGKTKKDKW 249
>gi|157413918|ref|YP_001484784.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9215]
gi|157388493|gb|ABV51198.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9215]
Length = 263
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 124/241 (51%), Gaps = 8/241 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A A E + F + V +E + E L D K GG+ ++R +++ + +
Sbjct: 23 IANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIHGGFSSSQRSKIACFRGDNI- 81
Query: 61 SDPDIV------AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 114
+ D++ + GNF F + DF ++ G+ + K+GDI G++GAQ ++
Sbjct: 82 PEEDVLKNNFPAQGIKFYGNFLFDNATQDDFRSLLIENGVNKVKVGDIWTIGDRGAQGII 141
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEASLRVDALASAGFKL 173
++L + + +V V + + L RTK T+EAS R+DA+ASAGF++
Sbjct: 142 DNLDIEHLDEKIFYLRDVEVKINLVGIDELLIPAGRTKKLVNTVEASTRLDAIASAGFRI 201
Query: 174 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELI 233
SR K++ I NG +++N + V K L+ GD + + KG I+I + T++ ++ V+L+
Sbjct: 202 SRKKIIERIENGMLKLNGSKVNKPTINLKIGDKLELENKGFIEIINLEITKRERWKVKLL 261
Query: 234 Q 234
+
Sbjct: 262 R 262
>gi|313888339|ref|ZP_07822010.1| S4 domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845742|gb|EFR33132.1| S4 domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 260
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 23/227 (10%)
Query: 14 SDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALS 70
+DFL P + S+ L + D + GGY +E + + +P + D D+V
Sbjct: 41 TDFLNPREINLSISILNRFKDNISYKVDGGYEDSESSIIYI-YPSYMYENEDDDLVLFKF 99
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
T N HGD LGSILG I R KIGDI++ GEK F V E+A+++ +L KV
Sbjct: 100 DTNN----KIKHGDILGSILGLSIDRGKIGDILI-GEKYTYFFVKREIANFVEINLTKVS 154
Query: 131 NVSVSCTR------IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
++ +R +P +Y+ K I +S R+D L + F LSRSK+ +I +
Sbjct: 155 RYNILLSREDDTSGLPKKEYDYK-------KIIVSSFRLDNLIAKVFNLSRSKVKEMIKS 207
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
V+VN+ T++ L GD+VS+ GR +I I +T+KG F +
Sbjct: 208 ELVKVNFAKETRSHLELELGDLVSLRHYGRFRIFNIEGNTKKGNFVL 254
>gi|257870264|ref|ZP_05649917.1| S4 domain-containing protein [Enterococcus gallinarum EG2]
gi|357050529|ref|ZP_09111727.1| hypothetical protein HMPREF9478_01710 [Enterococcus saccharolyticus
30_1]
gi|257804428|gb|EEV33250.1| S4 domain-containing protein [Enterococcus gallinarum EG2]
gi|355381182|gb|EHG28309.1| hypothetical protein HMPREF9478_01710 [Enterococcus saccharolyticus
30_1]
Length = 260
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 8/216 (3%)
Query: 14 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAAL 69
+DFL P + ES+ + + D+ GGY AER C + + + + + D+V
Sbjct: 36 TDFLDPRQAYILESL--IRQSTDLSFQFFGGYEAAERRRCLIYPDYYQPASEEFDLVL-F 92
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+I F SHG LG+++GTG+ RE GDII GE Q V E++ ++ T ++K+
Sbjct: 93 TIIYPKKFTVLSHGKVLGTLMGTGVKREYFGDIISDGE-NWQVFVASEISHFVQTQVDKI 151
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
GNVSV L + +SLR+D + SA + +SR + LI +G V+V
Sbjct: 152 GNVSVRLEETKYTELIVPKDGWSEERETVSSLRLDTVISAVYNISRQRSKQLIESGKVKV 211
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
NWT + L DIVS+ G GRI+I + T K
Sbjct: 212 NWTETLRPDFMLDLLDIVSIRGFGRIQIQGLEGTTK 247
>gi|47570312|ref|ZP_00240959.1| S4 domain protein [Bacillus cereus G9241]
gi|47553021|gb|EAL11425.1| S4 domain protein [Bacillus cereus G9241]
Length = 255
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 119/232 (51%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKR-ALIYPDYLVVN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW TV + TGD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PLIKNGLVKVNWKTVEQTSYECYTGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|225567966|ref|ZP_03776991.1| hypothetical protein CLOHYLEM_04039 [Clostridium hylemonae DSM
15053]
gi|225163254|gb|EEG75873.1| hypothetical protein CLOHYLEM_04039 [Clostridium hylemonae DSM
15053]
Length = 251
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 118/237 (49%), Gaps = 9/237 (3%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL----T 60
A +R V SDFL L + + GGY +ER ++ P+AL T
Sbjct: 19 AFTRGIVTFSDFLNLNELNILHTTPKHMFPAHYETYGGYDLSERQMVAF-LPDALYYEYT 77
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
++ ++ F + +H D+LG+++ GI R K+GDII G GA V ELA
Sbjct: 78 YPLSVIEVAPVSRKFA-EELTHRDYLGALMNLGIERSKLGDII-AGSFGAFLFVKEELAA 135
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ L ++ + +V + P YEP + + K S+R+D + S + LSRSKL
Sbjct: 136 YITGELTRIRHTAVQAVQRPAAEFTYEP-KYEEMKGTVPSVRLDTVLSVAWPLSRSKLTA 194
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVELIQYL 236
I G V VN +T NG L+ D +SV G GR+ G ++ T+KG++ + + +Y+
Sbjct: 195 YIEGGKVFVNGKLITSNGYHLKESDRISVRGMGRLTYEGILSQTKKGRYMISVHKYI 251
>gi|377831350|ref|ZP_09814327.1| S4 domain protein [Lactobacillus mucosae LM1]
gi|377554777|gb|EHT16479.1| S4 domain protein [Lactobacillus mucosae LM1]
Length = 262
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 6/231 (2%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSD 62
A R +L +DFL P + + + DVK A GG+ AE R + E +D
Sbjct: 30 ADQYRPIL-TDFLNPRQVYIAQTLTNRRDDVKMRANGGWEHAEMQRVLFYPSYYEPQQTD 88
Query: 63 PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 122
++ + I F H LG+++GTG+ R GD++ +G + Q +V L DYL
Sbjct: 89 FEL-QLIEIDYPTKFTELHHRQILGTLIGTGLVRSSFGDVLNEGMRW-QVVVSRSLTDYL 146
Query: 123 ITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 182
+ ++G + V + + ++ +S+R+DA+ +AGF SR++ LI
Sbjct: 147 RQQVGQIGKIHVKMKPVEPEMIVTPQEDWETMTDTVSSMRLDAVIAAGFNYSRNRAKQLI 206
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
+GD RVNW T + L D++SV GRI+I EI +TRK K V +
Sbjct: 207 EHGDARVNWETEMRPDYPLVAHDLLSVRHAGRIRIDEIQGTTRKNKIRVAM 257
>gi|375089438|ref|ZP_09735764.1| hypothetical protein HMPREF9708_00154 [Facklamia languida CCUG
37842]
gi|374566836|gb|EHR38070.1| hypothetical protein HMPREF9708_00154 [Facklamia languida CCUG
37842]
Length = 260
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 9/234 (3%)
Query: 4 RASSRREVLHSDFLTPP---VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+ASS + + FLTP ++K+ + E D++ GGYP AER R +
Sbjct: 26 QASSLYSPVLTPFLTPREGLIVKQIVNGYE---DLQVELTGGYPSAERQRALIYPLYYQV 82
Query: 61 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
D +A + I F +H LGS++ TGI R+++GDI+ G+ Q +V LA
Sbjct: 83 QLEDFSLAYMQIHYPHKFGELTHQQILGSVMATGIKRDRLGDIMTDGQT-WQIIVDTHLA 141
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
YLI L K+G + V +I L + I SLRVD++ S + LSR +
Sbjct: 142 TYLINHLSKIGRMGVQVKQINPEELVDSVEEWEDLPLITGSLRVDSVVSKVYNLSRQRAK 201
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
I +G V+VN+T + K T L D+VS+ GR ++ I TRK K+ + +
Sbjct: 202 EAIQSGQVKVNYTPIDKVDTVLAMSDLVSLRKYGRFRLEGIEGMTRKDKYRINV 255
>gi|159903952|ref|YP_001551296.1| hypothetical protein P9211_14111 [Prochlorococcus marinus str. MIT
9211]
gi|159889128|gb|ABX09342.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
9211]
Length = 262
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 4/236 (1%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL---SVGHPE 57
+ +A + L S F+ +++E + + + ++ A GGY AER R+ E
Sbjct: 24 LGEKAHKTWQELWSPFVEAQLIEEILKIFDPIHEINCHADGGYLGAERKRILFRRTHEGE 83
Query: 58 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
++ + I GNF F DF ++ GI+ +GDI + G++GAQ + E
Sbjct: 84 KKIFPKPTLSGMQIEGNFLFDKTRIQDFKEALEEKGISPSDLGDIWIVGDRGAQLICTRE 143
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-KSFKTIEASLRVDALASAGFKLSRS 176
L + VS+ + + L R K TIEAS R+D+++SAGF LSR+
Sbjct: 144 AGLLLNKQNGLIREVSIKYELLDINQLRLPSKRMPKKITTIEASTRLDSISSAGFGLSRA 203
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
K+V I G +R+NWT + +++GD + + GKG + I I T++ ++ V L
Sbjct: 204 KIVTEIKAGRIRLNWTRANQPFKDVKSGDRIHLEGKGSLLIQNIEPTKRARWRVVL 259
>gi|429737653|ref|ZP_19271509.1| S4 domain protein [Selenomonas sp. oral taxon 138 str. F0429]
gi|429152016|gb|EKX94853.1| S4 domain protein [Selenomonas sp. oral taxon 138 str. F0429]
Length = 264
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 3/198 (1%)
Query: 41 GGYPQAERCRLSVGHPEAL-TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GGY AER R + H + T D ++ + N F +H D LG+++G GI RE I
Sbjct: 68 GGYAGAERQRAMLRHRDFRGTPDGFGISCVESVWNGQFARLTHRDVLGALMGLGIERELI 127
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDI L A+ + ++A +++ +L +G V L + RTK + A
Sbjct: 128 GDI-LPAPDTAKIICDTKIAGFIVNNLTMIGAVGAKAALSNLEEIAPREERTKEIRATVA 186
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+D++ +AGF +SRS+ + I+ V++NW + T++ GD++S+ G+GR+++ E
Sbjct: 187 SLRLDSIVAAGFGISRSRAADDIAADKVKLNWQSAGSASKTIKEGDVLSMRGRGRLEVTE 246
Query: 220 IN-STRKGKFAVELIQYL 236
+ T+KG+ V L ++
Sbjct: 247 VRGQTKKGRTVVVLNRFF 264
>gi|431185990|ref|ZP_19500053.1| S4 domain-containing protein [Enterococcus faecium E1620]
gi|430572975|gb|ELB11810.1| S4 domain-containing protein [Enterococcus faecium E1620]
Length = 260
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 19/227 (8%)
Query: 14 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 67
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVKEDFE-TA 90
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ T +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVATQVT 149
Query: 128 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEA 206
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
G V+VNWT T+ L DI+SV G GR++I E+ T+K K+ V
Sbjct: 207 GKVKVNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253
>gi|308173503|ref|YP_003920208.1| shape determination protein [Bacillus amyloliquefaciens DSM 7]
gi|384159478|ref|YP_005541551.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus amyloliquefaciens TA208]
gi|384164087|ref|YP_005545466.1| hypothetical protein LL3_01698 [Bacillus amyloliquefaciens LL3]
gi|384168525|ref|YP_005549903.1| hypothetical protein BAXH7_01923 [Bacillus amyloliquefaciens XH7]
gi|307606367|emb|CBI42738.1| factor involved in shape determination, RNA-binding fold [Bacillus
amyloliquefaciens DSM 7]
gi|328553566|gb|AEB24058.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus amyloliquefaciens TA208]
gi|328911642|gb|AEB63238.1| factor involved in shape determination, RNA-binding fold [Bacillus
amyloliquefaciens LL3]
gi|341827804|gb|AEK89055.1| hypothetical protein BAXH7_01923 [Bacillus amyloliquefaciens XH7]
Length = 256
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 9/221 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI--VAALS 70
+DFL P +E ++ + D +A GGY +AER R ++ +PE + + D + A
Sbjct: 35 TDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AILYPEYMEPEQDDFELRAFE 90
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F H LGS++G G+ R+K GD+I E+ Q +V E+AD++ T L K G
Sbjct: 91 VQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIF-SEEAVQLIVSGEIADFVGTQLTKAG 149
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V +I L AL + + +SLR+DA+ + + SR K L+ NG V+VN
Sbjct: 150 KAPVKLEKIELSALHIPASDVEIREDTVSSLRLDAVCALMSRQSRQKAQALVKNGLVKVN 209
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
W V + GD++S+ G GR + +++ T+K K+ V
Sbjct: 210 WKAVEDPSYQVAEGDMLSIRGFGRCSLTKVDGKTKKDKWKV 250
>gi|261206526|ref|ZP_05921226.1| RNA binding protein S4 [Enterococcus faecium TC 6]
gi|289565436|ref|ZP_06445885.1| RNA-binding S4 domain-containing protein [Enterococcus faecium
D344SRF]
gi|294614703|ref|ZP_06694605.1| S4 domain protein [Enterococcus faecium E1636]
gi|294618999|ref|ZP_06698494.1| S4 domain protein [Enterococcus faecium E1679]
gi|430851041|ref|ZP_19468797.1| S4 domain-containing protein [Enterococcus faecium E1185]
gi|431677802|ref|ZP_19524400.1| S4 domain-containing protein [Enterococcus faecium E1904]
gi|260079236|gb|EEW66927.1| RNA binding protein S4 [Enterococcus faecium TC 6]
gi|289162765|gb|EFD10616.1| RNA-binding S4 domain-containing protein [Enterococcus faecium
D344SRF]
gi|291592441|gb|EFF24048.1| S4 domain protein [Enterococcus faecium E1636]
gi|291594660|gb|EFF26042.1| S4 domain protein [Enterococcus faecium E1679]
gi|430534798|gb|ELA75233.1| S4 domain-containing protein [Enterococcus faecium E1185]
gi|430599295|gb|ELB37006.1| S4 domain-containing protein [Enterococcus faecium E1904]
Length = 260
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 19/227 (8%)
Query: 14 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 67
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ T +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVATQVT 149
Query: 128 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEA 206
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
G V+VNWT T+ L DI+SV G GR++I E+ T+K K+ V
Sbjct: 207 GKVKVNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253
>gi|289423170|ref|ZP_06424985.1| RNA-binding S4 domain protein [Peptostreptococcus anaerobius 653-L]
gi|289156501|gb|EFD05151.1| RNA-binding S4 domain protein [Peptostreptococcus anaerobius 653-L]
Length = 260
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 110/218 (50%), Gaps = 8/218 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
++FL P +K ++ L D+K +GGY A R + + S+ + ++G
Sbjct: 38 TEFLNPYEVKNAVAILNTEPDLKYKLEGGYDGAIRSVMLISQYYCDLSEESSIRCFQVSG 97
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
NF F+ SH D+LGSILG GI REK+GDI++ E Q +V ++ DY++ +LEKV
Sbjct: 98 NFKFKSVSHRDYLGSILGLGIKREKLGDILVH-EDYCQIIVSSDMGDYVLYNLEKVARNR 156
Query: 134 VSCTRIPLLALEYEPPRTKSF--KTIE-ASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V+ I + + P F K I ASLR+D + + F LSR + I V V+
Sbjct: 157 VTVKEIGICDI---IPVEDEFDIKNISVASLRLDGIIAGVFNLSRQEASKFIGAEYVSVD 213
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 227
+ + + ++SV G+ + EI ++KGK
Sbjct: 214 YEKIDNPSKQVEEKSVISVRKCGKFVLDEIGGVSKKGK 251
>gi|387927110|ref|ZP_10129789.1| RNA-binding S4 domain protein [Bacillus methanolicus PB1]
gi|387589254|gb|EIJ81574.1| RNA-binding S4 domain protein [Bacillus methanolicus PB1]
Length = 257
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 112/219 (51%), Gaps = 7/219 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
+DFL P + + + ++ GG AER R +V P+ +D +
Sbjct: 34 TDFLDPREQQILKAVVGQSEEIHCHLFGGTGGAERKR-AVICPDYYQADREDFEICLFEI 92
Query: 74 NF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
N+ F H LGS++ G+ R K GDI+++G+ QF E+ADY+ L+ +G
Sbjct: 93 NYPKKFITIEHRQVLGSLMSLGLKRGKFGDILIEGD-NVQFFAAKEIADYVSLQLDSIGK 151
Query: 132 VSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
SV+ IPL A++ + + T+ +SLR+DA+ SA + LSR K +LI G VRVN
Sbjct: 152 ASVTICEIPLENAIQIKESWIEETSTV-SSLRLDAVISALYNLSRHKSQDLIKQGLVRVN 210
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 228
W + N GD++S+ G GR KI I T+K K+
Sbjct: 211 WALIENNSFECGEGDVISIRGYGRSKILSIEGKTKKDKW 249
>gi|425056577|ref|ZP_18460028.1| S4 domain protein [Enterococcus faecium 505]
gi|403031607|gb|EJY43207.1| S4 domain protein [Enterococcus faecium 505]
Length = 260
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 19/227 (8%)
Query: 14 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 67
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ T +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVATQVT 149
Query: 128 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMILPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEA 206
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
G V+VNWT T+ L DI+SV G GR++I E+ T+K K+ V
Sbjct: 207 GKVKVNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253
>gi|406669221|ref|ZP_11076501.1| hypothetical protein HMPREF9707_00404 [Facklamia ignava CCUG 37419]
gi|405584018|gb|EKB57944.1| hypothetical protein HMPREF9707_00404 [Facklamia ignava CCUG 37419]
Length = 260
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 16/222 (7%)
Query: 11 VLHSDFLTPPVLKESMMA---LEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI- 65
+LH FLTP +E M+A +E+ D K GG ER R + +P+ +D D
Sbjct: 35 LLH--FLTP---REQMIAQQIVEEYGDFKIAFYGGIHATERRR-GLIYPDYYQPTDVDYG 88
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ L + F SHG LG+++ G+ R +IGDII GE+ Q +V E++ YLI S
Sbjct: 89 LTLLQLHYPVKFADISHGKILGTLMSQGVDRNRIGDIISDGEQW-QVVVEHEISTYLIHS 147
Query: 126 LEKVGNVSVSCTRIP--LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 183
++K+ NV V +P L+ + E T+S + +S+R+D L S + SR + +LI
Sbjct: 148 IDKISNVGVRLEEMPAELMLISQEEWETESI--VVSSMRLDTLISNVYNFSRQRAKDLIQ 205
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
G+++VN+T + + DI+SV GR I IN K
Sbjct: 206 QGNIKVNFTLTERPDIEVSEQDIISVRKFGRFWIESINGRTK 247
>gi|347525731|ref|YP_004832479.1| RNA binding protein [Lactobacillus ruminis ATCC 27782]
gi|345284690|gb|AEN78543.1| RNA binding protein [Lactobacillus ruminis ATCC 27782]
Length = 261
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 5/228 (2%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SD 62
RA + + FL P + + + + DVK GG+ +ER R+ + +PE D
Sbjct: 25 RAKDEYRPILTHFLNPRQHFIADVLIGRFDDVKLKTFGGFLGSERKRI-LFYPEYYEPQD 83
Query: 63 PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
D ++ L I F H LG++ G+ R+ IGDII G K QF E+ Y
Sbjct: 84 NDFSMSLLEINYPVKFAKLEHRTILGTLANCGLERDVIGDIITDGTKW-QFFCEKEIEPY 142
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
L+ +++KVG V V IPL I +SLR D L S+ + LSR + +L
Sbjct: 143 LLENIDKVGKVKVKLGEIPLQNAVSPIEEWDHATVILSSLRCDVLISSVYNLSRKHVKDL 202
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 228
+ V +NW +K +R D++SV G GR+++ E+ ++KGKF
Sbjct: 203 LQTNKVSLNWMIFSKADFEIRVHDVLSVRGYGRVRMDELTGVSKKGKF 250
>gi|258508284|ref|YP_003171035.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
GG]
gi|385827956|ref|YP_005865728.1| cell division protein [Lactobacillus rhamnosus GG]
gi|257148211|emb|CAR87184.1| RNA-binding S4 domain protein [Lactobacillus rhamnosus GG]
gi|259649601|dbj|BAI41763.1| cell division protein [Lactobacillus rhamnosus GG]
Length = 259
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 102/200 (51%), Gaps = 5/200 (2%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILG 91
D+K V GGYP AER RL P+ + P D + L + F H G++L
Sbjct: 55 DMKLVHFGGYPHAERQRLIFA-PDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLN 113
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
G+ R+ GDI+ G + QF V + D++++++ K+G V V T PL A
Sbjct: 114 AGLDRDVFGDIVTDG-RTWQFFVAAHMEDWVMSNITKIGRVGVHFTDYPLAAAVTPENDW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
+S ++LR+DA+ + GF +SR + LI G VR+N+ + T DI+SV G
Sbjct: 173 ESISFSVSALRLDAIVAHGFNMSRQRAKMLIQAGKVRLNFGENDAPDAEVATSDIISVRG 232
Query: 212 KGRIKIGEI-NSTRKGKFAV 230
GR+++ I ++KGK V
Sbjct: 233 FGRLRLDAILGESKKGKLRV 252
>gi|347750593|ref|YP_004858158.1| RNA-binding S4 domain-containing protein [Bacillus coagulans 36D1]
gi|347583111|gb|AEO99377.1| RNA-binding S4 domain protein [Bacillus coagulans 36D1]
Length = 258
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 5/218 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--IVAALSI 71
+DFL P + + + V A GGY ++ER R+ + P+ + D D +A +
Sbjct: 35 TDFLDPRMQRIVNTVIGNHGAVSVRAFGGYRESERKRMLL-FPDYFSPDEDDFHLALFEV 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H LGS++ G+ REK GDI++ GE QF V EL+D++ ++G
Sbjct: 94 HYPAKFVSFEHKHVLGSLMALGLKREKFGDILI-GEGRIQFFVAAELSDFIQMEFRQIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+ T++ L + R + +SLR+DA+ SA + +SR K LI +G V+VNW
Sbjct: 153 TPVTLTKMQLGEAIGQQQRWLEKQATVSSLRLDAILSAVYNISRQKTRALIEHGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 228
TV GD S G GR ++ + T+K K+
Sbjct: 213 KTVEDPAFQCEEGDTFSARGYGRSRLIRVEGKTKKEKW 250
>gi|81428368|ref|YP_395368.1| hypothetical protein LSA0754 [Lactobacillus sakei subsp. sakei 23K]
gi|78610010|emb|CAI55058.1| Hypothetical protein LCA_0754 [Lactobacillus sakei subsp. sakei
23K]
Length = 262
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 17/238 (7%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 63
+A++ + +DFL P + + ++K GGY AER R + +
Sbjct: 28 QATTEYRAILTDFLDPRQAYILQTLIGEKGELKYHFSGGYNAAERQRALIAPTYFEPEEA 87
Query: 64 DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 122
D + I F SHG LG+++ GI R GDI+ G++ QF V ++ADY+
Sbjct: 88 DFEIQLFEIRYPIKFAQLSHGKILGTLVNAGIDRNVFGDIMTDGQRW-QFFVTTKMADYV 146
Query: 123 ITSLEKVGNVSVSCTR-------IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 175
++ + K+G V+V IP A ++E + + +S R+D + +A + +SR
Sbjct: 147 VSQITKIGKVTVHLEEQAYTELIIPKDAWQFE-------QLLVSSFRLDTIIAAVYNMSR 199
Query: 176 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
+ L+ V++NW K L DI+SV G GRI++ I+ TRK K+ V L
Sbjct: 200 QRAKELVQGNKVKLNWQAFDKPDFELDLLDIISVRGYGRIQLKSIDGQTRKEKYRVTL 257
>gi|395239332|ref|ZP_10417212.1| S4 domain protein [Lactobacillus gigeriorum CRBIP 24.85]
gi|394476427|emb|CCI87189.1| S4 domain protein [Lactobacillus gigeriorum CRBIP 24.85]
Length = 265
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 13/230 (5%)
Query: 12 LHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VA 67
L +DFL P +L+E ++ E D GGYP AE+ R+ + ++ D +
Sbjct: 36 LLTDFLDPGQIHILRE-IIGNEFFID----DFGGYPDAEKRRVYISERDSEIKPEDFQIT 90
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
A + F H D LGS+ +GI GDII QF EL + + ++
Sbjct: 91 AFEVEYANKFIQLRHSDILGSLANSGIELGTFGDIIHDESGRWQFFAKTELRPFFLEQID 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLISNG 185
++G V + E P S + E +SLR+D++ + +LSR+K+ ++I G
Sbjct: 151 RIGRNKVRIREVA--GKEIIIPEDTSIEKDEIVSSLRLDSILAGISRLSRTKIKDVIEQG 208
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
DV++NW + ++ DI+S+ GRIK+ EI +TRKGKF V L +
Sbjct: 209 DVKLNWLETRNSNIIIKVDDIISLRHFGRIKVVEITTTRKGKFKVVLKHW 258
>gi|418004991|ref|ZP_12644992.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UW1]
gi|410548119|gb|EKQ22335.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UW1]
Length = 259
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 119/230 (51%), Gaps = 16/230 (6%)
Query: 9 REVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRL--SVGHPEALTSDP 63
R VL +DF P ++ ++A+ ++ D+K V GGYP AER R+ + + A +D
Sbjct: 31 RPVL-TDFTDP---RQRLIAISLVSADDDIKLVHFGGYPHAERQRIIFAPSYFSATAADF 86
Query: 64 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 123
DI L I F H G++L G+ R+ GDII G+ QF V + D++
Sbjct: 87 DI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW-QFFVAAHMQDWVT 144
Query: 124 TSLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALASAGFKLSRSKLVNL 181
++++K+G V V T PL +Y P + ++LR+D + + GF +SR + L
Sbjct: 145 SNVDKIGRVGVHFTEHPLT--DYVTPENDWEPLNFSVSALRLDTVVAHGFNISRQRAKTL 202
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
I G VR+N+ + T DI+SV G GR+++ EI ++KGK V
Sbjct: 203 IQGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGKLRV 252
>gi|399923764|ref|ZP_10781122.1| RNA-binding cell division protein [Peptoniphilus rhinitidis 1-13]
Length = 260
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 11/223 (4%)
Query: 14 SDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSIT 72
++FL P + S+ L + D + GGY +E + + D D + AL
Sbjct: 41 TNFLNPHEINLSISILNRFKDKISYEIDGGYEDSEASLIYIYPSYKYERDIDDIVALKFK 100
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
N + H D LG++L I R KIGDI++ G+K F V E+A+++ +L K+
Sbjct: 101 SN---EKIKHSDVLGALLALSIDRRKIGDILI-GKKFTYFFVKREVANFVEINLTKISKY 156
Query: 133 SVSCTRIPLLALEYE-PPRTKSFKTIEAS-LRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+++ +R A Y+ P R +K I AS R+D L S F LSR K +I + V+VN
Sbjct: 157 NINLSR---EAKPYDLPKREYYYKDIVASSFRLDNLISKVFNLSRGKAKKMIDSELVKVN 213
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
+ T+ L GD+VS+ GR ++ + +TRKG F +E+
Sbjct: 214 FVKETRPHFELECGDLVSLRNFGRFRVFNVRGNTRKGNFVIEV 256
>gi|417998984|ref|ZP_12639197.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
T71499]
gi|410539924|gb|EKQ14446.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
T71499]
Length = 259
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 16/230 (6%)
Query: 9 REVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRL--SVGHPEALTSDP 63
R VL +DF P ++ ++A ++ D+K V GGYP AER R+ + G+ A D
Sbjct: 31 RPVL-TDFTDP---RQRLIATSLVSADDDIKLVHFGGYPHAERQRIIFAPGYFSATAVDF 86
Query: 64 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 123
DI L I F H G++L G+ R+ GDII G+ QF V + D++
Sbjct: 87 DI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW-QFFVAAHMQDWVT 144
Query: 124 TSLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALASAGFKLSRSKLVNL 181
++++K+G V V T PL +Y P + ++LR+D + + GF +SR + L
Sbjct: 145 SNVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVAHGFNISRQRAKTL 202
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
I G VR+N+ + T DI+SV G GR+++ EI ++KGK V
Sbjct: 203 IQGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGKLRV 252
>gi|352516938|ref|YP_004886255.1| hypothetical protein TEH_07640 [Tetragenococcus halophilus NBRC
12172]
gi|348601045|dbj|BAK94091.1| hypothetical protein TEH_07640 [Tetragenococcus halophilus NBRC
12172]
Length = 260
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 113/223 (50%), Gaps = 7/223 (3%)
Query: 14 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 70
++FL P + E+++ E +++K GGY +AER R + S D + +
Sbjct: 36 TEFLDPRQAFILETLVRQE--SELKFRFFGGYEEAERSRCLIFPNYYEPSQEDFEIDLFN 93
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F SHG LGS++GTGI RE +GDII GE Q + E++ Y+ L K+G
Sbjct: 94 VHYPKKFTVLSHGKILGSLVGTGIRREFLGDIISDGE-NWQVFIAKEISSYVQLQLSKIG 152
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
NV V + + + + T +SLR+D + S F +SR + L G V+VN
Sbjct: 153 NVKVRLEELSYVDILIPKDGWTNENTTVSSLRLDNVISTVFNISRQRAKQLTETGKVKVN 212
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
W + L DIVS+ G GR++I I +T+KGK ++L
Sbjct: 213 WAPTQRPDFVLDLLDIVSIRGFGRLQIQVIEGTTKKGKIRLDL 255
>gi|332638197|ref|ZP_08417060.1| RNA-binding S4 domain-containing protein [Weissella cibaria KACC
11862]
Length = 261
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 114/236 (48%), Gaps = 6/236 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEA 58
+ R+A + ++FL P + + D+K +GGY AE R ++ + +
Sbjct: 23 LIRQALDEYRPVLTNFLNPRQRYIIETLVNQHDDLKWQHEGGYADAESARTVIAPAYYDI 82
Query: 59 LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA-QFLVVPE 117
SD ++ A ++I F H LG+++ GI R+ IGDII GE+G FL
Sbjct: 83 QQSDFEL-AVIAINYPQKFAELHHSTILGTLMNNGITRDSIGDII-SGEEGTWHFLTTVP 140
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+A Y+ T+++ +G V L + T +SLR+D L + G+ +SR+
Sbjct: 141 MATYIQTTMDHIGKTKVRFETASLTDISAPIEEWTEIDTTVSSLRLDTLVANGYNVSRTH 200
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVEL 232
L+ G VRVNWT V + L D+VSV GR+K + E T+K K+ V L
Sbjct: 201 AKELVERGQVRVNWTDVDRPDFVLAVNDLVSVRHFGRLKLVAENGMTKKDKWRVSL 256
>gi|154496340|ref|ZP_02035036.1| hypothetical protein BACCAP_00628 [Bacteroides capillosus ATCC
29799]
gi|150274423|gb|EDN01500.1| S4 domain protein [Pseudoflavonifractor capillosus ATCC 29799]
Length = 266
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRL--SVGHPEALTSDPDIVAA 68
H+ FL+P M + + GG+ AER C PE +D +
Sbjct: 38 HTAFLSPQERSSVEMLINASGHPSHLFYGGFEGAERTICVFLPDWQAPEDWLADGEDFPI 97
Query: 69 LSITGNFGFQP-CSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
++ F +H DFLGSILG G+ REK+GD+++ L++ E+ D+L+ LE
Sbjct: 98 CALRCTFPEDAGLTHRDFLGSILGLGLDREKVGDLLVS-PGVCDILLLKEIEDFLLLHLE 156
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
G + + L AL K + A+LR+DA+A++ F L RSK +LIS+G V
Sbjct: 157 SAGRTRLKVAPVALSALTPPKVEVKLIRDTVATLRLDAVAASAFSLPRSKAADLISSGRV 216
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
++N TK T+ GD++S G G+ + + ++KG+ +E+ +YL
Sbjct: 217 QLNHRECTKPDRTVAQGDVISCRGMGKAAVKTVGGVSKKGRIIIEVERYL 266
>gi|259047006|ref|ZP_05737407.1| S4 domain-containing protein YlmH [Granulicatella adiacens ATCC
49175]
gi|259036325|gb|EEW37580.1| S4 domain-containing protein YlmH [Granulicatella adiacens ATCC
49175]
Length = 263
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 99/202 (49%), Gaps = 5/202 (2%)
Query: 34 DVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
DV+ GGY AER C + + E D + A I F HG LGS++
Sbjct: 56 DVRYYFDGGYIDAERKRCMICPDYYEPTLEDFE-NALFHIQYPKKFATLGHGKILGSLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
G R IGDII GE Q + +Y+ LEK+G V+V + L
Sbjct: 115 LGFDRSLIGDIISNGE-DWQLFCAQNMKEYIKQQLEKIGKVAVRLEEVDYTKLIVPVDHW 173
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
+ +T+ +SLR+D + ++ F +SR + +I +G V+VNWT + L DIVS+ G
Sbjct: 174 TNIQTVVSSLRLDTVIASVFNVSRQRSKEMIESGKVKVNWTEENRPDFLLEILDIVSIRG 233
Query: 212 KGRIKIGEIN-STRKGKFAVEL 232
GR++I +I T+K K +EL
Sbjct: 234 YGRLQIQKIEGRTKKDKIKIEL 255
>gi|296331117|ref|ZP_06873591.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674272|ref|YP_003865944.1| shape determination protein [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296151761|gb|EFG92636.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305412516|gb|ADM37635.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis subsp. spizizenii str. W23]
Length = 257
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 12/223 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 68
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE LT SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILYPEYLTPEESDFEL-QA 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
++ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FNVRYAEKFVSVEHRSLLGALMGIGLKRQKFGDIVF-SETSVQLIVSADTADFVAAQLTQ 148
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
G +VS +I L L + +SLR+DA+ ++ + SR K L+ NG V+
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
VNW V + GD++SV G GR + +I T+K K+ V
Sbjct: 209 VNWKVVEDPSYMVAEGDMLSVRGFGRCSLTKIEGKTKKDKWRV 251
>gi|199598147|ref|ZP_03211569.1| Cell division protein, S4-like domain [Lactobacillus rhamnosus
HN001]
gi|229552082|ref|ZP_04440807.1| ribosomal protein S4e [Lactobacillus rhamnosus LMS2-1]
gi|385835145|ref|YP_005872919.1| S4 domain-containing protein [Lactobacillus rhamnosus ATCC 8530]
gi|418070509|ref|ZP_12707784.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
R0011]
gi|421769069|ref|ZP_16205778.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
LRHMDP2]
gi|421771332|ref|ZP_16207992.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
LRHMDP3]
gi|423077664|ref|ZP_17066356.1| S4 domain protein [Lactobacillus rhamnosus ATCC 21052]
gi|199590908|gb|EDY98992.1| Cell division protein, S4-like domain [Lactobacillus rhamnosus
HN001]
gi|229314515|gb|EEN80488.1| ribosomal protein S4e [Lactobacillus rhamnosus LMS2-1]
gi|355394636|gb|AER64066.1| S4 domain protein [Lactobacillus rhamnosus ATCC 8530]
gi|357539929|gb|EHJ23946.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
R0011]
gi|357553378|gb|EHJ35128.1| S4 domain protein [Lactobacillus rhamnosus ATCC 21052]
gi|411185465|gb|EKS52593.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
LRHMDP2]
gi|411185918|gb|EKS53044.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
LRHMDP3]
Length = 259
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 15/205 (7%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILG 91
D+K V GGYP AER RL P+ + P D + L + F H G++L
Sbjct: 55 DMKLVHFGGYPHAERQRLIFA-PDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLN 113
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-----EY 146
G+ R+ GDI+ G + QF V + D++++++ K+G V V T PL A ++
Sbjct: 114 AGLDRDVFGDIVTDG-RTWQFFVAAHMEDWVMSNITKIGRVGVHFTDYPLDAAVTPENDW 172
Query: 147 EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 206
EP SF ++LR+DA+ + GF +SR + LI G VR+N+ + T DI
Sbjct: 173 EPI---SFSV--SALRLDAIVAHGFNMSRQRAKMLIQAGKVRLNFGENDAPDAEVATSDI 227
Query: 207 VSVSGKGRIKIGEI-NSTRKGKFAV 230
+SV G GR+++ I ++KGK V
Sbjct: 228 ISVRGFGRLRLDAILGESKKGKLRV 252
>gi|229162833|ref|ZP_04290790.1| RNA-binding S4 domain protein [Bacillus cereus R309803]
gi|228620715|gb|EEK77584.1| RNA-binding S4 domain protein [Bacillus cereus R309803]
Length = 241
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+R + +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 8 KRTAEHHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFDGATPHAERKR-ALIYPDYLEVN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIIVAKEIVS 124
Query: 121 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + I +L + +E KS +SLR+D + + +SR K
Sbjct: 125 YIEMNLQSIGKVKVSLSSIQGEQILQM-HETWGEKSGTV--SSLRLDVMLAEMLHVSRQK 181
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ LI NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 182 VQPLIRNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGKTKRDKWRI 235
>gi|418010737|ref|ZP_12650508.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
Lc-10]
gi|410553316|gb|EKQ27319.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
Lc-10]
Length = 259
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 14/229 (6%)
Query: 9 REVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL--SVGHPEALTSDPD 64
R VL +DF P ++ S+++ + D+K V GGYPQAER R+ + + A +D D
Sbjct: 31 RPVL-TDFTDPRQRLIATSLVSADD--DIKLVHFGGYPQAERQRIIFAPSYFSATAADFD 87
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
I L I F H G++L G+ R+ GDII G+ QF V + D++ +
Sbjct: 88 I-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW-QFFVAAHMQDWVTS 145
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALASAGFKLSRSKLVNLI 182
+++K+G V V T PL +Y P + ++LR+D + + GF +SR + LI
Sbjct: 146 NVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVAHGFNISRQRAKTLI 203
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
G VR+N+ + T DI+SV G GR+++ EI ++KG+ V
Sbjct: 204 QGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGRLRV 252
>gi|254525647|ref|ZP_05137699.1| photosystem II S4 domain protein [Prochlorococcus marinus str. MIT
9202]
gi|221537071|gb|EEE39524.1| photosystem II S4 domain protein [Prochlorococcus marinus str. MIT
9202]
Length = 263
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 121/240 (50%), Gaps = 6/240 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A A E + F + V +E + E L D K GG+ ++R +++ + +
Sbjct: 23 IANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIYGGFSSSQRSKIACFRRDNIP 82
Query: 61 SDPDI-----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 115
+ + + GNF F + DF ++ G+ + K+GDI G++GAQ ++
Sbjct: 83 EEDMLKSNFPAQGIKFYGNFLFDNATQDDFRSLLIENGVNKVKVGDIWTIGDRGAQGIID 142
Query: 116 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF-KTIEASLRVDALASAGFKLS 174
+ L + +V V + + L RTK T+EAS R+DA+ASAGF++S
Sbjct: 143 NLDIENLDEKNFYLRDVKVKINLVGIDELLIPAGRTKKLVNTVEASTRLDAIASAGFRIS 202
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQ 234
R K++ I NG +++N + V K+ L+ GD + + KG I+I + T++ ++ V+L++
Sbjct: 203 RKKIIERIENGMLKLNGSKVNKSTINLKVGDKLELENKGFIEIINLEITKRERWKVKLLR 262
>gi|323340623|ref|ZP_08080875.1| S4 domain-containing protein YlmH [Lactobacillus ruminis ATCC
25644]
gi|335996874|ref|ZP_08562791.1| ribosomal protein S4e [Lactobacillus ruminis SPM0211]
gi|417974377|ref|ZP_12615198.1| RNA binding protein [Lactobacillus ruminis ATCC 25644]
gi|323091746|gb|EFZ34366.1| S4 domain-containing protein YlmH [Lactobacillus ruminis ATCC
25644]
gi|335351944|gb|EGM53435.1| ribosomal protein S4e [Lactobacillus ruminis SPM0211]
gi|346329374|gb|EGX97672.1| RNA binding protein [Lactobacillus ruminis ATCC 25644]
Length = 261
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 5/228 (2%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SD 62
RA + + FL P + + + + DVK GG+ +ER R+ + +PE D
Sbjct: 25 RAKDEYRPILTHFLNPRQHFIADVLIGRFDDVKLKTFGGFSGSERKRI-LFYPEYYEPQD 83
Query: 63 PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
D ++ L I F H LG++ G+ R+ IGDII G K QF E+ Y
Sbjct: 84 NDFSMSLLEINYPVKFAKLEHRTILGTLANCGLERDVIGDIITDGTKW-QFFCEKEIEPY 142
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
L+ +++++G V V IPL + +SLR D L S+ + LSR + +L
Sbjct: 143 LLENIDRIGKVKVKLGEIPLQNAVSPIEEWDHATVVLSSLRCDVLISSVYNLSRKHVKDL 202
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 228
+ V +NW ++K +R D++SV G GR+++ E+ ++KGKF
Sbjct: 203 LQTNKVSLNWMILSKADFEIRVHDVLSVRGYGRVRMDELTGVSKKGKF 250
>gi|373462939|ref|ZP_09554600.1| S4 domain protein [Lactobacillus kisonensis F0435]
gi|371765759|gb|EHO54063.1| S4 domain protein [Lactobacillus kisonensis F0435]
Length = 193
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 88/171 (51%), Gaps = 2/171 (1%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ A I F SHG LGSI+G GI R+ IGDII G QF+ E+ADY+
Sbjct: 20 ITAFQIDYPSKFATLSHGQILGSIMGAGIDRDVIGDIITDG-PNWQFMCESEMADYVRVQ 78
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
++KVG + V I + + +++ T +SLRVD L S GF +SR L+ G
Sbjct: 79 VDKVGKIKVKLKPIEPDQIIHPVDESEAVTTTVSSLRVDTLISEGFHISRHHAKELVDGG 138
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
VR+NW + L DIVSV G GRI I +I T+K K + + Y
Sbjct: 139 MVRINWVDSERPDLELSIQDIVSVRGFGRIVIKDILGVTKKEKIRIVINIY 189
>gi|258539498|ref|YP_003173997.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
Lc 705]
gi|257151174|emb|CAR90146.1| RNA-binding S4 domain protein [Lactobacillus rhamnosus Lc 705]
Length = 259
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 15/205 (7%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILG 91
D+K V GGYP AER RL P+ + P D + L + F H G++L
Sbjct: 55 DMKLVHFGGYPHAERQRLIFA-PDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLN 113
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-----EY 146
G+ R+ GDI+ G + QF V + D++++++ K+G V V T PL A ++
Sbjct: 114 AGLDRDVFGDIVTDG-RTWQFFVAAHMEDWVMSNITKIGRVGVHFTDYPLDAAVTPENDW 172
Query: 147 EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 206
EP SF ++LR+DA+ + GF +SR + LI G VR+N+ + T DI
Sbjct: 173 EPI---SFSV--SALRLDAIVAHGFNMSRQRAKMLIQAGKVRLNFGENDAPDAEVATSDI 227
Query: 207 VSVSGKGRIKIGEI-NSTRKGKFAV 230
+SV G GR+++ I ++KGK +
Sbjct: 228 ISVRGFGRLRLDAILGESKKGKLRI 252
>gi|268319699|ref|YP_003293355.1| hypothetical protein FI9785_1227 [Lactobacillus johnsonii FI9785]
gi|262398074|emb|CAX67088.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
johnsonii FI9785]
Length = 265
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 5/227 (2%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADV-KAVAQGGYPQAERCRLSVGH-PEALTSDPDI 65
+ E + +DFL P +E + E + + + GG+ AE+ R+ + E D
Sbjct: 34 KNEPILTDFLNP---REQYIFREIVGGYAQLYSFGGFSNAEKKRMLLCEWSEGYKPDEFN 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
++ L I + +H LG + GI + GDII QF V EL DY +
Sbjct: 91 ISLLEIAYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGNWQFFVKAELKDYFLEE 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
++++G V + +PL + + ++ ++ SLR+DA+ SA LSRS++ +I G
Sbjct: 151 IDRIGRTKVKLSELPLSKVLMQEDDSEEMTSVTISLRLDAVISAITNLSRSQVKKIIEAG 210
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+V++NW VT++ + D++S+ GR +I + +T+KGK +E+
Sbjct: 211 EVKLNWHLVTQSNIIISVQDMLSIRHYGRYEIINLATTKKGKKRLEI 257
>gi|392987361|ref|YP_006485954.1| S4 domain-containing protein [Enterococcus hirae ATCC 9790]
gi|392334781|gb|AFM69063.1| S4 domain-containing protein [Enterococcus hirae ATCC 9790]
Length = 293
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 17/232 (7%)
Query: 14 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
+DFL P ++S + LE L +++ GGY QAER R + +D D V+
Sbjct: 36 TDFLDP---RQSYI-LETLIRQDSELHFSFYGGYEQAERKRCLIFPDYYEPTDEDFEVSL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
I F +HG LG+++GTGI R GDII G++ Q + E+ ++ T + K
Sbjct: 92 YEIHYPSKFASLTHGKVLGTLVGTGIKRAYFGDIISDGDR-WQVFIAREVEQFVATQVTK 150
Query: 129 VGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
+G VSV P+ E P+ T+ T+ SLR+D++ S + +SR + LI +G
Sbjct: 151 IGKVSVRME--PIKYTELLVPKDGWTQERGTV-TSLRLDSVISEIYNISRQRSKQLIESG 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
V+VNWT T+ L DIVS+ G GRI+I E+ T+K L+ Y+
Sbjct: 208 KVKVNWTENTRPDFLLELLDIVSIRGFGRIQIQELEGKTKKKNTGYYLVYYV 259
>gi|336054343|ref|YP_004562630.1| cell-division protein [Lactobacillus kefiranofaciens ZW3]
gi|333957720|gb|AEG40528.1| Cell-division protein [Lactobacillus kefiranofaciens ZW3]
Length = 266
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 9/225 (4%)
Query: 12 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP-DI-VAAL 69
L +DFL P K +++ DV GGYP+AE+ R+ + E L P D +
Sbjct: 38 LLTDFLDPG--KRTILKTVVGNDVFIQEYGGYPEAEKKRVYLSE-EWLNLQPADYQIQPY 94
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
I + F SH LG++ +GI + GDII + QF EL D+ +++V
Sbjct: 95 EIKYSQKFNRISHSAILGTLANSGIDTDTFGDIITDSKGNWQFFAKKELTDFFEEQIDRV 154
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLISNGDV 187
G V P+ + P S K IE AS+R+DA+ + + SR ++ +I V
Sbjct: 155 GRSQVKLK--PISFKQVLVPEDDSVKQIEIIASMRIDAVLAGISRKSRGQIQKMIEANLV 212
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
++NW V + ++ D++S+ GRIKI +I++TRKGK+ V L
Sbjct: 213 KLNWHDVMDSNIMVKENDVLSLRHFGRIKIEDISATRKGKYKVVL 257
>gi|431779317|ref|ZP_19567512.1| S4 domain-containing protein [Enterococcus faecium E4389]
gi|430642172|gb|ELB77953.1| S4 domain-containing protein [Enterococcus faecium E4389]
Length = 260
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 19/227 (8%)
Query: 14 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 67
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIQRSYFGDIISDGDRW-QVFIANEVDHFVAAQVT 149
Query: 128 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEA 206
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
G V+VNWT T+ L DI+SV G GR++I E+ T+K K+ V
Sbjct: 207 GKVKVNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253
>gi|431765945|ref|ZP_19554444.1| S4 domain-containing protein [Enterococcus faecium E4215]
gi|430627388|gb|ELB63890.1| S4 domain-containing protein [Enterococcus faecium E4215]
Length = 260
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 19/227 (8%)
Query: 14 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 67
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVKEDFE-TA 90
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVAAQVT 149
Query: 128 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEA 206
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
G V+VNWT T+ L DI+SV G GR++I E+ T+K K+ V
Sbjct: 207 GKVKVNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253
>gi|425058743|ref|ZP_18462119.1| S4 domain protein [Enterococcus faecium 504]
gi|431446024|ref|ZP_19513706.1| S4 domain-containing protein [Enterococcus faecium E1630]
gi|431760585|ref|ZP_19549182.1| S4 domain-containing protein [Enterococcus faecium E3346]
gi|403037598|gb|EJY48863.1| S4 domain protein [Enterococcus faecium 504]
gi|430585668|gb|ELB23940.1| S4 domain-containing protein [Enterococcus faecium E1630]
gi|430623670|gb|ELB60348.1| S4 domain-containing protein [Enterococcus faecium E3346]
Length = 260
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 19/227 (8%)
Query: 14 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 67
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYKQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVAAQVT 149
Query: 128 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEA 206
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
G V+VNWT T+ L DI+SV G GR++I E+ T+K K+ V
Sbjct: 207 GKVKVNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253
>gi|423401260|ref|ZP_17378433.1| hypothetical protein ICW_01658 [Bacillus cereus BAG2X1-2]
gi|423478036|ref|ZP_17454751.1| hypothetical protein IEO_03494 [Bacillus cereus BAG6X1-1]
gi|401654250|gb|EJS71793.1| hypothetical protein ICW_01658 [Bacillus cereus BAG2X1-2]
gi|402428198|gb|EJV60295.1| hypothetical protein IEO_03494 [Bacillus cereus BAG6X1-1]
Length = 255
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKR-ALIYPDYLEVN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSPVQGEKILQMQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + +GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PFIKNGLVKVNWKTVEQTSYECYSGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|69244706|ref|ZP_00602970.1| RNA-binding S4 [Enterococcus faecium DO]
gi|257879374|ref|ZP_05659027.1| RNA binding protein S4 [Enterococcus faecium 1,230,933]
gi|257881760|ref|ZP_05661413.1| RNA binding protein S4 [Enterococcus faecium 1,231,502]
gi|257885186|ref|ZP_05664839.1| RNA binding protein S4 [Enterococcus faecium 1,231,501]
gi|257890200|ref|ZP_05669853.1| RNA binding protein S4 [Enterococcus faecium 1,231,410]
gi|257893528|ref|ZP_05673181.1| RNA binding protein S4 [Enterococcus faecium 1,231,408]
gi|260558816|ref|ZP_05831005.1| RNA binding protein S4 [Enterococcus faecium C68]
gi|293553193|ref|ZP_06673830.1| S4 domain protein [Enterococcus faecium E1039]
gi|293560466|ref|ZP_06676958.1| S4 domain protein [Enterococcus faecium E1162]
gi|293568292|ref|ZP_06679616.1| S4 domain protein [Enterococcus faecium E1071]
gi|294621611|ref|ZP_06700776.1| S4 domain protein [Enterococcus faecium U0317]
gi|314937863|ref|ZP_07845179.1| S4 domain protein [Enterococcus faecium TX0133a04]
gi|314941354|ref|ZP_07848247.1| S4 domain protein [Enterococcus faecium TX0133C]
gi|314950113|ref|ZP_07853399.1| S4 domain protein [Enterococcus faecium TX0082]
gi|314951346|ref|ZP_07854400.1| S4 domain protein [Enterococcus faecium TX0133A]
gi|314992823|ref|ZP_07858224.1| S4 domain protein [Enterococcus faecium TX0133B]
gi|314997983|ref|ZP_07862878.1| S4 domain protein [Enterococcus faecium TX0133a01]
gi|383328093|ref|YP_005353977.1| S4 domain-containing protein [Enterococcus faecium Aus0004]
gi|389867983|ref|YP_006375406.1| 30S ribosomal protein S4e [Enterococcus faecium DO]
gi|406580474|ref|ZP_11055667.1| S4 domain-containing protein [Enterococcus sp. GMD4E]
gi|406582691|ref|ZP_11057789.1| S4 domain-containing protein [Enterococcus sp. GMD3E]
gi|406584966|ref|ZP_11059962.1| S4 domain-containing protein [Enterococcus sp. GMD2E]
gi|406590349|ref|ZP_11064718.1| S4 domain-containing protein [Enterococcus sp. GMD1E]
gi|410937026|ref|ZP_11368888.1| 30S ribosomal protein S4e [Enterococcus sp. GMD5E]
gi|415898393|ref|ZP_11551278.1| S4 domain protein [Enterococcus faecium E4453]
gi|416130928|ref|ZP_11597591.1| S4 domain protein [Enterococcus faecium E4452]
gi|424789435|ref|ZP_18216089.1| S4 domain protein [Enterococcus faecium V689]
gi|424809970|ref|ZP_18235338.1| S4 domain protein [Enterococcus faecium S447]
gi|424826042|ref|ZP_18250983.1| S4 domain protein [Enterococcus faecium R501]
gi|424859457|ref|ZP_18283465.1| S4 domain protein [Enterococcus faecium R499]
gi|424901153|ref|ZP_18324690.1| S4 domain protein [Enterococcus faecium R497]
gi|424951728|ref|ZP_18366796.1| S4 domain protein [Enterococcus faecium R496]
gi|424955098|ref|ZP_18369958.1| S4 domain protein [Enterococcus faecium R494]
gi|424958662|ref|ZP_18373298.1| S4 domain protein [Enterococcus faecium R446]
gi|424959601|ref|ZP_18374179.1| S4 domain protein [Enterococcus faecium P1986]
gi|424964062|ref|ZP_18378203.1| S4 domain protein [Enterococcus faecium P1190]
gi|424969217|ref|ZP_18382800.1| S4 domain protein [Enterococcus faecium P1140]
gi|424971987|ref|ZP_18385384.1| S4 domain protein [Enterococcus faecium P1139]
gi|424973331|ref|ZP_18386619.1| S4 domain protein [Enterococcus faecium P1137]
gi|424977779|ref|ZP_18390764.1| S4 domain protein [Enterococcus faecium P1123]
gi|424982082|ref|ZP_18394765.1| S4 domain protein [Enterococcus faecium ERV99]
gi|424985815|ref|ZP_18398275.1| S4 domain protein [Enterococcus faecium ERV69]
gi|424988378|ref|ZP_18400700.1| S4 domain protein [Enterococcus faecium ERV38]
gi|424990629|ref|ZP_18402835.1| S4 domain protein [Enterococcus faecium ERV26]
gi|424994834|ref|ZP_18406753.1| S4 domain protein [Enterococcus faecium ERV168]
gi|424998820|ref|ZP_18410483.1| S4 domain protein [Enterococcus faecium ERV165]
gi|425002663|ref|ZP_18414083.1| S4 domain protein [Enterococcus faecium ERV161]
gi|425004807|ref|ZP_18416092.1| S4 domain protein [Enterococcus faecium ERV102]
gi|425007879|ref|ZP_18418994.1| S4 domain protein [Enterococcus faecium ERV1]
gi|425009763|ref|ZP_18420757.1| S4 domain protein [Enterococcus faecium E422]
gi|425014536|ref|ZP_18425210.1| S4 domain protein [Enterococcus faecium E417]
gi|425019156|ref|ZP_18429542.1| S4 domain protein [Enterococcus faecium C621]
gi|425019565|ref|ZP_18429913.1| S4 domain protein [Enterococcus faecium C497]
gi|425023876|ref|ZP_18433971.1| S4 domain protein [Enterococcus faecium C1904]
gi|425031128|ref|ZP_18436271.1| S4 domain protein [Enterococcus faecium 515]
gi|425036628|ref|ZP_18441370.1| S4 domain protein [Enterococcus faecium 514]
gi|425039755|ref|ZP_18444259.1| S4 domain protein [Enterococcus faecium 513]
gi|425043084|ref|ZP_18447353.1| S4 domain protein [Enterococcus faecium 511]
gi|425046437|ref|ZP_18450453.1| S4 domain protein [Enterococcus faecium 510]
gi|425048714|ref|ZP_18452605.1| S4 domain protein [Enterococcus faecium 509]
gi|425052483|ref|ZP_18456088.1| S4 domain protein [Enterococcus faecium 506]
gi|425061064|ref|ZP_18464329.1| S4 domain protein [Enterococcus faecium 503]
gi|427395406|ref|ZP_18888328.1| hypothetical protein HMPREF9307_00504 [Enterococcus durans
FB129-CNAB-4]
gi|430821334|ref|ZP_19439945.1| S4 domain-containing protein [Enterococcus faecium E0045]
gi|430824069|ref|ZP_19442636.1| S4 domain-containing protein [Enterococcus faecium E0120]
gi|430829505|ref|ZP_19447598.1| S4 domain-containing protein [Enterococcus faecium E0269]
gi|430831540|ref|ZP_19449591.1| S4 domain-containing protein [Enterococcus faecium E0333]
gi|430833721|ref|ZP_19451732.1| S4 domain-containing protein [Enterococcus faecium E0679]
gi|430837031|ref|ZP_19455007.1| S4 domain-containing protein [Enterococcus faecium E0680]
gi|430839109|ref|ZP_19457051.1| S4 domain-containing protein [Enterococcus faecium E0688]
gi|430844773|ref|ZP_19462670.1| S4 domain-containing protein [Enterococcus faecium E1050]
gi|430846891|ref|ZP_19464745.1| S4 domain-containing protein [Enterococcus faecium E1133]
gi|430853479|ref|ZP_19471207.1| S4 domain-containing protein [Enterococcus faecium E1258]
gi|430856778|ref|ZP_19474462.1| S4 domain-containing protein [Enterococcus faecium E1392]
gi|430859680|ref|ZP_19477289.1| S4 domain-containing protein [Enterococcus faecium E1552]
gi|430862432|ref|ZP_19479749.1| S4 domain-containing protein [Enterococcus faecium E1573]
gi|430867382|ref|ZP_19482376.1| S4 domain-containing protein [Enterococcus faecium E1574]
gi|430869880|ref|ZP_19483035.1| S4 domain-containing protein [Enterococcus faecium E1575]
gi|430963172|ref|ZP_19487464.1| S4 domain-containing protein [Enterococcus faecium E1576]
gi|431011090|ref|ZP_19489834.1| S4 domain-containing protein [Enterococcus faecium E1578]
gi|431237083|ref|ZP_19503226.1| S4 domain-containing protein [Enterococcus faecium E1622]
gi|431264018|ref|ZP_19505906.1| S4 domain-containing protein [Enterococcus faecium E1623]
gi|431290540|ref|ZP_19506675.1| S4 domain-containing protein [Enterococcus faecium E1626]
gi|431382762|ref|ZP_19511355.1| S4 domain-containing protein [Enterococcus faecium E1627]
gi|431523808|ref|ZP_19516833.1| S4 domain-containing protein [Enterococcus faecium E1634]
gi|431536449|ref|ZP_19517409.1| S4 domain-containing protein [Enterococcus faecium E1731]
gi|431743241|ref|ZP_19532121.1| S4 domain-containing protein [Enterococcus faecium E2071]
gi|431745479|ref|ZP_19534323.1| S4 domain-containing protein [Enterococcus faecium E2134]
gi|431747873|ref|ZP_19536637.1| S4 domain-containing protein [Enterococcus faecium E2297]
gi|431754100|ref|ZP_19542765.1| S4 domain-containing protein [Enterococcus faecium E2883]
gi|431768786|ref|ZP_19557219.1| S4 domain-containing protein [Enterococcus faecium E1321]
gi|431770078|ref|ZP_19558481.1| S4 domain-containing protein [Enterococcus faecium E1644]
gi|431774394|ref|ZP_19562702.1| S4 domain-containing protein [Enterococcus faecium E2369]
gi|431777051|ref|ZP_19565308.1| S4 domain-containing protein [Enterococcus faecium E2560]
gi|431781358|ref|ZP_19569506.1| S4 domain-containing protein [Enterococcus faecium E6012]
gi|431784989|ref|ZP_19573024.1| S4 domain-containing protein [Enterococcus faecium E6045]
gi|447913352|ref|YP_007394764.1| hypothetical protein M7W_2098 [Enterococcus faecium NRRL B-2354]
gi|68196297|gb|EAN10726.1| RNA-binding S4 [Enterococcus faecium DO]
gi|257813602|gb|EEV42360.1| RNA binding protein S4 [Enterococcus faecium 1,230,933]
gi|257817418|gb|EEV44746.1| RNA binding protein S4 [Enterococcus faecium 1,231,502]
gi|257821038|gb|EEV48172.1| RNA binding protein S4 [Enterococcus faecium 1,231,501]
gi|257826560|gb|EEV53186.1| RNA binding protein S4 [Enterococcus faecium 1,231,410]
gi|257829907|gb|EEV56514.1| RNA binding protein S4 [Enterococcus faecium 1,231,408]
gi|260075275|gb|EEW63588.1| RNA binding protein S4 [Enterococcus faecium C68]
gi|291589004|gb|EFF20828.1| S4 domain protein [Enterococcus faecium E1071]
gi|291598776|gb|EFF29828.1| S4 domain protein [Enterococcus faecium U0317]
gi|291602603|gb|EFF32818.1| S4 domain protein [Enterococcus faecium E1039]
gi|291605614|gb|EFF35056.1| S4 domain protein [Enterococcus faecium E1162]
gi|313587995|gb|EFR66840.1| S4 domain protein [Enterococcus faecium TX0133a01]
gi|313592627|gb|EFR71472.1| S4 domain protein [Enterococcus faecium TX0133B]
gi|313596563|gb|EFR75408.1| S4 domain protein [Enterococcus faecium TX0133A]
gi|313599777|gb|EFR78620.1| S4 domain protein [Enterococcus faecium TX0133C]
gi|313642721|gb|EFS07301.1| S4 domain protein [Enterococcus faecium TX0133a04]
gi|313643554|gb|EFS08134.1| S4 domain protein [Enterococcus faecium TX0082]
gi|364090061|gb|EHM32692.1| S4 domain protein [Enterococcus faecium E4453]
gi|364093803|gb|EHM36039.1| S4 domain protein [Enterococcus faecium E4452]
gi|378937787|gb|AFC62859.1| S4 domain protein [Enterococcus faecium Aus0004]
gi|388533232|gb|AFK58424.1| ribosomal protein S4e [Enterococcus faecium DO]
gi|402918203|gb|EJX38917.1| S4 domain protein [Enterococcus faecium S447]
gi|402922115|gb|EJX42520.1| S4 domain protein [Enterococcus faecium V689]
gi|402924711|gb|EJX44903.1| S4 domain protein [Enterococcus faecium R501]
gi|402926489|gb|EJX46525.1| S4 domain protein [Enterococcus faecium R499]
gi|402928949|gb|EJX48755.1| S4 domain protein [Enterococcus faecium R496]
gi|402931322|gb|EJX50908.1| S4 domain protein [Enterococcus faecium R497]
gi|402934985|gb|EJX54278.1| S4 domain protein [Enterococcus faecium R494]
gi|402939559|gb|EJX58464.1| S4 domain protein [Enterococcus faecium R446]
gi|402947476|gb|EJX65684.1| S4 domain protein [Enterococcus faecium P1190]
gi|402949173|gb|EJX67254.1| S4 domain protein [Enterococcus faecium P1140]
gi|402950115|gb|EJX68130.1| S4 domain protein [Enterococcus faecium P1986]
gi|402956926|gb|EJX74349.1| S4 domain protein [Enterococcus faecium P1139]
gi|402958967|gb|EJX76248.1| S4 domain protein [Enterococcus faecium P1137]
gi|402961838|gb|EJX78833.1| S4 domain protein [Enterococcus faecium ERV99]
gi|402964521|gb|EJX81295.1| S4 domain protein [Enterococcus faecium P1123]
gi|402965066|gb|EJX81804.1| S4 domain protein [Enterococcus faecium ERV69]
gi|402972077|gb|EJX88302.1| S4 domain protein [Enterococcus faecium ERV38]
gi|402978932|gb|EJX94633.1| S4 domain protein [Enterococcus faecium ERV168]
gi|402979117|gb|EJX94804.1| S4 domain protein [Enterococcus faecium ERV26]
gi|402981857|gb|EJX97364.1| S4 domain protein [Enterococcus faecium ERV165]
gi|402982846|gb|EJX98283.1| S4 domain protein [Enterococcus faecium ERV161]
gi|402988452|gb|EJY03459.1| S4 domain protein [Enterococcus faecium ERV102]
gi|402994304|gb|EJY08847.1| S4 domain protein [Enterococcus faecium ERV1]
gi|402998603|gb|EJY12852.1| S4 domain protein [Enterococcus faecium E417]
gi|402999201|gb|EJY13403.1| S4 domain protein [Enterococcus faecium C621]
gi|403002017|gb|EJY16030.1| S4 domain protein [Enterococcus faecium E422]
gi|403008484|gb|EJY21988.1| S4 domain protein [Enterococcus faecium C1904]
gi|403011116|gb|EJY24445.1| S4 domain protein [Enterococcus faecium C497]
gi|403014169|gb|EJY27187.1| S4 domain protein [Enterococcus faecium 514]
gi|403014741|gb|EJY27711.1| S4 domain protein [Enterococcus faecium 513]
gi|403016297|gb|EJY29121.1| S4 domain protein [Enterococcus faecium 515]
gi|403021323|gb|EJY33790.1| S4 domain protein [Enterococcus faecium 511]
gi|403024300|gb|EJY36470.1| S4 domain protein [Enterococcus faecium 510]
gi|403030029|gb|EJY41749.1| S4 domain protein [Enterococcus faecium 509]
gi|403034275|gb|EJY45738.1| S4 domain protein [Enterococcus faecium 506]
gi|403042001|gb|EJY52977.1| S4 domain protein [Enterococcus faecium 503]
gi|404453851|gb|EKA00883.1| S4 domain-containing protein [Enterococcus sp. GMD4E]
gi|404457681|gb|EKA04211.1| S4 domain-containing protein [Enterococcus sp. GMD3E]
gi|404463185|gb|EKA08881.1| S4 domain-containing protein [Enterococcus sp. GMD2E]
gi|404469418|gb|EKA14224.1| S4 domain-containing protein [Enterococcus sp. GMD1E]
gi|410734619|gb|EKQ76538.1| 30S ribosomal protein S4e [Enterococcus sp. GMD5E]
gi|425723906|gb|EKU86792.1| hypothetical protein HMPREF9307_00504 [Enterococcus durans
FB129-CNAB-4]
gi|430438597|gb|ELA49014.1| S4 domain-containing protein [Enterococcus faecium E0045]
gi|430441453|gb|ELA51550.1| S4 domain-containing protein [Enterococcus faecium E0120]
gi|430480944|gb|ELA58115.1| S4 domain-containing protein [Enterococcus faecium E0269]
gi|430481423|gb|ELA58579.1| S4 domain-containing protein [Enterococcus faecium E0333]
gi|430486126|gb|ELA62994.1| S4 domain-containing protein [Enterococcus faecium E0679]
gi|430487812|gb|ELA64520.1| S4 domain-containing protein [Enterococcus faecium E0680]
gi|430491106|gb|ELA67588.1| S4 domain-containing protein [Enterococcus faecium E0688]
gi|430496204|gb|ELA72309.1| S4 domain-containing protein [Enterococcus faecium E1050]
gi|430538445|gb|ELA78737.1| S4 domain-containing protein [Enterococcus faecium E1133]
gi|430540560|gb|ELA80762.1| S4 domain-containing protein [Enterococcus faecium E1258]
gi|430543217|gb|ELA83292.1| S4 domain-containing protein [Enterococcus faecium E1552]
gi|430543891|gb|ELA83943.1| S4 domain-containing protein [Enterococcus faecium E1392]
gi|430549010|gb|ELA88857.1| S4 domain-containing protein [Enterococcus faecium E1573]
gi|430550393|gb|ELA90189.1| S4 domain-containing protein [Enterococcus faecium E1574]
gi|430555597|gb|ELA95134.1| S4 domain-containing protein [Enterococcus faecium E1576]
gi|430559257|gb|ELA98616.1| S4 domain-containing protein [Enterococcus faecium E1575]
gi|430560112|gb|ELA99418.1| S4 domain-containing protein [Enterococcus faecium E1578]
gi|430572647|gb|ELB11497.1| S4 domain-containing protein [Enterococcus faecium E1622]
gi|430576454|gb|ELB15105.1| S4 domain-containing protein [Enterococcus faecium E1623]
gi|430581133|gb|ELB19580.1| S4 domain-containing protein [Enterococcus faecium E1627]
gi|430582640|gb|ELB21062.1| S4 domain-containing protein [Enterococcus faecium E1626]
gi|430584766|gb|ELB23080.1| S4 domain-containing protein [Enterococcus faecium E1634]
gi|430594936|gb|ELB32888.1| S4 domain-containing protein [Enterococcus faecium E1731]
gi|430607075|gb|ELB44403.1| S4 domain-containing protein [Enterococcus faecium E2071]
gi|430610235|gb|ELB47387.1| S4 domain-containing protein [Enterococcus faecium E2134]
gi|430614749|gb|ELB51720.1| S4 domain-containing protein [Enterococcus faecium E2297]
gi|430620023|gb|ELB56826.1| S4 domain-containing protein [Enterococcus faecium E2883]
gi|430628654|gb|ELB65088.1| S4 domain-containing protein [Enterococcus faecium E1321]
gi|430634143|gb|ELB70278.1| S4 domain-containing protein [Enterococcus faecium E2369]
gi|430635831|gb|ELB71910.1| S4 domain-containing protein [Enterococcus faecium E1644]
gi|430639992|gb|ELB75846.1| S4 domain-containing protein [Enterococcus faecium E2560]
gi|430648545|gb|ELB83951.1| S4 domain-containing protein [Enterococcus faecium E6045]
gi|430649719|gb|ELB85087.1| S4 domain-containing protein [Enterococcus faecium E6012]
gi|445189061|gb|AGE30703.1| hypothetical protein M7W_2098 [Enterococcus faecium NRRL B-2354]
Length = 260
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 19/227 (8%)
Query: 14 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 67
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVAAQVT 149
Query: 128 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEA 206
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
G V+VNWT T+ L DI+SV G GR++I E+ T+K K+ V
Sbjct: 207 GKVKVNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253
>gi|428279135|ref|YP_005560870.1| hypothetical protein BSNT_02544 [Bacillus subtilis subsp. natto
BEST195]
gi|291484092|dbj|BAI85167.1| hypothetical protein BSNT_02544 [Bacillus subtilis subsp. natto
BEST195]
Length = 257
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 14/224 (6%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI----VA 67
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE +T P++ +
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILYPEYIT--PEVSDFELQ 88
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
A ++ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L
Sbjct: 89 AFNVCYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETAVQLIVSADTADFVAAQLT 147
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+ G +VS +I L L + +SLR+DA+ ++ + SR K L+ NG V
Sbjct: 148 QAGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLV 207
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+VNW V + GD++S+ G GR + +I T+K K+ V
Sbjct: 208 KVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251
>gi|257899130|ref|ZP_05678783.1| RNA binding protein S4 [Enterococcus faecium Com15]
gi|293571725|ref|ZP_06682744.1| S4 domain protein [Enterococcus faecium E980]
gi|430840726|ref|ZP_19458649.1| S4 domain-containing protein [Enterococcus faecium E1007]
gi|431066287|ref|ZP_19493910.1| S4 domain-containing protein [Enterococcus faecium E1604]
gi|431099331|ref|ZP_19496497.1| S4 domain-containing protein [Enterococcus faecium E1613]
gi|431594952|ref|ZP_19522058.1| S4 domain-containing protein [Enterococcus faecium E1861]
gi|431738282|ref|ZP_19527227.1| S4 domain-containing protein [Enterococcus faecium E1972]
gi|431741883|ref|ZP_19530783.1| S4 domain-containing protein [Enterococcus faecium E2039]
gi|257837042|gb|EEV62116.1| RNA binding protein S4 [Enterococcus faecium Com15]
gi|291608182|gb|EFF37485.1| S4 domain protein [Enterococcus faecium E980]
gi|430494932|gb|ELA71150.1| S4 domain-containing protein [Enterococcus faecium E1007]
gi|430568326|gb|ELB07374.1| S4 domain-containing protein [Enterococcus faecium E1604]
gi|430570832|gb|ELB09771.1| S4 domain-containing protein [Enterococcus faecium E1613]
gi|430590878|gb|ELB28924.1| S4 domain-containing protein [Enterococcus faecium E1861]
gi|430597720|gb|ELB35503.1| S4 domain-containing protein [Enterococcus faecium E1972]
gi|430601036|gb|ELB38658.1| S4 domain-containing protein [Enterococcus faecium E2039]
Length = 260
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 19/227 (8%)
Query: 14 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 67
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVAAQVT 149
Query: 128 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMILPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEA 206
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
G V+VNWT T+ L DI+SV G GR++I E+ T+K K+ V
Sbjct: 207 GKVKVNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253
>gi|257877585|ref|ZP_05657238.1| S4 domain-containing protein [Enterococcus casseliflavus EC20]
gi|257811751|gb|EEV40571.1| S4 domain-containing protein [Enterococcus casseliflavus EC20]
Length = 260
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 108/216 (50%), Gaps = 8/216 (3%)
Query: 14 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAAL 69
+DFL P + ES+ + + D+ GGY AER C + + E T + D+
Sbjct: 36 TDFLDPRQAYILESL--IRQSTDLSFRFFGGYEAAERRRCLIYPDYYEPTTDEFDM-TLF 92
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+I F SHG LG+++GTG+ RE GDI+ GE Q V E++ ++ ++K+
Sbjct: 93 TIQYPKKFTVLSHGKVLGTLMGTGVKREYFGDILSDGEIW-QVFVAAEVSHFIQLQVDKI 151
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
GNVSV L + +SLR+D + SA + +SR + LI +G V+V
Sbjct: 152 GNVSVRLEETKYTELIVPKDGWTEERETVSSLRLDTVISAVYNISRQRSKQLIESGKVKV 211
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
NWT + L DIVSV G GRI+I + T K
Sbjct: 212 NWTEALRPDFVLDLLDIVSVRGFGRIQIQGLEGTTK 247
>gi|418007881|ref|ZP_12647753.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UW4]
gi|410547966|gb|EKQ22187.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UW4]
Length = 259
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 14/229 (6%)
Query: 9 REVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL--SVGHPEALTSDPD 64
R VL +DF P ++ S+++ + D+K V GGYP AER R+ + + A +D D
Sbjct: 31 RPVL-TDFTDPRQRLIATSLVSADD--DIKIVHFGGYPHAERQRIIFAPSYFSATAADFD 87
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
I L I F H G++L G+ R+ GDII G+ QF V + D++ +
Sbjct: 88 I-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW-QFFVAAHMQDWVTS 145
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALASAGFKLSRSKLVNLI 182
+++K+G V V T PL +Y P + ++LR+D + + GF +SR + LI
Sbjct: 146 NVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVAHGFNISRQRAKTLI 203
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
G VR+N+ + T DI+SV G GR+++ EI ++KGK V
Sbjct: 204 QGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGKLRV 252
>gi|116494769|ref|YP_806503.1| cell division protein [Lactobacillus casei ATCC 334]
gi|417983352|ref|ZP_12623990.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
21/1]
gi|417992792|ref|ZP_12633144.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
CRF28]
gi|417996141|ref|ZP_12636424.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
M36]
gi|418001912|ref|ZP_12642040.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UCD174]
gi|418014870|ref|ZP_12654459.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
Lpc-37]
gi|116104919|gb|ABJ70061.1| Cell division protein, S4-like domain [Lactobacillus casei ATCC
334]
gi|410528298|gb|EKQ03151.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
21/1]
gi|410532583|gb|EKQ07285.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
CRF28]
gi|410535850|gb|EKQ10460.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
M36]
gi|410545357|gb|EKQ19657.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UCD174]
gi|410552692|gb|EKQ26707.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
Lpc-37]
Length = 259
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 14/229 (6%)
Query: 9 REVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL--SVGHPEALTSDPD 64
R VL +DF P ++ S+++ + D+K V GGYP AER R+ + + A +D D
Sbjct: 31 RPVL-TDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRIIFAPSYFSATAADFD 87
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
I L I F H G++L G+ R+ GDII G+ QF V + D++ +
Sbjct: 88 I-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW-QFFVAAHMQDWVTS 145
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALASAGFKLSRSKLVNLI 182
+++K+G V V T PL +Y P + ++LR+D + + GF +SR + LI
Sbjct: 146 NVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVAHGFNISRQRAKTLI 203
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
G VR+N+ + T DI+SV G GR+++ EI ++KGK V
Sbjct: 204 QGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGKLRV 252
>gi|392949181|ref|ZP_10314772.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus pentosus KCA1]
gi|392435596|gb|EIW13529.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus pentosus KCA1]
Length = 261
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 113/236 (47%), Gaps = 16/236 (6%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP--EALTSD 62
A R +L + FL P + + +L DV+ A GG+ AE R+ P E T+D
Sbjct: 28 ADQYRPIL-TAFLNPRQVYIAQTLANQLDDVRMRAYGGFEGAELQRILFYPPYYEPETAD 86
Query: 63 PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 122
I +I F HG LG++ G+ R+ GDII GE QF+ E+ADY
Sbjct: 87 FQITL-FNIVYPVKFATLKHGQILGTLANAGVERDVFGDIITDGEHW-QFVCESEMADYF 144
Query: 123 ITSLEKVGNVSVSCT-----RIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+++ G V T ++ + ++EP T +SLR D++ A F LSR
Sbjct: 145 NDQIDRFGKTKVHLTAVAGSKVIVREDDWEP-----VTTTVSSLRADSIIKAAFNLSRHH 199
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
LI G VR+NW + K L D++SV+ GR+++ EI+ T+K + + L
Sbjct: 200 AKELIEGGKVRLNWAELPKADYELALLDMLSVNHYGRVRLAEISGETKKARLRITL 255
>gi|366086111|ref|ZP_09452596.1| RNA-binding S4 domain-containing protein [Lactobacillus zeae KCTC
3804]
Length = 259
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 20/235 (8%)
Query: 6 SSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 63
+ R VL +DF P ++ +S+++ D+K + GGYP AER RL P+ + P
Sbjct: 28 TEYRAVL-TDFTDPRQRLIADSLISAHD--DMKLMHFGGYPHAERQRLIFA-PDYYEAQP 83
Query: 64 DI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADY 121
D + L I F H G++L G+ R+ GDII G+ QF V + D+
Sbjct: 84 DDFDIRLLQIVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIITDGQTW-QFFVAAHMEDW 142
Query: 122 LITSLEKVGNVSVSCTRIPLLAL-----EYEPPRTKSFKTIEASLRVDALASAGFKLSRS 176
+++++ K+G V V T PL ++EP F ++LR+D + + GF +SR
Sbjct: 143 VMSNITKIGRVGVHFTDYPLDQAVTPENDWEPI---DFSI--SALRLDTVVAHGFNMSRQ 197
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
+ LI G VR+N+ + T DI+SV G GR+++ I T+KGK V
Sbjct: 198 RAKVLIQGGKVRLNFGENEAPDAEVATSDIISVRGFGRLRLDAILGETKKGKLRV 252
>gi|423395802|ref|ZP_17373003.1| hypothetical protein ICU_01496 [Bacillus cereus BAG2X1-1]
gi|423406678|ref|ZP_17383827.1| hypothetical protein ICY_01363 [Bacillus cereus BAG2X1-3]
gi|401653544|gb|EJS71088.1| hypothetical protein ICU_01496 [Bacillus cereus BAG2X1-1]
gi|401659968|gb|EJS77451.1| hypothetical protein ICY_01363 [Bacillus cereus BAG2X1-3]
Length = 255
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+R + +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGATPHAER-RRAIIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + T+ +SLR+D + + LSR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSSVQGEQILQINETWGEKSGTV-SSLRLDVMLAEMLHLSRQKIQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PLIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|257867506|ref|ZP_05647159.1| S4 domain-containing protein [Enterococcus casseliflavus EC30]
gi|257873835|ref|ZP_05653488.1| S4 domain-containing protein [Enterococcus casseliflavus EC10]
gi|257801562|gb|EEV30492.1| S4 domain-containing protein [Enterococcus casseliflavus EC30]
gi|257807999|gb|EEV36821.1| S4 domain-containing protein [Enterococcus casseliflavus EC10]
Length = 260
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 108/216 (50%), Gaps = 8/216 (3%)
Query: 14 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAAL 69
+DFL P + ES+ + + D+ GGY AER C + + E T + D+
Sbjct: 36 TDFLDPRQAYILESL--IRQSTDLSFRFFGGYEAAERRRCLIYPDYYEPTTDEFDM-TLF 92
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+I F SHG LG+++GTG+ RE GDI+ GE Q V E++ ++ ++K+
Sbjct: 93 TIQYPKKFTVLSHGKVLGTLMGTGVKREYFGDILSDGEIW-QVFVATEVSHFIQLQVDKI 151
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
GNVSV L + +SLR+D + SA + +SR + LI +G V+V
Sbjct: 152 GNVSVRLEETKYTELIVPKDGWTEERETVSSLRLDTVISAVYNISRQRSKQLIESGKVKV 211
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
NWT + L DIVSV G GRI+I + T K
Sbjct: 212 NWTEALRPDFVLDLLDIVSVRGFGRIQIQGLEGTTK 247
>gi|42518903|ref|NP_964833.1| hypothetical protein LJ0978 [Lactobacillus johnsonii NCC 533]
gi|417837781|ref|ZP_12484019.1| hypothetical protein, contains S4-like RNA binding domain
containing protein [Lactobacillus johnsonii pf01]
gi|41583189|gb|AAS08799.1| hypothetical protein LJ_0978 [Lactobacillus johnsonii NCC 533]
gi|338761324|gb|EGP12593.1| hypothetical protein, contains S4-like RNA binding domain
containing protein [Lactobacillus johnsonii pf01]
Length = 265
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 5/227 (2%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADV-KAVAQGGYPQAERCR-LSVGHPEALTSDPDI 65
+ E + +DFL P +E + E + + + GG+ AE+ R L E D
Sbjct: 34 KNEPILTDFLNP---REQYIFREIVGGYAQLYSFGGFSNAEKKRMLLCDWSEGYKPDEFN 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
++ L I + +H LG + GI + GDII QF + EL DY +
Sbjct: 91 ISLLEIAYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGNWQFFIKAELKDYFLEE 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
++++G V + +PL + + ++ ++ SLR+DA+ SA LSRS++ +I G
Sbjct: 151 IDRIGRTKVKLSELPLSKVLVQEDDSEEMTSVAISLRLDAVISAITNLSRSQVKKIIEAG 210
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+V++NW VT++ + D++S+ GR +I + +T+KGK +E+
Sbjct: 211 EVKLNWHLVTQSNIIISVQDMLSIRHYGRYEIINLATTKKGKKRLEI 257
>gi|154483518|ref|ZP_02025966.1| hypothetical protein EUBVEN_01222 [Eubacterium ventriosum ATCC
27560]
gi|149735428|gb|EDM51314.1| S4 domain protein [Eubacterium ventriosum ATCC 27560]
Length = 251
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 15/244 (6%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A + +R ++DFL + +L V GG AER R++V PE +
Sbjct: 15 LANSSYNRNIYTYTDFLNLNEISILNSYKNQLPPVNVELAGGNDYAER-RIAVFSPEDIY 73
Query: 61 SDPDIVAAL----SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 116
D+ L I ++ SH D LG+IL GI R KIGDI L+ + A +
Sbjct: 74 YTQDLPIKLIEIAPINSHYA-DKLSHRDVLGAILNLGIVRNKIGDIFLKDNQ-AYVYCID 131
Query: 117 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKL 173
+++ Y+ +L+K+ + V CT + A+ P FK I+ +++R+D+L + F
Sbjct: 132 DISGYIAENLKKIKHTIVKCTVKYMEAVNITP----EFKIIKGTISNIRLDSLIATAFGT 187
Query: 174 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGKFAVEL 232
SRS +++ I +G V VN VT NG + DI+SV GKGR I G++ T+KG+ + +
Sbjct: 188 SRSSIISFIESGKVFVNGKMVTSNGHQPKPDDIISVRGKGRFIFEGQLGVTKKGRNLISI 247
Query: 233 IQYL 236
Y+
Sbjct: 248 KLYI 251
>gi|430826927|ref|ZP_19445095.1| S4 domain-containing protein [Enterococcus faecium E0164]
gi|430444473|gb|ELA54311.1| S4 domain-containing protein [Enterococcus faecium E0164]
Length = 260
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 19/226 (8%)
Query: 15 DFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAA 68
+FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 37 EFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVKEDFE-TAL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ + K
Sbjct: 92 YEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVAAQVTK 150
Query: 129 VGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI G
Sbjct: 151 IGKVAVRLE--PIKYTEMIMPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEAG 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
V+VNWT T+ L DI+SV G GR++I E+ T+K K+ V
Sbjct: 208 KVKVNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253
>gi|191638281|ref|YP_001987447.1| RNA-binding protein [Lactobacillus casei BL23]
gi|385819986|ref|YP_005856373.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
LC2W]
gi|385823181|ref|YP_005859523.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
BD-II]
gi|409997144|ref|YP_006751545.1| RNA-binding protein ylmH [Lactobacillus casei W56]
gi|190712583|emb|CAQ66589.1| YlmH (RNA-binding protein) [Lactobacillus casei BL23]
gi|327382313|gb|AEA53789.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
LC2W]
gi|327385508|gb|AEA56982.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
BD-II]
gi|406358156|emb|CCK22426.1| Putative RNA-binding protein ylmH [Lactobacillus casei W56]
Length = 259
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 14/229 (6%)
Query: 9 REVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL--SVGHPEALTSDPD 64
R VL +DF P ++ S+++ + D+K V GGYP+AER R+ + + A +D D
Sbjct: 31 RPVL-TDFTDPRQRLIATSLVSADD--DIKLVHFGGYPRAERQRIIFAPNYFSATAADFD 87
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
I L I F H G++L G+ R+ GDII G+ QF V + D++ +
Sbjct: 88 I-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW-QFFVAAHMQDWVTS 145
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALASAGFKLSRSKLVNLI 182
+++K+G V V T PL +Y P + ++LR+D + + GF +SR + LI
Sbjct: 146 NVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVAHGFNISRQRAKTLI 203
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
G VR+N+ + T DI+SV G GR+++ EI ++KGK V
Sbjct: 204 QGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGKLRV 252
>gi|227550465|ref|ZP_03980514.1| ribosomal protein S4e [Enterococcus faecium TX1330]
gi|257888493|ref|ZP_05668146.1| RNA binding protein S4 [Enterococcus faecium 1,141,733]
gi|257897132|ref|ZP_05676785.1| RNA binding protein S4 [Enterococcus faecium Com12]
gi|293377355|ref|ZP_06623559.1| S4 domain protein [Enterococcus faecium PC4.1]
gi|424763055|ref|ZP_18190534.1| S4 domain protein [Enterococcus faecium TX1337RF]
gi|431031532|ref|ZP_19490706.1| S4 domain-containing protein [Enterococcus faecium E1590]
gi|431751286|ref|ZP_19539977.1| S4 domain-containing protein [Enterococcus faecium E2620]
gi|431758414|ref|ZP_19547041.1| S4 domain-containing protein [Enterococcus faecium E3083]
gi|431763887|ref|ZP_19552435.1| S4 domain-containing protein [Enterococcus faecium E3548]
gi|227180366|gb|EEI61338.1| ribosomal protein S4e [Enterococcus faecium TX1330]
gi|257824547|gb|EEV51479.1| RNA binding protein S4 [Enterococcus faecium 1,141,733]
gi|257833697|gb|EEV60118.1| RNA binding protein S4 [Enterococcus faecium Com12]
gi|292644047|gb|EFF62153.1| S4 domain protein [Enterococcus faecium PC4.1]
gi|402423522|gb|EJV55735.1| S4 domain protein [Enterococcus faecium TX1337RF]
gi|430564942|gb|ELB04117.1| S4 domain-containing protein [Enterococcus faecium E1590]
gi|430615726|gb|ELB52669.1| S4 domain-containing protein [Enterococcus faecium E2620]
gi|430617472|gb|ELB54345.1| S4 domain-containing protein [Enterococcus faecium E3083]
gi|430621711|gb|ELB58463.1| S4 domain-containing protein [Enterococcus faecium E3548]
Length = 260
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 19/227 (8%)
Query: 14 SDFLTPPVLKESMMALEKL----ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVA 67
++FL P ++S + LE L +D++ + GGY QAER C + + E + D + A
Sbjct: 36 TEFLDP---RQSYI-LETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TA 90
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
I F SHG LG+++GTGI R GDII G++ Q + E+ ++ +
Sbjct: 91 LYEIHYPSKFASLSHGKILGTLVGTGIKRSYFGDIISDGDRW-QVFIANEVDHFVAAQVT 149
Query: 128 KVGNVSVSCTRIPLLALEYEPPR---TKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
K+G V+V P+ E P+ T+ T+ +S+R+D++ S + +SR + LI
Sbjct: 150 KIGKVAVRLE--PIKYTEMILPKDSWTQERGTV-SSMRLDSVISEIYNISRQRSKQLIEA 206
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
G V+VNWT T+ L DI+SV G GR++I E+ T+K K+ V
Sbjct: 207 GKVKVNWTENTRPDFVLELLDIISVRGYGRVQIQELEGKTKKEKYRV 253
>gi|321315306|ref|YP_004207593.1| shape determination protein [Bacillus subtilis BSn5]
gi|449094234|ref|YP_007426725.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis XF-1]
gi|320021580|gb|ADV96566.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis BSn5]
gi|449028149|gb|AGE63388.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis XF-1]
Length = 257
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 12/223 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 68
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE +T SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILYPEYITPEESDFEL-QA 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
++ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETAVQLIVSADTADFVAAQLTQ 148
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
G +VS +I L L + +SLR+DA+ ++ + SR K L+ NG V+
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
VNW V + GD++S+ G GR + +I T+K K+ V
Sbjct: 209 VNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251
>gi|152976258|ref|YP_001375775.1| RNA-binding S4 domain-containing protein [Bacillus cytotoxicus NVH
391-98]
gi|152025010|gb|ABS22780.1| RNA-binding S4 domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 257
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 7/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--ALT 60
R +V +DFL P + + + DV G P+AER R ++ +P+ AL
Sbjct: 23 RAVEEYHQVKLTDFLDPRQQQIVTTIVGQQGDVSLQFNGAAPKAERKR-ALIYPDYLALN 81
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+++ G+ REK GDI +Q E Q +V E+
Sbjct: 82 EEEFQVEVLEIDYPSKFYTLEHRQILGALMSLGLKREKYGDIFIQ-ENRVQIVVAKEVVS 140
Query: 121 YLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G VS + L+ + + F T+ +SLR+D + + LSR K+
Sbjct: 141 YIEMNLQSIGKTKVSLFSVSAENVLQLQDEWREQFGTV-SSLRLDVVLAEILHLSRQKVQ 199
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW V + GDI+SV G GR K+ ++ T+K K+ V
Sbjct: 200 PLIKNGLVKVNWKVVDQTSYECLPGDILSVRGHGRSKLFSVDGRTKKDKWRV 251
>gi|384175283|ref|YP_005556668.1| S4 domain protein [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349594507|gb|AEP90694.1| S4 domain protein [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 257
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 12/223 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 68
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE +T SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYNRAERKR-AILYPEYITPEESDFEL-QA 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
++ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETAVQLIVSADTADFVAAQLTQ 148
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
G +VS +I L L + +SLR+DA+ ++ + SR K L+ NG V+
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAIDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
VNW V + GD++S+ G GR + +I T+K K+ V
Sbjct: 209 VNWKVVEDPSYIVAEGDMLSIRGFGRCSLSKIEGKTKKDKWRV 251
>gi|429727341|ref|ZP_19262115.1| S4 domain protein [Peptostreptococcus anaerobius VPI 4330]
gi|429152793|gb|EKX95603.1| S4 domain protein [Peptostreptococcus anaerobius VPI 4330]
Length = 260
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 8/218 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
++FL P +K ++ L D+K +GGY A R + + S+ + ++G
Sbjct: 38 TEFLNPYEVKNAVAILNTEPDLKYKLEGGYDGAIRSVMLISQYYCDLSEESSIRCFQVSG 97
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
NF F+ SH D+LGSILG GI REK+GDI++ E Q +V ++ DY++ +LE+V
Sbjct: 98 NFKFKSVSHRDYLGSILGLGIKREKLGDILVH-EDYCQIIVSSDMGDYVLYNLERVARNR 156
Query: 134 VSCTRIPLLALEYEPPRTKSF--KTIE-ASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V+ I + + P F K I ASLR+D + + F LSR I V V+
Sbjct: 157 VTVKEIGISDI---IPVEDEFDIKNISVASLRLDGIIAGVFNLSRQDASKFIGAEYVSVD 213
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 227
+ + + ++SV G+ + EI ++KGK
Sbjct: 214 YEKIDNPSKQVEEKSVISVRKCGKFILDEIGGVSKKGK 251
>gi|414083300|ref|YP_006992008.1| S4 domain-containing protein [Carnobacterium maltaromaticum LMA28]
gi|412996884|emb|CCO10693.1| S4 domain protein [Carnobacterium maltaromaticum LMA28]
Length = 259
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 12/225 (5%)
Query: 14 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPD--IVAA 68
+DFL P M +E L D+K GGY AER R+ + P+ T + +
Sbjct: 36 TDFLDP----RQMYIVESLVGKRDLKLYYFGGYEAAERKRVFIC-PDYYTPTQEEFKIDI 90
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
I F SH LG+++ G+ RE GDI+ GE+ QF V + +Y+ ++K
Sbjct: 91 CEIRYPTKFAKLSHSKILGTLMSVGVKREYFGDIVFDGERW-QFFVDVGMKNYVENQVDK 149
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
+GNVSV + + +S+R+DA+ ++ FK+SR + LI G V+
Sbjct: 150 IGNVSVRIETRDYTEIITPIDDWTLVQDTVSSMRLDAIIASIFKISRQRAKQLIEAGKVK 209
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
+NW + L DIVSV G GRI+I EI T+K K+ ++
Sbjct: 210 LNWAEQLRPDFELGLLDIVSVRGYGRIQIKEIEGKTKKDKWRIQF 254
>gi|430755976|ref|YP_007209756.1| hypothetical protein A7A1_0484 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430020496|gb|AGA21102.1| Hypothetical protein YlmH [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 257
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 12/223 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 68
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE +T SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYNRAERKR-AILYPEYITPEESDFEL-QA 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
++ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETAVQLIVSADTADFVAAQLTQ 148
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
G +VS +I L L + +SLR+DA+ ++ + SR K L+ NG V+
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
VNW V + GD++S+ G GR + +I T+K K+ V
Sbjct: 209 VNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251
>gi|417989538|ref|ZP_12630042.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
A2-362]
gi|410537925|gb|EKQ12487.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
A2-362]
Length = 259
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 14/229 (6%)
Query: 9 REVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL--SVGHPEALTSDPD 64
R VL +DF P ++ S+++ + D+K V GGYP AER R+ + + A D D
Sbjct: 31 RPVL-TDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRIIFAPSYFSATADDFD 87
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
I L I F H G++L G+ R+ GDII G+ QF V + D++ +
Sbjct: 88 I-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW-QFFVAAHMQDWVTS 145
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALASAGFKLSRSKLVNLI 182
+++K+G V V T PL +Y P + ++LR+D + + GF +SR + LI
Sbjct: 146 NVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVAHGFNISRQRAKTLI 203
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
G VR+N+ + T DI+SV G GR+++ EI ++KGK V
Sbjct: 204 QGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGKLRV 252
>gi|334882317|emb|CCB83314.1| putative cell division protein [Lactobacillus pentosus MP-10]
gi|339639144|emb|CCC18372.1| putative cell division protein [Lactobacillus pentosus IG1]
Length = 261
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 14/235 (5%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD 64
A R +L + FL P + + +L DV+ A GG+ AE R+ P D
Sbjct: 28 ADQYRPIL-TAFLNPRQVYIAQTLANQLDDVRMRAYGGFEGAELQRILFYPPYYEPEAAD 86
Query: 65 I-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 123
+ +I F HG LG++ G+ R+ GDII GE QF+ E+ADY
Sbjct: 87 FQITLFNIVYPVKFATLKHGQILGTLANAGVERDVFGDIITDGEHW-QFVCESEMADYFN 145
Query: 124 TSLEKVGNVSVSCTRIP---LLALE--YEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
+++ G V T + ++A E +EP T +SLR D++ A F LSR
Sbjct: 146 DQIDRFGKTKVHLTAVAGSEVIAREDDWEP-----VTTTVSSLRADSIIKAAFNLSRHHA 200
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
LI G VR+NW + K L D++SV+ GR+++ EI+ T+K + + L
Sbjct: 201 KELIEGGKVRLNWAELPKADYELALLDMLSVNHYGRVRLAEISGETKKARLRITL 255
>gi|229174564|ref|ZP_04302094.1| RNA-binding S4 domain protein [Bacillus cereus MM3]
gi|228608869|gb|EEK66161.1| RNA-binding S4 domain protein [Bacillus cereus MM3]
Length = 241
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKR-ALIYPDYLVVN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 125 YIEMNLQSIGKVKVSLSPVQGEKILQMQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|350265853|ref|YP_004877160.1| S4 domain-containing protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349598740|gb|AEP86528.1| S4 domain protein [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 257
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 12/223 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 68
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE +T SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILYPEYITPEESDFEL-QA 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
++ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FNVRYAEKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETSVQLIVSADTADFVAAQLTQ 148
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
G +VS +I L L + +SLR+DA+ ++ + SR K L+ NG V+
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
VNW V + GD++S+ G GR + +I T+K K+ V
Sbjct: 209 VNWKVVEDPSYMVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251
>gi|254556999|ref|YP_003063416.1| cell division protein () [Lactobacillus plantarum JDM1]
gi|300768837|ref|ZP_07078731.1| S4 domain-containing protein YlmH [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308180991|ref|YP_003925119.1| cell division protein () [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380032932|ref|YP_004889923.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum WCFS1]
gi|418275728|ref|ZP_12891051.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum subsp. plantarum NC8]
gi|448821702|ref|YP_007414864.1| Cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum ZJ316]
gi|254045926|gb|ACT62719.1| cell division protein (putative) [Lactobacillus plantarum JDM1]
gi|300493570|gb|EFK28744.1| S4 domain-containing protein YlmH [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308046482|gb|ADN99025.1| cell division protein (putative) [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342242175|emb|CCC79409.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum WCFS1]
gi|376009279|gb|EHS82608.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum subsp. plantarum NC8]
gi|448275199|gb|AGE39718.1| Cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum ZJ316]
Length = 261
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 9/235 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
R+ + + + + FL P + + + +L DV+ A GG+ AE R+ + +P + +
Sbjct: 25 RQVADQYRPILTAFLNPRQIYIAQTLVNQLDDVRMRASGGFEGAELQRI-LFYP--VYYE 81
Query: 63 PDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
P++ + +I F HG LG++ G+ R+ GDI+ G QF+ E+
Sbjct: 82 PEVADFQITLFNIVYPVKFATLKHGQILGTLANAGVERDVFGDIVTDGTTW-QFVCETEM 140
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
A Y +++ G V T +PL A+ ++ T +SLR D++ A F LSR
Sbjct: 141 ASYFEEQIDRFGKTKVHLTAVPLSAVITPEDDWEAVTTTVSSLRADSIIKAAFNLSRHHA 200
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
LI VR+NW + K L D++SV+ GR+++ EI+ T+K + + L
Sbjct: 201 KELIEGAKVRLNWADLPKADYELALLDMLSVNHYGRVRLAEISGETKKARLRITL 255
>gi|392531408|ref|ZP_10278545.1| cell shape determination protein [Carnobacterium maltaromaticum
ATCC 35586]
Length = 259
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 12/225 (5%)
Query: 14 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPD--IVAA 68
+DFL P M +E L D+K GGY AER R+ + P+ T + +
Sbjct: 36 TDFLDP----RQMYIVETLVGKRDLKLYYFGGYEAAERKRVFIC-PDYYTPTQEEFKIDI 90
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
I F SH LG+++ G+ RE GDI+ GE+ QF V + +Y+ ++K
Sbjct: 91 CEIRYPTKFAKLSHSKILGTLMSVGVKREYFGDIVFDGERW-QFFVDVGMKNYVENQVDK 149
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
+GNVSV + + +S+R+DA+ ++ FK+SR + LI G V+
Sbjct: 150 IGNVSVRIETRDYTEIITPIDDWTLVQDTVSSMRLDAIIASIFKISRQRAKQLIEAGKVK 209
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
+NW + L DIVSV G GRI+I EI T+K K+ ++
Sbjct: 210 LNWAEQLRPDFELGLLDIVSVRGYGRIQIKEIEGKTKKDKWRIQF 254
>gi|325571367|ref|ZP_08146867.1| S4 domain-containing protein YlmH [Enterococcus casseliflavus ATCC
12755]
gi|420262036|ref|ZP_14764679.1| S4 domain-containing protein YlmH [Enterococcus sp. C1]
gi|325155843|gb|EGC68039.1| S4 domain-containing protein YlmH [Enterococcus casseliflavus ATCC
12755]
gi|394771058|gb|EJF50842.1| S4 domain-containing protein YlmH [Enterococcus sp. C1]
Length = 260
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 8/216 (3%)
Query: 14 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAAL 69
+DFL P + ES+ + + D+ GGY AER C + + E T + D+
Sbjct: 36 TDFLDPRQAYILESL--IRQSTDLSFRFFGGYEAAERRRCLIYPDYYEPTTDEFDM-TLF 92
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+I F SHG LG+++GTG+ RE GDI+ GE Q V E++ ++ ++K+
Sbjct: 93 TIQYPKKFTVLSHGKVLGTLMGTGVKREYFGDILSDGEIW-QVFVATEVSHFIQLQVDKI 151
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
GNVSV L + +SLR+D + SA + +SR + LI +G V+V
Sbjct: 152 GNVSVRLEETKYTDLIVPKDGWTEERETVSSLRLDTVISAVYNISRQRSKQLIESGKVKV 211
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
NWT + L DI+SV G GRI+I + T K
Sbjct: 212 NWTEALRPDFVLDLLDIISVRGFGRIQIQGLEGTTK 247
>gi|423457918|ref|ZP_17434715.1| hypothetical protein IEI_01058 [Bacillus cereus BAG5X2-1]
gi|401148302|gb|EJQ55795.1| hypothetical protein IEI_01058 [Bacillus cereus BAG5X2-1]
Length = 255
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKR-ALIYPDYLVVN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSPVQGEKILQMQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|336434971|ref|ZP_08614689.1| hypothetical protein HMPREF0988_00274 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336001864|gb|EGN31991.1| hypothetical protein HMPREF0988_00274 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 259
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 124/253 (49%), Gaps = 25/253 (9%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRLSVGHP 56
++R A R + +SDFL P + L L +Q GGY AER ++ P
Sbjct: 15 LSRLAYHRDIITYSDFLNP----NELHILHSLPKDSLYSQYRVFGGYELAERQMVAFL-P 69
Query: 57 EALTSD---------PDIVAALSIT---GNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 104
+AL+ PD + L I + + +H D+LG++L GI R K GDI++
Sbjct: 70 DALSLRTENLQELFFPDEMCVLRIEPLHKKYA-EELTHRDYLGAMLNLGIDRSKTGDILV 128
Query: 105 QGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVD 164
E GA V P++ ++L L ++ + +V T Y PR + + AS+R+D
Sbjct: 129 -NESGALVFVRPQMKEFLREELTRIRHTTVLVTEEQPETFHY-TPRFEEIRGTVASIRLD 186
Query: 165 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINST 223
+L S F SR+KL LI V VN VT NG + DI+SV G G+ + I E+ T
Sbjct: 187 SLLSLAFGSSRNKLSGLIEGAKVFVNGKLVTSNGYQVHENDIISVRGMGKFRFISELAVT 246
Query: 224 RKGKFAVELIQYL 236
+K + +V + +Y+
Sbjct: 247 KKKRISVLIHKYI 259
>gi|241895685|ref|ZP_04782981.1| ribosomal protein S4e [Weissella paramesenteroides ATCC 33313]
gi|241871052|gb|EER74803.1| ribosomal protein S4e [Weissella paramesenteroides ATCC 33313]
Length = 261
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 4/222 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSI 71
++FL P + + + D+K GGY AE RL + + E + D D++ + I
Sbjct: 36 TNFLNPREIYILKTLVNQQDDLKVFQYGGYQNAENQRLLIAPNYYEPIQDDFDLMV-IQI 94
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H LG+ + GIAR+ IGDII + F+ + +++ L+ +G
Sbjct: 95 KYPEKFATLHHSTILGTFMHNGIARQSIGDIIKGEAETWYFVATKAIGTFILRHLDHIGK 154
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V + + T +SLR+D++ + G+ +SR+ +I + VRVNW
Sbjct: 155 AKVRFEEVMANQIVVVDDEWTIINTTVSSLRLDSIVANGYNISRNHAKQMIEHDLVRVNW 214
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
T + K L D+VSV GR+KI E+N T+K K+ + +
Sbjct: 215 TDINKPDYVLAVNDLVSVRKYGRLKIDELNGLTKKDKWRITM 256
>gi|194014420|ref|ZP_03053037.1| RNA-binding protein [Bacillus pumilus ATCC 7061]
gi|194013446|gb|EDW23011.1| RNA-binding protein [Bacillus pumilus ATCC 7061]
Length = 258
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 7/221 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL---TSDPDIVAALS 70
+DFL P + ++ ++ + GGY AER R + +PE L T D ++ +
Sbjct: 35 TDFLDPREQFITQSVIQHADELGIMFFGGYEGAERKRALI-YPEYLQPATQDAEL-SYFQ 92
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F H LGS++GTG+ R+K GD++ E+ QF+ ++AD++ L VG
Sbjct: 93 VNYAKKFISLEHPKLLGSLIGTGLKRQKFGDLLF-SEEDVQFICTSDVADFVRAQLTHVG 151
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
SVS I L+ +T + +SLR+DA+ +A + SR K L+ NG V+VN
Sbjct: 152 RASVSLEEITQADLKPVKSKTDIKEDTISSLRLDAVCAAISRQSRQKAQLLVKNGLVKVN 211
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
W T+ GD +SV G GR + I+ T+K KF V
Sbjct: 212 WKVTEDPSFTIGEGDQLSVRGFGRFSLKTIDGKTKKDKFKV 252
>gi|339448178|ref|ZP_08651734.1| cell division protein [Lactobacillus fructivorans KCTC 3543]
Length = 263
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 11/198 (5%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAR 96
GGY AE R + +P+ P++ +A + I F H LGS++G+GI R
Sbjct: 65 GGYKDAEMKR-GIIYPDYF--HPEVKDYRLALVEIEYPEKFASIHHNQVLGSLMGSGIER 121
Query: 97 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-EYEPPRTKSFK 155
+ +GDI+ G++ QF+ E+ YL ++++G V V+ + L + + E SF
Sbjct: 122 KVLGDILTDGDR-FQFICEQEMVGYLTQEVDRIGRVKVNLKEVNLSEMIQGENDWVTSFV 180
Query: 156 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215
T+ S R+D + S GF++SRS +L+ + VR+NW TK ++ D++SV G GRI
Sbjct: 181 TL-PSFRLDVVISIGFRISRSVAKSLVEHEKVRLNWFEFTKPNYEIKVSDMISVRGYGRI 239
Query: 216 K-IGEINSTRKGKFAVEL 232
+ +G ++KGK EL
Sbjct: 240 RVVGYNGHSKKGKLKAEL 257
>gi|228987042|ref|ZP_04147167.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228772636|gb|EEM21077.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 241
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G QAER R ++ +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALIYPDYLVVN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 125 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 184 PLIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|392394894|ref|YP_006431496.1| hypothetical protein Desde_3421 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390525972|gb|AFM01703.1| hypothetical protein Desde_3421 [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 265
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 3/197 (1%)
Query: 40 QGGYPQAERCRLSVGH-PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
+GG+P +ER R +G + L + P + L T H LGS++G G+ RE
Sbjct: 66 EGGFPDSERVRFLIGEDADVLDNIPSEIRTLRATPVDPRGKLEHRQVLGSLIGLGLKREV 125
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 158
+GDI E V +++D+L++ +K G + + +E + K +
Sbjct: 126 VGDIRFT-EHSCLVAVAQDISDFLLSQWDKAGRERIRVEAVEG-DVEVSVEQGKERRITA 183
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218
AS R+DA+AS+GF +SR+ L LI G V+ N V+K ++ GDI+S G GR+++
Sbjct: 184 ASSRIDAVASSGFNVSRTVLQELIQQGKVKRNDLLVSKADMEVKPGDILSCRGYGRMRLI 243
Query: 219 EINSTRKGKFAVELIQY 235
E TRKG+ A +I Y
Sbjct: 244 EFQETRKGRIAWNIILY 260
>gi|309778070|ref|ZP_07673009.1| putative S4 domain protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308914164|gb|EFP59965.1| putative S4 domain protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 40 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
QGGY QAERCRL+ E P + +I+ +FG +H D LG+++ GI REK
Sbjct: 58 QGGYAQAERCRLAFLPWEEDVDIPILHVKANISSSFG--QITHRDVLGALMHLGIEREKT 115
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT-IE 158
GD+I+ + V P++ +YL +L K+ + + + YEP ++KT I
Sbjct: 116 GDLIV-DQNTVHMFVDPDIGNYLCANLTKIRRCKIQLEESDEV-ISYEPD--IAYKTLIV 171
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218
+SLR+D L SA +SR+K I G V+VN + + ++S+ G GR ++
Sbjct: 172 SSLRLDTLVSALSNMSRAKAAACIRAGQVKVNHVVLEQTSHLCDNTCVISIRGHGRFQLK 231
Query: 219 E-INSTRKGKFAVELIQY 235
E + T+KG +E+ Y
Sbjct: 232 EVVKETKKGNLVIEVGMY 249
>gi|89101248|ref|ZP_01174071.1| hypothetical protein B14911_02005 [Bacillus sp. NRRL B-14911]
gi|89084041|gb|EAR63219.1| hypothetical protein B14911_02005 [Bacillus sp. NRRL B-14911]
Length = 257
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 7/221 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
+DFL P + M + + + VK GG ER R ++ +P+ T D + +
Sbjct: 34 TDFLDPREQQIVKMIVGEHSGVKLRLFGGTEGTERKR-ALLYPKYFTPDEEEFSITLFEI 92
Query: 74 NF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
N+ F H LGS++ G+ R K GDI +Q E+ AQF V E+ DY+ LE +G
Sbjct: 93 NYPSKFVSIEHPQILGSLMALGLKRGKFGDITVQDER-AQFFVSREIEDYVSMQLESIGK 151
Query: 132 VSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
SV+ ++PL A+ +S ++ +SLR+DA+ SA + +SR K + G V+VN
Sbjct: 152 ASVTLKKLPLEKAITAAGAWEESSASV-SSLRLDAVISAIYNISRQKSQLFVQQGLVKVN 210
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
W V D++SV GKGR KI E+ T+K K+ +
Sbjct: 211 WGQVEDPSFVCGEADVLSVRGKGRSKIIEVEGKTKKDKWRI 251
>gi|260587701|ref|ZP_05853614.1| RNA-binding S4 [Blautia hansenii DSM 20583]
gi|331084008|ref|ZP_08333115.1| hypothetical protein HMPREF0992_02039 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541966|gb|EEX22535.1| RNA-binding S4 [Blautia hansenii DSM 20583]
gi|330402370|gb|EGG81940.1| hypothetical protein HMPREF0992_02039 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 130/241 (53%), Gaps = 11/241 (4%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLAD--VKAVAQGGYPQAERCRLSVGHPEA 58
+++++ R + +SDFL + +++++ +D V+ + GGY AER +++ +A
Sbjct: 14 LSKKSYYRGILTYSDFL--DLNEQNILHSLSFSDTGVQVLLFGGYETAER-QMAAFVSDA 70
Query: 59 LTSDPDI-VAALSITG-NFGFQPC-SHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 115
D +A + I+ N F +H D+LGSIL GI R KIGDI+++ E GA
Sbjct: 71 FCCKEDYPIACIKISPLNRKFSDTLTHRDYLGSILNLGIERCKIGDILVE-EDGAFVFCH 129
Query: 116 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 175
+ D+LI + ++ + V RI P R + T+ AS R+D++ F+ SR
Sbjct: 130 TSMVDFLIDEICRIKHTPVKAERITEENQLPTPKREEISGTV-ASPRLDSVIGLAFRTSR 188
Query: 176 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQ 234
S +++ I +G V +N +V NG L+ GDIVSV GKG+ + + S T+K + V L +
Sbjct: 189 SSMISYIESGKVFINGKSVVSNGYVLKEGDIVSVRGKGKFQFHSVTSKTKKNRSHVILYK 248
Query: 235 Y 235
Y
Sbjct: 249 Y 249
>gi|423615839|ref|ZP_17591673.1| hypothetical protein IIO_01165 [Bacillus cereus VD115]
gi|401260376|gb|EJR66549.1| hypothetical protein IIO_01165 [Bacillus cereus VD115]
Length = 255
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 116/233 (49%), Gaps = 10/233 (4%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFDGATPYAER-RRALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHWQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRI--PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
Y+ +L+ +G V VS + + + +E KS +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQAIGKVKVSLSAVQGEQILQTHETWGEKSGTV--SSLRLDVMLAEMLHISRQKV 196
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 197 QPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|30021986|ref|NP_833617.1| RNA binding protein [Bacillus cereus ATCC 14579]
gi|296504392|ref|YP_003666092.1| RNA binding protein [Bacillus thuringiensis BMB171]
gi|423585693|ref|ZP_17561780.1| hypothetical protein IIE_01105 [Bacillus cereus VD045]
gi|423628992|ref|ZP_17604741.1| hypothetical protein IK5_01844 [Bacillus cereus VD154]
gi|423641024|ref|ZP_17616642.1| hypothetical protein IK9_00969 [Bacillus cereus VD166]
gi|423656758|ref|ZP_17632057.1| hypothetical protein IKG_03746 [Bacillus cereus VD200]
gi|29897542|gb|AAP10818.1| RNA binding protein [Bacillus cereus ATCC 14579]
gi|296325444|gb|ADH08372.1| RNA binding protein [Bacillus thuringiensis BMB171]
gi|401233039|gb|EJR39535.1| hypothetical protein IIE_01105 [Bacillus cereus VD045]
gi|401268537|gb|EJR74585.1| hypothetical protein IK5_01844 [Bacillus cereus VD154]
gi|401280085|gb|EJR86007.1| hypothetical protein IK9_00969 [Bacillus cereus VD166]
gi|401290499|gb|EJR96193.1| hypothetical protein IKG_03746 [Bacillus cereus VD200]
Length = 255
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + L+ + + T+ +SLR+D + + LSR K+
Sbjct: 139 YIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSGTV-SSLRLDVMLAEMLHLSRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|260584171|ref|ZP_05851919.1| YlmH protein [Granulicatella elegans ATCC 700633]
gi|260158797|gb|EEW93865.1| YlmH protein [Granulicatella elegans ATCC 700633]
Length = 262
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 5/202 (2%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+K +GGY AER R + +P+ A T++ V + I F SHG LGS++G
Sbjct: 56 DIKFQFEGGYIAAERKRCMI-YPDFYAPTTEEFDVELIEIHYPIKFSSISHGQILGSLVG 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDII G + Q L+ ++ YL + +KVG +S+ L
Sbjct: 115 LGIDRDQLGDIISDGIRW-QLLLTKQMLPYLKQNFQKVGKISIRIDEKEYTELILPIDHW 173
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
I +SLR+D L ++ F +SR + L+ + V+VNW + + DI+S+ G
Sbjct: 174 TYTTAIVSSLRLDTLIASIFHISRQRSKELVESNKVKVNWAEEIRPDFMIELLDIISIRG 233
Query: 212 KGRIKIGEIN-STRKGKFAVEL 232
GRI+I I T+K K +E+
Sbjct: 234 YGRIQIKNIEGRTKKDKIKLEI 255
>gi|365159325|ref|ZP_09355506.1| hypothetical protein HMPREF1014_00969 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412299|ref|ZP_17389419.1| hypothetical protein IE1_01603 [Bacillus cereus BAG3O-2]
gi|423426032|ref|ZP_17403063.1| hypothetical protein IE5_03721 [Bacillus cereus BAG3X2-2]
gi|423431916|ref|ZP_17408920.1| hypothetical protein IE7_03732 [Bacillus cereus BAG4O-1]
gi|423503426|ref|ZP_17480018.1| hypothetical protein IG1_00992 [Bacillus cereus HD73]
gi|363625323|gb|EHL76364.1| hypothetical protein HMPREF1014_00969 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104367|gb|EJQ12344.1| hypothetical protein IE1_01603 [Bacillus cereus BAG3O-2]
gi|401110779|gb|EJQ18678.1| hypothetical protein IE5_03721 [Bacillus cereus BAG3X2-2]
gi|401116672|gb|EJQ24510.1| hypothetical protein IE7_03732 [Bacillus cereus BAG4O-1]
gi|402459647|gb|EJV91384.1| hypothetical protein IG1_00992 [Bacillus cereus HD73]
Length = 255
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 117/234 (50%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + +L + +E KS +SLR+D + + LSR K
Sbjct: 139 YIEMNLQSIGKVKVSLASVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 195
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 196 VQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|239631634|ref|ZP_04674665.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066330|ref|YP_003788353.1| cell division protein, S4-like domain [Lactobacillus casei str.
Zhang]
gi|417980576|ref|ZP_12621256.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
12A]
gi|239526099|gb|EEQ65100.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300438737|gb|ADK18503.1| Cell division protein, S4-like domain [Lactobacillus casei str.
Zhang]
gi|410524899|gb|EKP99806.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
12A]
Length = 259
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 104/202 (51%), Gaps = 9/202 (4%)
Query: 34 DVKAVAQGGYPQAERCRL--SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+K V GGYP+AER R+ + + A D DI L I F H G++L
Sbjct: 55 DIKLVHFGGYPRAERQRIIFAPSYFSATAVDFDI-RLLQIIYPEKFAELHHSTVQGTLLN 113
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
G+ R+ GDII G+ QF V + D++ ++++K+G V V T PL +Y P
Sbjct: 114 AGLDRDVFGDIITDGDIW-QFFVAAHMQDWVTSNVDKIGRVGVHFTEHPLA--DYVTPEN 170
Query: 152 --KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 209
+ ++LR+D + + GF +SR + LI G VR+N+ + T DI+SV
Sbjct: 171 DWEPLNFSVSALRLDTVVAHGFNISRQRAKTLIQGGKVRLNFGESDAPDAEIATSDIISV 230
Query: 210 SGKGRIKIGEI-NSTRKGKFAV 230
G GR+++ EI ++KGK V
Sbjct: 231 RGFGRLRLDEILGESKKGKLRV 252
>gi|206970953|ref|ZP_03231904.1| S4 domain protein [Bacillus cereus AH1134]
gi|218235237|ref|YP_002368697.1| S4 domain-containing protein [Bacillus cereus B4264]
gi|228960115|ref|ZP_04121779.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229047582|ref|ZP_04193172.1| RNA-binding S4 domain protein [Bacillus cereus AH676]
gi|229111367|ref|ZP_04240920.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-15]
gi|229129175|ref|ZP_04258148.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-Cer4]
gi|229146469|ref|ZP_04274840.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST24]
gi|229152095|ref|ZP_04280290.1| RNA-binding S4 domain protein [Bacillus cereus m1550]
gi|206733725|gb|EDZ50896.1| S4 domain protein [Bacillus cereus AH1134]
gi|218163194|gb|ACK63186.1| S4 domain protein [Bacillus cereus B4264]
gi|228631444|gb|EEK88078.1| RNA-binding S4 domain protein [Bacillus cereus m1550]
gi|228637102|gb|EEK93561.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST24]
gi|228654412|gb|EEL10277.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-Cer4]
gi|228672143|gb|EEL27434.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-15]
gi|228723829|gb|EEL75184.1| RNA-binding S4 domain protein [Bacillus cereus AH676]
gi|228799631|gb|EEM46584.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 241
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 124
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + L+ + + T+ +SLR+D + + LSR K+
Sbjct: 125 YIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSGTV-SSLRLDVMLAEMLHLSRQKVQ 183
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|228954174|ref|ZP_04116202.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229071397|ref|ZP_04204619.1| RNA-binding S4 domain protein [Bacillus cereus F65185]
gi|229081150|ref|ZP_04213660.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-2]
gi|229180173|ref|ZP_04307517.1| RNA-binding S4 domain protein [Bacillus cereus 172560W]
gi|449090839|ref|YP_007423280.1| hypothetical protein HD73_4181 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228603382|gb|EEK60859.1| RNA-binding S4 domain protein [Bacillus cereus 172560W]
gi|228702194|gb|EEL54670.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-2]
gi|228711688|gb|EEL63641.1| RNA-binding S4 domain protein [Bacillus cereus F65185]
gi|228805494|gb|EEM52085.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|449024596|gb|AGE79759.1| hypothetical protein HD73_4181 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 241
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 124
Query: 121 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + +L + +E KS +SLR+D + + LSR K
Sbjct: 125 YIEMNLQSIGKVKVSLASVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 181
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
+ I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 182 VQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|384181712|ref|YP_005567474.1| S4 domain-containing protein [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327796|gb|ADY23056.1| S4 domain protein [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 255
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G QAER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALIYPDYLVIN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCT---RIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + R +L ++ E KS +SLR+D + + +SR K
Sbjct: 139 YIEMNLQSIGKVKVSLSPVQREKILQIQ-ETWGEKSGTV--SSLRLDVMLAEMLHISRQK 195
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 196 VQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|423582107|ref|ZP_17558218.1| hypothetical protein IIA_03622 [Bacillus cereus VD014]
gi|423635330|ref|ZP_17610983.1| hypothetical protein IK7_01739 [Bacillus cereus VD156]
gi|401212986|gb|EJR19727.1| hypothetical protein IIA_03622 [Bacillus cereus VD014]
gi|401278081|gb|EJR84017.1| hypothetical protein IK7_01739 [Bacillus cereus VD156]
Length = 255
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 117/234 (50%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + +L + +E KS +SLR+D + + LSR K
Sbjct: 139 YIEMNLQSIGKVKVSLASVQGEKILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 195
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 196 VQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|228922650|ref|ZP_04085950.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837079|gb|EEM82420.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 241
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 124
Query: 121 YLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + +L + +E KS +SLR+D + + LSR K
Sbjct: 125 YIEMNLQSIGKVKVSLASVQGEKILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 181
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
+ I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 182 VQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|291563464|emb|CBL42280.1| Uncharacterized conserved protein, contains S4-like domain
[butyrate-producing bacterium SS3/4]
Length = 251
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 124/241 (51%), Gaps = 11/241 (4%)
Query: 1 MARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGH 55
+A A SR LH+DFLT + ++M A L VK V GG+P +ER C L+ +
Sbjct: 15 LAENAYSRDIPLHTDFLTLAEQTVFQNMSA--TLPPVKFVLSGGFPMSERKVLCFLA-SY 71
Query: 56 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 115
E L + P + + + +H D+LG+I+ GI R IGDI+LQ F V+
Sbjct: 72 EEELYAPPFVCLKIVPANRRFAEELTHRDYLGAIMNLGIERAMIGDIVLQDGNAWAF-VM 130
Query: 116 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSR 175
+++ YL +L + + SV T I E P + +S+R+D++ + +LSR
Sbjct: 131 EKMSRYLAENLTMIRHTSV-VTEITADFSELPEPEMEEISGTVSSVRLDSVIALCGRLSR 189
Query: 176 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQ 234
++ + I + V VN T LR G+I+S+ G G+ + GE N T+KG+ +V + +
Sbjct: 190 TRAASYIEDEKVSVNGAVCTNVSLNLRGGEILSIRGIGKFRFGEPGNLTKKGRTSVVVYR 249
Query: 235 Y 235
Y
Sbjct: 250 Y 250
>gi|16078605|ref|NP_389424.1| hypothetical protein BSU15410 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309415|ref|ZP_03591262.1| hypothetical protein Bsubs1_08521 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313740|ref|ZP_03595545.1| hypothetical protein BsubsN3_08457 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318664|ref|ZP_03599958.1| hypothetical protein BsubsJ_08391 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322937|ref|ZP_03604231.1| hypothetical protein BsubsS_08497 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402775786|ref|YP_006629730.1| shape determination RNA-binding protein [Bacillus subtilis QB928]
gi|418033313|ref|ZP_12671790.1| hypothetical protein BSSC8_27340 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452914017|ref|ZP_21962644.1| S4 domain protein [Bacillus subtilis MB73/2]
gi|81345679|sp|P71020.1|YLMH_BACSU RecName: Full=Putative RNA-binding protein YlmH
gi|1518679|gb|AAB49278.1| orf [Bacillus subtilis subsp. subtilis str. 168]
gi|2633914|emb|CAB13415.1| factor involved in shape determination, RNA-binding fold [Bacillus
subtilis subsp. subtilis str. 168]
gi|351469461|gb|EHA29637.1| hypothetical protein BSSC8_27340 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402480969|gb|AFQ57478.1| Factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis QB928]
gi|407958948|dbj|BAM52188.1| shape determination protein [Synechocystis sp. PCC 6803]
gi|407964525|dbj|BAM57764.1| shape determination protein [Bacillus subtilis BEST7003]
gi|452116437|gb|EME06832.1| S4 domain protein [Bacillus subtilis MB73/2]
Length = 257
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 12/223 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 68
+DFL P +E ++ A+ ADV GGY +AER R ++ PE +T SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILFPEYITPEESDFEL-QA 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
++ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETAVQLIVSADTADFVAAQLTQ 148
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
G +VS +I L L + +SLR+DA+ ++ + SR K L+ NG V+
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
VNW V + GD++S+ G GR + +I T+K K+ V
Sbjct: 209 VNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251
>gi|229192067|ref|ZP_04319036.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 10876]
gi|228591393|gb|EEK49243.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 10876]
Length = 241
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 124
Query: 121 YLITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + +L + +E KS +SLR+D + + LSR K
Sbjct: 125 YIEMNLQSIGKVKVSLASVHGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 181
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
+ I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 182 VQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|229075655|ref|ZP_04208637.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-18]
gi|229098368|ref|ZP_04229313.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-29]
gi|229104461|ref|ZP_04235128.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-28]
gi|229117394|ref|ZP_04246770.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-3]
gi|407706356|ref|YP_006829941.1| cytochrome c oxidase subunit II [Bacillus thuringiensis MC28]
gi|423378250|ref|ZP_17355534.1| hypothetical protein IC9_01603 [Bacillus cereus BAG1O-2]
gi|423441371|ref|ZP_17418277.1| hypothetical protein IEA_01701 [Bacillus cereus BAG4X2-1]
gi|423448403|ref|ZP_17425282.1| hypothetical protein IEC_03011 [Bacillus cereus BAG5O-1]
gi|423464445|ref|ZP_17441213.1| hypothetical protein IEK_01632 [Bacillus cereus BAG6O-1]
gi|423533787|ref|ZP_17510205.1| hypothetical protein IGI_01619 [Bacillus cereus HuB2-9]
gi|423540957|ref|ZP_17517348.1| hypothetical protein IGK_03049 [Bacillus cereus HuB4-10]
gi|423547195|ref|ZP_17523553.1| hypothetical protein IGO_03630 [Bacillus cereus HuB5-5]
gi|423623023|ref|ZP_17598801.1| hypothetical protein IK3_01621 [Bacillus cereus VD148]
gi|228666004|gb|EEL21470.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-3]
gi|228678903|gb|EEL33113.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-28]
gi|228684985|gb|EEL38918.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-29]
gi|228707431|gb|EEL59622.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-18]
gi|401128997|gb|EJQ36680.1| hypothetical protein IEC_03011 [Bacillus cereus BAG5O-1]
gi|401172145|gb|EJQ79366.1| hypothetical protein IGK_03049 [Bacillus cereus HuB4-10]
gi|401178916|gb|EJQ86089.1| hypothetical protein IGO_03630 [Bacillus cereus HuB5-5]
gi|401259796|gb|EJR65970.1| hypothetical protein IK3_01621 [Bacillus cereus VD148]
gi|401636516|gb|EJS54270.1| hypothetical protein IC9_01603 [Bacillus cereus BAG1O-2]
gi|402418032|gb|EJV50332.1| hypothetical protein IEA_01701 [Bacillus cereus BAG4X2-1]
gi|402420712|gb|EJV52983.1| hypothetical protein IEK_01632 [Bacillus cereus BAG6O-1]
gi|402464006|gb|EJV95706.1| hypothetical protein IGI_01619 [Bacillus cereus HuB2-9]
gi|407384041|gb|AFU14542.1| RNA-binding S4 domain protein [Bacillus thuringiensis MC28]
Length = 255
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 116/233 (49%), Gaps = 10/233 (4%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFDGATPYAER-RRALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRI--PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
Y+ +L+ +G V VS + + + +E KS +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQAIGKVKVSLSAVQGEQILQTHETWGEKSGTV--SSLRLDVMLAEMLHISRQKV 196
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 197 QPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|373106343|ref|ZP_09520646.1| hypothetical protein HMPREF9623_00310 [Stomatobaculum longum]
gi|371652718|gb|EHO18126.1| hypothetical protein HMPREF9623_00310 [Stomatobaculum longum]
Length = 253
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 8/241 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
++R+ R HS FLT + + L +A ++ ++ G + AER ++ P L
Sbjct: 16 LSRQCEDRNVPTHSYFLTVEEQRLAAQCLPNVAGIRMISDGVFCDAER-KVLFFLPSYLE 74
Query: 61 SDPD---IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
P+ I L+ +P H DFLG+++G GI RE +GD+++ E AQ + +P
Sbjct: 75 EPPEDELICLELAPRAPKFAEPLGHRDFLGALMGLGIRREMLGDLMVT-ENKAQLVALPS 133
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+ + L +V + + IP AL RT+ ASLR D L +A + LSR++
Sbjct: 134 VKALIERELTEVRHTRIEVLEIPREALSA-VRRTEVRSVNAASLRADVLVAAVWNLSRTR 192
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI--GEINSTRKGKFAVELIQY 235
S G V N T ++ LR GD++S+ GKG+ ++ E STR G+ V++ +
Sbjct: 193 AKEAFSTGKVLRNGTELSNPAEVLRAGDVMSLRGKGKFRLCDAEPRSTRSGRLYVDIAYF 252
Query: 236 L 236
+
Sbjct: 253 V 253
>gi|157692221|ref|YP_001486683.1| hypothetical protein BPUM_1440 [Bacillus pumilus SAFR-032]
gi|157680979|gb|ABV62123.1| hypothetical protein BPUM_1440 [Bacillus pumilus SAFR-032]
Length = 258
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 113/221 (51%), Gaps = 7/221 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL---TSDPDIVAALS 70
+DFL P + ++ ++ + GGY AER R ++ +PE L T D ++ +
Sbjct: 35 TDFLDPREQFITQSVIQHADELGIMFFGGYEGAERKR-ALIYPEYLEPATQDAEL-SYFQ 92
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F H LGS++GTG+ R+K GD++ E+ QF+ ++AD++ L VG
Sbjct: 93 VNYAKKFISLEHPKLLGSLIGTGLKRQKFGDLLF-SEEDVQFICTSDVADFVRAQLTHVG 151
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
SVS I L+ +T + +SLR+DA+ +A + SR K L+ NG V+VN
Sbjct: 152 RASVSLEEITQADLKPVISKTDIKEDTISSLRLDAVCAAISRQSRQKAQLLVKNGLVKVN 211
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
W T+ GD +SV G GR + I+ T+K KF V
Sbjct: 212 WKVTEDPSFTIGEGDQLSVRGFGRFSLKTIDGKTKKDKFKV 252
>gi|427392306|ref|ZP_18886311.1| hypothetical protein HMPREF9698_00117 [Alloiococcus otitis ATCC
51267]
gi|425731573|gb|EKU94389.1| hypothetical protein HMPREF9698_00117 [Alloiococcus otitis ATCC
51267]
Length = 260
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 7/236 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
RR S + FL P + + D++ GG+P AER R S+ +PE L
Sbjct: 22 WVRRVSDTYAPYLTSFLDPRQAYILATIVAQYPDLQVSYWGGHPGAERQR-SLIYPEYLP 80
Query: 61 SDP---DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
+ DI A I F SHG +GSILGTGI R+K+GDII + QF +
Sbjct: 81 THELSYDI-AGFEIDYPHKFNKLSHGQIMGSILGTGIKRDKLGDIISDSGRW-QFFIDQG 138
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
L+D++ +++VG+ V + + + I +SLR+D+ ++ L+RSK
Sbjct: 139 LSDFITIQVDRVGSSPVRLYSLDQTDIIDNQEDWTVDQVIVSSLRLDSFIASCLNLARSK 198
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVEL 232
+L+ V++N+ V + G L D+VSV G GR++ + + T+K K +E+
Sbjct: 199 AKSLVDQDRVKLNFGQVDQAGLVLEEEDMVSVRGFGRLQFLRAVKQTKKDKVLIEV 254
>gi|423649759|ref|ZP_17625329.1| hypothetical protein IKA_03546 [Bacillus cereus VD169]
gi|401283039|gb|EJR88936.1| hypothetical protein IKA_03546 [Bacillus cereus VD169]
Length = 255
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + D+ G P AER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDIAVQFGGATPNAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + L+ + + T+ +SLR+D + + LSR K+
Sbjct: 139 YIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSGTV-SSLRLDVMLAEMLHLSRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|116334045|ref|YP_795572.1| cell division protein [Lactobacillus brevis ATCC 367]
gi|116099392|gb|ABJ64541.1| Cell division protein, S4-like domain [Lactobacillus brevis ATCC
367]
Length = 259
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 107/226 (47%), Gaps = 14/226 (6%)
Query: 14 SDFLTPPVLKESMMA--LEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSDPDIVAAL 69
++FL P ++ +A L + ADV GGY AE R + E + D ++ A L
Sbjct: 36 TNFLNP---RQVYIATTLAQRADVPVRFNGGYAHAEMQRALFYPDYYEPVAKDFEL-AVL 91
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE--LADYLITSLE 127
+ F H LG++LG GI RE +GDI+ G + VV E +ADYL ++
Sbjct: 92 RVDYPVKFATLHHSQILGTLLGAGIEREILGDIL---TDGTTWQVVTEAGMADYLTGQVD 148
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
++G V L + + +SLR+D + GF LSR + LI G V
Sbjct: 149 RIGRVKARLQLADFADLVHPLSEWTAEGATLSSLRLDNIVGTGFHLSRHRAKELIEAGHV 208
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
R+NW K L DIVSV G GRI++ E+ T+K K V L
Sbjct: 209 RLNWAETQKPDYELDVADIVSVRGFGRIRLDEVGGRTKKDKIRVTL 254
>gi|42782990|ref|NP_980237.1| S4 domain-containing protein [Bacillus cereus ATCC 10987]
gi|42738917|gb|AAS42845.1| S4 domain protein [Bacillus cereus ATCC 10987]
Length = 255
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G QAER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALIYPDYLVVN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGHGRSKLFSVEGRTKRDKWRI 249
>gi|227889762|ref|ZP_04007567.1| possible ribosomal protein S4e [Lactobacillus johnsonii ATCC 33200]
gi|227849626|gb|EEJ59712.1| possible ribosomal protein S4e [Lactobacillus johnsonii ATCC 33200]
Length = 265
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 8/225 (3%)
Query: 16 FLTPPVLKESMMALEKLADVKAV---AQ----GGYPQAERCRLSVGH-PEALTSDPDIVA 67
F P+L + + E+ K V AQ GG+ AE+ RL + E D ++
Sbjct: 33 FKNEPILTDFLNPREQYIFRKIVGGYAQLYSFGGFSNAEKKRLLLCEWSEGYKPDEFNIS 92
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I + +H LG + GI + GDII QF V EL DY + ++
Sbjct: 93 LLEIAYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGNWQFFVKAELKDYFLEEID 152
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
++G V + +PL + + ++ ++ SLR+DA+ SA LSRS++ +I G+
Sbjct: 153 RIGRTKVKLSELPLSKVLVQEDDSEEMTSVAISLRLDAVISAITNLSRSQVKKIIEAGEA 212
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
++NW VT++ + D++S+ GR +I + +T+KGK +E+
Sbjct: 213 KLNWHLVTQSNIIISVQDMLSIRHYGRYEIINLATTKKGKKRLEI 257
>gi|306832984|ref|ZP_07466116.1| S4 domain-containing protein YlmH [Streptococcus bovis ATCC 700338]
gi|304424883|gb|EFM28017.1| S4 domain-containing protein YlmH [Streptococcus bovis ATCC 700338]
Length = 263
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 113/232 (48%), Gaps = 9/232 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+ARR + + +DFL P + + + V+ YP AE RL V P+
Sbjct: 25 LARRVEATYAYVLTDFLNPRQVDIARSVIGNRGLHYFVSSDYYP-AEYARLIVA-PDYYE 82
Query: 61 SDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVP 116
+P+ + L + N F +H +G++L GI R IGDI++ E G AQ LV
Sbjct: 83 FNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ESGYAQLLVTQ 140
Query: 117 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 176
+ADY + K+ SVS IPL L ++ I +S+R+D + + KLSRS
Sbjct: 141 NMADYFRADVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIIVSSMRMDKVLATVLKLSRS 200
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGK 227
+ V LI V++N+ V + L+ GD++SV G GR I E T+ GK
Sbjct: 201 QAVQLIETDKVKLNYQIVDRASEMLQVGDLISVRGFGRFSILSENGLTKNGK 252
>gi|398304131|ref|ZP_10507717.1| shape determination protein [Bacillus vallismortis DV1-F-3]
Length = 257
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 12/223 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 68
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE +T SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFFGGYDRAERKR-AILYPEYITPEESDFEL-QA 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
+ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FHVRYAEKFVSVDHRALLGALMGIGLKRQKFGDIVF-SETAVQLIVSADTADFVAAQLTQ 148
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
G +VS +I L L + +SLR+DA+ ++ + SR K L+ NG V+
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
VNW V + GD++S+ G GR + +I T+K K+ V
Sbjct: 209 VNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251
>gi|336113714|ref|YP_004568481.1| RNA-binding S4 domain-containing protein [Bacillus coagulans 2-6]
gi|335367144|gb|AEH53095.1| RNA-binding S4 domain protein [Bacillus coagulans 2-6]
Length = 258
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 109/219 (49%), Gaps = 7/219 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--IVAALSI 71
+DFL P + + V A GGY ++ER R+ + P+ + D D +A +
Sbjct: 35 TDFLDPRMQQIVNTVTGNHGAVSVRAFGGYKESERKRI-LFFPDYFSPDEDDFHLALFEV 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H LGS++ G+ REK GDI++ GE QF ELAD++ ++G
Sbjct: 94 HYPAKFVSFEHKHVLGSLMALGLKREKFGDILI-GEGRIQFFAAAELADFIQMEFRQIGK 152
Query: 132 VSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V+ T++ L A+ + + T+ +SLR+DA+ SA + +SR K LI +G V+VN
Sbjct: 153 TPVTLTKMQLDQAIRQQQHWLEKQATV-SSLRLDAILSAVYNISRQKTRMLIEHGLVKVN 211
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 228
W TV GD S G GR ++ + T+K K+
Sbjct: 212 WKTVEDPSFQCGEGDTFSTRGYGRSRLIRVEGKTKKEKW 250
>gi|227514818|ref|ZP_03944867.1| ribosomal protein S4e [Lactobacillus fermentum ATCC 14931]
gi|227086808|gb|EEI22120.1| ribosomal protein S4e [Lactobacillus fermentum ATCC 14931]
Length = 262
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 95/206 (46%), Gaps = 4/206 (1%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITG 73
FL P + + +VK +G YP AE R + +P T D + L I
Sbjct: 40 FLNPRQRYIMRVIANRQDEVKVAFKGAYPGAEMQR-GLAYPAYYQPTEDDFELQLLEINY 98
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F H +G++L TG+ R GDII E Q +V +L+DYLI + +G
Sbjct: 99 PQKFAELHHRQVMGAVLSTGVERGAFGDIIASDEHW-QIIVQRQLSDYLIEQVTSIGKAK 157
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V + L + T ASLR+DA+ +A F SR++ LI G VRVNW
Sbjct: 158 VRLEKRELQGARVPQEDWQELVTTVASLRLDAVVAASFNYSRNRAKQLIERGQVRVNWEE 217
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGE 219
+ + L + D++SV GRIK+ E
Sbjct: 218 IDRPDYELASRDLISVRHGGRIKVQE 243
>gi|398310642|ref|ZP_10514116.1| shape determination protein [Bacillus mojavensis RO-H-1]
Length = 257
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 12/223 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 68
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE +T SD ++ A
Sbjct: 35 TDFLDP---REQVILAAVTGQADVGLAFCGGYGRAERKR-AILYPEYITPEESDFEL-QA 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
+ F H LGS++G G+ R+K GD++ E Q +V E AD++ L +
Sbjct: 90 FDVRYAEKFVTVDHRSLLGSLMGIGLKRQKFGDLVF-SETAVQIIVSAETADFVAAQLTQ 148
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
G +V +I L L+ + +SLR+DA+ ++ + SR K L+ NG V+
Sbjct: 149 AGKAAVKLEKIDLSDLKIPALDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
VNW V + GD++S+ G GR + +I T+K K+ V
Sbjct: 209 VNWKVVEDPSYQVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251
>gi|423612112|ref|ZP_17587973.1| hypothetical protein IIM_02827 [Bacillus cereus VD107]
gi|401247119|gb|EJR53463.1| hypothetical protein IIM_02827 [Bacillus cereus VD107]
Length = 255
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 6/231 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + DV G P+AER R ++ +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ +L+ +G V V+ + I + + + +SLR+D L + +SR K
Sbjct: 139 YIEMNLQSIGKVKVTLSPIQVEQILQVSEKWGEKSGTVSSLRLDVLLAEMLHISRQKAQP 198
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW TV + GD+ S+ G GR K+ + T++ K+ V
Sbjct: 199 LIKNGLVKVNWKTVEQTSYECFPGDVFSIRGYGRSKLFSVEGRTKRDKWRV 249
>gi|402555979|ref|YP_006597250.1| S4 domain-containing protein [Bacillus cereus FRI-35]
gi|401797189|gb|AFQ11048.1| S4 domain protein [Bacillus cereus FRI-35]
Length = 255
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G QAER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALIYPDYLVVN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|229140546|ref|ZP_04269101.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST26]
gi|229198009|ref|ZP_04324723.1| RNA-binding S4 domain protein [Bacillus cereus m1293]
gi|228585488|gb|EEK43592.1| RNA-binding S4 domain protein [Bacillus cereus m1293]
gi|228643107|gb|EEK99383.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST26]
Length = 241
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G QAER R ++ +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALIYPDYLVIN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 125 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|385812132|ref|YP_005848523.1| ribosomal protein S4e [Lactobacillus fermentum CECT 5716]
gi|299783031|gb|ADJ41029.1| Ribosomal protein S4e [Lactobacillus fermentum CECT 5716]
Length = 261
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 95/206 (46%), Gaps = 4/206 (1%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITG 73
FL P + + +VK +G YP AE R + +P T D + L I
Sbjct: 39 FLNPRQRYIMRVIANRQDEVKVAFKGAYPGAEMQR-GLAYPAYYQPTEDDFELQLLEINY 97
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F H +G++L TG+ R GDII E Q +V +L+DYLI + +G
Sbjct: 98 PQKFAELHHRQVMGAVLSTGVERGAFGDIIASDEHW-QIIVQRQLSDYLIEQVTSIGKAK 156
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V + L + T ASLR+DA+ +A F SR++ LI G VRVNW
Sbjct: 157 VRLEKRELQGARVPQEDWQELVTTVASLRLDAVVAASFNYSRNRAKQLIERGQVRVNWEE 216
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGE 219
+ + L + D++SV GRIK+ E
Sbjct: 217 IDRPDYELASRDLISVRHGGRIKVQE 242
>gi|389573338|ref|ZP_10163413.1| hypothetical protein BAME_19820 [Bacillus sp. M 2-6]
gi|388427035|gb|EIL84845.1| hypothetical protein BAME_19820 [Bacillus sp. M 2-6]
Length = 258
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 5/220 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
+DFL P + ++ ++ + GGY +AER R ++ +P+ L
Sbjct: 35 TDFLDPREQFITQSVIQHSDELGLMFFGGYEEAERKR-ALIYPDYLAPSIQDFELTYFQV 93
Query: 74 NFG--FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
N+ F H + LGS++GTG+ R+K GD++ E QF+ ++AD++ L VG
Sbjct: 94 NYAKKFISIEHPNLLGSLIGTGLKRQKFGDLLF-SEDNVQFICTSDVADFVRAQLTHVGR 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
SVS I ++ +T + +SLR+DA+ +A + SR K L+ NG V+VNW
Sbjct: 153 ASVSLEEISKADIQPVISKTDIKEDTISSLRLDAVCAAVSRQSRQKAQLLVKNGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
T+ GD +SV G GR + I+ T+K KF V
Sbjct: 213 KVTEDPSFTIGEGDQLSVRGFGRFSLKTIDGKTKKDKFKV 252
>gi|386758263|ref|YP_006231479.1| shape determination protein [Bacillus sp. JS]
gi|384931545|gb|AFI28223.1| shape determination protein [Bacillus sp. JS]
Length = 257
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 12/223 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 68
+DFL P +E ++ A+ DV GGY +AER R ++ +PE +T SD ++ A
Sbjct: 35 TDFLDP---REQVILTAVTGQTDVGLAFSGGYDRAERKR-AILYPEYITPEESDFEL-QA 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
+ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FHVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SESAVQLIVSADTADFVAAQLTQ 148
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
G +VS +I L L + +SLR+DA+ ++ + SR K L+ NG V+
Sbjct: 149 AGKATVSLEKIGLSDLNIPAIDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
VNW V + GD++S+ G GR + +I T+K K+ V
Sbjct: 209 VNWKVVEDPSYIVAEGDMLSIRGFGRCSLSKIEGKTKKDKWRV 251
>gi|229006180|ref|ZP_04163866.1| RNA-binding S4 domain protein [Bacillus mycoides Rock1-4]
gi|228755021|gb|EEM04380.1| RNA-binding S4 domain protein [Bacillus mycoides Rock1-4]
Length = 246
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 114/232 (49%), Gaps = 11/232 (4%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDP 63
A +V +DFL P + + D G P+AER R ++ +P L ++
Sbjct: 14 AEEYHQVKLTDFLDPRQQQIVATIIGNQGDATLRLYGAEPKAERKR-ALIYPSYLDLNEE 72
Query: 64 DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 122
D V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+ Y+
Sbjct: 73 DFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQIIVAKEIVSYI 131
Query: 123 ITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+L+ +G ++VS + + +L L+ E K +SLR+D L + LSR K+
Sbjct: 132 EMNLQSIGKMTVSLSSVQADKVLRLQEE---WKEQSGTVSSLRLDVLLAEMLHLSRQKVQ 188
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW TV + GD+ S+ G GR K+ + T++ K+ V
Sbjct: 189 PLIKNGLVKVNWKTVEQTAYECFPGDVFSIRGYGRSKLFSVEGKTKRDKWRV 240
>gi|227535234|ref|ZP_03965283.1| ribosomal protein S4e [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|227187118|gb|EEI67185.1| ribosomal protein S4e [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
Length = 259
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 14/229 (6%)
Query: 9 REVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL--SVGHPEALTSDPD 64
R VL +DF P ++ S+++ + D+K V GGYP AER R+ + + A +D D
Sbjct: 31 RPVL-TDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRIIFAPSYFSATAADFD 87
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
I L I F H G++L G+ R+ GDII G+ QF V + D++ +
Sbjct: 88 I-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW-QFFVAAHMQDWVTS 145
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALASAGFKLSRSKLVNLI 182
+++K+G V V T PL +Y P + ++LR+D + + GF +SR + LI
Sbjct: 146 NVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVAHGFNISRQRAKTLI 203
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
G VR+ + + T DI+SV G GR+++ EI ++KGK V
Sbjct: 204 QGGKVRLKFGESDAPDAEIATSDIISVRGFGRLRLDEILGESKKGKLRV 252
>gi|184155056|ref|YP_001843396.1| hypothetical protein LAF_0580 [Lactobacillus fermentum IFO 3956]
gi|183226400|dbj|BAG26916.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
Length = 262
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 95/206 (46%), Gaps = 4/206 (1%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITG 73
FL P + + +VK +G YP AE R + +P T D + L I
Sbjct: 40 FLNPRQRYIMRVIANRQDEVKVAFKGAYPGAEMQR-GLAYPAYYQPTEDDFELQLLEINY 98
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F H +G++L TG+ R GDII E Q +V +L+DYLI + +G
Sbjct: 99 PQKFAELHHRQVMGAVLSTGVERGAFGDIIASDEHW-QIIVQRQLSDYLIEQVTSIGKAK 157
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V + L + T ASLR+DA+ +A F SR++ LI G VRVNW
Sbjct: 158 VRLEKRELQGARAPQEDWQELVTTVASLRLDAVVAASFNYSRNRAKQLIERGQVRVNWEE 217
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGE 219
+ + L + D++SV GRIK+ E
Sbjct: 218 IDRPDYELASRDLISVRHGGRIKVQE 243
>gi|138894669|ref|YP_001125122.1| RNA binding protein [Geobacillus thermodenitrificans NG80-2]
gi|196247716|ref|ZP_03146418.1| RNA-binding S4 domain protein [Geobacillus sp. G11MC16]
gi|134266182|gb|ABO66377.1| RNA binding protein [Geobacillus thermodenitrificans NG80-2]
gi|196212500|gb|EDY07257.1| RNA-binding S4 domain protein [Geobacillus sp. G11MC16]
Length = 257
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 113/223 (50%), Gaps = 7/223 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP--EALTSDPDIVAALSI 71
+DFL P + + DV+ GG P AER R + P E D DIV ++
Sbjct: 34 TDFLDPREQQIVQSIVGSDEDVRVSFFGGVPFAERKRAFLYPPYIEPDEGDYDIVL-FAV 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H D LG+++ G+ R K GDI++QG + QF E+ADY+ +E +G
Sbjct: 93 RYPDKFISLEHRDVLGALMSLGLRRGKFGDILVQGGE-IQFFAAAEVADYIRLHVETIGK 151
Query: 132 VSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V+ +PL A+ E + T+ +SLR+DA+ + F+L+R K L+ +G V+VN
Sbjct: 152 ARVTLEPLPLSAAMPIEETWQEGTVTV-SSLRLDAVLAQAFRLARDKARTLVESGLVKVN 210
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
W V K GD++S G GR K+ + T+K ++ V +
Sbjct: 211 WRVVDKPDFVCGPGDVLSARGFGRCKLFSVEGPTKKERWLVRI 253
>gi|228998678|ref|ZP_04158265.1| RNA-binding S4 domain protein [Bacillus mycoides Rock3-17]
gi|228761146|gb|EEM10105.1| RNA-binding S4 domain protein [Bacillus mycoides Rock3-17]
Length = 257
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 114/232 (49%), Gaps = 11/232 (4%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDP 63
A +V +DFL P + + D G P+AER R ++ +P L ++
Sbjct: 25 AEEYHQVKLTDFLDPRQQQIVATIIGNQGDATLRLYGAEPKAERKR-ALIYPSYLDLNEE 83
Query: 64 DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 122
D V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+ Y+
Sbjct: 84 DFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQIIVAKEIVSYI 142
Query: 123 ITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+L+ +G ++VS + + +L L+ E K +SLR+D L + LSR K+
Sbjct: 143 EMNLQSIGKMTVSLSSVQADKVLRLQEE---WKEQSGTVSSLRLDVLLAEMLHLSRQKVQ 199
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW TV + GD+ S+ G GR K+ + T++ K+ V
Sbjct: 200 PLIKNGLVKVNWKTVEQTAYECFPGDVFSIRGYGRSKLFSVEGKTKRDKWRV 251
>gi|210612739|ref|ZP_03289454.1| hypothetical protein CLONEX_01656 [Clostridium nexile DSM 1787]
gi|210151432|gb|EEA82440.1| hypothetical protein CLONEX_01656 [Clostridium nexile DSM 1787]
Length = 264
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 13/243 (5%)
Query: 1 MARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA 58
++R + R V +SDFL L +M E K GGY +ER ++ P+A
Sbjct: 28 LSRLSYQRGIVTYSDFLNLNELNILHTMPKTELYTTYKVF--GGYDFSER-QMVAFLPDA 84
Query: 59 LTSDP----DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 114
+ ++ + F + SH D+LG++L GI R KIGDI++Q E A V
Sbjct: 85 FCYEYFYPISVLKIRPLQKKFS-EALSHRDYLGAVLNLGIERSKIGDILVQ-EDSAILFV 142
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 174
L ++ L+++ + SV Y P + T+ +SLR+D+L + F S
Sbjct: 143 HQSLEQFIQDELKRIRHTSVMAEPENFEKFSYTPQIEEKKGTV-SSLRLDSLLALAFSSS 201
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELI 233
R+KLV I NG V VN +T NG ++ DI+SV G GR + E ++ T++G++ V +
Sbjct: 202 RTKLVPYIENGKVFVNGKLITSNGYQIKQDDIISVRGLGRFQYKEMLSQTKRGRYLVTIH 261
Query: 234 QYL 236
Y+
Sbjct: 262 LYI 264
>gi|206976717|ref|ZP_03237621.1| S4 domain protein [Bacillus cereus H3081.97]
gi|217961318|ref|YP_002339886.1| S4 domain-containing protein [Bacillus cereus AH187]
gi|222097343|ref|YP_002531400.1| s4 domain protein [Bacillus cereus Q1]
gi|375285823|ref|YP_005106262.1| S4 domain-containing protein [Bacillus cereus NC7401]
gi|423353601|ref|ZP_17331228.1| hypothetical protein IAU_01677 [Bacillus cereus IS075]
gi|423374305|ref|ZP_17351643.1| hypothetical protein IC5_03359 [Bacillus cereus AND1407]
gi|423567206|ref|ZP_17543453.1| hypothetical protein II7_00429 [Bacillus cereus MSX-A12]
gi|423574496|ref|ZP_17550615.1| hypothetical protein II9_01717 [Bacillus cereus MSX-D12]
gi|206745027|gb|EDZ56430.1| S4 domain protein [Bacillus cereus H3081.97]
gi|217063822|gb|ACJ78072.1| S4 domain protein [Bacillus cereus AH187]
gi|221241401|gb|ACM14111.1| S4 domain protein [Bacillus cereus Q1]
gi|358354350|dbj|BAL19522.1| S4 domain protein [Bacillus cereus NC7401]
gi|401089414|gb|EJP97585.1| hypothetical protein IAU_01677 [Bacillus cereus IS075]
gi|401094217|gb|EJQ02299.1| hypothetical protein IC5_03359 [Bacillus cereus AND1407]
gi|401212021|gb|EJR18767.1| hypothetical protein II9_01717 [Bacillus cereus MSX-D12]
gi|401214294|gb|EJR21024.1| hypothetical protein II7_00429 [Bacillus cereus MSX-A12]
Length = 255
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G QAER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALIYPDYLVIN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|339009200|ref|ZP_08641772.1| hypothetical protein BRLA_c30190 [Brevibacillus laterosporus LMG
15441]
gi|421873603|ref|ZP_16305215.1| S4 domain protein [Brevibacillus laterosporus GI-9]
gi|338773678|gb|EGP33209.1| hypothetical protein BRLA_c30190 [Brevibacillus laterosporus LMG
15441]
gi|372457390|emb|CCF14764.1| S4 domain protein [Brevibacillus laterosporus GI-9]
Length = 257
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 113/232 (48%), Gaps = 7/232 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
M R R+ + +DFL P L ++ DV+ A GGY AER R ++ HP +
Sbjct: 21 MLRLVDERQIIRLTDFLDPRQLFILQSLTSQVQDVRVSASGGYDGAERVR-ALLHPSYIV 79
Query: 61 -SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
D D + I GN F H D +G++L GI REK GDI++ E Q +V E+
Sbjct: 80 PEDVDFGLRLFEIKGNQRFIAWEHRDVMGALLHVGIKREKFGDILV-SEHSCQTVVAEEI 138
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGFKLSRSK 177
AD++ + + + VS I L P + + KT S R+DA+ KLSR+K
Sbjct: 139 ADFVRMQVASIHRIPVSLQEISFAELTV-PEKKGTNKTFTVMSARLDAIIGEVCKLSRAK 197
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 228
+ I G +VN V ++ GD++S+ G GR +I E+ T+ G+
Sbjct: 198 ALLPIRAGKCKVNHKIVEDPSHSIAQGDMISLGGFGRFEITEVTGPTKSGRL 249
>gi|228992632|ref|ZP_04152558.1| RNA-binding S4 domain protein [Bacillus pseudomycoides DSM 12442]
gi|228766964|gb|EEM15601.1| RNA-binding S4 domain protein [Bacillus pseudomycoides DSM 12442]
Length = 257
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 114/232 (49%), Gaps = 11/232 (4%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDP 63
A +V +DFL P + + D G P+AER R ++ +P L ++
Sbjct: 25 AEEYHQVKLTDFLDPRQQQIVATIVGNQGDATLRLYGAEPKAERKR-ALIYPSYLDLNEE 83
Query: 64 DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 122
D V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+ Y+
Sbjct: 84 DFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQIIVAKEIVSYI 142
Query: 123 ITSLEKVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+L+ +G ++VS + + +L L+ E K +SLR+D L + LSR K+
Sbjct: 143 EMNLQSIGKMTVSLSSVQADKVLRLQEE---WKEQSGTVSSLRLDVLLAEMLHLSRQKVQ 199
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW TV + GD+ S+ G GR K+ + T++ K+ V
Sbjct: 200 PLIKNGLVKVNWKTVEQTAYECFPGDVFSIRGYGRSKLFSVEGKTKRDKWRV 251
>gi|423385399|ref|ZP_17362655.1| hypothetical protein ICE_03145 [Bacillus cereus BAG1X1-2]
gi|401635455|gb|EJS53210.1| hypothetical protein ICE_03145 [Bacillus cereus BAG1X1-2]
Length = 255
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+R + +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + + +L + +E KS +SLR+D + + LSR K
Sbjct: 139 YIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 195
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 196 VQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|229157476|ref|ZP_04285553.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 4342]
gi|228625926|gb|EEK82676.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 4342]
Length = 241
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + +V G QAER R ++ +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GEVAVQFDGATSQAERKR-ALIYPDYLVVN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 125 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 184 PLIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|357236380|ref|ZP_09123723.1| YlmH protein [Streptococcus criceti HS-6]
gi|356884362|gb|EHI74562.1| YlmH protein [Streptococcus criceti HS-6]
Length = 261
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 7/217 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DFL P +K + ++ +K Y + E R+ + P+ +P VA L I
Sbjct: 37 TDFLDPRQVKIAESVFGQMG-IKYYLSTDYLKTEYARV-IAAPDYYELEPQDFEVALLEI 94
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ N F +H +GS + GI R GDIIL E AQ +V L Y T +EK+G
Sbjct: 95 SYNSKFNHLTHAQIMGSFINKLGIQRNVFGDIIL-TEVRAQIIVTKSLVSYFAT-VEKIG 152
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+V + L R K F + +SLR+D + ++ FKLSRS L+ V++N
Sbjct: 153 RAAVKIKEVDFSQLLLPANRAKEFDVLVSSLRLDKVIASAFKLSRSLASKLVEQEKVKLN 212
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGK 227
+ +T+ L GD+VSV G GR +I N K K
Sbjct: 213 YGLLTRPAELLELGDLVSVRGYGRFQIYRDNGLSKNK 249
>gi|354807874|ref|ZP_09041326.1| S4 domain protein [Lactobacillus curvatus CRL 705]
gi|354513624|gb|EHE85619.1| S4 domain protein [Lactobacillus curvatus CRL 705]
Length = 262
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 96/202 (47%), Gaps = 5/202 (2%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
DV+ GGY AER R + +D D + I F SHG LG+++
Sbjct: 58 DVRYHFNGGYNAAERKRAMIAPDYFEPTDADFEIQLFEIRYPIKFANLSHGKVLGTLVNA 117
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
GI R+ GDI+ E+ QF V ++A Y+ + K+G VSV L P
Sbjct: 118 GIDRDVFGDIMTDEERW-QFFVTKKMAGYVEEQITKIGRVSVHLQEQDYTQL-LTPKDAW 175
Query: 153 SF-KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
F +T +S R+D + S + LSR + LI V++NW K L DIVSV G
Sbjct: 176 QFEQTTVSSFRLDTIISTVYNLSRQRAKELIQANKVKLNWQAFDKPDFELALLDIVSVRG 235
Query: 212 KGRIKIGEIN-STRKGKFAVEL 232
GRI++ I+ TRK K+ V L
Sbjct: 236 FGRIQLQSIDGQTRKEKYRVTL 257
>gi|111075038|gb|ABH04885.1| uncharacterized conserved protein ylmH [Heliobacillus mobilis]
Length = 263
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 118/237 (49%), Gaps = 15/237 (6%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 63
R SS+++V +DFL P +LK +M L L DV + GGYP+AER RL + E D
Sbjct: 32 RRSSKQQV--TDFLEPFLLKTAMDILRGLDDVSVLDDGGYPEAERKRLVLLPGEWELPDS 89
Query: 64 DIVAAL-SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 122
+ + G H D+LGS+LG GI REK+GD+ L +KG LV ++A Y+
Sbjct: 90 RSCWLMGEVRGEV--DKIGHRDYLGSLLGLGIRREKMGDLKLT-KKGCAVLVDRDVAAYV 146
Query: 123 ITSLEKVGNVSVSCTRIPLLALEYEPP----RTKSFKTIEASLRVDALASAGFKLSRSKL 178
+V +S L E P + + ASLR DA+ +A + LSRSK
Sbjct: 147 EAHWNQVQRFPLSVR----LGDGDEKPDFIEKGEEKSVTVASLRFDAIVAAIWHLSRSKA 202
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQ 234
IS G +RVN + DI+S+ G GR + EI T+KG+ + + Q
Sbjct: 203 DEAISRGLLRVNGLETSDGSRMASVKDILSLRGFGRAILREIGGPTKKGRIRITIWQ 259
>gi|423437350|ref|ZP_17414331.1| hypothetical protein IE9_03531 [Bacillus cereus BAG4X12-1]
gi|401120505|gb|EJQ28301.1| hypothetical protein IE9_03531 [Bacillus cereus BAG4X12-1]
Length = 255
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+R + +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRVAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + +L + +E KS +SLR+D + + LSR K
Sbjct: 139 YIEMNLQSIGKVKVSLASVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 195
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 196 VQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|312111751|ref|YP_003990067.1| RNA-binding S4 domain-containing protein [Geobacillus sp. Y4.1MC1]
gi|311216852|gb|ADP75456.1| RNA-binding S4 domain protein [Geobacillus sp. Y4.1MC1]
Length = 257
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + + +V GG ER R + P S+ D +A +
Sbjct: 34 TDFLDPREQQIVQSVIGRDEEVHFSFFGGASFTERKRALLYPPYFQPSEEDYEIALFEVR 93
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F H LG+++ G+ R K GDI+++ E+ QFL E+ADY+ L +G
Sbjct: 94 YPSKFVTIGHRQVLGALMSLGLRRGKFGDILMKDEQ-IQFLAANEVADYIRLHLHAIGKA 152
Query: 133 SVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
+VS + PL ++ E + T+ +SLR+DA+ S F SR K+ + I NG V+VNW
Sbjct: 153 NVSVEKKPLTDIIKLEENWQDAMITV-SSLRLDAILSQAFHTSRQKIQSCIENGLVKVNW 211
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
V + R GD++S G GR KI ++ T+K ++ + +
Sbjct: 212 KIVDQAHFECRQGDVLSARGFGRCKIIAMDGKTKKDRWRIRI 253
>gi|333394736|ref|ZP_08476555.1| hypothetical protein LcorcK3_02887 [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145231|ref|ZP_14652703.1| S4 domain protein [Lactobacillus coryniformis subsp. coryniformis
CECT 5711]
gi|398403137|gb|EJN56406.1| S4 domain protein [Lactobacillus coryniformis subsp. coryniformis
CECT 5711]
Length = 260
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 5/195 (2%)
Query: 41 GGYPQAERCRLSVGHPEAL--TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
GGY AER R + +PE T + + I F SHG LG+++ GI RE
Sbjct: 63 GGYLAAERKRALI-YPEYFVPTQEDFDIQLFEIHYPTKFATLSHGKVLGTLVNAGIKREV 121
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 158
GDI+ G++ QF V +ADY+ T + ++G + V L T
Sbjct: 122 FGDIMTDGDRW-QFFVTASMADYIQTQITQIGRIGVRLEPKDYTELLVPKDAWSLEHTTA 180
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218
+SLR+D L SA + +SR + L+ NG +++NW + L DI+SV G GRI++
Sbjct: 181 SSLRIDGLISAVYNISRQRSKELVENGKIKLNWQVFERPDFELGLRDIISVRGFGRIQLR 240
Query: 219 EIN-STRKGKFAVEL 232
EI ++K K+ + L
Sbjct: 241 EIEGKSKKDKYRLLL 255
>gi|299821564|ref|ZP_07053452.1| S4 domain-containing protein YlmH [Listeria grayi DSM 20601]
gi|299817229|gb|EFI84465.1| S4 domain-containing protein YlmH [Listeria grayi DSM 20601]
Length = 258
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 96/195 (49%), Gaps = 6/195 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
++K GG ER R + + E +D +I A I F +H LG+++
Sbjct: 55 NIKVAFNGGRAHTERVRALIYPDYYEPAETDFEI-ALFQIRYPVKFTTLTHQKILGTLMS 113
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPR 150
G+ R+ GDI L+ E QF V + DYL T +EK+G V+V +PL A+
Sbjct: 114 LGMKRDIFGDI-LEKEDIWQFFVEASMKDYLSTQIEKIGKVNVMLEEVPLTDAILTHVDW 172
Query: 151 TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 210
+ T+ +SLR+D L +A +SR K L+ G VRVNW T+ DI+SV
Sbjct: 173 IEKAITV-SSLRLDVLIAASHNISRQKAKQLVQGGLVRVNWKTIENADFLCVAEDIISVR 231
Query: 211 GKGRIKIGEINSTRK 225
G GRIK+ E N K
Sbjct: 232 GYGRIKLMETNGKSK 246
>gi|336236134|ref|YP_004588750.1| RNA-binding S4 domain-containing protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720667|ref|ZP_17694849.1| RNA-binding S4 domain-containing protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|335362989|gb|AEH48669.1| RNA-binding S4 domain protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|383366020|gb|EID43311.1| RNA-binding S4 domain-containing protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 257
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + + +V GG ER R + P S+ D +A +
Sbjct: 34 TDFLDPREQQIVQSVIGRDEEVHFSFFGGASFTERKRALLYPPYFQPSEEDYEIALFEVR 93
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F H LG+++ G+ R K GDI+++ E+ QFL E+ADY+ L +G
Sbjct: 94 YPSKFVTIGHRQVLGALMSLGLRRGKFGDILMKDEQ-IQFLAANEVADYIRLHLHAIGKA 152
Query: 133 SVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
+VS + PL ++ E + T+ +SLR+DA+ S F SR K+ + I NG V+VNW
Sbjct: 153 NVSVEKKPLTDIIKLEENWQDAMITV-SSLRLDAILSQAFHASRQKIQSCIENGLVKVNW 211
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
V + R GD++S G GR KI ++ T+K ++ + +
Sbjct: 212 KIVDQAHFECRQGDVLSARGFGRCKIIAMDGKTKKDRWRIRI 253
>gi|116629833|ref|YP_815005.1| cell division protein [Lactobacillus gasseri ATCC 33323]
gi|282851657|ref|ZP_06261022.1| S4 domain protein [Lactobacillus gasseri 224-1]
gi|420148405|ref|ZP_14655673.1| S4 domain protein [Lactobacillus gasseri CECT 5714]
gi|116095415|gb|ABJ60567.1| Cell division protein, S4-like domain [Lactobacillus gasseri ATCC
33323]
gi|282557625|gb|EFB63222.1| S4 domain protein [Lactobacillus gasseri 224-1]
gi|398399957|gb|EJN53553.1| S4 domain protein [Lactobacillus gasseri CECT 5714]
Length = 265
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 9/229 (3%)
Query: 8 RREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSV-GHPEALTSDP 63
+ E + +DFL P + +E + +L GG+ AE+ RL + +A
Sbjct: 34 KNEPILTDFLNPREQYIFREIVGGYAQLYSF-----GGFSNAEKKRLLLCDWGQAYEPSM 88
Query: 64 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 123
V L I + +H LG + GI + GDII QF V EL DY I
Sbjct: 89 FKVTLLEIDYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGKWQFFVKTELKDYFI 148
Query: 124 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 183
+ +VG V +PL + + +K I SLR+DA+ SA LSRS++ +I+
Sbjct: 149 EQVTRVGRTKVKLHDLPLSKVLAQEDDSKELSVITISLRLDAVVSAVTNLSRSQVKKIIA 208
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+G+V++NW V ++ + D+ S+ GR +I + +T+KGK +E+
Sbjct: 209 DGEVKLNWHLVAQSNIIVSVQDMFSIRHYGRYEIINLATTKKGKKRLEI 257
>gi|417986647|ref|ZP_12627214.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
32G]
gi|410525233|gb|EKQ00137.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
32G]
Length = 249
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 13/218 (5%)
Query: 9 REVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL--SVGHPEALTSDPD 64
R VL +DF P ++ S+++ + D+K V GGYP AER R+ + + A +D D
Sbjct: 31 RPVL-TDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRIIFAPSYFSATAADFD 87
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
I L I F H G++L G+ R+ GDII G+ QF V + D++ +
Sbjct: 88 I-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDIITDGDIW-QFFVAAHMQDWVTS 145
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRT--KSFKTIEASLRVDALASAGFKLSRSKLVNLI 182
+++K+G V V T PL +Y P + ++LR+D + + GF +SR + LI
Sbjct: 146 NVDKIGRVGVHFTEHPLA--DYVTPENDWEPLNFSVSALRLDTVVAHGFNISRQRAKTLI 203
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 220
G VR+N+ + T DI+SV G GR+++ EI
Sbjct: 204 QGGKVRLNFGESDAPDAEIATSDIISVRGFGRLRLDEI 241
>gi|379012021|ref|YP_005269833.1| hypothetical protein Awo_c21690 [Acetobacterium woodii DSM 1030]
gi|375302810|gb|AFA48944.1| hypothetical protein containing a RNA-binding S4 domain
[Acetobacterium woodii DSM 1030]
Length = 245
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GGY AER L + L ++ D + A+ F P H + LG ++ GI RE +
Sbjct: 52 GGYSDAERKMLCIYPEYLLEAELDWPIFAIEFDKTF---PLDHRNVLGELMHLGITRESV 108
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDI + G+K Q LV L DYL T+ +V ++ + K I A
Sbjct: 109 GDINI-GDKTVQILVHQRLHDYLWTNFNQVKGREINVRLKEYAQISGFQKEFKRLSVIVA 167
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
S R+D + + + SR + I G VRVN+T + KN L+ GDI+S+ GKG+ +I
Sbjct: 168 SNRLDGIINKIWGFSRQNSLVYIKQGKVRVNYTEIGKNDFRLQPGDIISLRGKGKARIVS 227
Query: 220 INS-TRKGKFAVELIQY 235
+N T+KG +E+ QY
Sbjct: 228 MNERTKKGNIRLEVDQY 244
>gi|260663600|ref|ZP_05864489.1| RNA-binding S4 domain-containing protein [Lactobacillus fermentum
28-3-CHN]
gi|260551826|gb|EEX24941.1| RNA-binding S4 domain-containing protein [Lactobacillus fermentum
28-3-CHN]
Length = 261
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 95/206 (46%), Gaps = 4/206 (1%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITG 73
FL P + + +VK +G YP AE R + +P T D + L I
Sbjct: 39 FLNPRQRYIMRVIANRQDEVKVAFKGAYPGAEMQR-GLAYPAYYQPTEDDFELQLLEINY 97
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F H +G++L TG+ R GDII E Q ++ +L+DYLI + +G
Sbjct: 98 PQKFAELHHRQVMGAVLSTGVERGAFGDIIASDEHW-QIIIQRQLSDYLIEQVTSIGKAK 156
Query: 134 VSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
V + L + T ASLR+DA+ +A F SR++ LI G VRVNW
Sbjct: 157 VRLEKRELQGARAPQEDWQELVTTVASLRLDAVVAASFNYSRNRAKQLIERGQVRVNWEE 216
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGE 219
+ + L + D++SV GRIK+ E
Sbjct: 217 IDRPDYELASRDLISVRHGGRIKVQE 242
>gi|385826107|ref|YP_005862449.1| cell division protein [Lactobacillus johnsonii DPC 6026]
gi|329667551|gb|AEB93499.1| cell division protein [Lactobacillus johnsonii DPC 6026]
Length = 265
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 5/227 (2%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADV-KAVAQGGYPQAERCR-LSVGHPEALTSDPDI 65
+ E + +DFL P +E + E + + + GG+ AE+ R L E D
Sbjct: 34 KNEPILTDFLNP---REQYIFREIVGGYAQLYSFGGFSNAEKKRMLLCDWSEGYKPDEFN 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
++ L I + +H LG + GI + GDII F + EL DY +
Sbjct: 91 ISLLEIAYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGNWLFFIKAELKDYFLEE 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
++++G V + +PL + + ++ ++ SLR+DA+ SA LSRS++ +I G
Sbjct: 151 IDRIGRTKVKLSELPLSKVLVQEDDSEEMTSVAISLRLDAVISAITNLSRSQVKKIIEAG 210
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+V++NW VT++ + D++S+ GR +I + +T+KGK +E+
Sbjct: 211 EVKLNWHLVTQSNIIISVQDMLSIRHYGRYEIINLATTKKGKKRLEI 257
>gi|423528243|ref|ZP_17504688.1| hypothetical protein IGE_01795 [Bacillus cereus HuB1-1]
gi|402451906|gb|EJV83725.1| hypothetical protein IGE_01795 [Bacillus cereus HuB1-1]
Length = 255
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+R + +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + + +L + +E KS +SLR+D + + LSR K
Sbjct: 139 YIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 195
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ I NG V++NW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 196 VQPFIKNGLVKINWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|408411391|ref|ZP_11182550.1| S4 domain protein [Lactobacillus sp. 66c]
gi|407874400|emb|CCK84356.1| S4 domain protein [Lactobacillus sp. 66c]
Length = 265
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 21/228 (9%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD----PDI---V 66
+DFL P K ++ ++ GGY +AE+ R+ LTSD P V
Sbjct: 40 TDFLDP--RKRQILQAVAGGEIMLDEYGGYDEAEKKRVY------LTSDWLPLPKKEFGV 91
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
+ L I+ F H LGS+ +G+ E GDI+ G+ QF EL + ++
Sbjct: 92 SLLEISYPQKFAQLRHSQILGSLANSGVKTETFGDIVTDGQGRWQFFAEKELVPFFSENI 151
Query: 127 EKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 183
++G V V + LLA+E +K+ + ASLR+DA+ +A SR++L +
Sbjct: 152 YRMGPVKVKLEEVEMRDLLAIE---DGSKALDGVAASLRLDAVLAALSGKSRTQLKQALE 208
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
G+VR+NW TK ++ GD+VS+ GR+KI I T+KG+F +E
Sbjct: 209 AGEVRLNWHPETKAEKEVQIGDLVSLRHFGRVKILSIYPTKKGRFHLE 256
>gi|409350244|ref|ZP_11233430.1| S4 domain protein [Lactobacillus equicursoris CIP 110162]
gi|407877568|emb|CCK85488.1| S4 domain protein [Lactobacillus equicursoris CIP 110162]
Length = 266
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 21/228 (9%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD----PDI---V 66
+DFL P K ++ ++ GGY +AE+ R+ LTSD P V
Sbjct: 41 TDFLDP--RKRQILQAVAGGEIMLDEYGGYDEAEKKRVY------LTSDWLPLPKKEFGV 92
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
+ L I+ F H LGS+ +G+ E GDI+ G+ QF EL + ++
Sbjct: 93 SLLEISYPQKFAQLRHSQILGSLANSGVKTETFGDIVTDGQGRWQFFAEKELVPFFSENI 152
Query: 127 EKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 183
++G V V + LLA+E +K+ + ASLR+DA+ +A SR++L +
Sbjct: 153 YRMGPVKVKLEEVEMRDLLAIE---DGSKALDGVAASLRLDAVLAALSGKSRTQLKQALE 209
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVE 231
G+VR+NW TK ++ GD+VS+ GR+KI I T+KG+F +E
Sbjct: 210 AGEVRLNWHPETKAEKEVQIGDLVSLRHFGRVKILSIYPTKKGRFHLE 257
>gi|154504401|ref|ZP_02041139.1| hypothetical protein RUMGNA_01905 [Ruminococcus gnavus ATCC 29149]
gi|336432353|ref|ZP_08612188.1| hypothetical protein HMPREF0991_01307 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153795330|gb|EDN77750.1| S4 domain protein [Ruminococcus gnavus ATCC 29149]
gi|336018690|gb|EGN48427.1| hypothetical protein HMPREF0991_01307 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 262
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 122/248 (49%), Gaps = 20/248 (8%)
Query: 5 ASSRREVLHSDFLTPPVLK-ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 63
A SR V +SDFL L M ++L K V GGY AER +++ P+AL+
Sbjct: 19 AYSRDIVTYSDFLNLNELNILHSMPKDRLY-TKFVTFGGYGLAER-QMAAFLPDALSLRG 76
Query: 64 DI-VAALSITGNFGF-------------QPCSHGDFLGSILGTGIAREKIGDIILQGEKG 109
++ + G++ F + +H D+LG+ILG GI R KIGDI++ G
Sbjct: 77 EMSWCSEEEWGDYPFDILRISPLHAKYAEQLTHRDYLGTILGLGIERAKIGDILVDGTDA 136
Query: 110 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 169
F V L +L+ L +V + V I +YEP + T+ AS+R+D+L S
Sbjct: 137 VVF-VHRTLQSFLMEELTRVRHTQVLVKEISREDFQYEPKYEEIRGTV-ASVRLDSLLSL 194
Query: 170 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKF 228
F SR+KL LI V VN +T N L+ D++SV G G+ + G T+K +
Sbjct: 195 AFSASRTKLSGLIEGAKVFVNGKLITTNSYQLKENDVISVRGYGKFRYNGTGAKTKKNRI 254
Query: 229 AVELIQYL 236
V + +Y+
Sbjct: 255 YVSVYKYI 262
>gi|443632790|ref|ZP_21116969.1| S4 domain-containing protein [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443347613|gb|ELS61671.1| S4 domain-containing protein [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 257
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 12/223 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEAL---TSDPDIVAA 68
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE + SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYGRAERKR-AILYPEYIIPEESDFEL-QA 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
++ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FNVRYAEKFVTVDHRSLLGALMGIGLRRQKFGDIVF-SETSVQLIVSADTADFVAAQLTQ 148
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
G +VS +I L L + +SLR+DA+ ++ + SR K L+ NG V+
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAIDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
VNW V + GD++S+ G GR + +I T+K K+ V
Sbjct: 209 VNWKVVEDPSYMVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251
>gi|421894307|ref|ZP_16324797.1| S4 domain protein [Pediococcus pentosaceus IE-3]
gi|385272851|emb|CCG90169.1| S4 domain protein [Pediococcus pentosaceus IE-3]
Length = 261
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 19/241 (7%)
Query: 5 ASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA 58
+SS +E L+ ++FL P + + ++K GG+ +AE R +
Sbjct: 21 SSSLQEALYQNRPILTNFLNPREQHILQTLVNRFPELKVYFNGGFSEAENKRALITPDYF 80
Query: 59 LTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
+ ++ D V I F H LG+++ GI R GDI+ Q E+ QF V E
Sbjct: 81 VPAEDDFSVRIFEINYPINFTDLEHRQILGTLVNAGIKRSTFGDIVHQAERW-QFAVNGE 139
Query: 118 LADYLITSLEKVGNVSV-----SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 172
L ++ + ++++G + V S I + ++EP +T+ ASLR+D++ S GF
Sbjct: 140 LENFFLNEIDRIGKIKVKLIPTSTNDILKVQDDWEPVN----QTV-ASLRMDSIISTGFS 194
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 231
+SR ++ LI V++NW K T + D++SV GRIK+ +I T+K K ++
Sbjct: 195 ISRHRVKELIEKRLVQLNWMIDEKADTLIALNDVISVRKYGRIKLIDILGKTKKDKLKIQ 254
Query: 232 L 232
L
Sbjct: 255 L 255
>gi|229031529|ref|ZP_04187529.1| RNA-binding S4 domain protein [Bacillus cereus AH1271]
gi|228729818|gb|EEL80798.1| RNA-binding S4 domain protein [Bacillus cereus AH1271]
Length = 241
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+R + +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 8 KRVAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVSVQFDGATPHAERKR-ALIYPDYLVVN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 125 YIEMNLQTIGKAKVSLSPVQGEKILQMQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|341821086|emb|CCC57422.1| ribosomal protein S4e [Weissella thailandensis fsh4-2]
Length = 261
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 4/222 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSI 71
++FL P + + + D+K GGY AE RL + + + D D+ + I
Sbjct: 36 TNFLNPREIYILTTLVNQQDDLKVFQYGGYQNAENQRLLIAPNYYVPVLDDFDL-KVIQI 94
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H LG+ + GIAR+ IGDII + F+ + +++ L+ +G
Sbjct: 95 KYPEKFTTLHHSTILGTFMHNGIARQSIGDIIKGENETWYFVATKAIGTFILQQLDHIGK 154
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V + + T +SLR+D++ + G+ +SR+ +I + VRVNW
Sbjct: 155 AKVRFKEVTGDHITVVDNEWTIINTTVSSLRLDSIVANGYNISRNHAKQMIEHDLVRVNW 214
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
T + K L D+VSV GR+KI E+N T+K K+ + +
Sbjct: 215 TDINKPDYVLAVNDLVSVRQYGRLKIDELNGLTKKNKWRITM 256
>gi|238853974|ref|ZP_04644331.1| cell division protein [Lactobacillus gasseri 202-4]
gi|238833419|gb|EEQ25699.1| cell division protein [Lactobacillus gasseri 202-4]
Length = 265
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 9/229 (3%)
Query: 8 RREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSV-GHPEALTSDP 63
+ E + +DFL P + +E + +L GG+ AE+ RL + +A
Sbjct: 34 KNEPILTDFLNPREQYIFREIVGGYAQLYSF-----GGFSNAEKKRLLLCDWGQAYEPSM 88
Query: 64 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 123
V L I + +H LG + GI + GDII QF V EL DY I
Sbjct: 89 FKVTLLEIDYPQKWSELTHSQILGVLTHLGIELDTFGDIINDENGKWQFFVKTELKDYFI 148
Query: 124 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 183
+ +VG V +PL + + +K I SLR+DA+ SA LSRS++ +I+
Sbjct: 149 EQVTRVGRTKVKLHDLPLSKVLAQEDDSKELIVITISLRLDAVVSAVTNLSRSQVKKIIA 208
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+G+V++NW V ++ + D+ S+ GR +I + +T+KGK +E+
Sbjct: 209 DGEVKLNWHLVAQSNIIVSVQDMFSIRHYGRYEIINLATTKKGKKRLEI 257
>gi|288904818|ref|YP_003430040.1| hypothetical protein GALLO_0607 [Streptococcus gallolyticus UCN34]
gi|288731544|emb|CBI13099.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
Length = 261
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 9/232 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+ARR +DFL P + + + V+ YP AE RL V P+
Sbjct: 23 LARRVEETYAYALTDFLNPRQVDIAKSVIGNRGLHYFVSSDYYP-AEYARLIVA-PDYYE 80
Query: 61 SDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVP 116
+P+ + L + N F +H +G++L GI R IGDI++ E G AQ LV
Sbjct: 81 FNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ESGYAQLLVTQ 138
Query: 117 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 176
+ADY ++ K+ SVS IPL L ++ + +S+R+D + + KLSRS
Sbjct: 139 NMADYFRANVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIMVSSMRMDKVLATVLKLSRS 198
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGK 227
+ V LI V++N+ V + L+ GD++SV G GR I E T+ GK
Sbjct: 199 QAVQLIETDKVKLNYQIVDRASEMLQVGDLISVRGFGRFSILSENGLTKNGK 250
>gi|295425121|ref|ZP_06817826.1| S4 domain protein [Lactobacillus amylolyticus DSM 11664]
gi|295065180|gb|EFG56083.1| S4 domain protein [Lactobacillus amylolyticus DSM 11664]
Length = 276
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 13/231 (5%)
Query: 8 RREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP-EALTSDP 63
+ E L +DFL P +LK + L D GGY +E+ R+ + E +
Sbjct: 44 KHESLLTDFLDPGQREILKIIVGNEAFLQDF-----GGYLNSEKRRVYLSEEWENFRTTD 98
Query: 64 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 123
V A I F +H LG++ +GI + GDII G QF EL Y
Sbjct: 99 FQVQAFEIQYPTKFYKLTHSSILGTLANSGIKTDTFGDIITDGHGKWQFFAKKELQSYFE 158
Query: 124 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNL 181
+ ++G V P+ E P S + +E +SLR+DA+ + K SR++L
Sbjct: 159 EQIVRIGKSKVKLQ--PISFKEVLVPEDDSIEKVEIVSSLRLDAILAGISKQSRTQLKTQ 216
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
I +G V++NW + + ++ D++S+ GR++I I STRKGKF V L
Sbjct: 217 IEDGTVKLNWHDIVNSNIMIKENDVISLRHFGRLQITSIASTRKGKFRVVL 267
>gi|116492942|ref|YP_804677.1| cell division protein [Pediococcus pentosaceus ATCC 25745]
gi|116103092|gb|ABJ68235.1| Cell division protein, S4-like domain [Pediococcus pentosaceus ATCC
25745]
Length = 261
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
++FL P + + ++K GG+ +AE R + + ++ D V I
Sbjct: 36 TNFLNPREQHILQTLVNRFPELKVYFNGGFSEAENKRALITPDYFVPAEDDFSVRIFEIN 95
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F H LG+++ GI R GDI+ Q E+ QF V EL ++ + ++++G +
Sbjct: 96 YPINFTDLEHRQILGTLVNAGIKRSTFGDIVHQAERW-QFAVNGELENFFLNEIDRIGKI 154
Query: 133 SV-----SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
V S I + ++EP +T+ ASLR+D++ S GF +SR ++ LI V
Sbjct: 155 KVKLIPTSTNDILKVQDDWEPVN----QTV-ASLRMDSIISTGFSISRHRVKELIEKRLV 209
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
++NW K T + D++SV GRIK+ +I T+K K ++L
Sbjct: 210 QLNWMIDEKADTLIALNDVISVRKYGRIKLVDILGKTKKDKLKIQL 255
>gi|381209821|ref|ZP_09916892.1| hypothetical protein LGrbi_07846 [Lentibacillus sp. Grbi]
Length = 258
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 6/221 (2%)
Query: 14 SDFLTPPVLK-ESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSI 71
+DFL P + +A + +++ GG AER R+ + + +T D + L
Sbjct: 34 TDFLNPREQQIVETLARTSMEELRVYKHGGSVNAERRRVIIAPMYDEVTDDSFQLTLLQG 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG-AQFLVVPELADYLITSLEKVG 130
+ + F H D +GS L GI R+K+GDI+ E G Q ++ E+A +++T+L +
Sbjct: 94 SYHDKFVSLGHRDVMGSFLSLGIKRQKLGDIM--AENGLIQIIMAEEIAPFILTNLTAIK 151
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+ PL +L I +SLR+D++ A +KLSR +IS G V+VN
Sbjct: 152 KTRIRLEERPLSSLVERKTNWDESNQIVSSLRLDSVVKAIYKLSRKDAAEMISKGLVKVN 211
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ L GD++S+ GKGR K+ +IN T+K K ++
Sbjct: 212 YKVSDDRKLILNAGDMLSLRGKGRSKLVDINGRTKKDKLSI 252
>gi|149184154|ref|ZP_01862478.1| S4 domain protein [Bacillus sp. SG-1]
gi|148848138|gb|EDL62464.1| S4 domain protein [Bacillus sp. SG-1]
Length = 258
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 11/223 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE-----RCRLSVGHPEALTSDPDIVAA 68
+DFL P + K +D+K YP E RC L + E SD V
Sbjct: 35 TDFLDPRQQYILSAIIGKNSDIKM---SFYPAQESVERKRCILYPDYFEPSHSDYG-VTL 90
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
I F H LGS++ G+ REK GDI++ ++ Q + E++D++ + ++
Sbjct: 91 FEINYPQKFVTLEHRQILGSLMSIGLKREKFGDILMNSDR-VQMITASEISDFVEMNFQE 149
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
VG V+ ++PL + + + T +SLR+D + SA + +SR K+ LI+ G V+
Sbjct: 150 VGRNKVTLEKVPLDRMVHSSEEWREALTTVSSLRLDVILSALYNVSRQKVQTLIAGGVVK 209
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
VNW V + GD+ S+ G GR K+ I T+K KF +
Sbjct: 210 VNWRVVESPAFEVAEGDVFSMRGHGRSKLISIEGKTKKDKFRI 252
>gi|336063821|ref|YP_004558680.1| S4 RNA-binding domain-containing protein [Streptococcus
pasteurianus ATCC 43144]
gi|334282021|dbj|BAK29594.1| S4 RNA-binding domain-containing protein [Streptococcus
pasteurianus ATCC 43144]
Length = 263
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 9/232 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+ARR + +DFL P + + + V+ YP AE RL V P+
Sbjct: 25 LARRVEATYAYALTDFLNPRQVDIARSVIGNRGLHYFVSSDYYP-AEYARLIVA-PDYYE 82
Query: 61 SDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVP 116
+P+ + L + N F +H +G++L GI R IGDI++ E G AQ LV
Sbjct: 83 FNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ESGYAQLLVTQ 140
Query: 117 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 176
+ADY + K+ SVS IPL L ++ I +S+R+D + + KLSRS
Sbjct: 141 NMADYFRADVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIIVSSMRMDKVLATVLKLSRS 200
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGK 227
+ V L+ V++N+ V + L+ GD++SV G GR I E T+ GK
Sbjct: 201 QAVQLMETDKVKLNYQIVDRASEMLQVGDLISVRGFGRFSILSENGLTKNGK 252
>gi|347534667|ref|YP_004841337.1| hypothetical protein LSA_10060 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504723|gb|AEN99405.1| hypothetical protein LSA_10060 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 263
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 7/231 (3%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT--- 60
RA++ + +DFL + + + +++ + GGY +E R + +P+ +
Sbjct: 28 RANTEYRPILTDFLNGREIYLLQTLVNRYPNLRLASNGGYINSEMKR-GLIYPDYFSPRS 86
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+D ++ A L + F H LG+++G GI R +GDII GEK + +V +A
Sbjct: 87 ADFEL-AILKVDYPVKFATLKHNQILGTVMGAGIERNVLGDIITDGEKW-EMVVEKSMAP 144
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
YLI S+++VG + V +P + +K SLR+D + +A F +SR+
Sbjct: 145 YLINSIDQVGRIKVKLVSMPNNEVLNVIDDSKVVNLTLPSLRMDVIIAAVFHISRNVAKE 204
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
LI + VR+NW T K + D++SV G GRIK+ N ++K K+ V
Sbjct: 205 LILHEKVRLNWFTYNKPDYDIAVHDLISVRGHGRIKMTANNGFSKKDKYKV 255
>gi|306830850|ref|ZP_07464012.1| S4 domain-containing protein YlmH [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|304426873|gb|EFM29983.1| S4 domain-containing protein YlmH [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
Length = 263
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 9/232 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+ARR +DFL P + + + V+ YP AE RL V P+
Sbjct: 25 LARRVEETYAYALTDFLNPRQVDIAKSVIGNRGLHYFVSSDYYP-AEYARLIVA-PDYYE 82
Query: 61 SDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVP 116
+P+ + L + N F +H +G++L GI R IGDI++ E G AQ LV
Sbjct: 83 FNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ESGYAQLLVTQ 140
Query: 117 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 176
+ADY ++ K+ SVS IPL L ++ + +S+R+D + + KLSRS
Sbjct: 141 NMADYFRANVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIMVSSMRMDKVLATVLKLSRS 200
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGK 227
+ V LI V++N+ V + L+ GD++SV G GR I E T+ GK
Sbjct: 201 QAVQLIETDKVKLNYQIVDRASEMLQVGDLISVRGFGRFSILSENGLTKNGK 252
>gi|229086462|ref|ZP_04218634.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-44]
gi|228696779|gb|EEL49592.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-44]
Length = 257
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 11/232 (4%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD 64
A +V +DFL P + + D G P+AER R ++ +P L + +
Sbjct: 25 AEEYHQVKLTDFLDPRQQQIVATIIGNQGDAILKFYGVAPKAERKR-ALIYPNYLDLNEE 83
Query: 65 --IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 122
+ L I F H LGS + G+ REK GDI+LQ E AQ +V E+A Y+
Sbjct: 84 EFQIEVLEIDYPSKFYSLEHRQILGSFMSLGLTREKCGDILLQ-ENRAQIVVAKEVASYI 142
Query: 123 ITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+L+ +G + VS + + +L L+ E K +SLR+D + + LSR K+
Sbjct: 143 EMNLQSIGKMKVSLSSVQADRILRLQEE---WKEQSGTVSSLRLDVVIAEMLHLSRQKVQ 199
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW TV + GD+ S+ G GR K+ + T++ K+ V
Sbjct: 200 PLIKNGLVKVNWKTVEQTAYECFPGDVFSIRGYGRSKLFSVEGKTKRDKWRV 251
>gi|161507320|ref|YP_001577274.1| cell division protein [Lactobacillus helveticus DPC 4571]
gi|260102623|ref|ZP_05752860.1| cell-division protein [Lactobacillus helveticus DSM 20075]
gi|160348309|gb|ABX26983.1| Cell division protein [Lactobacillus helveticus DPC 4571]
gi|260083577|gb|EEW67697.1| cell-division protein [Lactobacillus helveticus DSM 20075]
Length = 266
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 5/227 (2%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 65
+ E + +DFL P K +++ DV GGYP AE+ R+ + E + P +
Sbjct: 34 KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYPNAEKKRVYLSE-EWVNLQPSDYL 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ I F +H LG++ +GI + GDII QF EL D+
Sbjct: 91 IQPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENGKWQFFAKKELVDFFEEQ 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
+ ++G V I + + I AS+R+DA+ S+ K SR ++ LI N
Sbjct: 151 ITRIGRAQVKLKEITFKDVLVPEDDSTEKTEIVASMRIDAVLSSISKQSRGQIQKLIENH 210
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
V++NW + + ++ DI+S+ GRI I ++++TRKGK+ V L
Sbjct: 211 LVKLNWHDIADSNIMVKENDILSLRHFGRILIEDVSATRKGKYKVVL 257
>gi|385814079|ref|YP_005850472.1| Cell division protein, S4-like domain [Lactobacillus helveticus
H10]
gi|323466798|gb|ADX70485.1| Cell division protein, S4-like domain [Lactobacillus helveticus
H10]
Length = 266
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 5/227 (2%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 65
+ E + +DFL P K +++ DV GGYP AE+ R+ + E + P +
Sbjct: 34 KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYPNAEKKRVYLSE-EWVNLQPSDYL 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ I F +H LG++ +GI + GDII QF EL D+
Sbjct: 91 IEPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENGKWQFFAKKELVDFFEEQ 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
+ ++G V I + + I AS+R+DA+ S+ K SR ++ LI N
Sbjct: 151 ITRIGRAQVKLKEITFKDVLVPEDDSTEKTEIVASMRIDAVLSSISKQSRGQIQKLIENH 210
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
V++NW + + ++ DI+S+ GRI I ++++TRKGK+ V L
Sbjct: 211 LVKLNWHDIADSNIMVKENDILSLRHFGRILIEDVSATRKGKYKVVL 257
>gi|403515290|ref|YP_006656110.1| cell division protein [Lactobacillus helveticus R0052]
gi|403080728|gb|AFR22306.1| cell division protein [Lactobacillus helveticus R0052]
Length = 266
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 5/227 (2%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 65
+ E + +DFL P K +++ DV GGYP AE+ R+ + E + P +
Sbjct: 34 KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYPNAEKKRVYLSE-EWVNLQPSDYL 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ I F +H LG++ +GI + GDII QF EL D+
Sbjct: 91 IQPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENGKWQFFAKKELVDFFEEQ 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
+ ++G V I + + I AS+R+DA+ S+ K SR ++ LI N
Sbjct: 151 ITRIGRAQVKLKEITFKDVLVPEDDSTEKTEIVASMRIDAVLSSISKQSRGQIQKLIENH 210
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
V++NW + + ++ DI+S+ GRI I ++++TRKGK+ V L
Sbjct: 211 LVKLNWHDIADSNIMVKENDILSLRHFGRILIEDVSATRKGKYKVVL 257
>gi|423604475|ref|ZP_17580368.1| hypothetical protein IIK_01056 [Bacillus cereus VD102]
gi|401245095|gb|EJR51453.1| hypothetical protein IIK_01056 [Bacillus cereus VD102]
Length = 255
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+RA+ +V +DFL P + M + + DV G QAER R ++ +P+ L +
Sbjct: 22 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALIYPDYLVIN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW V + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PFIKNGLVKVNWKIVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|229019100|ref|ZP_04175935.1| RNA-binding S4 domain protein [Bacillus cereus AH1273]
gi|229025344|ref|ZP_04181762.1| RNA-binding S4 domain protein [Bacillus cereus AH1272]
gi|228735929|gb|EEL86506.1| RNA-binding S4 domain protein [Bacillus cereus AH1272]
gi|228742200|gb|EEL92365.1| RNA-binding S4 domain protein [Bacillus cereus AH1273]
Length = 241
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 6/231 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + +V G P++ER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GEVAVRFDGAMPESERKRALI-YPDYLELN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+A
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQIAVAKEVAS 124
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ +L+ +G V VS T + + + +SLR+D L + +SR K+
Sbjct: 125 YIEMNLQSIGKVKVSLTPVQAEQILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 184
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI G V+VNW TV + GD+ S+ G GR KI + T++ K+ +
Sbjct: 185 LIKGGLVKVNWKTVEQTAYECFPGDVFSIRGYGRSKIFSVEGKTKRDKWRI 235
>gi|313901208|ref|ZP_07834696.1| S4 domain protein [Clostridium sp. HGF2]
gi|346314197|ref|ZP_08855718.1| hypothetical protein HMPREF9022_01375 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|373121511|ref|ZP_09535379.1| hypothetical protein HMPREF0982_00308 [Erysipelotrichaceae
bacterium 21_3]
gi|422327527|ref|ZP_16408554.1| hypothetical protein HMPREF0981_01874 [Erysipelotrichaceae
bacterium 6_1_45]
gi|312954166|gb|EFR35846.1| S4 domain protein [Clostridium sp. HGF2]
gi|345906555|gb|EGX76279.1| hypothetical protein HMPREF9022_01375 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|371663367|gb|EHO28557.1| hypothetical protein HMPREF0981_01874 [Erysipelotrichaceae
bacterium 6_1_45]
gi|371665529|gb|EHO30694.1| hypothetical protein HMPREF0982_00308 [Erysipelotrichaceae
bacterium 21_3]
Length = 250
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 8/197 (4%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 100
GGY QAERCRL+ E P V L ++ F +H D LG+++ GI R+K G
Sbjct: 59 GGYAQAERCRLAFLPWEEEVQIP--VLHLKAKISYSFGKLAHRDVLGALMNLGIERDKTG 116
Query: 101 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT-IEA 159
D+I++ + V P++ +YLI +L ++ +V ++ YEP ++K+ I +
Sbjct: 117 DLIVE-QDAVHMFVDPDIGNYLIANLTQIKRCAVHLEPSEE-SVSYEP--DIAYKSLIVS 172
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+D L +A +LSR+K +LI + V+V+ + + ++S+ G GR ++ E
Sbjct: 173 SLRLDTLVAALARLSRAKAADLIRSKQVKVDHVILEQTSYLCDNTCVISIRGHGRFQLKE 232
Query: 220 -INSTRKGKFAVELIQY 235
+ T+KG +E+ Y
Sbjct: 233 VVKETKKGNLVIEVGMY 249
>gi|300814713|ref|ZP_07094963.1| S4 domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511186|gb|EFK38436.1| S4 domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 258
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 13/223 (5%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS-DPDIVAALSIT 72
SDFL P L + L L D+ GGY E +++ +P L + + A+
Sbjct: 41 SDFLNPHELSLAKSILNSL-DIGYSFDGGYDDYEYGVVNM-YPSFLHGPKSESICAMKFP 98
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
G + H D LGS++G GI R KIGDI++ G++ F V E+ D+++ +LEK+ N
Sbjct: 99 TIVGIK---HKDVLGSLIGLGIDRRKIGDILI-GKEFTYFFVKIEIKDFILYNLEKISNY 154
Query: 133 SVS-CTRIPLLALEYEPPRTKSFKTI-EASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+V C + L P + +K I +SLR+D S LSRSK+ ++IS V+VN
Sbjct: 155 NVKVCLKESTDVL---PIKEYFYKDIVTSSLRLDTFLSQALNLSRSKINDIISKDLVKVN 211
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
+T K L+ D++SV GRI +I +T+K K+ ++
Sbjct: 212 FTPENKVSYKLKESDVISVKKYGRIIFHKILKTTKKDKYLCQI 254
>gi|423389793|ref|ZP_17367019.1| hypothetical protein ICG_01641 [Bacillus cereus BAG1X1-3]
gi|423418194|ref|ZP_17395283.1| hypothetical protein IE3_01666 [Bacillus cereus BAG3X2-1]
gi|401106467|gb|EJQ14428.1| hypothetical protein IE3_01666 [Bacillus cereus BAG3X2-1]
gi|401641884|gb|EJS59601.1| hypothetical protein ICG_01641 [Bacillus cereus BAG1X1-3]
Length = 255
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 6/231 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + +V G P++ER R ++ +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GEVAVRFDGAMPESERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+A
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQIAVAKEVAS 138
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ +L+ +G V VS T + + + +SLR+D L + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLTPVQAEQILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 198
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI G V+VNW TV + GD+ S+ G GR KI + T++ K+ +
Sbjct: 199 LIKGGLVKVNWKTVEQTAYECFPGDVFSIRGYGRSKIFSVEGKTKRDKWRI 249
>gi|322385897|ref|ZP_08059539.1| S4 domain-containing protein YlmH [Streptococcus cristatus ATCC
51100]
gi|417922465|ref|ZP_12565953.1| S4 domain protein [Streptococcus cristatus ATCC 51100]
gi|321270076|gb|EFX52994.1| S4 domain-containing protein YlmH [Streptococcus cristatus ATCC
51100]
gi|342832562|gb|EGU66857.1| S4 domain protein [Streptococcus cristatus ATCC 51100]
Length = 261
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 108/224 (48%), Gaps = 9/224 (4%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAALSITG 73
FL P + + L K DV+ A Y +E ++ + + + D D+V L IT
Sbjct: 38 FLNPHQVN-ILKNLSKQYDVQVFASSDYFPSEFAKVLIAPSYYQLELEDFDVVL-LEITY 95
Query: 74 NFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F +H +G++L GI R GDII+ ++ AQ V L +Y IT++ K+ V
Sbjct: 96 ASKFYKVTHSQIMGTLLHQLGIERRTFGDIIVVDDR-AQVFVDRRLEEYFITNVSKIAKV 154
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
V R+ + P TK+ + +SLR+D L + FKLSRS+ V LI V+ N+
Sbjct: 155 PVRLRRVDFKDQLQDAPVTKTTDVLVSSLRLDKLVATVFKLSRSQAVELIMGKQVKQNYR 214
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAVELI 233
T+ L GD++SV GR KI N K K VEL+
Sbjct: 215 TIDNPSHQLSLGDLISVRKYGRFKILTENGFSKNGKHKLTVELL 258
>gi|319649646|ref|ZP_08003802.1| hypothetical protein HMPREF1013_00406 [Bacillus sp. 2_A_57_CT2]
gi|317398808|gb|EFV79490.1| hypothetical protein HMPREF1013_00406 [Bacillus sp. 2_A_57_CT2]
Length = 257
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 105/220 (47%), Gaps = 5/220 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP-DI-VAALSI 71
+DFL P + + + A + GG P AER R + P+ SD D + +
Sbjct: 34 TDFLDPREQQILKSVIGQHAGILFALFGGTPNAERKRALI-FPDYYESDEGDFQIRLFEL 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H LGS++ G+ R K GDI+ + ++ QF E+ DY+ L+ +G
Sbjct: 93 EYPKKFVTIEHPQVLGSLMSLGLKRGKFGDILFEDDR-IQFFAAQEIEDYISLQLQSIGR 151
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
SVS ++P K +SLR+D + SA + +SR K I G V+VNW
Sbjct: 152 ASVSLKKLPFSEAIQSAEVWKESSITSSSLRLDTVISAIYNISRQKSQLYIQQGLVKVNW 211
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
T + + DI+SV G+GR KI +I+ T+K K+ +
Sbjct: 212 TQIENPSFECQQSDIISVRGQGRSKIIDIDGKTKKDKWRI 251
>gi|329116034|ref|ZP_08244751.1| S4 domain protein [Streptococcus parauberis NCFD 2020]
gi|326906439|gb|EGE53353.1| S4 domain protein [Streptococcus parauberis NCFD 2020]
Length = 264
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 4/215 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + + +L +++ + Y E R+ + D + L I
Sbjct: 39 TDFLNPRQI-DILKSLVAPTELQTFSSNDYYGTEYGRVIIAPAYYQFDQNDFELDLLEIN 97
Query: 73 GNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
N F H LG+++ GI RE +GDI+++ E AQ ++ L +Y + ++ K+G
Sbjct: 98 YNAKFNQLRHSQILGTLINELGIKRESMGDILVE-EGYAQLMISHHLLNYFLGNISKIGR 156
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
SV+ +IP+ L E S + +SLR+D + ++ K+SRS+ + I + V+VN+
Sbjct: 157 ASVTLKKIPINQLIKEANEMTSTDILVSSLRIDLIMASVIKISRSQAMKFIESEKVKVNY 216
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
VT+ L GD++SV G GR KI N K
Sbjct: 217 RKVTRTSDNLALGDMISVRGYGRFKIESDNGLSKN 251
>gi|325977748|ref|YP_004287464.1| hypothetical protein SGGBAA2069_c05480 [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|386337259|ref|YP_006033428.1| S4 RNA-binding domain-containing protein [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|325177676|emb|CBZ47720.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334279895|dbj|BAK27469.1| S4 RNA-binding domain-containing protein [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 263
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 9/232 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+ARR +DFL P + + + V+ YP AE RL V P+
Sbjct: 25 LARRVEETYAYALTDFLNPRQVDIAKSVIGNRGLHYFVSSDYYP-AEYARLIVA-PDYYE 82
Query: 61 SDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVP 116
+P+ + L + N F +H +G++L GI R IGDI++ E G AQ LV
Sbjct: 83 FNPEDFELILLEVNYNSKFNQLTHSQIMGTLLHKLGIKRTVIGDILV--ESGYAQLLVTQ 140
Query: 117 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 176
+ADY ++ K+ SVS IPL L ++ + +S+R+D + + KLSRS
Sbjct: 141 NMADYFRANVTKIAKASVSLKEIPLEQLIAGEKDSRQLDIMVSSMRMDKVLATVLKLSRS 200
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGK 227
+ V LI V++N+ V + L+ GD++SV G GR I E T+ GK
Sbjct: 201 QAVQLIETDKVKLNYQIVDRASEMLQVGDLISVRGFGRFSILSENGLTKNGK 252
>gi|333905370|ref|YP_004479241.1| hypothetical protein STP_1121 [Streptococcus parauberis KCTC 11537]
gi|333120635|gb|AEF25569.1| hypothetical protein STP_1121 [Streptococcus parauberis KCTC 11537]
gi|456371347|gb|EMF50243.1| hypothetical protein SPJ2_1063 [Streptococcus parauberis KRS-02109]
gi|457094971|gb|EMG25466.1| hypothetical protein SPJ1_0877 [Streptococcus parauberis KRS-02083]
Length = 264
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 4/215 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + + +L +++ + Y E R+ + D + L I
Sbjct: 39 TDFLNPRQI-DILKSLVAPTELQTFSSNDYYGTEYGRVIIAPAYYQFDQNDFELDLLEIN 97
Query: 73 GNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
N F H LG+++ GI RE +GDI+++ E AQ ++ L +Y + ++ K+G
Sbjct: 98 YNAKFNQLRHSQILGTLINELGIKRESMGDILVE-EGYAQLMISHHLLNYFLGNISKIGR 156
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
SV+ +IP+ L E S + +SLR+D + ++ K+SRS+ + I + V+VN+
Sbjct: 157 ASVTLKKIPINQLIKEANEMTSTDILVSSLRIDLIMASVIKISRSQAMKFIESEKVKVNY 216
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
VT+ L GD++SV G GR KI N K
Sbjct: 217 RKVTRTSDNLALGDMISVRGYGRFKIESDNGLSKN 251
>gi|225572136|ref|ZP_03781000.1| hypothetical protein RUMHYD_00430 [Blautia hydrogenotrophica DSM
10507]
gi|225040402|gb|EEG50648.1| S4 domain protein [Blautia hydrogenotrophica DSM 10507]
Length = 254
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 124/246 (50%), Gaps = 15/246 (6%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A RA +R VL++DFL L + + V GGY AER +++ P+AL+
Sbjct: 14 LASRAYNRDIVLYTDFLNLDELHKIHSLISGSLPVTVCTFGGYDLAER-QMAAFLPDALS 72
Query: 61 SDPDIVAALSITGNFGFQPCS--------HGDFLGSILGTGIAREKIGDIILQGEKGAQF 112
+ + + I QP S H D+LG++L G+ R +GD+++ E GA
Sbjct: 73 YLMEEILSYPIVC-LKIQPLSLKFSEKLSHRDYLGALLNLGLERSMLGDLLID-ETGAYC 130
Query: 113 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP-PRTKSFKTIEASLRVDALASAGF 171
+A ++ +L +V + +V ++ + +E P P+ + + S+R+D L + F
Sbjct: 131 FCKETMAGFIQDNLTRVRHTAVLTVQV--MEMEELPQPKFREIQGTVPSIRLDVLIALAF 188
Query: 172 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
SRS++ I G V VN +T NG T R D++SV KGR +I T+KG++ V
Sbjct: 189 GESRSRITPFIEGGKVFVNGRQITSNGYTPREKDLISVRQKGRFIYEQILTQTKKGRYRV 248
Query: 231 ELIQYL 236
+ +YL
Sbjct: 249 SVKRYL 254
>gi|228902403|ref|ZP_04066557.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 4222]
gi|228966851|ref|ZP_04127895.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402564759|ref|YP_006607483.1| S4 domain-containing protein [Bacillus thuringiensis HD-771]
gi|423359066|ref|ZP_17336569.1| hypothetical protein IC1_01046 [Bacillus cereus VD022]
gi|423561697|ref|ZP_17537973.1| hypothetical protein II5_01101 [Bacillus cereus MSX-A1]
gi|434377001|ref|YP_006611645.1| S4 domain-containing protein [Bacillus thuringiensis HD-789]
gi|228792950|gb|EEM40508.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228857147|gb|EEN01653.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 4222]
gi|401084938|gb|EJP93184.1| hypothetical protein IC1_01046 [Bacillus cereus VD022]
gi|401201954|gb|EJR08819.1| hypothetical protein II5_01101 [Bacillus cereus MSX-A1]
gi|401793411|gb|AFQ19450.1| S4 domain-containing protein [Bacillus thuringiensis HD-771]
gi|401875558|gb|AFQ27725.1| S4 domain-containing protein [Bacillus thuringiensis HD-789]
Length = 255
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+R + +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + + +L + +E KS +SLR+D + + LSR K
Sbjct: 139 YIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 195
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ I NG V+VNW V + GD+ SV G GR K+ + T++ K+ +
Sbjct: 196 VQPFIKNGLVKVNWKIVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|218899051|ref|YP_002447462.1| S4 domain-containing protein [Bacillus cereus G9842]
gi|218545304|gb|ACK97698.1| S4 domain protein [Bacillus cereus G9842]
Length = 255
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+R + +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALIYPDYLKLN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + + +L + +E KS +SLR+D + + LSR K
Sbjct: 139 YIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 195
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ I NG V+VNW V + GD+ SV G GR K+ + T++ K+ +
Sbjct: 196 VQPFIKNGLVKVNWKIVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|75763514|ref|ZP_00743226.1| RNA binding protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74488996|gb|EAO52500.1| RNA binding protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 255
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+R + +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSXGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + + +L + +E KS +SLR+D + + LSR K
Sbjct: 139 YIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 195
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ I NG V+VNW V + GD+ SV G GR K+ + T++ K+ +
Sbjct: 196 VQPFIKNGLVKVNWKIVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|196035794|ref|ZP_03103196.1| S4 domain protein [Bacillus cereus W]
gi|218905027|ref|YP_002452861.1| S4 domain-containing protein [Bacillus cereus AH820]
gi|195991443|gb|EDX55409.1| S4 domain protein [Bacillus cereus W]
gi|218535821|gb|ACK88219.1| S4 domain protein [Bacillus cereus AH820]
Length = 255
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + D+ G +AER R ++ +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALIYPDYLVVN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PLIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|228928946|ref|ZP_04091978.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228947617|ref|ZP_04109907.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228812137|gb|EEM58468.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228830753|gb|EEM76358.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 241
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + D+ G +AER R ++ +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALIYPDYLVVN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 125 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 184 PLIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|317058533|ref|ZP_07923018.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313684209|gb|EFS21044.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
Length = 257
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 12/230 (5%)
Query: 12 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD-----PDIV 66
LH + +L +K +KAV GGY A R R+ PE L D++
Sbjct: 34 LHQQSVAQAILHRE----KKRQRIKAVFWGGYEGAMR-RILFFLPEYLEEHSYETFEDVL 88
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
L +T +H D+LG+ G G+ RE +GDI+++ E GA +V+ E+ L+
Sbjct: 89 GVLEVTKLDKNLSLNHRDYLGAFTGLGLKRETMGDILVR-ENGADLIVLKEMIPILLEEY 147
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
VG SV L L + K + ASLR+D + F LSR++ I G
Sbjct: 148 CSVGKSSVQVQEKSLKKLIFVEENQKKERGTVASLRLDNVLCEIFNLSRTQAQEWIQKGS 207
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
V VN+ KN + + GDI+ + G G+ KI E S T+K K + I+Y
Sbjct: 208 VYVNYVEKYKNESGIEAGDIIVLRGMGKAKIEETGSLTKKNKVPIYYIKY 257
>gi|300361463|ref|ZP_07057640.1| S4 domain protein [Lactobacillus gasseri JV-V03]
gi|300354082|gb|EFJ69953.1| S4 domain protein [Lactobacillus gasseri JV-V03]
Length = 265
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 9/229 (3%)
Query: 8 RREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSV-GHPEALTSDP 63
+ E + +DFL P + +E + +L GG+ AE+ RL + +A
Sbjct: 34 KNEPILTDFLNPREQYIFREIVGGYAQLYSF-----GGFSNAEKKRLLLCDWIQAYEPSM 88
Query: 64 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 123
+ I + +H LG + GI + GDII QF V EL +Y +
Sbjct: 89 FKITLFEIAYPHKWAKLTHSQILGVLTHLGIKLDTFGDIINDENGTWQFFVKTELKNYFL 148
Query: 124 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 183
+ +VG V PL + + +K I SLR+DA+ SA LSRS++ +I
Sbjct: 149 EQVTRVGRTKVKLHEFPLSKVLVQEDDSKELSVITISLRLDAVVSAVTNLSRSQVKKMIE 208
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+G+V++NW V ++ + D++S+ GR +I + +T+KGK +E+
Sbjct: 209 DGEVKLNWHLVAQSNIIVSVQDMLSIRHYGRYEIINLTTTKKGKKRLEI 257
>gi|228909724|ref|ZP_04073547.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 200]
gi|228850013|gb|EEM94844.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 200]
Length = 255
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
+R + +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 22 KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + + +L + +E KS +SLR+D + + LSR K
Sbjct: 139 YIEMNLQAIGKVKVSLSAVQGEQILQI-HEMWGEKSGTV--SSLRLDVMLAEMLHLSRQK 195
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ I NG V+VNW V + GD+ SV G GR K+ + T++ K+ +
Sbjct: 196 VQPFIKNGLVKVNWKIVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|227893342|ref|ZP_04011147.1| ribosomal protein S4e [Lactobacillus ultunensis DSM 16047]
gi|227864757|gb|EEJ72178.1| ribosomal protein S4e [Lactobacillus ultunensis DSM 16047]
Length = 266
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 9/229 (3%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 65
+ E++ +DFL P K +++ D GGYP AE+ R+ + E L+ P
Sbjct: 34 KHELILTDFLDPG--KRAILKTIVGNDAFTQEYGGYPNAEKKRVYLSE-EWLSLRPSDYQ 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ I F +H LG++ +GI + GDI+ G+ QFL EL ++
Sbjct: 91 IQPYEIEYPQKFMQINHSAILGTLANSGINTDTFGDILTDGKGKWQFLAKKELTEFFEEQ 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLIS 183
+ ++G V P+ E P S + E AS+R+DA+ S K SR ++ +I+
Sbjct: 151 ITRIGKAQVKLK--PITFKEILIPEDDSVERTEIMASMRIDAILSGISKQSRGQIQKMIT 208
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+ V++NW + + ++ D++S+ GRI I ++++TRKGK+ V L
Sbjct: 209 SHLVKLNWHDIADSNIMVKENDVLSLRHFGRILIEDVSATRKGKYKVVL 257
>gi|311029944|ref|ZP_07708034.1| RNA binding protein [Bacillus sp. m3-13]
Length = 258
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 3/219 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + DVK GG AER R + P + D + A ++
Sbjct: 35 TDFLDPREQEIVKSVVGNNEDVKLAFHGGANGAERKRALLYPPYLEPTAEDFGLKAYDLS 94
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F H LGS++G G+ R K GDI + Q ++ E++ ++ L++VG V
Sbjct: 95 YPEKFVKIEHRQVLGSLMGIGLKRSKFGDIYFH-DSSIQIVLSAEVSAFVEMQLQEVGKV 153
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
VS +PL LE + T ASLR+D + ++ + LSR K LI V++NW
Sbjct: 154 KVSLNELPLENLESTETSWEEASTTAASLRLDVMIASIYNLSRQKAQLLIGAKKVKINWK 213
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
V + + GDI+SV G GR K+ ++ T+K K+ +
Sbjct: 214 LVEQTAFECQEGDILSVRGFGRSKLLTVDGKTKKDKWRI 252
>gi|431794691|ref|YP_007221596.1| hypothetical protein Desdi_2788 [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784917|gb|AGA70200.1| hypothetical protein Desdi_2788 [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 265
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 107/203 (52%), Gaps = 13/203 (6%)
Query: 40 QGGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 95
+GG P AER R G + + S+ ++ A + + H LGS++G G+
Sbjct: 66 EGGLPDAERARFLMVEDAGMLDQVASEVKVIRAKPLDPRGTME---HRQILGSLMGMGLK 122
Query: 96 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP--RTKS 153
R+ IGDI + GE + V +AD L++ +K G + ++ L+ E P + +
Sbjct: 123 RDVIGDIRV-GEHCSFVAVAHGIADVLLSQWDKAGRERI---QVELVEGNQEIPAEQGEE 178
Query: 154 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 213
++ AS RVDA+AS+ F +SRS LI G V+ N V+K ++ GDI+S G G
Sbjct: 179 WRITVASSRVDAVASSSFNVSRSTFQELIQQGKVKRNDLVVSKPDLEVKPGDILSCRGYG 238
Query: 214 RIKIGEINSTRKGKFAVELIQYL 236
RI++ E TRKG+ A +I+Y+
Sbjct: 239 RIRLVESTGTRKGRIAWSIIRYI 261
>gi|375008102|ref|YP_004981735.1| hypothetical protein [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359286951|gb|AEV18635.1| hypothetical protein GTCCBUS3UF5_13210 [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 257
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
+DFL P ++ +A DV+A GG P ER R+ + P + D +
Sbjct: 34 TDFLDP----REQQIVQSIAGGAEDVRAFFFGGAPFVERKRVFLAPPYIDPEEEDYGIVL 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ-GEKGAQFLVVPELADYLITSLE 127
++ F H D LG+++ G+ R K GDI+++ GE QF V E+ADY+ +E
Sbjct: 90 FAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILIRDGE--IQFFVAAEVADYVRLHVE 147
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+G V+ +PL A + +SLR+DA+ + F+L+R K L+ +G V
Sbjct: 148 TIGKAPVALEPLPLSAAMPLAETWEEGTVTVSSLRLDAVLAQAFRLAREKARALVESGLV 207
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+VNW V K GD++S G GR K+ + T+K ++ + L
Sbjct: 208 KVNWKVVDKPDFLCGPGDVLSARGFGRCKLFSVEGMTKKERWRIRL 253
>gi|429204845|ref|ZP_19196126.1| RNA binding protein [Lactobacillus saerimneri 30a]
gi|428146707|gb|EKW98942.1| RNA binding protein [Lactobacillus saerimneri 30a]
Length = 264
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 6/223 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
++FL P + + + + DV+ GGY AER R ++ +PE T ++ D V L I
Sbjct: 36 TEFLDPRMQYIAQSLVGQRDDVRVSFFGGYANAERKR-ALFYPEYFTPTEADFKVVPLEI 94
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +HG LG+ + G+ R +GDII G++ Q LV +LA YL+ +++VG
Sbjct: 95 GYPQKFSQLAHGQILGTFVNAGLDRNVLGDIITDGQRW-QILVNQDLAAYLVGQIDRVGK 153
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+ V ++ L L + +S R+D++ + + +SR +LI V +N
Sbjct: 154 IKVRLQQLSLADLLTPQADDAELMVLNLSSSRLDSVIAGAYNISRKSAKDLIKEKRVHLN 213
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
W V K + DI+SV GRIK+G + TRK K +E+
Sbjct: 214 WMMVEKPDLEIGEHDILSVRRYGRIKVGPVLGITRKDKIRLEV 256
>gi|311068062|ref|YP_003972985.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus atrophaeus 1942]
gi|419823957|ref|ZP_14347490.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus atrophaeus C89]
gi|310868579|gb|ADP32054.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus atrophaeus 1942]
gi|388471994|gb|EIM08784.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus atrophaeus C89]
Length = 258
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 9/222 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ---GGYPQAERCRLSVGHPEALTSDPDI-VAAL 69
+DFL P +E ++A + +V GGY AER R + A + D + A
Sbjct: 35 TDFLDP---REQVIAASVIGQADSVGLALFGGYDGAERKRALLYPDYANPEETDFGLQAF 91
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ F H LGS++G G+ R+K GD++ E Q +V E AD++ L +
Sbjct: 92 EVHYPEKFVSIDHRSLLGSLMGIGLKRQKFGDLVF-AESAVQLIVTAETADFVAGQLTQA 150
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
G V+ +I L L+ + +SLR+DA+ ++ + SR K + L+ NG V+V
Sbjct: 151 GKAKVNLEKISLSDLQIPARDVEIRDDTVSSLRLDAVCASMSRQSRQKALTLVKNGLVKV 210
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
NW V L GD++S+ G GR + +I T+K K+ V
Sbjct: 211 NWKVVEDPSYQLAEGDMLSIRGFGRSSLTKIEGKTKKDKWRV 252
>gi|282882016|ref|ZP_06290657.1| RNA-binding S4 domain-containing protein [Peptoniphilus lacrimalis
315-B]
gi|281298046|gb|EFA90501.1| RNA-binding S4 domain-containing protein [Peptoniphilus lacrimalis
315-B]
Length = 258
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 11/222 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS-DPDIVAALSIT 72
SDFL P L + L L D+ GGY E +++ +P L + + A+
Sbjct: 41 SDFLNPHELSLAKSILNSL-DIGYSFDGGYDDYEYGVVNM-YPSFLHGPKSESICAMKFP 98
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
G + H D LGS++G GI R KIGDI++ G++ F V E+ D+++ +LEK+ N
Sbjct: 99 TIVGIK---HKDVLGSLIGLGIDRRKIGDILI-GKEFTYFFVKIEIKDFILYNLEKISNY 154
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTI-EASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
+V + + + P + +K I +SLR+D S LSRSK+ ++IS V+VN+
Sbjct: 155 NVKVSLKE--STDVLPIKEYFYKDIVTSSLRLDTFLSQALNLSRSKINDIISKDLVKVNF 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
T K L+ D++SV GRI +I +T+K K+ ++
Sbjct: 213 TPENKVSYKLKESDVISVKKYGRIIFHKILKTTKKDKYLCQI 254
>gi|423483488|ref|ZP_17460178.1| hypothetical protein IEQ_03266 [Bacillus cereus BAG6X1-2]
gi|401141039|gb|EJQ48594.1| hypothetical protein IEQ_03266 [Bacillus cereus BAG6X1-2]
Length = 255
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 6/231 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + D+ G P++ER R ++ +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDIAVRFDGVMPESERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ +L+ +G + V+ + I + + + +SLR+D L + +SR K+
Sbjct: 139 YIEMNLQSIGKMKVTLSPIQVEQILQVSEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 198
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 199 LIKNGLVKVNWKTVEQTSYECYPGDVYSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|331091119|ref|ZP_08339961.1| hypothetical protein HMPREF9477_00604 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405341|gb|EGG84877.1| hypothetical protein HMPREF9477_00604 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 251
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 120/241 (49%), Gaps = 9/241 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
++R A + V +SDFL L + + GGY +ER ++ P+AL
Sbjct: 15 LSRVAYQKGIVTYSDFLNLNELNILHTTPKNEFFTQYETFGGYSDSER-QMVAFLPDALY 73
Query: 61 SD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
P V +S + SH D+LG+IL GI R K+GDI+L G +L V E
Sbjct: 74 YAHFYPIKVLKISPLQKKFAESLSHRDYLGAILNLGIDRCKLGDILLID--GDAYLFVQE 131
Query: 118 -LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 176
LAD++ +L ++ + SV Y P + K AS+R+D+L S F SRS
Sbjct: 132 SLADFICRNLTRIRHTSVYVEVEDEQTFSYTPA-IEEIKGTVASVRLDSLLSLVFPASRS 190
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVELIQY 235
KLV LI G V VN +T N ++ DIVSV GR + G ++ T+KG++ V L +Y
Sbjct: 191 KLVPLIEGGRVFVNGKLITTNSYNVKENDIVSVRKLGRFRYKGVLSQTKKGRYYVLLEKY 250
Query: 236 L 236
+
Sbjct: 251 I 251
>gi|52141591|ref|YP_085238.1| S4 domain-containing protein [Bacillus cereus E33L]
gi|51975060|gb|AAU16610.1| S4 domain protein [Bacillus cereus E33L]
Length = 255
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + D+ G +AER R ++ +P+ L +
Sbjct: 22 KQAAEHHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALIYPDYLVVN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|288553144|ref|YP_003425079.1| putative RNA-binding S4 domain-containing protein [Bacillus
pseudofirmus OF4]
gi|288544304|gb|ADC48187.1| putative RNA-binding S4 domain protein [Bacillus pseudofirmus OF4]
Length = 257
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 97/192 (50%), Gaps = 3/192 (1%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GG +ER R + + D +A SI F +H D LGS++ G+ REK
Sbjct: 61 GGADDSERKRAYLCPSYLVIEQSDFNLAYFSINYPAKFITLTHSDVLGSLMNIGLKREKF 120
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDI++ + Q +V E+AD++ ++EK+G S+ I L L+ + T +
Sbjct: 121 GDIMI-TQDDIQLVVASEIADFVKMNVEKIGKASIDLVPISLEQLKTPEEKWTEEGTTVS 179
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
S+R+D + S + LSR+K+ I G V+VNW ++ GD +SV G GR K+ E
Sbjct: 180 SMRLDVILSEIYNLSRAKVKPYIERGFVKVNWRVTDHVDFLVKEGDYISVRGHGRSKVLE 239
Query: 220 -INSTRKGKFAV 230
+ T+K K +
Sbjct: 240 QLGRTKKDKIRI 251
>gi|222153413|ref|YP_002562590.1| hypothetical protein SUB1286 [Streptococcus uberis 0140J]
gi|222114226|emb|CAR42803.1| conserved hypothetical protein [Streptococcus uberis 0140J]
Length = 263
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 10/228 (4%)
Query: 11 VLH-SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP---DIV 66
+LH +DFL P + E + L ++ + + E R+ + P+ DP DI
Sbjct: 34 LLHVTDFLNPRQI-EIVKILSASMNITCFSSSDHYHTEYGRVILA-PDYYQLDPLDYDI- 90
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ + I+ + F +H LG+++ GI R IGDI++ + AQ +V + Y + +
Sbjct: 91 SLVEISYHSKFNTLTHAQILGTLINELGIKRSMIGDILVH-DGFAQLMVNRQFLHYFLGN 149
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
++K+ VSV+ I L +L +SLR+D L ++ KLSRS+ + L+ +
Sbjct: 150 IQKIARVSVNLKEIDLNSLLLVQKEESLIDITLSSLRIDRLIASVLKLSRSQAIKLVESE 209
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
V+VN+ +TK+ ++ GD+VSV G GR K+ + N T+ GK+ + L
Sbjct: 210 KVKVNYRIITKSSDSIAIGDLVSVRGFGRFKLLQDNGFTKNGKYKITL 257
>gi|422759405|ref|ZP_16813167.1| RNA binding protein [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322412240|gb|EFY03148.1| RNA binding protein [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
Length = 263
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 13/239 (5%)
Query: 1 MARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 57
M R S + +DFL P +LK +L D+K + Y +E R+ V
Sbjct: 25 MINRVDSHYFLEVTDFLNPREITILK----SLVAPTDLKVFSSTDYYPSEYGRVIVVPDY 80
Query: 58 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLV 114
+ D +A + IT F +HG LG+++ GI R +GDI + E G AQ ++
Sbjct: 81 YDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRNLLGDIFV--ETGYAQLMI 138
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 174
+L DY++T++ K+ SVS IPL L + + +SLR+D L + K S
Sbjct: 139 NRQLLDYVLTTISKIARASVSLKEIPLNQLIKSSNDAQLVDIMVSSLRLDRLVATVLKKS 198
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
R++ + LI V+VN+ V K L GD+VS+ G GR + N T+ GK+ + L
Sbjct: 199 RAQAMTLIETDKVKVNYRQVHKVADHLAIGDMVSIRGYGRFTLLTDNGLTKNGKYKLTL 257
>gi|228916535|ref|ZP_04080101.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228935213|ref|ZP_04098039.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228824378|gb|EEM70184.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228843114|gb|EEM88196.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 241
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + D+ G +AER R ++ +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALIYPDYLVVN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 125 YIEMNLQSIGKVKVSLSPVQGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|390630014|ref|ZP_10258004.1| S4 domain-containing protein YlmH [Weissella confusa LBAE C39-2]
gi|390484805|emb|CCF30352.1| S4 domain-containing protein YlmH [Weissella confusa LBAE C39-2]
Length = 261
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 8/224 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
++FL P + + ++K GGY AE R S+ P+ D +AA+ I
Sbjct: 36 TNFLNPRQRYILETLVNQHDELKIAHSGGYTDAESAR-SLIAPDYYDVQQDDFEIAAIRI 94
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H LG+++ G++R+ GDII E Q + ++A ++ +SL+ VG
Sbjct: 95 NYPTKFAELHHSTVLGTLINNGLSRDSFGDIISSEEGDWQIVATEQMARFITSSLDHVGK 154
Query: 132 VSVSCTRIPLLALEYEPPRTK--SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V P++ + P+ + T +SLR+D + + G+ +SR+ L+ G VRV
Sbjct: 155 TKVRFE--PMMLADIVTPQEEWDDINTTVSSLRLDTIVANGYNVSRTHAKELVERGMVRV 212
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVEL 232
NWT + + L D++SV GR+K + E T+K K+ V L
Sbjct: 213 NWTEIDRPDFMLAVNDLISVRRFGRMKLLAENGITKKDKWRVTL 256
>gi|229061503|ref|ZP_04198847.1| RNA-binding S4 domain protein [Bacillus cereus AH603]
gi|229134707|ref|ZP_04263516.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST196]
gi|423367942|ref|ZP_17345374.1| hypothetical protein IC3_03043 [Bacillus cereus VD142]
gi|423489074|ref|ZP_17465756.1| hypothetical protein IEU_03697 [Bacillus cereus BtB2-4]
gi|423494799|ref|ZP_17471443.1| hypothetical protein IEW_03697 [Bacillus cereus CER057]
gi|423498409|ref|ZP_17475026.1| hypothetical protein IEY_01636 [Bacillus cereus CER074]
gi|423511932|ref|ZP_17488463.1| hypothetical protein IG3_03429 [Bacillus cereus HuA2-1]
gi|423518589|ref|ZP_17495070.1| hypothetical protein IG7_03659 [Bacillus cereus HuA2-4]
gi|423598791|ref|ZP_17574791.1| hypothetical protein III_01593 [Bacillus cereus VD078]
gi|423661263|ref|ZP_17636432.1| hypothetical protein IKM_01660 [Bacillus cereus VDM022]
gi|423669472|ref|ZP_17644501.1| hypothetical protein IKO_03169 [Bacillus cereus VDM034]
gi|423674349|ref|ZP_17649288.1| hypothetical protein IKS_01892 [Bacillus cereus VDM062]
gi|228648753|gb|EEL04779.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST196]
gi|228717737|gb|EEL69387.1| RNA-binding S4 domain protein [Bacillus cereus AH603]
gi|401082803|gb|EJP91068.1| hypothetical protein IC3_03043 [Bacillus cereus VD142]
gi|401150892|gb|EJQ58344.1| hypothetical protein IEW_03697 [Bacillus cereus CER057]
gi|401160458|gb|EJQ67836.1| hypothetical protein IEY_01636 [Bacillus cereus CER074]
gi|401160797|gb|EJQ68172.1| hypothetical protein IG7_03659 [Bacillus cereus HuA2-4]
gi|401237061|gb|EJR43518.1| hypothetical protein III_01593 [Bacillus cereus VD078]
gi|401298599|gb|EJS04199.1| hypothetical protein IKO_03169 [Bacillus cereus VDM034]
gi|401301304|gb|EJS06893.1| hypothetical protein IKM_01660 [Bacillus cereus VDM022]
gi|401309900|gb|EJS15233.1| hypothetical protein IKS_01892 [Bacillus cereus VDM062]
gi|402432322|gb|EJV64381.1| hypothetical protein IEU_03697 [Bacillus cereus BtB2-4]
gi|402450193|gb|EJV82027.1| hypothetical protein IG3_03429 [Bacillus cereus HuA2-1]
Length = 255
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 6/231 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + DV G P+AER R ++ +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ +L+ +G + V+ + I + + + +SLR+D L + +SR K+
Sbjct: 139 YIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 198
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI G V+VNW TV + GD+ SV G GR K+ + T++ K+ V
Sbjct: 199 LIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 249
>gi|229092943|ref|ZP_04224076.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-42]
gi|229123411|ref|ZP_04252615.1| RNA-binding S4 domain protein [Bacillus cereus 95/8201]
gi|229186138|ref|ZP_04313307.1| RNA-binding S4 domain protein [Bacillus cereus BGSC 6E1]
gi|228597314|gb|EEK54965.1| RNA-binding S4 domain protein [Bacillus cereus BGSC 6E1]
gi|228660187|gb|EEL15823.1| RNA-binding S4 domain protein [Bacillus cereus 95/8201]
gi|228690447|gb|EEL44231.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-42]
Length = 241
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + D+ G +AER R ++ +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALIYPDYLVVN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 125 YIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|56419669|ref|YP_146987.1| hypothetical protein GK1134 [Geobacillus kaustophilus HTA426]
gi|56379511|dbj|BAD75419.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 257
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
+DFL P ++ +A DV+A GG P ER R+ + P + D +
Sbjct: 34 TDFLDP----REQQIVQSIAGGAEDVRAFFFGGAPFVERKRVFLAPPYIDPEEEDYGIVL 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ-GEKGAQFLVVPELADYLITSLE 127
++ F H D LG+++ G+ R + GDI+++ GE QF V E+ADY+ +E
Sbjct: 90 FAVRYPAKFVSLEHRDVLGALMSLGLRRGEFGDILIRDGE--IQFFVAAEVADYVRLHVE 147
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+G V+ +PL A + +SLR+DA+ + F+L+R K L+ +G V
Sbjct: 148 TIGKAPVALEPLPLSAAMPLAETWEEGTVTVSSLRLDAVLAQAFRLAREKARALVESGLV 207
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
+VNW V K GD++S G GR K+ + T+K ++ V++
Sbjct: 208 KVNWKVVDKPDFLCGPGDVLSARGFGRCKLFSVEGPTKKERWLVQI 253
>gi|49478438|ref|YP_037959.1| S4 domain-containing protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329994|gb|AAT60640.1| S4 domain protein [Bacillus thuringiensis serovar konkukian str.
97-27]
Length = 255
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + D+ G AER R ++ +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSHAERKR-ALIYPDYLVVN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|386737720|ref|YP_006210901.1| S4 domain-containing protein [Bacillus anthracis str. H9401]
gi|384387572|gb|AFH85233.1| S4 domain protein [Bacillus anthracis str. H9401]
Length = 241
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + D+ G +AER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI-YPDYLVVN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 66 EEEFQVEGLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 124
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 125 YIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 183
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 184 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 235
>gi|229013082|ref|ZP_04170247.1| RNA-binding S4 domain protein [Bacillus mycoides DSM 2048]
gi|228748336|gb|EEL98196.1| RNA-binding S4 domain protein [Bacillus mycoides DSM 2048]
Length = 241
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 6/231 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + DV G P+AER R ++ +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALIYPDYLELN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 124
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ +L+ +G + V+ + I + + + +SLR+D L + +SR K+
Sbjct: 125 YIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 184
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI G V+VNW TV + GD+ SV G GR K+ + T++ K+ V
Sbjct: 185 LIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 235
>gi|325956507|ref|YP_004291919.1| cell-division protein [Lactobacillus acidophilus 30SC]
gi|385817397|ref|YP_005853787.1| cell-division protein [Lactobacillus amylovorus GRL1118]
gi|325333072|gb|ADZ06980.1| cell-division protein [Lactobacillus acidophilus 30SC]
gi|327183335|gb|AEA31782.1| cell-division protein [Lactobacillus amylovorus GRL1118]
Length = 266
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 9/229 (3%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-- 65
+ E + +DFL P K ++ D GGY AE+ R+ + E + PD
Sbjct: 34 KHESILTDFLDPA--KRDILKTIVGNDAFIQEYGGYSDAEKKRVFLSE-EWVNLRPDAYQ 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ I F +H LG++ +GI + GDII G QF ELAD+
Sbjct: 91 IQPYEIDYPQKFIQINHSAVLGTLANSGIDTDTFGDIITDGNGKWQFFAKKELADFFEEQ 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLIS 183
++++G V P+ E P S + E AS+R+DA+ S K SR ++ +I+
Sbjct: 151 IDRIGRAQVKLK--PITFKEVLVPEDDSSEKTEIVASMRIDAVLSGISKQSRGQIQKMIN 208
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+ V++NW V + ++ D++S+ GRI I ++++TRKGK+ V L
Sbjct: 209 SQLVKLNWHDVIDSNIMVKENDVLSLRHFGRILIEDVSATRKGKYKVVL 257
>gi|118479118|ref|YP_896269.1| S4 domain-containing protein [Bacillus thuringiensis str. Al Hakam]
gi|167636417|ref|ZP_02394716.1| S4 domain protein [Bacillus anthracis str. A0442]
gi|170688819|ref|ZP_02880022.1| S4 domain protein [Bacillus anthracis str. A0465]
gi|196038619|ref|ZP_03105927.1| S4 domain protein [Bacillus cereus NVH0597-99]
gi|196045924|ref|ZP_03113153.1| S4 domain protein [Bacillus cereus 03BB108]
gi|225865879|ref|YP_002751257.1| S4 domain protein [Bacillus cereus 03BB102]
gi|254683393|ref|ZP_05147253.1| S4 domain protein [Bacillus anthracis str. CNEVA-9066]
gi|254721431|ref|ZP_05183220.1| S4 domain protein [Bacillus anthracis str. A1055]
gi|254739815|ref|ZP_05197508.1| S4 domain protein [Bacillus anthracis str. Kruger B]
gi|301055388|ref|YP_003793599.1| RNA-binding S4 domain-containing protein [Bacillus cereus biovar
anthracis str. CI]
gi|376267794|ref|YP_005120506.1| hypothetical protein bcf_19360 [Bacillus cereus F837/76]
gi|421639653|ref|ZP_16080244.1| S4- like RNA binding domain protein [Bacillus anthracis str. BF1]
gi|423550354|ref|ZP_17526681.1| hypothetical protein IGW_00985 [Bacillus cereus ISP3191]
gi|118418343|gb|ABK86762.1| S4 domain protein [Bacillus thuringiensis str. Al Hakam]
gi|167528159|gb|EDR90946.1| S4 domain protein [Bacillus anthracis str. A0442]
gi|170667174|gb|EDT17934.1| S4 domain protein [Bacillus anthracis str. A0465]
gi|196023364|gb|EDX62042.1| S4 domain protein [Bacillus cereus 03BB108]
gi|196030342|gb|EDX68941.1| S4 domain protein [Bacillus cereus NVH0597-99]
gi|225787031|gb|ACO27248.1| S4 domain protein [Bacillus cereus 03BB102]
gi|300377557|gb|ADK06461.1| RNA-binding S4 domain protein [Bacillus cereus biovar anthracis
str. CI]
gi|364513594|gb|AEW56993.1| Hypothetical protein, contains S4- like RNA binding domain
[Bacillus cereus F837/76]
gi|401189970|gb|EJQ97020.1| hypothetical protein IGW_00985 [Bacillus cereus ISP3191]
gi|403393318|gb|EJY90563.1| S4- like RNA binding domain protein [Bacillus anthracis str. BF1]
Length = 255
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + D+ G +AER R ++ +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALIYPDYLVVN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|410458071|ref|ZP_11311835.1| RNA-binding S4 domain-containing protein [Bacillus azotoformans LMG
9581]
gi|409931896|gb|EKN68870.1| RNA-binding S4 domain-containing protein [Bacillus azotoformans LMG
9581]
Length = 257
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 5/219 (2%)
Query: 15 DFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSIT 72
DF P + + +VK GGY QAER R L + E D DIV SI
Sbjct: 35 DFYDPREIDIVQRIIGSKEEVKCAFWGGYDQAERKRAILYPEYYEVQNEDFDIVV-FSIN 93
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F H LGS +G G+ R K GDII+ + AQ +V ++A+Y+ ++VG
Sbjct: 94 FPSKFVTLDHRKVLGSTMGLGLKRSKFGDIIIDKD-AAQIIVASQVAEYVRLHFKQVGKT 152
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+V+ +I + +S+R+D + + F LSR+K++ I N V+VNW
Sbjct: 153 NVTLEQIECENIISMNEEWHEHTCTVSSMRLDVILAEVFNLSRTKVLPYIQNQMVKVNWK 212
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
GD +S+ GR K+ I T+K K+ +
Sbjct: 213 VTDDPSFLCHQGDTLSMRTFGRCKVKRIEGQTKKEKWRI 251
>gi|30263899|ref|NP_846276.1| S4 domain-containing protein [Bacillus anthracis str. Ames]
gi|47529329|ref|YP_020678.1| s4 domain-containing protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186747|ref|YP_029999.1| S4 domain-containing protein [Bacillus anthracis str. Sterne]
gi|65321226|ref|ZP_00394185.1| COG2302: Uncharacterized conserved protein, contains S4-like domain
[Bacillus anthracis str. A2012]
gi|165872308|ref|ZP_02216945.1| S4 domain protein [Bacillus anthracis str. A0488]
gi|167641130|ref|ZP_02399385.1| S4 domain protein [Bacillus anthracis str. A0193]
gi|170708812|ref|ZP_02899248.1| S4 domain protein [Bacillus anthracis str. A0389]
gi|177654925|ref|ZP_02936642.1| S4 domain protein [Bacillus anthracis str. A0174]
gi|190566209|ref|ZP_03019128.1| S4 domain protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227813193|ref|YP_002813202.1| S4 domain-containing protein [Bacillus anthracis str. CDC 684]
gi|229601099|ref|YP_002868133.1| S4 domain protein [Bacillus anthracis str. A0248]
gi|254735937|ref|ZP_05193643.1| S4 domain protein [Bacillus anthracis str. Western North America
USA6153]
gi|254751005|ref|ZP_05203044.1| S4 domain protein [Bacillus anthracis str. Vollum]
gi|254757937|ref|ZP_05209964.1| S4 domain protein [Bacillus anthracis str. Australia 94]
gi|421507439|ref|ZP_15954359.1| S4 domain-containing protein [Bacillus anthracis str. UR-1]
gi|30258543|gb|AAP27762.1| S4 domain protein [Bacillus anthracis str. Ames]
gi|47504477|gb|AAT33153.1| S4 domain protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180674|gb|AAT56050.1| S4 domain protein [Bacillus anthracis str. Sterne]
gi|164711984|gb|EDR17524.1| S4 domain protein [Bacillus anthracis str. A0488]
gi|167510910|gb|EDR86301.1| S4 domain protein [Bacillus anthracis str. A0193]
gi|170126297|gb|EDS95188.1| S4 domain protein [Bacillus anthracis str. A0389]
gi|172080436|gb|EDT65523.1| S4 domain protein [Bacillus anthracis str. A0174]
gi|190563128|gb|EDV17094.1| S4 domain protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227003302|gb|ACP13045.1| S4 domain protein [Bacillus anthracis str. CDC 684]
gi|229265507|gb|ACQ47144.1| S4 domain protein [Bacillus anthracis str. A0248]
gi|401822573|gb|EJT21723.1| S4 domain-containing protein [Bacillus anthracis str. UR-1]
Length = 255
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + D+ G +AER R + +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI-YPDYLVVN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEGLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-EDRAQIVVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L+ +G V VS + + L+ + + T+ +SLR+D + + +SR K+
Sbjct: 139 YIEMNLQSIGKVKVSLSPVKGEKILQIQETWGEKSGTV-SSLRLDVMLAEMLHISRQKVQ 197
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 198 PFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|423522271|ref|ZP_17498744.1| hypothetical protein IGC_01654 [Bacillus cereus HuA4-10]
gi|401176020|gb|EJQ83219.1| hypothetical protein IGC_01654 [Bacillus cereus HuA4-10]
Length = 255
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 6/231 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + DV G P+AER R ++ +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+
Sbjct: 80 KEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-ENRAQIAVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ +L+ +G + V+ + I + + + +SLR+D L + +SR K+
Sbjct: 139 YIEMNLQSIGKMKVTLSPIQVEKVLRVGEKWGEKSGTVSSLRLDVLLAEMMHISRQKVQP 198
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI G V+VNW TV + GD+ SV G GR K+ + T++ K+ V
Sbjct: 199 LIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGRTKRDKWRV 249
>gi|423470111|ref|ZP_17446855.1| hypothetical protein IEM_01417 [Bacillus cereus BAG6O-2]
gi|423558540|ref|ZP_17534842.1| hypothetical protein II3_03744 [Bacillus cereus MC67]
gi|401191808|gb|EJQ98830.1| hypothetical protein II3_03744 [Bacillus cereus MC67]
gi|402437363|gb|EJV69387.1| hypothetical protein IEM_01417 [Bacillus cereus BAG6O-2]
Length = 255
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 6/231 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + DV G P+AER R ++ +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ +L+ +G + V+ + I + + + +SLR+D L + +SR K+
Sbjct: 139 YIEMNLQSIGKMKVTLSPIQVEKVLRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 198
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI G V+VNW TV + GD+ SV G GR K+ + T++ K+ V
Sbjct: 199 LIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 249
>gi|315038055|ref|YP_004031623.1| cell-division protein [Lactobacillus amylovorus GRL 1112]
gi|312276188|gb|ADQ58828.1| cell-division protein [Lactobacillus amylovorus GRL 1112]
Length = 266
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 9/229 (3%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 65
+ E + +DFL P K ++ D GGY AE+ R+ + E + PD
Sbjct: 34 KHESILTDFLDPA--KRDILKTIVGNDAFIQEYGGYSDAEKKRVFLSE-EWVNLRPDDYQ 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ I F +H LG++ +GI + GDII G QF ELAD+
Sbjct: 91 IQPYEIDYPQKFIQINHSAVLGTLANSGIDTDTFGDIITDGNGKWQFFAKKELADFFEEQ 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLIS 183
++++G V P+ E P S + E AS+R+DA+ S K SR ++ +I+
Sbjct: 151 IDRIGRAQVKLK--PITFKEVLVPEDDSSEKTEIVASMRIDAVLSGISKQSRGQIQKMIN 208
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+ V++NW V + ++ D++S+ GRI I ++++TRKGK+ V L
Sbjct: 209 SQLVKLNWHDVIDSNIMVKENDVLSLRHFGRILIEDVSATRKGKYKVVL 257
>gi|406664686|ref|ZP_11072461.1| photosystem II S4 domain protein [Bacillus isronensis B3W22]
gi|405387534|gb|EKB46958.1| photosystem II S4 domain protein [Bacillus isronensis B3W22]
Length = 262
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 13/211 (6%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 70
+DFL P + ES+ +++ D+ +G + +AER R+ + ++ D +A S
Sbjct: 35 TDFLDPRQRFIVESI--VQQSDDLHVFTEGIFEEAERKRMLIAPSYYEPAEADFQIAVYS 92
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F H D LG++L G+ R K GDI L + QF + E++DY+ +L +G
Sbjct: 93 LNYPTKFVQLRHPDVLGALLSIGLDRSKFGDIRL-ADNTVQFAIASEISDYVRANLTSIG 151
Query: 131 NVSVSCTRI----PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
V VS + P + + E +S T+ +S+R+D + + +SR K +LI+ G
Sbjct: 152 KVKVSAEEMDPNTPFI--QNEEQWVESSHTV-SSMRLDVVLATIVNISRQKSQSLINAGK 208
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VNWT L+ GDI+S G GR+K+
Sbjct: 209 VKVNWTVREAVAFELQEGDIISARGYGRLKV 239
>gi|163941637|ref|YP_001646521.1| RNA-binding S4 domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|163863834|gb|ABY44893.1| RNA-binding S4 domain protein [Bacillus weihenstephanensis KBAB4]
Length = 255
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 6/231 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + DV G P+AER R ++ +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVVVRFDGAMPEAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ +L+ +G + V+ + I + + + +SLR+D L + +SR K+
Sbjct: 139 YIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 198
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI G V+VNW TV + GD+ SV G GR K+ + T++ K+ V
Sbjct: 199 LIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 249
>gi|393201812|ref|YP_006463654.1| hypothetical protein SSIL_3085 [Solibacillus silvestris StLB046]
gi|327441143|dbj|BAK17508.1| uncharacterized conserved protein [Solibacillus silvestris StLB046]
Length = 262
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 13/211 (6%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 70
+DFL P + ES+ +++ D+ +G + +AER R+ + ++ D +A S
Sbjct: 35 TDFLDPRQRFIVESI--VQQSDDLHVFTEGIFEEAERKRMLIAPSYYEPAEADFQIAVYS 92
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F H D LG++L G+ R K GDI L + QF + E++DY+ +L +G
Sbjct: 93 LNYPTKFVQLRHPDVLGALLSIGLDRSKFGDIRL-ADNTVQFAIASEISDYVRANLTSIG 151
Query: 131 NVSVSCTRI----PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
V VS + P + + E +S T+ +S+R+D + + +SR K +LI+ G
Sbjct: 152 KVKVSAEEMDPTTPFI--QNEEQWVESSHTV-SSMRLDVVLATIVNISRQKSQSLINAGK 208
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VNWT L+ GDI+S G GR+K+
Sbjct: 209 VKVNWTVREAVAFELQEGDIISARGYGRLKV 239
>gi|261419331|ref|YP_003253013.1| RNA-binding S4 domain-containing protein [Geobacillus sp. Y412MC61]
gi|319766147|ref|YP_004131648.1| RNA-binding S4 domain-containing protein [Geobacillus sp. Y412MC52]
gi|261375788|gb|ACX78531.1| RNA-binding S4 domain protein [Geobacillus sp. Y412MC61]
gi|317111013|gb|ADU93505.1| RNA-binding S4 domain protein [Geobacillus sp. Y412MC52]
Length = 257
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 100/202 (49%), Gaps = 5/202 (2%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
DV+ GG P ER R + P + D + ++ F H D LG+++
Sbjct: 54 DVRVFFFGGAPFVERKRAFLAPPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSL 113
Query: 93 GIAREKIGDI-ILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
G+ R K GDI +L GE QF V E+ADY+ +E +G V+ +PL A
Sbjct: 114 GLRRGKFGDILVLDGE--IQFFVAAEVADYVRLHVETIGKAPVALEPLPLSAAMPLAETW 171
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
+ +SLR+DA+ + F+L+R K L+ +G V+VNW V K GD++S G
Sbjct: 172 EEGTVTVSSLRLDAVLAQAFRLAREKARALVESGLVKVNWKVVDKPDFLCGPGDVLSARG 231
Query: 212 KGRIKIGEINS-TRKGKFAVEL 232
GR K+ + T+K ++ V++
Sbjct: 232 FGRCKLFSVEGPTKKERWLVQI 253
>gi|315304053|ref|ZP_07874473.1| S4 domain-containing protein [Listeria ivanovii FSL F6-596]
gi|313627577|gb|EFR96290.1| S4 domain-containing protein [Listeria ivanovii FSL F6-596]
Length = 258
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 99/201 (49%), Gaps = 5/201 (2%)
Query: 35 VKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
+K GG AER R ++ +P+ T ++ D +A I F +H LG+++
Sbjct: 56 IKVQFFGGVAHAERRR-ALIYPDYYTPTEADFEIALFHIRYPVKFTTLTHQKILGTLMSL 114
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
G+ R+ GDI L + Q LV ++ DYL LEK+G V+V L + P +
Sbjct: 115 GMKRDIFGDI-LNKDTEWQLLVESKMKDYLTLQLEKIGKVNVMLEETDLSEAVFTPTVWE 173
Query: 153 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
+S+R+D + S+ +SR K L+ G V+VNW TV D++S G
Sbjct: 174 EMGLTVSSMRLDVIISSAHHISRQKAKQLVVAGLVKVNWKTVENPDFECEEEDVLSARGY 233
Query: 213 GRIKIGEI-NSTRKGKFAVEL 232
GR+KI EI T+K K VE+
Sbjct: 234 GRVKILEIGGRTKKDKIRVEI 254
>gi|229168638|ref|ZP_04296360.1| RNA-binding S4 domain protein [Bacillus cereus AH621]
gi|228614794|gb|EEK71897.1| RNA-binding S4 domain protein [Bacillus cereus AH621]
Length = 241
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 6/231 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + DV G P+AER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFGGAMPEAERKRALI-YPDYLELN 65
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+
Sbjct: 66 EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 124
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ +L+ +G + V+ + I + + + +SLR+D L + +SR K+
Sbjct: 125 YIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 184
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI G V+VNW TV + GD+ SV G GR K+ + T++ K+ V
Sbjct: 185 LIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 235
>gi|423592106|ref|ZP_17568137.1| hypothetical protein IIG_00974 [Bacillus cereus VD048]
gi|401232239|gb|EJR38741.1| hypothetical protein IIG_00974 [Bacillus cereus VD048]
Length = 255
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 6/231 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + DV G P+AER R ++ +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFGGAMPEAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQ-EDRAQIAVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ +L+ +G + V+ + I + + + +SLR+D L + +SR K+
Sbjct: 139 YIEMNLQSIGKMKVTLSPIQVEKILRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 198
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI G V+VNW TV + GD+ SV G GR K+ + T++ K+ V
Sbjct: 199 LIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 249
>gi|28211284|ref|NP_782228.1| RNA binding protein [Clostridium tetani E88]
gi|28203724|gb|AAO36165.1| RNA binding protein [Clostridium tetani E88]
Length = 258
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 5/221 (2%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
V++++ PP + +++ L +K + G + +AER R+ P+ + P V L
Sbjct: 36 VVYTEEFYPPNIWKAIENLSHHLSIKVYSSGVFKEAER-RMLAFSPDEVWYYP--VDLLK 92
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F P H D++G I+ GI R K+GD IL+ + V L++Y++ +L +G
Sbjct: 93 IENGSKFLPLRHKDYMGGIMSLGIKRYKLGDFILK-DNVCYVAVCQSLSEYIVNNLTSIG 151
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+++ L E + I SLR+D++ ++ LSRSK LI +G V ++
Sbjct: 152 RNPCIVSKLDLFTKELPNYEFEDINIIITSLRMDSVVASLANLSRSKGEELIQSGKVLLD 211
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAV 230
+ TV ++ I+++ G G+ K I EI T +G+ V
Sbjct: 212 YLTVKDKAKVVKPNSIITIRGLGKFKFICEIGETNRGRIKV 252
>gi|347549424|ref|YP_004855752.1| hypothetical protein LIV_2007 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982495|emb|CBW86493.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 258
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + +K GG AER R ++ +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRYITETIIGGYDQIKVQFFGGVAHAERRR-ALIYPDYYTPTEADFEIALFHI 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSEW-QLLVESTMKDYLTLQLEKIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
++V L + P + +S+R+D + S +SR K L+ G V+VNW
Sbjct: 153 INVMLEETDLSEAVFTPTIWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVVAGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+KI EI T+K K VE+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKILEIGGRTKKDKIRVEI 254
>gi|315639612|ref|ZP_07894752.1| S4 domain-containing protein YlmH [Enterococcus italicus DSM 15952]
gi|315484573|gb|EFU75029.1| S4 domain-containing protein YlmH [Enterococcus italicus DSM 15952]
Length = 260
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 16/220 (7%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAALS 70
++FL P + + +D+K GGY QAER R + P+ T + DIV
Sbjct: 36 TEFLDPRQAYILETIVRQQSDLKFEFYGGYEQAERTRCLI-FPDYYTPTQEEFDIVL-FE 93
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F SHG LG+++ +G+ RE GDII G + Q LV E+ +Y+ + K+G
Sbjct: 94 INYPEKFTQLSHGKILGTLVNSGLKREYFGDIISDGSRW-QVLVAKEVQNYIQMQVTKIG 152
Query: 131 NVSVSCTRIPLLALEY---EPPRTKSFK--TIEASLRVDALASAGFKLSRSKLVNLISNG 185
+V+V LL EY P+ + T +S+R+D + + F +SR + LI G
Sbjct: 153 SVNVR-----LLVKEYIDLVSPKDAWLEEATTVSSMRLDTVIANVFSISRQRSKQLIEAG 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
V+VNW + L DIVS+ G GR++I T K
Sbjct: 208 KVKVNWRVAQRPDFMLELLDIVSIRGFGRLQIQRQGGTTK 247
>gi|227529017|ref|ZP_03959066.1| ribosomal protein S4e [Lactobacillus vaginalis ATCC 49540]
gi|227351029|gb|EEJ41320.1| ribosomal protein S4e [Lactobacillus vaginalis ATCC 49540]
Length = 261
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 103/203 (50%), Gaps = 9/203 (4%)
Query: 35 VKAVAQGGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 90
VK + GG+ AE RL S P+A V L + F H +G++L
Sbjct: 58 VKLESFGGWQSAEMRRLLFFPSYYQPQAADF---AVTGLEVDYPQKFAELHHRQIMGTLL 114
Query: 91 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 150
G G+ R GDI+ G++ Q +V ++A ++ ++ VG + V + L L
Sbjct: 115 GEGLERASFGDIVTNGKRW-QVVVTNQMARFVRERIDHVGKIKVKWKPVQLEELIVPEDD 173
Query: 151 TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 210
+ T +SLR+DA+ +AGF SR++ L+ +G V++NW + + ++R D++SV
Sbjct: 174 WEQLSTTVSSLRIDAIIAAGFNYSRNRAKQLLEHGLVQINWEEMQRPDYSVREHDMLSVR 233
Query: 211 GKGRIKIGEINS-TRKGKFAVEL 232
GR+++ ++ S TRK K + L
Sbjct: 234 HAGRLRMDQVGSITRKNKQRITL 256
>gi|227544869|ref|ZP_03974918.1| ribosomal protein S4e [Lactobacillus reuteri CF48-3A]
gi|338204193|ref|YP_004650338.1| S4 domain-containing protein YlmH [Lactobacillus reuteri SD2112]
gi|227185143|gb|EEI65214.1| ribosomal protein S4e [Lactobacillus reuteri CF48-3A]
gi|336449433|gb|AEI58048.1| S4 domain-containing protein YlmH [Lactobacillus reuteri SD2112]
Length = 261
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 4/229 (1%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A S R VL + FL P + + +VK GG+ AE R+ + P
Sbjct: 25 VATAESQYRPVL-TPFLNPRERFIIQTIVNRNNNVKITMYGGWQGAEMQRVLIYPPYYEP 83
Query: 61 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
S D + AL I F H +G+++G G+ R GDI+ G Q +V +A
Sbjct: 84 SIEDFALQALEINYPVKFSELHHRQIMGTLIGEGMERNAFGDILTDGAHW-QVIVTKPMA 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+YL ++E VG + V I A+ T +SLR+D + +AGF SR++
Sbjct: 143 EYLRKNVEHVGQIKVKWIPIATEAVVTPKEEWVPIVTTVSSLRLDVVIAAGFNYSRNRAK 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
LI +G VR+NW + + + D++SV GR++I N T+K K
Sbjct: 203 QLIEHGQVRLNWEEIDRPDYQIVVHDLISVRHGGRLRIDMTNGKTKKDK 251
>gi|374337559|ref|YP_005094264.1| hypothetical protein SMA_0566 [Streptococcus macedonicus ACA-DC
198]
gi|372283664|emb|CCF01857.1| Hypothetical protein, contains S4-like RNA binding domain
[Streptococcus macedonicus ACA-DC 198]
Length = 263
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 99/195 (50%), Gaps = 9/195 (4%)
Query: 38 VAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GI 94
V+ YP AE RL V P+ +P+ + L + N F +H +G++L GI
Sbjct: 62 VSSDYYP-AEYARLIVA-PDYYEFNPEDFELTLLEVNYNSKFNQLTHSQIMGTLLHKLGI 119
Query: 95 AREKIGDIILQGEKG-AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 153
R IGDI++ E G AQ LV +ADY ++ K+ SVS IPL L ++
Sbjct: 120 KRTVIGDILV--ESGYAQLLVKQNMADYFRANVTKIAKASVSLKEIPLEQLIAGEKDSRQ 177
Query: 154 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 213
I +S+R+D + + LSRS+ V LI V++N+ V + L+ GD++SV G G
Sbjct: 178 LDIIVSSMRMDKVLATVLNLSRSQAVQLIETDKVKLNYQIVDRASEMLQVGDLISVRGFG 237
Query: 214 RIKI-GEINSTRKGK 227
R I E T+ GK
Sbjct: 238 RFSILSENGFTKNGK 252
>gi|423098927|ref|ZP_17086635.1| S4 domain protein [Listeria innocua ATCC 33091]
gi|370794754|gb|EHN62517.1| S4 domain protein [Listeria innocua ATCC 33091]
Length = 259
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 95/195 (48%), Gaps = 5/195 (2%)
Query: 41 GGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
GG P AER R + +P+ T ++ D VA I F +H LG+++ G+ R+
Sbjct: 63 GGVPHAERRRALI-YPDYYTPTEADFEVALFHIRYPVKFTTLTHQKILGTLMSLGMKRDI 121
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 158
GDI+ G + Q LV + DYL LEK+G V+V L Y P +
Sbjct: 122 FGDILNNGSEW-QLLVESTMKDYLTLQLEKIGKVNVMLEETDLANAVYAPVVWEEMGLTV 180
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218
+S+R+D + S +SR K L++ G V+VNW TV D++S G GR+K+
Sbjct: 181 SSMRLDVIISNAHHISRQKAKQLVTAGLVKVNWKTVENPDFECEEEDVLSARGYGRVKVL 240
Query: 219 EINS-TRKGKFAVEL 232
T+K K +E+
Sbjct: 241 STGGRTKKDKIRIEI 255
>gi|386317425|ref|YP_006013589.1| RNA binding protein [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|417752513|ref|ZP_12400709.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|417927506|ref|ZP_12570894.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|323127712|gb|ADX25009.1| RNA binding protein [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|333771711|gb|EGL48627.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|340765380|gb|EGR87906.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
Length = 263
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 13/239 (5%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPE 57
M R S + +DFL P + L+ LA D+K + Y +E R+ V
Sbjct: 25 MINRVDSHYLLEVTDFLNP----REITILKSLAAPTDLKVFSSTDYYPSEYGRVIVAPDY 80
Query: 58 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLV 114
+ D +A + IT F +HG LG+++ GI R +GDI + E G AQ ++
Sbjct: 81 YDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFV--ETGYAQLMI 138
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 174
+L Y++T++ K+ SVS IPL L + + +SLR+D L + K S
Sbjct: 139 NRQLLGYVLTTISKIARASVSLKEIPLNQLIKSSNDAQLVDIMVSSLRLDRLVATVLKKS 198
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
R++ + LI V+VN+ V K L GD+VS+ G GR + N T+ GK+ + L
Sbjct: 199 RAQAMTLIETDKVKVNYRQVHKVADHLAIGDMVSIRGYGRFTLLTDNGLTKNGKYKLTL 257
>gi|420155653|ref|ZP_14662511.1| hypothetical protein HMPREF1141_2201 [Clostridium sp. MSTE9]
gi|394758882|gb|EJF41718.1| hypothetical protein HMPREF1141_2201 [Clostridium sp. MSTE9]
Length = 253
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 17/233 (7%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
R S R + + FL+ + L + + GG+ AER P+ L +
Sbjct: 21 RLCSRRSQPVFVGFLSEAEAFSAQGVLRREGFFHYLFWGGFEGAERVMFGA-FPDYLEPE 79
Query: 63 PDIVAALSITGNFGFQPC---SHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
P+ ++T F+ C +H DFLG+++ GI R+ +GD++++ +G FL E+A
Sbjct: 80 PESFPICAVTA--AFRDCDKLTHRDFLGALMALGITRDTVGDLLIEPGRGVLFLR-EEMA 136
Query: 120 DYLITSLEKVGNVSVSCT---RIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSR 175
Y+ T +EK+G V V T PL L +EP F T+ AS R+D + +A ++SR
Sbjct: 137 GYVQTQVEKIGRVGVRLTPGFTEPLPGGLGFEP-----FSTVIASPRLDCVVAAALRISR 191
Query: 176 SKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
K L+ +G V + + ++ GD +SV GKGR + +I T++G+
Sbjct: 192 EKAARLVESGGVLLGGVQIMSVSAAVKDGDRLSVRGKGRFILDQIGPETKRGR 244
>gi|407977672|ref|ZP_11158509.1| hypothetical protein BA1_00690 [Bacillus sp. HYC-10]
gi|407415925|gb|EKF37506.1| hypothetical protein BA1_00690 [Bacillus sp. HYC-10]
Length = 258
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 113/222 (50%), Gaps = 9/222 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI----VAAL 69
+DFL P + ++ ++ + GGY +AER R ++ +P+ L +P I ++
Sbjct: 35 TDFLDPREQFITQSVIQHSDELGIMFFGGYEKAERKR-ALIYPDYL--EPSIQDFELSYF 91
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ F H LGS++GTG+ R+K GD++ + +F+ ++AD++ L V
Sbjct: 92 QVNYAKKFISIEHPKLLGSLIGTGLKRQKFGDLLFLDD-DVKFICTSDVADFVRAQLTHV 150
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
G SVS I ++ +T + +SLR+DA+ +A + SR K L+ NG V+V
Sbjct: 151 GRASVSLEEISQTDIKPVISKTDIKEDTISSLRLDAVCAAVSRQSRQKAQLLVKNGLVKV 210
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
NW T+ GD +SV G GR + I+ T+K KF V
Sbjct: 211 NWKVTEDPSFTIGEGDQLSVRGFGRFSLKTIDGKTKKDKFKV 252
>gi|346722871|ref|YP_001180686.2| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|345106842|gb|ABP67495.2| RNA-binding S4 domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 256
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 19/235 (8%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVGHPEALTSDP------D 64
+SDFL+P K ++ + K + Q GGY +ER L++ L D
Sbjct: 28 YSDFLSPYAQKYAIDIILKGENPYLFYQIWGGYEDSERKVLALSFDSRLEETDFSHFPID 87
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
I+ S T SH LG+ +G G+ R+KIGDI+++ K F V E++ ++ T
Sbjct: 88 IILIKSDT------ILSHRQILGTFIGQGLKRDKIGDILVKENKALVF-VKEEVSLFITT 140
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS---LRVDALASAGFKLSRSKLVNL 181
++++G + + ++ S K I S +RVDA+ S GF +SR +L
Sbjct: 141 HIDRIGRDRIKTEVVNKDDIDISQFIQNSGKRIVCSVPSMRVDAIVSHGFGISREDASDL 200
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
+ V VNW + K ++ GD++SV GR+K+ ++ +T+KG+ ++EL+++
Sbjct: 201 VRQFKVAVNWVYIDKPSYEVKEGDLISVRHHGRLKVEKVLTTTKKGRISIELLRF 255
>gi|251782907|ref|YP_002997210.1| hypothetical protein SDEG_1501 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391537|dbj|BAH81996.1| hypothetical protein SDEG_1501 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 263
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 13/239 (5%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPE 57
M R S + +DFL P + L+ LA D+K + Y +E R+ V
Sbjct: 25 MINRVDSHYLLEVTDFLNP----REITILKSLAVPTDLKVFSSTDYYPSEYGRVIVAPDY 80
Query: 58 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLV 114
+ D +A + IT F +HG LG+++ GI R +GDI + E G AQ ++
Sbjct: 81 YDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFV--ETGYAQLMI 138
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 174
+L Y++T++ K+ SVS IPL L + + +SLR+D L + K S
Sbjct: 139 NRQLLGYVLTTISKIARASVSLKEIPLNQLIKSSNDAQLVDIMVSSLRLDRLVATVLKKS 198
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
R++ + LI V+VN+ V K L GD+VS+ G GR + N T+ GK+ + L
Sbjct: 199 RAQAMTLIETDKVKVNYRQVHKVADHLAIGDMVSIRGYGRFTLLTDNGLTKNGKYKLTL 257
>gi|16801200|ref|NP_471468.1| hypothetical protein lin2134 [Listeria innocua Clip11262]
gi|16414648|emb|CAC97364.1| lin2134 [Listeria innocua Clip11262]
Length = 258
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 95/195 (48%), Gaps = 5/195 (2%)
Query: 41 GGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
GG P AER R + +P+ T ++ D VA I F +H LG+++ G+ R+
Sbjct: 62 GGVPHAERRRALI-YPDYYTPTEADFEVALFHIRYPVKFTTLTHQKILGTLMSLGMKRDI 120
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 158
GDI+ G + Q LV + DYL LEK+G V+V L Y P +
Sbjct: 121 FGDILNNGSEW-QLLVESTMKDYLTLQLEKIGKVNVMLEETDLANAVYAPVVWEEMGLTV 179
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218
+S+R+D + S +SR K L++ G V+VNW TV D++S G GR+K+
Sbjct: 180 SSMRLDVIISNAHHISRQKAKQLVTAGLVKVNWKTVENPDFECEEEDVLSARGYGRVKVL 239
Query: 219 EINS-TRKGKFAVEL 232
T+K K +E+
Sbjct: 240 STGGRTKKDKIRIEI 254
>gi|194468386|ref|ZP_03074372.1| RNA-binding S4 domain protein [Lactobacillus reuteri 100-23]
gi|194453239|gb|EDX42137.1| RNA-binding S4 domain protein [Lactobacillus reuteri 100-23]
Length = 261
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 3/196 (1%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
+VK GG+ AE R+ + P S D + AL I F H +G+++G
Sbjct: 57 NVKITMYGGWQGAEMQRVLIYPPYYEPSIEDFALQALEINYPVKFSELHHRQIMGTLIGE 116
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
G+ R GDI+ G Q +V +A+YL ++E VG + V I A+
Sbjct: 117 GMERNAFGDILTDGAHW-QVIVTKPMAEYLRKNVEHVGRIKVKWIPIATEAVVTPKEEWV 175
Query: 153 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
T +SLR+D + +AGF SR++ LI +G VR+NW + + + D++SV
Sbjct: 176 PIVTTVSSLRLDVVVAAGFNYSRNRAKQLIEHGQVRLNWEEIDRPDYQIVVHDLISVRHG 235
Query: 213 GRIKIGEIN-STRKGK 227
GR++I N T+K K
Sbjct: 236 GRLRIDMTNGKTKKDK 251
>gi|228940986|ref|ZP_04103544.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973917|ref|ZP_04134492.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980506|ref|ZP_04140816.1| RNA-binding S4 domain protein [Bacillus thuringiensis Bt407]
gi|384187958|ref|YP_005573854.1| RNA binding protein [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676273|ref|YP_006928644.1| putative RNA-binding protein YlmH [Bacillus thuringiensis Bt407]
gi|452200339|ref|YP_007480420.1| hypothetical protein H175_ch3960 [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779326|gb|EEM27583.1| RNA-binding S4 domain protein [Bacillus thuringiensis Bt407]
gi|228785783|gb|EEM33787.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818665|gb|EEM64732.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326941667|gb|AEA17563.1| RNA binding protein [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175402|gb|AFV19707.1| putative RNA-binding protein YlmH [Bacillus thuringiensis Bt407]
gi|452105732|gb|AGG02672.1| hypothetical protein H175_ch3960 [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 255
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 115/234 (49%), Gaps = 12/234 (5%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++ + +V +DFL P + M + + D G P AER R + +P+ L +
Sbjct: 22 KQTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDGAVQFGGATPNAERKRALI-YPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ REK GDI+LQ E AQ +V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQ-ENRAQIVVAKEIVS 138
Query: 121 YLITSLEKVGNVSVSCTRIP---LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ +L+ +G V VS + + +L + +E KS +SLR+D + + LSR K
Sbjct: 139 YIEMNLQAIGKVKVSLSAVQGEQILQI-HETWGEKSGTV--SSLRLDVMLAEMLHLSRQK 195
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
+ I NG V+VNW TV + GD+ SV G GR K+ + T++ K+ +
Sbjct: 196 VQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRI 249
>gi|408402039|ref|YP_006860003.1| hypothetical protein GGS_1370 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407968268|dbj|BAM61506.1| hypothetical protein GGS_1370 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 263
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 13/239 (5%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPE 57
M R S + +DFL P + L+ LA D+K + Y +E R+ V
Sbjct: 25 MINRVDSHYLLEVTDFLNP----REITILKSLAVPTDLKVFSSTDYYPSEYGRVIVAPDY 80
Query: 58 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLV 114
+ D +A + IT F +HG LG+++ GI R +GDI + E G AQ ++
Sbjct: 81 YDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFV--ETGYAQLMI 138
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 174
+L Y++T++ K+ SVS IPL L + + +SLR+D L + K S
Sbjct: 139 NWQLLGYVLTTISKIARASVSLKEIPLNQLIKSSNDAQLVDIMVSSLRLDRLVATVLKKS 198
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
R++ + LI V+VN+ V K L GD+VS+ G GR + N T+ GK+ + L
Sbjct: 199 RAQAMTLIETDKVKVNYRQVHKVADHLAIGDMVSIRGYGRFTLLTDNGLTKNGKYKLTL 257
>gi|417006954|ref|ZP_11945226.1| cell division protein [Lactobacillus helveticus MTCC 5463]
gi|328468653|gb|EGF39647.1| cell division protein [Lactobacillus helveticus MTCC 5463]
Length = 266
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 5/227 (2%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 65
+ E + +DFL P K +++ DV GGY AE+ R+ + E + P +
Sbjct: 34 KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYTNAEKKRVYLSE-EWVNLQPSDYL 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ I F +H LG++ +GI + GDII QF EL D+
Sbjct: 91 IQPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENGKWQFFAKKELVDFFEEQ 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
+ ++G V I + + I AS+R+DA+ S+ K SR ++ LI N
Sbjct: 151 ITRIGRAQVKLKEITFKDVLVPEDDSTEKTEIVASMRIDAVLSSISKQSRGQIQKLIENH 210
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
V++NW + + ++ DI+S+ GRI I ++++TRKGK+ V L
Sbjct: 211 LVKLNWHDIADSNIMVKENDILSLRHFGRILIEDVSATRKGKYKVVL 257
>gi|320546327|ref|ZP_08040646.1| S4 domain-containing protein YlmH [Streptococcus equinus ATCC 9812]
gi|320449048|gb|EFW89772.1| S4 domain-containing protein YlmH [Streptococcus equinus ATCC 9812]
Length = 261
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 11/225 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSI 71
+DFL P L+ + L V+ YP AE RL V P+ L D +A L +
Sbjct: 36 TDFLNPRQLEIARSVLGNRGLRYFVSSDYYP-AEYARLLVA-PDYYELNLDDFELALLEV 93
Query: 72 TGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKG-AQFLVVPELADYLITSLEKV 129
N F +H +G++L GI R IGDI++ E G AQ LV + DY ++ K+
Sbjct: 94 KYNSKFNQLTHAQIMGTLLNRLGIKRHIIGDILV--ESGYAQLLVTRNMVDYFRANVTKI 151
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
SV+ IPL L ++ + +S+R+D + + KLSRS+ + L++ V++
Sbjct: 152 AKASVNLKEIPLDNLIVGEKESQQLDIMVSSMRLDKVLATVLKLSRSQAIQLVNAEKVKL 211
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN---STRKGKFAVE 231
N+ ++ + L+ GD++SV G GR I N RK K V+
Sbjct: 212 NYQSIDRPSEILQVGDLISVRGFGRFSILSENGLTKNRKIKLTVD 256
>gi|448237302|ref|YP_007401360.1| putative RNA-binding protein [Geobacillus sp. GHH01]
gi|445206144|gb|AGE21609.1| putative RNA-binding protein [Geobacillus sp. GHH01]
Length = 257
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 5/202 (2%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
DV+ GG P ER R + P + D + ++ F H D LG+++
Sbjct: 54 DVRVFFFGGAPFVERKRAFLAPPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSL 113
Query: 93 GIAREKIGDIILQ-GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
G+ R K GDI+++ GE QF V E+ADY+ +E +G V+ +PL A
Sbjct: 114 GLRRGKFGDILVRDGE--IQFFVAAEVADYVRLHIEMIGKARVALEPLPLSAAMPLAETW 171
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
+ +SLR+DA+ + F+L+R K L+ +G V+VNW V K GD++S G
Sbjct: 172 EEGTVTVSSLRLDAVLAQAFRLAREKARALVESGLVKVNWKVVDKPDFLCGPGDVLSARG 231
Query: 212 KGRIKIGEINS-TRKGKFAVEL 232
GR K+ + T+K ++ V++
Sbjct: 232 FGRCKLFSVEGPTKKERWLVQI 253
>gi|148543830|ref|YP_001271200.1| RNA-binding S4 domain-containing protein [Lactobacillus reuteri DSM
20016]
gi|184153231|ref|YP_001841572.1| hypothetical protein LAR_0576 [Lactobacillus reuteri JCM 1112]
gi|227364734|ref|ZP_03848783.1| ribosomal protein S4e [Lactobacillus reuteri MM2-3]
gi|325682639|ref|ZP_08162156.1| S4 domain protein [Lactobacillus reuteri MM4-1A]
gi|148530864|gb|ABQ82863.1| RNA-binding S4 domain protein [Lactobacillus reuteri DSM 20016]
gi|183224575|dbj|BAG25092.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227070193|gb|EEI08567.1| ribosomal protein S4e [Lactobacillus reuteri MM2-3]
gi|324978478|gb|EGC15428.1| S4 domain protein [Lactobacillus reuteri MM4-1A]
Length = 261
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 3/196 (1%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
+VK GG+ AE R+ + P S D + AL I F H +G+++G
Sbjct: 57 NVKITMYGGWQGAEMQRVLIYPPYYEPSIEDFALQALEINYPVKFSELHHRQIMGTLIGE 116
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
G+ R GDI+ G Q +V +A+YL ++E VG + V I A+
Sbjct: 117 GMERNAFGDILTDGSHW-QVIVTKPMAEYLRKNVEHVGRIKVKWIPIATEAVVTPKEEWV 175
Query: 153 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
T +SLR+D + +AGF SR++ LI +G VR+NW + + + D++SV
Sbjct: 176 PIVTTVSSLRLDVVIAAGFNYSRNRAKQLIEHGQVRLNWEEIDRPDYQIVVHDLISVRHG 235
Query: 213 GRIKIGEIN-STRKGK 227
GR++I N T+K K
Sbjct: 236 GRLRIDMTNGKTKKDK 251
>gi|408356933|ref|YP_006845464.1| hypothetical protein AXY_15700 [Amphibacillus xylanus NBRC 15112]
gi|407727704|dbj|BAM47702.1| hypothetical protein AXY_15700 [Amphibacillus xylanus NBRC 15112]
Length = 260
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 112/222 (50%), Gaps = 5/222 (2%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP--EALTSDPDIVAALS 70
+SDFL P + + K V GG P AER + ++ P E + S+ ++ L+
Sbjct: 33 YSDFLDPREQYIFQNIIGQDEQFKLVFFGGIPNAER-KQAILAPFYEEIDSNSFPISVLT 91
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA-QFLVVPELADYLITSLEKV 129
F H D LG+ L G+ R+K+GD+ + ++G Q +V +++D++I +
Sbjct: 92 TKYPAKFVTIEHRDVLGAFLSLGLLRKKLGDLSIDPDQGIIQLIVSADISDFIIAQFNSI 151
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
N +V IPL + +T +SLR+D + ++ SR++ + LI G V+V
Sbjct: 152 KNANVQFQPIPLSKAIDSKDEWSNHETTVSSLRLDVMIKHIYRFSRTQALELIKKGYVKV 211
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
N+ TV + +GD++S GKGR + +I + T+K + +
Sbjct: 212 NFKTVEDPAFIVESGDMISCRGKGRSRFNDIITLTKKQNYRI 253
>gi|22536662|ref|NP_687513.1| hypothetical protein SAG0483 [Streptococcus agalactiae 2603V/R]
gi|22533501|gb|AAM99385.1|AE014213_24 ylmH protein [Streptococcus agalactiae 2603V/R]
Length = 262
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 7/236 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A+ + + ++FL P K LE+ G Y Q E ++ + PE
Sbjct: 24 LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA-PEYYQ 81
Query: 61 SD-PDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPE 117
D D ++ + I N F +H +G++L G+ R +GDI+++ E AQ LV +
Sbjct: 82 LDMADFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQ 140
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+ ++L+ S+ K+G SV +PL L + I +SLR+D + + K+SR++
Sbjct: 141 MTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQ 200
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 232
LI V+VN+ TV + L GD++SV G GR + + T+ K+ +E+
Sbjct: 201 STKLIEADKVKVNYATVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKLEV 256
>gi|315917373|ref|ZP_07913613.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|313691248|gb|EFS28083.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 257
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 12/230 (5%)
Query: 12 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-----SDPDIV 66
LH + +L +K +KAV GGY A R R+ PE L + D++
Sbjct: 34 LHQQNVAQAILHRE----KKRQRIKAVFWGGYEGAMR-RILFFLPEYLEEYSYETFEDVL 88
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
L +T +H D+LG+ G G+ RE +GDI+++ E GA +V+ E+ L+
Sbjct: 89 GVLEVTKLDKNLSLNHRDYLGAFTGLGLKRETMGDILVR-ENGADLIVLKEMIPILLEEY 147
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
VG V L L + K + ASLR+D + F LSR++ I G
Sbjct: 148 CSVGKSFVQVQEKSLKKLIFVEENQKKERGTVASLRLDNVLCEIFNLSRTQAQEWIQKGS 207
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
V VN+ KN + + GDI+ + G G+ KI E S T+K K + I+Y
Sbjct: 208 VYVNYVEKYKNESGIEAGDIIVLRGMGKAKIEETGSFTKKNKVPIYYIKY 257
>gi|365925132|ref|ZP_09447895.1| RNA binding protein [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420266443|ref|ZP_14768909.1| RNA binding protein [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394425357|gb|EJE98341.1| RNA binding protein [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 261
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 6/235 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
M + A+ R +L ++FL P + + L +D+K G AER R ++ +PE
Sbjct: 25 MTQAATEYRPIL-TEFLNPREVYIAQTLLNTESDLKMKTDGLLQGAERQR-ALFYPEYYE 82
Query: 61 -SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
S+ D ++ + I F H LG++ G+ R IGDI+ GE+ QF+ +
Sbjct: 83 PSEADFELSLIWIKYPTKFATLKHSQILGALTHLGLRRNLIGDIVTDGERW-QFITAANM 141
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
++L +E VG V V + + + + +SLR+D L + + LSR +
Sbjct: 142 VNFLKIQVETVGKVKVHLEEVDKSEIVSPVDEWQGLQVTVSSLRLDTLIAGVYNLSRKHV 201
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+L+S G V +NW + K + DIVSV G GR ++ + ++KGK VEL
Sbjct: 202 KDLLSAGKVVLNWMDIEKPDVEVAEHDIVSVRGYGRFRLKALQGVSKKGKIRVEL 256
>gi|297530699|ref|YP_003671974.1| RNA-binding S4 domain-containing protein [Geobacillus sp. C56-T3]
gi|297253951|gb|ADI27397.1| RNA-binding S4 domain protein [Geobacillus sp. C56-T3]
Length = 257
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 5/202 (2%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
DV+ GG P ER R + P + D + ++ F H D LG+++
Sbjct: 54 DVRVFFFGGAPFVERKRAFLAPPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSL 113
Query: 93 GIAREKIGDIILQ-GEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
G+ R K GDI+++ GE QF V E+ADY+ +E +G V+ +PL A
Sbjct: 114 GLRRGKFGDILVRDGE--IQFFVAAEVADYVRLHVETIGKAPVALEPLPLSAAMPLAETW 171
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
+ +SLR+DA+ + F+L+R K L+ +G V+VNW V K GD++S G
Sbjct: 172 EEGTVTVSSLRLDAVLAQAFRLAREKARALVESGLVKVNWKVVDKPDFLCGPGDVLSARG 231
Query: 212 KGRIKIGEINS-TRKGKFAVEL 232
GR K+ + T+K ++ V++
Sbjct: 232 FGRCKLFSVEGPTKKERWLVQI 253
>gi|254854035|ref|ZP_05243383.1| S4 domain-containing protein [Listeria monocytogenes FSL R2-503]
gi|300765463|ref|ZP_07075444.1| hypothetical protein LMHG_12332 [Listeria monocytogenes FSL N1-017]
gi|404281642|ref|YP_006682540.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC2755]
gi|404287453|ref|YP_006694039.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|258607427|gb|EEW20035.1| S4 domain-containing protein [Listeria monocytogenes FSL R2-503]
gi|300513774|gb|EFK40840.1| hypothetical protein LMHG_12332 [Listeria monocytogenes FSL N1-017]
gi|404228277|emb|CBY49682.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2755]
gi|404246382|emb|CBY04607.1| RNA-binding S4 domain protein [Listeria monocytogenes serotype 7
str. SLCC2482]
Length = 258
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG P AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVPHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+K+ T+K K +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254
>gi|423452799|ref|ZP_17429652.1| hypothetical protein IEE_01543 [Bacillus cereus BAG5X1-1]
gi|401139358|gb|EJQ46920.1| hypothetical protein IEE_01543 [Bacillus cereus BAG5X1-1]
Length = 255
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 114/231 (49%), Gaps = 6/231 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A+ +V +DFL P + M + + DV G P+AER R ++ +P+ L +
Sbjct: 22 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALIYPDYLELN 79
Query: 63 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
+ V L I F H LG+ + G+ R+K GDI+LQ E AQ V E+
Sbjct: 80 EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTRDKCGDILLQ-EDRAQIAVAKEVVS 138
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
Y+ +L+ +G + V+ + I + + + +SLR+D L + +SR K+
Sbjct: 139 YIEMNLQSIGKMKVTLSPIQVEKVLRVGEKWGEKSGTVSSLRLDVLLAEMLHISRQKVQP 198
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
LI G V+VNW TV + GD+ SV G GR K+ + T++ K+ V
Sbjct: 199 LIKGGLVKVNWKTVEQTSYECFPGDVFSVRGYGRSKLFSVEGKTKRDKWRV 249
>gi|402297354|ref|ZP_10817126.1| putative RNA-binding S4 domain-containing protein [Bacillus
alcalophilus ATCC 27647]
gi|401727404|gb|EJT00594.1| putative RNA-binding S4 domain-containing protein [Bacillus
alcalophilus ATCC 27647]
Length = 239
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 13/225 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAAL- 69
+DFL P +LK +++ +++ DV+ GG ER R + P + +D + A
Sbjct: 16 TDFLDPREQEILK-TVVGIDE--DVQLSFFGGRGDIERQRAHLA-PSYIVADEETFACFL 71
Query: 70 -SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
SI F +H D LG+++ G+ REK GDII+ G Q ++ E+A Y+ +L
Sbjct: 72 YSIEYPSKFVTLTHRDILGALMSIGLKREKFGDIIING-TDIQVILAKEVASYVEVNLTS 130
Query: 129 VGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+G +V R+P A LE + TI +SLR+DA+ + +++SRSK+ ++ G V
Sbjct: 131 IGKATVQLKRLPFSAQLELVDSWNERSGTI-SSLRLDAVLAEIYRVSRSKIEPYLAKGYV 189
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVE 231
+VNW V ++ D SV G GR ++ ++ T+K K+ ++
Sbjct: 190 KVNWKVVENGSFQVKATDHFSVRGFGRSQLVSLDGKTKKDKWKIQ 234
>gi|423332889|ref|ZP_17310671.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
gi|337728007|emb|CCC03096.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
Length = 261
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 7/198 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
+VK GG+ AE R+ + P S D + AL I F H +G+++G
Sbjct: 57 NVKITMYGGWQGAEMQRVLIYPPYYEPSIEDFALQALEINYPVKFSELHHRQIMGTLIGE 116
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
G+ R GDI+ G Q +V +A+YL ++E VG + V IP+ P+ +
Sbjct: 117 GMERNAFGDILTDGAHW-QVIVTKPMAEYLRKNVEHVGRIKVKW--IPIATEAVVTPKEE 173
Query: 153 SFK--TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 210
T +SLR+DA+ + GF SR++ LI +G VR+NW + + + D++SV
Sbjct: 174 WIPIVTTVSSLRLDAVIAVGFNYSRNRAKQLIEHGQVRLNWEEIDRPDYQIVVHDLISVR 233
Query: 211 GKGRIKIGEIN-STRKGK 227
GR++I N T+K K
Sbjct: 234 HGGRLRIDMTNGKTKKDK 251
>gi|76787217|ref|YP_329217.1| S4 domain-containing protein [Streptococcus agalactiae A909]
gi|77405577|ref|ZP_00782667.1| ylmH protein [Streptococcus agalactiae H36B]
gi|406709016|ref|YP_006763742.1| S4 domain-containing protein [Streptococcus agalactiae
GD201008-001]
gi|76562274|gb|ABA44858.1| S4 domain protein [Streptococcus agalactiae A909]
gi|77175799|gb|EAO78578.1| ylmH protein [Streptococcus agalactiae H36B]
gi|406649901|gb|AFS45302.1| S4 domain-containing protein [Streptococcus agalactiae
GD201008-001]
Length = 262
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 7/236 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A+ + + ++FL P K LE+ G Y Q E ++ + PE
Sbjct: 24 LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA-PEYYQ 81
Query: 61 SDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPE 117
D D ++ + I N F +H +G++L G+ R +GDI+++ E AQ LV +
Sbjct: 82 LDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQ 140
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+ ++L+ S+ K+G SV +PL L + I +SLR+D + + K+SR++
Sbjct: 141 MTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQ 200
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 232
LI V+VN+ TV + L GD++SV G GR + + T+ K+ +E+
Sbjct: 201 STKLIEADKVKVNYATVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKLEV 256
>gi|395242913|ref|ZP_10419901.1| S4 domain protein [Lactobacillus hominis CRBIP 24.179]
gi|394484733|emb|CCI80909.1| S4 domain protein [Lactobacillus hominis CRBIP 24.179]
Length = 266
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 21/242 (8%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLSVGHPEA 58
+ R ++E + +DF+ P M +++ + + GGY AE+ R A
Sbjct: 28 LFNRLIYQQEPILTDFINP----RQMYIFKEIVGNEAQIYHDGGYKNAEKQR-------A 76
Query: 59 LTSDPDI--------VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA 110
L D + V L I N + +H LG + +G+ GDII E
Sbjct: 77 LLCDWNAPYNLEHFEVQPLQIEYNKKWDKLTHSQILGVLANSGVEISSFGDIINDEEDNW 136
Query: 111 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 170
Q V +L D+ I ++ ++G V I + S + SLR+DA+ ++
Sbjct: 137 QIFVKKDLTDFFIRNITRIGRSKVKLKPISRNEVLNVADDATSKSAVSISLRLDAVIASA 196
Query: 171 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAV 230
+SRS++ I+NG++++NW V ++ + DI+S+ GRI++ +I+ T KGK+ +
Sbjct: 197 ANMSRSQVKESINNGNIKLNWHVVQESNIIVNVYDILSIRHFGRIQLEKISHTSKGKYRL 256
Query: 231 EL 232
E
Sbjct: 257 EF 258
>gi|422419651|ref|ZP_16496606.1| S4 domain-containing protein [Listeria seeligeri FSL N1-067]
gi|313632501|gb|EFR99511.1| S4 domain-containing protein [Listeria seeligeri FSL N1-067]
Length = 258
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + +K GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRYITETVIGGYDQIKVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSEW-QLLVESTMKDYLTLQLEKIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L + P + +S+R+D + S +SR K L+ G V+VNW
Sbjct: 153 VNVMLEETDLSEATFTPTVWEESGLTVSSMRLDVIISNAHHISRQKAKQLVVAGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++SV G GR+KI + T+K K +E+
Sbjct: 213 KTVENPDFECEQEDVLSVRGYGRVKIIQTGGRTKKDKIRIEI 254
>gi|422422742|ref|ZP_16499695.1| S4 domain-containing protein [Listeria seeligeri FSL S4-171]
gi|313637033|gb|EFS02602.1| S4 domain-containing protein [Listeria seeligeri FSL S4-171]
Length = 259
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + +K GG AER R ++ +P+ T ++ D +A I
Sbjct: 36 TDFLDPRQRYITETVIGGYDQIKVQFFGGVAHAERRR-ALIYPDYYTPTEADFEIALFHI 94
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 95 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSEW-QLLVESTMKDYLTLQLEKIGK 153
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L + P + +S+R+D + S +SR K L+ G V+VNW
Sbjct: 154 VNVMLEETDLSEATFTPTVWEESGLTVSSMRLDVIISNAHHISRQKAKQLVVAGLVKVNW 213
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++SV G GR+KI + T+K K +E+
Sbjct: 214 KTVENPDFECEQEDVLSVRGYGRVKIIQTGGRTKKDKIRIEI 255
>gi|323486919|ref|ZP_08092235.1| hypothetical protein HMPREF9474_03986 [Clostridium symbiosum
WAL-14163]
gi|323399782|gb|EGA92164.1| hypothetical protein HMPREF9474_03986 [Clostridium symbiosum
WAL-14163]
Length = 251
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 111/230 (48%), Gaps = 12/230 (5%)
Query: 13 HSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGHPEALTSDPDIVA 67
++DFLT + SM L V + GGY AER C L E I+
Sbjct: 28 YTDFLTLNEQTIFHSMK--RTLPPVTWLMGGGYETAERKIVCFLPSYEDETADLSISILE 85
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
A+ + F + +H DFLG+I+ GI+R IGDI++ E G + ++A +LI L+
Sbjct: 86 AVPASPRFA-EALTHRDFLGAIMNLGISRSCIGDILMN-ENGCFIFCLEKMAPFLIQELK 143
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
V + VSC P P ++ AS R+D++ S FK SRSK + I V
Sbjct: 144 MVRHTQVSCR--PATQALAAAPNCETVSGSVASPRLDSVISLVFKTSRSKTLPFIEGERV 201
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVELIQYL 236
++ G L+ G+I+SV G G+ + G N T+KG+F V +Y+
Sbjct: 202 FIDGRLCISPGRQLKEGEIISVRGLGKFRYTGAGNQTKKGRFFVNAEKYI 251
>gi|354558730|ref|ZP_08977984.1| RNA-binding S4 domain protein [Desulfitobacterium metallireducens
DSM 15288]
gi|353545792|gb|EHC15242.1| RNA-binding S4 domain protein [Desulfitobacterium metallireducens
DSM 15288]
Length = 265
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 5/199 (2%)
Query: 39 AQGGYPQAER-CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 97
AQGG+ +ER C + + L + + L + H LGS++G G+ RE
Sbjct: 65 AQGGFSDSERVCYFLGQNGQDLDQVQNGITLLEVLSTDPHVALEHRQILGSLMGLGLKRE 124
Query: 98 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKT 156
IGDI G +G VV E+ADYL+ G ++ R+ L L +P +
Sbjct: 125 LIGDI-HSGIRGMIVAVVDEIADYLLQEWRMAGRANIRVERVQGELNLREDPGEERRITV 183
Query: 157 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
AS R+DA+ ++GF ++R + I G ++ N ++K +++GD++S G GR++
Sbjct: 184 --ASSRIDAIVASGFNVARGVVQEWIRQGKIKRNDLMISKPDLEVKSGDVISCRGYGRLR 241
Query: 217 IGEINSTRKGKFAVELIQY 235
+ + + TRKG+ +I +
Sbjct: 242 LRDASETRKGRIGWSIIVF 260
>gi|410594162|ref|YP_006950889.1| RNA-binding protein S4 [Streptococcus agalactiae SA20-06]
gi|410517801|gb|AFV71945.1| RNA-binding S4 [Streptococcus agalactiae SA20-06]
Length = 262
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 7/236 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A+ + + ++FL P K LE+ G Y Q E ++ + PE
Sbjct: 24 LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA-PEYYQ 81
Query: 61 SDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPE 117
D D ++ + I N F +H +G++L G+ R +GDI+++ E AQ LV +
Sbjct: 82 LDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQ 140
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+ ++L+ S+ K+G SV +PL L + I +SLR+D + + K+SR++
Sbjct: 141 MTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQ 200
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 232
LI V+VN+ V + L GD++SV G GR + + T+ K+ +EL
Sbjct: 201 STKLIEADKVKVNYAIVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKLEL 256
>gi|421531599|ref|ZP_15977979.1| hypothetical protein M3M_00842 [Streptococcus agalactiae
STIR-CD-17]
gi|403643127|gb|EJZ03915.1| hypothetical protein M3M_00842 [Streptococcus agalactiae
STIR-CD-17]
Length = 262
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 7/236 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A+ + + ++FL P K LE+ G Y Q E ++ + PE
Sbjct: 24 LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA-PEYYQ 81
Query: 61 SDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPE 117
D D ++ + I N F +H +G++L G+ R +GDI+++ E AQ LV +
Sbjct: 82 LDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-ECCAQVLVDSQ 140
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+ ++L+ S+ K+G SV +PL L + I +SLR+D + + K+SR++
Sbjct: 141 MTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQ 200
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 232
LI V+VN+ V + L GD++SV G GR + + T+ K+ +EL
Sbjct: 201 STKLIEADKVKVNYAIVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKLEL 256
>gi|291542659|emb|CBL15769.1| Uncharacterized conserved protein, contains S4-like domain
[Ruminococcus bromii L2-63]
Length = 255
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 15/201 (7%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITG-NFGFQPC---SHGDFLGSILGTGIAR 96
GGY +ER L + E TS I G F F+ C +H DFLGS++ GI R
Sbjct: 63 GGYDDSERKMLGLFFDEPSTS------MFPICGIEFSFRKCDRLTHRDFLGSLMSLGIER 116
Query: 97 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-EYEPPRTKSFK 155
E +GDI+++ + F V EL+DY+ + + KVG V V L L + K+F
Sbjct: 117 ETVGDILVEDGRAVVF-VKAELSDYVKSQISKVGRVGVKVDDADLSKLPQGRGVEEKTF- 174
Query: 156 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215
I +SLR+D + +A KLSR K +I + V VN+ L+ D+ ++ GKG+
Sbjct: 175 -IVSSLRLDNIVAAVCKLSREKTKTVIMSDSVCVNFEETKNVSFNLKENDVFTIRGKGKF 233
Query: 216 KI-GEINSTRKGKFAVELIQY 235
+ G + +T KG+ + +I Y
Sbjct: 234 VLKGILGTTGKGRMRISVIHY 254
>gi|163790530|ref|ZP_02184959.1| S4 domain protein [Carnobacterium sp. AT7]
gi|159874133|gb|EDP68208.1| S4 domain protein [Carnobacterium sp. AT7]
Length = 260
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 17/228 (7%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
++FL P L + K +D+ + GGY AER R + D V I
Sbjct: 36 TNFLDPRQLHIVKTIVGKNSDITIHSFGGYEAAERVRAFICPAYFTPKQEDFEVTICEIR 95
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F SHG LG++L TG+ R+ GDII G + Q V Y+ + +G V
Sbjct: 96 YPTKFASLSHGKVLGTLLSTGLKRDYFGDIISDGSRW-QVFVENSTKSYIEQQVVSIGKV 154
Query: 133 SVSCTR-------IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
+V IP+ E +T+ +S+R+D L S+ FK+SR + +I +G
Sbjct: 155 AVRMEERAYTDILIPIDNWSIEN------QTV-SSMRLDTLVSSVFKISRQRAKQMIESG 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
V++NW +T+ + DIVSV G GR+++ EI T+K K+ ++L
Sbjct: 208 KVKLNWVELTRPDFEIGLLDIVSVRGYGRLQVQEIEGKTKKDKWRLQL 255
>gi|15615110|ref|NP_243413.1| hypothetical protein BH2547 [Bacillus halodurans C-125]
gi|10175167|dbj|BAB06266.1| BH2547 [Bacillus halodurans C-125]
Length = 258
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 11/221 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + + + DV GG AER R + P ++ D + ++
Sbjct: 34 TDFLDPREQEIVDALVGRNDDVSVSFWGGSEHAERKRACLIPPYLELAEEDYGLTLFELS 93
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F H LG+ + G+ REK GDI++ E+ Q +V E+A+++ L VG
Sbjct: 94 YPKKFLTIDHRQVLGACMSLGVKREKFGDILVADER-IQLVVATEIAEFVRLHLTSVGKA 152
Query: 133 SVSCTRI----PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V + L+ E RT + +SLR+DA+ LSR+K L+ G V+
Sbjct: 153 QVEMVELGFEQMLVTTESWHERTATV----SSLRLDAVIGEMLSLSRAKAAELVEKGRVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF 228
VNW V TL+ GD +SV G GR K+ E+ T+K KF
Sbjct: 209 VNWKLVESGALTLQAGDHISVRGFGRHKLLEVEGKTKKDKF 249
>gi|289435369|ref|YP_003465241.1| S4 domain-containing protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171613|emb|CBH28159.1| S4 domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 258
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + +K GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRYITETVIGGYDQIKVQFFGGVAHAERRRALI-YPDYYTPTEVDFEIALFHI 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMRDYLTLQLEKIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L + P + +S+R+D + S +SR K L+ G V+VNW
Sbjct: 153 VNVMLEETDLSEATFTPTVWEESGLTVSSMRLDVIISNAHHISRQKAKQLVVAGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++SV G GR+KI + T+K K +E+
Sbjct: 213 KTVENPDFECEQEDVLSVRGYGRVKIIQTGGRTKKDKIRIEI 254
>gi|345860008|ref|ZP_08812337.1| S4 domain protein [Desulfosporosinus sp. OT]
gi|344326869|gb|EGW38318.1| S4 domain protein [Desulfosporosinus sp. OT]
Length = 265
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 13/220 (5%)
Query: 22 LKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQP 79
++E A+ + + +GG+P+AER R+ VG P T DP ++ + + +
Sbjct: 48 MREWAEAVLRKEHLSFRTEGGFPEAERVRIIVG-PWGETLDPTDADISLIWVRPSDSRAQ 106
Query: 80 CSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG----NVSVS 135
H LGS++G G R+ +GDI G +G E+A +LI + G VS+
Sbjct: 107 LEHRQILGSLMGLGFKRDVLGDI-QAGRRGFYIATTAEIASFLIDHWIQAGREKIEVSLY 165
Query: 136 CTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVT 195
C + + Y +S T+ +S R+DAL + F ++RS + I+ G VR + V+
Sbjct: 166 CEKPDV----YPDLGEESRITVNSS-RIDALIANAFGVARSNALQWITQGKVRRDGLVVS 220
Query: 196 KNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
K +R GDI+S G+GRIK E + TRK + A +++ +
Sbjct: 221 KAEAEVRPGDIISCRGQGRIKFLECSQTRKERTAWKIVLF 260
>gi|347531807|ref|YP_004838570.1| RNA-binding S4 domain-containing protein [Roseburia hominis A2-183]
gi|345501955|gb|AEN96638.1| RNA-binding S4 domain-containing protein [Roseburia hominis A2-183]
Length = 250
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 119/242 (49%), Gaps = 14/242 (5%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
++R+A + VL SDFL L + EKL + GG P AER ++ P+AL
Sbjct: 14 LSRQADRKGIVLFSDFLNLNELNIYHQS-EKLFATRTECFGGIPCAER-QMIAFLPDALY 71
Query: 61 SDPDI-VAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
D + ++AL IT + + H D LGS++ G+ R K+GDI++ GE+ A L
Sbjct: 72 YDWEYPISALKITPAYPKFAEKLGHRDILGSLMQLGVDRCKLGDILV-GEQEAYLLCEET 130
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT---IEASLRVDALASAGFKLS 174
+ADY LEK+ + V L L+ T+ F+T I S R+DA+ + + LS
Sbjct: 131 VADYFAEHLEKIRHTLVKVEPCSLSDLKV----TQEFQTQDGIVTSDRIDAVVACVYHLS 186
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGKFAVELI 233
RS+ L+ V V+ + T DI+SV G GR I GE +T KG+ +
Sbjct: 187 RSQASLLLRQEKVFVSGKLIQNPSYTCHADDIISVRGYGRFIYRGEYGTTGKGRLKIHYD 246
Query: 234 QY 235
Y
Sbjct: 247 LY 248
>gi|312869508|ref|ZP_07729663.1| S4 domain protein [Lactobacillus oris PB013-T2-3]
gi|417885433|ref|ZP_12529587.1| S4 domain protein [Lactobacillus oris F0423]
gi|311094955|gb|EFQ53244.1| S4 domain protein [Lactobacillus oris PB013-T2-3]
gi|341595355|gb|EGS38004.1| S4 domain protein [Lactobacillus oris F0423]
Length = 260
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 8/228 (3%)
Query: 9 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP---EALTSDPDI 65
R VL S FL P + +VK + GG+ AE R+ + +P + T+D ++
Sbjct: 32 RPVLTS-FLNPRQRYIARTMANAADEVKMASAGGWAGAEMQRV-LFYPTYYQPTTADFEL 89
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
L I F H +G+++G G+ R GDI L G+ Q +V +A YL +
Sbjct: 90 -RVLEINYPTKFTEFHHRQIMGTLIGEGLERAAFGDI-LGGQGRWQVVVTTAMAKYLRAN 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
+ +G V + + + + + T +SLR+DA+ +AGF SR++ L+ +G
Sbjct: 148 VSHIGRVKIKWQPVEAANVLHPVEDWEPLTTTVSSLRLDAVVAAGFNYSRNRAKQLVEHG 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
VR+NW V + + D++SV GRI++ E TRKGK V L
Sbjct: 208 QVRLNWEEVDRPDEQVVVHDLISVRHGGRIRLDEAQGVTRKGKERVSL 255
>gi|374583009|ref|ZP_09656103.1| hypothetical protein DesyoDRAFT_4572 [Desulfosporosinus youngiae
DSM 17734]
gi|374419091|gb|EHQ91526.1| hypothetical protein DesyoDRAFT_4572 [Desulfosporosinus youngiae
DSM 17734]
Length = 265
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 10/224 (4%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGN 74
FL+ + S L K+ ++ +A+GG+P+AER R+ +G E L S+ ++ LS+
Sbjct: 43 FLSLAMRDWSEAVLHKV-HLEHLAEGGFPEAERVRILIGSRGEILASEDAQISILSVRPK 101
Query: 75 FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV 134
+H LGS++G G R+ GDI + G G E+A +L+ + G +
Sbjct: 102 DSRAQLAHPQILGSLMGLGFRRDVFGDIQV-GRSGFYVATTSEIAPFLLNHWTQAGREKI 160
Query: 135 SCTRIPLLAL---EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
LLA + P + + + S R+DA+ + FK+SRS LI G VR
Sbjct: 161 EV----LLANGEPDLLPDKGEERRITVNSSRLDAVIANAFKVSRSTAQELIIQGKVRRGG 216
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
V+K T + D++S G GRIK+ E TRK + A ++I +
Sbjct: 217 IVVSKADTEAQPDDMISCRGYGRIKLLESTQTRKERIAWQIILF 260
>gi|405756200|ref|YP_006679664.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC2540]
gi|404225400|emb|CBY76762.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2540]
Length = 258
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV DI+S G GR+K+ T+K K +E+
Sbjct: 213 KTVENPDFECEEEDILSARGYGRVKVLSTGGRTKKDKIRIEI 254
>gi|25010599|ref|NP_734994.1| hypothetical protein gbs0530 [Streptococcus agalactiae NEM316]
gi|77408402|ref|ZP_00785142.1| ylmH protein [Streptococcus agalactiae COH1]
gi|77414693|ref|ZP_00790826.1| ylmH protein [Streptococcus agalactiae 515]
gi|421147589|ref|ZP_15607274.1| hypothetical protein GB112_06934 [Streptococcus agalactiae GB00112]
gi|23094952|emb|CAD46174.1| Unknown [Streptococcus agalactiae NEM316]
gi|77159253|gb|EAO70431.1| ylmH protein [Streptococcus agalactiae 515]
gi|77173005|gb|EAO76134.1| ylmH protein [Streptococcus agalactiae COH1]
gi|401685709|gb|EJS81704.1| hypothetical protein GB112_06934 [Streptococcus agalactiae GB00112]
Length = 262
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 7/236 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A+ + + ++FL P K LE+ G Y Q E ++ + PE
Sbjct: 24 LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA-PEYYQ 81
Query: 61 SDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPE 117
D D ++ + I N F +H +G++L G+ R +GDI+++ E AQ LV +
Sbjct: 82 LDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQ 140
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+ ++L+ S+ K+G SV +PL L + I +SLR+D + + K+SR++
Sbjct: 141 MTNHLVHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQ 200
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 232
LI V+VN+ V + L GD++SV G GR + + T+ K+ +E+
Sbjct: 201 STKLIEADKVKVNYAIVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKLEV 256
>gi|77411416|ref|ZP_00787762.1| ylmH protein [Streptococcus agalactiae CJB111]
gi|77162502|gb|EAO73467.1| ylmH protein [Streptococcus agalactiae CJB111]
Length = 262
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 7/236 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A+ + + ++FL P K LE+ G Y Q E ++ + PE
Sbjct: 24 LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA-PEYYQ 81
Query: 61 SDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPE 117
D D ++ + I N F +H +G++L G+ R +GDI+++ E AQ LV +
Sbjct: 82 LDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGYAQVLVDSQ 140
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+ ++LI S+ K+G SV +PL L + I +SLR+D + + K+SR +
Sbjct: 141 MTNHLIHSVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRKQ 200
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 232
LI V+VN+ V + L GD++SV G GR + + T+ K+ +E+
Sbjct: 201 STKLIEADKVKVNYAIVNRVSEQLVEGDLISVRGYGRFTLSHNLGLTKNQKYKLEV 256
>gi|160880492|ref|YP_001559460.1| RNA-binding S4 domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160429158|gb|ABX42721.1| RNA-binding S4 domain protein [Clostridium phytofermentans ISDg]
Length = 263
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 23/251 (9%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
A+ A + +++DFL + ++L + GGY AER R+ H + +
Sbjct: 18 AKSAYHKEICVYTDFLNINEISIFHSMEKELPLLAYSMYGGYEGAERVRICF-HGDMVKE 76
Query: 62 DPDIVAALSITGNFGFQ-----PCS--------HGDFLGSILGTGIAREKIGDIILQGEK 108
+I+ ++ Q P S H D+LG+IL GI R K+GDI+++G K
Sbjct: 77 HGNIMLQTEDKNDYPIQCLRIYPASEKFAGELDHRDYLGAILNVGIERSKLGDILVRG-K 135
Query: 109 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDA 165
A L+D++ TSL KV + + R+ ++ + E T SF+ + AS R+D+
Sbjct: 136 EAYCYCDSLLSDFITTSLSKVRH---NVVRVEMIKPD-EVQATISFREVTGSVASFRLDS 191
Query: 166 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TR 224
L + F SRS + LI+ V VN VT N L+ DIVSV G G+ K E ++
Sbjct: 192 LIALAFHTSRSSITGLIAGEKVFVNARLVTSNSYMLKPDDIVSVRGYGKFKFKEQGGISK 251
Query: 225 KGKFAVELIQY 235
KG+ L Y
Sbjct: 252 KGRIYATLSIY 262
>gi|407718567|ref|YP_006795972.1| S4 domain-containing protein [Leuconostoc carnosum JB16]
gi|407242323|gb|AFT81973.1| S4 domain-containing protein [Leuconostoc carnosum JB16]
Length = 264
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 5/205 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAALSIT 72
FL P + ++ D+ GG AE R + P+ SD ++ A L +
Sbjct: 41 FLNPREQYILQTLVNRVKDLTVTYNGGTIGAENQRAIIA-PDFYQFNLSDFEL-ALLEVK 98
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F H LGS++ GI R+ IGDI+ + Q +V ++ YL ++EKVG+V
Sbjct: 99 YPVKFVELHHSTLLGSLMNAGITRDVIGDILFDDSQQWQIIVDAKMVPYLQQTIEKVGHV 158
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
++ + + + + + +SLRVD + +A F +SRS +L+ VR+NWT
Sbjct: 159 KITLSVADFSHVIQKHDDWEEIFLLSSSLRVDTVIAAAFAISRSLAKSLVEQRRVRINWT 218
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKI 217
+ K + GDIVSV GR+++
Sbjct: 219 VIDKPDFMISVGDIVSVRKYGRLQL 243
>gi|373857241|ref|ZP_09599983.1| RNA-binding S4 domain protein [Bacillus sp. 1NLA3E]
gi|372452891|gb|EHP26360.1| RNA-binding S4 domain protein [Bacillus sp. 1NLA3E]
Length = 257
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 95/219 (43%), Gaps = 3/219 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
+DFL P + L + +VK GG AER R S+ D + +
Sbjct: 34 TDFLDPREQQIVKTILGEHGEVKVAFFGGTQNAERKRALFSPDYYQVSEEDFRITLFEVH 93
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F H LGS++ G+ R K GDI L E QF E+ YL T L+ VG
Sbjct: 94 YPSKFVTIEHRHVLGSLMSLGLKRGKYGDI-LYDESTVQFFAAEEIGSYLSTQLQMVGKA 152
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
++ IP + +SLR+D L S+ + +SR K LI V+VNWT
Sbjct: 153 TIRLEEIPFKKAVSVQEIWQEVSITASSLRLDTLISSIYPISRQKSQTLIGQKLVKVNWT 212
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
V GD +SV G GR+KI I T+K K+ +
Sbjct: 213 VVESASFECCEGDTLSVRGFGRVKILSIEGRTKKDKWRI 251
>gi|218282318|ref|ZP_03488608.1| hypothetical protein EUBIFOR_01190 [Eubacterium biforme DSM 3989]
gi|218216691|gb|EEC90229.1| hypothetical protein EUBIFOR_01190 [Eubacterium biforme DSM 3989]
Length = 242
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 11/206 (5%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 93
++ V GGY AER +++ PE D V L T N F+ +H D LG ++ +G
Sbjct: 45 NICVVFDGGYENAER-KIACFIPEGYEGFSDCVC-LHATYNSKFKTLTHSDLLGCLMHSG 102
Query: 94 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT-- 151
I R IGD+I+Q E +++ Y+I + ++G CT + L+YE ++
Sbjct: 103 IERSVIGDLIVQ-EDDLYIFCKEKISKYIIDNCAQIG----KCTVHFEVCLDYEITKSNK 157
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K + + +SLR+D++ + SRS+ + I G V+VN + +N L D VS+
Sbjct: 158 KEIRIMCSSLRLDSVVAQLSHCSRSEALKKIHAGFVKVNDVVLEQN-LQLCNNDFVSIRK 216
Query: 212 KGRIKIGE-INSTRKGKFAVELIQYL 236
GR + E +++T+KG+ + QY+
Sbjct: 217 TGRFQFKEVVSTTKKGRLVLNFDQYI 242
>gi|171778695|ref|ZP_02919791.1| hypothetical protein STRINF_00643 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704852|ref|YP_005203311.1| hypothetical protein Sinf_0487 [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282652|gb|EDT48076.1| S4 domain protein [Streptococcus infantarius subsp. infantarius
ATCC BAA-102]
gi|374681551|gb|AEZ61840.1| hypothetical protein, contains S4-like domain protein
[Streptococcus infantarius subsp. infantarius CJ18]
Length = 261
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 9/198 (4%)
Query: 38 VAQGGYPQAERCRLSVG--HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GI 94
++ YP AE R+ V + E D ++ A L + N F +H +G++L G+
Sbjct: 60 ISSDYYP-AEYARILVAPDYYELNLEDFEL-ALLEVNYNSKFNQLTHAQIMGTLLHKLGV 117
Query: 95 AREKIGDIILQGEKG-AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 153
R IGDI++ E+G AQ LV + DY ++ K+ SVS I L L +
Sbjct: 118 KRTIIGDILV--EQGYAQLLVTKSMVDYFRVNVTKIAKASVSLKEISLDQLIKGEKESHQ 175
Query: 154 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 213
+ +S+R+D + + KLSRS+ + LIS V+VN+ T+ + L+ GD++SV G G
Sbjct: 176 LDIMVSSMRLDKVLATVLKLSRSQAIQLISAEKVKVNYQTLDRPSEMLQFGDLISVRGFG 235
Query: 214 RIKI-GEINSTRKGKFAV 230
R I E T+ GK+ +
Sbjct: 236 RFSILSENGLTKNGKYKL 253
>gi|291550387|emb|CBL26649.1| Uncharacterized conserved protein, contains S4-like domain
[Ruminococcus torques L2-14]
Length = 266
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 118/254 (46%), Gaps = 25/254 (9%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRLSVGHP 56
++R A R V +SDFL L L K ++ GGY AER +++ P
Sbjct: 20 LSRIAFEREIVTYSDFLNL----NDQNILHTLPKNKLYSRYVLFGGYDMAER-QMAAFIP 74
Query: 57 EALT-----SD--------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 103
EAL+ SD P + + +H DFLGSIL GI R K GDI+
Sbjct: 75 EALSLRYGVSDITPKEIDYPFCAVKIEPKNKRFSEDLTHRDFLGSILNLGIDRSKTGDIL 134
Query: 104 LQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRV 163
+ E A + +L + L +V + + + I L + Y P + K +S+R+
Sbjct: 135 VT-EDSALLFINKDLVSVVTEDLTRVRHTVIDSSVINLDMINYTPD-LQQIKGTVSSVRL 192
Query: 164 DALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS- 222
D+L F SRSKL LI V VN +T NG ++ GD++SV G G+ + E
Sbjct: 193 DSLLPLAFSSSRSKLSGLIEGAKVFVNGKLITSNGYQVKEGDLISVRGLGKFRFEEAGKI 252
Query: 223 TRKGKFAVELIQYL 236
T+K + +V + +Y+
Sbjct: 253 TKKNRISVTIQKYV 266
>gi|116618583|ref|YP_818954.1| cell division protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116097430|gb|ABJ62581.1| Cell division protein, S4-like domain [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 265
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 5/216 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGN 74
FL P + + AD+ GG AE R + E D + ++ L I
Sbjct: 41 FLNPREQYILNVLVNHAADLAVYFNGGVQGAESQRAILIPKEYPQDDLEFEISLLEIKYP 100
Query: 75 FGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQFLVVPELADYLITSLEKVGNVS 133
F H LGS++ +GI+R IGDI+ Q Q ++ ++ Y+ + K+G+V
Sbjct: 101 TKFDDLHHSTILGSMMYSGISRNVIGDILYDQTHSRWQIIIDSKMQHYMQQMVTKIGHVQ 160
Query: 134 VSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
VS L L + ++F + +SLR+D + SAGF LSRS LI VRVNW+
Sbjct: 161 VSLIECDLNNVLPHINDWEENFLLL-SSLRLDTVISAGFDLSRSGAKKLIEENQVRVNWS 219
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 227
+ K L GD++SV GR++I ++ ++KGK
Sbjct: 220 EIAKPDVELAIGDVISVRKHGRVQIKLLDGISKKGK 255
>gi|339496651|ref|ZP_08657627.1| cell division protein [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 277
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 5/216 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGN 74
FL P + + AD+ GG AE R + E D + ++ L I
Sbjct: 41 FLNPREQYILNVLVNHAADLAVYFNGGVQGAESQRAILIPKEYPQDDLEFEISLLEIKYP 100
Query: 75 FGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQFLVVPELADYLITSLEKVGNVS 133
F H LGS++ +GI+R IGDI+ Q Q ++ ++ Y+ + K+G+V
Sbjct: 101 TKFDDLHHSTILGSMMYSGISRNVIGDILYDQTHSRWQIIIDSKMQHYMQQMVTKIGHVQ 160
Query: 134 VSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
VS L L + ++F + +SLR+D + SAGF LSRS LI VRVNW+
Sbjct: 161 VSLIECDLNNVLPHINDWEENFLLL-SSLRLDTVISAGFDLSRSGAKKLIEENQVRVNWS 219
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 227
+ K L GD++SV GR++I ++ ++KGK
Sbjct: 220 EIAKPDVELAIGDVISVRKHGRVQIKLLDGISKKGK 255
>gi|375088332|ref|ZP_09734672.1| hypothetical protein HMPREF9703_00754 [Dolosigranulum pigrum ATCC
51524]
gi|374562370|gb|EHR33700.1| hypothetical protein HMPREF9703_00754 [Dolosigranulum pigrum ATCC
51524]
Length = 260
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 5/195 (2%)
Query: 41 GGYPQAERCRLSV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
GG ER R + + E + DI A I+ F SH D LG+ILGTGI R+K
Sbjct: 62 GGTTGTERQRALIKPSYIEDVKGHYDI-ALCEISYPEKFSQLSHRDILGAILGTGIDRKK 120
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 158
+GDII Q + Q V L +L + VG +VS PL + +
Sbjct: 121 LGDII-QDDGRWQLFVDASLVSFLTLHVTTVGRTTVSLIEKPLKEAVPINEHWQKKNIVI 179
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218
+S R+D + G ++SR + LI++ V++NWT+ + DI+SV G GR+ +
Sbjct: 180 SSRRLDVFIAGGLRISRDQAKQLIASSKVKLNWTSTENVSEDVNEKDIISVRGFGRLTLL 239
Query: 219 EIN-STRKGKFAVEL 232
I+ TRK K AVE+
Sbjct: 240 SIDYRTRKDKLAVEI 254
>gi|422810104|ref|ZP_16858515.1| S4 domain-containing protein [Listeria monocytogenes FSL J1-208]
gi|378751768|gb|EHY62356.1| S4 domain-containing protein [Listeria monocytogenes FSL J1-208]
Length = 258
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESAMKDYLTLQLEKIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+K+ T+K K +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254
>gi|424714906|ref|YP_007015621.1| Putative RNA-binding protein ylmH [Listeria monocytogenes serotype
4b str. LL195]
gi|424014090|emb|CCO64630.1| Putative RNA-binding protein ylmH [Listeria monocytogenes serotype
4b str. LL195]
Length = 260
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG AER R ++ +P+ T ++ D +A I
Sbjct: 37 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRR-ALIYPDYYTPTEADFEIALFHI 95
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 96 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 154
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 155 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 214
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+K+ T+K K +E+
Sbjct: 215 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 256
>gi|377809539|ref|YP_005004760.1| hypothetical protein PECL_811 [Pediococcus claussenii ATCC BAA-344]
gi|361056280|gb|AEV95084.1| hypothetical protein PECL_811 [Pediococcus claussenii ATCC BAA-344]
Length = 262
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 5/217 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSI 71
++FL P + ++ D++ GG+ +E R V + + + +D ++ + L I
Sbjct: 36 TNFLNPREQYILQTLVNRVDDIRVEFDGGFSNSELKRGLVFPDYFQPIEADFNL-SILMI 94
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H LG+ GI R GDII +GE Q +V EL+++ + + ++G
Sbjct: 95 DYPTKFAELEHRQILGTFANLGIERNTFGDIISEGETW-QIIVNRELSNFFLNEVTRIGK 153
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
+ V + + + + T SLR+D + S F +SR + LI + VRVNW
Sbjct: 154 IKVQLKELEMTNIIQPSEDWEETDTTVKSLRLDLVISNVFNVSRQRAKALIEHKRVRVNW 213
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
+ V K L+ D++SV GRI++ E+N T+KGK
Sbjct: 214 SIVEKPDFELQLNDMISVRQFGRIRVEELNGETKKGK 250
>gi|268611660|ref|ZP_06145387.1| RNA-binding S4 [Ruminococcus flavefaciens FD-1]
Length = 252
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 4/198 (2%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQ-PCSHGDFLGSILGTGIAREKI 99
GG+P A R L+V H + + +T + + +H DFLG+ +G + RE I
Sbjct: 57 GGFPDARRKMLAVYHDYCDEYVEEEYPFVCLTFTYRKEDKLTHRDFLGTFMGMQLKREVI 116
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDI++ E AQ V A +++S+ K+G V V + LE K T+ A
Sbjct: 117 GDIVV-AEGEAQAFVTEVAAKLILSSVSKIGRVGVKVSDDRPFELEVRQEYKKIIGTV-A 174
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+D + S +SR LI + V VN T + L GDI+SV G GR +
Sbjct: 175 SLRLDCIVSLAAHISRDSAAGLIRSDRVDVNHFTASSISQELHEGDIISVRGSGRYVLSA 234
Query: 220 INS-TRKGKFAVELIQYL 236
+N + KG+ VE+++Y+
Sbjct: 235 VNGLSGKGRIHVEVLKYI 252
>gi|46908264|ref|YP_014653.1| S4 domain-containing protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|47094010|ref|ZP_00231742.1| S4 domain protein [Listeria monocytogenes str. 4b H7858]
gi|254826216|ref|ZP_05231217.1| S4 domain-containing protein [Listeria monocytogenes FSL J1-194]
gi|254933456|ref|ZP_05266815.1| S4 domain-containing protein [Listeria monocytogenes HPB2262]
gi|254992791|ref|ZP_05274981.1| S4 domain protein [Listeria monocytogenes FSL J2-064]
gi|255522100|ref|ZP_05389337.1| S4 domain protein [Listeria monocytogenes FSL J1-175]
gi|386054282|ref|YP_005971840.1| S4 domain-containing protein [Listeria monocytogenes Finland 1998]
gi|405750383|ref|YP_006673849.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
ATCC 19117]
gi|405753256|ref|YP_006676721.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC2378]
gi|417315684|ref|ZP_12102358.1| S4 domain protein [Listeria monocytogenes J1816]
gi|417318120|ref|ZP_12104714.1| S4 domain protein [Listeria monocytogenes J1-220]
gi|424823798|ref|ZP_18248811.1| S4 domain protein [Listeria monocytogenes str. Scott A]
gi|46881535|gb|AAT04830.1| S4 domain protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47017615|gb|EAL08416.1| S4 domain protein [Listeria monocytogenes str. 4b H7858]
gi|293585017|gb|EFF97049.1| S4 domain-containing protein [Listeria monocytogenes HPB2262]
gi|293595457|gb|EFG03218.1| S4 domain-containing protein [Listeria monocytogenes FSL J1-194]
gi|328466091|gb|EGF37261.1| S4 domain protein [Listeria monocytogenes J1816]
gi|328472677|gb|EGF43535.1| S4 domain protein [Listeria monocytogenes J1-220]
gi|332312478|gb|EGJ25573.1| S4 domain protein [Listeria monocytogenes str. Scott A]
gi|346646933|gb|AEO39558.1| S4 domain-containing protein [Listeria monocytogenes Finland 1998]
gi|404219583|emb|CBY70947.1| RNA-binding S4 domain protein [Listeria monocytogenes ATCC 19117]
gi|404222456|emb|CBY73819.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2378]
Length = 258
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+K+ T+K K +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254
>gi|16804067|ref|NP_465552.1| hypothetical protein lmo2028 [Listeria monocytogenes EGD-e]
gi|254827084|ref|ZP_05231771.1| S4 domain-containing protein [Listeria monocytogenes FSL N3-165]
gi|255016669|ref|ZP_05288795.1| hypothetical protein LmonF_00281 [Listeria monocytogenes FSL
F2-515]
gi|255026556|ref|ZP_05298542.1| hypothetical protein LmonocytFSL_09855 [Listeria monocytogenes FSL
J2-003]
gi|386044335|ref|YP_005963140.1| hypothetical protein [Listeria monocytogenes 10403S]
gi|386051003|ref|YP_005968994.1| S4 domain-containing protein [Listeria monocytogenes FSL R2-561]
gi|16411498|emb|CAD00106.1| lmo2028 [Listeria monocytogenes EGD-e]
gi|258599467|gb|EEW12792.1| S4 domain-containing protein [Listeria monocytogenes FSL N3-165]
gi|345537569|gb|AEO07009.1| hypothetical protein LMRG_01177 [Listeria monocytogenes 10403S]
gi|346424849|gb|AEO26374.1| S4 domain-containing protein [Listeria monocytogenes FSL R2-561]
Length = 258
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 153 VNVMLEETELTNAVYAPVIWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+K+ T+K K +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254
>gi|284802475|ref|YP_003414340.1| hypothetical protein LM5578_2231 [Listeria monocytogenes 08-5578]
gi|284995617|ref|YP_003417385.1| hypothetical protein LM5923_2182 [Listeria monocytogenes 08-5923]
gi|404284525|ref|YP_006685422.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC2372]
gi|404411329|ref|YP_006696917.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC5850]
gi|404414106|ref|YP_006699693.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC7179]
gi|405759079|ref|YP_006688355.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC2479]
gi|284058037|gb|ADB68978.1| hypothetical protein LM5578_2231 [Listeria monocytogenes 08-5578]
gi|284061084|gb|ADB72023.1| hypothetical protein LM5923_2182 [Listeria monocytogenes 08-5923]
gi|404231155|emb|CBY52559.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC5850]
gi|404234027|emb|CBY55430.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2372]
gi|404236961|emb|CBY58363.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2479]
gi|404239805|emb|CBY61206.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC7179]
Length = 259
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG AER R ++ +P+ T ++ D +A I
Sbjct: 36 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRR-ALIYPDYYTPTEADFEIALFHI 94
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 95 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 153
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 154 VNVMLEETELTNAVYAPVIWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 213
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+K+ T+K K +E+
Sbjct: 214 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 255
>gi|217963827|ref|YP_002349505.1| S4 domain-containing protein [Listeria monocytogenes HCC23]
gi|386008792|ref|YP_005927070.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
L99]
gi|386027401|ref|YP_005948177.1| hypothetical protein LMM7_2114 [Listeria monocytogenes M7]
gi|217333097|gb|ACK38891.1| S4 domain protein [Listeria monocytogenes HCC23]
gi|307571602|emb|CAR84781.1| RNA-binding S4 domain protein [Listeria monocytogenes L99]
gi|336023982|gb|AEH93119.1| hypothetical protein LMM7_2114 [Listeria monocytogenes M7]
Length = 259
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG AER R ++ +P+ T ++ D +A I
Sbjct: 36 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRR-ALIYPDYYTPTEADFEIALFHI 94
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 95 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 153
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 154 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 213
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+K+ T+K K +E+
Sbjct: 214 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 255
>gi|47097617|ref|ZP_00235141.1| S4 domain protein [Listeria monocytogenes str. 1/2a F6854]
gi|254912587|ref|ZP_05262599.1| S4 domain-containing protein [Listeria monocytogenes J2818]
gi|254936913|ref|ZP_05268610.1| S4 domain-containing protein [Listeria monocytogenes F6900]
gi|386047680|ref|YP_005966012.1| S4 domain-containing protein [Listeria monocytogenes J0161]
gi|47014004|gb|EAL05013.1| S4 domain protein [Listeria monocytogenes str. 1/2a F6854]
gi|258609513|gb|EEW22121.1| S4 domain-containing protein [Listeria monocytogenes F6900]
gi|293590578|gb|EFF98912.1| S4 domain-containing protein [Listeria monocytogenes J2818]
gi|345534671|gb|AEO04112.1| S4 domain-containing protein [Listeria monocytogenes J0161]
Length = 258
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEIGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+K+ T+K K +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254
>gi|419706460|ref|ZP_14233981.1| Hypothetical protein PS4_51353 [Streptococcus salivarius PS4]
gi|383283781|gb|EIC81724.1| Hypothetical protein PS4_51353 [Streptococcus salivarius PS4]
Length = 267
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 108/212 (50%), Gaps = 11/212 (5%)
Query: 14 SDFLTPPVLKESMMALEKLAD---VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAAL 69
+DFL P + +E LA+ +K + E R+ + SD D + L
Sbjct: 38 TDFLNP----REIQIVEDLANYYHLKFFVSSNHETEEYRRVIIAPDYYELSDDDFEIKRL 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
++ F +H LG+++ G+ R+ GDII+ + QF + LA+Y I +++K
Sbjct: 94 EVSYARQFNTLTHPKILGTLINQLGLERQVFGDIIINDDGRIQFSIASHLANYAIMTIKK 153
Query: 129 VGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+GNVSV+ I + + + SF + +S+R+D + + +SRS+ + LIS+G V
Sbjct: 154 IGNVSVTLKEISEEDWITNQENYSHSF-VLLSSMRLDNVLATVLNISRSRALKLISSGKV 212
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
++N+ V K + GD++SV G GR ++ E
Sbjct: 213 KLNYRQVEKADQLITIGDMISVRGFGRFRLAE 244
>gi|168206094|ref|ZP_02632099.1| S4 domain protein [Clostridium perfringens E str. JGS1987]
gi|169343604|ref|ZP_02864603.1| S4 domain protein [Clostridium perfringens C str. JGS1495]
gi|169298164|gb|EDS80254.1| S4 domain protein [Clostridium perfringens C str. JGS1495]
gi|170662411|gb|EDT15094.1| S4 domain protein [Clostridium perfringens E str. JGS1987]
Length = 253
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 8/226 (3%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
V +F TP V S + L DV + G + ER R+ + E P ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGER-RVIAFNKEEYDLFP--ISLLR 88
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I N F H D+LGSI+ GI R KIGD+IL+ + G V + D+LI +L K+
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
N++ C I L E P + I S R+D + +A +SRSK ++ I++G V ++
Sbjct: 148 NLNCKCEVIYDLD-EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
+ + +++ G G+ KI I +T+ G+ + + +Y
Sbjct: 207 YRITKDKSKEVSEDSRLTIRGIGKFKISNILGTTKSGRLKLTVFKY 252
>gi|256846979|ref|ZP_05552425.1| RNA-binding S4 domain-containing protein [Lactobacillus
coleohominis 101-4-CHN]
gi|256715643|gb|EEU30618.1| RNA-binding S4 domain-containing protein [Lactobacillus
coleohominis 101-4-CHN]
Length = 261
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 113/239 (47%), Gaps = 8/239 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A A R VL ++FL P + + + + AD++ + GGYP AE R + +P+
Sbjct: 25 IATAAGEYRPVL-TNFLNPRQIFIAETLVNREADLRFQSWGGYPDAEMQRFLI-YPDYYQ 82
Query: 61 SDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
+ + N+ F H LG++LG+G+ R GDI L + Q V E+
Sbjct: 83 PNREDFQINYYQINYPTKFVELHHRQILGTLLGSGLTRGSFGDI-LNNDLVWQIAVSREV 141
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
+ ++ LE++G ++V RI L + SLR+DA+ + F SR++
Sbjct: 142 SQFVDQELERIGRINVQFERISQDKLVLPDDDWEKVSITVPSLRLDAVIANAFNYSRNRA 201
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI---GEINSTRKGKFAVELIQ 234
I +G VRVNW + + + D++SV GRIK+ G N + ++LI+
Sbjct: 202 KAAIEHGLVRVNWEEIDRPDYQMAIHDLISVRHGGRIKLLQSGGKNRKNNLRLDIQLIK 260
>gi|372325203|ref|ZP_09519792.1| hypothetical protein OKIT_1327 [Oenococcus kitaharae DSM 17330]
gi|366984011|gb|EHN59410.1| hypothetical protein OKIT_1327 [Oenococcus kitaharae DSM 17330]
Length = 257
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 6/218 (2%)
Query: 9 REVLHSDFLTPPVLKESMMALEKLADVKA---VAQGGYPQAERCRLSVGHPEALTSDPDI 65
R FLT + + L LA A V GGYPQAE R +G E +D I
Sbjct: 27 RAAFKDSFLTVFLNPREQLLLAGLAKQDALPIVFSGGYPQAENKRALIG-AEDGKADFQI 85
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
A L + + H LGS+L GIA ++IGD+I + ++ Q L+ +LA++++ +
Sbjct: 86 -AVLQLDYAVKYIHLHHSTILGSLLHQGIAYDRIGDVIHEADRW-QILIDAQLAEFVVEN 143
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
+++ G+ ++ + + K + I AS R+D L S + SR+ +LI +G
Sbjct: 144 VKRAGSKKIAFHEVAASEMLAPESDEKEKEVIVASQRIDLLISQIYNFSRAHAKDLIESG 203
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST 223
V VNW + GD++S GRI++ E T
Sbjct: 204 QVMVNWFENDNPSYLAKLGDVISTHSFGRIRLIETRGT 241
>gi|110800170|ref|YP_696535.1| S4 domain-containing protein [Clostridium perfringens ATCC 13124]
gi|182625685|ref|ZP_02953454.1| S4 domain protein [Clostridium perfringens D str. JGS1721]
gi|422346521|ref|ZP_16427435.1| hypothetical protein HMPREF9476_01508 [Clostridium perfringens
WAL-14572]
gi|422874771|ref|ZP_16921256.1| S4 domain-containing protein [Clostridium perfringens F262]
gi|110674817|gb|ABG83804.1| S4 domain protein [Clostridium perfringens ATCC 13124]
gi|177909087|gb|EDT71562.1| S4 domain protein [Clostridium perfringens D str. JGS1721]
gi|373226066|gb|EHP48393.1| hypothetical protein HMPREF9476_01508 [Clostridium perfringens
WAL-14572]
gi|380304412|gb|EIA16701.1| S4 domain-containing protein [Clostridium perfringens F262]
Length = 253
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 8/226 (3%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
V +F TP V S + L DV + G + ER R+ + E P ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGER-RVIAFNKEEYDLFP--ISLLR 88
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I N F H D+LGSI+ GI R KIGD+IL+ + G V + D+LI +L K+
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
N++ C I L E P + I S R+D + +A +SRSK ++ I++G V ++
Sbjct: 148 NLNCKCEIIYDLD-EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
+ + +++ G G+ KI I +T+ G+ + + +Y
Sbjct: 207 YRITKDKSKEVSEDSRLTIRGIGKFKISNIFGTTKSGRLKLTVFKY 252
>gi|110802596|ref|YP_699135.1| S4 domain-containing protein [Clostridium perfringens SM101]
gi|110683097|gb|ABG86467.1| S4 domain protein [Clostridium perfringens SM101]
Length = 253
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 8/226 (3%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
V +F TP V S + L DV + G + ER R+ + E P ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGER-RVIAFNKEEYDLFP--ISLLR 88
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I N F H D+LGSI+ GI R KIGD+IL+ + G V + D+LI +L K+
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
N++ C I L E P + I S R+D + +A +SRSK ++ I++G V ++
Sbjct: 148 NLNCKCEIIYDLD-ETPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
+ + +++ G G+ KI I +T+ G+ + + +Y
Sbjct: 207 YRITKDKSKEVSEDSRLTIRGIGKFKISNIFGTTKSGRLKLTVFKY 252
>gi|374997216|ref|YP_004972715.1| hypothetical protein Desor_4799 [Desulfosporosinus orientis DSM
765]
gi|357215582|gb|AET70200.1| hypothetical protein, contains S4-like domain [Desulfosporosinus
orientis DSM 765]
Length = 265
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 14/234 (5%)
Query: 11 VLHSDF--LTPPV---LKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPD 64
VLH LTP + ++E + ++ + V+ A+GG+P+AER R+ +G E L +
Sbjct: 32 VLHKGIKQLTPFLSLAMREWLESIIRKEQVEYRAEGGFPEAERVRIFMGPRGEWLDTADT 91
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
+A + + H LGS++G GI R+ GDI G+KG E+ D+++
Sbjct: 92 GMALIWVMPTDSRIQLQHRQILGSLMGLGIRRDVFGDI-QPGQKGFYIAAASEIVDFVLN 150
Query: 125 SLEKVG--NVSVSCTR-IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
+ G + VS R P L P + + +S R+DA+ + F +SR+ L
Sbjct: 151 NWTNAGRDTIQVSLVRGKPSLL----PDLGEERRITVSSSRIDAVIANAFGVSRTVAQEL 206
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
IS G VR V+K T L+ DI+S G GRIK+ + TRK + A +++ +
Sbjct: 207 ISQGKVRRGGLVVSKFTTELQADDIISCRGHGRIKLLKSAQTRKERIAWQILLF 260
>gi|168210785|ref|ZP_02636410.1| S4 domain protein [Clostridium perfringens B str. ATCC 3626]
gi|170711149|gb|EDT23331.1| S4 domain protein [Clostridium perfringens B str. ATCC 3626]
Length = 253
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 8/226 (3%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
V +F TP V S + L DV + G + ER ++ E D ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGERRVIAFNKDEY---DLFPISLLR 88
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I N F H D+LGSI+ GI R KIGD+IL+ + G V + D+LI +L K+
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
N++ C I L E P + I S R+D + +A +SRSK ++ I++G V ++
Sbjct: 148 NLNCKCEIIYDLD-EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
+ + +++ G G+ KI I +T+ G+ + + +Y
Sbjct: 207 YRITKDKSKEVSEDSRLTIRGVGKFKISNIFGTTKSGRLKLTVFKY 252
>gi|339301993|ref|ZP_08651066.1| S4 domain-containing protein YlmH [Streptococcus agalactiae ATCC
13813]
gi|319744574|gb|EFV96927.1| S4 domain-containing protein YlmH [Streptococcus agalactiae ATCC
13813]
Length = 262
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 113/236 (47%), Gaps = 7/236 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A+ + + ++FL P K LE+ G Y Q E ++ + PE
Sbjct: 24 LAQYVENTYSFITTEFLNPREFKILESVLERRGS-HYYTSGQYFQTEYVKVIIA-PEYYQ 81
Query: 61 SDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPE 117
D D ++ + I N F +H +G++L G+ R +GDI+++ E AQ LV +
Sbjct: 82 LDMVDFNLSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQ 140
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+ ++L+ S+ K+G SV +PL + I +SLR+D + + K+SR++
Sbjct: 141 MTNHLVHSVTKIGTASVQLAEVPLSKFLTPKQDIQKLTVIASSLRLDKILATILKISRTQ 200
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 232
LI V+VN+ V + L GD++SV G GR + + T+ K+ +E+
Sbjct: 201 STKLIEADKVKVNYAIVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKLEV 256
>gi|259503039|ref|ZP_05745941.1| S4 domain-containing protein YlmH [Lactobacillus antri DSM 16041]
gi|259168905|gb|EEW53400.1| S4 domain-containing protein YlmH [Lactobacillus antri DSM 16041]
Length = 260
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 7/232 (3%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSD 62
ASS+ + + FL P + +VK + GG+ AE R + + +D
Sbjct: 27 ASSQYRPVLTVFLNPRQRYIARTMANAADEVKMASAGGWSGAEMQRVLFYPAYYQPTAAD 86
Query: 63 PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG-AQFLVVPELADY 121
++ L + F H +G+++G G+ R GDI+ G++G Q +V +A Y
Sbjct: 87 FEL-RVLEVNYPTKFTELHHRQIMGTLIGEGLERSAFGDIL--GDQGRWQVVVTTAMAKY 143
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
L ++ +G + + + + ++ T +SLR+DA+ +AGF SR++ L
Sbjct: 144 LQANVNHIGRAKIKWRPVETADVLHPVEDWEALTTTVSSLRLDAVVAAGFNYSRNRAKQL 203
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+ +G VR+NW V + + D++SV GRI++ E + TRKGK V L
Sbjct: 204 VEHGQVRLNWEEVDRPDEQVVVHDLISVRHGGRIRLDETHGVTRKGKERVSL 255
>gi|402311264|ref|ZP_10830212.1| hypothetical protein HMPREF1142_0617 [Eubacterium sp. AS15]
gi|400365410|gb|EJP18462.1| hypothetical protein HMPREF1142_0617 [Eubacterium sp. AS15]
Length = 262
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 109/222 (49%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSI 71
+DF+ P K + L +D + GG ++ER +L V +P ++ V L +
Sbjct: 39 TDFMNPYEQKVFISILNAFSDDISYTLFGGAEKSER-KLFVIYPVYHMNEIKCPVKLLRL 97
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
GNF F+ SH D LG+++ GI REK GDI L E ++ + DYL+T+ + + +
Sbjct: 98 YGNFKFEKISHRDCLGALMSMGIVREKTGDIYLH-EDYVDIVIDESIDDYLLTNFKSIRH 156
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
SV + + LE +SLR+D + S + L R+ N++ + V+V++
Sbjct: 157 CSVKSKILDIDELEVSKQEFDVKLCSVSSLRLDNIISEAYNLPRATSTNIVKSNRVKVDY 216
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVEL 232
+ + ++SV G GR + I + ++KGK VEL
Sbjct: 217 EPILSPSKEVADNCLISVKGYGRFRYITQKGMSKKGKIRVEL 258
>gi|18310834|ref|NP_562768.1| S4 domain-containing protein [Clostridium perfringens str. 13]
gi|168215480|ref|ZP_02641105.1| S4 domain protein [Clostridium perfringens NCTC 8239]
gi|18145516|dbj|BAB81558.1| probable cell-division protein [Clostridium perfringens str. 13]
gi|182382018|gb|EDT79497.1| S4 domain protein [Clostridium perfringens NCTC 8239]
Length = 253
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 8/226 (3%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
V +F TP V S + L DV + G + ER ++ E D ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGERRVIAFNKDEY---DLFPISLLR 88
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I N F H D+LGSI+ GI R KIGD+IL+ + G V + D+LI +L K+
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDD-GCYVAVHHSIIDFLINNLNKIR 147
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
N++ C I L E P + I S R+D + +A +SRSK ++ I++G V ++
Sbjct: 148 NLNCKCEIIYDLD-EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLD 206
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
+ + +++ G G+ KI I +T+ G+ + + +Y
Sbjct: 207 YRITKDKSKEVSEDSRLTIRGIGKFKISNIFGTTKSGRLKLTVFKY 252
>gi|381336957|ref|YP_005174732.1| cell division protein [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356644923|gb|AET30766.1| cell division protein [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 265
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 105/216 (48%), Gaps = 5/216 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGN 74
FL P + + AD+ GG AE R + E D + ++ + I
Sbjct: 41 FLNPREQYILNVLVNHAADLAVYFNGGVQGAESQRAILIPKEYPQDDLEFEISLIEIKYP 100
Query: 75 FGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQFLVVPELADYLITSLEKVGNVS 133
F H LGS++ +GI+R IGDI+ Q Q ++ ++ Y+ + K+G+V
Sbjct: 101 TKFDDLHHSTILGSMMYSGISRNVIGDILYDQTHSRWQIIIDSKMQHYMQQMVTKIGHVQ 160
Query: 134 VSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
VS L L + ++F + +SLR+D + SAGF LSRS LI VRVNW+
Sbjct: 161 VSLIECDLNNVLPHINDWEENFLLL-SSLRLDTVISAGFDLSRSGAKKLIEENQVRVNWS 219
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 227
+ K L GD++SV GR++I ++ ++KGK
Sbjct: 220 EIAKPDVELAIGDVISVRKHGRVQIKLLDGISKKGK 255
>gi|116512743|ref|YP_811650.1| cell division protein [Lactococcus lactis subsp. cremoris SK11]
gi|414074890|ref|YP_007000107.1| RNA-binding protein, containing S4 domain [Lactococcus lactis
subsp. cremoris UC509.9]
gi|116108397|gb|ABJ73537.1| Cell division protein, S4-like domain [Lactococcus lactis subsp.
cremoris SK11]
gi|413974810|gb|AFW92274.1| RNA-binding protein, containing S4 domain [Lactococcus lactis
subsp. cremoris UC509.9]
Length = 263
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 7/223 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
S F P E + L +V+ + Q E ++ + P D D +A L I
Sbjct: 36 STFFLNPREVEILKTLANKREVQVFSSAELAQTELVKIILA-PNFYVLDKDDFDIALLEI 94
Query: 72 TGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F SH LG+ LG G+ R+++GDII+ K Q V L + S++K+G
Sbjct: 95 SYAIKFVQISHAQVLGTFLGQAGVKRQELGDIIVTDSK-IQIFVSKHLVESF-KSIDKIG 152
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+V I L L + R + LR+D + + FK+SR+ N++ + V++N
Sbjct: 153 RAAVKIDEISLTDLAQDTERAIQEVVLLDGLRIDKMIAIAFKISRNIATNMLESKKVKIN 212
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVEL 232
+ + K ++ GD++SV G GRIKI + T+KGK VE+
Sbjct: 213 YQEIDKKDFSVGAGDLISVRGFGRIKILSLLGLTKKGKQRVEI 255
>gi|226224634|ref|YP_002758741.1| hypothetical protein Lm4b_02049 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|386732771|ref|YP_006206267.1| hypothetical protein MUO_10410 [Listeria monocytogenes 07PF0776]
gi|406704815|ref|YP_006755169.1| RNA-binding S4 domain protein [Listeria monocytogenes L312]
gi|225877096|emb|CAS05808.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|384391529|gb|AFH80599.1| hypothetical protein MUO_10410 [Listeria monocytogenes 07PF0776]
gi|406361845|emb|CBY68118.1| RNA-binding S4 domain protein [Listeria monocytogenes L312]
Length = 258
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG AER R + +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEIALFHI 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSEW-QLLVESTMKDYLTLQLEKIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAVYAPVVWEEMGLTVSSMRLDVIISNVHHISRQKAKQLVTAGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+K+ T+K K +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254
>gi|306820242|ref|ZP_07453884.1| conserved hypothetical protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551739|gb|EFM39688.1| conserved hypothetical protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 262
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI-VAALSI 71
+DF+ P K + L +D + A GG ++ER ++ V +P + V L +
Sbjct: 39 TDFMNPYEQKVFISILNAFSDEISYALFGGDEKSER-KIFVIYPVYQMDEIKCPVKLLRL 97
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
GNF F+ SH D LG+++ GI REK GDI L E ++ + DYL+T+ + + +
Sbjct: 98 YGNFKFEKISHRDCLGALMSMGIVREKTGDIYLH-EDYVDIVIDESIDDYLLTNFKSIRH 156
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
SV + + LE+ +SLR+D + S + L R+ N++ + V+V++
Sbjct: 157 CSVKSKILDIDELEFSKQEFDVKLCSVSSLRLDNIISEVYNLPRATSTNIVKSNRVKVDY 216
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVEL 232
+ + ++SV G GR + I + ++KGK VEL
Sbjct: 217 EPILSPSKEVADNCLISVKGYGRFRYISQKGMSKKGKIRVEL 258
>gi|328957133|ref|YP_004374519.1| cell shape determination protein [Carnobacterium sp. 17-4]
gi|328673457|gb|AEB29503.1| factor involved in shape determination, RNA-binding fold protein
[Carnobacterium sp. 17-4]
Length = 260
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 19/229 (8%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
++FL P L + K +++ + GGY AER R + P T D + I
Sbjct: 36 TNFLDPRQLHIVKTIVGKNSEITIHSFGGYEAAERVRAFIC-PSYFTPKQDDFGITICEI 94
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F SHG LG++L TG+ R+ GDII G + Q V Y+ + +G
Sbjct: 95 RYPIKFASLSHGKVLGTLLSTGLKRDYFGDIISDGTRW-QVFVENTTKSYVEQQVISIGK 153
Query: 132 VSVSCTR-------IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
V+V +P+ E +T+ +S+R+D L S+ FK+SR + +I +
Sbjct: 154 VAVRMEERDYTDILVPIDNWTIES------QTV-SSMRLDTLVSSVFKISRQRAKQMIES 206
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
G V++NW T+ + DIVSV G GR+++ EI T+K K+ ++L
Sbjct: 207 GKVKLNWVESTRPDFEIGLLDIVSVRGYGRLQVQEIEGKTKKDKWRLQL 255
>gi|295692695|ref|YP_003601305.1| cell division protein, s4-like domain [Lactobacillus crispatus ST1]
gi|295030801|emb|CBL50280.1| Cell division protein, S4-like domain [Lactobacillus crispatus ST1]
Length = 266
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 9/229 (3%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 65
+ E + +DFL P K +++ D GGYP AE+ R+ + E L P
Sbjct: 34 KHEPILTDFLDPG--KRAILRTIVGNDAFVQEYGGYPNAEKKRVYLSE-EWLNLRPSDYQ 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ I F +H LG++ +GI GDII + QF E+ ++
Sbjct: 91 IQPYEIEYPQKFTKINHSVILGTLANSGIDTSIFGDIITDNQGKWQFFTKKEMTEFFEEQ 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE--ASLRVDALASAGFKLSRSKLVNLIS 183
++++G V P+ E P S + E AS+R+DA+ S + SR ++ +I+
Sbjct: 151 IDRIGRAKVKLR--PISFKEVLVPEDDSIEKTEIVASMRIDAVLSGISRQSRGQIQKMIN 208
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+ V++NW + + ++ D++S+ GRI I ++++TRKGK+ V L
Sbjct: 209 SQLVKLNWHEIADSNIMIKEDDVLSLRHFGRILIEDVSTTRKGKYKVVL 257
>gi|365903048|ref|ZP_09440871.1| cell division protein [Lactobacillus malefermentans KCTC 3548]
Length = 260
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 97/204 (47%), Gaps = 9/204 (4%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILG 91
+VK GGYP AE R+ + +PE D V I F H LG++
Sbjct: 56 NVKMQPYGGYPGAELNRVLI-YPEYFEPKKTDFEVTLFEIIYPTKFADLHHSQVLGTLAN 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
G+ RE IGDII GE+ QF V + Y ++++G + V T P E P
Sbjct: 115 IGVDREVIGDIITDGERW-QFFVETGITSYFENQVDQIGKIKVHLT--PKENSEAVEPLN 171
Query: 152 KSFK--TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 209
+ + +S+R+D++ + F LSR + L+ G VRVNW K L DIVS+
Sbjct: 172 EWEEEGATLSSIRLDSIVATAFHLSRHRSKALVEAGKVRVNWAESNKPDYELAIADIVSI 231
Query: 210 SGKGRIKIGEIN-STRKGKFAVEL 232
G GRIK+ ++ T+K K V L
Sbjct: 232 RGFGRIKLISLDGQTKKEKTRVTL 255
>gi|389855204|ref|YP_006357448.1| cell division protein [Lactococcus lactis subsp. cremoris NZ9000]
gi|300071626|gb|ADJ61026.1| cell division protein [Lactococcus lactis subsp. cremoris NZ9000]
Length = 263
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 7/223 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
S F P E + L +V+ + Q E ++ + P D D +A L I
Sbjct: 36 STFFLNPREVEILKTLANKREVQVFSSAELAQTELVKIILA-PNFYVLDKDDFDIALLEI 94
Query: 72 TGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F SH LG+ LG G+ R+++GDII+ K Q V L + S++K+G
Sbjct: 95 SYAIKFVQISHAQVLGTFLGQAGVKRQELGDIIVTDRK-IQIFVSKHLVESF-KSIDKIG 152
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+V I L L R + LR+D + + FK+SR+ N++ + V++N
Sbjct: 153 RAAVKIDEISLTDLAQNTERAIQEVVLLDGLRIDKMIAIAFKISRNIATNMLESKKVKIN 212
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVEL 232
+ + K ++ GD++SV G GRIKI + T+KGK VE+
Sbjct: 213 YQEIDKKDFSVGAGDLISVRGFGRIKILSLLGLTKKGKQRVEI 255
>gi|126649713|ref|ZP_01721949.1| hypothetical protein BB14905_15985 [Bacillus sp. B14905]
gi|126593432|gb|EAZ87377.1| hypothetical protein BB14905_15985 [Bacillus sp. B14905]
Length = 262
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 9/182 (4%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
G + +AER R+ + +D D + A ++ F H D LG++L G+ R K
Sbjct: 62 GLFNEAERQRMLIYPAYYEPTDKDFQLTAFTLQYPVKFVQLRHPDVLGALLSLGLNRSKF 121
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI----PLLALEYEPPRTKSFK 155
GDI + E QF+V E+A+Y+ L +G V V + PLL E E
Sbjct: 122 GDIRV-SEHQIQFVVAKEVAEYVRLHLTGIGKVKVHVESLKEQEPLLINEDEWLEESHTV 180
Query: 156 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215
T S+R+D + + K+SR K LI+ VRVNWT L+ GDI+S+ G GR+
Sbjct: 181 T---SMRLDVIIATVLKVSRQKAQALITGKKVRVNWTERDAVAFELQEGDILSIRGSGRL 237
Query: 216 KI 217
KI
Sbjct: 238 KI 239
>gi|357636717|ref|ZP_09134592.1| S4 domain protein [Streptococcus macacae NCTC 11558]
gi|357585171|gb|EHJ52374.1| S4 domain protein [Streptococcus macacae NCTC 11558]
Length = 264
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 7/221 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAALSI 71
+DF+ P +K M + D++ Y +E RL + + E +D +I + L I
Sbjct: 37 TDFINPRQVK-VMQTIISQTDLQVYLSSDYIPSEYARLLIAPVYYELDIADFEI-SLLEI 94
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
N F +H LG++L G+ R+ +GDII+Q E+ AQF + + YL + K+G
Sbjct: 95 NYNNKFNRLTHAQILGTLLNKLGVKRQILGDIIVQ-ERRAQFFIESSMVSYLTAQVSKIG 153
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+VS ++ L P + +S+R+D + S+ K+SR LI V++N
Sbjct: 154 KAAVSFKKLELNEQLENPSDYTEVDILVSSMRLDKVISSVLKVSRGTASKLIEGEKVKLN 213
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
+ +K + GD+VS+ G GR + N ++ GK+ +
Sbjct: 214 YLVQSKISCLVEVGDLVSIRGYGRFILKRDNGFSKSGKYKL 254
>gi|392957451|ref|ZP_10322974.1| hypothetical protein A374_11955 [Bacillus macauensis ZFHKF-1]
gi|391876414|gb|EIT85011.1| hypothetical protein A374_11955 [Bacillus macauensis ZFHKF-1]
Length = 257
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 5/220 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP--EALTSDPDIVAALSI 71
+DFL P + + K AD GG +ER R + H E SD ++ + I
Sbjct: 34 TDFLDPREQDIATSIIGKDADSSLSFWGGSSHSERRRALIHHAYLEPKPSDFEL-SVFEI 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H D LG+++ G+ R K GDI+ + Q V E+ D++ ++ K+G
Sbjct: 93 QYPTKFSSLEHRDVLGALMNIGVKRSKFGDIV-HSQDRLQVTVANEIKDFIAMNVTKIGR 151
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
SV+ + A + R +SLR+D + + + LSRSK I++ V+VNW
Sbjct: 152 TSVTLQLVEEGAYLHPEERYVEKAGTVSSLRLDVMIAEVYGLSRSKAAPFITSSKVKVNW 211
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
V L+ GD +S+ G GR K+ + + T+K K+ +
Sbjct: 212 RKVEDPSFPLQQGDYISLRGFGRSKLLHVGDKTKKDKWRI 251
>gi|125624828|ref|YP_001033311.1| hypothetical protein llmg_2056 [Lactococcus lactis subsp. cremoris
MG1363]
gi|124493636|emb|CAL98623.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
Length = 239
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 8/226 (3%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAA 68
V+ + FL P + E + L +V+ + Q E ++ + P D D +A
Sbjct: 10 VISTFFLNPREV-EILKTLANKREVQVFSSAELAQTELVKIILA-PNFYVLDKDDFDIAL 67
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I+ F SH LG+ LG G+ R+++GDII+ K Q V L + S++
Sbjct: 68 LEISYAIKFVQISHAQVLGTFLGQAGVKRQELGDIIVTDRK-IQIFVSKHLVESF-KSID 125
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V I L L R + LR+D + + FK+SR+ N++ + V
Sbjct: 126 KIGRAAVKIDEISLTDLAQNTERAIQEVVLLDGLRIDKMIAIAFKISRNIATNMLESKKV 185
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVEL 232
++N+ + K ++ GD++SV G GRIKI + T+KGK VE+
Sbjct: 186 KINYQEIDKKDFSVGAGDLISVRGFGRIKILSLLGLTKKGKQRVEI 231
>gi|340399072|ref|YP_004728097.1| cell division protein, contains S4-like domain [Streptococcus
salivarius CCHSS3]
gi|387761540|ref|YP_006068517.1| RNA binding protein [Streptococcus salivarius 57.I]
gi|338743065|emb|CCB93573.1| cell division protein, contains S4-like domain [Streptococcus
salivarius CCHSS3]
gi|339292307|gb|AEJ53654.1| RNA binding protein [Streptococcus salivarius 57.I]
Length = 267
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 16/228 (7%)
Query: 14 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAA 68
+DFL P + +E+LA ++K E R+ + PE D D +
Sbjct: 38 TDFLNP----REIQIVEELAHYYNLKFFVSSTLESEEYGRVILA-PEYYELDDDDFEIKR 92
Query: 69 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I+ F +H LG+++ G+ R+ GDIIL E QF + LA Y I ++
Sbjct: 93 LEISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFSIASHLASYAIMTIT 152
Query: 128 KVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
K+GNVSV+ + + + ++SF + +S+R+D + + LSRS + LI++G
Sbjct: 153 KIGNVSVTLKEVSKDDWISNQENYSQSF-VLLSSMRLDNVLATVLNLSRSNALKLIASGK 211
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
V++N+ + K T+ GD++SV G GR ++ + + + K K +E
Sbjct: 212 VKLNYRQIEKANQTVMIGDMISVRGYGRFRLAQQDGFSKSGKAKIVIE 259
>gi|404408464|ref|YP_006691179.1| RNA-binding S4 domain-containing protein [Listeria monocytogenes
SLCC2376]
gi|404242613|emb|CBY64013.1| RNA-binding S4 domain protein [Listeria monocytogenes SLCC2376]
Length = 259
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG AER R + +P+ T ++ D ++ I
Sbjct: 36 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEISLFHI 94
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 95 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 153
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 154 VNVMLEETDLANAIYAPVVWEEIGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 213
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+K+ T+K K +E+
Sbjct: 214 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 255
>gi|290892174|ref|ZP_06555170.1| S4 domain-containing protein [Listeria monocytogenes FSL J2-071]
gi|290558297|gb|EFD91815.1| S4 domain-containing protein [Listeria monocytogenes FSL J2-071]
Length = 258
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG AER R + +P+ T ++ D ++ I
Sbjct: 35 TDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALI-YPDYYTPTEADFEISLFHI 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ GDI+ G + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGTEW-QLLVESTMKDYLTLQLEKIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 153 VNVMLEETDLANAIYAPVVWEEIGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+K+ T+K K +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEI 254
>gi|167745612|ref|ZP_02417739.1| hypothetical protein ANACAC_00304 [Anaerostipes caccae DSM 14662]
gi|167654924|gb|EDR99053.1| S4 domain protein [Anaerostipes caccae DSM 14662]
Length = 250
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 114/236 (48%), Gaps = 15/236 (6%)
Query: 11 VLHSDFLTPPVLKESMMAL-----EKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI 65
++S + P L E +L ++L+ A GG+ +RC + G E + +I
Sbjct: 18 FMNSVYTHTPFLSEREQSLFHEMRQELSFADASLYGGHEDYDRCIVVFGSKEMFGYEGEI 77
Query: 66 -VAALSITGNFG--FQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQFLVVPELADY 121
+A I+ F + +H D+LG+++ GI R +IGDI++ GE A +A++
Sbjct: 78 PLACAKISPLFKKFAETLTHRDYLGALMNLGIERNQIGDILISDGE--AYVFCFRHMAEF 135
Query: 122 LITSLEKVGNVSVSCTRIPLLALEY-EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
L L KV N V + + Y + TK +S R+DAL F LSRSK ++
Sbjct: 136 LCRELTKVRNTQVETVGVDFKEIHYWQEYSTKD--GFVSSPRLDALVGLAFGLSRSKALS 193
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
L + V + T+N + D++SV G G+ + E+ T+KG+F V+L Y
Sbjct: 194 LFQSQKVFIRGKMETRNSYQAKPEDVISVRGFGKFRFQELGRETKKGRFHVKLQIY 249
>gi|167630162|ref|YP_001680661.1| hypothetical protein HM1_2093 [Heliobacterium modesticaldum Ice1]
gi|167592902|gb|ABZ84650.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
Length = 263
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 5/232 (2%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 63
R + R++V +DFL P + K + L V VA GGY AER RL + E D
Sbjct: 32 RRTHRQQV--TDFLEPYLRKAAQELLRGPGGVLCVADGGYEGAERQRLVLLPDEEDRPDS 89
Query: 64 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLI 123
I L+ G + H D+LG++LG GI REK+GD+ + E+G ++ ++A Y+
Sbjct: 90 RICWVLAEPVRKG-ERIGHRDYLGALLGLGIRREKVGDL-KRTERGCAVVLDCDVARYVE 147
Query: 124 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 183
+V +++ I + + ASLR+DAL +A + LSRS+ +I
Sbjct: 148 AQWRQVRQSALTVRVIDDGTVHAFIDEGEERTITVASLRLDALIAAIWHLSRSRADEVIG 207
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQ 234
G ++VN +T + GDI+S+ G GR + + TRKG+ + + Q
Sbjct: 208 RGLLKVNGLEMTDGSKSADEGDILSLRGFGRAILRAVGGETRKGRIRLTVWQ 259
>gi|227431973|ref|ZP_03913993.1| ribosomal protein S4e [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352258|gb|EEJ42464.1| ribosomal protein S4e [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 265
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 105/216 (48%), Gaps = 5/216 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGN 74
FL P + + AD+ GG AE R + E D + ++ L I
Sbjct: 41 FLNPREQYILNVLVNHAADLAVYFNGGVQGAESQRAILIPKEYPQDDLEFEISLLEIKYP 100
Query: 75 FGFQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQFLVVPELADYLITSLEKVGNVS 133
F H LGS++ +GI+R IGDI+ Q Q ++ ++ Y+ + K+G+V
Sbjct: 101 TKFDDLHHSTILGSMMYSGISRNVIGDILYDQTYSRWQIIIDSKMQHYMQQMVTKIGHVQ 160
Query: 134 VSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+S L L + ++F + +SLR+D + SAGF LSRS LI VRVNW+
Sbjct: 161 LSLIECDLNNVLPHINDWEENFLLL-SSLRLDTVISAGFDLSRSGAKKLIEENQVRVNWS 219
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 227
+ K L GD++SV GR++I ++ ++KGK
Sbjct: 220 EIVKPDAELAIGDVISVRKHGRVQIKLLDGISKKGK 255
>gi|116873458|ref|YP_850239.1| S4 domain-containing protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742336|emb|CAK21460.1| S4 domain protein [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 258
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 71
+DFL P + + ++ GG AER R ++ +P+ T ++ D +A I
Sbjct: 35 TDFLDPRQRYITETVIGGYDEINVQFFGGVAHAERRR-ALIYPDYYTPTEADFEIALFHI 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F +H LG+++ G+ R+ G+I L + Q LV + DYL LEK+G
Sbjct: 94 RYPVKFTTLTHQKILGTLMSLGMKRDIFGNI-LNNDNEWQLLVESSMKDYLTLQLEKIGK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V+V L Y P + +S+R+D + S +SR K L++ G V+VNW
Sbjct: 153 VNVMLEETDLTNAVYAPVVWEEVGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNW 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
TV D++S G GR+K+ T+K K +E+
Sbjct: 213 KTVENPDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRMEI 254
>gi|410495317|ref|YP_006905163.1| RNA-binding protein ylmH [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|410440477|emb|CCI63105.1| Putative RNA-binding protein ylmH [Streptococcus dysgalactiae
subsp. equisimilis AC-2713]
Length = 263
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 13/239 (5%)
Query: 1 MARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 57
M R S + +DFL P +LK +L D+K + Y +E R+ V
Sbjct: 25 MINRVDSHYLLEVTDFLNPREITILK----SLVAPTDLKVFSSTDYYPSEYGRVIVAPDY 80
Query: 58 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLV 114
+ D +A + IT F +HG LG+++ GI R +GDI + E G AQ ++
Sbjct: 81 YDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFV--ETGYAQLMI 138
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 174
+L Y++T++ K+ SVS IPL + + +SLR+D L + K S
Sbjct: 139 NRQLLGYVLTTISKIARASVSLKEIPLNQRINSSNDVQLVDIMVSSLRLDRLVATVLKKS 198
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
R++ + LI V+VN+ V K L GD+VS+ G GR + N T+ G + + L
Sbjct: 199 RAQAMTLIETDKVKVNYRQVHKVADHLAIGDMVSIRGYGRFTLLTDNGLTKNGNYKLTL 257
>gi|433446185|ref|ZP_20410244.1| S4 domain protein [Anoxybacillus flavithermus TNO-09.006]
gi|432000481|gb|ELK21375.1| S4 domain protein [Anoxybacillus flavithermus TNO-09.006]
Length = 257
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 3/219 (1%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAAL-SIT 72
+DFLTP + + DV GG ER R + P ++ D +L SI
Sbjct: 34 TDFLTPREQQIVRSIVGHHDDVHVAFFGGSSSVERKRALLYPPYMQPNEEDFQLSLFSIR 93
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F H D LG++L G+ REK GDII+ + QF+V E+A ++ ++ +G
Sbjct: 94 YPKKFVTLGHRDVLGALLSLGVKREKFGDIIIVDD-VIQFVVAKEIAPFVQMNVTTIGKA 152
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
VS L L + + +SLR+DA+ + F++SR K LI V+VNW
Sbjct: 153 KVSLEEQLLSQLLVVEEQWEEETFTVSSLRLDAILAQCFRISRQKAQALIDQNFVKVNWK 212
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
TV + + GD++S+ G GR ++ I T+K K+ +
Sbjct: 213 TVDQAHMECQEGDLLSLRGYGRCRLQAIVGQTKKEKWRI 251
>gi|164686337|ref|ZP_02210367.1| hypothetical protein CLOBAR_02775 [Clostridium bartlettii DSM
16795]
gi|164601939|gb|EDQ95404.1| S4 domain protein [Clostridium bartlettii DSM 16795]
Length = 179
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ + I GNF F+ SH D+LG++L GI REKIGDII+ + Q +V ++ D++I +
Sbjct: 10 LKVIQIEGNFKFKSISHRDYLGALLNLGIKREKIGDIIIH-DNFCQVVVSEDICDFIIIN 68
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
LEKV V I + + K +SLR+D++ + LSRS+ + LI
Sbjct: 69 LEKVSKNKVKVKEITVKDIIESEQNFKEISFTVSSLRLDSVIGGVYNLSRSESLKLIKGE 128
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGR--IKIGEINSTRKG 226
V V++ + ++T ++SV G GR I+IG++ T+KG
Sbjct: 129 KVHVDYEKIISPSKEIKTNSLISVRGHGRAIIEIGDM--TKKG 169
>gi|336395776|ref|ZP_08577175.1| S4 domain-containing protein [Lactobacillus farciminis KCTC 3681]
Length = 264
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 10/212 (4%)
Query: 14 SDFLTPPVLKESMMA---LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAAL 69
+DFL L+E + + K D+ GG+ AER R V + D D +A
Sbjct: 40 TDFLN---LREQTILNNLINKYDDLYVHYFGGFGNAERVRGIVAPDYFVPQDSDFGIAMY 96
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
I F HG LGS+ G+G+ R++ GDII GE QF V +++Y+ ++K+
Sbjct: 97 EIRYPEKFANLHHGQILGSLTGSGVERDRFGDIITDGE-NWQFFVFDSMSEYIEEQVKKI 155
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
+ + + + + SLR+D++ S + LSR L+ +G V++
Sbjct: 156 DPYKIHLIKKDFSEVLLPKDESVDETVLVQSLRLDSIISTVYDLSRQNSKALVDHGKVQI 215
Query: 190 NWTTVTKNGTT-LRTGDIVSVSGKGRIKIGEI 220
NW V KN + + D +SV G GRI+I +I
Sbjct: 216 NW-VVNKNASAFIAITDTLSVRGFGRIRINDI 246
>gi|339497698|ref|ZP_08658674.1| cell division protein [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 265
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 14/231 (6%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
++A ++ + FL P + + +++++ GG AE R + PE
Sbjct: 28 KQADDDYRLVLTRFLNPREQYILQTLINRQSELQSYLYGGVAGAESQRAIIA-PEVF--- 83
Query: 63 PDI------VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGA-QFLVV 115
DI +A L++ F H LG+++ GI+R+ +GDI+ E+ + Q +V
Sbjct: 84 -DIKLEDFGIALLTVQYPQKFATLHHATILGTLMHLGISRDVVGDILFDAEETSWQIIVD 142
Query: 116 PELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLS 174
++ Y+ ++ K+G V+ + +PL AL + F T+ +SLR+D + S+ F+LS
Sbjct: 143 KKMVAYIQQTVTKIGRVAANLKELPLNEALPVLTNWQEQF-TLMSSLRLDVVISSIFQLS 201
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
RS LI +G V VNW K + GD++SV GR +I ++ K
Sbjct: 202 RSDTKTLIESGQVHVNWMVAQKTNMDVAVGDLISVRKHGRAQIKSLDGRSK 252
>gi|408790502|ref|ZP_11202121.1| hypothetical protein B807_953 [Lactobacillus florum 2F]
gi|408520226|gb|EKK20314.1| hypothetical protein B807_953 [Lactobacillus florum 2F]
Length = 263
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 9/197 (4%)
Query: 41 GGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 97
GG+ AE R + P+ SD ++ ++I F H LG++LGTG+ RE
Sbjct: 65 GGFADAEMQR-GLVFPDYFVPQLSDFEL-QLMAIDYPMRFATIKHYQILGALLGTGVKRE 122
Query: 98 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKT 156
+GD+I +K QF L YL ++L K+G+ +VS + + + L E +T
Sbjct: 123 VLGDVIT-NQKHWQFYCEATLVKYLQSNLTKIGSTTVSVLPVSMSSQLLPEDDSVLVHQT 181
Query: 157 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
++ SLR+D + +A F +SR +L+ +G VR+NW T + L D+VSV G+GR
Sbjct: 182 LQ-SLRIDNVIAAAFHISRQAANDLVRHGQVRLNWFTEERPAEWLTVQDLVSVRGQGRFV 240
Query: 217 IG-EINSTRKGKFAVEL 232
+ E ++KGK L
Sbjct: 241 LQTEDGFSKKGKIKATL 257
>gi|153814895|ref|ZP_01967563.1| hypothetical protein RUMTOR_01110 [Ruminococcus torques ATCC 27756]
gi|317500408|ref|ZP_07958632.1| RNA-binding S4 protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089585|ref|ZP_08338484.1| hypothetical protein HMPREF1025_02067 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438901|ref|ZP_08618522.1| hypothetical protein HMPREF0990_00916 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145847926|gb|EDK24844.1| S4 domain protein [Ruminococcus torques ATCC 27756]
gi|316898163|gb|EFV20210.1| RNA-binding S4 protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404953|gb|EGG84491.1| hypothetical protein HMPREF1025_02067 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017391|gb|EGN47153.1| hypothetical protein HMPREF0990_00916 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 266
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 123/255 (48%), Gaps = 27/255 (10%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRLSVGHP 56
++R A R + +SDFL L E + L L Q GGY AER +++ P
Sbjct: 20 LSRNAYQRDFITYSDFLN---LNEQNI-LHTLPKENLFTQILTFGGYGMAER-QMAAFIP 74
Query: 57 EALTS-------DPDIV-------AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 102
+AL DP ++ L + F + +H D+LGSIL GI R K GDI
Sbjct: 75 DALYLRCGKKELDPALIRYPFKALQVLPLNRKFS-EDLTHRDYLGSILNLGIDRSKTGDI 133
Query: 103 ILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLR 162
+++ F ++ +L + L ++ + SV +P ++Y P + T+ AS+R
Sbjct: 134 LIENNTAILF-AHDDIVSFLCSELTRIRHTSVKTEELPSFDIQYTPKYEELTGTV-ASVR 191
Query: 163 VDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-N 221
+D+L S F SR+KL LI G V VN +T NG GD++SV G+ + I N
Sbjct: 192 LDSLLSLAFSSSRTKLSGLIEGGRVFVNGKLITSNGYQPNEGDLISVRKMGKFRFAGIGN 251
Query: 222 STRKGKFAVELIQYL 236
TRK + V + +Y+
Sbjct: 252 KTRKHRIYVRIQKYI 266
>gi|402839267|ref|ZP_10887760.1| hypothetical protein HMPREF1143_1598 [Eubacteriaceae bacterium
OBRC8]
gi|402270806|gb|EJU20064.1| hypothetical protein HMPREF1143_1598 [Eubacteriaceae bacterium
OBRC8]
Length = 261
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 6/229 (2%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 68
++ +DF+ P + + L ++ + A GG +ER ++ + +P+ + V
Sbjct: 35 DIRRTDFMNPYEQRLFISVLNAFSNEISYQAVGGNENSER-KMFLIYPDYIYEVELPVKL 93
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLE 127
L + GNF F+ SH D LG+++ GI REKIGDI + K +V+ E + +Y+I+++
Sbjct: 94 LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH--KDFIDVVIDEAIGNYMISNIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+ + S+ +P+ L +SLR+D + + F LSR+ +++I + V
Sbjct: 152 SIRHCSIKGKILPIEELTETEIELVKKDYSVSSLRIDNIIAEAFNLSRASAISVIKSERV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
+VN+ V + ++SV G GR N ++KGK + L Y
Sbjct: 212 KVNYEPVFSQSKEIEENSLISVKGYGRFVFISSNGLSKKGKIRISLAHY 260
>gi|293400860|ref|ZP_06645005.1| YlmH protein [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305886|gb|EFE47130.1| YlmH protein [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 251
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 94/192 (48%), Gaps = 4/192 (2%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 100
GGY AERCR ++ E +D I L T + F +H D LG+IL GI REKIG
Sbjct: 59 GGYQGAERCRYALLPYEDELADLKI-TILKATYSPQFGKLAHPDVLGAILNLGIEREKIG 117
Query: 101 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 160
D+I++ + F V E+ +Y++ +L ++ +V R + YEP K + +S
Sbjct: 118 DLIVKDNELIIF-VDEEIENYIVCNLTRIKRSNVHFKRYEG-EVTYEPKIRYEHKIV-SS 174
Query: 161 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 220
LR+D L S+ +SR K LI G V+VN + + +S+ G GR EI
Sbjct: 175 LRLDVLVSSFANISRKKAQELIRAGLVKVNHVILEETSYLCNNNSAISIRGHGRFHFKEI 234
Query: 221 NSTRKGKFAVEL 232
T K V L
Sbjct: 235 VKTTKKDHLVIL 246
>gi|387783869|ref|YP_006069952.1| cell division protein, contains S4-like domain [Streptococcus
salivarius JIM8777]
gi|338744751|emb|CCB95117.1| cell division protein, contains S4-like domain [Streptococcus
salivarius JIM8777]
Length = 267
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 14/227 (6%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVA--QGGYPQAERCRLSVGHPEALT-SDPDI-VAAL 69
+DFL P + +E+LA + P++E + PE D D + L
Sbjct: 38 TDFLNP----REIQIVEELAHYYNLKFFVSSTPESEEYGRVILAPEYYELDDEDFEIKRL 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
I+ F +H LG+++ G+ R+ GDIIL E QF + LA Y I ++ K
Sbjct: 94 EISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFSIASHLASYAIMTITK 153
Query: 129 VGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+GNVSV+ + + + ++SF + +S+R+D + + LSRS + LI++G V
Sbjct: 154 IGNVSVTLKEVSKDDWISNQENYSQSF-VLLSSMRLDNVLATVLNLSRSNALKLIASGKV 212
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
++N+ + K T+ GD++SV G GR ++ + + + K K +E
Sbjct: 213 KLNYRQIEKANQTVMIGDMISVRGYGRFRLAQQDGFSKSGKAKIVIE 259
>gi|55820805|ref|YP_139247.1| hypothetical protein stu0739 [Streptococcus thermophilus LMG 18311]
gi|418027555|ref|ZP_12666188.1| RNA binding protein [Streptococcus thermophilus CNCM I-1630]
gi|55736790|gb|AAV60432.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|354691639|gb|EHE91557.1| RNA binding protein [Streptococcus thermophilus CNCM I-1630]
Length = 266
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 38 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 96 SYARQFNELTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155
Query: 131 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
VSV+ + + + ++SF + +S+R+D + S K SRS + LI++G +++
Sbjct: 156 RVSVTLREVSKDEWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLIASGKIKL 214
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
N+ + K+ + GD++SV G GR ++G+ I+ + K K ++
Sbjct: 215 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 259
>gi|228476829|ref|ZP_04061474.1| RNA binding protein [Streptococcus salivarius SK126]
gi|228251403|gb|EEK10548.1| RNA binding protein [Streptococcus salivarius SK126]
Length = 267
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 14/227 (6%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVA--QGGYPQAERCRLSVGHPEALT-SDPDI-VAAL 69
+DFL P + +E+LA + P++E + PE D D + L
Sbjct: 38 TDFLNP----REIQIVEELAHYYNLKFFVSSTPESEEYGRVILAPEYYELDDEDFEIKRL 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
I+ F +H LG+++ G+ R+ GDIIL E QF + LA Y I ++ K
Sbjct: 94 EISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFSIASHLASYAIMTITK 153
Query: 129 VGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+GNVSV+ + + + ++SF + +S+R+D + + LSRS + LI++G V
Sbjct: 154 IGNVSVTLKEVSKDDWISNQENYSQSF-VLLSSMRLDNVLATVLNLSRSNALKLIASGKV 212
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
++N+ + K T+ GD++SV G GR ++ + + + K K +E
Sbjct: 213 KLNYRQIEKANQTVMIGDMISVRGYGRFRLAQRDGFSKSGKAKIVIE 259
>gi|197301723|ref|ZP_03166793.1| hypothetical protein RUMLAC_00449 [Ruminococcus lactaris ATCC
29176]
gi|197299163|gb|EDY33693.1| S4 domain protein [Ruminococcus lactaris ATCC 29176]
Length = 270
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 106/210 (50%), Gaps = 17/210 (8%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPC-------------SHGDFLG 87
GGY AER +++ PEAL+ L + FQ +H DFLG
Sbjct: 64 GGYASAER-QMAAFIPEALSLRYGKKNLLPEELGYPFQAVEICPRNIRFAEDLTHRDFLG 122
Query: 88 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 147
+IL GI R + GDI+L+ E A E+A+ + L V + V C L +EY
Sbjct: 123 AILNLGIERSRTGDILLE-EHRAYLFAQTEIAELVSRELSNVRHTPVKCRLTELEGVEY- 180
Query: 148 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 207
PRT++ + +S+R+D+L F SRS+L LI V VN +T NG ++ D++
Sbjct: 181 VPRTEAVRGTVSSVRLDSLLPLAFSSSRSRLSGLIEGAKVFVNGKLITSNGYQVKENDLI 240
Query: 208 SVSGKGRIK-IGEINSTRKGKFAVELIQYL 236
SV G G+ + IG T+K + +VE+ +Y+
Sbjct: 241 SVRGMGKFRYIGTGGKTKKNRLSVEIERYI 270
>gi|339451076|ref|ZP_08654446.1| S4 domain-containing protein [Leuconostoc lactis KCTC 3528]
Length = 263
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+A L I F H LG+++ GI R +GDI+ Q ++ Q +V ++ Y+ +
Sbjct: 92 LAVLEINYPTKFTELHHAAILGALMHAGIKRAVVGDILGQDQRW-QIIVDSKMLTYIQQT 150
Query: 126 LEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+ +G V ++ T +PL A+ + ++F T+ SLR+DA+ +A F +SRS LI+
Sbjct: 151 VTMIGRVKITWTVLPLTQAITAQDDWEETF-TLLPSLRLDAVIAATFDISRSLAKTLITQ 209
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
VR+NW T K T+ GD++SV GR+K+ ++ K
Sbjct: 210 QQVRLNWVTQAKPDHTVEVGDLISVRKYGRVKLAILDGYSK 250
>gi|295100786|emb|CBK98331.1| Uncharacterized conserved protein, contains S4-like domain
[Faecalibacterium prausnitzii L2-6]
Length = 273
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 10/203 (4%)
Query: 40 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
+GG+P AER L + + + P L G Q H D+LGS++G + RE +
Sbjct: 74 EGGWPDAERRVLCLEPEDCCPASPVCCVRLRCRALAGAQLPVHKDYLGSLMGLELRREAL 133
Query: 100 GDIILQGEK-GAQFLVVPELADYLITS-LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 157
GDI+L E+ G +L E A LI L VG V+ + LAL+ P ++ + +
Sbjct: 134 GDIVLPPEEPGVAYLFALEPAAALICQELRSVGRTEVTAQQ---LALDEVPEFAQAERRL 190
Query: 158 E----ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 213
+ +SLR+DA+ +A + SR L++ G V +N V+ + D+ +V GKG
Sbjct: 191 QTATVSSLRLDAVLAAMLRCSRGMAAELVAAGRVEINHLPVSSAHAPVYESDVFTVRGKG 250
Query: 214 RIKIGEI-NSTRKGKFAVELIQY 235
R ++ + ++K + +E QY
Sbjct: 251 RFRLTALPGKSKKDRQIIEFFQY 273
>gi|163814735|ref|ZP_02206124.1| hypothetical protein COPEUT_00886 [Coprococcus eutactus ATCC 27759]
gi|158450370|gb|EDP27365.1| hypothetical protein COPEUT_00886 [Coprococcus eutactus ATCC 27759]
Length = 301
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A A ++ +++FL+ + +++L+ V GG ER ++ G+
Sbjct: 56 LANAAYTQNRYTYTNFLSAADIDVFYSNMDELSFVGYKLFGGREGCERVMIAFGNESDCG 115
Query: 61 SDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-----QGEKGAQ 111
+P IV A ++ F + +H DFLG+++ GI RE IGDI++ G+ A
Sbjct: 116 YEPTFPIAIVKAAAVQDKFS-EDLNHRDFLGALMNLGIEREMIGDILVAESSKTGKHSAA 174
Query: 112 FLVVPE-LADYLITSLEKVGNVSVSCTRI-PLLALEYEPPRTKSFKTIEASLRVDALASA 169
++ E +ADY++ SL ++ + ++ C+ P E + + K I AS R DA+ +
Sbjct: 175 YIFCAESIADYIVESLTRIRHTNMRCSICSPEDTGEIQLQK-KPMHIIAASARADAVTAT 233
Query: 170 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKF 228
LSRS L +N + L++GDI S+ G G+ + E + TRKG+
Sbjct: 234 ITGLSRSNTSLLFREKKFTLNNRLYENSSYQLKSGDIFSIRGYGKYEFVESGTVTRKGRL 293
Query: 229 AVELIQYL 236
+EL++Y+
Sbjct: 294 NIELLKYV 301
>gi|322372692|ref|ZP_08047228.1| YlmH protein [Streptococcus sp. C150]
gi|321277734|gb|EFX54803.1| YlmH protein [Streptococcus sp. C150]
Length = 267
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 107/212 (50%), Gaps = 11/212 (5%)
Query: 14 SDFLTPPVLKESMMALEKLAD---VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAAL 69
+DFL P + +E LA+ +K E R+ + SD D + L
Sbjct: 38 TDFLNP----REIQIVEDLANYYQLKFFVSSNLETEEYRRVIIAPDYYELSDDDFEIKRL 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
++ F +H LG+++ G+ R+ GDII+ + QF + LA+Y I +++K
Sbjct: 94 EVSYARQFNTLTHPKVLGTLINQLGLERQVFGDIIINDDGRIQFSIASHLANYAIMTIKK 153
Query: 129 VGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+GNVSV+ + + + + SF + +S+R+D + + LSRS+ + LIS+G V
Sbjct: 154 IGNVSVTLKDVSEGNWITNQENYSHSF-VLLSSMRLDNVLATVLNLSRSRALKLISSGKV 212
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
++N+ V K + GD++SV G GR ++ E
Sbjct: 213 KLNYRQVEKADQLITIGDMISVRGFGRFRLAE 244
>gi|445375291|ref|ZP_21426482.1| hypothetical protein IQ5_03686 [Streptococcus thermophilus MTCC
5460]
gi|444750373|gb|ELW75191.1| hypothetical protein IQ5_03686 [Streptococcus thermophilus MTCC
5460]
Length = 266
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 38 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 96 SYARQFNELTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155
Query: 131 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
VSV+ + + + ++SF + +S+R+D + S K SRS + LI++G +++
Sbjct: 156 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLIASGKIKL 214
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
N+ + K+ + GD++SV G GR ++G+ I+ + K K ++
Sbjct: 215 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 259
>gi|317472791|ref|ZP_07932102.1| S4 domain-containing protein [Anaerostipes sp. 3_2_56FAA]
gi|316899710|gb|EFV21713.1| S4 domain-containing protein [Anaerostipes sp. 3_2_56FAA]
Length = 250
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 13/235 (5%)
Query: 11 VLHSDFLTPPVLKESMMAL-----EKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI 65
++S + P L E +L ++L+ A GG+ +RC + G E + +I
Sbjct: 18 FMNSVYTHTPFLSEREQSLFHEMRQELSFADASLYGGHEDYDRCIVVFGSKEMFGYEGEI 77
Query: 66 -VAALSITGNFG--FQPCSHGDFLGSILGTGIAREKIGDIIL-QGEKGAQFLVVPELADY 121
+A I+ F + +H D+LG+++ GI R +IGDI++ GE A +A +
Sbjct: 78 PLACAKISPLFKKFAETLTHRDYLGALMNLGIERNQIGDILISDGE--AYVFCFRHMAGF 135
Query: 122 LITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNL 181
L L KV N V + + Y + +S R+DAL F LSRSK ++L
Sbjct: 136 LCRELTKVRNTQVETVGVDFKEIHYRQEYSTK-DGFVSSPRLDALVGLAFGLSRSKALSL 194
Query: 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQY 235
+ V + T+N + D++SV G G+ + E+ T+KG+F V+L Y
Sbjct: 195 FQSQKVFIRGKMETRNSYQAKPEDVISVRGFGKFRFQELGRETKKGRFHVKLQIY 249
>gi|387909514|ref|YP_006339820.1| cell division protein [Streptococcus thermophilus MN-ZLW-002]
gi|387574449|gb|AFJ83155.1| cell division protein [Streptococcus thermophilus MN-ZLW-002]
Length = 266
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 38 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 96 SYARQFNKLTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155
Query: 131 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
VSV+ + + + ++SF + +S+R+D + S K SRS + LI++G +++
Sbjct: 156 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLIASGKIKL 214
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
N+ + K+ + GD++SV G GR ++G+
Sbjct: 215 NYRQIEKSDQIISIGDMISVRGFGRFRLGQ 244
>gi|345021943|ref|ZP_08785556.1| hypothetical protein OTW25_11484 [Ornithinibacillus scapharcae
TW25]
Length = 249
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 98/188 (52%), Gaps = 2/188 (1%)
Query: 41 GGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GG +ER R + + E +T++ ++ + + + F +H D LG+ L GI+R+K+
Sbjct: 62 GGGSHSERKRAIIAPYYEEITNNTFNISLIQASYHEKFITIAHRDVLGAFLSLGISRKKL 121
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GD+ G+ Q L+ ++A Y+ +L + +++ + L + + I +
Sbjct: 122 GDL-YAGDGKIQILLDKDIASYVQMNLTGIKRATITFEEVSFDKLIEQKSVWNESEKIVS 180
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+D + + LSR + +LI G V+VN+ V LR GD++S+ GKGR K+ E
Sbjct: 181 SLRLDTILKEIYNLSRKQAQDLIQKGMVKVNYRLVEDGKFILREGDLISLRGKGRSKLVE 240
Query: 220 INSTRKGK 227
+N K K
Sbjct: 241 VNGQTKKK 248
>gi|116627609|ref|YP_820228.1| cell division protein [Streptococcus thermophilus LMD-9]
gi|386086417|ref|YP_006002291.1| Cell division protein, contains S4-like domain [Streptococcus
thermophilus ND03]
gi|116100886|gb|ABJ66032.1| Cell division protein, contains S4-like domain [Streptococcus
thermophilus LMD-9]
gi|312278130|gb|ADQ62787.1| Cell division protein, contains S4-like domain [Streptococcus
thermophilus ND03]
Length = 266
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 38 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 96 SYARQFNKLTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155
Query: 131 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
VSV+ + + + ++SF + +S+R+D + S K SRS + LI++G +++
Sbjct: 156 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLIASGKIKL 214
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
N+ + K+ + GD++SV G GR ++G+ I+ + K K ++
Sbjct: 215 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 259
>gi|373451744|ref|ZP_09543663.1| hypothetical protein HMPREF0984_00705 [Eubacterium sp. 3_1_31]
gi|371967965|gb|EHO85432.1| hypothetical protein HMPREF0984_00705 [Eubacterium sp. 3_1_31]
Length = 251
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 95/192 (49%), Gaps = 4/192 (2%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 100
GGY AERCR ++ E +D I L T + F +H D LG+IL GI REKIG
Sbjct: 59 GGYQGAERCRYALLPYEDELADLKI-TILKATYSPQFGKLAHPDVLGAILNLGIEREKIG 117
Query: 101 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 160
D+I++ + F V E+ +Y++ +L ++ +V R + YEP + + I +S
Sbjct: 118 DLIVKDNELIIF-VDEEIENYIVCNLTRIKRSNVHFKRYEG-EVTYEP-KIRYEHKIVSS 174
Query: 161 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 220
LR+D L S+ +SR K LI G V+VN + + +S+ G GR EI
Sbjct: 175 LRLDVLVSSFANISRKKAQELIRAGLVKVNHVILEETSYLCNNNSAISIRGHGRFYFKEI 234
Query: 221 NSTRKGKFAVEL 232
T K V L
Sbjct: 235 VKTTKKDHLVIL 246
>gi|445389778|ref|ZP_21428199.1| hypothetical protein IQ7_03749 [Streptococcus thermophilus MTCC
5461]
gi|444750266|gb|ELW75093.1| hypothetical protein IQ7_03749 [Streptococcus thermophilus MTCC
5461]
Length = 230
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 2 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 59
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 60 SYARQFNELTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 119
Query: 131 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
VSV+ + + + ++SF + +S+R+D + S K SRS + LI++G +++
Sbjct: 120 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLIASGKIKL 178
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
N+ + K+ + GD++SV G GR ++G+ I+ + K K ++
Sbjct: 179 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 223
>gi|363895505|ref|ZP_09322500.1| hypothetical protein HMPREF9629_00782 [Eubacteriaceae bacterium
ACC19a]
gi|361957257|gb|EHL10567.1| hypothetical protein HMPREF9629_00782 [Eubacteriaceae bacterium
ACC19a]
Length = 261
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 114/229 (49%), Gaps = 6/229 (2%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 68
++ +DF+ P + + L ++ + A GG +ER ++ + +P+ + +
Sbjct: 35 DIRRTDFMNPYEQRLFISVLNAFSNEISCQAVGGNENSER-KMFLIYPDYIYEVELPIKL 93
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLE 127
L + GNF F+ SH D LG+++ GI REKIGDI + K +V+ E + +Y+I+++
Sbjct: 94 LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH--KDFIDVVIDEAIGNYMISNIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+ + S+ +P+ L +SLR+D + + F LSR+ +++I + V
Sbjct: 152 SIRHCSIKGKILPIEELTETEIELVKKDYSVSSLRLDNIIAEAFNLSRASAISVIKSERV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
+VN+ V + ++SV G GR N ++KGK + L Y
Sbjct: 212 KVNYEPVFSQSKEIEENSLISVKGYGRFVFISSNGLSKKGKIRISLAHY 260
>gi|422824075|ref|ZP_16872263.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK405]
gi|422825850|ref|ZP_16874029.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK678]
gi|324993402|gb|EGC25322.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK405]
gi|324995286|gb|EGC27198.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK678]
Length = 261
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 8/209 (3%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGS 88
K DV+ A GY +E R+ V P L D ++ L I+ F SH +G+
Sbjct: 52 KQYDVQVFASSGYYPSELARVLVA-PSYYQLNMDDFELSLLEISYASKFYKISHSQIMGT 110
Query: 89 ILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 147
+L GI R GDI++ G++ AQ V LA Y I + K+ + V + L E
Sbjct: 111 LLNHLGIERRTFGDILVVGDR-AQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAELLKE 169
Query: 148 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 207
+ + + + +SLR+D L ++ FKLSR++ LIS V++N+ + D++
Sbjct: 170 QKQAVTREILASSLRLDKLVASTFKLSRNQAAQLISGKHVKMNYAVNDNPSQQVGLEDLI 229
Query: 208 SVSGKGRIKIGEINSTRKG---KFAVELI 233
SV GR K+ N K K VEL+
Sbjct: 230 SVRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|187934764|ref|YP_001886623.1| S4 domain-containing protein [Clostridium botulinum B str. Eklund
17B]
gi|187722917|gb|ACD24138.1| S4 domain protein [Clostridium botulinum B str. Eklund 17B]
Length = 254
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 15/230 (6%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
V + F +P + K E + K +G + ER +S + + P + L
Sbjct: 34 VFGNYFYSPKIWKWFKENCE-TSKFKVTCEGIFKNCERKMISFNN---IYDSPFPIKLLK 89
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLEKV 129
+ G F H DFLG IL GI R KIGD+I+ E +L + E +A +L+++++K+
Sbjct: 90 VEGKSKFSNLEHKDFLGGILSLGIERNKIGDLIV--EDNVCYLPIHEDIAKFLLSNVDKI 147
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNLISNGD 186
G S T I E + P K FK + +SLR+D + S KLSR+K LI G
Sbjct: 148 GKTPCSITEI---QNEGDFPEIK-FKEDIILISSLRIDGIVSKISKLSRAKAQMLIDQGQ 203
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 235
V +++ V ++ + + + G G+ IGE I S++ GK+ + + +Y
Sbjct: 204 VLIDYIKVKDKSYEVKIDERIVIRGIGKFIIGEVIGSSKSGKYKLIIKKY 253
>gi|299535882|ref|ZP_07049202.1| hypothetical protein BFZC1_07660 [Lysinibacillus fusiformis ZC1]
gi|424738822|ref|ZP_18167251.1| hypothetical protein C518_3366 [Lysinibacillus fusiformis ZB2]
gi|298728634|gb|EFI69189.1| hypothetical protein BFZC1_07660 [Lysinibacillus fusiformis ZC1]
gi|422947306|gb|EKU41703.1| hypothetical protein C518_3366 [Lysinibacillus fusiformis ZB2]
Length = 262
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 9/188 (4%)
Query: 35 VKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 92
+K G + +AER R+ + + EA+ D +VA +I F H D LG++L
Sbjct: 56 LKTACTGLFEEAERQRMLIFPTYYEAIEEDFQLVA-FTIQYPVKFVQLRHPDVLGALLSL 114
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV---SCTRIPLLALEYEPP 149
G+ R K GDI + ++ QF+V E+A+Y+ L +G V V S L + E
Sbjct: 115 GLNRGKFGDIRV-NDQQVQFVVAQEVAEYVRLHLTGIGKVKVHIESLKEADSLIVNEEEW 173
Query: 150 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 209
+S +S+R+D + + +SR K LI+ VRVNWT L+ GDI+S+
Sbjct: 174 LEESHTV--SSMRLDVIIATVLNVSRQKAQALITGKKVRVNWTERDTVAFELQEGDILSI 231
Query: 210 SGKGRIKI 217
G GR+KI
Sbjct: 232 RGSGRVKI 239
>gi|421187378|ref|ZP_15644738.1| cell division protein [Oenococcus oeni AWRIB419]
gi|421193757|ref|ZP_15651003.1| cell division protein [Oenococcus oeni AWRIB553]
gi|399969177|gb|EJO03600.1| cell division protein [Oenococcus oeni AWRIB419]
gi|399971916|gb|EJO06155.1| cell division protein [Oenococcus oeni AWRIB553]
Length = 256
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 7/203 (3%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGN 74
FL P K ++ L K GGY +AE R +G H E +D I + L +
Sbjct: 38 FLNPQEQK-ILLELAKKTGFSVRFDGGYQKAENKRALIGDHKE---NDFQI-SLLQLNYA 92
Query: 75 FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV 134
+ H LGS+L GI+ ++IGD+I + + Q L+ LAD+++ ++++ + +
Sbjct: 93 SHYVHLHHSTVLGSLLHHGISYDRIGDVIHEND-NWQLLIDSSLADFVVENVKRAASKKI 151
Query: 135 SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTV 194
+ +IP + K + + +S R+D L S + SR+ +LI +G V VNW
Sbjct: 152 TFEKIPFEKILNPQSDEKEKEIVISSQRIDLLISQIYNFSRAHAKDLIESGQVMVNWFEK 211
Query: 195 TKNGTTLRTGDIVSVSGKGRIKI 217
+ GD+VS G GRI++
Sbjct: 212 DNTSYLAKLGDVVSTHGYGRIRL 234
>gi|363889582|ref|ZP_09316942.1| hypothetical protein HMPREF9628_00269 [Eubacteriaceae bacterium
CM5]
gi|361966649|gb|EHL19548.1| hypothetical protein HMPREF9628_00269 [Eubacteriaceae bacterium
CM5]
Length = 261
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 6/229 (2%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 68
++ +DF+ P + + L ++ + A GG +ER ++ + +P+ + V
Sbjct: 35 DIRRTDFMNPYEQRLFISVLNAFSNEISYQAVGGNENSER-KMFLIYPDYIYEVELPVKL 93
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLE 127
L + GNF F+ SH D LG+++ GI REKIGDI + K +V+ E + +Y+I+++
Sbjct: 94 LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH--KDFIDVVIDEAIGNYMISNIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+ + S+ +P+ L +SLR+D + + F LSR+ +++I + V
Sbjct: 152 SIRHCSIKGKILPIEELTETEIELVKKDYSVSSLRLDNIIAEAFNLSRASAISVIKSERV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
+VN+ V + ++SV G GR N ++KGK + L Y
Sbjct: 212 KVNYEPVFSQSKEIEENSLISVKGYGRFVFISSNGLSKKGKIRISLAHY 260
>gi|422876956|ref|ZP_16923426.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1056]
gi|332361764|gb|EGJ39568.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1056]
Length = 261
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 97/208 (46%), Gaps = 6/208 (2%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 89
K DV+ A Y +E R+ V L D ++ L I+ F SH +G++
Sbjct: 52 KQYDVQVFASSDYFPSELARVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTL 111
Query: 90 LGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 148
L GI R GDI++ G++ AQ V LA Y I + KV + V + L E
Sbjct: 112 LNQLGIERRTFGDILVVGDR-AQLFVAKRLAQYFIDHVTKVAKMPVKLKEVSFAELLKEQ 170
Query: 149 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVS 208
+ + + + +SLR+D L ++ FKLSRS+ LIS V++N+ + D++S
Sbjct: 171 KQAVTREILASSLRLDKLVASTFKLSRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLIS 230
Query: 209 VSGKGRIKIGEINSTRKG---KFAVELI 233
V GR K+ N K K VEL+
Sbjct: 231 VRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|399888859|ref|ZP_10774736.1| RNA binding protein [Clostridium arbusti SL206]
Length = 256
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 116/234 (49%), Gaps = 8/234 (3%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD 64
A + V ++F TP + + + L L ++ G + +ER + + E +++ P
Sbjct: 29 AKIEKPVYTNEFYTPDICND-ISKLSDLLGLQISIYGIFENSER-NMLLFSKEKVSNFP- 85
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLI 123
+ + I F H D++G+I+ GI R K GD+I+ E F+ V E ++ Y+I
Sbjct: 86 -INLIKIENKSKFTDLGHRDYMGAIMSLGINRNKFGDLIV--ENNCCFVAVCEDISSYII 142
Query: 124 TSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLIS 183
+L +G S S +++ L + F I +SLR+D L + +SRSK V+LI
Sbjct: 143 DNLTSIGKCSCSISQLELTEDNIPSVNFQEFTIIVSSLRLDCLIGSVCNISRSKAVDLIK 202
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRKGKFAVELIQYL 236
G V +N++ + + + G +++ G G+ KI +I T K + + + +++
Sbjct: 203 KGSVLLNYSIAKEKDSYVPFGTTITIRGHGKYKIASDIGVTGKNRMKIRMKKFV 256
>gi|256842891|ref|ZP_05548379.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
gi|262045857|ref|ZP_06018821.1| cell division protein [Lactobacillus crispatus MV-3A-US]
gi|293381725|ref|ZP_06627706.1| S4 domain protein [Lactobacillus crispatus 214-1]
gi|312977591|ref|ZP_07789338.1| cell-division protein [Lactobacillus crispatus CTV-05]
gi|423317800|ref|ZP_17295697.1| hypothetical protein HMPREF9250_01405 [Lactobacillus crispatus
FB049-03]
gi|423321137|ref|ZP_17299009.1| hypothetical protein HMPREF9249_01009 [Lactobacillus crispatus
FB077-07]
gi|256614311|gb|EEU19512.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
gi|260573816|gb|EEX30372.1| cell division protein [Lactobacillus crispatus MV-3A-US]
gi|290921772|gb|EFD98793.1| S4 domain protein [Lactobacillus crispatus 214-1]
gi|310895330|gb|EFQ44397.1| cell-division protein [Lactobacillus crispatus CTV-05]
gi|405596460|gb|EKB69796.1| hypothetical protein HMPREF9249_01009 [Lactobacillus crispatus
FB077-07]
gi|405597736|gb|EKB70987.1| hypothetical protein HMPREF9250_01405 [Lactobacillus crispatus
FB049-03]
Length = 266
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 9/229 (3%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 65
+ E + +DFL P K +++ D GGYP AE+ R+ + E L P
Sbjct: 34 KHEPILTDFLDPG--KRAILRTIVGNDAFVQEYGGYPNAEKKRVYLSE-EWLNLRPSDYQ 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ I F +H LG++ +GI GDII + QF E+ ++
Sbjct: 91 IQPYEIEYPQKFTKINHSVILGTLANSGIDTSIFGDIINDNQGKWQFFTKKEMTEFFEEQ 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKT--IEASLRVDALASAGFKLSRSKLVNLIS 183
++++G V P+ E P S + I AS+R+DA+ S + SR ++ +I+
Sbjct: 151 IDRIGRAKVKLR--PISFKEVLVPEDDSIEKTKIVASMRIDAVLSGISRQSRGQIQKMIN 208
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+ V++NW + + ++ D++S+ GRI I ++++TRKGK+ V L
Sbjct: 209 SQLVKLNWHEIADSNIMIKEDDVLSLRHFGRILIEDVSTTRKGKYKVVL 257
>gi|419718759|ref|ZP_14246065.1| S4 domain protein [Lachnoanaerobaculum saburreum F0468]
gi|383305099|gb|EIC96478.1| S4 domain protein [Lachnoanaerobaculum saburreum F0468]
Length = 249
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 17/239 (7%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGHPE 57
+AR A + V HS FL M +L ++K+V GGY +AER C P
Sbjct: 15 LARNAYFKNIVTHSTFLNLYEQTIFEMIQNELPNIKSVMFGGYSEAERKIVCFYCEKKP- 73
Query: 58 ALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 115
D D++ +SI N F + SH DFLG+I+ GI R IGDI + + A +
Sbjct: 74 ----DFDMLECISIAPSNKKFAEELSHRDFLGAIMNLGIERHMIGDICVV-DNIAHIITF 128
Query: 116 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS-FKTIEA-SLRVDALASAGFKL 173
++D +I L V + V + +++Y +S +K I S R+D++ + + +
Sbjct: 129 KSMSDTIINELGTVKHTKVVLNK---ESIDYLKTVNRSEYKKINIPSERLDSVIGSIYNI 185
Query: 174 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 231
SRSK+ I G V +N + ++ GDI++V G GR + I+S +RKG+ E
Sbjct: 186 SRSKVNMYIDAGRVFINSKQCLSHSMKVKNGDIITVRGLGRARFLCISSMSRKGRLFAE 244
>gi|153953820|ref|YP_001394585.1| hypothetical protein CKL_1195 [Clostridium kluyveri DSM 555]
gi|219854436|ref|YP_002471558.1| hypothetical protein CKR_1093 [Clostridium kluyveri NBRC 12016]
gi|146346701|gb|EDK33237.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219568160|dbj|BAH06144.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 258
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 6/221 (2%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVA 67
+ + S+F PP L +++ + + + G + AER L E L P V
Sbjct: 32 HKNIFTSEFY-PPNLWKTLEDFKGQVGINVYSHGIFENAERKILVFSQSEVLDY-P--VR 87
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
+ I + F H D+LG+++ GI R K GD+I++ V +++DY+ +L
Sbjct: 88 LMKIKCSSKFVSLQHKDYLGALMALGIKRGKFGDLIVKENNECYAAVHEDISDYVYMNLS 147
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+G + T + E K+F +SLR+D L S+ ++SRSK L+ G V
Sbjct: 148 SIGKCECNITFLDTNITEIPDYNFKTFDINTSSLRIDCLLSSMCRISRSKSEELMKQGKV 207
Query: 188 RVNWTTVTKNGTTLR-TGDIVSVSGKGRIK-IGEINSTRKG 226
+++ VTK T+ +G +++V G G+ K + ++ T++G
Sbjct: 208 LLDYLPVTKKDKTINDSGCVITVRGYGKFKVVKKLGYTKRG 248
>gi|188588620|ref|YP_001921580.1| S4 domain-containing protein [Clostridium botulinum E3 str. Alaska
E43]
gi|188498901|gb|ACD52037.1| S4 domain protein [Clostridium botulinum E3 str. Alaska E43]
Length = 254
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 15/230 (6%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
V +DF +P K E ++ K +G + +ER +S + + P + L
Sbjct: 34 VFGNDFYSPKTWKWFKENCE-TSEFKVTCEGIFKDSERKMISFNN---IYDIPFPIKLLK 89
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLEKV 129
+ G F H DFLG IL GI R KIGD+I+ E +L + E + +L+++++K+
Sbjct: 90 VQGKSKFSNLEHKDFLGGILSLGIERNKIGDLIV--EDNVCYLPIHEDIFKFLLSNVDKI 147
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNLISNGD 186
G S I E + P+ K FK + +SLR+D + S KLSRSK LI G
Sbjct: 148 GRTPCSIAEI---QNEGDFPKIK-FKEDVILISSLRIDGIVSKISKLSRSKAQMLIDQGQ 203
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 235
V +++ + ++ + + + G G+ +GE I S++ GK+ + + +Y
Sbjct: 204 VLIDYNKIKDKSYEVKVDERIVIRGIGKFIVGEVIGSSKSGKYKLIIKKY 253
>gi|421765864|ref|ZP_16202644.1| hypothetical protein C426_0211 [Lactococcus garvieae DCC43]
gi|407625634|gb|EKF52329.1| hypothetical protein C426_0211 [Lactococcus garvieae DCC43]
Length = 265
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 4/173 (2%)
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELA 119
D D+V L I+ + H LGS LG TGI R +IGDI+L E+ AQ V L
Sbjct: 85 DDFDLVL-LEISYANKYYHLKHSQILGSFLGQTGIRRTEIGDIVLNDER-AQIFVSRHLL 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ ++EK+G+ +V P L + + +SLR+D + ++ F++SR+ V
Sbjct: 143 EIFQKNIEKIGSATVQFVEKPFTELIKTEATSIVKVVLVSSLRIDKIVASTFEISRNIAV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVE 231
N++ + V++N+ + K + GD++SV G GRIKI + T+KGK VE
Sbjct: 203 NMLQSRKVKLNYLEIDKKDFPVGQGDLISVRGLGRIKILRLLGETKKGKQKVE 255
>gi|58337123|ref|YP_193708.1| cell-division protein [Lactobacillus acidophilus NCFM]
gi|227903698|ref|ZP_04021503.1| ribosomal protein S4e [Lactobacillus acidophilus ATCC 4796]
gi|58254440|gb|AAV42677.1| cell-division protein [Lactobacillus acidophilus NCFM]
gi|227868585|gb|EEJ76006.1| ribosomal protein S4e [Lactobacillus acidophilus ATCC 4796]
Length = 266
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 7/196 (3%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
GGY AE+ R+ + E + PD + I F +H LG++ +GI +
Sbjct: 65 GGYANAEKKRVYLSE-EWVNLRPDNYQIQPYEIEYPQKFVKITHSSILGTLANSGINTDA 123
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 158
GDII QF EL D+ ++++G V P+ P S + E
Sbjct: 124 FGDIITDDNGTWQFFAKKELTDFFEEQVDRIGRTQVKLK--PISFKNVIVPEDDSIEKTE 181
Query: 159 --ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
AS+RVDA+ S K SR ++ +I + V++NW +T + ++ D++S+ GR+
Sbjct: 182 IIASMRVDAVLSGISKQSRGQIQKMIDSKLVKLNWHDITGSNIMVKEDDVLSLRHFGRVL 241
Query: 217 IGEINSTRKGKFAVEL 232
I +++TRKGK+ V L
Sbjct: 242 IENVSATRKGKYKVVL 257
>gi|363892722|ref|ZP_09319881.1| hypothetical protein HMPREF9630_01959 [Eubacteriaceae bacterium
CM2]
gi|361963025|gb|EHL16116.1| hypothetical protein HMPREF9630_01959 [Eubacteriaceae bacterium
CM2]
Length = 261
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 114/229 (49%), Gaps = 6/229 (2%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 68
++ +DF+ P + + L ++ + A GG +ER ++ + +P+ + +
Sbjct: 35 DIRRTDFMNPYEQRLFISVLNAFSNEISYQAVGGNENSER-KMFLIYPDYIYEVELPIKL 93
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE-LADYLITSLE 127
L + GNF F+ SH D LG+++ GI REKIGDI + K +V+ E + +Y+I+++
Sbjct: 94 LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH--KDFIDVVIDEAIGNYMISNIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+ + S+ +P+ L +SLR+D + + F LSR+ +++I + V
Sbjct: 152 SIRHCSIKGKILPIEELTETEIELVKKDYSVSSLRLDNIIAEAFNLSRASAISVIKSERV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
+VN+ V + ++SV G GR N ++KGK + L Y
Sbjct: 212 KVNYEPVFSQSKEIEENSLISVKGYGRFVFISSNGLSKKGKIRISLAHY 260
>gi|315651408|ref|ZP_07904433.1| ribosomal protein S4e [Lachnoanaerobaculum saburreum DSM 3986]
gi|315486367|gb|EFU76724.1| ribosomal protein S4e [Lachnoanaerobaculum saburreum DSM 3986]
Length = 249
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 17/239 (7%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGHPE 57
+AR A + V HS FL M +L ++K+V GGY +AER C P
Sbjct: 15 LARNAYFKNIVTHSTFLNLYEQTIFEMIQNELPNIKSVMFGGYSEAERKIVCFYCDKKP- 73
Query: 58 ALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 115
D D++ +SI N F + SH DFLG+I+ GI R IGDI + + A +
Sbjct: 74 ----DFDMLECISIAPSNKKFAEELSHRDFLGAIMNLGIERHMIGDICVV-DNIAHIITF 128
Query: 116 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS-FKTIEA-SLRVDALASAGFKL 173
++D +I L V + V + +++Y +S +K I S R+D++ + + +
Sbjct: 129 KSMSDTIINELGTVKHTKVVLNK---ESIDYLKTVNRSEYKKINIPSERLDSVIGSIYNI 185
Query: 174 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 231
SRSK+ I G V +N + ++ GDI++V G GR + I+S +RKG+ E
Sbjct: 186 SRSKVNMYIDAGRVFINSKQCLSHSMKVKNGDIITVRGLGRARFLCISSMSRKGRLFAE 244
>gi|55822706|ref|YP_141147.1| hypothetical protein str0739 [Streptococcus thermophilus CNRZ1066]
gi|55738691|gb|AAV62332.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 266
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 38 TDFLNPREI-QIVKDLAIYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 96 SYARQFNELTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155
Query: 131 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
VSV+ + + + ++SF + +S+R+D + S K SRS + LI++G +++
Sbjct: 156 RVSVTLREVSKDEWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTSRSNALKLIASGKIKL 214
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
N+ + K+ + GD++SV G GR ++G+ I+ + K K ++
Sbjct: 215 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 259
>gi|310659182|ref|YP_003936903.1| RNA binding protein [[Clostridium] sticklandii]
gi|308825960|emb|CBH21998.1| RNA binding protein [[Clostridium] sticklandii]
Length = 261
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 9/223 (4%)
Query: 10 EVLHSDFLTPPVLKESMMALEKLADV--KAVAQGGYPQAERCRLSVGH--PEALTSDPDI 65
++ ++DF+ P K + L+ L + + + P+ ++ + E+L DI
Sbjct: 34 DIRNTDFMNPFEKKNFISILKGLDSIGFRECSPSAMPERSIIQIFPEYIAEESLEKPYDI 93
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ I+GNF F SH D+LG++L GI REK+GDI + E A + ++ Y++ +
Sbjct: 94 I---KISGNFKFNKLSHRDYLGALLALGIKREKLGDIHVH-EACAYIIADKNVSHYIMFN 149
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L + S++ I E P + +S R DA+ S F LSR+K+ I
Sbjct: 150 LTSINKASITAKIIDEDDFEESIPNYQEKIITTSSRRADAVVSEIFNLSRAKIQEYILKE 209
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGK 227
+ V++ T N ++ G ++S+ G GR E I+ T+KG+
Sbjct: 210 RLYVDFELFTTNSREIKDGSLISLKGYGRAIFDEVISETKKGR 252
>gi|418018046|ref|ZP_12657602.1| putative cell division protein [Streptococcus salivarius M18]
gi|345526895|gb|EGX30206.1| putative cell division protein [Streptococcus salivarius M18]
Length = 267
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 16/228 (7%)
Query: 14 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAA 68
+DFL P + +E+LA ++ E R+ + PE D D +
Sbjct: 38 TDFLNP----REIQIVEELAHYYNLNFFVSSTLESEEYGRVILA-PEYYELDDDDFEIKR 92
Query: 69 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I+ F +H LG+++ G+ R+ GDIIL E QF + LA Y I ++
Sbjct: 93 LEISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFSIASHLASYAIMTIT 152
Query: 128 KVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
K+GNVSV+ + + + ++SF + +S+R+D + + LSRS + LI++G
Sbjct: 153 KIGNVSVTLKEVSKDDWISNQENYSQSF-VLLSSMRLDNVLATILNLSRSNALKLIASGK 211
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
V++N+ + K T+ GD++SV G GR ++ + + + K K +E
Sbjct: 212 VKLNYRQIEKANQTVMIGDMISVRGYGRFRLAQQEGFSKSGKAKIVIE 259
>gi|76798282|ref|ZP_00780529.1| ylmH protein [Streptococcus agalactiae 18RS21]
gi|76586354|gb|EAO62865.1| ylmH protein [Streptococcus agalactiae 18RS21]
Length = 179
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
++ + I N F +H +G++L G+ R +GDI+++ E AQ LV ++ ++L+
Sbjct: 6 LSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQMTNHLVH 64
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
S+ K+G SV +PL L + I +SLR+D + + K+SR++ LI
Sbjct: 65 SVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQSTKLIEA 124
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 232
V+VN+ TV + L GD++SV G GR + + T+ K+ +E+
Sbjct: 125 DKVKVNYATVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKLEV 173
>gi|424049918|ref|ZP_17787469.1| S4 domain-containing protein [Streptococcus agalactiae ZQ0910]
gi|389648593|gb|EIM70092.1| S4 domain-containing protein [Streptococcus agalactiae ZQ0910]
Length = 179
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
++ + I N F +H +G++L G+ R +GDI+++ E AQ LV ++ ++L+
Sbjct: 6 LSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQMTNHLVH 64
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
S+ K+G SV +PL L + I +SLR+D + + K+SR++ LI
Sbjct: 65 SVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQSTKLIEA 124
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 232
V+VN+ TV + L GD++SV G GR + + T+ K+ +E+
Sbjct: 125 DKVKVNYATVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKLEV 173
>gi|392426957|ref|YP_006467951.1| hypothetical protein Desaci_3738 [Desulfosporosinus acidiphilus
SJ4]
gi|391356920|gb|AFM42619.1| hypothetical protein Desaci_3738 [Desulfosporosinus acidiphilus
SJ4]
Length = 265
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 105/220 (47%), Gaps = 20/220 (9%)
Query: 24 ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCS-- 81
E ++ E+LA + +GG+P AER R+ +G E D A LSI P +
Sbjct: 53 EGILNKEQLA---YLLEGGFPDAERVRIVIGSREETLDSAD--ANLSILEVLPANPHTQL 107
Query: 82 -HGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIP 140
H LGS++G GI RE +GDI G G E+A +L+ + G +
Sbjct: 108 EHRQILGSLIGLGIGREVLGDI-RAGLSGYYLAASTEIAPFLLDQWKAAGREKIK----- 161
Query: 141 LLALEYEPPRTKS-----FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVT 195
++L +E P S + +S R+DAL + F +SR+ I G VR V+
Sbjct: 162 -VSLCHEKPNILSDVGEQKRVTVSSTRLDALLAHSFGVSRASAQEWIKQGRVRREGLVVS 220
Query: 196 KNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
K L+ G+ +S G+GRI++ E TRK + A +L+ Y
Sbjct: 221 KAELKLQPGETISCRGQGRIRLLECTQTRKERTAWQLVLY 260
>gi|304440209|ref|ZP_07400099.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371258|gb|EFM24874.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 249
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 23/215 (10%)
Query: 12 LHSDFLTP-------PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD 64
+ +DFL P P++ ++ E GGY +AER + + P ++
Sbjct: 33 IDTDFLDPYERSIIRPIIGHNLEYYE---------DGGYDEAERKIIQIYPPYIERTE-- 81
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
LSI SH + LGS+LG G+ REKIGDI+ G+ +V ELA+Y+ +
Sbjct: 82 ---KLSIIKIISKNKISHREILGSVLGLGLVREKIGDIVSNGDFEHYLIVKNELANYIHS 138
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+LEKVGN ++ + + + ++ F + S R+D S F + R + I N
Sbjct: 139 NLEKVGNYKINISFSDKVVCSEKKFVSREF--VVKSKRLDLFISKAFAIRRDLAKSYIEN 196
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
G +VN+ + + + GD+VS+ G GR+ E
Sbjct: 197 GFCKVNFAPIKSASSLINEGDLVSLRGYGRVFYAE 231
>gi|168334455|ref|ZP_02692626.1| RNA-binding S4 [Epulopiscium sp. 'N.t. morphotype B']
Length = 249
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 3/181 (1%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 100
GGYP A R + + + +P + + + FG + +H DFLGSIL GI+R KIG
Sbjct: 55 GGYPXASRSIVCITPFDEPLVNPIAILKIDVKTGFG-KELTHRDFLGSILSLGISRAKIG 113
Query: 101 DIILQGEKGAQFLVVPELADYLITSLEKVGNVS-VSCTRIPLLALEYEPPRTKSFKTIEA 159
DI++ GA ++A+Y+ +L K+ + + + I LE P+ T +
Sbjct: 114 DIVVTS-FGAYVFCHIDVAEYIRFNLSKIARFTKIETSIISNNELEIPVPKFTEITTSVS 172
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLRVD + A F LSR++ LI + ++N + + +++TGD +++ G G++ + E
Sbjct: 173 SLRVDVILCAIFNLSRNESSKLIKSEKAKLNGLVINNSSFSVKTGDTLTLRGYGKLILDE 232
Query: 220 I 220
I
Sbjct: 233 I 233
>gi|312864867|ref|ZP_07725098.1| S4 domain protein [Streptococcus downei F0415]
gi|311099994|gb|EFQ58207.1| S4 domain protein [Streptococcus downei F0415]
Length = 261
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 7/230 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE--A 58
+A+R +DFL P +K + L ++ + + + E ++ + P+
Sbjct: 24 LAKRVQDNYVYQVTDFLDPRQVKIAKSVLGQMG-LTYYLSTDFLKTEYAKIILA-PDYYE 81
Query: 59 LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPE 117
L D +A L I+ N F +H +GS + G+ R GDIIL + AQ LV
Sbjct: 82 LELDDFEIALLEISYNPKFNHLTHSQIMGSFINKLGLERSVFGDIIL-ADNRAQILVKDS 140
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+ Y +S+ K+G +V T++P L K + +S+R+D + ++ FKLSRS
Sbjct: 141 MVAYF-SSVNKIGRAAVKITKVPWSHLLESVNHAKEVDILVSSMRLDKVIASSFKLSRSL 199
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGK 227
L+ + V++N+ +T+ L GD+VSV G GR ++ N K K
Sbjct: 200 ASKLVEHEKVKLNYGLLTRPAELLELGDLVSVRGYGRFEVFRDNGLSKNK 249
>gi|406837717|ref|ZP_11097311.1| cell division protein [Lactobacillus vini DSM 20605]
Length = 260
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILG 91
VK A G + QAER R + +PE + +A + I F H LG++LG
Sbjct: 54 QVKFCANGLFQQAER-RRGLFYPEYFNPKQEDFQLALMEIKYPVKFAQLEHRQILGTLLG 112
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL-----EY 146
+G+ R IGDI+ G Q ++ + ++L +E++G + V I L E+
Sbjct: 113 SGLKRSAIGDILTDGIHW-QVIIEKPMVEFLKQEIERIGKIKVQLEEISFSQLLQSKIEW 171
Query: 147 EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 206
E SF +SLR+D L ++ SR++ L++ V +NW + + L+ D+
Sbjct: 172 EKA---SFSV--SSLRIDNLVASVCHFSRARCKQLLAAKKVHLNWMLIEQPDFDLKLQDV 226
Query: 207 VSVSGKGRIKIGEINS-TRKGKFAVELI 233
+SV G GR ++ + ++KG VE++
Sbjct: 227 ISVRGFGRFQLASLGQLSKKGHLRVEVL 254
>gi|205373286|ref|ZP_03226090.1| RNA-binding S4 domain-containing protein [Bacillus coahuilensis
m4-4]
Length = 257
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 5/220 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 71
+DFL P + + ++V +G P AER C + + + D D+ A L +
Sbjct: 34 TDFLHPRERQIVEAIIGSQSEVLVSFEGLLPDAERKRCLIYPDYFQPKIEDFDL-ALLEV 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H LG+++ GI REK GDI+L ++ Q + EL Y+ +VG
Sbjct: 93 EYPRKFITLEHRQILGALMSLGIRREKYGDILLSDDR-IQLIAANELKSYITLQFTEVGK 151
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
+ + ++T +SLR+D + S K+SR+K I+ V+VNW
Sbjct: 152 SQIELIEKNRKEIIQPNEEWSEYQTTVSSLRLDVMLSTLLKISRNKAQAYITTNKVKVNW 211
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
+ GD++SV GKGR+KI ++ T++ K+ V
Sbjct: 212 REEDRVSFICEPGDMISVRGKGRLKIFSLDGQTKREKWKV 251
>gi|374673974|dbj|BAL51865.1| hypothetical protein lilo_1869 [Lactococcus lactis subsp. lactis
IO-1]
Length = 230
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 5/173 (2%)
Query: 62 DPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELAD 120
D DI + L I F SH LG+ LG G+ R+++GDII+ K Q V L +
Sbjct: 53 DFDI-SLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNK-IQVFVSKHLVE 110
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
++EK+G +V I L +L E + + +LRVD + + FK+SR+ N
Sbjct: 111 SF-KAIEKIGRAAVKIQEISLESLVEETDKAVREVVLVDNLRVDKMIAVAFKISRNIATN 169
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
++ + V+VN+ + K ++ D++SV G GRIKI I N T+KGK VE+
Sbjct: 170 MLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKILRILNFTKKGKQRVEI 222
>gi|403069265|ref|ZP_10910597.1| hypothetical protein ONdio_06690 [Oceanobacillus sp. Ndiop]
Length = 258
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 4/220 (1%)
Query: 14 SDFLTPPVLK-ESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSI 71
+DFL P + M+ ++K GG AER R+ + E +T D + L
Sbjct: 34 TDFLDPREQQIVEMLIGTSQEELKIYKHGGGHGAERKRMVIAPFYEVVTQDSCQLTLLEA 93
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
+ F H D +G+ + G+ R+K+GDI G+ Q ++ E+A Y+I +L +
Sbjct: 94 SYQDKFITIEHRDVMGAFMSLGVHRKKLGDI-FAGDGTIQIILAEEIAAYVIANLTSIKK 152
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
+V L +++ + + +SLR+DA+ +KLSR I V+VN+
Sbjct: 153 ANVIFEERDLSSMQIKKEQWIETDKTVSSLRLDAVLKEIYKLSRKDAAAYIQKLQVKVNY 212
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
V N L+ GD++S+ GKGR K+ I ++K K+ +
Sbjct: 213 RVVDDNKFHLQEGDLISLRGKGRSKLMAIKGVSKKDKWKI 252
>gi|421452185|ref|ZP_15901546.1| RNA binding protein [Streptococcus salivarius K12]
gi|400182616|gb|EJO16878.1| RNA binding protein [Streptococcus salivarius K12]
Length = 267
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 16/228 (7%)
Query: 14 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAA 68
+DFL P + +E+LA ++K E R+ + P+ L D +
Sbjct: 38 TDFLNP----REIQIVEELAHYYNLKFFVSSTLESEEYGRVILA-PDYYELEEDDFEIKR 92
Query: 69 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I+ F +H LG+++ G+ R+ GDIIL E QF + LA Y I ++
Sbjct: 93 LEISYARQFNKLTHPKVLGALINQLGLDRQVFGDIILDEEGRVQFYIASHLASYAIMTIT 152
Query: 128 KVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
K+GNVSV+ + + + +K+F + +S+R+D + S LSRS + LI++G
Sbjct: 153 KIGNVSVTLKEVSKDDWISNQEKYSKTF-VLLSSMRLDNVLSTVLNLSRSNALKLIASGK 211
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
V++N+ V K + GD++S+ G GR ++ + + + K K +E
Sbjct: 212 VKLNYRQVEKADQAVIIGDMISIRGYGRFRLAQQDGFSKSGKAKIVIE 259
>gi|169827025|ref|YP_001697183.1| hypothetical protein Bsph_1449 [Lysinibacillus sphaericus C3-41]
gi|168991513|gb|ACA39053.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 262
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
G + +AER R+ + ++ D + A ++ F H D LG++L G+ R K
Sbjct: 62 GLFNEAERQRMLIYPAYYEPTEKDFQLTAFTLQYPVKFVQLRHPDVLGALLSLGLNRSKF 121
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI----PLLALEYEPPRTKSFK 155
GDI + + QF+V E+A+Y+ L +G V V + PLL E E +S+
Sbjct: 122 GDIRV-NDHQIQFVVAQEVAEYVRLHLTGIGKVKVHVESLKEQEPLLINE-EEWLEESYT 179
Query: 156 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215
S+R+D + + K+SR K LI+ VRVNWT L+ GDI+S+ G GR+
Sbjct: 180 V--TSMRLDVIIATVLKVSRQKAQALITGKKVRVNWTERDAVAFELQEGDILSIRGSGRM 237
Query: 216 KI 217
KI
Sbjct: 238 KI 239
>gi|347522217|ref|YP_004779788.1| hypothetical protein LCGT_1611 [Lactococcus garvieae ATCC 49156]
gi|385833602|ref|YP_005871377.1| hypothetical protein [Lactococcus garvieae Lg2]
gi|343180785|dbj|BAK59124.1| conserved hypothetical protein [Lactococcus garvieae ATCC 49156]
gi|343182755|dbj|BAK61093.1| conserved hypothetical protein [Lactococcus garvieae Lg2]
Length = 265
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 9/233 (3%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 63
R + V+ + FL P + E + +L +++ + Q E ++ + PE D
Sbjct: 27 RVENNYSVVTTYFLNPREV-EILESLANKRELQIFSTQDIAQTELTKIIIA-PEFYQLDI 84
Query: 64 -DI-VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELAD 120
D +A L I+ F H LGS LG TGI R +IGDIIL E Q V L +
Sbjct: 85 LDFDLALLEISYAQKFYQLKHSQILGSFLGQTGIRRSEIGDIIL-NEGRVQVFVSKHLLE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
++ K+G+ +V P LE E + + +SLR+D + ++ F++SR+ V
Sbjct: 144 IFQNNIRKIGSATVKFVEKPFEERLETETSSVRKVVLV-SSLRIDKIIASTFEISRNLAV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVE 231
N++ V++N+ + K + GD++SV G GRIKI + + T+KGK +E
Sbjct: 203 NMLQLRKVKLNYLEIEKKDFPVEPGDLISVRGLGRIKILKMLGETKKGKQKIE 255
>gi|422871407|ref|ZP_16917900.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1087]
gi|328945575|gb|EGG39726.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1087]
Length = 261
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 97/208 (46%), Gaps = 6/208 (2%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 89
K DV+ A GY +E R+ V L D ++ L I+ F SH +G++
Sbjct: 52 KQYDVQVFASSGYYPSELARVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTL 111
Query: 90 LGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 148
L GI R GDI++ G++ AQ V LA Y I + KV + V + E
Sbjct: 112 LNQLGIERRTFGDILVVGDR-AQLFVDKRLAQYFIDHVTKVAKMPVRLKEVSFAEQLKEQ 170
Query: 149 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVS 208
+ + + + +SLR+D L ++ FKLSRS+ LIS V++N+ + D++S
Sbjct: 171 KQAVTREILASSLRLDKLVASTFKLSRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLIS 230
Query: 209 VSGKGRIKIGEINSTRKG---KFAVELI 233
V GR K+ N K K VEL+
Sbjct: 231 VRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|226324966|ref|ZP_03800484.1| hypothetical protein COPCOM_02758 [Coprococcus comes ATCC 27758]
gi|225206314|gb|EEG88668.1| S4 domain protein [Coprococcus comes ATCC 27758]
Length = 258
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 123/248 (49%), Gaps = 16/248 (6%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
++ A R +++SDFL L + V GGY +ER +++ P+A
Sbjct: 15 LSNNAYQRGIIMYSDFLNLNELNILHTTPKDSFPVPYRTFGGYDPSER-QMAAFLPDAFY 73
Query: 61 SDPD-----------IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKG 109
D I+ + F + SH D+LG++L GI R K GDI++ +K
Sbjct: 74 MYMDEESIRSTYPIRILKISPLQPKFA-EELSHRDYLGALLNLGITRAKTGDILIH-DKE 131
Query: 110 AQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA 169
A V EL ++L+ L +V + +V + ++EP + + K AS+R+D+L S
Sbjct: 132 AYVFVHQELTEFLVKELTRVRHTTVRAVEVENADFKWEP-KYEEIKGTVASVRLDSLLSL 190
Query: 170 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKF 228
F SRSKL LI G V VN +T NG ++ DI+SV GR + G ++ T+KG++
Sbjct: 191 AFSSSRSKLTALIEAGRVYVNGKLITSNGYHVKDNDIISVRQMGRFQYEGVLSETKKGRY 250
Query: 229 AVELIQYL 236
V + +Y+
Sbjct: 251 YVTIRKYI 258
>gi|347542604|ref|YP_004857241.1| S4 domain-containing protein [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985640|dbj|BAK81315.1| S4 domain protein [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 258
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 100/202 (49%), Gaps = 17/202 (8%)
Query: 34 DVKAVAQGGYPQAERCRL--SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
++ + G AERC + S+G + D D+ L I+ N F SH DFLGSI+
Sbjct: 57 ELNVLCYGFVDDAERCLIAFSIGEIDLSIFD-DVAKVLKISYNDKFNKLSHRDFLGSIMS 115
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG----NVSVSC-TRIPLLALEY 146
G +REK+GD++++ VV + DY+I +L KV NV+V R+P
Sbjct: 116 LGFSREKMGDLVIENN-SVYVPVVIDFVDYIIQNLIKVKHSPVNVAVELFNRLP------ 168
Query: 147 EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 206
R + + +SLR+D + S+ +SR K L+ G +++N + + DI
Sbjct: 169 -QKRFEILYKVVSSLRIDNIISSLTNVSREKSKLLVKEGKIKINGIIESNPDKKICENDI 227
Query: 207 VSVSGKGRIKIGEI-NSTRKGK 227
+ V+G G+ K EI ST K K
Sbjct: 228 IVVTGFGKFKFKEILGSTSKNK 249
>gi|424780486|ref|ZP_18207359.1| hypothetical protein C683_0666 [Catellicoccus marimammalium
M35/04/3]
gi|422842888|gb|EKU27335.1| hypothetical protein C683_0666 [Catellicoccus marimammalium
M35/04/3]
Length = 261
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 19/225 (8%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQ---AERCRLSVGHPEALTSDPDIVAALSIT 72
FL P +E + +E LA + V+ Y Q +E+ R+ + +PE + + I
Sbjct: 39 FLNP---REQYL-VENLAHQRGVSVQAYSQFRHSEQKRVLL-YPEYFVPEEEDFETQLIE 93
Query: 73 GNFG--FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
++ F H + LG++LG GI RE+IGDI L +K Q V L YL ++ K+
Sbjct: 94 IHYAQKFVELHHREVLGTLLGQGIKREQIGDIHL-NDKQIQVEVSQNLTSYLCMNVTKMS 152
Query: 131 NVSVSCTRIPLLALEYE---PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
N SV R+ +A E R+K+ S R+D + + + +SR LI V
Sbjct: 153 NQSV---RLEPIAKEKRIDAEERSKTENATITSFRLDNIVATVYNISRQLSKKLIQAEKV 209
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI--NSTRKGKFAV 230
+VN+ TV K ++ D++SV G GR +I EI T+KG++ +
Sbjct: 210 KVNFMTVDKADFSVAEEDLISVRGYGRCQIKEIGKERTKKGRYRI 254
>gi|420143356|ref|ZP_14650857.1| Hypothetical protein Y7C_90763 [Lactococcus garvieae IPLA 31405]
gi|391856875|gb|EIT67411.1| Hypothetical protein Y7C_90763 [Lactococcus garvieae IPLA 31405]
Length = 265
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 9/233 (3%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 63
R + V+ + FL P + E + +L +++ + Q E ++ + PE D
Sbjct: 27 RVENNYSVVTTYFLNPREV-EILESLANKRELQIFSTQDIAQTELTKIIIA-PEFYQLDI 84
Query: 64 -DI-VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELAD 120
D +A L I+ F H LGS LG TGI R +IGDIIL E Q V L +
Sbjct: 85 LDFDLALLEISYAQKFYQLKHSQILGSFLGQTGIRRSEIGDIIL-NEGRVQVFVSKHLLE 143
Query: 121 YLITSLEKVGNVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
++ K+G+ +V P LE E + + +SLR+D + ++ F++SR+ V
Sbjct: 144 IFQNNIRKIGSATVKFVEKPFEERLETETSSVRKVVLV-SSLRIDKIIASTFEISRNLAV 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVE 231
N++ V++N+ + K + GD++SV G GRIKI + + T+KGK +E
Sbjct: 203 NMLQLRKVKLNYLEIEKKDFPVEPGDLISVRGLGRIKILKMLGETKKGKQKIE 255
>gi|322517030|ref|ZP_08069918.1| S4 domain-containing protein YlmH [Streptococcus vestibularis ATCC
49124]
gi|322124398|gb|EFX95898.1| S4 domain-containing protein YlmH [Streptococcus vestibularis ATCC
49124]
Length = 230
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 8/224 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 2 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 59
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F H LG+++ G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 60 SYARQFNKLIHPKILGALINQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 119
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
VSV+ + F + +S+R+D + + K+SRS + LI++G V++N
Sbjct: 120 KVSVTLREASKDDWISNQEKYSQFFVLLSSMRLDNVLATVLKISRSNALKLIASGKVKLN 179
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
+ + K T+ GD++SV G GR ++ + I+ + K K ++
Sbjct: 180 YRQIEKADQTISIGDMISVRGFGRFRLAQQEGISKSGKAKVVID 223
>gi|295091872|emb|CBK77979.1| Uncharacterized conserved protein, contains S4-like domain
[Clostridium cf. saccharolyticum K10]
Length = 251
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 19/233 (8%)
Query: 13 HSDFLTPPVLKESMM--ALEK-LADVKAVAQGGYPQAER---CRLSVGHPEALTSDPDIV 66
++DFL L E + ++E+ L V+ + GGY AER C L +A I+
Sbjct: 27 YTDFLN---LNEQTVFHSIERSLPPVRYLITGGYEPAERKIVCFLPSYEEDATNLPISIL 83
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
+ F + +H D+LG+++ GI R +GDI++ E G + +A+Y+ L
Sbjct: 84 KVEPVNARFA-EGLTHRDYLGALMNLGIERGMVGDIVIN-EDGCFIFCLERMAEYISGEL 141
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL---RVDALASAGFKLSRSKLVNLIS 183
+V SVSCT +P + E + F+ I S+ R+D + S + SR+K++ I
Sbjct: 142 RQVRRTSVSCTAVPAFSCRVE----QKFEEIRGSIASPRLDNVLSLVYHTSRTKILPYIQ 197
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVELIQY 235
V V+ L+ G+IVSV G G+ G N TRKG+ + +Y
Sbjct: 198 GEKVFVDGKLAVSPSMQLKGGEIVSVRGLGKFLFTGTENETRKGRIFAAVRRY 250
>gi|409386151|ref|ZP_11238616.1| hypothetical protein, contains S4-like RNA binding domain
[Lactococcus raffinolactis 4877]
gi|399206561|emb|CCK19531.1| hypothetical protein, contains S4-like RNA binding domain
[Lactococcus raffinolactis 4877]
Length = 265
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 6/224 (2%)
Query: 14 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 70
+DFL P + +++ + +D++ + E ++ + + D +A L
Sbjct: 36 TDFLNPRQVFILTTLVQGQHASDIQMFTSSAIAETEYVKVILAPTYYQLENADFELACLQ 95
Query: 71 ITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
I F H LG++LG TG+ R KIGDI++ + AQ V +LA + S+ K+
Sbjct: 96 IDFASKFVTLKHSQILGTLLGETGLERSKIGDIVVH-DTFAQVFVDAKLATLIADSIHKI 154
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
V I + + + +SLR+D + F +SR+ NLI + +V
Sbjct: 155 ARSGVRIREIDVTKFVSTTEQAVTKTVTLSSLRLDKAIATVFNMSRNLAQNLIQSNKAKV 214
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
N+ V +N L GD+VS+ G GR+KIG+I T+K K VE+
Sbjct: 215 NYAEVLRNDFELVAGDLVSIRGLGRLKIGQILGLTKKDKVRVEV 258
>gi|323691967|ref|ZP_08106216.1| hypothetical protein HMPREF9475_01079 [Clostridium symbiosum
WAL-14673]
gi|355628022|ref|ZP_09049551.1| hypothetical protein HMPREF1020_03630 [Clostridium sp. 7_3_54FAA]
gi|323503976|gb|EGB19789.1| hypothetical protein HMPREF9475_01079 [Clostridium symbiosum
WAL-14673]
gi|354819990|gb|EHF04421.1| hypothetical protein HMPREF1020_03630 [Clostridium sp. 7_3_54FAA]
Length = 251
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 12/230 (5%)
Query: 13 HSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGHPEALTSDPDIVA 67
++DFLT + SM L V + GGY AER C L E I+
Sbjct: 28 YTDFLTLNEQTIFHSMK--RTLPPVTWLMGGGYETAERKIVCFLPSYEDETADLPISILE 85
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
A+ + F + +H DFLG+I+ GI+R IGDI++ E G + ++A +LI L+
Sbjct: 86 AVPASPRFA-EALTHRDFLGAIMNLGISRSCIGDILMN-ENGCFIFCLEKMAPFLIQELK 143
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
V + VSC T S AS R+D++ S FK SRSK + I V
Sbjct: 144 MVRHTQVSCRPATQAPAAAPNCETVSGSV--ASPRLDSVISLVFKTSRSKTLPFIEGERV 201
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVELIQYL 236
++ G L+ G+I+SV G G+ + G N T+KG+ V +Y+
Sbjct: 202 FIDGRLCISPGRQLKEGEIISVRGLGKFRYTGAGNQTKKGRLFVNAEKYI 251
>gi|365135099|ref|ZP_09343624.1| hypothetical protein HMPREF1032_01420 [Subdoligranulum sp.
4_3_54A2FAA]
gi|363613069|gb|EHL64593.1| hypothetical protein HMPREF1032_01420 [Subdoligranulum sp.
4_3_54A2FAA]
Length = 254
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 98/200 (49%), Gaps = 12/200 (6%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 100
GGYP AER R+ E +P L + +H D+LG+++ GI RE IG
Sbjct: 62 GGYPDAER-RILRLFGEYGAQEPLPAVCLFAQTLRADRALTHRDYLGALMSLGIRRECIG 120
Query: 101 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI----PLLALEYEPPRTKSFKT 156
DI+L E GA V+ +A + L VG SV C R L E P +T +
Sbjct: 121 DILLS-EDGAYLFVLDTVAPLVCDELSSVGRCSV-CVRAGRAEELPGREERPAQTATV-- 176
Query: 157 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
ASLR+DA+ +A +SR V L+ +G V VN + + D+ S+ G+G+ K
Sbjct: 177 --ASLRLDAVLAAMLHISRGDAVQLVKSGMVEVNHVSTVSAHYEVFENDVFSIRGRGKYK 234
Query: 217 IGEINS-TRKGKFAVELIQY 235
+ + + +RKG+ V I+Y
Sbjct: 235 LCGVGAKSRKGRTFVSYIEY 254
>gi|385837519|ref|YP_005875149.1| hypothetical protein [Lactococcus lactis subsp. cremoris A76]
gi|358748747|gb|AEU39726.1| hypothetical protein llh_2750 [Lactococcus lactis subsp. cremoris
A76]
Length = 263
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 7/223 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
S F P E + L +V+ + Q E ++ + P D D +A L I
Sbjct: 36 STFFLNPREVEILKTLANKREVQVFSSAELAQTELVKIILA-PNFYVLDKDDFDIALLEI 94
Query: 72 TGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F SH LG+ LG G+ R+++GDII+ K Q V L + S++K+G
Sbjct: 95 SYAIKFVQISHAQVLGTFLGQAGVKRQELGDIIVTDSK-IQIFVSKHLVESF-KSIDKIG 152
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+V I L L + R + LR+D + + FK+SR+ N++ + V++N
Sbjct: 153 RAAVKIDEISLTDLAQDTERAIQEVVLLDGLRIDKMIAIAFKISRNIATNMLESKKVKIN 212
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVEL 232
+ + K ++ GD++SV G G IKI + T+KGK VE+
Sbjct: 213 YQEIDKKDFSVGAGDLISVRGFGCIKILSLLGLTKKGKQRVEI 255
>gi|116491157|ref|YP_810701.1| cell division protein [Oenococcus oeni PSU-1]
gi|419857930|ref|ZP_14380631.1| cell division protein [Oenococcus oeni AWRIB202]
gi|419858390|ref|ZP_14381063.1| cell division protein [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184041|ref|ZP_15641468.1| cell division protein [Oenococcus oeni AWRIB318]
gi|421190579|ref|ZP_15647877.1| cell division protein [Oenococcus oeni AWRIB422]
gi|421191513|ref|ZP_15648787.1| cell division protein [Oenococcus oeni AWRIB548]
gi|116091882|gb|ABJ57036.1| Cell division protein, S4-like domain [Oenococcus oeni PSU-1]
gi|399968275|gb|EJO02727.1| cell division protein [Oenococcus oeni AWRIB318]
gi|399969631|gb|EJO03961.1| cell division protein [Oenococcus oeni AWRIB422]
gi|399971631|gb|EJO05871.1| cell division protein [Oenococcus oeni AWRIB548]
gi|410497082|gb|EKP88560.1| cell division protein [Oenococcus oeni AWRIB202]
gi|410498826|gb|EKP90271.1| cell division protein [Oenococcus oeni DSM 20252 = AWRIB129]
Length = 256
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 7/203 (3%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGN 74
FL P K ++ L K GGY +AE R +G H E +D I + L +
Sbjct: 38 FLNPQEQK-ILLELAKQIGFSVRFGGGYQRAENKRALIGDHKE---NDFQI-SLLQLNYA 92
Query: 75 FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV 134
+ H LGS+L GI+ ++IGD+I + + Q L+ LAD+++ ++++ + +
Sbjct: 93 SHYVHLHHSTVLGSLLHHGISYDRIGDVIHEND-NWQLLIDSSLADFVVENVKRAASKKI 151
Query: 135 SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTV 194
+ +IP + K + + +S R+D L S + SR+ +LI G V VNW
Sbjct: 152 TFEKIPFEKILNPQSDEKEKEIVISSQRIDLLISQIYNFSRAHAKDLIETGQVMVNWFEK 211
Query: 195 TKNGTTLRTGDIVSVSGKGRIKI 217
+ GD+VS G GRI++
Sbjct: 212 DNTSYLAKLGDVVSTHGYGRIRL 234
>gi|283797929|ref|ZP_06347082.1| putative S4 domain protein [Clostridium sp. M62/1]
gi|291074397|gb|EFE11761.1| S4 domain protein [Clostridium sp. M62/1]
Length = 251
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 19/233 (8%)
Query: 13 HSDFLTPPVLKESMM--ALEK-LADVKAVAQGGYPQAER---CRLSVGHPEALTSDPDIV 66
++DFL L E + ++E+ L V+ + GGY AER C L +A I+
Sbjct: 27 YTDFLN---LNEQTVFHSIERSLPPVRYLMTGGYEPAERKIVCFLPSYEEDATNLPISIL 83
Query: 67 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
+ F + +H D+LG+++ GI R +GDI++ E G + +A+Y+ L
Sbjct: 84 KVEPVNARFA-EGLTHRDYLGALMNLGIERGMVGDIVIN-EDGCFIFCLERMAEYISGEL 141
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASL---RVDALASAGFKLSRSKLVNLIS 183
+V SVSCT +P + E + F+ I S+ R+D + S + SR K++ I
Sbjct: 142 RQVRRTSVSCTAVPAFSCRVE----QKFEEIRGSIASPRLDNVLSLVYHTSRPKILPYIQ 197
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVELIQY 235
V V+ L+ G+IVSV G G+ G N TRKG+ + +Y
Sbjct: 198 GEKVFVDGKLAVSPSMQLKGGEIVSVRGLGKFLFTGTENETRKGRIFAAVRRY 250
>gi|407796627|ref|ZP_11143580.1| hypothetical protein MJ3_06973 [Salimicrobium sp. MJ3]
gi|407019143|gb|EKE31862.1| hypothetical protein MJ3_06973 [Salimicrobium sp. MJ3]
Length = 255
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 7/220 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVK-AVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSI 71
+DFL P +E +A L + V G ER R+ + L + D + L
Sbjct: 34 TDFLNP---RERQIATSLLRNTDLQVEFSGEDDEERRRMIIAPEYELIEEEDFQLTLLEA 90
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
+ F H D LG+ + GI REK+GD+I++ + + E++D++ L+++
Sbjct: 91 SYPAKFVSLEHRDVLGAFMSLGIKREKLGDLIVK-DGFIHIIAAAEISDFIKMQLQQINK 149
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
SV I + + K +SLR+D + + + R K V I G V+VN+
Sbjct: 150 ASVRWKEIEMGSRMTSEEEWKESSATVSSLRIDVVLKEIYNMPRKKSVMYIKGGQVKVNF 209
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
TV L GD++S+ GKGR ++ E+ T+K K+ +
Sbjct: 210 RTVDDPSFLLEEGDLISLRGKGRSELTEVMGQTKKDKWRI 249
>gi|418576429|ref|ZP_13140575.1| hypothetical protein SSME_16310 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325491|gb|EHY92623.1| hypothetical protein SSME_16310 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 259
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 7/202 (3%)
Query: 32 LADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSI 89
D++ GG P AER R + P D + + I ++ F H LG+I
Sbjct: 55 FEDLEVTFYGG-PFAERKRAMIA-PSYFQPDAEAFEIVLIEIDYPQKFVTLQHQHILGTI 112
Query: 90 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 149
+ GI R+++GDI++ + QF + +L Y+I L K+ SV IP+ +
Sbjct: 113 MSLGIERDQLGDIVV--DDRIQFTLTKQLESYIILELTKIKGASVKLNSIPIKDMIQSKE 170
Query: 150 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 209
+SF+T + LR+D + + SRS LI V+VN T + L +GD++S+
Sbjct: 171 HWQSFETTVSGLRLDVVLKEMVRKSRSIAKQLIDKKRVKVNHTVIDAADFQLDSGDLLSI 230
Query: 210 SGKGRIKIGEI-NSTRKGKFAV 230
G GR I +I T+K K +
Sbjct: 231 QGFGRAMITDIGGKTKKDKIRI 252
>gi|302672285|ref|YP_003832245.1| RNA-binding S4 domain-containing protein [Butyrivibrio
proteoclasticus B316]
gi|302396758|gb|ADL35663.1| RNA-binding S4 domain-containing protein [Butyrivibrio
proteoclasticus B316]
Length = 271
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 119/257 (46%), Gaps = 36/257 (14%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLAD------------VKAVAQGGYPQAER 48
+A RA V H+DFL+ + E M + LA V GG AER
Sbjct: 18 LANRAYLNGFVTHTDFLS---VSEIAMFYQILASEGVPGNVHEYCGASYVVYGGAEDAER 74
Query: 49 ---CRLSVGHPEALT---------SDPDIVAALSIT--GNFGFQPCSHGDFLGSILGTGI 94
C L P+ L +D ++ + I N +H D+LGSI+ GI
Sbjct: 75 AMVCFL----PDYLDEETFLVSEKADNTVLKCVHIKPLNNKFADDLNHRDYLGSIMNLGI 130
Query: 95 AREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSF 154
R++IGDI L G+K A P++A + L ++ + SV C + + EP +
Sbjct: 131 ERDQIGDI-LAGDKEAYIFATPDIAQMMEKELIRIRHTSVRCGIVNAADCDIEPKFEEIS 189
Query: 155 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 214
++ AS R+DA+ + + LSRS+ LI + V ++ T G L+ G VSV G G+
Sbjct: 190 GSV-ASERIDAILAFVYHLSRSEAQKLIESESVFIDGRTAYSGGYDLKEGARVSVRGHGK 248
Query: 215 -IKIGEINSTRKGKFAV 230
I +G N+TRKG+ +
Sbjct: 249 FIYLGTSNTTRKGRLFI 265
>gi|238916862|ref|YP_002930379.1| hypothetical protein EUBELI_00931 [Eubacterium eligens ATCC 27750]
gi|238872222|gb|ACR71932.1| Hypothetical protein EUBELI_00931 [Eubacterium eligens ATCC 27750]
Length = 251
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 117/241 (48%), Gaps = 10/241 (4%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEK--LADVKAVAQGGYPQAERCRLSVGHPEAL 59
A R+ + +++FL + ++S+ A K L V GG ER + G E L
Sbjct: 15 ANRSFRQNIYTYTNFL--DINEQSVFAQMKNPLNFVAFKTYGGNDACERQMIQFGSFETL 72
Query: 60 TSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 116
+ P + +S + SH D+LG+++ GI RE +GDI ++G K A V
Sbjct: 73 GYEEEFPITLIKISPLIEKYAESLSHRDYLGALMNLGIKREMLGDINIKG-KDAYLYCVS 131
Query: 117 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 176
+AD++I +L V + + CT+ + +E P + + + AS R+DA ++ KLSRS
Sbjct: 132 HIADFIIDNLSTVKHTHIQCTKTDINDIEC-SPELEDIEVLSASERIDAAVASLTKLSRS 190
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGKFAVELIQY 235
+ V L + +N + N L+ DI+ + G G+ I G T+KG+ + +Y
Sbjct: 191 QAVELFRARKIFINSRQMENNSYQLKANDILVIRGTGKFIYQGCGRETKKGRVYLSFKKY 250
Query: 236 L 236
+
Sbjct: 251 V 251
>gi|339441072|ref|YP_004707077.1| hypothetical protein CXIVA_00080 [Clostridium sp. SY8519]
gi|338900473|dbj|BAK45975.1| hypothetical protein CXIVA_00080 [Clostridium sp. SY8519]
Length = 252
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 111/244 (45%), Gaps = 14/244 (5%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A R+ + +DFLT E + ++LA V GG ER L G L
Sbjct: 15 LADRSCRENRYVFTDFLTLEEQSEVLNMKQELAYVDFALYGGTEACERKMLRFGSEAQLG 74
Query: 61 SDPDI-VAALSI---TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 116
+ + L I F P H DFLG+++ GI R+ +GDI ++ EK A
Sbjct: 75 YSVEFPICCLRIEPRMKKFA-DPLIHRDFLGALMHLGIRRDVLGDIFVR-EKCAWLFCEE 132
Query: 117 ELADYLITSLEKVGNVSVSC---TRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKL 173
+++ ++ +L KV + V C IP E P + + I AS R D L + +L
Sbjct: 133 QMSSFIRDNLIKVRHTYVQCRESAEIP----EEAAPVLQPQELIVASTRADVLVAKICRL 188
Query: 174 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGKFAVEL 232
SRS+ V L + +N N L+ GD++S+ G G+ I GE TRKG + +
Sbjct: 189 SRSQSVELFREKKIFINGYLYENNSGMLKPGDVISIRGFGKLIYDGEKAVTRKGSHRIAV 248
Query: 233 IQYL 236
+Y+
Sbjct: 249 RRYI 252
>gi|386344430|ref|YP_006040594.1| hypothetical protein STH8232_0932 [Streptococcus thermophilus JIM
8232]
gi|339277891|emb|CCC19639.1| hypothetical protein STH8232_0932 [Streptococcus thermophilus JIM
8232]
Length = 266
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 113/225 (50%), Gaps = 10/225 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 38 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 95
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F +H LG++L G+ R+ GD+IL E QF + LA Y I ++ K+G
Sbjct: 96 SYARQFNKLTHPKILGALLNQLGLERQVFGDVILDEEGRVQFNIASHLASYAIMTITKIG 155
Query: 131 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
VSV+ + + + ++SF + +S+R+D + S K RS + LI++G +++
Sbjct: 156 RVSVTLREVSKDDWISNQEKYSQSF-VLLSSMRLDNVLSTVLKTPRSNALKLIASGKIKL 214
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
N+ + K+ + GD++SV G GR ++G+ I+ + K K ++
Sbjct: 215 NYRQIEKSDQIISIGDMISVRGFGRFRLGQQEGISKSGKAKVVID 259
>gi|73662889|ref|YP_301670.1| hypothetical protein SSP1580 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495404|dbj|BAE18725.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 212
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 7/202 (3%)
Query: 32 LADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSI 89
D++ GG P AER R + P D + + I ++ F H LG+I
Sbjct: 8 FEDLEVTFYGG-PFAERKRAMIA-PSYFQPDAEAFEIVLIEIDYPQKFVTLQHQHILGTI 65
Query: 90 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 149
+ GI R+++GDI++ + QF + +L Y+I L K+ SV IP+ +
Sbjct: 66 MSLGIERDQLGDIVV--DDRIQFTLTKQLESYIILELTKIKGASVKLNSIPIKDMIQSKE 123
Query: 150 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 209
+SF+T + LR+D + + SRS LI V+VN T + L +GD++S+
Sbjct: 124 HWQSFETTVSGLRLDVVLKEMVRKSRSIAKQLIDKKRVKVNHTVIDAADFQLDSGDLLSI 183
Query: 210 SGKGRIKIGEI-NSTRKGKFAV 230
G GR I +I T+K K +
Sbjct: 184 QGFGRAMITDIGGKTKKDKIRI 205
>gi|212639640|ref|YP_002316160.1| hypothetical protein Aflv_1814 [Anoxybacillus flavithermus WK1]
gi|212561120|gb|ACJ34175.1| Uncharacterized conserved protein, contains S4-like domain
[Anoxybacillus flavithermus WK1]
Length = 257
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 15/225 (6%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--IVAALSI 71
+ FLTP + + +V GG ER R ++ +P + + + ++ S+
Sbjct: 34 THFLTPREQQIVRSIVGHHDEVHVAFFGGSSSVERKR-ALLYPTYMQPNEEDFQLSLFSV 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H D LG++L G+ REK GDI++ + QF+V E+A ++ ++ +G
Sbjct: 93 RYPKKFVTLGHRDVLGALLSLGVKREKFGDIVIVDD-IIQFVVAKEIAPFVKMNVTTIGK 151
Query: 132 VSVSCTRIPLLAL-----EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
VS PL L E+E ++F +SLR+DA+ + F++SR K I+
Sbjct: 152 AKVSLEEQPLSQLLDVKEEWEE---ETFTV--SSLRLDAILAQCFRISRQKSQAFIAQNF 206
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
V+VNW TV + + GD++S+ G GR ++ I T+K K+ +
Sbjct: 207 VKVNWKTVDQAHMECQEGDLLSLRGYGRCRLQAIVGQTKKEKWRI 251
>gi|170016893|ref|YP_001727812.1| cell division protein [Leuconostoc citreum KM20]
gi|414597042|ref|ZP_11446613.1| S4 domain protein [Leuconostoc citreum LBAE E16]
gi|421878259|ref|ZP_16309741.1| S4 domain protein [Leuconostoc citreum LBAE C11]
gi|169803750|gb|ACA82368.1| Cell division protein [Leuconostoc citreum KM20]
gi|390447873|emb|CCF25861.1| S4 domain protein [Leuconostoc citreum LBAE C11]
gi|390482156|emb|CCF28674.1| S4 domain protein [Leuconostoc citreum LBAE E16]
Length = 263
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 6/217 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
R++ + + FL P + ++ D+K V GG AE R ++ P + +
Sbjct: 28 RQSQDEYRFILTYFLNPREQYILKTLVNRMNDLKVVFNGGVDGAESQR-AIISPNFYSPE 86
Query: 63 PDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
D +A I F H LG+++ +GI R IGDI L + Q +V ++
Sbjct: 87 LDDFELAVFEIKYPKKFTTLHHSTILGTLMHSGIKRAIIGDI-LNDAQQWQIIVDKKMLA 145
Query: 121 YLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ ++ VG VS L A++ + ++F + ASLR+D + + F L RS
Sbjct: 146 YIQQTVLTVGRTKVSLVATTLNHAIQPKDDWEETF-VLLASLRIDTVIATIFDLPRSVTK 204
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
+L+ VR+NW TV K TT+ GD++SV G GRI+
Sbjct: 205 SLVEQQQVRLNWHTVIKPDTTVTVGDVISVRGYGRIQ 241
>gi|452995419|emb|CCQ92906.1| putative RNA-binding protein ylmH [Clostridium ultunense Esp]
Length = 261
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 99/220 (45%), Gaps = 12/220 (5%)
Query: 14 SDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVA 67
+DFL P M L LA + GGY AER R L + +
Sbjct: 36 TDFLDP----RQMEILRNLAMHRGGIALFENGGYEGAERKRTLLLPEGENPPEEEEFHIG 91
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I F H D+LG++L GI REK GD+ E+GA ++ E+ADY+ L
Sbjct: 92 FLHIRPRGRFYSLEHRDYLGALLHVGIKREKFGDL-WTVEEGAMLVLAEEMADYVSLQLT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
+VG V V R E + + + +S+R+DA+ + LSR+K I G V
Sbjct: 151 EVGRVPVVVERKEKGEWELPTVKLEERRITTSSMRLDAVLAEMLPLSRAKTSEWIKGGKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKG 226
+ N K ++ GD++SV GR + E+ T+KG
Sbjct: 211 KRNHRVAVKPDEEVKVGDLLSVREYGRFYLLEEMGRTKKG 250
>gi|422821713|ref|ZP_16869906.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK353]
gi|324990664|gb|EGC22600.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK353]
Length = 261
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 97/209 (46%), Gaps = 8/209 (3%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGS 88
K DV+ A Y +E R+ V P L D ++ L I+ F SH +G+
Sbjct: 52 KQYDVQVFASSDYFPSELARVLVA-PSYYQLNMDDFELSLLEISYASKFYKISHSQIMGT 110
Query: 89 ILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 147
+L GI R GDI++ GE+ AQ V LA Y I + K+ + V + E
Sbjct: 111 LLNQLGIERRTFGDILVVGER-AQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKE 169
Query: 148 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 207
+ + + + +SLR+D L ++ FKLSRS+ LIS V++N+ + D++
Sbjct: 170 QKQAVTREILASSLRLDKLVASTFKLSRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLI 229
Query: 208 SVSGKGRIKIGEINSTRKG---KFAVELI 233
SV GR K+ N K K VEL+
Sbjct: 230 SVRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|118587342|ref|ZP_01544768.1| hypothetical protein OENOO_64015 [Oenococcus oeni ATCC BAA-1163]
gi|421187177|ref|ZP_15644553.1| cell division protein [Oenococcus oeni AWRIB418]
gi|118432166|gb|EAV38906.1| hypothetical protein OENOO_64015 [Oenococcus oeni ATCC BAA-1163]
gi|399964004|gb|EJN98659.1| cell division protein [Oenococcus oeni AWRIB418]
Length = 256
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 7/203 (3%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGN 74
FL P K ++ L K GGY +AE R +G H E +D I + L +
Sbjct: 38 FLNPQEQK-ILLELSKQTGFSVRFDGGYQKAENKRALIGDHKE---NDFQI-SLLQLNYA 92
Query: 75 FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV 134
+ H LGS+L GI+ ++IGD+I + + Q L+ LAD+++ ++++ + +
Sbjct: 93 SHYVHLHHSTVLGSLLHHGISYDRIGDVIHEND-NWQLLIDSSLADFVVENVKRAASKKI 151
Query: 135 SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTV 194
+ +I + K + + +S R+D L S + SR+ +LI +G V VNW
Sbjct: 152 TFEKISFEKILNPQSDEKEKEIVISSQRIDLLISQIYNFSRAHAKDLIESGQVMVNWFEK 211
Query: 195 TKNGTTLRTGDIVSVSGKGRIKI 217
+ GD+VS G GRI++
Sbjct: 212 DNTSYLAKLGDVVSTHGYGRIRL 234
>gi|451343653|ref|ZP_21912724.1| hypothetical protein HMPREF9943_00949 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449337750|gb|EMD16907.1| hypothetical protein HMPREF9943_00949 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 247
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 7/193 (3%)
Query: 41 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
GG+ AE R+ + H + D ++ L N F H D LG+++ GI RE I
Sbjct: 55 GGFINAENKRMLICHDYYEIVPDDFHISVLKADYNDSFGKLKHSDVLGALMNLGIKREVI 114
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDI E F + E DY+ T L K+ SV + L + + F +
Sbjct: 115 GDIC---ESPLSFAICDENCDYIKTHLRKIKKSSVHFGEVNELIEIRNEFKNQVFYV--S 169
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
SLR+D L S+ F++SR K I++G+V+ N+ ++ + DI+S+ GR+KI
Sbjct: 170 SLRLDKLISSLFRISRIKANEAINSGNVKKNYQIISNASDVCKDADILSLRHYGRVKIHV 229
Query: 220 INS-TRKGKFAVE 231
+ TR G +E
Sbjct: 230 TDKVTRSGNILIE 242
>gi|417004699|ref|ZP_11943338.1| hypothetical protein FSLSAGS3026_02848 [Streptococcus agalactiae
FSL S3-026]
gi|341577681|gb|EGS28088.1| hypothetical protein FSLSAGS3026_02848 [Streptococcus agalactiae
FSL S3-026]
Length = 179
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 3/169 (1%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
++ + I N F +H +G++L G+ R +GDI+++ E AQ LV ++ ++L+
Sbjct: 6 LSLIEIKYNAKFNHLTHAKIMGTLLNYLGVKRSILGDILVE-EGCAQVLVDSQMTNHLVH 64
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
S+ K+G SV +PL L + I +SLR+D + + K+SR++ LI
Sbjct: 65 SVTKIGTASVQLAEVPLSKLLTPKQDIQKLTVIASSLRLDKILATILKISRTQSTKLIEA 124
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 232
V+VN+ V + L GD++SV G GR + + T+ K+ +E+
Sbjct: 125 DKVKVNYAIVNRVSEQLVEGDLISVRGYGRFTLNHNLGLTKNQKYKLEV 173
>gi|227877329|ref|ZP_03995402.1| ribosomal protein S4e [Lactobacillus crispatus JV-V01]
gi|256848735|ref|ZP_05554169.1| cell-division protein [Lactobacillus crispatus MV-1A-US]
gi|227863185|gb|EEJ70631.1| ribosomal protein S4e [Lactobacillus crispatus JV-V01]
gi|256714274|gb|EEU29261.1| cell-division protein [Lactobacillus crispatus MV-1A-US]
Length = 266
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 9/229 (3%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 65
+ E + +DFL P K +++ D GGYP AE+ R+ + E L P
Sbjct: 34 KHEPILTDFLDPG--KRAILRTIVGNDAFVQEYGGYPNAEKKRVYLSE-EWLNLRPSDYQ 90
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ I F ++ LG++ +GI GDII + QF E+ ++
Sbjct: 91 IQPYEIEYPQKFTKINYSVILGTLANSGIDTSIFGDIINDNQGKWQFFTKKEITEFFEEQ 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKT--IEASLRVDALASAGFKLSRSKLVNLIS 183
++++G V P+ E P S + I AS+R+DA+ S + SR ++ +I+
Sbjct: 151 IDRIGRAKVKLR--PISFKEVLVPEDDSIEKTKIVASMRIDAVLSGISRQSRGQIQKMIN 208
Query: 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVEL 232
+ V++NW + + ++ D++S+ GRI I ++++TRKGK+ V L
Sbjct: 209 SQLVKLNWHEIADSNIMIKEDDVLSLRHFGRILIEDVSTTRKGKYKVVL 257
>gi|125717514|ref|YP_001034647.1| hypothetical protein SSA_0659 [Streptococcus sanguinis SK36]
gi|422853762|ref|ZP_16900426.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK160]
gi|422856015|ref|ZP_16902673.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1]
gi|422865984|ref|ZP_16912609.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1058]
gi|125497431|gb|ABN44097.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
gi|325697073|gb|EGD38960.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK160]
gi|327461676|gb|EGF08007.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1]
gi|327489529|gb|EGF21322.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1058]
Length = 261
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 12/228 (5%)
Query: 16 FLTPPVLKESMMALEK----LADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAAL 69
F T P L +++ K DV+ A Y +E R+ V P L D ++ L
Sbjct: 33 FETTPFLNPHQVSILKNIGKQYDVQVFASSDYFPSELARVLVA-PSYYQLNMDDFELSLL 91
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
I+ F SH +G++L GI R GDI++ G++ AQ V LA Y I + K
Sbjct: 92 EISYASKFYKISHSQIMGTLLNHLGIERRTFGDILVVGDR-AQLFVDKRLAQYFIDHVSK 150
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
+ + V + L E + + + + +SLR+D L ++ FKLSR++ LIS V+
Sbjct: 151 IAKMPVKLKEVSFAELLKEQKQAVTREILASSLRLDKLVASTFKLSRNQAAQLISGKHVK 210
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAVELI 233
+N+ + D++SV GR K+ N K K VEL+
Sbjct: 211 MNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|421876571|ref|ZP_16308127.1| S4 domain-containing protein YlmH [Leuconostoc citreum LBAE C10]
gi|372557648|emb|CCF24247.1| S4 domain-containing protein YlmH [Leuconostoc citreum LBAE C10]
Length = 263
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 6/217 (2%)
Query: 3 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 62
R++ + + FL P + ++ D+K V GG AE R ++ P + +
Sbjct: 28 RQSQDEYRFILTYFLNPREQYILKTLVNRVNDLKVVFNGGIDGAESQR-AIISPNFYSPE 86
Query: 63 PDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELAD 120
D +A I F H LG+++ +GI R IGDI L + Q +V ++
Sbjct: 87 LDDFELAVFEIKYPKKFTTLHHSTILGTLMHSGIKRAIIGDI-LNDAQQWQIIVDKKMLA 145
Query: 121 YLITSLEKVGNVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ ++ VG VS L A++ + ++F + ASLR+D + + F L RS
Sbjct: 146 YIQQTVLTVGRTKVSLVATTLNHAIQPKDDWEETF-VLLASLRIDTVIATIFDLPRSVTK 204
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
+L+ VR+NW TV K TT+ GD++SV G GRI+
Sbjct: 205 SLVEQQQVRLNWHTVIKPDTTVTVGDVISVRGYGRIQ 241
>gi|225378090|ref|ZP_03755311.1| hypothetical protein ROSEINA2194_03750 [Roseburia inulinivorans DSM
16841]
gi|225210091|gb|EEG92445.1| hypothetical protein ROSEINA2194_03750 [Roseburia inulinivorans DSM
16841]
Length = 249
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 10/240 (4%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
++R+A+ + VL SDFL L EK + K A GG P AER ++ P+AL
Sbjct: 14 LSRQANRKGIVLFSDFLNLNELNIYHQN-EKFFETKTEASGGVPFAER-QIVAFIPDALY 71
Query: 61 SDPDI-VAALSITGNF-GF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
+ +A L I ++ F + H D LGS++ G+ R K+GDI++ +K FL+ E
Sbjct: 72 YEWQFPIAYLEIVPSYPKFAEKLGHRDILGSMMNLGVDRSKLGDIVICEDK--YFLICEE 129
Query: 118 -LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRS 176
+A Y + +L+K+ + V + + AL + + + I S R+D++ + +K SRS
Sbjct: 130 SMAPYFMENLDKIRHTVVKLSPVSADALG-QQQKFEEKDGIITSNRLDSMIACVYKFSRS 188
Query: 177 KLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRKGKFAVELIQY 235
+ + V VN V + DI+SV G GR E+ T KG+ V Y
Sbjct: 189 QALEFFKAEKVFVNGKCVQNPSYRCKEADIISVRGYGRFVFEREMGETNKGRMKVRYKLY 248
>gi|160894535|ref|ZP_02075311.1| hypothetical protein CLOL250_02087 [Clostridium sp. L2-50]
gi|156863846|gb|EDO57277.1| S4 domain protein [Clostridium sp. L2-50]
Length = 259
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 110/247 (44%), Gaps = 12/247 (4%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A +A + ++FL+ L L ++ + GG +R + G +
Sbjct: 14 LANKAYQKNIYTFTNFLSASDLDIFYSMLPDISHIPYEIFGGRDGCDRVMIRFGSEDTTG 73
Query: 61 SD-PDIVAALSIT---GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQG------EKGA 110
D P + L IT F SH D LGS++ GI RE GDII++ A
Sbjct: 74 YDLPFPITILQITPLMDKFS-DELSHRDVLGSLMNLGIEREMTGDIIMKASSRSGIRNTA 132
Query: 111 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 170
V +ADY+ +L ++ + SV C P L + + I AS R+DA+ +A
Sbjct: 133 YVFCVSSIADYISENLTRIKHTSVRCIPCPDSDLPDITSTLEECQCIAASERIDAVIAAV 192
Query: 171 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGKFA 229
KLSRS+ V L V +N + N TL+ D S+ G G+ I G TRKG+
Sbjct: 193 TKLSRSQTVILFREKKVFLNNRVLENNSYTLKPDDTFSIRGYGKFIYKGCGKETRKGRIY 252
Query: 230 VELIQYL 236
+ L +Y+
Sbjct: 253 ITLERYV 259
>gi|160933114|ref|ZP_02080503.1| hypothetical protein CLOLEP_01957 [Clostridium leptum DSM 753]
gi|156868188|gb|EDO61560.1| hypothetical protein CLOLEP_01957 [Clostridium leptum DSM 753]
Length = 257
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 11/200 (5%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPC-SHGDFLGSILGTGIAREKI 99
GGY A+R R+ P+ L D + +SI +F + SH DFLG+++G GI RE +
Sbjct: 63 GGYEDAQR-RMFAAFPKELLPDSERFPVISIYLSFRKEDSLSHRDFLGALMGLGIKREAL 121
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE- 158
GDI++ GE E+A+++ T L KVG V + A + P + F+ +
Sbjct: 122 GDILV-GEGRCVLFCKEEIANFVETQLTKVGRTGVKL----MPAGSFPLPEGQRFEELSF 176
Query: 159 --ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
AS R+D + + SR K L S G V N+ L+ GD VS+ G G+
Sbjct: 177 TVASNRLDCAVACFVRSSREKSRQLFSQGLVTHNYEVEKSLSAVLQEGDKVSIQGYGKFI 236
Query: 217 IGEIN-STRKGKFAVELIQY 235
I +I T+KG+ + +Y
Sbjct: 237 IDQIGPETKKGRLKLAARKY 256
>gi|386714188|ref|YP_006180511.1| hypothetical protein HBHAL_2889 [Halobacillus halophilus DSM 2266]
gi|384073744|emb|CCG45237.1| conserved hypothetical protein [Halobacillus halophilus DSM 2266]
Length = 257
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 5/220 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
SDFL P + D GG QAER R + + + D + L +
Sbjct: 34 SDFLNPREQDIVKAVMGNHPDFNFGLSGGKDQAERKRAIIAPEYEIIEEEDYQLTMLEAS 93
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
F H D LG+ + GI REK+GD++++ + Q + E++DY+ + V
Sbjct: 94 YPAKFVTLEHPDVLGAFMSLGIRREKLGDLVVK-DGVIQIITDQEISDYIRMNFTGVKRA 152
Query: 133 SVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
+V+ PL LE E T+ +SLR+D L + +SR K I +G V+VN+
Sbjct: 153 TVNFEEKPLSQMLESEETWVMKNTTV-SSLRLDVLVKEIYGMSRKKAGMHIDSGHVKVNF 211
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
V L+ GD++S+ G+GR K+ EI T+K K+ V
Sbjct: 212 RVVENGAFQLQEGDLISLRGQGRSKLEEIQGLTKKEKYKV 251
>gi|229918558|ref|YP_002887204.1| RNA-binding S4 domain-containing protein [Exiguobacterium sp. AT1b]
gi|229469987|gb|ACQ71759.1| RNA-binding S4 domain protein [Exiguobacterium sp. AT1b]
Length = 256
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 20/228 (8%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVGHPEALTSDPDI--VAAL 69
+DFL P +++L + V GG+ AER RL + P+ +PD +
Sbjct: 34 TDFLDP----REQQIVKQLVGKQLVIHDDGGFEGAERRRLILA-PDYYELNPDDFEIEVR 88
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
I F +H G++L G+ R+K GD++L E+ QF E ++ +LE+V
Sbjct: 89 RIEYPTKFVDLTHRQVTGTLLNAGLKRQKFGDVVLD-EEIVQFATTREAVGFIEMNLERV 147
Query: 130 GNVSV---SCTRIPLLALEYEPPRTKSFKT--IEASLRVDALASAGFKLSRSKLVNLISN 184
G V S + +L + P+T+ + I +SLR D +AS +SR K L+ +
Sbjct: 148 GKAKVRISSVAKEEILVV----PKTEWVEGFGIVSSLRFDTVASEVLNISRQKAQALVKH 203
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 231
GD +VN + L D++SV G GRIK+ EI ST++ K ++
Sbjct: 204 GDCKVNHKVIEDASFILEPDDLLSVRGYGRIKLMEILGSTKREKIKIQ 251
>gi|404418421|ref|ZP_11000188.1| S4 domain-containing protein YlmH [Staphylococcus arlettae CVD059]
gi|403489014|gb|EJY94592.1| S4 domain-containing protein YlmH [Staphylococcus arlettae CVD059]
Length = 240
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 6/192 (3%)
Query: 42 GYPQAERCRLSVG--HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
G QAER R + + E D DIV + I F H LG+I+ GI RE++
Sbjct: 45 GGNQAERQRAIIAPTYFEPNADDFDIVL-IEIDYPQKFVTLQHQHILGTIMSLGIEREQL 103
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDII+ + QF++ +L Y+I L ++ +V IPL + + K F+T +
Sbjct: 104 GDIIV--NERIQFVLTKQLESYIILELTRIKGATVKLNTIPLTNMIQSNEQWKYFETTVS 161
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
LR+D + + SR+ LI V+VN T + + L D++S+ G GR + E
Sbjct: 162 GLRLDVVLKEMIRKSRTIAKQLIDKKRVKVNHTIIDASDFQLAQEDLLSIQGYGRAVVVE 221
Query: 220 I-NSTRKGKFAV 230
I T+KGK +
Sbjct: 222 IGGKTKKGKVRI 233
>gi|312863735|ref|ZP_07723973.1| S4 domain protein [Streptococcus vestibularis F0396]
gi|311101271|gb|EFQ59476.1| S4 domain protein [Streptococcus vestibularis F0396]
Length = 230
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 10/225 (4%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 71
+DFL P + + + L ++K + E R+ + P+ D D + L I
Sbjct: 2 TDFLNPREI-QIVKDLANYYNLKFFVSSTFDNEEYGRVILA-PDYYELDEDDFEIKRLEI 59
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ F H LG+++ G+ R+ GDIIL E QF + LA Y I S+ K+G
Sbjct: 60 SYARQFNKLIHPKILGALINQLGLERQVFGDIILDEEGRVQFNIASHLASYAIMSITKIG 119
Query: 131 NVSVSCTRIPLLA-LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
VSV+ + + ++SF + +S+R+D + + K+SRS + LI++G V++
Sbjct: 120 KVSVTLREASKDDWISNKEKYSQSF-VLLSSMRLDNVLATVLKISRSNALKLIASGKVKL 178
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
N+ + K T+ GD++SV G GR ++ + I+ + K K ++
Sbjct: 179 NYRQIEKADQTISIGDMISVRGFGRFRLAQQEGISKSGKAKVVID 223
>gi|336424183|ref|ZP_08604226.1| hypothetical protein HMPREF0994_00232 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336007851|gb|EGN37871.1| hypothetical protein HMPREF0994_00232 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 256
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 16/239 (6%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL- 59
+A ++ ++ + FL+ + A++K GG ER G PE L
Sbjct: 19 LAEKSYAQNIYTFTGFLSMAEQEALFEAMQKNKSYTFSLSGGGEGCERQMARFGSPEELG 78
Query: 60 TSDPDIVAALSIT-------GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF 112
+P V L I+ NF +H DFLG+++ GI R +GD L+G K A
Sbjct: 79 YEEPFPVEVLKISPLLEKFADNF-----THRDFLGAVMNLGIDRSTVGDFFLEG-KSAWL 132
Query: 113 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 172
+A Y+ +L KV + +V C I +E + I +S R DA+ + ++
Sbjct: 133 YCTQRIAPYICENLNKVRHTNVRC-EIVEQGMELPVREPEKISLIVSSERADAVLAKLWQ 191
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGKFAV 230
LSR++ + L V VN N L++GD VS G GR + G + TRKG+ V
Sbjct: 192 LSRNQSLELFRTKKVYVNGRLCENNSCQLKSGDRVSTRGYGRFLYYGALGETRKGRLNV 250
>gi|56964109|ref|YP_175840.1| hypothetical protein ABC2344 [Bacillus clausii KSM-K16]
gi|56910352|dbj|BAD64879.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 253
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 105/217 (48%), Gaps = 9/217 (4%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP---DIVAALSIT 72
FL P + + + + + ++ GG ER R S+ P L ++P DI +
Sbjct: 34 FLDPRMQEVAKSVIGQDGEIDLQFFGGADGCERKRASI-RPAYLKNEPIDWDISLFKAAY 92
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
N F +H D LG+++ TG+ RE GDI + + E + Y+ +L++VG
Sbjct: 93 AN-KFVTLTHRDVLGALMNTGMKRETFGDISVT-DNAFYVACTKEASAYIAIALKQVGKA 150
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
+V+ L L E K +SLR+DAL SA + LSR+K +LI G V+VNW
Sbjct: 151 TVTLEETDTLELPDEKWEEKPVTV--SSLRLDALLSALYGLSRAKAADLIGKGLVKVNWK 208
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKF 228
V + GD +SV G GR K+ + T+K K+
Sbjct: 209 VVEHPSFRVAIGDDLSVRGAGRAKVLKQEGVTKKDKY 245
>gi|251780297|ref|ZP_04823217.1| S4 domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243084612|gb|EES50502.1| S4 domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 254
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 13/229 (5%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
V ++F +P + E ++ K +G + ER +S + + P + L
Sbjct: 34 VFGNNFYSPKIWSWFKENCEN-SEFKVTCEGIFKDCERKMISFNN---IYDIPFPIKLLK 89
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
+ G F H DFLG IL GI R KIGD+I++ + F + ++ +L+++++K+G
Sbjct: 90 VQGKSKFSNLEHKDFLGGILSLGIERNKIGDLIVE-DNVCYFPIHEDIFKFLLSNVDKIG 148
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
I E + P+ K FK + +SLR+D + S KLSR+K LI G V
Sbjct: 149 KTPCCIAEI---QNEGDFPKIK-FKEDVILVSSLRIDGIVSKISKLSRAKAQMLIDQGQV 204
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 235
+++ + ++ + + + G G+ +GE I S++ GK+ + + +Y
Sbjct: 205 LIDYNKIKDKSYEVKVNERIVIRGIGKFIVGEVIGSSKSGKYKLIIKKY 253
>gi|418324603|ref|ZP_12935837.1| S4 domain protein [Staphylococcus pettenkoferi VCU012]
gi|365225290|gb|EHM66535.1| S4 domain protein [Staphylococcus pettenkoferi VCU012]
Length = 259
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 11/197 (5%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAR 96
GGY AER R + P +PDI V + +T F H LG+I+ GI R
Sbjct: 64 GGY-HAERQRAIIA-PSYY--EPDIEDFEVVLIEVTYPKKFVTIQHQHVLGTIMSMGIER 119
Query: 97 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 156
E++GDI++ + QF++ +L Y++ L ++ +V IP + K+F
Sbjct: 120 EQLGDILVN--ETIQFVLAKQLESYMMLELTRIKGATVKLNSIPFKDMIQSKEEWKAFHA 177
Query: 157 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
++LR+D + + SRS LI V+VN V L GD++S+ G GR +
Sbjct: 178 TVSALRLDVVLKEMIRKSRSIAKQLIEKKRVKVNHVIVDSVNFQLDVGDLLSIQGFGRAR 237
Query: 217 IGEI-NSTRKGKFAVEL 232
I ++ T+K K ++
Sbjct: 238 ITDVGGKTKKDKVHIQF 254
>gi|329766858|ref|ZP_08258386.1| hypothetical protein HMPREF0428_00083 [Gemella haemolysans M341]
gi|328837583|gb|EGF87208.1| hypothetical protein HMPREF0428_00083 [Gemella haemolysans M341]
Length = 256
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 10/215 (4%)
Query: 16 FLT--PPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 73
FLT ++ E ++A +D K GGY AE+ + + E D DIV L
Sbjct: 37 FLTNFEQIVLEQIVAY-NYSDFKIEFFGGYNDAEKKKAKIISNEYYDVDYDIVC-LKAKY 94
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
N F H + LG+I GI + GDI++ E V E+ADY+ K G V+
Sbjct: 95 NNKFNKIEHRNILGAIHNLGININRFGDIVVL-ENEVYIFVDEEIADYITMEFTKAGRVN 153
Query: 134 VSCTRIPL--LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
++ R+ L +A+E + + F+ + +S R+D++A+ SRSK+ + +++N
Sbjct: 154 LNFERVELADVAIE---KKYEDFEIVSSSFRLDSIAAKITNKSRSKVKEFLDQDFIKLNH 210
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
V DI+S+ GR + E +K
Sbjct: 211 VIVRNGEKNCTIQDIISIRKYGRFVVKEYKQNKKS 245
>gi|422883610|ref|ZP_16930059.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK49]
gi|332362883|gb|EGJ40676.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK49]
Length = 261
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 10/210 (4%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 89
K DV+ A Y +E R+ V L D ++ L I+ F SH +G++
Sbjct: 52 KQYDVQVFASSDYFPSELARVLVAPSYYQLNKDDFELSLLEISYASKFYKISHSQIMGTL 111
Query: 90 LGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 148
L GI R GDI++ G++ AQ V L Y I + KV + V + E
Sbjct: 112 LNQLGIERRTFGDILVVGDR-AQLFVDKRLTQYFIDHVSKVAKMPVRLKEVSFAEQLKEQ 170
Query: 149 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG--DI 206
+ + + + +SLR+D L ++ FKLSRS+ LIS V+VN+ + +L+ G D+
Sbjct: 171 KQAVTREILASSLRLDKLVASTFKLSRSQAAQLISGKHVKVNYA--VNDNPSLQVGLEDL 228
Query: 207 VSVSGKGRIKIGEINSTRKG---KFAVELI 233
+SV GR K+ N K K VEL+
Sbjct: 229 ISVRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|326693772|ref|ZP_08230777.1| S4 domain-containing protein [Leuconostoc argentinum KCTC 3773]
Length = 263
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+A L I F H LG+++ GI R +GDI+ Q ++ Q +V ++ Y+ +
Sbjct: 92 LAVLEINYPTKFTELHHAAILGALMHAGIKRTVVGDILGQDQRW-QIIVDSKMLTYIQQT 150
Query: 126 LEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+ +G V ++ +PL A+ + ++F T+ SLR+DA+ +A F + RS LI+
Sbjct: 151 VTMIGRVKITWMVLPLTQAITAQDDWEETF-TLLPSLRLDAVIAATFDIPRSLAKTLITQ 209
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
VR+NW T K T+ GD++SV GR+K+ ++ K
Sbjct: 210 QQVRLNWVTQAKPDHTVEIGDLISVRKYGRVKLAILDGYSK 250
>gi|373469182|ref|ZP_09560390.1| S4 domain protein [Lachnospiraceae bacterium oral taxon 082 str.
F0431]
gi|371764861|gb|EHO53227.1| S4 domain protein [Lachnospiraceae bacterium oral taxon 082 str.
F0431]
Length = 249
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 9/235 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGHPE 57
+AR A + V HS FL M +L +VK++ GGY +AER C PE
Sbjct: 15 LARNAYFKNIVTHSTFLNLYEQTIFEMIQNELPNVKSIMFGGYSEAERKVVCFYCDEKPE 74
Query: 58 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
+ + + F +H DFLG+I+ GI R IGDI + + A + +
Sbjct: 75 F--DMLEYIRVAPVNKKFA-DELTHRDFLGAIMNLGIERHMIGDICIV-DNVAHIITLKS 130
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+AD +I L V + V + + L+ R + K S R+D++ + + +SRSK
Sbjct: 131 MADTIINELGTVKHTKVVLNKESIENLK-TVNRVEYKKINIPSERLDSVIGSIYNISRSK 189
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINST-RKGKFAVE 231
+ I G V +N + ++ GDI++V G GR K I+ST RKG+ E
Sbjct: 190 VNMYIDAGRVFINSRQCLSHSMKVKDGDIITVRGLGRAKFLGISSTSRKGRLFAE 244
>gi|323352734|ref|ZP_08087704.1| S4 domain-containing protein YlmH [Streptococcus sanguinis VMC66]
gi|322121770|gb|EFX93516.1| S4 domain-containing protein YlmH [Streptococcus sanguinis VMC66]
Length = 260
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 8/209 (3%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGS 88
K DV+ A + +E R+ V P L D ++ L I+ F SH +G+
Sbjct: 51 KQYDVQVFASTDFFPSELARVLVA-PSYYQLNMDDFELSLLEISYASKFYKISHSQIMGT 109
Query: 89 ILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 147
+L GI R GDI++ GE+ AQ V LA Y I + K+ + V + E
Sbjct: 110 LLNQLGIERRTFGDILVVGER-AQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKE 168
Query: 148 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 207
++ + + + +SLR+D L ++ FKLSRS+ LIS V++N+ + D++
Sbjct: 169 QKQSATREILASSLRLDKLVASTFKLSRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLI 228
Query: 208 SVSGKGRIKIGEINSTRKG---KFAVELI 233
SV GR K+ N K K VEL+
Sbjct: 229 SVRRFGRFKVLRENGLSKNGKHKLTVELL 257
>gi|281492478|ref|YP_003354458.1| S4 domain-containing RNA-binding protein [Lactococcus lactis subsp.
lactis KF147]
gi|281376142|gb|ADA65633.1| RNA-binding protein, containing S4 domain [Lactococcus lactis
subsp. lactis KF147]
Length = 263
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 5/174 (2%)
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELA 119
D DI + L I F SH LG+ LG G+ R+++GDII+ K Q V L
Sbjct: 85 EDFDI-SLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNK-IQVFVSKHLV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ ++EK+G +V I L L E + + +LRVD + + FK+SR+
Sbjct: 143 ESF-KAIEKIGRAAVKIQEISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKISRNIAT 201
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
N++ + V+VN+ + K ++ D++SV G GRIKI I + T+KGK VE+
Sbjct: 202 NMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKILRILDFTKKGKQRVEI 255
>gi|403046887|ref|ZP_10902356.1| S4 domain-containing protein YlmH [Staphylococcus sp. OJ82]
gi|402763583|gb|EJX17676.1| S4 domain-containing protein YlmH [Staphylococcus sp. OJ82]
Length = 259
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 7/200 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILG 91
D++ GG P AER R V P+ L + ++ + + ++ F H LG+I+
Sbjct: 57 DLEVTFFGG-PYAERKRAIVA-PDYLMPEEELFEIVLVEIDYPQKFVTLQHQHILGTIMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF + +L Y++ L ++ +V IP+ +
Sbjct: 115 LGIEREQLGDIIV--DDSIQFTLTKQLESYIMLELNRIKGATVKLNSIPIKDMIQSKEHW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
++++ + LR+D + + SR+ LI V+VN T + L +GD++S+ G
Sbjct: 173 QTYEATVSGLRLDVILKEMIRKSRTIAKQLIDKKRVKVNHTMIDATDFQLDSGDLLSIQG 232
Query: 212 KGRIKIGEI-NSTRKGKFAV 230
GR I +I T+K K +
Sbjct: 233 YGRAMITDIGGKTKKDKVRI 252
>gi|392971788|ref|ZP_10337181.1| S4 domain-containing protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|392510327|emb|CCI60471.1| S4 domain-containing protein [Staphylococcus equorum subsp. equorum
Mu2]
Length = 259
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 7/200 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILG 91
D++ GG P AER R V P+ L + ++ + + ++ F H LG+I+
Sbjct: 57 DLEVTFFGG-PYAERKRAIVA-PDYLVPEEELFEIVLVEIDYPQKFVTLQHQHILGTIMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF + +L Y++ L ++ +V IP+ +
Sbjct: 115 LGIEREQLGDIIV--DDSIQFTLTKQLESYIMLELNRIKGATVKLNSIPIKDMIQSKEHW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
++++ + LR+D + + SR+ LI V+VN T + L +GD++S+ G
Sbjct: 173 QTYEATVSGLRLDVILKEMIRKSRTIAKQLIDKKRVKVNHTMIDATDFQLDSGDLLSIQG 232
Query: 212 KGRIKIGEI-NSTRKGKFAV 230
GR I +I T+K K +
Sbjct: 233 YGRAMITDIGGKTKKDKVRI 252
>gi|295706356|ref|YP_003599431.1| RNA binding protein [Bacillus megaterium DSM 319]
gi|294804015|gb|ADF41081.1| RNA binding protein [Bacillus megaterium DSM 319]
Length = 257
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 11/232 (4%)
Query: 8 RREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
+ +VLH +DFL P + + +V+ GG P AER R ++ +P+
Sbjct: 22 KEDVLHQYSPKLTDFLDPREQQIVTAIVGTEGEVQVSFDGGQPFAERKR-ALLYPDYYVP 80
Query: 62 DPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+ + N+ F H LGS + G+ R K GDI++ G+ Q +V E++
Sbjct: 81 ESEDFQLHMYELNYPKKFVTIEHPQVLGSAMSLGLRRSKFGDILVAGD-DIQLVVAEEIS 139
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L +G VS + I L +S+R+D L S LSR K+
Sbjct: 140 SYIEMNLTSIGKAKVSLSSIQREQLHVVKEELVEHVYTVSSMRLDVLLSTIHNLSRQKVQ 199
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I+NG V+VN+ + + GDI+S+ G GR +I + T+K K+ +
Sbjct: 200 PFIANGAVKVNFKVIEQPSFECHEGDILSLRGHGRSRIVSLEGKTKKEKWRI 251
>gi|449984140|ref|ZP_21818857.1| hypothetical protein SMU52_01774 [Streptococcus mutans NFSM2]
gi|449180608|gb|EMB82761.1| hypothetical protein SMU52_01774 [Streptococcus mutans NFSM2]
Length = 262
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V+ IP K + +S+R+D + +A KLSR K LI + V
Sbjct: 151 KIGKATVAFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|422858980|ref|ZP_16905630.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1057]
gi|327458760|gb|EGF05108.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1057]
Length = 261
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 12/228 (5%)
Query: 16 FLTPPVLKESMMALEK----LADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAAL 69
F T P L +++ K DV+ A Y +E R+ V P L D ++ L
Sbjct: 33 FETTPFLNPHQVSILKNIGKQYDVQVFASSDYFPSELARVLVA-PSYYQLNMDDFELSLL 91
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
I+ F SH +G++L GI R GDI++ G++ AQ V LA Y I + K
Sbjct: 92 EISYASKFYKISHSQIMGTLLNQLGIERRTFGDILVVGDR-AQLFVDKRLAQYFIDHVTK 150
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V + V + E + + + + +SLR+D L ++ FKLSRS+ LIS V+
Sbjct: 151 VAKMPVKLKEVSFEEQLKEQKQAVTREILASSLRLDKLVASTFKLSRSQAAQLISGKHVK 210
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAVELI 233
+N+ + D++SV GR K+ N K K VEL+
Sbjct: 211 MNYAVNDNPSQQVGLEDLISVRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|333448148|ref|ZP_08483090.1| S4 domain-containing protein [Leuconostoc inhae KCTC 3774]
Length = 257
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+A L I F H LG+ + GI RE IGDI L +K Q +V ++ Y+ +
Sbjct: 92 LAVLEIKYPVKFAELHHSMILGAFMSAGIKREVIGDI-LSNDKKWQVIVDAKMITYIQQT 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
++K+G + + L + + +SLR+D S F +SRS +LI
Sbjct: 151 VQKIGRIKIELIARDLKDVIAVHDDWNEIFLLLSSLRIDTTISMAFNISRSVAKSLIEQQ 210
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
VRVNWTT+ K + GDIVSV GR+++
Sbjct: 211 QVRVNWTTIVKPDHVVAMGDIVSVRKYGRLQL 242
>gi|449920190|ref|ZP_21798378.1| hypothetical protein SMU21_05496 [Streptococcus mutans 1SM1]
gi|449158983|gb|EMB62381.1| hypothetical protein SMU21_05496 [Streptococcus mutans 1SM1]
Length = 262
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP P + + +S+R+D + +A KLSR + LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQPHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|422860639|ref|ZP_16907283.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK330]
gi|327469022|gb|EGF14494.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK330]
Length = 261
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 97/209 (46%), Gaps = 8/209 (3%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGS 88
K DV+ A Y +E R+ V P L D ++ L I+ F SH +G+
Sbjct: 52 KQYDVQVFASSDYFPSELARVLVA-PSYYQLNMDDFELSLLEISYASKFYKISHSQIMGT 110
Query: 89 ILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 147
+L GI R GDI++ G++ AQ V LA Y I + KV + V + E
Sbjct: 111 LLNQLGIERRTFGDILVVGDR-AQLFVDKRLAQYFIDHVTKVAKMPVKLKEVSFEEQLKE 169
Query: 148 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 207
+ + + + +SLR+D L ++ FKLSRS+ LIS V++N+ + D++
Sbjct: 170 QKQAVTREILASSLRLDKLVASTFKLSRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLI 229
Query: 208 SVSGKGRIKIGEINSTRKG---KFAVELI 233
SV GR K+ N K K VEL+
Sbjct: 230 SVRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|313890772|ref|ZP_07824397.1| S4 domain protein [Streptococcus pseudoporcinus SPIN 20026]
gi|416851507|ref|ZP_11908652.1| S4 domain protein [Streptococcus pseudoporcinus LQ 940-04]
gi|313120873|gb|EFR43987.1| S4 domain protein [Streptococcus pseudoporcinus SPIN 20026]
gi|356738996|gb|EHI64228.1| S4 domain protein [Streptococcus pseudoporcinus LQ 940-04]
Length = 262
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 108/222 (48%), Gaps = 5/222 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 72
++FL P + E + + +D + + E R+ + ++ D +A + I+
Sbjct: 37 TEFLNPRQV-EILKIVVASSDCHCFSSSDFYHTEYGRVIIAPDYYQLNEGDFELAVVDIS 95
Query: 73 GNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
N F H LG+ + GI R +GDI++ AQ + + Y IT++ K+
Sbjct: 96 YNAKFNTIKHAQILGTFIHELGIQRSLLGDILV-APGHAQVMTTKSMLSYAITNISKIAR 154
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
SV+ + L L + + + +SLR+D L + FKLSRS+ + L+ + V++N+
Sbjct: 155 ASVTLKEVSLENLIQTNVGEEHLELLFSSLRLDVLIANVFKLSRSQAIKLVESEKVKINY 214
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
K L GD++SV G GR ++ E N T+KGK+ + +
Sbjct: 215 RISRKASDLLGIGDLISVRGFGRFQLLEDNGLTKKGKYKLTI 256
>gi|139473462|ref|YP_001128178.1| RNA binding protein [Streptococcus pyogenes str. Manfredo]
gi|134271709|emb|CAM29942.1| conserved hypothetical protein [Streptococcus pyogenes str.
Manfredo]
Length = 263
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 69
++FL P +E M+ +L L D+K Y +E R+ + G+ + SD I A +
Sbjct: 38 TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
I+ F +H LG+++ G+ R GD+ + E G AQ ++ EL DY + ++
Sbjct: 94 EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+ SV + L +++ + +S R+D + + K SR++++ LI +
Sbjct: 152 KIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKI 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+VN+ V K L GD+VS+ G GR + N T+ GK + L
Sbjct: 212 KVNYRLVNKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257
>gi|442805086|ref|YP_007373235.1| RNA-binding S4 domain-containing protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
gi|442740936|gb|AGC68625.1| RNA-binding S4 domain-containing protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
Length = 265
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 8/205 (3%)
Query: 38 VAQGGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNFG-FQPCSHGDFLGSILGT 92
V GGY A+R L PE +T D DI I + +H D LG+ILGT
Sbjct: 63 VFYGGYEGAQRAVLIFLPDYIRPEEITDD-DINPLSCIRAKYSSVNSVTHRDILGAILGT 121
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
G+ RE IGDI++ G + +V+ E+ YL ++ G + + IPL + + K
Sbjct: 122 GLKREVIGDILVNGN-SSDIIVMKEVVPYLESNFSSAGKTKLEISVIPLSEIRIPEAKFK 180
Query: 153 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
ASLR+D++ S+ F +SR K I G V +N+ K + GD ++V G
Sbjct: 181 IINDTVASLRLDSVVSSAFSVSREKAAEAIKAGRVFLNYLECNKTDKQVNEGDFITVRGM 240
Query: 213 GRIKIGEI-NSTRKGKFAVELIQYL 236
G+ + ++ T KG+ V + +Y+
Sbjct: 241 GKAVLQQVGGKTGKGRIRVVIAKYI 265
>gi|384045140|ref|YP_005493157.1| RNA-binding S4 domain-containing protein [Bacillus megaterium
WSH-002]
gi|345442831|gb|AEN87848.1| RNA-binding S4 domain protein [Bacillus megaterium WSH-002]
Length = 257
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 8 RREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
+ +VLH +DFL P + + +V+ GG P AER R ++ +P+
Sbjct: 22 KEDVLHQYSPKLTDFLDPREQQIVTAIVGTEGEVQVSFDGGQPFAERKR-ALLYPDYYVP 80
Query: 62 DPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+ N+ F H LGS + G+ R K GDI++ G+ Q +V E++
Sbjct: 81 QSEDFQLCMYELNYPKKFVTIEHPQVLGSAMSLGLRRSKFGDILVAGD-DIQLVVAEEIS 139
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L +G VS + I L +S+R+D L S LSR K+
Sbjct: 140 SYIEMNLTSIGKAKVSLSSIQREQLHVVKEELIEHVYTVSSMRLDVLLSTIHNLSRQKVQ 199
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I+NG V+VN+ + + GDI+S+ G GR +I + T+K K+ +
Sbjct: 200 PFIANGAVKVNFKVIEQPSFECHEGDILSLRGHGRSRIVSLEGKTKKEKWRI 251
>gi|300173567|ref|YP_003772733.1| S4 domain-containing protein [Leuconostoc gasicomitatum LMG 18811]
gi|299887946|emb|CBL91914.1| S4 domain protein [Leuconostoc gasicomitatum LMG 18811]
Length = 263
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+A L I F H LG+ + GI RE IGDI L +K Q +V ++ Y+ +
Sbjct: 92 LAVLEIKYPVKFAELHHSMILGAFMSAGIKREVIGDI-LSNDKKWQVIVDAKMITYIQQT 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
++K+G + + L + + +SLR+D S F +SRS +LI
Sbjct: 151 VQKIGRIKIELIARDLKDVIAVHDDWNEIFLLLSSLRIDTTISMAFNISRSVAKSLIEQQ 210
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
VRVNWTT+ K + GDIVSV GR+++
Sbjct: 211 QVRVNWTTIVKPDHVVAMGDIVSVRKYGRLQL 242
>gi|342732562|ref|YP_004771401.1| RNA-binding S4 domain-containing protein [Candidatus Arthromitus
sp. SFB-mouse-Japan]
gi|384455957|ref|YP_005668552.1| S4 domain-containing protein [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417960523|ref|ZP_12603108.1| hypothetical protein SFB1_326G3 [Candidatus Arthromitus sp. SFB-1]
gi|417960704|ref|ZP_12603246.1| hypothetical protein SFB2_000G5 [Candidatus Arthromitus sp. SFB-2]
gi|417965490|ref|ZP_12607008.1| hypothetical protein SFB4_249G1 [Candidatus Arthromitus sp. SFB-4]
gi|417967085|ref|ZP_12608281.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-5]
gi|417969082|ref|ZP_12610044.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-co]
gi|418016032|ref|ZP_12655597.1| S4 domain-containing protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372818|ref|ZP_12964910.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330017|dbj|BAK56659.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506367|gb|EGX28661.1| S4 domain-containing protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984300|dbj|BAK79976.1| S4 domain protein [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380330842|gb|EIA22005.1| hypothetical protein SFB1_326G3 [Candidatus Arthromitus sp. SFB-1]
gi|380335279|gb|EIA25512.1| hypothetical protein SFB2_000G5 [Candidatus Arthromitus sp. SFB-2]
gi|380337448|gb|EIA26502.1| hypothetical protein SFB4_249G1 [Candidatus Arthromitus sp. SFB-4]
gi|380338195|gb|EIA27122.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-5]
gi|380338451|gb|EIA27338.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-co]
gi|380342487|gb|EIA30932.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 258
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 109/231 (47%), Gaps = 22/231 (9%)
Query: 7 SRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGY---PQAERCRLSVGHPEALTSDP 63
S R ++ ++F T V L+ K + GY AERC ++ S
Sbjct: 31 SGRTIVTNEFYTINVCN----TLKNFLSSKELNVSGYGFSDDAERCLIAFSLASIDVSIF 86
Query: 64 DIVA-ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 122
D A + I+ N F SH DFLGSI+ G +REKIGD++++G VV + +Y+
Sbjct: 87 DNAAKVVKISYNDKFSKLSHRDFLGSIMSLGFSREKIGDLVIEGN-CVYTPVVSDFVNYI 145
Query: 123 ITSLEKVG----NVSVSC-TRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
+ +L KV NV+V R+P R + I +SLR+D + S+ LSR K
Sbjct: 146 VQNLTKVRYSPVNVTVELFNRLP-------QKRFEILYKIVSSLRIDNIVSSLINLSRDK 198
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGK 227
++ G V++N + + DI+ ++G G+ K E + ST K K
Sbjct: 199 AKAIVKEGKVKINGIFESNPDRKVCENDIIVIAGFGKFKFKESLGSTSKNK 249
>gi|340355069|ref|ZP_08677762.1| S4 domain-containing protein YlmH [Sporosarcina newyorkensis 2681]
gi|339622750|gb|EGQ27264.1| S4 domain-containing protein YlmH [Sporosarcina newyorkensis 2681]
Length = 261
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 17/226 (7%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--IVAAL 69
++FL P + ES++ + +D+ ++GG+P AER R+ + +P+ T D ++
Sbjct: 38 TEFLDPRQRFITESIV---RNSDLVIASEGGFPDAERKRVLI-YPDYYTPSEDDFQISFY 93
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ F H LGS+L GI R + GDI + E+ QF V E+++Y+ + +V
Sbjct: 94 QVQYPQKFVNMKHSQLLGSLLSLGIDRSRFGDIRI-TEEAVQFAVTAEVSEYIHVNFTQV 152
Query: 130 GNVSVSCTRIPLL----ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
G V VS P+L ++ + T+ I +SLR+D + ++ K SR+K +LI
Sbjct: 153 GKVKVSIQ--PVLNADDVIDVQEEWTEEMHII-SSLRLDTVVASLAKCSRAKASSLIKGE 209
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAV 230
V+VNW + + + DI+SV G GR K IG TRK K V
Sbjct: 210 KVKVNWAIIDQQAFEVEEQDILSVRGFGRYKIIGIEGRTRKDKIRV 255
>gi|317495383|ref|ZP_07953752.1| S4 domain-containing protein [Gemella morbillorum M424]
gi|316914442|gb|EFV35919.1| S4 domain-containing protein [Gemella morbillorum M424]
Length = 256
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 106/223 (47%), Gaps = 9/223 (4%)
Query: 16 FLT---PPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSIT 72
FLT +LK+ +M +D+ GG AER + + E D +I L
Sbjct: 37 FLTNFEQVILKKIIMY--NYSDMSIDFFGGTADAERKKAKIIANEYYDIDYEI-TCLRAN 93
Query: 73 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNV 132
N F H D LG++ GI +IGDI++ E+ V E+ADY++ L K+G +
Sbjct: 94 YNNKFDKIQHRDVLGAVHNMGINFNRIGDIVVL-EREIYIFVDYEIADYIMMQLTKIGRI 152
Query: 133 SVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
++ +I L+ + E + F + +S R+D+L + SRSK+ + +++N +
Sbjct: 153 NLQFEKIDLVEVNIEKE-YEEFDIVSSSFRLDSLVAKITNKSRSKVKEFLEQEFIKLNHS 211
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG-KFAVELIQ 234
+ GD++S+ GR + E +K K+ +++++
Sbjct: 212 VIKNGEKNCVNGDVISIRKYGRFILKEYTQNKKSLKYRIKVLK 254
>gi|433448683|ref|ZP_20411549.1| 30S ribosomal protein S4e [Weissella ceti NC36]
gi|429539610|gb|ELA07646.1| 30S ribosomal protein S4e [Weissella ceti NC36]
Length = 186
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 15/189 (7%)
Query: 56 PEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 113
P+ S PD + L + + F H LG+++ +G+ RE GDI++ + Q
Sbjct: 2 PDYYVSSPDDFEMTLLELEYSQKFATLQHRTILGAMVHSGLKRESFGDIVVDDNQRWQIA 61
Query: 114 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-----SLRVDALAS 168
V +A ++ L ++G ++ L + E T +E+ SLR+D + +
Sbjct: 62 VSNHIAPFVQQDLTRMGR-----NKVKLKPVSAEQAITLVQDWVESDVTVTSLRLDTVVA 116
Query: 169 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRK 225
++LSR++ LI G V+VNWT +T+ T+ T D++SV G GR++I + I K
Sbjct: 117 QAYRLSRTQAKELIERGLVKVNWTEITQADFTIATDDLLSVRGYGRVRITQNNGITKKEK 176
Query: 226 GKFAVELIQ 234
+ + +IQ
Sbjct: 177 HRLTIAVIQ 185
>gi|24379037|ref|NP_720992.1| hypothetical protein SMU_556 [Streptococcus mutans UA159]
gi|24376932|gb|AAN58298.1|AE014900_6 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 263
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 38 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 92
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 93 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP K + +S+R+D + +A KLSR K LI + V
Sbjct: 152 KIGKATVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 212 KLNYLVQPKVSQLIDIGDLISVRGYGRFTISRDNGLSKG 250
>gi|418039120|ref|ZP_12677429.1| hypothetical protein LLCRE1631_02236 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|354692480|gb|EHE92303.1| hypothetical protein LLCRE1631_02236 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 219
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 5/174 (2%)
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELA 119
D DI L I F SH LG+ LG G+ R+++GDII+ K Q V L
Sbjct: 41 EDFDI-CLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNK-IQVFVSKHLV 98
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ ++EK+G ++ I L L E + + +LRVD + + FK+SR+
Sbjct: 99 ESF-KAIEKIGRAAIKIQEISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKISRNIAT 157
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
N++ + V+VN+ + K ++ D++SV G GRIKI I + T+KGK VE+
Sbjct: 158 NMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKILRILDFTKKGKQRVEI 211
>gi|422852130|ref|ZP_16898800.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK150]
gi|325694117|gb|EGD36035.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK150]
Length = 261
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 10/210 (4%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 89
K DV+ A + +E R+ V L D ++ L I+ F SH +G++
Sbjct: 52 KQYDVQVFASTDFFPSELARVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTL 111
Query: 90 LGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 148
L GI R GDI++ G++ AQ V LA Y I + K+ + V + E
Sbjct: 112 LNQLGIERRTFGDILVVGDR-AQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQ 170
Query: 149 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG--DI 206
+ + + + +SLR+D L ++ FKLSRS+ LIS V+VN+ + +L+ G D+
Sbjct: 171 KQAVTREILASSLRLDKLVASTFKLSRSQAAQLISGKHVKVNYA--VNDNPSLQVGLEDL 228
Query: 207 VSVSGKGRIKIGEINSTRKG---KFAVELI 233
+SV GR K+ N K K VEL+
Sbjct: 229 ISVRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|422849173|ref|ZP_16895849.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK115]
gi|325690194|gb|EGD32198.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK115]
Length = 261
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 8/209 (3%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGS 88
K DV+ A + +E R+ V P L D ++ L I+ F SH +G+
Sbjct: 52 KQYDVQVFASTDFFPSELARVLVA-PSYYQLNMDDFELSLLEISYASKFYKISHSQIMGT 110
Query: 89 ILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 147
+L GI R GDI++ G++ AQ V LA Y I + K+ + V + E
Sbjct: 111 LLNHLGIERRTFGDILVVGDR-AQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLRE 169
Query: 148 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 207
+ + + + +SLR+D L ++ FKLSRS+ V LIS V++N+ + D++
Sbjct: 170 QKQAVTKEILASSLRLDKLVASTFKLSRSQAVQLISGKHVKMNYAVNDNPSQQVGLEDLI 229
Query: 208 SVSGKGRIKIGEINSTRKG---KFAVELI 233
SV GR K+ N K K VEL+
Sbjct: 230 SVRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|290890673|ref|ZP_06553743.1| hypothetical protein AWRIB429_1133 [Oenococcus oeni AWRIB429]
gi|419758702|ref|ZP_14285016.1| cell division protein [Oenococcus oeni AWRIB304]
gi|421195618|ref|ZP_15652823.1| cell division protein [Oenococcus oeni AWRIB568]
gi|421197730|ref|ZP_15654902.1| cell division protein [Oenococcus oeni AWRIB576]
gi|290479648|gb|EFD88302.1| hypothetical protein AWRIB429_1133 [Oenococcus oeni AWRIB429]
gi|399904532|gb|EJN91986.1| cell division protein [Oenococcus oeni AWRIB304]
gi|399974782|gb|EJO08865.1| cell division protein [Oenococcus oeni AWRIB576]
gi|399975448|gb|EJO09500.1| cell division protein [Oenococcus oeni AWRIB568]
Length = 256
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 7/203 (3%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGN 74
FL P K ++ L K GGY +AE R +G H E +D I + L +
Sbjct: 38 FLNPQEQK-ILLELAKQIGFSVRFGGGYQRAENKRALIGDHKE---NDFQI-SLLQLNYA 92
Query: 75 FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV 134
+ H LGS+L GI+ ++IGD+I + + Q L+ LAD+++ ++++ + +
Sbjct: 93 SHYVHLHHSTVLGSLLHHGISYDRIGDVIHEND-NWQLLIDSSLADFVVENVKRAASKKI 151
Query: 135 SCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTV 194
+ +I + K + + +S R+D L S + SR+ +LI G V VNW
Sbjct: 152 TFEKISFEKILNPQSDEKEKEIVISSQRIDLLISQIYNFSRAHAKDLIETGQVMVNWFEK 211
Query: 195 TKNGTTLRTGDIVSVSGKGRIKI 217
+ GD+VS G GRI++
Sbjct: 212 DNTSYLAKLGDVVSTHGYGRIRL 234
>gi|15673847|ref|NP_268022.1| hypothetical protein L118668 [Lactococcus lactis subsp. lactis
Il1403]
gi|385831350|ref|YP_005869163.1| S4 domain-containing RNA-binding protein [Lactococcus lactis subsp.
lactis CV56]
gi|12724897|gb|AAK05963.1|AE006416_8 hypothetical protein L118668 [Lactococcus lactis subsp. lactis
Il1403]
gi|326407358|gb|ADZ64429.1| S4 domain-containing RNA-binding protein [Lactococcus lactis subsp.
lactis CV56]
Length = 263
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 5/174 (2%)
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELA 119
D DI L I F SH LG+ LG G+ R+++GDII+ K Q V L
Sbjct: 85 EDFDI-CLLEINYASKFVELSHAQVLGTFLGQAGVKRQELGDIIVSDNK-IQVFVSKHLV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ ++EK+G ++ I L L E + + +LRVD + + FK+SR+
Sbjct: 143 ESF-KAIEKIGRAAIKIQEISLENLVEETDKAVREVVLVDNLRVDKMIAVAFKISRNIAT 201
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
N++ + V+VN+ + K ++ D++SV G GRIKI I + T+KGK VE+
Sbjct: 202 NMLESKKVKVNYLEIDKKDFSVGLDDLISVRGFGRIKILRILDFTKKGKQRVEI 255
>gi|325845150|ref|ZP_08168459.1| S4 domain protein [Turicibacter sp. HGF1]
gi|325488815|gb|EGC91215.1| S4 domain protein [Turicibacter sp. HGF1]
Length = 255
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 5/220 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDIVAALSI 71
+ FLT + M + + ++V+ +GG+ +AER R ++ +P+ L + V I
Sbjct: 32 TKFLTLREQEIVQMLVNQNSEVRVSFEGGFQKAERKR-AILYPDYLKLNNLSQYVKGYEI 90
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
N H LGS+ I R IGDI++ + E +++ + KVG
Sbjct: 91 EYNQKLVTLKHPQILGSLTALNIDRSLIGDIVILSNGRIYLAICEEFSEFFLQHFHKVGK 150
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
S+ + E + + F+ I +S+R+D + ++ K+SRS++ I V+VNW
Sbjct: 151 HSILIKESSISQFE-KIDQEDEFEIIISSMRLDVIVASLMKVSRSQVHEYIMQAGVQVNW 209
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
+ + GD++S+ GR ++ + S T+ +F +
Sbjct: 210 VIEQNHSRICQIGDVLSIKRHGRFRLKVLKSRTKSERFVI 249
>gi|397649283|ref|YP_006489810.1| hypothetical protein SMUGS5_02445 [Streptococcus mutans GS-5]
gi|449863370|ref|ZP_21778216.1| hypothetical protein SMU101_01210 [Streptococcus mutans U2B]
gi|449870286|ref|ZP_21780576.1| hypothetical protein SMU10_03291 [Streptococcus mutans 8ID3]
gi|449908651|ref|ZP_21793875.1| hypothetical protein SMU109_02338 [Streptococcus mutans OMZ175]
gi|449996502|ref|ZP_21823564.1| hypothetical protein SMU54_05838 [Streptococcus mutans A9]
gi|392602852|gb|AFM81016.1| hypothetical protein SMUGS5_02445 [Streptococcus mutans GS-5]
gi|449156828|gb|EMB60286.1| hypothetical protein SMU10_03291 [Streptococcus mutans 8ID3]
gi|449183007|gb|EMB85006.1| hypothetical protein SMU54_05838 [Streptococcus mutans A9]
gi|449262788|gb|EMC60231.1| hypothetical protein SMU109_02338 [Streptococcus mutans OMZ175]
gi|449265099|gb|EMC62428.1| hypothetical protein SMU101_01210 [Streptococcus mutans U2B]
Length = 262
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP K + +S+R+D + +A KLSR K LI + V
Sbjct: 151 KIGKATVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|387786614|ref|YP_006251710.1| hypothetical protein SMULJ23_1433 [Streptococcus mutans LJ23]
gi|379133015|dbj|BAL69767.1| hypothetical protein SMULJ23_1433 [Streptococcus mutans LJ23]
Length = 263
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 38 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 92
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 93 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP K + +S+R+D + +A KLSR K LI + V
Sbjct: 152 KIGKATVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 212 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 250
>gi|422879369|ref|ZP_16925835.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1059]
gi|422929215|ref|ZP_16962157.1| S4 domain-containing protein YlmH [Streptococcus sanguinis ATCC
29667]
gi|422932186|ref|ZP_16965117.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK340]
gi|332366081|gb|EGJ43837.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK1059]
gi|339615031|gb|EGQ19714.1| S4 domain-containing protein YlmH [Streptococcus sanguinis ATCC
29667]
gi|339618970|gb|EGQ23560.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK340]
Length = 261
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 8/209 (3%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGS 88
K DV+ A Y +E R+ V P L D ++ L I F SH +G+
Sbjct: 52 KQYDVQVFASSDYFPSELARVLVA-PSYYQLNMDDFELSLLEIYYASKFYKISHSQIMGT 110
Query: 89 ILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 147
+L GI R GDI++ G++ AQ V L+ Y I + K+ + V + L E
Sbjct: 111 LLNQLGIERRTFGDILVVGDR-AQLFVDKRLSQYFIDHVSKIAKMPVRLKEVSLAEQLKE 169
Query: 148 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 207
+ + + + +SLR+D L ++ FKLSRS+ LIS V++N+ + D++
Sbjct: 170 QKQAVTREILASSLRLDKLVASTFKLSRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLI 229
Query: 208 SVSGKGRIKIGEINSTRKG---KFAVELI 233
SV GR K+ N K K VEL+
Sbjct: 230 SVRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|422863097|ref|ZP_16909729.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK408]
gi|327473397|gb|EGF18817.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK408]
Length = 261
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 6/208 (2%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 89
K DV+ A Y +E R+ V L D ++ L I+ F SH +G++
Sbjct: 52 KQYDVQVFASSDYFPSELARVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTL 111
Query: 90 LGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 148
L GI R GDI++ G+ AQ V LA Y I + K+ + V + E
Sbjct: 112 LNQLGIERRTFGDILVVGD-CAQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQ 170
Query: 149 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVS 208
+ + + + +SLR+D L ++ FKLSRS+ LIS V++N+ + D++S
Sbjct: 171 KQAATREILASSLRLDKLVASTFKLSRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLIS 230
Query: 209 VSGKGRIKIGEINSTRKG---KFAVELI 233
V GR K+ N K K VEL+
Sbjct: 231 VRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|257439837|ref|ZP_05615592.1| putative S4 domain protein [Faecalibacterium prausnitzii A2-165]
gi|257197746|gb|EEU96030.1| S4 domain protein [Faecalibacterium prausnitzii A2-165]
Length = 273
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 8/242 (3%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPE 57
+AR A R +S FL+ + AL + ADV +GG+P AER L +
Sbjct: 33 LARAAEGRGIARYSGFLSDREQDLARAALNR-ADVPESDHHFEGGWPGAERKLLCLEPEG 91
Query: 58 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE-KGAQFLVVP 116
+ P L+ G SH D+LGS++G + RE +GDI+L + G ++
Sbjct: 92 CYPASPLCCVKLTCRTLSGAALPSHKDYLGSLMGLELRREALGDIVLPADTPGTAYVFAL 151
Query: 117 ELADYLIT-SLEKVGNVSVSCTRIPLLAL-EYEPPRTKSFKTIEASLRVDALASAGFKLS 174
E A LI L +VG V+ T + L + E+ K+ +SLR+DA+ +A S
Sbjct: 152 ETAGELICRELLQVGRTEVTATLLSLDEVPEFPQAERKTQTATVSSLRLDAVLAAMLHCS 211
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELI 233
R + I+ G V +N + GD+ +V GKGR + + ++K + +E
Sbjct: 212 RGQACEWIAAGRVEINHLPAESAHAPVYEGDVFTVRGKGRFGLTALPGKSKKDRSIIEFF 271
Query: 234 QY 235
QY
Sbjct: 272 QY 273
>gi|209559680|ref|YP_002286152.1| hypothetical protein Spy49_1169c [Streptococcus pyogenes NZ131]
gi|209540881|gb|ACI61457.1| hypothetical protein Spy49_1169c [Streptococcus pyogenes NZ131]
Length = 263
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 69
++FL P +E M+ +L L D+K Y +E R+ + G+ + SD I A +
Sbjct: 38 TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
I+ F +H LG+++ G+ R GD+ + E G AQ L+ EL DY + ++
Sbjct: 94 EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLLIKRELLDYFLGTIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+ SV + L +++ + +S R+D + + K SR++++ LI +
Sbjct: 152 KIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKI 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+VN+ K L GD+VS+ G GR + N T+ GK + L
Sbjct: 212 KVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257
>gi|293376233|ref|ZP_06622476.1| S4 domain protein [Turicibacter sanguinis PC909]
gi|292645125|gb|EFF63192.1| S4 domain protein [Turicibacter sanguinis PC909]
Length = 255
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 5/220 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDIVAALSI 71
+ FLT + M + + ++V+ +GG+ +AER R ++ +P+ L + V I
Sbjct: 32 TKFLTLREQEIVQMLVNQNSEVRVSFEGGFQKAERKR-AILYPDYLKLNNLSQYVKGYEI 90
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
N H LGS+ I R IGDI++ + E +++ + KVG
Sbjct: 91 EYNQKLVTLKHPQILGSLTALNIDRSLIGDIVVLSNGRIYLAICEEFSEFFLQHFHKVGK 150
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
S+ + E + + F+ I +S+R+D + ++ K+SRS++ I V+VNW
Sbjct: 151 HSILIKESSISQFE-KIDQEDEFEIIISSMRLDVIVASLMKVSRSQVHEYIMQAGVQVNW 209
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
+ + GD++S+ GR ++ + S T+ +F +
Sbjct: 210 VIEQNHSRICQIGDVLSIKRHGRFRLKVLKSRTKSERFVI 249
>gi|302380712|ref|ZP_07269177.1| S4 domain protein [Finegoldia magna ACS-171-V-Col3]
gi|303233951|ref|ZP_07320600.1| S4 domain protein [Finegoldia magna BVS033A4]
gi|417926557|ref|ZP_12569954.1| hypothetical protein HMPREF9489_0484 [Finegoldia magna
SY403409CC001050417]
gi|302311655|gb|EFK93671.1| S4 domain protein [Finegoldia magna ACS-171-V-Col3]
gi|302494876|gb|EFL54633.1| S4 domain protein [Finegoldia magna BVS033A4]
gi|341588925|gb|EGS32295.1| hypothetical protein HMPREF9489_0484 [Finegoldia magna
SY403409CC001050417]
Length = 258
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 10/233 (4%)
Query: 9 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG----HPEALTSDPD 64
+ + +DF+ P ++ ++ L DV +A E + + + E + D
Sbjct: 31 KTIYSTDFMNPKEIEYAISILNTETDVGYMATNCPKNCENSIIIMWDRYCYSEEYINMFD 90
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
+ L I + Q SH D LG++L GI REKIGDI K + +L
Sbjct: 91 YIGLLEIQTD---QEISHRDILGAVLNLGINREKIGDIFTHN-KRFYICATNTMIKFLNL 146
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+L K+ ++S T I +E + + KSF I S R+D L S +SR +I N
Sbjct: 147 NLTKIKKFNIS-TSIVDKNIEKDEEKYKSFTGIINSERLDCLVSEMANISRKDAQIMIKN 205
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQYL 236
+++N+ ++ ++ +VS+ G GR ++ E + +T+K K ++ I+Y+
Sbjct: 206 KKIKLNYEVLSNTSKSVEENSLVSIRGYGRYRLIEYLGNTKKDKLRIKYIKYI 258
>gi|169824335|ref|YP_001691946.1| putative RNA binding protein [Finegoldia magna ATCC 29328]
gi|167831140|dbj|BAG08056.1| putative RNA binding protein [Finegoldia magna ATCC 29328]
Length = 258
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 10/233 (4%)
Query: 9 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG----HPEALTSDPD 64
+ + +DF+ P ++ ++ L DV +A E + + + E + D
Sbjct: 31 KTIYSTDFMNPKEIEYAISILNTETDVGYMATNCPKNCENSIIIMWDRYCYSEEYINMFD 90
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
+ L I + Q SH D LG++L GI REKIGDI K + +L
Sbjct: 91 YIGLLEIQTD---QEISHRDILGAVLNLGINREKIGDIFTHN-KRFYICATNTMIKFLNL 146
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+L K+ ++S T I +E + + K F I S R+D L S +SR LI N
Sbjct: 147 NLTKIKKFNIS-TSIVEKNIEKDEEKYKPFTGIINSERLDCLVSEMANISRKDAQILIKN 205
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQYL 236
+++N+ V+ ++ +VS+ G GR ++ E + +T+K K ++ I+Y+
Sbjct: 206 KKIKLNYEVVSNTSKSVEENSLVSIRGYGRYRLIEYLGNTKKDKLRIKYIKYI 258
>gi|218133259|ref|ZP_03462063.1| hypothetical protein BACPEC_01124 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992132|gb|EEC58136.1| S4 domain protein [[Bacteroides] pectinophilus ATCC 43243]
Length = 251
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 17/245 (6%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+AR++ ++ L +DFL+ P ++ +A + GG ER G+ E
Sbjct: 15 LARKSYNQGIYLFTDFLSMP---DAAIACDSAPAGYVTLFGGTDGCERVMARFGNAEEFG 71
Query: 61 SDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 116
+ D +V + F +H DFLG+++ GI R+ IGDI+++ +K A
Sbjct: 72 YEEDFPIDVVMIEPLIKKFS-DELTHRDFLGALMNLGIERDVIGDIMIR-DKTAYVFATR 129
Query: 117 ELADYLITSLEKVGNVSVSC----TRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 172
++ Y+ SL+KV + SV C T ++ E R + + +S R+DA+ S +
Sbjct: 130 KIVPYIADSLDKVKHTSVKCRILSTEEITASVSVELERQE---LVISSERLDAVISKLYN 186
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR-IKIGEINSTRKGKFAVE 231
+SRS+ + + + V VN N ++ GD+V+V G G+ + G I T+KG+ V
Sbjct: 187 MSRSQSIEMFRDKKVFVNGRQYENNSGVVKPGDVVAVRGFGKFVYEGIIYETKKGRICVA 246
Query: 232 LIQYL 236
+Y+
Sbjct: 247 ADRYV 251
>gi|315283065|ref|ZP_07871338.1| S4 domain-containing protein, partial [Listeria marthii FSL S4-120]
gi|313613292|gb|EFR87163.1| S4 domain-containing protein [Listeria marthii FSL S4-120]
Length = 163
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Query: 77 FQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSC 136
F +H LG+++ G+ R+ GDI L + Q LV + DYL LEKVG V+V
Sbjct: 4 FTTLTHQKILGTLMSLGMKRDIFGDI-LNKDTEWQLLVESSMKDYLTLQLEKVGKVNVML 62
Query: 137 TRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTK 196
L Y P + +S+R+D + S +SR K L+ G V+VNW TV
Sbjct: 63 EETELANAVYAPVIWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVVAGLVKVNWKTVEN 122
Query: 197 NGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
D++S G GR+K+ T+K K +E I YL
Sbjct: 123 PDFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIE-IGYL 162
>gi|386363047|ref|YP_006072378.1| hypothetical protein SPYALAB49_001227 [Streptococcus pyogenes
Alab49]
gi|350277456|gb|AEQ24824.1| hypothetical protein SPYALAB49_001227 [Streptococcus pyogenes
Alab49]
Length = 263
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 69
++FL P +E M+ +L L D+K Y +E R+ + G+ + SD I A +
Sbjct: 38 TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
I+ F +H LG+++ G+ R GD+ + E G AQ ++ EL DY + ++
Sbjct: 94 EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+ SV I L +++ + +S R+D + + K SR++++ LI +
Sbjct: 152 KIAKTSVKLREINFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKI 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+VN+ K L GD+VS+ G GR + N T+ GK + L
Sbjct: 212 KVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257
>gi|403745293|ref|ZP_10954231.1| hypothetical protein URH17368_1533 [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121521|gb|EJY55814.1| hypothetical protein URH17368_1533 [Alicyclobacillus hesperidum
URH17-3-68]
Length = 256
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSV----GHPEALTSDPDIVA 67
+DFLTP +E +A V GGY AER R+ + HPEA SD DI
Sbjct: 34 TDFLTP---RERWIAESAARHSGLVTSDFGGYTDAERVRMLLMPEDWHPEA--SDYDI-K 87
Query: 68 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L+IT QP H D LGS+LG GI R+ +GDI + +K A + +L L
Sbjct: 88 CLAITALE--QPIRHRDVLGSVLGLGIQRKTVGDIAVFDQKRAYVFATSAMGSFLARELH 145
Query: 128 KVGNVSVSCTRI---PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+VG V + P L PP + S R+DA+ + LSR+ ++
Sbjct: 146 RVGRGVVEVVLLEDPPQLP----PPAYEEQDIFVMSPRIDAIVAQACHLSRANAQEHVAR 201
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 232
G V +N+ +R GDI+SV G GRI++ E + ++R G+ + +
Sbjct: 202 GYVSLNFVEAVAR-DEVRPGDILSVRGFGRIRVVEAVGTSRSGRIRMRI 249
>gi|295094443|emb|CBK83534.1| Uncharacterized conserved protein, contains S4-like domain
[Coprococcus sp. ART55/1]
Length = 259
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 12/247 (4%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A A + +++FL+ ++ LE+L+ GG +R + G+
Sbjct: 14 LANAAFRQNRYTYTNFLSAADMEVFYSNLEQLSFAGYTIFGGRESCDRVMIVFGNEADCG 73
Query: 61 SDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ------GEKGA 110
P + +++ F +H DFLG+++ GI RE +GDI++ A
Sbjct: 74 YAPAFPICTMKVSAVSDKFS-DDLNHRDFLGALMNLGIEREMVGDILVTESTHSGKHNNA 132
Query: 111 QFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAG 170
V +ADY+ +L K+ + +V CT + + + I AS R DA+ +
Sbjct: 133 YIFCVDTVADYIAENLTKIRHTNVKCTFCSTQDTDEIQIKKEPLHIIAASARADAVTATI 192
Query: 171 FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFA 229
LSRS L +N + L+ GD+ S+ G G+ + E S TRKG+
Sbjct: 193 TGLSRSSTSLLFREKKFSLNNRLYENSSYQLKPGDVFSIRGYGKYEFVETGSATRKGRLN 252
Query: 230 VELIQYL 236
+EL++Y+
Sbjct: 253 IELLRYI 259
>gi|50914612|ref|YP_060584.1| RNA binding protein [Streptococcus pyogenes MGAS10394]
gi|50903686|gb|AAT87401.1| RNA binding protein [Streptococcus pyogenes MGAS10394]
Length = 263
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 69
++FL P +E M+ +L L D+K Y +E R+ + G+ + SD I A +
Sbjct: 38 TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
I+ F +H LG+++ G+ R GD+ + E G AQ ++ EL DY + ++
Sbjct: 94 EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+ SV + L +++ + +S R+D + + K SR++++ LI +
Sbjct: 152 KIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKI 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+VN+ K L GD+VS+ G GR + N T+ GK + L
Sbjct: 212 KVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNEVTKHGKQKITL 257
>gi|15675416|ref|NP_269590.1| RNA binding protein [Streptococcus pyogenes SF370]
gi|71911058|ref|YP_282608.1| RNA binding protein [Streptococcus pyogenes MGAS5005]
gi|410680912|ref|YP_006933314.1| hypothetical protein A20_1279c [Streptococcus pyogenes A20]
gi|13622604|gb|AAK34311.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71853840|gb|AAZ51863.1| RNA binding protein [Streptococcus pyogenes MGAS5005]
gi|395454299|dbj|BAM30638.1| RNA binding protein [Streptococcus pyogenes M1 476]
gi|409693501|gb|AFV38361.1| hypothetical protein A20_1279c [Streptococcus pyogenes A20]
Length = 263
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 69
++FL P +E M+ +L L D+K Y +E R+ + G+ + SD I A +
Sbjct: 38 TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
I+ F +H LG+++ G+ R GD+ + E G AQ ++ EL DY + ++
Sbjct: 94 EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+ SV + L +++ + +S R+D + + K SR++++ LI +
Sbjct: 152 KIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKI 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+VN+ K L GD+VS+ G GR + N T+ GK + L
Sbjct: 212 KVNYRVANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257
>gi|440781913|ref|ZP_20960141.1| RNA binding protein [Clostridium pasteurianum DSM 525]
gi|440220631|gb|ELP59838.1| RNA binding protein [Clostridium pasteurianum DSM 525]
Length = 258
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 99/208 (47%), Gaps = 5/208 (2%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP-EALTSDPDIVAAL 69
+ ++F T + E + L L VK G + +ER ++ + + P + +
Sbjct: 35 IYTNEFYTTDICIE-VKKLSTLLGVKIETYGIFENSERNMMAFSYEGDNYCYFP--LKLI 91
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
I F SH D+LG+I+ G+ R K GD+I+ E V E+A Y++ +L +
Sbjct: 92 KIENKSKFNKLSHKDYLGAIMSMGVNRNKFGDLIVI-ENSCYVAVSEEIASYILNNLNSI 150
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
G + + + L + + I +SLR+D L S+ +SR++ V LI+ G+V +
Sbjct: 151 GKCTCNICELELTKSNIPKIKFEELNIIVSSLRLDCLISSICNISRNRAVELINRGNVLL 210
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
N+ T + + G +++ G G+ K+
Sbjct: 211 NYVTEKEKDYNVSFGSTITIRGYGKFKL 238
>gi|325661583|ref|ZP_08150207.1| hypothetical protein HMPREF0490_00941 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331084857|ref|ZP_08333945.1| hypothetical protein HMPREF0987_00248 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325472110|gb|EGC75324.1| hypothetical protein HMPREF0490_00941 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410951|gb|EGG90373.1| hypothetical protein HMPREF0987_00248 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 256
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 102/202 (50%), Gaps = 14/202 (6%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDI---------VAALSITGNFGFQPCSHGDFLGSILG 91
GGY +ER +++ P+AL +I + L + F Q SH D+LG++L
Sbjct: 55 GGYASSER-QIAAFLPDALCLRSEIEDLAYPMGIIHILPRSQKFSEQ-LSHRDYLGALLS 112
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R KIGDII++ E+GA V +L Y+ + ++ V Y
Sbjct: 113 LGIERSKIGDIIVE-EQGAFVFVSDKLLSYVCKEMTQIRRTQVIVCEESFSEFHYTQKYE 171
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K T+ AS+R+D L S F SRS+L LI G V VN ++ NG ++ D++SV G
Sbjct: 172 KITGTV-ASVRLDTLLSLAFSSSRSRLSPLIEAGKVFVNGKLISSNGYNVKEDDVISVRG 230
Query: 212 KGR-IKIGEINSTRKGKFAVEL 232
G+ I I+ T+KG+ VE+
Sbjct: 231 YGKFIYRKVISQTKKGRLLVEI 252
>gi|313884820|ref|ZP_07818572.1| S4 domain protein [Eremococcus coleocola ACS-139-V-Col8]
gi|312619511|gb|EFR30948.1| S4 domain protein [Eremococcus coleocola ACS-139-V-Col8]
Length = 262
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 11/225 (4%)
Query: 14 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAA 68
S FLTP +++M+ + + DVK GG AER R + +P+ + + A
Sbjct: 38 SPFLTP---RQAMIVSQLVGTNEDVKVAFWGGCEGAERKRALI-YPQYYEVNEASFEIQA 93
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
+I F +HG LG+ TG+ R++ GDII G +V + ++ ++++ K
Sbjct: 94 FNINFPLKFGQLTHGRILGTFTSTGVDRDRTGDIITDG-TSWHVIVDASMTEFYMSNITK 152
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
+ NV V I + +S + +SLR+D L S + SR + + I+ G V+
Sbjct: 153 IANVGVHLEPIASDEILQSDESWESVFLVASSLRLDTLLSKVYNFSRQRAKDAIAGGQVK 212
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
VN+ +T+ + DIVS+ GR I ++ T+K + +++
Sbjct: 213 VNFIEMTRPDVVIGVEDIVSLRHYGRFWIKQVQGMTKKDNYKLQV 257
>gi|294501007|ref|YP_003564707.1| RNA binding protein [Bacillus megaterium QM B1551]
gi|294350944|gb|ADE71273.1| RNA binding protein [Bacillus megaterium QM B1551]
Length = 257
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 8 RREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 61
+ +VLH +DFL P + + +V+ GG P AER R ++ +P+
Sbjct: 22 KEDVLHQYSPKLTDFLDPREQQIVTAIVGTEGEVQVSFDGGQPFAERKR-ALLYPDYYVP 80
Query: 62 DPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELA 119
+ + N+ F H LGS + G+ R K GDI++ G+ Q + E++
Sbjct: 81 ESEDFQLHMYELNYPKKFVTIEHPQVLGSAMSLGLRRSKFGDILVAGD-DIQLVAAEEIS 139
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y+ +L +G VS + I L +S+R+D L S LSR K+
Sbjct: 140 SYIEMNLTSIGKAKVSLSSIQREQLHVVKEELIEHVYTVSSMRLDVLLSTIHNLSRQKVQ 199
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
I+NG V+VN+ + + GDI+S+ G GR +I + T+K K+ +
Sbjct: 200 PFIANGAVKVNFKVIEQPSFECHEGDILSLRGHGRSRIVSLEGKTKKEKWRI 251
>gi|450000066|ref|ZP_21824911.1| hypothetical protein SMU56_03254 [Streptococcus mutans N29]
gi|450078231|ref|ZP_21850915.1| hypothetical protein SMU75_07403 [Streptococcus mutans N3209]
gi|449186310|gb|EMB88149.1| hypothetical protein SMU56_03254 [Streptococcus mutans N29]
gi|449210280|gb|EMC10750.1| hypothetical protein SMU75_07403 [Streptococcus mutans N3209]
Length = 262
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNVQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + +A KLSR K LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|407477643|ref|YP_006791520.1| S4 domain-containing protein [Exiguobacterium antarcticum B7]
gi|407061722|gb|AFS70912.1| S4 domain protein [Exiguobacterium antarcticum B7]
Length = 257
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 20/228 (8%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVA-QGGYPQAERCR--LSVGHPEALTSDPDIVAALS 70
+DFL P +E + E + A+ +GG+ AER R ++ + + +D DI A
Sbjct: 34 TDFLDP---REQQITRELVGTKCALFFEGGFEGAERQRALIAPDYYDLDANDFDI-AIYR 89
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F SH G++L G+ R K GD+++Q ++ QF V E++ Y+ ++E+ G
Sbjct: 90 IHYPTKFVELSHRQVTGTLLNVGLKRGKFGDVVIQ-DQVVQFAVAKEVSSYIEANVERAG 148
Query: 131 NVSVSCTRIPLLALEYEPP-RTKSFKTIE-----ASLRVDALASAGFKLSRSKLVNLISN 184
T+I L +++E +TK + E +SLR D + S SR K +LI
Sbjct: 149 K-----TKIRLSVVDFEEQLKTKEQEWQEELGFVSSLRFDTVVSEILGFSRQKAQSLIKQ 203
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVE 231
G+ +VN+ V L GD++S+ G GR+K I + ST++ + ++
Sbjct: 204 GESKVNYKIVEDPSFLLEEGDLLSLRGTGRVKLIAVLGSTKRDRIKLQ 251
>gi|419778746|ref|ZP_14304633.1| S4 domain protein [Streptococcus oralis SK10]
gi|383187168|gb|EIC79627.1| S4 domain protein [Streptococcus oralis SK10]
Length = 263
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALTSDPD 64
R E ++ LTP + L LA +A G + E R+ + +P+ +P+
Sbjct: 28 RVEDTYAAVLTPFINPHQEQILRVLAGTYGLACQSSGDFLPTESVRVLL-YPDYF--EPE 84
Query: 65 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 119
I +A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 85 ISDFEIALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ K+G + VS P + + + +S R+DAL S+ KLSR++
Sbjct: 144 PLFQGGIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTS 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
LI V+VN+ V K+ + GD++SV GR+K+ E N T+K K
Sbjct: 204 QLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVEDNGQTKKDK 252
>gi|332522681|ref|ZP_08398933.1| S4 domain protein [Streptococcus porcinus str. Jelinkova 176]
gi|332313945|gb|EGJ26930.1| S4 domain protein [Streptococcus porcinus str. Jelinkova 176]
Length = 262
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 110/235 (46%), Gaps = 5/235 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+ RR ++FL P + E + L +D++ + + E R+ +
Sbjct: 24 IIRRVEDSYSFYLTEFLNPRQV-EILKILVASSDLQCFSSSDFYHTEYGRVIIAPDYYHL 82
Query: 61 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPEL 118
++ D +A + I+ N F H LG+ + GI R +GDI++ AQ + +
Sbjct: 83 NECDFALAIVDISYNAKFNTIKHAQILGAFIHELGIQRSLLGDILV-APGHAQVMTTKSM 141
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
Y IT++ K+ SV+ L L K + + +S R+D L + FKLSRS+
Sbjct: 142 LSYAITNISKIARASVNLKEGSLEDLIQANVDEKHLELLLSSFRLDTLIANVFKLSRSQA 201
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+ L+ + V++N+ K L GD++SV G GR ++ + N T+ GK+ + +
Sbjct: 202 IKLVESEKVKINYRVSRKASDLLVIGDLISVRGFGRFQLLQDNGLTKNGKYKLTI 256
>gi|449887873|ref|ZP_21787103.1| hypothetical protein SMU104_07220 [Streptococcus mutans SA41]
gi|449893788|ref|ZP_21788934.1| hypothetical protein SMU105_06710 [Streptococcus mutans SF12]
gi|449916113|ref|ZP_21796665.1| hypothetical protein SMU20_06491 [Streptococcus mutans 15JP3]
gi|449991914|ref|ZP_21822090.1| hypothetical protein SMU53_08196 [Streptococcus mutans NVAB]
gi|450041211|ref|ZP_21837265.1| hypothetical protein SMU63_07095 [Streptococcus mutans T4]
gi|450117360|ref|ZP_21864966.1| hypothetical protein SMU83_08453 [Streptococcus mutans ST1]
gi|449155604|gb|EMB59109.1| hypothetical protein SMU20_06491 [Streptococcus mutans 15JP3]
gi|449180385|gb|EMB82543.1| hypothetical protein SMU53_08196 [Streptococcus mutans NVAB]
gi|449197940|gb|EMB99076.1| hypothetical protein SMU63_07095 [Streptococcus mutans T4]
gi|449226359|gb|EMC25901.1| hypothetical protein SMU83_08453 [Streptococcus mutans ST1]
gi|449252005|gb|EMC49998.1| hypothetical protein SMU104_07220 [Streptococcus mutans SA41]
gi|449255693|gb|EMC53538.1| hypothetical protein SMU105_06710 [Streptococcus mutans SF12]
Length = 262
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + +A KLSR K LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|295105662|emb|CBL03206.1| Uncharacterized conserved protein, contains S4-like domain
[Faecalibacterium prausnitzii SL3/3]
Length = 272
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 95/200 (47%), Gaps = 6/200 (3%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 100
GG+P+AER L + + P L G +H D+LGS++G + RE +G
Sbjct: 74 GGWPEAERRVLCLEPEYSYGECPVRCVQLQCRALPGAALPAHKDYLGSLMGLALKREALG 133
Query: 101 DIILQGE-KGAQFLVVPELADYLIT-SLEKVGNVSVSCTRI--PLLALEYEPPRTKSFKT 156
DI+L + G ++ E A LI L + G + VS TR+ P + P +
Sbjct: 134 DILLPADAPGTAYVFALEPAAKLICRELCQAGRIEVS-TRLLEPEEIPAFPAPERQLLTA 192
Query: 157 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
+SLR+DA+ SA +SR LI G V +N V K + D+ +V GKGR +
Sbjct: 193 TVSSLRLDAVLSAMLHVSRGTAAELIEAGRVEINHLPVEKPHAPVYEQDVFTVRGKGRFR 252
Query: 217 IGEI-NSTRKGKFAVELIQY 235
+ + ++K + +E QY
Sbjct: 253 LTALPGKSKKDRSIIEFFQY 272
>gi|290580942|ref|YP_003485334.1| hypothetical protein SmuNN2025_1416 [Streptococcus mutans NN2025]
gi|449875971|ref|ZP_21782531.1| hypothetical protein SMU102_03663 [Streptococcus mutans S1B]
gi|449883564|ref|ZP_21785234.1| hypothetical protein SMU103_07295 [Streptococcus mutans SA38]
gi|449925345|ref|ZP_21800206.1| hypothetical protein SMU22_04895 [Streptococcus mutans 4SM1]
gi|449947988|ref|ZP_21807749.1| hypothetical protein SMU33_03663 [Streptococcus mutans 11SSST2]
gi|450028374|ref|ZP_21832112.1| hypothetical protein SMU61_00635 [Streptococcus mutans G123]
gi|450033877|ref|ZP_21834028.1| hypothetical protein SMU62_00445 [Streptococcus mutans M21]
gi|450068048|ref|ZP_21846972.1| hypothetical protein SMU72_07237 [Streptococcus mutans NLML9]
gi|450092756|ref|ZP_21856228.1| hypothetical protein SMU78_04303 [Streptococcus mutans W6]
gi|450109968|ref|ZP_21861828.1| hypothetical protein SMU82_02336 [Streptococcus mutans SM6]
gi|450120006|ref|ZP_21865434.1| hypothetical protein SMU85_00854 [Streptococcus mutans ST6]
gi|450149389|ref|ZP_21876096.1| hypothetical protein SMU92_05620 [Streptococcus mutans 14D]
gi|450165915|ref|ZP_21882085.1| hypothetical protein SMU95_06504 [Streptococcus mutans B]
gi|254997841|dbj|BAH88442.1| hypothetical protein [Streptococcus mutans NN2025]
gi|449161609|gb|EMB64790.1| hypothetical protein SMU22_04895 [Streptococcus mutans 4SM1]
gi|449167996|gb|EMB70840.1| hypothetical protein SMU33_03663 [Streptococcus mutans 11SSST2]
gi|449195787|gb|EMB97096.1| hypothetical protein SMU61_00635 [Streptococcus mutans G123]
gi|449196952|gb|EMB98183.1| hypothetical protein SMU62_00445 [Streptococcus mutans M21]
gi|449207736|gb|EMC08404.1| hypothetical protein SMU72_07237 [Streptococcus mutans NLML9]
gi|449218004|gb|EMC18030.1| hypothetical protein SMU78_04303 [Streptococcus mutans W6]
gi|449225723|gb|EMC25309.1| hypothetical protein SMU82_02336 [Streptococcus mutans SM6]
gi|449230795|gb|EMC30043.1| hypothetical protein SMU85_00854 [Streptococcus mutans ST6]
gi|449234497|gb|EMC33502.1| hypothetical protein SMU92_05620 [Streptococcus mutans 14D]
gi|449240265|gb|EMC38952.1| hypothetical protein SMU95_06504 [Streptococcus mutans B]
gi|449249644|gb|EMC47751.1| hypothetical protein SMU103_07295 [Streptococcus mutans SA38]
gi|449253359|gb|EMC51317.1| hypothetical protein SMU102_03663 [Streptococcus mutans S1B]
Length = 262
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + +A KLSR K LI + V
Sbjct: 151 KIGEAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|296110598|ref|YP_003620979.1| cell division protein () [Leuconostoc kimchii IMSNU 11154]
gi|339490310|ref|YP_004704815.1| cell division protein [Leuconostoc sp. C2]
gi|295832129|gb|ADG40010.1| cell division protein (putative) [Leuconostoc kimchii IMSNU 11154]
gi|338851982|gb|AEJ30192.1| cell division protein (putative) [Leuconostoc sp. C2]
Length = 264
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 16/221 (7%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSDPDIVAALSITG 73
FL P + + D+ G P AE R ++ E SD ++ A L I
Sbjct: 41 FLNPREQYILQTCVNRAKDLVVQFNGVVPHAESQRAFIAPSFYEIELSDFEL-ALLEIKY 99
Query: 74 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVS 133
F H LGS + GI R IGDI L + Q +V ++ Y+ ++EK+G V
Sbjct: 100 PVKFTELHHATILGSFMSAGIERAVIGDI-LSHQDQWQIVVDAKMVTYIQQTVEKIGRV- 157
Query: 134 VSCTRIPLLA--LEYEPPRTKS----FKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
RI L+ L++ P + + +SLR+D SA F +SR +L+ V
Sbjct: 158 ----RITLMEQNLDHIPVTDRDDWDEVFLLLSSLRIDTAVSAAFDISRRMAKSLVEQEQV 213
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 227
R+NW T+ K + GD+VSV GR+++ I+ T+K K
Sbjct: 214 RINWATMLKPDHVIAVGDMVSVRHYGRLQLVMIDGLTKKDK 254
>gi|449898457|ref|ZP_21790629.1| hypothetical protein SMU107_05560 [Streptococcus mutans R221]
gi|449904579|ref|ZP_21792735.1| hypothetical protein SMU108_06161 [Streptococcus mutans M230]
gi|449928895|ref|ZP_21801402.1| hypothetical protein SMU26_01277 [Streptococcus mutans 3SN1]
gi|449935360|ref|ZP_21803321.1| hypothetical protein SMU29_00680 [Streptococcus mutans 2ST1]
gi|449975429|ref|ZP_21815779.1| hypothetical protein SMU44_05296 [Streptococcus mutans 11VS1]
gi|450011801|ref|ZP_21829338.1| hypothetical protein SMU58_06488 [Streptococcus mutans A19]
gi|450024075|ref|ZP_21831001.1| hypothetical protein SMU60_05017 [Streptococcus mutans U138]
gi|450125353|ref|ZP_21867610.1| hypothetical protein SMU86_02118 [Streptococcus mutans U2A]
gi|450152968|ref|ZP_21876931.1| hypothetical protein SMU93_00028 [Streptococcus mutans 21]
gi|449164967|gb|EMB68001.1| hypothetical protein SMU26_01277 [Streptococcus mutans 3SN1]
gi|449166646|gb|EMB69573.1| hypothetical protein SMU29_00680 [Streptococcus mutans 2ST1]
gi|449176938|gb|EMB79262.1| hypothetical protein SMU44_05296 [Streptococcus mutans 11VS1]
gi|449189103|gb|EMB90781.1| hypothetical protein SMU58_06488 [Streptococcus mutans A19]
gi|449192405|gb|EMB93827.1| hypothetical protein SMU60_05017 [Streptococcus mutans U138]
gi|449232536|gb|EMC31644.1| hypothetical protein SMU86_02118 [Streptococcus mutans U2A]
gi|449239439|gb|EMC38161.1| hypothetical protein SMU93_00028 [Streptococcus mutans 21]
gi|449259108|gb|EMC56652.1| hypothetical protein SMU108_06161 [Streptococcus mutans M230]
gi|449259791|gb|EMC57310.1| hypothetical protein SMU107_05560 [Streptococcus mutans R221]
Length = 262
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + +A KLSR K LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|377557353|ref|ZP_09787003.1| hypothetical protein PS3_20614 [Lactobacillus gastricus PS3]
gi|376165759|gb|EHS84700.1| hypothetical protein PS3_20614 [Lactobacillus gastricus PS3]
Length = 261
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 2/194 (1%)
Query: 35 VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTG 93
+K GG+ AE R + D D + L+I F H +GS+L +G
Sbjct: 58 IKVAFNGGFANAEMQRALIFPDYYQPQDSDFELQLLTIDYPRKFAELHHRQIMGSLLSSG 117
Query: 94 IAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKS 153
I R GDI++ ++ Q +V ++ Y+ + +VG + +S + A+ +
Sbjct: 118 IDRNVFGDILVH-DQDWQVIVDTKMVTYIQGQVTQVGKIHISFLPQAMSAVIQSQSDWEE 176
Query: 154 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 213
T SLR+DA+ + F SR++ +I +G VRVNW V++ T+ D +SV G
Sbjct: 177 LSTTVVSLRLDAIVATAFNYSRNRAKLVIEHGLVRVNWQEVSRPDFTVAIFDQLSVRHAG 236
Query: 214 RIKIGEINSTRKGK 227
R+++ +N K +
Sbjct: 237 RVQLQAVNGYNKKQ 250
>gi|21910704|ref|NP_664972.1| RNA binding protein [Streptococcus pyogenes MGAS315]
gi|28895606|ref|NP_801956.1| RNA binding protein [Streptococcus pyogenes SSI-1]
gi|56808756|ref|ZP_00366473.1| COG2302: Uncharacterized conserved protein, contains S4-like domain
[Streptococcus pyogenes M49 591]
gi|94988870|ref|YP_596971.1| RNA binding protein [Streptococcus pyogenes MGAS9429]
gi|94992760|ref|YP_600859.1| RNA binding protein [Streptococcus pyogenes MGAS2096]
gi|383480270|ref|YP_005389164.1| hypothetical protein MGAS15252_1129 [Streptococcus pyogenes
MGAS15252]
gi|383494252|ref|YP_005411928.1| hypothetical protein MGAS1882_1190 [Streptococcus pyogenes
MGAS1882]
gi|417856571|ref|ZP_12501630.1| hypothetical protein SPYOHK_03505 [Streptococcus pyogenes HKU
QMH11M0907901]
gi|21904907|gb|AAM79775.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28810855|dbj|BAC63789.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|94542378|gb|ABF32427.1| RNA binding protein [Streptococcus pyogenes MGAS9429]
gi|94544278|gb|ABF34326.1| RNA binding protein [Streptococcus pyogenes MGAS10270]
gi|94546268|gb|ABF36315.1| RNA binding protein [Streptococcus pyogenes MGAS2096]
gi|378928260|gb|AFC66466.1| hypothetical protein MGAS15252_1129 [Streptococcus pyogenes
MGAS15252]
gi|378929979|gb|AFC68396.1| hypothetical protein MGAS1882_1190 [Streptococcus pyogenes
MGAS1882]
gi|387933526|gb|EIK41639.1| hypothetical protein SPYOHK_03505 [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 263
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 69
++FL P +E M+ +L L D+K Y +E R+ + G+ + SD I A +
Sbjct: 38 TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
I+ F +H LG+++ G+ R GD+ + E G AQ ++ EL DY + ++
Sbjct: 94 EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+ SV + L +++ + +S R+D + + K SR++++ LI +
Sbjct: 152 KIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKI 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+VN+ K L GD+VS+ G GR + N T+ GK + L
Sbjct: 212 KVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257
>gi|449941901|ref|ZP_21805728.1| hypothetical protein SMU3_03044 [Streptococcus mutans 11A1]
gi|449969794|ref|ZP_21813436.1| hypothetical protein SMU41_03212 [Streptococcus mutans 2VS1]
gi|450056574|ref|ZP_21842123.1| hypothetical protein SMU69_02022 [Streptococcus mutans NLML4]
gi|449151458|gb|EMB55192.1| hypothetical protein SMU3_03044 [Streptococcus mutans 11A1]
gi|449173906|gb|EMB76438.1| hypothetical protein SMU41_03212 [Streptococcus mutans 2VS1]
gi|449206697|gb|EMC07393.1| hypothetical protein SMU69_02022 [Streptococcus mutans NLML4]
Length = 263
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 38 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 92
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 93 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + +A KLSR K LI + V
Sbjct: 152 KIGEAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 212 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 250
>gi|401682237|ref|ZP_10814131.1| S4 domain protein [Streptococcus sp. AS14]
gi|400184673|gb|EJO18911.1| S4 domain protein [Streptococcus sp. AS14]
Length = 261
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 8/209 (3%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGS 88
K DV+ A Y +E R+ V P L D ++ L I+ F H +G+
Sbjct: 52 KQYDVQVFASSDYFPSELARVLVA-PSYYQLNMDDFELSLLEISYASKFYKIIHSQIMGT 110
Query: 89 ILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 147
+L GI R GDI++ G++ AQ V LA Y I + KV + V + E
Sbjct: 111 LLNHLGIERRTFGDILVVGDR-AQLFVDKRLAQYFIDHVTKVAKMPVKLKEVSFAEQLKE 169
Query: 148 PPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 207
++ + + + +SLR+D L ++ FKLSRS+ LIS V++N+ + D++
Sbjct: 170 QKQSVTREILASSLRLDKLVASTFKLSRSQAAQLISGKHVKMNYAVNDNPSQQVGLEDLI 229
Query: 208 SVSGKGRIKIGEINSTRKG---KFAVELI 233
SV GR K+ N K K VEL+
Sbjct: 230 SVRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|450100013|ref|ZP_21858585.1| hypothetical protein SMU80_06218 [Streptococcus mutans SF1]
gi|450169794|ref|ZP_21883172.1| hypothetical protein SMU97_02282 [Streptococcus mutans SM4]
gi|449220573|gb|EMC20426.1| hypothetical protein SMU80_06218 [Streptococcus mutans SF1]
gi|449246651|gb|EMC44949.1| hypothetical protein SMU97_02282 [Streptococcus mutans SM4]
Length = 262
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + +A KLSR K LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|300854254|ref|YP_003779238.1| RNA-binding protein [Clostridium ljungdahlii DSM 13528]
gi|300434369|gb|ADK14136.1| putative RNA binding protein [Clostridium ljungdahlii DSM 13528]
Length = 257
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 5/218 (2%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
V S F TP V ++ L+K + + G + AER +L + + P + +
Sbjct: 35 VYTSTFYTPNVW-NTLENLKKEIGLNICSCGIFEDAER-KLIAFSKFDIRNYP--IKLME 90
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F H D+LG+++ G+ REK GD+IL+ +K V +++DY+ +L VG
Sbjct: 91 IKCKSKFVKLQHKDYLGALMALGLKREKFGDLILKEDKQCYLAVCEDVSDYIEMNLNSVG 150
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
S + + + E K+ +SLR+D L S+ +SR+K +I G V ++
Sbjct: 151 KSSCKANVLDISSAEIPLYNFKTSVLNVSSLRIDCLVSSLCNVSRNKSQEMIKRGKVLLD 210
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGK 227
+ T+ ++ I++V G G+ KI GE T G+
Sbjct: 211 YLPETRKDKSIEDNCIITVRGCGKFKIVGETGWTGSGR 248
>gi|450175242|ref|ZP_21885033.1| hypothetical protein SMU98_01733 [Streptococcus mutans SM1]
gi|449247104|gb|EMC45392.1| hypothetical protein SMU98_01733 [Streptococcus mutans SM1]
Length = 262
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP K + +S+R+D + +A KLSR + LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRQANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|71903846|ref|YP_280649.1| RNA binding protein [Streptococcus pyogenes MGAS6180]
gi|71802941|gb|AAX72294.1| RNA binding protein [Streptococcus pyogenes MGAS6180]
Length = 263
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 69
++FL P +E M+ +L L D+K Y +E R+ + G+ + SD I A +
Sbjct: 38 TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
I+ F +H LG+++ G+ R GD+ + E G AQ ++ EL DY + ++
Sbjct: 94 EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+ SV + L +++ + +S R+D + + K SR++++ LI +
Sbjct: 152 KIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKI 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+VN+ K L GD+VS+ G GR + N T+ GK + L
Sbjct: 212 KVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257
>gi|224476293|ref|YP_002633899.1| putative RNA-binding protein [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420900|emb|CAL27714.1| putative RNA-binding protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 203
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 99/199 (49%), Gaps = 6/199 (3%)
Query: 35 VKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
+K QGG +ER R + PE + D D + L + F H + LG+++
Sbjct: 1 MKLEFQGGNSDSERKRAMIS-PEYFSPKDEDFELVLLELEYPEKFATIDHRNVLGTLMSL 59
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
I R+++GDI++ G+K QF++ + Y++ L+++ NV V +P+ +
Sbjct: 60 SIERDQLGDIVV-GDK-IQFILTKNIESYIMLELKRIKNVPVKLHEVPMQDMIQSKENWT 117
Query: 153 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
+ + ++LR+D + + SRS I ++VN T + + L +GD++S+ G
Sbjct: 118 THQATVSALRLDVVLKEMIRKSRSIAKQYIEKKLIKVNHTIIERPDFQLESGDLLSIQGH 177
Query: 213 GRIKIGEIN-STRKGKFAV 230
GR ++ EI T+K K +
Sbjct: 178 GRARMTEIGPKTKKDKLRI 196
>gi|358054991|ref|ZP_09147519.1| hypothetical protein SS7213T_11255 [Staphylococcus simiae CCM 7213]
gi|357256725|gb|EHJ07057.1| hypothetical protein SS7213T_11255 [Staphylococcus simiae CCM 7213]
Length = 259
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILG 91
D+ GG P AER R + PE T+ D + I N+ F H LG+++
Sbjct: 57 DLNVTFFGG-PNAERQRAIIA-PEYYTATDDDFDLVLIQVNYPDKFVTLKHQHILGTLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDII+ GE+ QF++ L +++ L+++ +V IP +
Sbjct: 115 LGIDRQQVGDIIV-GEQ-IQFVLTSRLQSFIMLELQRIKGATVKLNTIPFSDMIQSKEDW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + SR+ LI V+VN TTV + L+ D++S+ G
Sbjct: 173 KLSSATVSSLRLDVILKEMIHKSRTIAKQLIDKKRVKVNHTTVDSSDFQLQMNDLISIQG 232
Query: 212 KGRIKIGEI-NSTRKGK 227
GR +I + T+K K
Sbjct: 233 YGRAQITNLGGKTKKDK 249
>gi|94994748|ref|YP_602846.1| RNA binding protein [Streptococcus pyogenes MGAS10750]
gi|94548256|gb|ABF38302.1| RNA binding protein [Streptococcus pyogenes MGAS10750]
Length = 263
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 69
++FL P +E M+ +L L D+K Y +E R+ + G+ + SD I A +
Sbjct: 38 TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
I+ F +H LG+++ G+ R GD+ + E G AQ ++ EL DY + ++
Sbjct: 94 EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+ SV + L ++ + +S R+D + + K SR++++ LI +
Sbjct: 152 KIAKTSVKLREVNFDQLIRSIDNNQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKI 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+VN+ K L GD+VS+ G GR + N T+ GK + L
Sbjct: 212 KVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257
>gi|422846174|ref|ZP_16892857.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK72]
gi|325688225|gb|EGD30244.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK72]
Length = 261
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 6/208 (2%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 89
K DV+ A Y +E ++ V L D ++ L I+ F SH +G++
Sbjct: 52 KQYDVQVFASSDYFPSELAKVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTL 111
Query: 90 LGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 148
L GI R GDI++ G+ AQ V LA Y I + K+ + V + E
Sbjct: 112 LNQLGIERRTFGDILVVGD-CAQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQ 170
Query: 149 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVS 208
+ + + + +SLR+D L ++ FKLSRS+ LIS V++N+ + D++S
Sbjct: 171 KQAATREILASSLRLDKLVASTFKLSRSQATQLISGKHVKMNYAVNDNPSQQVGLEDLIS 230
Query: 209 VSGKGRIKIGEINSTRKG---KFAVELI 233
V GR K+ N K K VEL+
Sbjct: 231 VRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|450005156|ref|ZP_21826540.1| hypothetical protein SMU57_01777 [Streptococcus mutans NMT4863]
gi|449189020|gb|EMB90704.1| hypothetical protein SMU57_01777 [Streptococcus mutans NMT4863]
Length = 262
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP K + +S+R+D + + KLSR K LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAVVLKLSRRKANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|406587577|ref|ZP_11062446.1| hypothetical protein GMD1S_06737 [Streptococcus sp. GMD1S]
gi|404472943|gb|EKA17325.1| hypothetical protein GMD1S_06737 [Streptococcus sp. GMD1S]
Length = 263
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 13/229 (5%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 64
R E ++ LTP + L LA + + G + E R+ + +P+ +P+
Sbjct: 28 RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84
Query: 65 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 119
I +A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 85 ISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ K+G + VS P + + + +S R+DAL S+G KLSR++
Sbjct: 144 PLFQDGIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSGLKLSRNQAS 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
LI V+VN+ V K+ + GD++SV GR+K+ + N T+K K
Sbjct: 204 QLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 252
>gi|429765555|ref|ZP_19297840.1| S4 domain protein [Clostridium celatum DSM 1785]
gi|429186006|gb|EKY26969.1| S4 domain protein [Clostridium celatum DSM 1785]
Length = 255
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 39 AQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
A+ G + +R LS + + S P L I+ + F +H D+LG+++ G+ R+K
Sbjct: 63 AECGLDEGDRKILSFNN---IYSIPYPYKILKISNSSKFNKLTHRDYLGALMALGLERDK 119
Query: 99 IGDIILQGEKGAQFLVVP---ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 155
+GD+ + + + +VP ELADY+ T L+ V V I E + P+ +FK
Sbjct: 120 LGDLRVNDD----YAIVPVYEELADYICTELKLVNKAPVKVCEI----FEEDLPKA-NFK 170
Query: 156 ---TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
I SLR+D S +SR K + LI V V++ V ++ G +++SG
Sbjct: 171 EETIIIPSLRLDNFVSKLSNVSRGKAITLIDTNKVLVDYAKVKGKSQEIKEGQRITISGT 230
Query: 213 GRIKIGEI-NSTRKGKFAVELIQYL 236
G+ +G I +T+ G++ + + +Y+
Sbjct: 231 GKFLVGNIMGNTKSGRYKINIKKYI 255
>gi|365904414|ref|ZP_09442173.1| hypothetical protein LverK3_02439 [Lactobacillus versmoldensis KCTC
3814]
Length = 266
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 4/203 (1%)
Query: 29 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAAL-SITGNFGFQPCSHGDFLG 87
+ K D+ GGY AER R + + D L + F HG LG
Sbjct: 56 VNKYDDLFVHYYGGYEGAERVRGMIAPDYFVPQQEDFHEQLFEVRYPEKFANLHHGQILG 115
Query: 88 SILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE 147
S+ G GI R+ GDII G++ QF +++YL ++K+G + + +
Sbjct: 116 SLTGAGIDRDHFGDIITDGKR-WQFFAFDNISNYLEEQVDKIGPFKIHLIKKDIQNDLLM 174
Query: 148 PPRTKSFKTIEA-SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 206
P +TI SLR+D L + + +SR++ L+ +G V++NW + + D
Sbjct: 175 PIDDSEDETINVQSLRIDTLIAEVYGMSRTQSKALVEHGRVQLNWVPQRNASSFVTLYDT 234
Query: 207 VSVSGKGRIKIGEI-NSTRKGKF 228
+SV G GRI + I +R K+
Sbjct: 235 ISVRGYGRILVRNIMGKSRNNKY 257
>gi|406670577|ref|ZP_11077822.1| hypothetical protein HMPREF9706_00082 [Facklamia hominis CCUG
36813]
gi|405582093|gb|EKB56099.1| hypothetical protein HMPREF9706_00082 [Facklamia hominis CCUG
36813]
Length = 261
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 5/220 (2%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGN 74
FLTP + + + + D+K GG +E R + + D ++ L I
Sbjct: 38 FLTPRQCRIVLQLVNRQDDIKVKFYGGKIGSESQRALIYPNYYQVQEDDFGLSYLQIDYP 97
Query: 75 FGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV 134
F SH LG+ L GI R ++GDI G+ Q +V ++ DY +L K+ + +
Sbjct: 98 IKFGDLSHSKILGAFLALGIDRNRLGDIFTNGQVW-QVVVDQKMLDYFKQNLVKIDHFGI 156
Query: 135 SCTRIPLLALEYEPPRTKSFKTI-EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTT 193
+ L +P F+ I +SLR+D+L S+ F +SR + ++I +G V+VN+
Sbjct: 157 KLKELDSSQL-VDPIDEWEFEVITSSSLRLDSLISSIFHISRQRSKDMIKSGLVKVNFVM 215
Query: 194 VTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVEL 232
+ + L+ D+VSV GR ++ ++ T+K + +++
Sbjct: 216 AERGDSLLQEDDLVSVRRFGRFQLKQLMGMTKKNNYRMQI 255
>gi|402574193|ref|YP_006623536.1| hypothetical protein Desmer_3829 [Desulfosporosinus meridiei DSM
13257]
gi|402255390|gb|AFQ45665.1| hypothetical protein Desmer_3829 [Desulfosporosinus meridiei DSM
13257]
Length = 265
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 14/217 (6%)
Query: 24 ESMMALEKLADVKAVAQGGYPQAERCRLSVGHP-EALTSDPDIVAALSITGNFGFQPCSH 82
ES++ E LA +A+GG P AER R+ +G + + + ++ LS+ H
Sbjct: 53 ESVLRKEHLA---YLAEGGLPDAERVRIIMGAKGDIMKPEQAEISLLSVRATNLRAKLEH 109
Query: 83 GDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG----NVSVSCTR 138
LGS++G G+ R+ GDI G+ G E+ L+ + G NVS+S
Sbjct: 110 HQILGSLMGLGLRRDLFGDI-QAGQSGFYVATTLEIVPVLLNQWTEAGREKINVSIS-EG 167
Query: 139 IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNG 198
IP L P + + S R+DA+ + F +SRS I+ G V+ + VTK
Sbjct: 168 IPDLL----PGLGEERRITVNSSRLDAVIANAFGVSRSMAQEWITQGKVKKSGLGVTKVE 223
Query: 199 TTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQY 235
T ++ D+VS G GR+K+ E ++TRK K A +++ +
Sbjct: 224 TEVQPNDLVSCRGHGRVKLLECSNTRKDKIAWQILLF 260
>gi|450071266|ref|ZP_21848058.1| hypothetical protein SMU74_02732 [Streptococcus mutans M2A]
gi|450107178|ref|ZP_21860918.1| hypothetical protein SMU81_07445 [Streptococcus mutans SF14]
gi|450160934|ref|ZP_21880262.1| hypothetical protein SMU94_06913 [Streptococcus mutans 66-2A]
gi|449212548|gb|EMC12909.1| hypothetical protein SMU74_02732 [Streptococcus mutans M2A]
gi|449222346|gb|EMC22075.1| hypothetical protein SMU81_07445 [Streptococcus mutans SF14]
gi|449239396|gb|EMC38119.1| hypothetical protein SMU94_06913 [Streptococcus mutans 66-2A]
Length = 262
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + +A KLSR + LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQIISQSHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|414157071|ref|ZP_11413371.1| hypothetical protein HMPREF9186_01791 [Streptococcus sp. F0442]
gi|410868387|gb|EKS16352.1| hypothetical protein HMPREF9186_01791 [Streptococcus sp. F0442]
Length = 263
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPE 57
++ R R V + FL P + L +A ++ A + E ++ VG P+
Sbjct: 24 LSERVIERYSVEVTGFLNP----HQVAILRNVASSYQLQVFASSDEQKMEYAKVIVG-PD 78
Query: 58 ALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLV 114
DP+ +A L + F +H LG+I+ G+ R+ GDI L + Q V
Sbjct: 79 YYQLDPNDFDLALLEMVYASKFHHLTHSQVLGTIVHQLGVERKSFGDI-LTSDGKIQVFV 137
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPL---LALEYEPPRTKSFKTIEASLRVDALASAGF 171
Y + ++K+ V V +PL L +E + ++ + +S R+D + +A F
Sbjct: 138 ERRFVPYFMDHIQKISRVPVKLKEVPLSQQLVIEED---SQHRDILVSSFRLDKVIAATF 194
Query: 172 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAV 230
KLSRS+ L+S+G V+VN+ T T + + D+VSV GR+K + E ++ GK+ V
Sbjct: 195 KLSRSQASQLVSSGLVKVNYATTTNSSYAVDLNDLVSVRRFGRLKMVSENGISKSGKYKV 254
>gi|450082571|ref|ZP_21852414.1| hypothetical protein SMU76_05264 [Streptococcus mutans N66]
gi|449214289|gb|EMC14574.1| hypothetical protein SMU76_05264 [Streptococcus mutans N66]
Length = 262
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFIFSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + +A KLSR K LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|160945087|ref|ZP_02092313.1| hypothetical protein FAEPRAM212_02606 [Faecalibacterium prausnitzii
M21/2]
gi|158442818|gb|EDP19823.1| S4 domain protein [Faecalibacterium prausnitzii M21/2]
Length = 272
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 6/200 (3%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 100
GG+P+AER L + + P L G +H D+LGS++G + RE +G
Sbjct: 74 GGWPEAERRVLCLEPEYSYGECPVRCVQLQCRALPGAALPAHKDYLGSLMGLALKREALG 133
Query: 101 DIILQGE-KGAQFLVVPELADYLIT-SLEKVGNVSVSCTRI--PLLALEYEPPRTKSFKT 156
DI+L + G ++ E A LI L + G VS TR+ P + P +
Sbjct: 134 DILLPADAPGTAYVFALEPAAKLICRELCQAGRTEVS-TRLLEPEEIPAFPAPERQLLTA 192
Query: 157 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
+SLR+DA+ SA +SR LI G V +N V K + D+ +V GKGR +
Sbjct: 193 TVSSLRLDAVLSAMLHVSRGTAAELIEAGRVEINHLPVEKPHAPVYEQDVFTVRGKGRFR 252
Query: 217 IGEI-NSTRKGKFAVELIQY 235
+ + ++K + +E QY
Sbjct: 253 LTALPGKSKKDRSIIEFFQY 272
>gi|433463299|ref|ZP_20420858.1| hypothetical protein D479_16904 [Halobacillus sp. BAB-2008]
gi|432187809|gb|ELK45066.1| hypothetical protein D479_16904 [Halobacillus sp. BAB-2008]
Length = 263
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 11/224 (4%)
Query: 14 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
+DFL P ++ M+ L D+ +GG ER R ++ P+ P+ +
Sbjct: 34 TDFLDP---RQQMIVKTILGNDPDLIYGMEGGGASNERKR-AILAPDYEILAPEDYQLVL 89
Query: 71 ITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
+ ++ F H D LG+ + GI REK+GD+I++ K Q + E+++Y+ +L
Sbjct: 90 LEASYPDKFVTLEHRDVLGAFMSLGIRREKLGDLIVRDGK-IQIIAASEISEYIKMNLTG 148
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V +V P AL ++ +SLR+D L + +SR K I +G V+
Sbjct: 149 VKRSNVQFEEKPFSALLESDEEWAERESTVSSLRLDVLVKEIYGMSRKKAGLFIDSGQVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVE 231
VN+ V +L GD++S+ GKGR ++ ++ T+K K+ V+
Sbjct: 209 VNYRVVEDPAFSLEEGDMLSLRGKGRSRLLQVLGQTKKEKYKVK 252
>gi|456012727|gb|EMF46415.1| hypothetical protein B481_2169 [Planococcus halocryophilus Or1]
Length = 261
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 13/226 (5%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAAL 69
+DFL P + ES+M DV + G + AER R L + E D +I
Sbjct: 35 TDFLDPRQRFIVESVMGS---TDVNMMTSGIFKDAERQRVLLYPSYFEPQQEDFNI-TVF 90
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ F H D LGSI+ G+ R K GDI + E+ Q V+ E++ YL ++
Sbjct: 91 ELKYPSKFVNLRHPDILGSIMSLGLDRSKFGDIRIDNER-VQLAVMNEISSYLQSNFVSA 149
Query: 130 GNVSVSCTRIPLLA--LEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
V V + L +E T+ T+ +S+R+D + S+ + +SR K LI G V
Sbjct: 150 AKVKVQLNEVTDLTEMIETSEEWTEESYTV-SSMRLDTVMSSVYNISRQKAAALIHGGKV 208
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
+VNWT + L D++S G GR+++ I T+K K +++
Sbjct: 209 KVNWTLQEQPSFELHESDMISSRGFGRVRLIMIEGRTKKDKVRLQI 254
>gi|389815970|ref|ZP_10207207.1| hypothetical protein A1A1_04062 [Planococcus antarcticus DSM 14505]
gi|388465464|gb|EIM07781.1| hypothetical protein A1A1_04062 [Planococcus antarcticus DSM 14505]
Length = 261
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 15/227 (6%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAAL 69
+DFL P + E++M +DV+ ++ G + AER R L + E D I
Sbjct: 35 TDFLDPRQRFIVEAVMGS---SDVEMMSSGVFKNAERQRVLLYPSYFEPQQEDFSI-TVF 90
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ F H D LGS++ G+ R K GDI + E+ Q V+ E++ YL ++
Sbjct: 91 ELKYPSKFVNLRHPDILGSLMSLGLDRSKFGDIRIDNER-VQLAVMNEISPYLESNFISA 149
Query: 130 GNVSVS---CTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
V + T I L E +S+ +S+R+D + S+ + +SR K LI G
Sbjct: 150 AKVKIQLNEVTEIEQLIDTSEEWTEESYTV--SSMRLDTVMSSVYNISRQKASALIHGGK 207
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
V+VNWT + L D++S G GR+++ I T+K K +++
Sbjct: 208 VKVNWTLQEQPSFELHESDMISSRGYGRVRLIMIEGRTKKDKVRLQV 254
>gi|421892503|ref|ZP_16323156.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Streptococcus pyogenes NS88.2]
gi|379981755|emb|CCG26878.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Streptococcus pyogenes NS88.2]
Length = 239
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 69
++FL P +E M+ +L L D+K Y +E R+ + G+ + SD I A +
Sbjct: 14 TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 69
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
I+ F +H LG+++ G+ R GD+ + E G AQ ++ EL DY + ++
Sbjct: 70 EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 127
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+ SV + L +++ + +S R+D + + K SR++++ LI +
Sbjct: 128 KITKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVAIILKKSRTQVIALIEANKI 187
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+VN+ K L GD+VS+ G GR + N T+ GK + L
Sbjct: 188 KVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 233
>gi|450051080|ref|ZP_21840652.1| hypothetical protein SMU68_04771 [Streptococcus mutans NFSM1]
gi|449202211|gb|EMC03150.1| hypothetical protein SMU68_04771 [Streptococcus mutans NFSM1]
Length = 262
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + +A KLSR + LI + V
Sbjct: 151 KIGEAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|450064071|ref|ZP_21845250.1| hypothetical protein SMU70_08128 [Streptococcus mutans NLML5]
gi|449204034|gb|EMC04857.1| hypothetical protein SMU70_08128 [Streptococcus mutans NLML5]
Length = 263
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 38 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 92
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 93 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + +A KLSR + LI + V
Sbjct: 152 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLIESEKV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 212 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 250
>gi|449967082|ref|ZP_21812613.1| hypothetical protein SMU40_08873 [Streptococcus mutans 15VF2]
gi|450048099|ref|ZP_21839652.1| hypothetical protein SMU66_09372 [Streptococcus mutans N34]
gi|450088528|ref|ZP_21854815.1| hypothetical protein SMU77_07276 [Streptococcus mutans NV1996]
gi|450132364|ref|ZP_21870018.1| hypothetical protein SMU88_03772 [Streptococcus mutans NLML8]
gi|450143397|ref|ZP_21873436.1| hypothetical protein SMU9_01432 [Streptococcus mutans 1ID3]
gi|450180689|ref|ZP_21887384.1| hypothetical protein SMU99_03694 [Streptococcus mutans 24]
gi|449152356|gb|EMB56066.1| hypothetical protein SMU9_01432 [Streptococcus mutans 1ID3]
gi|449153233|gb|EMB56920.1| hypothetical protein SMU88_03772 [Streptococcus mutans NLML8]
gi|449169407|gb|EMB72183.1| hypothetical protein SMU40_08873 [Streptococcus mutans 15VF2]
gi|449197160|gb|EMB98367.1| hypothetical protein SMU66_09372 [Streptococcus mutans N34]
gi|449216439|gb|EMC16557.1| hypothetical protein SMU77_07276 [Streptococcus mutans NV1996]
gi|449248096|gb|EMC46359.1| hypothetical protein SMU99_03694 [Streptococcus mutans 24]
Length = 262
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + +A KLSR + LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIAAVLKLSRRQANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|172057962|ref|YP_001814422.1| RNA-binding S4 domain-containing protein [Exiguobacterium sibiricum
255-15]
gi|171990483|gb|ACB61405.1| RNA-binding S4 domain protein [Exiguobacterium sibiricum 255-15]
Length = 257
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 113/227 (49%), Gaps = 18/227 (7%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVA-QGGYPQAERCRLSVG--HPEALTSDPDIVAALS 70
+DFL P +E + E + A+ +GG+ AER R + + E +D DI A
Sbjct: 34 TDFLDP---REQQITRELVGTKCALFFEGGFEGAERQRALIAPDYYELDANDFDI-AIYR 89
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F SH G++L G+ R K GD+++Q ++ QF V E+A Y+ ++++ G
Sbjct: 90 IHYPTKFVELSHRQVTGTLLNVGLKRGKFGDVVIQ-DQLVQFAVAKEVASYIEANVDRAG 148
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIE-----ASLRVDALASAGFKLSRSKLVNLISNG 185
+ R+ L+ E E + K + E +SLR D + S SR K +LI G
Sbjct: 149 KTKI---RLSLVDSE-EQLKIKDQEWQEELGFVSSLRFDTVVSEILGFSRQKAQSLIKQG 204
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVE 231
+ +VN+ V L GD++S+ G GR+K I + ST++ + ++
Sbjct: 205 ESKVNYKIVEDPSFLLEEGDLLSLRGTGRVKLIAVLGSTKRDRIKLQ 251
>gi|225018391|ref|ZP_03707583.1| hypothetical protein CLOSTMETH_02338 [Clostridium methylpentosum
DSM 5476]
gi|224948809|gb|EEG30018.1| hypothetical protein CLOSTMETH_02338 [Clostridium methylpentosum
DSM 5476]
Length = 249
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 14/183 (7%)
Query: 62 DPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPE 117
+PD+ +A+L+ G+ SH DFLGS++G I R+ +GDI GE F V
Sbjct: 73 EPDLAEFPIASLTAEYPVGY-ALSHRDFLGSLMGLQIKRDAVGDI-FPGEGWCVFFVRES 130
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLS 174
+ + ++ L KVG V V +P + +E P F+ + ASLR+D + + +LS
Sbjct: 131 VREVVLEQLTKVGRVGVRI--VP--GIRHELPSHAKFEPVSGTVASLRLDCVVALLSRLS 186
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRKGKFAVELI 233
R K I G V+VN T L+ GDI+S+ G G+ + E+ T+KG+ +
Sbjct: 187 REKASAAIQLGTVQVNHETAQSCSLALKPGDILSIRGCGKFLLADEVKQTKKGRLFITGK 246
Query: 234 QYL 236
+Y+
Sbjct: 247 KYI 249
>gi|422881776|ref|ZP_16928232.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK355]
gi|332363499|gb|EGJ41281.1| S4 domain-containing protein YlmH [Streptococcus sanguinis SK355]
Length = 261
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 6/208 (2%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 89
K DV+ A Y +E R+ V L D ++ L I+ F SH +G++
Sbjct: 52 KQYDVQVFASSDYFPSELARVLVAPSYYQLNMDDFELSLLEISYASKFYKISHSQIMGTL 111
Query: 90 LGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEP 148
L GI R GDI++ E AQ V LA Y I + K+ + V + E
Sbjct: 112 LNQLGIERRTFGDILV-IEDRAQLFVDKRLAQYFIDHVSKIAKMPVKLKEVSFAEQLKEQ 170
Query: 149 PRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVS 208
+ + + +SLR+D L ++ FKLSRS+ LIS V++N+ + D++S
Sbjct: 171 KQAVTRDILVSSLRLDKLVASTFKLSRSQAAQLISGKHVKMNYAVNNNPSQQVGLEDLIS 230
Query: 209 VSGKGRIKIGEINSTRKG---KFAVELI 233
V GR K+ N K K VEL+
Sbjct: 231 VRRFGRFKVLRENGLSKNGKHKLTVELL 258
>gi|379795557|ref|YP_005325555.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872547|emb|CCE58886.1| ribosomal protein S4, putative [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 259
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+K GG P AER R +S + E SD ++ + + I F H LG+++
Sbjct: 57 DLKVSFNGG-PFAERKRAIISPSYFEPKESDFEL-SLIEINYPEKFVTLKHQHILGTLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ GE G QF++ L +++ L+++ SV IPL +
Sbjct: 115 LGIEREQVGDIIV-GE-GIQFVLTSRLESFIMLELQRIKGASVKLNTIPLTDMIQSNENW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIDKKRVKVNHTIVDSADFQLQANDLISIQG 232
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249
>gi|449980225|ref|ZP_21817084.1| hypothetical protein SMU50_02473 [Streptococcus mutans 5SM3]
gi|449177243|gb|EMB79553.1| hypothetical protein SMU50_02473 [Streptococcus mutans 5SM3]
Length = 262
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP K + +S+R+D + +A KLSR K LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIKEMNVLVSSMRLDKIIAAVLKLSRRKANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRDYGRFTISRDNGLSKG 249
>gi|333398679|ref|ZP_08480492.1| S4 domain-containing protein [Leuconostoc gelidum KCTC 3527]
gi|406600235|ref|YP_006745581.1| S4 domain-containing protein [Leuconostoc gelidum JB7]
gi|406371770|gb|AFS40695.1| S4 domain-containing protein [Leuconostoc gelidum JB7]
Length = 263
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+A L I F H LG+ + GI RE IGDI L +K Q +V ++ Y+ +
Sbjct: 92 LAILEIKYPVKFAELHHSMILGAFMSAGIKREVIGDI-LSNDKKWQVIVDAKMITYIQQT 150
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
++K+G + ++ + + + +SLR+D S F + RS +LI
Sbjct: 151 VQKIGRIKIALIARDVKDVIAVHDDWNEIFLLLSSLRIDTTISMAFNIPRSVAKSLIEQQ 210
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
VRVNWTT+ K + GDIVSV GR+++
Sbjct: 211 QVRVNWTTIVKPDHVVAVGDIVSVRKYGRLQL 242
>gi|169335053|ref|ZP_02862246.1| hypothetical protein ANASTE_01459 [Anaerofustis stercorihominis DSM
17244]
gi|169257791|gb|EDS71757.1| S4 domain protein [Anaerofustis stercorihominis DSM 17244]
Length = 247
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Query: 82 HGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPL 141
H D LGSIL + R K+GDI + + + V ++++L++ L K+G +V+ +
Sbjct: 93 HQDVLGSILSLSVDRSKVGDINILDDH-IEIFVYDTISEFLVSELTKIGGNNVTFYECDI 151
Query: 142 LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTL 201
P+ K I S+R+DA+ FKLSR++ + G V++N V+K T+
Sbjct: 152 NEASVIEPKFKELNIIVPSMRLDAVIGNIFKLSRNEANMFVKGGKVKINHNQVSKPAMTV 211
Query: 202 RTGDIVSVSGKGR-IKIGEINSTRKG 226
+ GD++SV KGR I E T+KG
Sbjct: 212 KVGDMISVRTKGRAIVDSESGQTKKG 237
>gi|404371421|ref|ZP_10976726.1| hypothetical protein CSBG_01278 [Clostridium sp. 7_2_43FAA]
gi|226912451|gb|EEH97652.1| hypothetical protein CSBG_01278 [Clostridium sp. 7_2_43FAA]
Length = 256
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 24/208 (11%)
Query: 39 AQGGYPQAERCRL------SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 92
A G + ++ER + +V +P + L I F H D+LGSIL
Sbjct: 63 ANGFFEESERRMICFNNLYNVDYP---------IKILEIKNKSNFSNLKHKDYLGSILSL 113
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
GI R K+GDII++ E A V+ E++DY+I +L +G + I ++ + P
Sbjct: 114 GIERNKLGDIIVK-ENKAYLPVLEEISDYIINNLSHIGKSPIEIKIIDNIS---DIPSV- 168
Query: 153 SFKTI---EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 209
+F+ I +SLR D++ + LSR+K + LI +G V +N+ + V++
Sbjct: 169 NFEEIVINVSSLRADSIVAKLSSLSRAKAIELIDSGKVLINYVKAKDKSQDIVKDTRVTI 228
Query: 210 SGKGRIKIGE-INSTRKGKFAVELIQYL 236
G G+ IG+ I TR GK + + +Y+
Sbjct: 229 RGIGKFIIGDVIGGTRSGKQRIVIKKYI 256
>gi|406577797|ref|ZP_11053386.1| hypothetical protein GMD6S_06984 [Streptococcus sp. GMD6S]
gi|404459490|gb|EKA05846.1| hypothetical protein GMD6S_06984 [Streptococcus sp. GMD6S]
Length = 263
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 64
R E ++ LTP + L LA + + G + E R+ + +P+ +P+
Sbjct: 28 RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84
Query: 65 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 119
I +A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 85 ISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ K+G + VS P + + + +S R+DAL S+ KLSR++
Sbjct: 144 PLFQDGIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTS 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
LI V+VN+ V K+ + GD++SV GR+K+ + N T+K K
Sbjct: 204 QLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 252
>gi|167771412|ref|ZP_02443465.1| hypothetical protein ANACOL_02778 [Anaerotruncus colihominis DSM
17241]
gi|167666052|gb|EDS10182.1| S4 domain protein [Anaerotruncus colihominis DSM 17241]
Length = 253
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 94/203 (46%), Gaps = 15/203 (7%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCS---HGDFLGSILGTGIARE 97
GGYP AER L P PD + + G++ H D LGS+ G I RE
Sbjct: 59 GGYPGAERVMLGAFAP---YEQPDETSFPIVPLTIGYRAQDAPGHRDLLGSLTGLAIGRE 115
Query: 98 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS-CTRIP--LLALEYEPPRTKSF 154
IGDI++ GE F V +A ++ L+K G V C +P L AL R
Sbjct: 116 AIGDILVGGEYAVCF-VSSAVAPVILNELKKAGRCGVRVCEGMPEVLPALH----RYADL 170
Query: 155 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 214
I SLR+D + +A LSR K I + V VN + + L GD+ S+ G G+
Sbjct: 171 PLIVTSLRLDCMVAAVAGLSREKAAQAIRSQLVAVNGAVLAQTSGMLCEGDVFSIRGYGK 230
Query: 215 IKIGEI-NSTRKGKFAVELIQYL 236
++ +ST+KG+ + +Y+
Sbjct: 231 YLFKQVLSSTKKGRLHILCRKYV 253
>gi|315613570|ref|ZP_07888477.1| S4 domain-containing protein YlmH [Streptococcus sanguinis ATCC
49296]
gi|315314261|gb|EFU62306.1| S4 domain-containing protein YlmH [Streptococcus sanguinis ATCC
49296]
Length = 263
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 64
R E ++ LTP + L LA + + G + E R+ + +P+ +P+
Sbjct: 28 RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84
Query: 65 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 119
I +A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 85 ISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ K+G + VS P + + + +S R+DAL S+ KLSR++
Sbjct: 144 PLFQDGIRKIGRLPVSLEECPFTDRIISKIDYREREILVSSFRLDALLSSALKLSRNQTS 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
LI V+VN+ V K+ + GD++SV GR+K+ + N T+K K
Sbjct: 204 QLIEKKSVQVNYHLVEKSDYQIAVGDLISVRKFGRLKVVKDNGQTKKDK 252
>gi|419818690|ref|ZP_14342638.1| hypothetical protein GMD4S_09320, partial [Streptococcus sp. GMD4S]
gi|404461223|gb|EKA07199.1| hypothetical protein GMD4S_09320, partial [Streptococcus sp. GMD4S]
Length = 281
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 64
R E ++ LTP + L LA + + G + E R+ + +P+ +P+
Sbjct: 46 RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 102
Query: 65 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 119
I +A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 103 ISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 161
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ K+G + VS P + + + +S R+DAL S+ KLSR++
Sbjct: 162 PLFQDGIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQAS 221
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
LI V+VN+ V K+ + GD++SV GR+K+ + N T+K K
Sbjct: 222 QLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 270
>gi|306827038|ref|ZP_07460336.1| S4 domain-containing protein YlmH [Streptococcus pyogenes ATCC
10782]
gi|304430784|gb|EFM33795.1| S4 domain-containing protein YlmH [Streptococcus pyogenes ATCC
10782]
Length = 263
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 13/226 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 69
++FL P +E M+ +L L D+K Y +E R+ + G+ + SD I A +
Sbjct: 38 TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
I+ F +H LG+++ G+ R GD+ + E G AQ ++ EL DY + ++
Sbjct: 94 EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+ SV + L +++ + +S R+D + + K R++++ LI +
Sbjct: 152 KIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKFRTQVIALIEANKI 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+VN+ K L GD+VS+ G GR + N T+ GK + L
Sbjct: 212 KVNYRLANKASDNLVIGDMVSIRGHGRFTLLADNGVTKHGKQKITL 257
>gi|293365886|ref|ZP_06612589.1| S4 domain-containing protein YlmH [Streptococcus oralis ATCC 35037]
gi|307702291|ref|ZP_07639249.1| S4 domain protein [Streptococcus oralis ATCC 35037]
gi|291315564|gb|EFE56014.1| S4 domain-containing protein YlmH [Streptococcus oralis ATCC 35037]
gi|307624094|gb|EFO03073.1| S4 domain protein [Streptococcus oralis ATCC 35037]
Length = 263
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 4/182 (2%)
Query: 48 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQG 106
R L + E SD ++ A L I F+ SHG LG+I+ GI R+ GDI++
Sbjct: 73 RVLLYPAYFEPEISDFEM-ALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-D 130
Query: 107 EKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDAL 166
EK AQ V + + K+G + VS P + + + +S R+DAL
Sbjct: 131 EKRAQIFVNRDFIPLFQDGIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRLDAL 190
Query: 167 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRK 225
S+ KLSR++ LI V+VN+ V K+ + GD++SV GR+K+ + N T+K
Sbjct: 191 LSSALKLSRNQTSQLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKK 250
Query: 226 GK 227
K
Sbjct: 251 DK 252
>gi|419780730|ref|ZP_14306571.1| S4 domain protein [Streptococcus oralis SK100]
gi|383184903|gb|EIC77408.1| S4 domain protein [Streptococcus oralis SK100]
Length = 263
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 3/169 (1%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQD 148
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+ K+G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 149 GIRKIGRLPVSLEERPFTDRILSKIDYREREVLVSSFRLDALLSSALKLSRNQASQLIEK 208
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
V+VN+ V K+ + GD++SV GR+KI + N T+K K + +
Sbjct: 209 KSVQVNYHLVEKSDYQVAVGDLISVRKFGRLKIVKDNGQTKKDKIKLSI 257
>gi|451819455|ref|YP_007455656.1| putative RNA-binding S4 domain-containing protein [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785434|gb|AGF56402.1| putative RNA-binding S4 domain-containing protein [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 254
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
V F TP V K L+ K + G + +AER +S + + P + L
Sbjct: 34 VFGRSFYTPNVWKWFEENLQS-NYFKVESNGLFQEAERRMVSFNNSD---ESPFPMKLLK 89
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
I F +H D+LG IL GI R KIGD+++ E V E+ +++I +LE++
Sbjct: 90 IENTSKFTSLTHRDYLGGILSLGIERNKIGDLLV-SENACYLPVHEEVEEFIIFNLERIA 148
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
V C + L++ P SFK + +SLR D + S SR+K +I G V
Sbjct: 149 --KVKCNVKIIDNLDFIPKF--SFKEELVLVSSLRADGIVSKITNASRTKAQGMIEQGQV 204
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 235
+N+ + L++ D +++ G G+ +G+ + +++ GK + + +Y
Sbjct: 205 LLNYAKIKDKSQELKSEDRITIRGFGKFILGDCVGNSKSGKVKLIIKKY 253
>gi|357239718|ref|ZP_09127052.1| S4 domain protein [Streptococcus ictaluri 707-05]
gi|356751474|gb|EHI68626.1| S4 domain protein [Streptococcus ictaluri 707-05]
Length = 263
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 4/173 (2%)
Query: 60 TSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPEL 118
T D D+ A + I+ N F SH LG+++ GI R +GDI L + AQ ++ +L
Sbjct: 85 TEDFDM-ALVEISYNAKFNHLSHAQILGTLINELGIKRSLLGDIYLDLDY-AQIMISRKL 142
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
YL+ ++ K+ SV+ + L + + +SLR+D L + KLSRS+
Sbjct: 143 LPYLLGNISKIARASVTLKEVTFDQLVQGTAQEITLDLTVSSLRLDRLLATVLKLSRSQA 202
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAV 230
+ LI V+ N+ + K ++ GD++S+ G GR K+ N T+ GK+ +
Sbjct: 203 IKLIETDKVKCNYQPMDKPSESVAVGDLISIRGFGRFKLLSDNGFTKNGKYKL 255
>gi|419781845|ref|ZP_14307659.1| S4 domain protein [Streptococcus oralis SK610]
gi|383183903|gb|EIC76435.1| S4 domain protein [Streptococcus oralis SK610]
Length = 263
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQD 148
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+ K+G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 149 GIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTSQLIEK 208
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
V+VN+ V K + GD++SV GR+K+ + N T+K K
Sbjct: 209 KSVQVNYHVVEKTDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 252
>gi|261367029|ref|ZP_05979912.1| putative YlmH protein [Subdoligranulum variabile DSM 15176]
gi|282571147|gb|EFB76682.1| S4 domain protein [Subdoligranulum variabile DSM 15176]
Length = 245
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 8/201 (3%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 100
GGY +AER L + PEA +P L+ + H D+LGSIL G+ R +G
Sbjct: 47 GGYDEAERKVLCLEPPEAWQEEPLAYLRLAALNAGEDKMPGHRDYLGSILALGLDRACLG 106
Query: 101 DIILQGEKGAQF--LVVPELADYLITSLEKVGNVSV---SCTRIPLLALEYEPPRTKSFK 155
D+I + A F +V+ + +++ + L G+ V C ++P+ + R
Sbjct: 107 DLIADPQDSAVFYAIVLADKQEFIASELTSAGHCPVRAECCEQLPVHVGQ-ATERALREA 165
Query: 156 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215
T+ +SLR DA+ +A SR+K + I+ G V +N + + DI +V G GR
Sbjct: 166 TV-SSLRADAVLAAMMHTSRTKAADYIAAGRVEINHLPLRAAHEPVYARDIFTVRGVGRY 224
Query: 216 KIGEI-NSTRKGKFAVELIQY 235
++ +I +RK + + QY
Sbjct: 225 QLADIGGKSRKDRIFISFFQY 245
>gi|340751680|ref|ZP_08688490.1| RNA binding protein [Fusobacterium mortiferum ATCC 9817]
gi|340562105|gb|EEO35691.2| RNA binding protein [Fusobacterium mortiferum ATCC 9817]
Length = 257
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
V +T F+ H +LG+I+ GI RE +GD+I++ + +V E+ D+L+ +
Sbjct: 89 VKYFKVTNRSKFKELEHKHYLGTIMSLGIKRELMGDLIVEDD-SCYGIVSEEIFDFLVDN 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-----ASLRVDALASAGFKLSRSKLVN 180
L++VG R P+ E + S K E +S+R+D + S SRSK +
Sbjct: 148 LKEVG-------RNPVTVEEVNRSQVPSLKFEELIDSVSSVRLDNIVSVMINNSRSKGLE 200
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAVELIQYL 236
LI G+V VN+ + + L+ GDIV++ KG+ +I +KGK V + +++
Sbjct: 201 LIETGEVSVNYVVDKEKNSPLKEGDIVTIRKKGKFIFEKILGENKKGKIRVLIKRFI 257
>gi|410455445|ref|ZP_11309325.1| RNA-binding S4 domain-containing protein [Bacillus bataviensis LMG
21833]
gi|409929272|gb|EKN66357.1| RNA-binding S4 domain-containing protein [Bacillus bataviensis LMG
21833]
Length = 257
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 7/221 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--IVAALSI 71
+DFL P M + + DV+ GG ER R + P+ L + D ++ I
Sbjct: 34 TDFLDPREQHILKMLIGENGDVRYSLFGGTEGVERKRAYI-FPDYLAASEDDFQISLFGI 92
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H LG+++ G+ R K GDI+++ + Q ++D++ +++E +G
Sbjct: 93 EYPAKFVTIEHRQVLGTLMSLGLKRGKFGDILMKDGR-IQLFAAKGISDFIKSNIESIGR 151
Query: 132 VSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
V + A+ + + T+ +SLR+D + S + +SR K + I +G V+VN
Sbjct: 152 AGVKLVETDITHAIAAKELWNEQDLTV-SSLRLDTVISGIYHISRQKSLTYIQHGLVKVN 210
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
WT GD++SV G GR KI I+ T++ K+ +
Sbjct: 211 WTVTENPSFACEAGDMISVRGHGRAKIIGIDGKTKREKWRI 251
>gi|419814631|ref|ZP_14339401.1| hypothetical protein GMD2S_05075 [Streptococcus sp. GMD2S]
gi|404471572|gb|EKA16081.1| hypothetical protein GMD2S_05075 [Streptococcus sp. GMD2S]
Length = 263
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 64
R E ++ LTP + L LA + + G + E R+ + +P+ +P+
Sbjct: 28 RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84
Query: 65 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 119
I +A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 85 ISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ K+G + VS P + + + +S R+DAL S+ KLSR++
Sbjct: 144 PLFQDGIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQAS 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
LI V+VN+ V K+ + GD++SV GR+K+ + N T+K K
Sbjct: 204 QLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 252
>gi|337281553|ref|YP_004621024.1| S4 domain-containing protein YlmH [Streptococcus parasanguinis ATCC
15912]
gi|335369146|gb|AEH55096.1| S4 domain-containing protein YlmH [Streptococcus parasanguinis ATCC
15912]
Length = 263
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 7/184 (3%)
Query: 56 PEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQF 112
P+ DP+ +A L + F SH LG+I+ G+ R+ GDI L E Q
Sbjct: 77 PDYYQLDPNDFDLALLEMVYASKFHHLSHSQVLGTIVHQLGVERKSFGDI-LTSEGKIQV 135
Query: 113 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 172
V Y + ++K+ V V +PL ++ + +S R+D + + FK
Sbjct: 136 FVEQRFVHYFMDHIQKISRVPVRLREVPLSEQMIVEEESQQRDILVSSFRLDKVIAGTFK 195
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI---GEINSTRKGKFA 229
LSRS+ LIS+G V+VN+ T + + D+VSV GR+KI I+ + K K
Sbjct: 196 LSRSQASQLISSGLVKVNYATTSNVSYAVGLNDLVSVRRFGRLKIVSENGISKSGKYKLT 255
Query: 230 VELI 233
VE++
Sbjct: 256 VEVL 259
>gi|319892185|ref|YP_004149060.1| hypothetical protein SPSINT_0896 [Staphylococcus pseudintermedius
HKU10-03]
gi|317161881|gb|ADV05424.1| hypothetical protein, contains S4- like RNA binding domain protein
[Staphylococcus pseudintermedius HKU10-03]
Length = 256
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 5/199 (2%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
D+ GG AERCR + S D +A + I F H LG+++
Sbjct: 54 DLHVSFDGG-RDAERCRAVIAPSYYEPSRDDFELALIEIDYPTKFVTLQHQHVLGTLMSL 112
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
GI RE++GDII+ + QF++ +L Y++ L ++ ++ IP + +
Sbjct: 113 GIEREQVGDIIVA--ERIQFVLTKQLESYIMLELTRIKGATIKLHVIPFEDMIQSEEYWE 170
Query: 153 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
+ + ++ R+D + + SR+ I V+VN T + L GD++S+ G
Sbjct: 171 THEATVSATRLDVVLKEMIRKSRTIAKTHIQRKRVKVNHTLIEAADFQLEAGDLLSIQGY 230
Query: 213 GRIKIGEI-NSTRKGKFAV 230
GR KI EI N T+K K +
Sbjct: 231 GRAKITEIGNRTKKDKLRI 249
>gi|449953891|ref|ZP_21809141.1| hypothetical protein SMU36_00920 [Streptococcus mutans 4VF1]
gi|449171352|gb|EMB74016.1| hypothetical protein SMU36_00920 [Streptococcus mutans 4VF1]
Length = 262
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F +H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLTHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + + KLSR + LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIATVLKLSRRQANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|381183326|ref|ZP_09892070.1| S4 domain protein, partial [Listeriaceae bacterium TTU M1-001]
gi|380316771|gb|EIA20146.1| S4 domain protein, partial [Listeriaceae bacterium TTU M1-001]
Length = 216
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILG 91
+++ GG P ER R ++ +P+ T D D + I F SH LG+++
Sbjct: 55 NIEVAFSGGTPFTERKR-ALIYPDYYTPEDEDFNLTLFHIRYPVKFTTLSHQKILGTLMS 113
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPL-LALEYEPPR 150
GI R+ GDI+ G++ QF E+ +Y++ L+K+G V++ + PL AL+ E
Sbjct: 114 LGIKRDIFGDIVNLGDEW-QFFADAEMENYILNQLDKIGKVNIMLEKWPLDEALQVEQVW 172
Query: 151 TKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTV 194
T T +SLR+D++ + LSR K+ +I V+VNW V
Sbjct: 173 TGEMIT-ASSLRLDSIIANALHLSRQKVKQMIQAKLVKVNWKVV 215
>gi|225870034|ref|YP_002745981.1| hypothetical protein SEQ_0625 [Streptococcus equi subsp. equi 4047]
gi|225699438|emb|CAW92932.1| conserved hypothetical protein [Streptococcus equi subsp. equi
4047]
Length = 264
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 14/227 (6%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAAL 69
+DFL P +LK + A +++ + Y +E R+ V D +A +
Sbjct: 38 TDFLNPREVTILKGLVAA----TNLQCFSSTDYYPSEYGRVIVAPDYYCLDKADFDLALI 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
+T N F +H LG+++ GI R +GDI + E G AQ ++ +L Y + ++
Sbjct: 94 EVTYNAKFNQLTHAQILGTLINELGIKRALLGDIFV--EIGHAQVMINRQLLSYCLGTIA 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDALASAGFKLSRSKLVNLISNGD 186
K+ V I L L + I +SLRVD L + K SR++ + L+ G
Sbjct: 152 KIAKARVKLKEIDLDQLLNLTANQQVLTDIMVSSLRVDRLIATVLKQSRNQAIRLVEAGK 211
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
V+VN+ VTK + GD++S+ G GR I N T+ GK+ + L
Sbjct: 212 VKVNYQLVTKASQPVAVGDLISIRGYGRFSILTDNGFTKNGKYKLTL 258
>gi|225868958|ref|YP_002744906.1| hypothetical protein SZO_13920 [Streptococcus equi subsp.
zooepidemicus]
gi|225702234|emb|CAW99980.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus]
Length = 264
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 18/229 (7%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVA 67
+DFL P +LK + A +++ + Y +E R+ V P+ SD D+ A
Sbjct: 38 TDFLNPREVTILKGLVAA----TNLQCFSSTDYYPSEYGRVIVA-PDYYCLDKSDFDL-A 91
Query: 68 ALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITS 125
+ +T N F +H LG+++ GI R +GDI + E G AQ ++ +L Y + +
Sbjct: 92 LIEVTYNAKFNQLTHAQILGTLINELGIKRALLGDIFV--EIGHAQVMINRQLLSYCLGT 149
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDALASAGFKLSRSKLVNLISN 184
+ K+ V I L L + I +SLRVD L + K SR++ + L+
Sbjct: 150 IAKIARARVKLKEIDLDQLLNLTTNQQVLADIMVSSLRVDRLIATVLKQSRNQAIRLVEA 209
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
G V+VN+ VTK + GD++S+ G GR I N T+ GK+ + L
Sbjct: 210 GKVKVNYQLVTKASQPVAIGDLISIRGYGRFSILTDNGFTKNGKYKLTL 258
>gi|414563542|ref|YP_006042503.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338846607|gb|AEJ24819.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 264
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 14/227 (6%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAAL 69
+DFL P +LK + A +++ + Y +E R+ V D +A +
Sbjct: 38 TDFLNPREVTILKGLVAA----TNLQCFSSTDYYPSEYGRVIVAPDYYCLDKADFDLALI 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
+T N F +H LG+++ GI R +GDI + E G AQ ++ +L Y + ++
Sbjct: 94 EVTYNAKFNQLTHAQILGTLINELGIKRALLGDIFV--EIGHAQVMINRQLLSYCLGTIA 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDALASAGFKLSRSKLVNLISNGD 186
K+ V I L L + I +SLRVD L + K SR++ + L+ G
Sbjct: 152 KIARARVKLKEIDLDQLLNLTANQQVLTDIMVSSLRVDRLIATVLKQSRNQAIRLVEAGK 211
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
V+VN+ VTK + GD++S+ G GR I N T+ GK+ + L
Sbjct: 212 VKVNYQLVTKASQPVAVGDLISIRGYGRFSILTDNGFTKNGKYKLTL 258
>gi|322375671|ref|ZP_08050183.1| YlmH protein [Streptococcus sp. C300]
gi|321279379|gb|EFX56420.1| YlmH protein [Streptococcus sp. C300]
Length = 263
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 64
R E ++ LTP + L LA + + G + E R+ + +P+ +P+
Sbjct: 28 RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84
Query: 65 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 119
I +A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 85 ISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ K+G + VS P + + + +S R+DAL S+ KLSR++
Sbjct: 144 PLFQDGIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTS 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
LI V+VN+ V K+ + GD++SV GR+K+ + N T+K K
Sbjct: 204 QLIEKKSVQVNYHLVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 252
>gi|357637966|ref|ZP_09135839.1| S4 domain protein [Streptococcus urinalis 2285-97]
gi|418417463|ref|ZP_12990658.1| hypothetical protein HMPREF9318_01406 [Streptococcus urinalis
FB127-CNA-2]
gi|357586420|gb|EHJ55828.1| S4 domain protein [Streptococcus urinalis 2285-97]
gi|410871382|gb|EKS19330.1| hypothetical protein HMPREF9318_01406 [Streptococcus urinalis
FB127-CNA-2]
Length = 262
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 5/170 (2%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
+A + I+ N F HG LG+++ GI REKIGDI + + AQ LV + L
Sbjct: 89 LALIEISYNAKFNHLKHGQILGTLINELGIKREKIGDIYVH-DGFAQVLVDCSIVALLKQ 147
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
S+ ++ VS I ++ + + +S+R+D + ++ FKLSR++ ++LI +
Sbjct: 148 SITRIARAKVSVKEISYNQFVRPEIANQTIELLLSSMRLDKIVASTFKLSRNQAISLIES 207
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE---INSTRKGKFAVE 231
V+VN+ K L D++SV G GRI + E ++ + K K VE
Sbjct: 208 DRVKVNYRPKNKISEQLTIDDLISVRGFGRIYLKEDHGLSKSGKHKVVVE 257
>gi|403667697|ref|ZP_10932997.1| hypothetical protein KJC8E_02927 [Kurthia sp. JC8E]
Length = 263
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 10/225 (4%)
Query: 15 DFLTPPVLKESMMALEKLADVKAVAQGGYP-QAERCRLSVGHPEALT--SDPDIVAALSI 71
DFL P +K + K DV G + ER R + +P + D + L +
Sbjct: 36 DFLDPRQVKIIEAIIGKNEDVHFSVDGAFGGNVERVR-GMLYPSYIVPVKDDFQLCVLGV 94
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H D LG++L GI R K GDI + E QF+V E+ADY+ +L +G
Sbjct: 95 RYASKFVQLKHPDVLGALLHLGIDRTKFGDIRIDSEM-VQFVVAQEVADYVRANLTTIGK 153
Query: 132 VSVSCTRIPLLAL--EYEPPRTKSFKTIEASLRVDALASAGF-KLSRSKLVNLISNGDVR 188
+ + L E P +S T +SLR+D + ++ + +SR K LI G V+
Sbjct: 154 SKATIIEVSEQQLIGESNDPWLESVVTT-SSLRLDTVIASCYPSISRQKAAMLIEAGRVK 212
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
VN+T +N L+ D++S+ G GR+ + I T+K K +++
Sbjct: 213 VNYTVREQNAFELQEHDLLSIRGVGRLVLLSIEGHTKKEKIRLKI 257
>gi|399517498|ref|ZP_10759048.1| hypothetical protein, contains S4-like RNA binding domain
[Leuconostoc pseudomesenteroides 4882]
gi|398647622|emb|CCJ67075.1| hypothetical protein, contains S4-like RNA binding domain
[Leuconostoc pseudomesenteroides 4882]
Length = 265
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 6/228 (2%)
Query: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-T 60
++A ++ + FL P + + + +++ GG AE R + PE
Sbjct: 27 VKQADDDYRLILTRFLNPREQYILQTLINRQSGLRSYLYGGVDGAESQRAIIA-PEVFEV 85
Query: 61 SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEK-GAQFLVVPEL 118
D + L++ F H LGS++ GI+R+ +GDI+ E+ Q +V ++
Sbjct: 86 KQEDFEIGLLTVQYPKKFATLHHSTILGSLMHLGISRDVLGDILFDNEETNWQIIVDQKM 145
Query: 119 ADYLITSLEKVGNVSVSCTRIPLL-ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSK 177
Y+ ++ KVG V+V+ L AL + F + +SLR+D + S+ F+LSRS
Sbjct: 146 LAYIQQTVTKVGRVAVNLKAQSLSEALPVLTNWQEQF-ALMSSLRLDVVISSVFQLSRSD 204
Query: 178 LVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
LI +G V VNW K + D++SV GR +I ++ K
Sbjct: 205 TKTLIESGQVHVNWMLAQKTNLEIAVNDLISVRKHGRAQIKSLDGRSK 252
>gi|406659214|ref|ZP_11067352.1| S4 domain-containing protein YlmH [Streptococcus iniae 9117]
gi|405577323|gb|EKB51471.1| S4 domain-containing protein YlmH [Streptococcus iniae 9117]
Length = 263
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 12/229 (5%)
Query: 11 VLH-SDFLTPPVLKESMMALEKLAD--VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-V 66
VLH +DFL P ++ +A +A + + Q+E RL + + D +
Sbjct: 34 VLHVTDFLNP---RQITIAKNVVAHSGLHCYSSTDSFQSEYGRLIIAPDYYQLDEADFEI 90
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ L + + F H LG+++ GI R IGDI+++ E AQ +V L Y + +
Sbjct: 91 SLLEMRYHAKFNQLKHSQILGTLINELGIKRSLIGDILVE-EGYAQLMVCQHLLSYFLGN 149
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE-ASLRVDALASAGFKLSRSKLVNLISN 184
+ ++ SVS I + + P S + +SLR+D L ++ KLSR + + LI++
Sbjct: 150 ITRIARTSVSLKEIDF-SKQIIPKMQASMVDVTVSSLRIDRLMASILKLSRHQAIKLIAS 208
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
V +N+ + K L GD+VSV G GR + N T+ GK + L
Sbjct: 209 EKVTINYRKINKASDLLEVGDLVSVRGFGRFMLMADNGFTKNGKHKLTL 257
>gi|410724123|ref|ZP_11363322.1| hypothetical protein A370_01382 [Clostridium sp. Maddingley
MBC34-26]
gi|410602409|gb|EKQ56889.1| hypothetical protein A370_01382 [Clostridium sp. Maddingley
MBC34-26]
Length = 258
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 13/224 (5%)
Query: 16 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF 75
F TP + L D+K + G + AER +S + ++P + + I
Sbjct: 43 FYTPNIWTWFEKNLSS-NDLKIESNGLFEDAERRMISFNNS---YNNPFPMKLIKIENTS 98
Query: 76 GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 135
F SH DFLG IL GI R KIGD+++ + E+ +Y+I +++++ V +
Sbjct: 99 KFSKLSHRDFLGGILSLGIERNKIGDLLVDNN-TCYVPIHEEIENYIIYNIDRISKVVCN 157
Query: 136 CTRIPLLALEYEPPRTKSFK---TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWT 192
I L P+ + FK + +SLR+D + S +SRSK +I G V +N+
Sbjct: 158 VKVIDDFEL---LPKVQ-FKEEIILVSSLRIDGIVSKIINISRSKASEMIEQGLVLINYV 213
Query: 193 TVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 235
+ L+ + +++ G G+ +G+ I +++ GK + + +Y
Sbjct: 214 KIKDKSYELKGEERITIRGYGKFILGDSIGNSKSGKIKIVIKKY 257
>gi|310828905|ref|YP_003961262.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308740639|gb|ADO38299.1| hypothetical protein ELI_3337 [Eubacterium limosum KIST612]
Length = 244
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 6/198 (3%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 100
GG A R L + +P+ L +D L++ F P H + LG ++ GI RE +G
Sbjct: 51 GGTENAGRRMLCI-YPDYLEADTLEWPMLAVAFPKEF-PMDHRNVLGELMHLGITRECVG 108
Query: 101 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRI-PLLALEYEPPRTKSFKTIEA 159
DI + E+ Q + L D++ + KV ++ + P L +E R K + + A
Sbjct: 109 DINMNDEE-VQVVFAERLRDFITLNFTKVKGRTIKPEILEPDLIKTFEL-RFKRLELVAA 166
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
S R+D + + + SR + I VRVN+ VTKN ++ GD++S GKG+ I E
Sbjct: 167 SDRLDGVINKIWGFSRQDSITYIKQRRVRVNYEAVTKNDYRIKNGDVISFRGKGKAVITE 226
Query: 220 INS-TRKGKFAVELIQYL 236
+ T+KG + + +Y+
Sbjct: 227 LGGVTKKGNLRLIVDKYI 244
>gi|420185503|ref|ZP_14691595.1| YlmH protein [Staphylococcus epidermidis NIHLM040]
gi|394254489|gb|EJD99458.1| YlmH protein [Staphylococcus epidermidis NIHLM040]
Length = 220
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 7/201 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILG 91
D+ GG P AER R + P P+ ++ F H LG+++
Sbjct: 18 DLHVTFFGG-PHAERKRAIIA-PLYFKPQPEDFELTLFELHYPKKFVTIQHQHVLGTLMS 75
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDII+ GE QF++ +L Y+I+ L ++ SV IP +
Sbjct: 76 LGIQRDQLGDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENW 133
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K T ++LR+D + SR+ LI V+VN T + L D++S+ G
Sbjct: 134 KVHSTTVSALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSIQG 193
Query: 212 KGRIKIGEI-NSTRKGKFAVE 231
GR +I EI T+K K +
Sbjct: 194 YGRAQIVEIGGKTKKNKLHIH 214
>gi|323489507|ref|ZP_08094734.1| hypothetical protein GPDM_09180 [Planococcus donghaensis MPA1U2]
gi|323396638|gb|EGA89457.1| hypothetical protein GPDM_09180 [Planococcus donghaensis MPA1U2]
Length = 261
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 11/225 (4%)
Query: 14 SDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAAL 69
+DFL P + E++M DV+ + G + AER R L + E D +I
Sbjct: 35 TDFLDPRQRFIVEAVMGS---TDVRMMTSGVFKDAERQRVLLYPSYFEPQQEDFNI-TVF 90
Query: 70 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ F H D LGSI+ G+ R K GDI + ++ Q V+ E+ YL ++
Sbjct: 91 ELKYPSKFVNLRHPDILGSIMSLGLDRSKFGDIRIDNDR-VQLAVMNEIGPYLQSNFVSA 149
Query: 130 GNVSVSCTRI-PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
V V + L + +S+R+D + S+ + +SR K LI G V+
Sbjct: 150 AKVKVQLNEVTDLTEMIETSEEWTEESYTVSSMRLDTVMSSVYNISRQKAAALIHGGKVK 209
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
VNWT + L D++S G GR+++ I T+K K +++
Sbjct: 210 VNWTLQDQPSFELHESDMISSRGFGRVRLIMIEGRTKKDKVRLQI 254
>gi|310778916|ref|YP_003967249.1| RNA-binding S4 domain-containing protein [Ilyobacter polytropus DSM
2926]
gi|309748239|gb|ADO82901.1| RNA-binding S4 domain protein [Ilyobacter polytropus DSM 2926]
Length = 258
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 117/234 (50%), Gaps = 21/234 (8%)
Query: 12 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV---GHPEALTSDPDIVAA 68
+H+ PP + ++ ++ ++ ++G ++E+ + + + E P A
Sbjct: 35 IHTKIFFPPEVWSTLENMKNSLGIEVESKGVKQESEKRVILIKPLAYGEYFEDYP--FAY 92
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF-LVVPELADYLITSLE 127
I G F+ H FL +I+G GI RE +GD+I++ +G + ++ +L ++L +L+
Sbjct: 93 FEIRGGSKFKELEHRHFLAAIMGLGIKREMLGDLIVK--EGVCYGVIFRDLFNFLENNLK 150
Query: 128 KVGNVSVSCTR-----IPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 182
+G + V + IP + E + +SLR+D++ +A + SRS+ LI
Sbjct: 151 VIGKIKVEVSETEEKNIPEMEFE-------EITYLVSSLRLDSIVAAITEKSRSQATELI 203
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELIQY 235
G V +N++ + +++ GDI++V KG+ ++ ++KGK V L +Y
Sbjct: 204 REGTVSLNYSVRREKDASIKDGDIITVRRKGKFIFEKVTGVSKKGKQRVVLKKY 257
>gi|257125826|ref|YP_003163940.1| RNA-binding S4 domain-containing protein [Leptotrichia buccalis
C-1013-b]
gi|257049765|gb|ACV38949.1| RNA-binding S4 domain protein [Leptotrichia buccalis C-1013-b]
Length = 298
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 5/173 (2%)
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGE--KGAQFLVVPE-LADYLITS 125
L I+ + F+ SH DFLGS++G I RE +GD+IL+ E K + ++ V E +ADY+I+
Sbjct: 126 LKISIDSRFREYSHKDFLGSLMGLNIKRELMGDLILENEGRKISGYIPVSEKIADYIISE 185
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGFKLSRSKLVNLISN 184
L+++G S I P K I S R+D++ S LSR+K++ I
Sbjct: 186 LKQIGKASCEIEIIDTKNKNVLPQYKYDNKLITVPSKRLDSIISTITNLSRTKVIEPIEK 245
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG-EINSTRKGKFAVELIQYL 236
G V V++ L G ++++ G G+ K+ + T+KGK + + +Y+
Sbjct: 246 GKVLVDYVEEKDKSRMLEIGSLITIRGFGKYKLFLDKGETKKGKERILVKKYI 298
>gi|418624936|ref|ZP_13187596.1| S4 domain protein [Staphylococcus epidermidis VCU125]
gi|420172808|ref|ZP_14679306.1| YlmH protein [Staphylococcus epidermidis NIHLM067]
gi|374826201|gb|EHR90109.1| S4 domain protein [Staphylococcus epidermidis VCU125]
gi|394241485|gb|EJD86899.1| YlmH protein [Staphylococcus epidermidis NIHLM067]
Length = 220
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 7/201 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILG 91
D+ GG P AER R + P P+ + F H LG+++
Sbjct: 18 DLHVTFFGG-PHAERKRAIIA-PLYFKPQPENFELTLFELQYPKKFVTIQHQHVLGTLMS 75
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDII+ GE QF++ +L Y+I+ L ++ SV IP +
Sbjct: 76 LGIQRDQLGDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENW 133
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K T ++LR+D + SR+ LI V+VN T + L D++S+ G
Sbjct: 134 KVHSTTVSALRLDVVLKEMIHKSRNIAQQLIIKNRVKVNHTIIDSTDFQLEQNDLLSIQG 193
Query: 212 KGRIKIGEI-NSTRKGKFAVE 231
GR +I EI T+K K +
Sbjct: 194 YGRAQIVEIGGKTKKNKLHIH 214
>gi|315658522|ref|ZP_07911394.1| S4 domain-containing protein YlmH [Staphylococcus lugdunensis
M23590]
gi|385784647|ref|YP_005760820.1| hypothetical protein SLUG_17090 [Staphylococcus lugdunensis
N920143]
gi|418414322|ref|ZP_12987537.1| hypothetical protein HMPREF9308_00702 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418637505|ref|ZP_13199824.1| S4 domain protein [Staphylococcus lugdunensis VCU139]
gi|315496851|gb|EFU85174.1| S4 domain-containing protein YlmH [Staphylococcus lugdunensis
M23590]
gi|339894903|emb|CCB54204.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|374838751|gb|EHS02286.1| S4 domain protein [Staphylococcus lugdunensis VCU139]
gi|410876929|gb|EKS24826.1| hypothetical protein HMPREF9308_00702 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 264
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 93/199 (46%), Gaps = 5/199 (2%)
Query: 34 DVKAVAQGG-YPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 92
D++ GG Y + +R ++ + E D ++ L I F H LG+++
Sbjct: 62 DIQVAFNGGLYAERQRAIIAPSYYEPRVEDFEL-CCLEIDYPEKFVTLQHQHVLGTLMSL 120
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
GI RE++GDI + QF++ +L Y++ L ++ +V IPL + K
Sbjct: 121 GIEREQVGDI--HVAQRIQFVLTRQLESYIMMELTRIKGATVKLNSIPLQDMIQSEENWK 178
Query: 153 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
T +++R+D + SRS LI V+VN T V + L D++S+ G
Sbjct: 179 IQHTTVSAMRLDVVLKDMIHKSRSIAKQLIEKKRVKVNHTIVEASDFQLEPNDLLSIQGY 238
Query: 213 GRIKIGEI-NSTRKGKFAV 230
GR ++ EI T+K K+ +
Sbjct: 239 GRAQLLEIGGRTKKDKYYI 257
>gi|329769776|ref|ZP_08261177.1| hypothetical protein HMPREF0433_00941 [Gemella sanguinis M325]
gi|328838138|gb|EGF87756.1| hypothetical protein HMPREF0433_00941 [Gemella sanguinis M325]
Length = 256
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 25 SMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGD 84
S +A D K GGY +ER + + E D DIV L N F H +
Sbjct: 47 SKVAAYNYPDYKVDFFGGYEGSERKKAKIISNEYYDIDYDIVC-LKANYNNKFNKIEHRN 105
Query: 85 FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL 144
LG++ GI ++GDI++ E V E+AD++ L K+G V++ + L +
Sbjct: 106 VLGTVHNLGINFNRVGDIVV-SESSIYIFVDREIADFIKMELTKIGRVNLEFKEVSELDI 164
Query: 145 EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG 204
+ + + F+ + +S R+D++ + SRSK+ + V++N V
Sbjct: 165 DI-KKQFQDFEIVTSSFRIDSIVAKITNKSRSKIKEFLEQEFVKLNHVIVKNGEKNCSVD 223
Query: 205 DIVSVSGKGRIKIGEINSTRKG 226
DI+S+ GR I ++
Sbjct: 224 DIISIRKYGRFTIKSFEQNKRS 245
>gi|297588313|ref|ZP_06946956.1| probable RNA binding protein [Finegoldia magna ATCC 53516]
gi|297573686|gb|EFH92407.1| probable RNA binding protein [Finegoldia magna ATCC 53516]
Length = 258
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 10/233 (4%)
Query: 9 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG----HPEALTSDPD 64
+ + +DF+ P ++ + L DV + E + + + E + D
Sbjct: 31 KTIYATDFMNPKEIEYATSILNAETDVGYMVTNCPVNCENKIIIMWDRYCYSEEYINMFD 90
Query: 65 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
+ L I + Q +H D LG++L GI REKIGDI K + +L
Sbjct: 91 YIGLLEIQTD---QEITHRDILGAVLNLGINREKIGDIFTHN-KRFYLCATNTMIKFLNL 146
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+L K+ ++S T I +E + KSF I S R+D L S +SR +I N
Sbjct: 147 NLTKIKKFNIS-TSIIEENIEKDEEMFKSFTGIINSERLDCLVSEMANISRKDAQIMIKN 205
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQYL 236
+++N+ ++ ++ +VS+ G GR ++ E + ST+K K ++ I+Y+
Sbjct: 206 KKIKLNYEVISNTSKSVEENSLVSIRGYGRYRLLEYLGSTKKDKLRIKYIKYI 258
>gi|317131685|ref|YP_004090999.1| RNA-binding S4 domain-containing protein [Ethanoligenens harbinense
YUAN-3]
gi|315469664|gb|ADU26268.1| RNA-binding S4 domain protein [Ethanoligenens harbinense YUAN-3]
Length = 248
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 90
K AD + GGY AER L V P+ D ++ + +H DFLG++L
Sbjct: 46 KHADASFLLWGGYADAERRMLGV-FPQEEVPDGAAFPITAVQIIWKGAELNHRDFLGALL 104
Query: 91 GTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPR 150
G+ REK+GD++++ FL +A ++ ++L +VG + VSC E + R
Sbjct: 105 SLGLKREKVGDLVVRSNDCVAFL-ENAVAAFVRSNLSRVGRIGVSCE-----PYEGDVRR 158
Query: 151 TKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 207
F I AS R+D + +A SR++ + I+ G V +++ TVT + G +
Sbjct: 159 EAHFAEIGGTVASERLDCVVAALTGCSRTQAEDGITAGRVALDFRTVTDRACRVPPGASL 218
Query: 208 SVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
S+ G GR + E+ TRKG+ +Y+
Sbjct: 219 SIRGCGRFVVDELGPPTRKGRLRFAARKYV 248
>gi|420165270|ref|ZP_14671974.1| YlmH protein [Staphylococcus epidermidis NIHLM088]
gi|394236437|gb|EJD81971.1| YlmH protein [Staphylococcus epidermidis NIHLM088]
Length = 220
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 7/201 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R + P P+ ++ + F H LG+++
Sbjct: 18 DLHVTFFGG-PHAERKRAIIA-PLYFKPQPEDFELSLFELQYPKKFVTIQHQHVLGTLMS 75
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDII+ GE QF++ +L Y+I+ L ++ SV IP +
Sbjct: 76 LGIQRDQLGDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENW 133
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K T ++LR+D + SR+ LI V+VN T + L D++S+ G
Sbjct: 134 KVHSTTVSALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTIIDSTDFQLEQNDLLSIQG 193
Query: 212 KGRIKIGEI-NSTRKGKFAVE 231
GR +I EI T+K K +
Sbjct: 194 YGRAQIVEIGGKTKKNKLHIH 214
>gi|293366844|ref|ZP_06613520.1| S4 domain-containing protein YlmH [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417660116|ref|ZP_12309707.1| S4 domain protein [Staphylococcus epidermidis VCU045]
gi|417909732|ref|ZP_12553465.1| S4 domain protein [Staphylococcus epidermidis VCU037]
gi|417910811|ref|ZP_12554527.1| S4 domain protein [Staphylococcus epidermidis VCU105]
gi|418616643|ref|ZP_13179567.1| S4 domain protein [Staphylococcus epidermidis VCU120]
gi|418622161|ref|ZP_13184917.1| S4 domain protein [Staphylococcus epidermidis VCU123]
gi|418628976|ref|ZP_13191492.1| S4 domain protein [Staphylococcus epidermidis VCU127]
gi|420163469|ref|ZP_14670216.1| YlmH protein [Staphylococcus epidermidis NIHLM095]
gi|420167548|ref|ZP_14674200.1| YlmH protein [Staphylococcus epidermidis NIHLM087]
gi|420182861|ref|ZP_14688994.1| YlmH protein [Staphylococcus epidermidis NIHLM049]
gi|420187603|ref|ZP_14693623.1| YlmH protein [Staphylococcus epidermidis NIHLM039]
gi|420194071|ref|ZP_14699900.1| YlmH protein [Staphylococcus epidermidis NIHLM021]
gi|420197083|ref|ZP_14702807.1| YlmH protein [Staphylococcus epidermidis NIHLM020]
gi|420211917|ref|ZP_14717273.1| YlmH protein [Staphylococcus epidermidis NIHLM001]
gi|420214328|ref|ZP_14719607.1| YlmH protein [Staphylococcus epidermidis NIH05005]
gi|420216158|ref|ZP_14721380.1| YlmH protein [Staphylococcus epidermidis NIH05001]
gi|420222017|ref|ZP_14726942.1| S4 domain protein [Staphylococcus epidermidis NIH08001]
gi|420224879|ref|ZP_14729717.1| S4 domain protein [Staphylococcus epidermidis NIH06004]
gi|420226982|ref|ZP_14731755.1| S4 domain protein [Staphylococcus epidermidis NIH05003]
gi|420229304|ref|ZP_14734010.1| S4 domain protein [Staphylococcus epidermidis NIH04003]
gi|291319145|gb|EFE59515.1| S4 domain-containing protein YlmH [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329734440|gb|EGG70753.1| S4 domain protein [Staphylococcus epidermidis VCU045]
gi|341652341|gb|EGS76129.1| S4 domain protein [Staphylococcus epidermidis VCU037]
gi|341654999|gb|EGS78735.1| S4 domain protein [Staphylococcus epidermidis VCU105]
gi|374820721|gb|EHR84797.1| S4 domain protein [Staphylococcus epidermidis VCU120]
gi|374827536|gb|EHR91398.1| S4 domain protein [Staphylococcus epidermidis VCU123]
gi|374834970|gb|EHR98601.1| S4 domain protein [Staphylococcus epidermidis VCU127]
gi|394235158|gb|EJD80732.1| YlmH protein [Staphylococcus epidermidis NIHLM095]
gi|394237576|gb|EJD83062.1| YlmH protein [Staphylococcus epidermidis NIHLM087]
gi|394249324|gb|EJD94537.1| YlmH protein [Staphylococcus epidermidis NIHLM049]
gi|394256045|gb|EJE00981.1| YlmH protein [Staphylococcus epidermidis NIHLM039]
gi|394265890|gb|EJE10536.1| YlmH protein [Staphylococcus epidermidis NIHLM020]
gi|394266769|gb|EJE11394.1| YlmH protein [Staphylococcus epidermidis NIHLM021]
gi|394280427|gb|EJE24708.1| YlmH protein [Staphylococcus epidermidis NIHLM001]
gi|394283693|gb|EJE27858.1| YlmH protein [Staphylococcus epidermidis NIH05005]
gi|394290048|gb|EJE33918.1| S4 domain protein [Staphylococcus epidermidis NIH08001]
gi|394292608|gb|EJE36350.1| YlmH protein [Staphylococcus epidermidis NIH05001]
gi|394294282|gb|EJE37968.1| S4 domain protein [Staphylococcus epidermidis NIH06004]
gi|394297483|gb|EJE41080.1| S4 domain protein [Staphylococcus epidermidis NIH05003]
gi|394299070|gb|EJE42621.1| S4 domain protein [Staphylococcus epidermidis NIH04003]
Length = 220
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 7/201 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILG 91
D+ GG P AER R + P P+ + F H LG+++
Sbjct: 18 DLHVTFFGG-PHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMS 75
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDII+ GE QF++ +L Y+I+ L ++ SV IP +
Sbjct: 76 LGIQRDQLGDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENW 133
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K T ++LR+D + SR+ LI V+VN T + L D++S+ G
Sbjct: 134 KVHSTTVSALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSIQG 193
Query: 212 KGRIKIGEI-NSTRKGKFAVE 231
GR +I EI T+K K +
Sbjct: 194 YGRAQIVEIGGKTKKNKLHIH 214
>gi|314933367|ref|ZP_07840732.1| YlmH protein [Staphylococcus caprae C87]
gi|313653517|gb|EFS17274.1| YlmH protein [Staphylococcus caprae C87]
Length = 262
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 6/200 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILG 91
D+ V G P AER R + P + P+ ++ L I F H LG+++
Sbjct: 59 DMLKVNFYGGPYAERKRAIIA-PSYYEAQPEDFELSLLRIDYPEKFVSIHHQHVLGTLMS 117
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ G+ QF++ L Y++ L ++ +V IP+ +
Sbjct: 118 LGIEREQLGDIIVAGD--IQFVLTERLESYIMFELNRIKGATVKLNSIPIKDMIQSEENW 175
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K T +++R+D + SR+ LI V+VN T + L D++S+ G
Sbjct: 176 KIHSTTVSAMRLDVVLKDMIHKSRNIAKQLIEKKRVKVNHTIIDTPDFQLEQNDLLSIQG 235
Query: 212 KGRIKIGEI-NSTRKGKFAV 230
GR +I +I T+K K +
Sbjct: 236 FGRAQITQIGGRTKKDKLHI 255
>gi|450137355|ref|ZP_21871594.1| hypothetical protein SMU89_01932 [Streptococcus mutans NLML1]
gi|449235429|gb|EMC34387.1| hypothetical protein SMU89_01932 [Streptococcus mutans NLML1]
Length = 262
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 12/219 (5%)
Query: 14 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAA 68
++FL P V+K S++ KL + + +E RL + + E +D I +
Sbjct: 37 TEFLNPRQITVMK-SILGQTKL---QVYQSSDFISSENARLLIAPAYYELNIADFHI-SL 91
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I N F H LG+++ GI R +GDII+Q E AQ + + YL +
Sbjct: 92 LEINYNSKFNQLIHSQILGTLINRLGIERYLLGDIIVQ-ENRAQVFIEKTMVSYLNAQVT 150
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+G +V IP + + +S+R+D + + KLSR + LI + V
Sbjct: 151 KIGKAAVVFEEIPFERQITSQSHIREMNVLVSSMRLDKIIATVLKLSRRQANQLIESEKV 210
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG 226
++N+ K + GD++SV G GR I N KG
Sbjct: 211 KLNYLVQPKVSHLIDIGDLISVRGYGRFTISRDNGLSKG 249
>gi|420209529|ref|ZP_14714966.1| YlmH protein [Staphylococcus epidermidis NIHLM003]
gi|394278976|gb|EJE23288.1| YlmH protein [Staphylococcus epidermidis NIHLM003]
Length = 220
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 7/201 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILG 91
D+ GG P AER R + P P+ + F H LG+++
Sbjct: 18 DLHVTFFGG-PHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMS 75
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDII+ GE QF++ +L Y+I+ L ++ SV IP +
Sbjct: 76 LGIQRDQLGDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTKDMIQSEENW 133
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K T ++LR+D + SR+ LI V+VN T + L D++S+ G
Sbjct: 134 KVHSTTVSALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTIIDSTDFQLEQNDLLSIQG 193
Query: 212 KGRIKIGEI-NSTRKGKFAVE 231
GR +I EI T+K K +
Sbjct: 194 YGRAQIVEIGGKTKKNKLHIH 214
>gi|325263921|ref|ZP_08130654.1| putative S4 domain protein [Clostridium sp. D5]
gi|324030959|gb|EGB92241.1| putative S4 domain protein [Clostridium sp. D5]
Length = 258
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 118/243 (48%), Gaps = 14/243 (5%)
Query: 5 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL----T 60
A R + +SDFL L + + V GGY AER +++ P+AL
Sbjct: 19 AYHRDIITYSDFLNLNELNILHSLPKDRLYTRYVTFGGYGTAER-QMAAFLPDALYLRGI 77
Query: 61 SD------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLV 114
+D P V ++ + +H D+LG+ L GI R ++GDI++ G+K F V
Sbjct: 78 TDMEALGFPFSVLSIEPLNEKYAEELTHRDYLGAALNLGIERSRLGDILIDGKKAILF-V 136
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 174
L+ +L L +V + SV L Y PR + K AS+R+D+L S F S
Sbjct: 137 EKGLSAWLQEELARVRHTSVMLREESLQDFHY-TPRFEEIKGTVASVRLDSLLSLAFSSS 195
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI-GEINSTRKGKFAVELI 233
R++L LI G V VN +T N ++ DI+SV G G+ + G ++ T+K + V +
Sbjct: 196 RTRLSGLIEGGKVFVNGKLMTTNSCQVKEEDIISVRGMGKFQYKGVLSRTKKNRIFVIIH 255
Query: 234 QYL 236
+Y+
Sbjct: 256 KYI 258
>gi|395242180|ref|ZP_10419179.1| S4 domain protein [Lactobacillus pasteurii CRBIP 24.76]
gi|394480541|emb|CCI85419.1| S4 domain protein [Lactobacillus pasteurii CRBIP 24.76]
Length = 267
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 3/185 (1%)
Query: 41 GGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
GGY +ER R LS L D +IV L I F H D LG++ +G++
Sbjct: 66 GGYKDSERRRVYLSSNWNGILPDDFEIVP-LEIEYPSKFISLRHSDILGTLANSGVSLNT 124
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE 158
GDII G QF V +LA + + ++G V +I + + I
Sbjct: 125 FGDIIGDGMGRWQFFVKKDLAVFFTDQISRIGKNKVRIKQISPKEVLVPEDNSIEVTAIV 184
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218
+S+R+DA+ S+ K SR ++ LI G ++NW + ++ DI+S+ GR ++
Sbjct: 185 SSMRLDAILSSLSKQSRVQIKQLIEGGQAKLNWLETKNSNIIVKVNDIISLRHLGRAQVL 244
Query: 219 EINST 223
++ +T
Sbjct: 245 DVQAT 249
>gi|251810621|ref|ZP_04825094.1| ribosomal protein S4e [Staphylococcus epidermidis BCM-HMP0060]
gi|282876378|ref|ZP_06285245.1| S4 domain protein [Staphylococcus epidermidis SK135]
gi|417645978|ref|ZP_12295863.1| S4 domain protein [Staphylococcus epidermidis VCU144]
gi|417913413|ref|ZP_12557080.1| S4 domain protein [Staphylococcus epidermidis VCU109]
gi|418603427|ref|ZP_13166812.1| S4 domain protein [Staphylococcus epidermidis VCU041]
gi|418609817|ref|ZP_13172951.1| S4 domain protein [Staphylococcus epidermidis VCU065]
gi|420202094|ref|ZP_14707689.1| YlmH protein [Staphylococcus epidermidis NIHLM018]
gi|420206488|ref|ZP_14711998.1| YlmH protein [Staphylococcus epidermidis NIHLM008]
gi|421607307|ref|ZP_16048553.1| hypothetical protein B440_03118 [Staphylococcus epidermidis
AU12-03]
gi|251805781|gb|EES58438.1| ribosomal protein S4e [Staphylococcus epidermidis BCM-HMP0060]
gi|281295403|gb|EFA87930.1| S4 domain protein [Staphylococcus epidermidis SK135]
gi|329729990|gb|EGG66381.1| S4 domain protein [Staphylococcus epidermidis VCU144]
gi|341655695|gb|EGS79419.1| S4 domain protein [Staphylococcus epidermidis VCU109]
gi|374406153|gb|EHQ77056.1| S4 domain protein [Staphylococcus epidermidis VCU065]
gi|374407596|gb|EHQ78449.1| S4 domain protein [Staphylococcus epidermidis VCU041]
gi|394270067|gb|EJE14590.1| YlmH protein [Staphylococcus epidermidis NIHLM018]
gi|394278327|gb|EJE22644.1| YlmH protein [Staphylococcus epidermidis NIHLM008]
gi|406657099|gb|EKC83492.1| hypothetical protein B440_03118 [Staphylococcus epidermidis
AU12-03]
Length = 220
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 7/201 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILG 91
D+ GG P AER R + P P+ + F H LG+++
Sbjct: 18 DLHVTFFGG-PHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMS 75
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDII+ GE QF++ +L Y+I+ L ++ SV IP +
Sbjct: 76 LGIQRDQLGDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENW 133
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K T ++LR+D + SR+ LI V+VN T + L D++S+ G
Sbjct: 134 KVHSTTVSALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTIIDSTDFQLEQNDLLSIQG 193
Query: 212 KGRIKIGEI-NSTRKGKFAVE 231
GR +I EI T+K K +
Sbjct: 194 YGRAQIVEIGGKTKKNKLHIH 214
>gi|322389018|ref|ZP_08062588.1| S4 domain-containing protein YlmH [Streptococcus parasanguinis ATCC
903]
gi|321144323|gb|EFX39731.1| S4 domain-containing protein YlmH [Streptococcus parasanguinis ATCC
903]
Length = 263
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 119
SD D+ A L + F +H LG+I+ G+ R+ GDI L E Q V
Sbjct: 85 SDFDL-ALLEMVYASKFHHLTHSQVLGTIVHQLGVERKSFGDI-LTSEGKIQVFVEQRFV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y + ++K+ V V +PL ++ + +S R+D + + FKLSRS+
Sbjct: 143 AYFMDHIQKISRVPVKLREVPLSEQMIVEEESQQRDILVSSYRLDKVIAGTFKLSRSQAS 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK-GKFAV 230
LIS+G V+VN+ T + + D+VSV GR+KI N K GK+ V
Sbjct: 203 QLISSGLVKVNYATTSNVSYAVGLNDLVSVRRFGRLKIVSENGISKSGKYKV 254
>gi|418325065|ref|ZP_12936275.1| S4 domain protein [Staphylococcus epidermidis VCU071]
gi|365228971|gb|EHM70143.1| S4 domain protein [Staphylococcus epidermidis VCU071]
Length = 220
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 7/201 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILG 91
D+ GG P AER R + P P+ + F H LG+++
Sbjct: 18 DLHVTFFGG-PHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMS 75
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDII+ GE QF++ +L Y+I+ L ++ SV IP +
Sbjct: 76 LGIQRDQLGDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENW 133
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K T ++LR+D + SR+ LI V+VN T + L D++S+ G
Sbjct: 134 KVHSTTVSALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSIQG 193
Query: 212 KGRIKIGEI-NSTRKGKFAVE 231
GR +I EI T+K K +
Sbjct: 194 YGRAQIVEIGGKTKKHKLHIH 214
>gi|418312632|ref|ZP_12924141.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21334]
gi|365238277|gb|EHM79114.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21334]
Length = 259
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ + +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNEKW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249
>gi|387879109|ref|YP_006309412.1| hypothetical protein Spaf_0590 [Streptococcus parasanguinis FW213]
gi|419800611|ref|ZP_14325884.1| S4 domain protein [Streptococcus parasanguinis F0449]
gi|385694545|gb|EIG25140.1| S4 domain protein [Streptococcus parasanguinis F0449]
gi|386792564|gb|AFJ25599.1| hypothetical protein Spaf_0590 [Streptococcus parasanguinis FW213]
Length = 263
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 7/184 (3%)
Query: 56 PEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQF 112
P+ DP+ +A L + F SH LG+I+ G+ R+ GDI L + Q
Sbjct: 77 PDYYQLDPNDFDLALLEMVYASKFHHLSHSQVLGTIVHQLGVERKSFGDI-LTSDGKIQV 135
Query: 113 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 172
V Y + ++K+ V V +PL ++ + +S R+D + + FK
Sbjct: 136 FVEQRFVHYFMDHIQKISRVPVRLREVPLSEQMIVEEESQQRDILVSSFRLDKVIAGTFK 195
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI---GEINSTRKGKFA 229
LSRS+ LIS+G V+VN+ T + + D+VSV GR+KI I+ + K K
Sbjct: 196 LSRSQASQLISSGLVKVNYATTSNISYAVGLNDLVSVRRFGRLKIVSENGISKSGKYKLT 255
Query: 230 VELI 233
VE++
Sbjct: 256 VEVL 259
>gi|241889477|ref|ZP_04776776.1| putative S4 domain-containing protein [Gemella haemolysans ATCC
10379]
gi|241863784|gb|EER68167.1| putative S4 domain-containing protein [Gemella haemolysans ATCC
10379]
Length = 256
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 3/191 (1%)
Query: 25 SMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGD 84
S + +D K GG+ AER + + E D DIV L N F H +
Sbjct: 47 SQIVAYNYSDFKVEFFGGFDDAERKKAKIISNEYYDVDYDIVC-LKAKFNNKFNRVEHRN 105
Query: 85 FLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL 144
LG++ GI + GDII+ E V E+ADY+ K G V++ R+ L +
Sbjct: 106 ILGAVHNLGINFNRFGDIIV-IENEVYIFVDEEIADYIAMEFTKAGRVNLDFQRVDLAEV 164
Query: 145 EYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG 204
E + + F+ + +S R+D++ + SRSK+ + +++N + T +
Sbjct: 165 GIEK-KYEDFEIVSSSFRIDSIVAKITNKSRSKVKEFLEQDFIKLNHVVLRNGEKTCTSE 223
Query: 205 DIVSVSGKGRI 215
D +S+ GR
Sbjct: 224 DTISIRKYGRF 234
>gi|319947482|ref|ZP_08021714.1| S4 domain-containing protein YlmH [Streptococcus australis ATCC
700641]
gi|417919819|ref|ZP_12563343.1| S4 domain protein [Streptococcus australis ATCC 700641]
gi|319746422|gb|EFV98683.1| S4 domain-containing protein YlmH [Streptococcus australis ATCC
700641]
gi|342831796|gb|EGU66106.1| S4 domain protein [Streptococcus australis ATCC 700641]
Length = 262
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 11/194 (5%)
Query: 43 YP-QAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIG 100
YP + R L+ + + SD +I + L + F SH LGS+L GI R+ G
Sbjct: 65 YPTEYARVILAPSYYQLEASDFEI-SLLEVLYPDKFYRLSHSQVLGSLLHQLGIERKSFG 123
Query: 101 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPL---LALEYEPPRTKSFKTI 157
DI++ G+ V + Y +L+K+ SV I +++E EP + K +
Sbjct: 124 DILV-GQGKIHIYVDQRFSSYFKENLKKIAKASVKIREIDCRERISVE-EPSKFKDL--L 179
Query: 158 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK- 216
S+R+D L ++ FKL+RS V L+ +G V+VN+ T+ ++ D++SV GR K
Sbjct: 180 VTSVRLDKLVASTFKLARSVAVQLVQSGQVKVNYATIDNPSRMIQVADLISVRKYGRFKM 239
Query: 217 IGEINSTRKGKFAV 230
+ E ++ GK+ +
Sbjct: 240 LSENGLSKSGKYKL 253
>gi|19746466|ref|NP_607602.1| RNA binding protein [Streptococcus pyogenes MGAS8232]
gi|19748670|gb|AAL98101.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 264
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 109/227 (48%), Gaps = 14/227 (6%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 69
++FL P +E M+ +L L D+K Y +E R+ + G+ + SD I A +
Sbjct: 38 TEFLNP---REVMILKSLIALTDLKMFVSTDYYPSEYGRVIIAPGYYDLEQSDFQI-ALV 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKG-AQFLVVPELADYLITSLE 127
I+ F +H LG+++ G+ R GD+ + E G AQ ++ EL DY + ++
Sbjct: 94 EISYQAKFNQLTHSQILGTLINELGVKRNLFGDVFV--EMGYAQLMIKRELLDYFLGTIT 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+ SV + L +++ + +S R+D + + K SR++++ LI +
Sbjct: 152 KIAKTSVKLREVNFDQLIRSIDNSQTLDILVSSFRLDGVVATILKKSRTQVIALIEANKI 211
Query: 188 RVNWTTVTKNGTTLRT-GDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
+VN+ K L GD+VS+ G GR + N T+ GK + L
Sbjct: 212 KVNYRLANKASDNLVIGGDMVSIRGHGRFTLLADNGVTKHGKQKITL 258
>gi|386319543|ref|YP_006015706.1| RNA-binding S4 domain-containing protein [Staphylococcus
pseudintermedius ED99]
gi|323464714|gb|ADX76867.1| RNA-binding S4 domain protein [Staphylococcus pseudintermedius
ED99]
Length = 256
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 5/199 (2%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 92
D+ GG AERCR + S D + + I F H LG+++
Sbjct: 54 DLHVSFDGG-RDAERCRAVIAPSYYEPSRDDFELTLIEIDYPTKFVTLQHQHVLGTLMSL 112
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
GI RE++GDII+ + QF++ +L Y++ L ++ ++ IP + +
Sbjct: 113 GIEREQVGDIIVA--ERIQFVLTKQLESYIMLELTRIKGATIKLHVIPFEDMIQSEEYWE 170
Query: 153 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
+ + ++ R+D + + SR+ I V+VN T + L GD++S+ G
Sbjct: 171 THEATVSATRLDVVLKEMIRKSRTIAKTHIQRKRVKVNHTLIEAADFQLEAGDLLSIQGY 230
Query: 213 GRIKIGEI-NSTRKGKFAV 230
GR KI EI N T+K K +
Sbjct: 231 GRAKITEIGNRTKKDKLRI 249
>gi|418888981|ref|ZP_13443117.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1524]
gi|377754491|gb|EHT78400.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1524]
Length = 259
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P ER R +S + E SD D+ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNVERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+T D++S+ G
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQTNDLISIQG 232
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249
>gi|418965341|ref|ZP_13517118.1| S4 domain protein [Streptococcus constellatus subsp. constellatus
SK53]
gi|423069037|ref|ZP_17057825.1| hypothetical protein HMPREF9682_01046 [Streptococcus intermedius
F0395]
gi|355365437|gb|EHG13160.1| hypothetical protein HMPREF9682_01046 [Streptococcus intermedius
F0395]
gi|383342848|gb|EID21051.1| S4 domain protein [Streptococcus constellatus subsp. constellatus
SK53]
Length = 263
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 8/205 (3%)
Query: 35 VKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 92
++ + Y +E ++ + + E SD +I L I+ F +H +G++L
Sbjct: 58 LQIFSSSDYYTSELAKVIIAPLYYELQVSDFEI-DLLEISYANKFHHLTHSQIMGTVLNQ 116
Query: 93 -GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+ GDI++ + AQ +V + + I + ++ SV ++ L +
Sbjct: 117 LGIERKVFGDILVASGR-AQIMVDRKFTQFFIDHISRIAKTSVKLKQVDFSQLIAVQADS 175
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K + +S+R+D + +A F+LSRS LI+ VRVN++ + L D++SV G
Sbjct: 176 KLRDVLVSSMRLDKVLAASFRLSRSVATKLIATKQVRVNYSMLDNPSHHLLLNDLISVRG 235
Query: 212 KGRIKIGEINSTRKG---KFAVELI 233
GR+K+ N K K VEL+
Sbjct: 236 YGRVKVLRENGFSKNGKYKLTVELL 260
>gi|330718664|ref|ZP_08313264.1| cell division protein [Leuconostoc fallax KCTC 3537]
Length = 261
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 7/237 (2%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+++ + R +L + FL P M + + D+ GG +AE R ++ PE +
Sbjct: 25 LSQSSDEYRPIL-TPFLNPREQYILKMVGQPIEDLNIFFDGGSVEAESQR-AIITPEYFS 82
Query: 61 SDP-DIVAAL-SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPEL 118
D D L I F SH LG++LG G+ R+ IGDI L E Q +V +
Sbjct: 83 KDNLDFEMTLFQIDYPIKFTTLSHPQILGALLGLGLQRKAIGDI-LNDEHIWQVMVDKRI 141
Query: 119 ADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKL 178
Y+ + KVG +V T +PL + + + +SLR+D L +A + LSR
Sbjct: 142 FTYIQQNFVKVGRTTVKVTALPLNKMIDTSKAWEEQFLLVSSLRLDTLVAASYHLSRVVA 201
Query: 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKF-AVELI 233
+I +G VR+NWT V K + + DIVSV GR ++ ++ T+K K A+E I
Sbjct: 202 KQMIESGQVRLNWTVVEKPDSLITINDIVSVHHYGRFQLKGLDGRTKKDKIKAIENI 258
>gi|224541714|ref|ZP_03682253.1| hypothetical protein CATMIT_00886 [Catenibacterium mitsuokai DSM
15897]
gi|224525318|gb|EEF94423.1| S4 domain protein [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 16/230 (6%)
Query: 7 SRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD 64
S+R +L + FL P + ES++ E +K A GG+ AE R+ + P+ +P+
Sbjct: 25 SQRMIL-TQFLDPHQQSIVESVIGHE----LKVEADGGFDGAENKRVLIA-PDFYEFEPE 78
Query: 65 --IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYL 122
V + N F H D LG+++ GI R+ IGDI E+ F + E +DY+
Sbjct: 79 DFKVTVFRVDYNDTFGKLKHSDVLGALMHLGIKRQCIGDI---NEEPLSFACIKENSDYI 135
Query: 123 ITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLI 182
+L ++ S+ + + TK+ I +SLR+D + +A F +SR+K V+ I
Sbjct: 136 RMNLTRIKRSSIHLVEMEERLSIHADTYTKT--VIVSSLRLDKMVAALFGISRNKAVDAI 193
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVE 231
V++N+ + I+S+ GR+KI + T++ + +E
Sbjct: 194 HGQYVKLNYKVIEDISKICDNNAIISLRHHGRVKIFITDRRTKQDNYVIE 243
>gi|306824771|ref|ZP_07458115.1| S4 domain-containing protein YlmH [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|417793712|ref|ZP_12440983.1| S4 domain protein [Streptococcus oralis SK255]
gi|304432982|gb|EFM35954.1| S4 domain-containing protein YlmH [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|334272140|gb|EGL90510.1| S4 domain protein [Streptococcus oralis SK255]
Length = 263
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 13/234 (5%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 64
R E ++ LTP + L LA + + G + E R+ + +P+ +P+
Sbjct: 28 RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84
Query: 65 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 119
I + L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 85 ISDFEMTLLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ K+G + VS P + + + +S R+DAL S+ KLSR++
Sbjct: 144 PLFQDGIRKIGRLPVSLEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTS 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
LI V+VN+ V K+ + GD++SV GR+K+ + N T+K K + +
Sbjct: 204 QLIEKKSVQVNYHLVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDKIKLSI 257
>gi|416839232|ref|ZP_11902626.1| YlmH protein [Staphylococcus aureus O11]
gi|416847396|ref|ZP_11907118.1| YlmH protein [Staphylococcus aureus O46]
gi|323440963|gb|EGA98670.1| YlmH protein [Staphylococcus aureus O11]
gi|323442280|gb|EGA99910.1| YlmH protein [Staphylococcus aureus O46]
Length = 268
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSANFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|414158875|ref|ZP_11415167.1| hypothetical protein HMPREF9188_01441 [Streptococcus sp. F0441]
gi|410868858|gb|EKS16822.1| hypothetical protein HMPREF9188_01441 [Streptococcus sp. F0441]
Length = 263
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 13/234 (5%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 64
R E ++ LTP + L LA + + G + E R+ + +P+ +P+
Sbjct: 28 RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84
Query: 65 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 119
I + L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 85 ISDFEMTLLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ K+G + VS P + + + +S R+DAL S+ KLSR++
Sbjct: 144 PLFQDGIRKIGRLPVSLEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTS 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
LI V+VN+ V K+ + GD++SV GR+K+ + N T+K K + +
Sbjct: 204 QLIEKKSVQVNYHLVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDKIKLSI 257
>gi|414160466|ref|ZP_11416734.1| hypothetical protein HMPREF9310_01108 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878364|gb|EKS26249.1| hypothetical protein HMPREF9310_01108 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 241
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 6/220 (2%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEALTSDPDIVAALSI 71
+ FL P + + D++ GG P +ER R + + E D ++V +
Sbjct: 18 THFLDPRAQYILEVIVNSFDDLQVSFNGGSPSSERKRAVIAPDYFEPTEEDFELVL-FDL 76
Query: 72 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
F H + LG+++ I R+++GDII+ G+K QF++ + Y++ L+++
Sbjct: 77 EYPEKFASIDHRNVLGTLMSFSIERDQLGDIIV-GDK-IQFILTKNIKSYIMLELKRIKG 134
Query: 132 VSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNW 191
V V +PL + + +++R+D + + SRS I ++VN
Sbjct: 135 VPVKLHEVPLEDMIQSKEDWTLHQATVSAMRLDVVLKEMIRKSRSIAKQYIEKKRIKVNH 194
Query: 192 TTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTRKGKFAV 230
T + + L GD++S+ G GR ++ EI + T+K K +
Sbjct: 195 TIIERPDFQLEPGDLLSIQGHGRARVTEIGHKTKKDKLRI 234
>gi|49483354|ref|YP_040578.1| hypothetical protein SAR1167 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257427905|ref|ZP_05604303.1| YlmH [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430538|ref|ZP_05606920.1| YlmH protein [Staphylococcus aureus subsp. aureus 68-397]
gi|257433299|ref|ZP_05609657.1| YlmH protein [Staphylococcus aureus subsp. aureus E1410]
gi|257436141|ref|ZP_05612188.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282903743|ref|ZP_06311631.1| YlmH protein [Staphylococcus aureus subsp. aureus C160]
gi|282905507|ref|ZP_06313362.1| hypothetical protein SDAG_01131 [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282913967|ref|ZP_06321754.1| YlmH protein [Staphylococcus aureus subsp. aureus M899]
gi|282918889|ref|ZP_06326624.1| hypothetical protein SASG_00195 [Staphylococcus aureus subsp.
aureus C427]
gi|282924012|ref|ZP_06331688.1| hypothetical protein SARG_01553 [Staphylococcus aureus subsp.
aureus C101]
gi|293501000|ref|ZP_06666851.1| hypothetical protein SCAG_01530 [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509958|ref|ZP_06668667.1| hypothetical protein SAZG_01859 [Staphylococcus aureus subsp.
aureus M809]
gi|293526547|ref|ZP_06671232.1| YlmH protein [Staphylococcus aureus subsp. aureus M1015]
gi|297591365|ref|ZP_06950003.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus MN8]
gi|384867927|ref|YP_005748123.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus TCH60]
gi|417888860|ref|ZP_12532962.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21195]
gi|418283010|ref|ZP_12895767.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21202]
gi|418582025|ref|ZP_13146103.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|418897728|ref|ZP_13451798.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418900598|ref|ZP_13454655.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|4009496|gb|AAC95463.1| YlmH [Staphylococcus aureus]
gi|49241483|emb|CAG40169.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257274746|gb|EEV06233.1| YlmH [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278666|gb|EEV09285.1| YlmH protein [Staphylococcus aureus subsp. aureus 68-397]
gi|257281392|gb|EEV11529.1| YlmH protein [Staphylococcus aureus subsp. aureus E1410]
gi|257284423|gb|EEV14543.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313984|gb|EFB44376.1| hypothetical protein SARG_01553 [Staphylococcus aureus subsp.
aureus C101]
gi|282316699|gb|EFB47073.1| hypothetical protein SASG_00195 [Staphylococcus aureus subsp.
aureus C427]
gi|282322035|gb|EFB52359.1| YlmH protein [Staphylococcus aureus subsp. aureus M899]
gi|282330799|gb|EFB60313.1| hypothetical protein SDAG_01131 [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282595361|gb|EFC00325.1| YlmH protein [Staphylococcus aureus subsp. aureus C160]
gi|290920619|gb|EFD97682.1| YlmH protein [Staphylococcus aureus subsp. aureus M1015]
gi|291096005|gb|EFE26266.1| hypothetical protein SCAG_01530 [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467408|gb|EFF09925.1| hypothetical protein SAZG_01859 [Staphylococcus aureus subsp.
aureus M809]
gi|297576251|gb|EFH94967.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus MN8]
gi|312438432|gb|ADQ77503.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus TCH60]
gi|341853980|gb|EGS94856.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21195]
gi|365168607|gb|EHM59945.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21202]
gi|377703066|gb|EHT27382.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|377710435|gb|EHT34673.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|377760763|gb|EHT84639.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC341D]
Length = 268
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|289551026|ref|YP_003471930.1| S4 RNA-binding protein [Staphylococcus lugdunensis HKU09-01]
gi|289180558|gb|ADC87803.1| S4-like RNA binding domain-containing hypothetical protein
[Staphylococcus lugdunensis HKU09-01]
Length = 264
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 4/195 (2%)
Query: 37 AVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 96
A G Y + +R ++ + E D ++ L I F H LG+++ GI R
Sbjct: 66 AFNDGLYAERQRAIIAPSYYEPRVEDFEL-CCLEIDYPEKFVTLQHQHVLGTLMSLGIER 124
Query: 97 EKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKT 156
E++GDI + QF++ +L Y++ L ++ +V IPL + K T
Sbjct: 125 EQVGDI--HVAQRIQFVLTRQLESYIMMELTRIKGATVKLNSIPLQDMIQSEENWKIQHT 182
Query: 157 IEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
+++R+D + SRS LI V+VN T V + L D++S+ G GR +
Sbjct: 183 TVSAMRLDVVLKDMIHKSRSIAKQLIEKKRVKVNHTIVEASDFQLEPNDLLSIQGYGRAQ 242
Query: 217 IGEI-NSTRKGKFAV 230
+ EI T+K K+ +
Sbjct: 243 LLEIGGRTKKDKYYI 257
>gi|421487487|ref|ZP_15934890.1| S4 domain protein [Streptococcus oralis SK304]
gi|400370914|gb|EJP23894.1| S4 domain protein [Streptococcus oralis SK304]
Length = 263
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 13/225 (5%)
Query: 17 LTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI----VAAL 69
LTP P ++ + L ++ + G + E R+ + +P+ +P+I + L
Sbjct: 37 LTPFINPHQEQILRVLAGTYELGCQSSGDFLPTESVRVLL-YPDYF--EPEISDFEMTLL 93
Query: 70 SITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
I F+ SHG LG+I+ GI R+ GDI++ EK AQ V + + K
Sbjct: 94 EICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQDGIRK 152
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
+G + VS P + + + +S R+DAL S+ KLSR++ LI V+
Sbjct: 153 IGRLPVSLEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTSQLIEKKSVQ 212
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
VN+ V K+ + GD++SV GR+K+ + N T+K K + +
Sbjct: 213 VNYHLVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDKIKLSI 257
>gi|386728870|ref|YP_006195253.1| RNA binding protein [Staphylococcus aureus subsp. aureus 71193]
gi|387602464|ref|YP_005733985.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
ST398]
gi|404478529|ref|YP_006709959.1| hypothetical protein C248_1220 [Staphylococcus aureus 08BA02176]
gi|418309681|ref|ZP_12921232.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21331]
gi|418978567|ref|ZP_13526367.1| RNA binding protein [Staphylococcus aureus subsp. aureus DR10]
gi|283470402|emb|CAQ49613.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
ST398]
gi|365237804|gb|EHM78643.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21331]
gi|379993391|gb|EIA14837.1| RNA binding protein [Staphylococcus aureus subsp. aureus DR10]
gi|384230163|gb|AFH69410.1| RNA binding protein [Staphylococcus aureus subsp. aureus 71193]
gi|404440018|gb|AFR73211.1| hypothetical protein C248_1220 [Staphylococcus aureus 08BA02176]
Length = 268
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|282910764|ref|ZP_06318567.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282325369|gb|EFB55678.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
Length = 268
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIKREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|418559205|ref|ZP_13123751.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21252]
gi|371975496|gb|EHO92790.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21252]
Length = 268
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|417797864|ref|ZP_12445050.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21310]
gi|418655142|ref|ZP_13217019.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-105]
gi|334276986|gb|EGL95225.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21310]
gi|375037991|gb|EHS30991.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-105]
Length = 268
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--QRIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|418561881|ref|ZP_13126356.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21262]
gi|371975157|gb|EHO92457.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21262]
Length = 268
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|418993807|ref|ZP_13541444.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG290]
gi|377746966|gb|EHT70936.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG290]
Length = 259
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249
>gi|420198977|ref|ZP_14704661.1| YlmH protein [Staphylococcus epidermidis NIHLM031]
gi|394272663|gb|EJE17113.1| YlmH protein [Staphylococcus epidermidis NIHLM031]
Length = 220
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 7/201 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILG 91
D+ GG P AER R + P P+ + F H LG+++
Sbjct: 18 DLHVTFFGG-PHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMS 75
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDII+ GE QF++ +L Y+I+ L ++ +V IP +
Sbjct: 76 LGIQRDQLGDIIV-GE-DIQFVLTKQLESYIISELTRIKGATVKLNSIPTEDMIQSEENW 133
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K T ++LR+D + SR+ LI V+VN T + L D++S+ G
Sbjct: 134 KVHSTTVSALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSIQG 193
Query: 212 KGRIKIGEI-NSTRKGKFAVE 231
GR +I EI T+K K +
Sbjct: 194 YGRAQIVEIGGKTKKNKLHIH 214
>gi|295427677|ref|ZP_06820309.1| hypothetical protein SIAG_00197 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|418565188|ref|ZP_13129602.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21264]
gi|418595566|ref|ZP_13159173.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21342]
gi|418601287|ref|ZP_13164725.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21345]
gi|418891823|ref|ZP_13445938.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|418908902|ref|ZP_13462905.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG149]
gi|418916986|ref|ZP_13470945.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|418922773|ref|ZP_13476690.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|418982104|ref|ZP_13529812.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|418985771|ref|ZP_13533457.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|295128035|gb|EFG57669.1| hypothetical protein SIAG_00197 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|371974669|gb|EHO91988.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21264]
gi|374399114|gb|EHQ70262.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21345]
gi|374401146|gb|EHQ72233.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21342]
gi|377704385|gb|EHT28694.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|377705589|gb|EHT29893.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|377731155|gb|EHT55212.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|377736096|gb|EHT60126.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|377750160|gb|EHT74098.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|377753940|gb|EHT77850.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG149]
Length = 259
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249
>gi|253731810|ref|ZP_04865975.1| ribosomal protein S4e [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253724460|gb|EES93189.1| ribosomal protein S4e [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 268
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRTHITDLGGKTKKDK 258
>gi|418411611|ref|ZP_12984878.1| hypothetical protein HMPREF9281_00482 [Staphylococcus epidermidis
BVS058A4]
gi|410892337|gb|EKS40131.1| hypothetical protein HMPREF9281_00482 [Staphylococcus epidermidis
BVS058A4]
Length = 220
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 6/193 (3%)
Query: 42 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 99
G P AER R + P P+ + F H LG+++ GI R+++
Sbjct: 25 GGPYAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDII+ GE QF++ +L Y+I+ L ++ SV IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
+LR+D + SR+ LI V+VN T + L D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSIQGYGRAQIVE 201
Query: 220 I-NSTRKGKFAVE 231
I T+K K +
Sbjct: 202 IGGKTKKNKLHIH 214
>gi|282916441|ref|ZP_06324203.1| hypothetical protein SATG_01276 [Staphylococcus aureus subsp.
aureus D139]
gi|283770253|ref|ZP_06343145.1| YlmH [Staphylococcus aureus subsp. aureus H19]
gi|384547433|ref|YP_005736686.1| hypothetical protein SAOV_1192 [Staphylococcus aureus subsp. aureus
ED133]
gi|384549947|ref|YP_005739199.1| S4 RNA binding domain protein [Staphylococcus aureus subsp. aureus
JKD6159]
gi|387780301|ref|YP_005755099.1| hypothetical protein SARLGA251_11020 [Staphylococcus aureus subsp.
aureus LGA251]
gi|417904139|ref|ZP_12547969.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21269]
gi|282319881|gb|EFB50229.1| hypothetical protein SATG_01276 [Staphylococcus aureus subsp.
aureus D139]
gi|283460400|gb|EFC07490.1| YlmH [Staphylococcus aureus subsp. aureus H19]
gi|298694482|gb|ADI97704.1| hypothetical protein SAOV_1192 [Staphylococcus aureus subsp. aureus
ED133]
gi|302332796|gb|ADL22989.1| S4 RNA binding domain protein [Staphylococcus aureus subsp. aureus
JKD6159]
gi|341847962|gb|EGS89131.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21269]
gi|344177403|emb|CCC87870.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
LGA251]
Length = 268
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|343524629|ref|ZP_08761587.1| S4 domain protein [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|343398278|gb|EGV10811.1| S4 domain protein [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
Length = 263
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 5/169 (2%)
Query: 69 LSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I+ F +H +G++L GI R+ GDI++ + AQ +V + + I +
Sbjct: 93 LEISYANKFHHLTHSQIMGTLLNQLGIERKVFGDILVASGR-AQIMVDRKFTQFFIDHIS 151
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
++ SV ++ L +K + +S+R+D + +A F+LSRS LI+ V
Sbjct: 152 RIAKTSVKLKQVDFSQLIAVQADSKLRDVLVSSMRLDKVLAASFRLSRSAATKLIATKQV 211
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKG---KFAVELI 233
RVN++ + L D++SV G GR+K+ N K K VEL+
Sbjct: 212 RVNYSMLDNPSHHLLLNDLISVRGYGRVKVLRENGFSKNGKCKLTVELL 260
>gi|417917500|ref|ZP_12561059.1| S4 domain protein [Streptococcus parasanguinis SK236]
gi|342830137|gb|EGU64476.1| S4 domain protein [Streptococcus parasanguinis SK236]
Length = 272
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 61 SDPDIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 119
SD D+ A L + F +H LG+I+ G+ R+ GDI L + Q V
Sbjct: 85 SDFDL-ALLEMVYASKFHHLTHSQVLGTIVHQLGVERKSFGDI-LTSDGKIQVFVEQRFV 142
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
Y + ++K+ V V +PL ++ + +S R+D + + FKLSRS+
Sbjct: 143 HYFMDHIQKISRVPVKLREVPLSEQMIVEEESQQRDILVSSYRLDKVIAGTFKLSRSQAS 202
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK-GKFAV 230
LIS+G V+VN+ T + + D+VSV GR+KI N K GK+ V
Sbjct: 203 QLISSGLVKVNYATTSNVSYAVGLNDLVSVRRFGRLKIVSENGISKSGKYKV 254
>gi|339624591|ref|ZP_08660380.1| hypothetical protein FfruK3_04010 [Fructobacillus fructosus KCTC
3544]
Length = 264
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 6/218 (2%)
Query: 4 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 63
+AS +++ + FL P + + D++ + G + +AE+ RL + PE
Sbjct: 28 QASQDYQLVLTHFLNPRERHIVSIIVGDRTDIQVRSYGIFDRAEKKRLVIA-PEFFEVGR 86
Query: 64 DIVAALSITGNFG--FQPCSHGDFLGSILGTGIAREKIGDIILQGEKG-AQFLVVPELAD 120
L + F F H D LG++L G+ R IGDI++ + G AQ V
Sbjct: 87 QDFEELLLQIRFAKKFINLRHKDLLGALLAAGVNRSVIGDIVVDQDLGLAQLAVEKSHQI 146
Query: 121 YLITSLEKVGNVSVSCTRIP-LLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+L +++++G V ++ AL + F I SLR+DA+ +A F +SR+++
Sbjct: 147 FLTQTVDQIGKAKVHFEQVADSKALVPAVDEEERFVLI-PSLRLDAVIAACFGISRTQVS 205
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
+IS G V VNW + D+VSV GRI++
Sbjct: 206 EMISRGFVSVNWVKNDDASRLMHRQDVVSVRKYGRIRL 243
>gi|331265956|ref|YP_004325586.1| hypothetical protein SOR_0583 [Streptococcus oralis Uo5]
gi|326682628|emb|CBZ00245.1| conserved hypothetical protein [Streptococcus oralis Uo5]
Length = 263
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRAFIPLFQD 148
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+ K+G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 149 GIRKIGRLPVSLEERPFTDRILSKIDYREREILVSSFRLDALLSSVLKLSRNQTSQLIEK 208
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
V+VN+ V K+ + GD++SV GR+KI + N T+K K
Sbjct: 209 KSVQVNYHLVEKSDYQVAVGDLISVRKIGRLKIVKDNGQTKKDK 252
>gi|425736765|ref|ZP_18855041.1| hypothetical protein C273_00160 [Staphylococcus massiliensis S46]
gi|425483237|gb|EKU50389.1| hypothetical protein C273_00160 [Staphylococcus massiliensis S46]
Length = 256
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 5/199 (2%)
Query: 34 DVKAVAQGGYP-QAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 92
D+K +GG + +R ++ + E D ++ + + I F H LG+++
Sbjct: 54 DLKVYFEGGRDSERKRALITPDYYEPQIDDFEL-SLIDIDYPKKFVTIQHQHILGTLMSL 112
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
GI RE+IGDI++ G++ QF++ +L +++ L ++ N S+ IPL + K
Sbjct: 113 GIEREQIGDILV-GDR-LQFVLTKQLESFIMFELTRIRNASIKLNSIPLEDMIQSKENWK 170
Query: 153 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
+++R+D + + SR LI V+VN T + L GD++S+ G
Sbjct: 171 VQTATVSAMRLDVVLKDMIRKSRGIAKALIEKKRVKVNHTIIEDVAFKLDEGDLLSIQGY 230
Query: 213 GRIKIGEI-NSTRKGKFAV 230
GR K+ EI + T+K K +
Sbjct: 231 GRAKVTEIGHRTKKDKLHI 249
>gi|118443110|ref|YP_878020.1| YlmH protein [Clostridium novyi NT]
gi|118133566|gb|ABK60610.1| YlmH protein, putative [Clostridium novyi NT]
Length = 261
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 106/207 (51%), Gaps = 16/207 (7%)
Query: 39 AQGGYPQAERCRLSV---GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 95
A G + +++R +S+ E + + P + + I F+ H DFLG+++ G+
Sbjct: 62 AFGIFKESDRRVISILGAYDHEEIYNYP--IELIRIDNKSTFKKLKHSDFLGALMAQGLK 119
Query: 96 REKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFK 155
REK GD+I++G+ + +++ ++I ++ K+G S I Y+ +F+
Sbjct: 120 REKFGDLIVKGD-SCYVPICSDISQFIIDNVTKIGKNPCSIKIIN----HYDGNEVPTFQ 174
Query: 156 TIE-----ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 210
E +S+R+D++ +A LSR +LI G V +N+ +TK ++ I+++
Sbjct: 175 FQEKSVVISSMRLDSIVAALSGLSRGNSEDLIKKGLVLINYDKITKRNAIVKPNSIITIR 234
Query: 211 GKGRIKIGE-INSTRKGKFAVELIQYL 236
G G+ +I E I T KG+ + + +Y+
Sbjct: 235 GYGKFRIDEYIGKTLKGRERIIIKKYI 261
>gi|386830728|ref|YP_006237382.1| hypothetical protein SAEMRSA15_10240 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|385196120|emb|CCG15739.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
Length = 268
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|417800967|ref|ZP_12448069.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21318]
gi|418886451|ref|ZP_13440599.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|418920269|ref|ZP_13474202.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC348]
gi|418991053|ref|ZP_13538714.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|334277461|gb|EGL95691.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21318]
gi|377723175|gb|EHT47300.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|377725404|gb|EHT49517.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|377765628|gb|EHT89477.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC348]
Length = 259
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249
>gi|448744994|ref|ZP_21726870.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
KT/Y21]
gi|445561703|gb|ELY17894.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
KT/Y21]
Length = 268
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|400290788|ref|ZP_10792815.1| hypothetical protein SRA_07661 [Streptococcus ratti FA-1 = DSM
20564]
gi|399921579|gb|EJN94396.1| hypothetical protein SRA_07661 [Streptococcus ratti FA-1 = DSM
20564]
Length = 262
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 7/218 (3%)
Query: 14 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD-PDI-VAALSI 71
+DFL P + M ++ D+K + +E RL + P + D D ++ L I
Sbjct: 37 TDFLNPREIA-VMKSIVGQTDLKCYVSSDFIPSEYARLLIA-PAYYSLDLADFGISLLDI 94
Query: 72 TGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
N F +H +G+++ GI R +GDI++Q E AQ V + YL + K+G
Sbjct: 95 KYNSKFNHLTHAQIMGTLINKLGIERHILGDILVQ-ENRAQVFVEKSMVSYLSIQVSKIG 153
Query: 131 NVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVN 190
+V +P TK + +S+R+D + +A K+SR LI + V+++
Sbjct: 154 RAAVIFEEVPFDRQLENQSSTKEVDILASSMRLDKIIAAVLKISRGTASKLIESEKVKLD 213
Query: 191 WTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGK 227
+ K + G+++SV G GR + N ++ GK
Sbjct: 214 YLIQPKVSHLVEVGNLISVRGYGRFTVKRDNGFSKHGK 251
>gi|148267683|ref|YP_001246626.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus JH9]
gi|150393741|ref|YP_001316416.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus JH1]
gi|253314955|ref|ZP_04838168.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|255005978|ref|ZP_05144579.2| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257795753|ref|ZP_05644732.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9781]
gi|258415977|ref|ZP_05682247.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9763]
gi|258419724|ref|ZP_05682691.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9719]
gi|258438766|ref|ZP_05689919.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9299]
gi|258444528|ref|ZP_05692857.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8115]
gi|258447639|ref|ZP_05695783.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A6300]
gi|258454860|ref|ZP_05702824.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A5937]
gi|269202806|ref|YP_003282075.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
ED98]
gi|282892677|ref|ZP_06300912.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8117]
gi|282929236|ref|ZP_06336811.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A10102]
gi|295407129|ref|ZP_06816930.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8819]
gi|296276133|ref|ZP_06858640.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
MR1]
gi|297245985|ref|ZP_06929844.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8796]
gi|384864418|ref|YP_005749777.1| S4 domain-containing protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|415691038|ref|ZP_11453277.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
CGS03]
gi|417651228|ref|ZP_12300991.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21172]
gi|417893418|ref|ZP_12537447.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21201]
gi|418424329|ref|ZP_12997452.1| hypothetical protein MQA_02001 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427326|ref|ZP_13000338.1| hypothetical protein MQC_00032 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418430167|ref|ZP_13003083.1| hypothetical protein MQE_00031 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418433128|ref|ZP_13005908.1| hypothetical protein MQG_01683 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418436803|ref|ZP_13008605.1| hypothetical protein MQI_00624 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418439674|ref|ZP_13011382.1| hypothetical protein MQK_01343 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418442727|ref|ZP_13014329.1| hypothetical protein MQM_00279 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418445786|ref|ZP_13017262.1| hypothetical protein MQO_00032 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418448730|ref|ZP_13020122.1| hypothetical protein MQQ_00804 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451554|ref|ZP_13022888.1| hypothetical protein MQS_00032 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454610|ref|ZP_13025872.1| hypothetical protein MQU_00497 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457486|ref|ZP_13028689.1| hypothetical protein MQW_00324 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418568958|ref|ZP_13133298.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21272]
gi|418654785|ref|ZP_13216681.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-99]
gi|418663139|ref|ZP_13224664.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-122]
gi|418878041|ref|ZP_13432276.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|418880868|ref|ZP_13435087.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|418883797|ref|ZP_13437992.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|418914288|ref|ZP_13468260.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC340D]
gi|424768621|ref|ZP_18195885.1| S4 domain protein [Staphylococcus aureus subsp. aureus CM05]
gi|443637330|ref|ZP_21121412.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21236]
gi|147740752|gb|ABQ49050.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
JH9]
gi|149946193|gb|ABR52129.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
JH1]
gi|257789725|gb|EEV28065.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9781]
gi|257839313|gb|EEV63787.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9763]
gi|257844309|gb|EEV68691.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9719]
gi|257848025|gb|EEV72018.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A9299]
gi|257850021|gb|EEV73974.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8115]
gi|257853830|gb|EEV76789.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A6300]
gi|257863243|gb|EEV86007.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A5937]
gi|262075096|gb|ACY11069.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
ED98]
gi|282589195|gb|EFB94292.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A10102]
gi|282764674|gb|EFC04799.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8117]
gi|294967982|gb|EFG44010.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8819]
gi|297177149|gb|EFH36403.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
A8796]
gi|312829585|emb|CBX34427.1| S4 domain protein [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315130982|gb|EFT86966.1| RNA-binding S4 domain protein [Staphylococcus aureus subsp. aureus
CGS03]
gi|329727412|gb|EGG63868.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21172]
gi|341854803|gb|EGS95665.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21201]
gi|371978143|gb|EHO95393.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21272]
gi|375014610|gb|EHS08291.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-99]
gi|375034772|gb|EHS27922.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-122]
gi|377694163|gb|EHT18528.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|377714884|gb|EHT39082.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|377731761|gb|EHT55814.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|377757790|gb|EHT81678.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC340D]
gi|387718562|gb|EIK06520.1| hypothetical protein MQE_00031 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718913|gb|EIK06869.1| hypothetical protein MQC_00032 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387720632|gb|EIK08539.1| hypothetical protein MQA_02001 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387725794|gb|EIK13392.1| hypothetical protein MQG_01683 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387727907|gb|EIK15407.1| hypothetical protein MQI_00624 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730777|gb|EIK18135.1| hypothetical protein MQK_01343 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735714|gb|EIK22824.1| hypothetical protein MQO_00032 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387737392|gb|EIK24458.1| hypothetical protein MQM_00279 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387737946|gb|EIK25000.1| hypothetical protein MQQ_00804 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387744435|gb|EIK31199.1| hypothetical protein MQS_00032 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745725|gb|EIK32475.1| hypothetical protein MQU_00497 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387747218|gb|EIK33927.1| hypothetical protein MQW_00324 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|402348512|gb|EJU83498.1| S4 domain protein [Staphylococcus aureus subsp. aureus CM05]
gi|408423395|emb|CCJ10806.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408425385|emb|CCJ12772.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408427373|emb|CCJ14736.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408429360|emb|CCJ26525.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408431348|emb|CCJ18663.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408433342|emb|CCJ20627.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408435333|emb|CCJ22593.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|408437318|emb|CCJ24561.1| S4 domain protein [Staphylococcus aureus subsp. aureus ST228]
gi|443405911|gb|ELS64501.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21236]
Length = 268
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|57651761|ref|YP_186067.1| YlmH protein [Staphylococcus aureus subsp. aureus COL]
gi|385781418|ref|YP_005757589.1| S4 domain-containing protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|417796572|ref|ZP_12443780.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21305]
gi|417898905|ref|ZP_12542818.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21259]
gi|418570819|ref|ZP_13135080.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21283]
gi|418574683|ref|ZP_13138850.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21333]
gi|418642798|ref|ZP_13204984.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-24]
gi|418647698|ref|ZP_13209761.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-88]
gi|418649586|ref|ZP_13211614.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-91]
gi|418873533|ref|ZP_13427828.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-125]
gi|418875125|ref|ZP_13429385.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|418906125|ref|ZP_13460152.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC345D]
gi|418911796|ref|ZP_13465779.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG547]
gi|418928447|ref|ZP_13482333.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|418934090|ref|ZP_13487914.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC128]
gi|418988012|ref|ZP_13535685.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|419775309|ref|ZP_14301251.1| S4 domain protein [Staphylococcus aureus subsp. aureus CO-23]
gi|57285947|gb|AAW38041.1| YlmH protein [Staphylococcus aureus subsp. aureus COL]
gi|334268562|gb|EGL86996.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21305]
gi|341847188|gb|EGS88373.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21259]
gi|364522407|gb|AEW65157.1| S4 domain protein [Staphylococcus aureus subsp. aureus 11819-97]
gi|371978814|gb|EHO96055.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21333]
gi|371982999|gb|EHP00147.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21283]
gi|375015911|gb|EHS09555.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-24]
gi|375029408|gb|EHS22736.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-88]
gi|375029959|gb|EHS23284.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-91]
gi|375366070|gb|EHS70082.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-125]
gi|377719800|gb|EHT43970.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|377725174|gb|EHT49289.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG547]
gi|377738359|gb|EHT62368.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|377765425|gb|EHT89275.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC345D]
gi|377770185|gb|EHT93947.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|377771870|gb|EHT95624.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIGC128]
gi|383970993|gb|EID87083.1| S4 domain protein [Staphylococcus aureus subsp. aureus CO-23]
Length = 259
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249
>gi|418643756|ref|ZP_13205914.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-55]
gi|421150074|ref|ZP_15609730.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|443640103|ref|ZP_21124100.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21196]
gi|375028054|gb|EHS21410.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-55]
gi|394329464|gb|EJE55566.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|443405850|gb|ELS64441.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21196]
Length = 259
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249
>gi|23098937|ref|NP_692403.1| hypothetical protein OB1482 [Oceanobacillus iheyensis HTE831]
gi|22777165|dbj|BAC13438.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 258
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 109/222 (49%), Gaps = 8/222 (3%)
Query: 14 SDFLTPPVLKESMMAL--EKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALS 70
+DFL P +E + +L E +++ GG ++ER R+ + E +T D + L
Sbjct: 34 TDFLDPRE-QEIVTSLIGEHNEELQVRGFGGSNKSERSRMILAPKYEEITEDMFQIQLLE 92
Query: 71 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVG 130
F H D +G+ L GI R+K+GDII++ K Q + E++ ++ +L +
Sbjct: 93 ANFQPKFVMIEHPDVMGAFLSQGIKRKKLGDIIIEDGK-IQIIAASEISPFVQMNLTSIR 151
Query: 131 NVSVSCTRIPL-LALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
SV + L L ++ + KT+ +SLR+D + + LSR + I G V+V
Sbjct: 152 KSSVHFEQKDLQLLIKKNETWIERDKTV-SSLRLDTVIKEIYPLSRKEATVFIQKGLVKV 210
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
N+ V N L+ D++S+ G GR K+ I ++K K +
Sbjct: 211 NYKLVDDNKFQLQEKDMISIRGHGRSKLTSIRGKSKKDKVKI 252
>gi|21282803|ref|NP_645891.1| hypothetical protein MW1074 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486031|ref|YP_043252.1| hypothetical protein SAS1125 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|87159985|ref|YP_493782.1| hypothetical protein SAUSA300_1085 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194897|ref|YP_499697.1| hypothetical protein SAOUHSC_01156 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|161509365|ref|YP_001575024.1| hypothetical protein USA300HOU_1128 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221140637|ref|ZP_03565130.1| hypothetical protein SauraJ_03241 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253733570|ref|ZP_04867735.1| ribosomal protein S4e [Staphylococcus aureus subsp. aureus TCH130]
gi|258451889|ref|ZP_05699910.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|282919972|ref|ZP_06327701.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|284024115|ref|ZP_06378513.1| hypothetical protein Saura13_05969 [Staphylococcus aureus subsp.
aureus 132]
gi|294848184|ref|ZP_06788931.1| hypothetical protein SKAG_00243 [Staphylococcus aureus A9754]
gi|297208167|ref|ZP_06924597.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300912245|ref|ZP_07129688.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus TCH70]
gi|379014382|ref|YP_005290618.1| hypothetical protein SAVC_05120 [Staphylococcus aureus subsp.
aureus VC40]
gi|384861785|ref|YP_005744505.1| S4 RNA binding domain protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|384869724|ref|YP_005752438.1| MW1074 protein [Staphylococcus aureus subsp. aureus T0131]
gi|415688517|ref|ZP_11452207.1| hypothetical protein CGSSa01_04105 [Staphylococcus aureus subsp.
aureus CGS01]
gi|417650017|ref|ZP_12299797.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21189]
gi|417655639|ref|ZP_12305349.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21193]
gi|417901463|ref|ZP_12545339.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21266]
gi|418280910|ref|ZP_12893732.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21178]
gi|418286371|ref|ZP_12899017.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21209]
gi|418316104|ref|ZP_12927548.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21340]
gi|418321928|ref|ZP_12933267.1| S4 domain protein [Staphylococcus aureus subsp. aureus VCU006]
gi|418579021|ref|ZP_13143116.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|418657802|ref|ZP_13219557.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-111]
gi|418903399|ref|ZP_13457440.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|418925423|ref|ZP_13479325.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|422743419|ref|ZP_16797403.1| S4 domain protein [Staphylococcus aureus subsp. aureus MRSA177]
gi|422745579|ref|ZP_16799518.1| S4 domain protein [Staphylococcus aureus subsp. aureus MRSA131]
gi|424785020|ref|ZP_18211823.1| hypothetical protein CN79_1133 [Staphylococcus aureus CN79]
gi|440708384|ref|ZP_20889050.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21282]
gi|440734636|ref|ZP_20914248.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|448740325|ref|ZP_21722305.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
KT/314250]
gi|21204241|dbj|BAB94939.1| MW1074 [Staphylococcus aureus subsp. aureus MW2]
gi|49244474|emb|CAG42902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|87125959|gb|ABD20473.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202455|gb|ABD30265.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|160368174|gb|ABX29145.1| hypothetical protein USA300HOU_1128 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253728440|gb|EES97169.1| ribosomal protein S4e [Staphylococcus aureus subsp. aureus TCH130]
gi|257860497|gb|EEV83324.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|282594688|gb|EFB99672.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|294824984|gb|EFG41406.1| hypothetical protein SKAG_00243 [Staphylococcus aureus A9754]
gi|296886906|gb|EFH25809.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300886491|gb|EFK81693.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus TCH70]
gi|302751014|gb|ADL65191.1| S4 RNA binding domain protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|315196921|gb|EFU27264.1| hypothetical protein CGSSa01_04105 [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140994|gb|EFW32841.1| S4 domain protein [Staphylococcus aureus subsp. aureus MRSA131]
gi|320143050|gb|EFW34840.1| S4 domain protein [Staphylococcus aureus subsp. aureus MRSA177]
gi|329313859|gb|AEB88272.1| MW1074 protein [Staphylococcus aureus subsp. aureus T0131]
gi|329725026|gb|EGG61522.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21189]
gi|329728857|gb|EGG65278.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21193]
gi|341845302|gb|EGS86504.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21266]
gi|365167011|gb|EHM58488.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21178]
gi|365167079|gb|EHM58555.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21209]
gi|365224543|gb|EHM65808.1| S4 domain protein [Staphylococcus aureus subsp. aureus VCU006]
gi|365241775|gb|EHM82510.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21340]
gi|374363079|gb|AEZ37184.1| hypothetical protein SAVC_05120 [Staphylococcus aureus subsp.
aureus VC40]
gi|375039966|gb|EHS32876.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-111]
gi|377697048|gb|EHT21403.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|377742414|gb|EHT66399.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|377744492|gb|EHT68469.1| S4 domain protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|421956430|gb|EKU08759.1| hypothetical protein CN79_1133 [Staphylococcus aureus CN79]
gi|436431664|gb|ELP29017.1| S4 domain-containing protein YlmH [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436504967|gb|ELP40928.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21282]
gi|445548970|gb|ELY17216.1| RNA-binding S4 domain-containing protein [Staphylococcus aureus
KT/314250]
Length = 268
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|417656664|ref|ZP_12306347.1| S4 domain protein [Staphylococcus epidermidis VCU028]
gi|418664785|ref|ZP_13226251.1| S4 domain protein [Staphylococcus epidermidis VCU081]
gi|419772576|ref|ZP_14298607.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-K]
gi|329736325|gb|EGG72597.1| S4 domain protein [Staphylococcus epidermidis VCU028]
gi|374410231|gb|EHQ80992.1| S4 domain protein [Staphylococcus epidermidis VCU081]
gi|383359203|gb|EID36633.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-K]
Length = 220
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 7/201 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILG 91
D+ GG P AER R + P P+ + F H LG+++
Sbjct: 18 DLHVTFFGG-PHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMS 75
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDII+ GE QF++ +L Y+I L ++ SV IP +
Sbjct: 76 LGIQRDQLGDIIV-GE-DIQFVLTKQLESYIIFELTRIKGASVKLNSIPTEDMIQSEENW 133
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K T ++LR+D + SR+ LI V+VN T + L D++S+ G
Sbjct: 134 KVHSTTVSALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTIIDSTDFQLEQNDLLSIQG 193
Query: 212 KGRIKIGEI-NSTRKGKFAVE 231
GR +I EI T+K K +
Sbjct: 194 YGRAQIVEIGGKTKKNKLHIH 214
>gi|15924181|ref|NP_371715.1| hypothetical protein SAV1191 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926774|ref|NP_374307.1| hypothetical protein SA1034 [Staphylococcus aureus subsp. aureus
N315]
gi|156979512|ref|YP_001441771.1| hypothetical protein SAHV_1181 [Staphylococcus aureus subsp. aureus
Mu3]
gi|387150334|ref|YP_005741898.1| hypothetical protein SA2981_1149 [Staphylococcus aureus 04-02981]
gi|13700990|dbj|BAB42286.1| SA1034 [Staphylococcus aureus subsp. aureus N315]
gi|14246961|dbj|BAB57353.1| YlmH [Staphylococcus aureus subsp. aureus Mu50]
gi|156721647|dbj|BAF78064.1| hypothetical protein SAHV_1181 [Staphylococcus aureus subsp. aureus
Mu3]
gi|285816873|gb|ADC37360.1| hypothetical protein, contains S4-like RNA binding domain
[Staphylococcus aureus 04-02981]
Length = 212
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 10 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 67
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 68 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 125
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 126 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 185
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 186 FGRAHITDLGGKTKKDK 202
>gi|57866705|ref|YP_188339.1| hypothetical protein SERP0756 [Staphylococcus epidermidis RP62A]
gi|242242473|ref|ZP_04796918.1| ribosomal protein S4e [Staphylococcus epidermidis W23144]
gi|416124405|ref|ZP_11595401.1| S4 domain protein [Staphylococcus epidermidis FRI909]
gi|418329263|ref|ZP_12940342.1| S4 domain protein [Staphylococcus epidermidis 14.1.R1.SE]
gi|418612922|ref|ZP_13175943.1| S4 domain protein [Staphylococcus epidermidis VCU117]
gi|418613978|ref|ZP_13176968.1| S4 domain protein [Staphylococcus epidermidis VCU118]
gi|418626822|ref|ZP_13189418.1| S4 domain protein [Staphylococcus epidermidis VCU126]
gi|418631931|ref|ZP_13194375.1| S4 domain protein [Staphylococcus epidermidis VCU128]
gi|418634097|ref|ZP_13196495.1| S4 domain protein [Staphylococcus epidermidis VCU129]
gi|420175040|ref|ZP_14681485.1| YlmH protein [Staphylococcus epidermidis NIHLM061]
gi|420189636|ref|ZP_14695604.1| YlmH protein [Staphylococcus epidermidis NIHLM037]
gi|420192785|ref|ZP_14698642.1| YlmH protein [Staphylococcus epidermidis NIHLM023]
gi|420204113|ref|ZP_14709673.1| YlmH protein [Staphylococcus epidermidis NIHLM015]
gi|420234350|ref|ZP_14738914.1| S4 domain protein [Staphylococcus epidermidis NIH051475]
gi|57637363|gb|AAW54151.1| ylmH protein [Staphylococcus epidermidis RP62A]
gi|242234047|gb|EES36359.1| ribosomal protein S4e [Staphylococcus epidermidis W23144]
gi|319401515|gb|EFV89725.1| S4 domain protein [Staphylococcus epidermidis FRI909]
gi|365230925|gb|EHM72000.1| S4 domain protein [Staphylococcus epidermidis 14.1.R1.SE]
gi|374817232|gb|EHR81417.1| S4 domain protein [Staphylococcus epidermidis VCU117]
gi|374821847|gb|EHR85888.1| S4 domain protein [Staphylococcus epidermidis VCU118]
gi|374831366|gb|EHR95108.1| S4 domain protein [Staphylococcus epidermidis VCU126]
gi|374833600|gb|EHR97275.1| S4 domain protein [Staphylococcus epidermidis VCU128]
gi|374838089|gb|EHS01646.1| S4 domain protein [Staphylococcus epidermidis VCU129]
gi|394244326|gb|EJD89671.1| YlmH protein [Staphylococcus epidermidis NIHLM061]
gi|394260601|gb|EJE05410.1| YlmH protein [Staphylococcus epidermidis NIHLM023]
gi|394260971|gb|EJE05773.1| YlmH protein [Staphylococcus epidermidis NIHLM037]
gi|394274127|gb|EJE18552.1| YlmH protein [Staphylococcus epidermidis NIHLM015]
gi|394304312|gb|EJE47718.1| S4 domain protein [Staphylococcus epidermidis NIH051475]
Length = 220
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 7/201 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILG 91
D+ GG P AER R + P P+ + F H LG+++
Sbjct: 18 DLHVTFFGG-PHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMS 75
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDII+ GE QF++ +L Y+I+ L ++ +V IP +
Sbjct: 76 LGIQRDQLGDIIV-GE-DIQFVLTKQLESYIISELTRIKGATVKLNSIPTEDMIQSEENW 133
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K T ++LR+D + SR+ LI V+VN T + L D++S+ G
Sbjct: 134 KVHSTTVSALRLDVVLKEIIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSIQG 193
Query: 212 KGRIKIGEI-NSTRKGKFAVE 231
GR +I EI T+K K +
Sbjct: 194 YGRAQIVEIGGKTKKNKLHIH 214
>gi|422940293|ref|ZP_16967632.1| RNA binding protein [Fusobacterium nucleatum subsp. animalis ATCC
51191]
gi|339890036|gb|EGQ79226.1| RNA binding protein [Fusobacterium nucleatum subsp. animalis ATCC
51191]
Length = 241
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 17/214 (7%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFL 86
K + +K +G E+ L+V +PE + D P V I F H +L
Sbjct: 37 KYSGMKFSFKGLNEDCEKKLLAV-YPEYFSEDYLYFP--VKYFKIIKKSKFINLEHKHYL 93
Query: 87 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 146
G+ILG GI RE +GD+I++ ++ +++ + D+L +L ++ + V I E
Sbjct: 94 GNILGLGIKREILGDLIVKNDECYG-IILENMFDFLKENLLRINSSPVEIIEIG----EN 148
Query: 147 EPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRT 203
E P+ + FK + +SLR+D+L S LSR+ VN I G+V+VN+ + +
Sbjct: 149 EVPQNE-FKELNIRLSSLRLDSLVSELTNLSRASSVNYIDLGNVQVNYEIQREKSYRISV 207
Query: 204 GDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
GD V + G+ +I E N T+K K + + +Y+
Sbjct: 208 GDTVIIKKYGKFRIEEENGLTKKDKVKLIVRKYI 241
>gi|418144609|ref|ZP_12781404.1| hypothetical protein SPAR31_1807 [Streptococcus pneumoniae GA13494]
gi|353807075|gb|EHD87347.1| hypothetical protein SPAR31_1807 [Streptococcus pneumoniae GA13494]
Length = 259
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 109/225 (48%), Gaps = 14/225 (6%)
Query: 13 HSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP P ++ + L K + ++ G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACISSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEYLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI----GEINSTRKG 226
V+VN+ V K+ T++ GD++SV GR+++ G+ RK
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLLQDKGQTKKRRKN 252
>gi|262048764|ref|ZP_06021646.1| hypothetical protein SAD30_1594 [Staphylococcus aureus D30]
gi|262051690|ref|ZP_06023909.1| hypothetical protein SA930_1517 [Staphylococcus aureus 930918-3]
gi|259160425|gb|EEW45450.1| hypothetical protein SA930_1517 [Staphylococcus aureus 930918-3]
gi|259163220|gb|EEW47780.1| hypothetical protein SAD30_1594 [Staphylococcus aureus D30]
Length = 212
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 10 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIDYPEKFVTLKHQHILGTLMS 67
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 68 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 125
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 126 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 185
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 186 FGRAHITDLGGKTKKDK 202
>gi|417941038|ref|ZP_12584325.1| S4 domain protein [Streptococcus oralis SK313]
gi|343388331|gb|EGV00917.1| S4 domain protein [Streptococcus oralis SK313]
Length = 252
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLIT 124
+A L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 90 MALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQD 148
Query: 125 SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISN 184
+ ++G + VS P + + + +S R+DAL S+ KLSR++ LI
Sbjct: 149 GIRRIGRLPVSLEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTSQLIEK 208
Query: 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
V+VN+ V K+ + GD++SV GR+K+ + N K
Sbjct: 209 KSVQVNYHLVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTK 249
>gi|322392783|ref|ZP_08066241.1| S4 domain-containing protein YlmH [Streptococcus peroris ATCC
700780]
gi|321144361|gb|EFX39764.1| S4 domain-containing protein YlmH [Streptococcus peroris ATCC
700780]
Length = 261
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 7/230 (3%)
Query: 13 HSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAA 68
++ LTP + + LE L ++K + Y +E R+ + S D +A
Sbjct: 31 YAPILTPFINPHQVYILETLGNNREIKTFSSTSYVPSEYARVLLAPDYFAPSLEDFEMAL 90
Query: 69 LSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLE 127
L I + FQ +H LG++L GI R+ GDI++ E+ AQ +V ++
Sbjct: 91 LEIEYSSKFQQLTHSKILGTVLNRLGIDRKLFGDILV-TEQKAQIIVDQRFTTLFQDGIQ 149
Query: 128 KVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDV 187
K+ + VS + + + + +SLR+D+ S+ KLSRS+ NL+ V
Sbjct: 150 KISKLPVSLVERSFSDIIKSKDGYQEREVLVSSLRLDSFLSSILKLSRSQTSNLVEKKLV 209
Query: 188 RVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVELIQYL 236
+VN+ V K ++ GD++SV GRI + + N T+K K V + Q L
Sbjct: 210 QVNYHIVEKLDYQVKVGDLISVRRFGRIILLKENGQTKKDKKKVTIQQLL 259
>gi|242373477|ref|ZP_04819051.1| ribosomal protein S4e [Staphylococcus epidermidis M23864:W1]
gi|242348840|gb|EES40442.1| ribosomal protein S4e [Staphylococcus epidermidis M23864:W1]
Length = 259
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 7/200 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R ++ + E D +I + L I F H LG+++
Sbjct: 57 DLNVTYNGG-PHAERKRAIIAPSYYEPQEEDYEI-SLLQIDYPEKFVNIQHQHVLGTLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI R+++GDI++ E QF++ L Y++ L ++ +V IP+ +
Sbjct: 115 LGIERDQLGDIMIGDE--IQFILTKRLESYIMFELTRIKGATVKLNSIPIKDMIQSEENW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K ++LR+D + + SR+ LI V+VN T V L D++S+ G
Sbjct: 173 KIQSATVSALRLDVVLKDMIRKSRNIAKQLIEKKRVKVNHTIVDTPDFQLEKNDLLSIQG 232
Query: 212 KGRIKIGEI-NSTRKGKFAV 230
GR +I EI T+K K +
Sbjct: 233 FGRAQITEIGGRTKKDKLHI 252
>gi|401684481|ref|ZP_10816360.1| S4 domain protein [Streptococcus sp. BS35b]
gi|418974565|ref|ZP_13522475.1| S4 domain protein [Streptococcus oralis SK1074]
gi|383348992|gb|EID26944.1| S4 domain protein [Streptococcus oralis SK1074]
gi|400185725|gb|EJO19951.1| S4 domain protein [Streptococcus sp. BS35b]
Length = 263
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 13/234 (5%)
Query: 8 RREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRLSVGHPEALTSDPD 64
R E ++ LTP + L LA + + G + E R+ + +P+ +P+
Sbjct: 28 RVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLL-YPDYF--EPE 84
Query: 65 I----VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELA 119
I + L I F+ SHG LG+I+ GI R+ GDI++ EK AQ V +
Sbjct: 85 ISDFEMTLLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFI 143
Query: 120 DYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLV 179
+ ++G + VS P + + + +S R+DAL S+ KLSR++
Sbjct: 144 PLFQDGIRRIGRLPVSLEERPFTDRIISKIDFREREILVSSFRLDALLSSALKLSRNQTS 203
Query: 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAVEL 232
LI V+VN+ V K+ + GD++SV GR+K+ + N T+K K + +
Sbjct: 204 QLIEKKSVQVNYHLVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDKIKLSI 257
>gi|417895603|ref|ZP_12539585.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21235]
gi|341841500|gb|EGS82957.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21235]
Length = 210
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 8 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLIEIDYPEKFITLKHQHILGTLMS 65
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 66 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 123
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 124 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 183
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 184 FGRAHITDLGGKTKKDK 200
>gi|312867091|ref|ZP_07727301.1| S4 domain protein [Streptococcus parasanguinis F0405]
gi|311097220|gb|EFQ55454.1| S4 domain protein [Streptococcus parasanguinis F0405]
Length = 263
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 106/237 (44%), Gaps = 13/237 (5%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPE 57
++ R R V + FL P + L +A ++ A + E ++ V P+
Sbjct: 24 LSERVVERYSVEVTGFLNP----HQVTILRNVAASYQLQVFASSDEQKMEYAKVIVA-PD 78
Query: 58 ALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLV 114
DP D +A L + F +H LG+I+ G+ R+ GDI L + Q V
Sbjct: 79 YYQLDPSDFDLALLEMVYASKFHHLTHSQVLGTIVHQLGVERKSFGDI-LTSDGKIQVFV 137
Query: 115 VPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLS 174
Y + ++K+ V V +PL ++ + +S R+D + + FKLS
Sbjct: 138 EQRFVPYFMDHIQKISRVPVKLREVPLSEQMIVEEESQQRDILVSSYRLDKVIAGTFKLS 197
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRK-GKFAV 230
RS+ LIS+G V+VN+ T + + D+VSV GR+KI N K GK+ V
Sbjct: 198 RSQASQLISSGLVKVNYATTSNVSYAVGLNDLVSVRRFGRLKIVSENGISKSGKYKV 254
>gi|19703517|ref|NP_603079.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19713607|gb|AAL94378.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 241
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFL 86
K + +K +G + E+ L+V +PE T D P V I F H +L
Sbjct: 37 KYSGLKFSFKGLNEECEKKLLAV-YPECFTEDYLYFP--VKYFKIIKKSKFISLEHKHYL 93
Query: 87 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 146
G+IL GI RE +GD+I++ ++ +++ + D+L +L ++ + V I E
Sbjct: 94 GNILSLGIKREILGDLIVKNDECYG-IILENMFDFLKENLLRINSSPVEIIEID----ER 148
Query: 147 EPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRT 203
E P + FK + +SLR+D+L S LSR+ VN I G+V+VN+ + +
Sbjct: 149 EVPENE-FKELNIRLSSLRLDSLVSELTNLSRAVSVNYIDLGNVQVNYEIQREKSYKVSL 207
Query: 204 GDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
GD + + G+ +I E N T+K K + + +Y+
Sbjct: 208 GDTIIIKKYGKFRIEEENGLTKKDKLKLIVRKYI 241
>gi|405760467|ref|YP_006701063.1| hypothetical protein SPNA45_00579 [Streptococcus pneumoniae SPNA45]
gi|404277356|emb|CCM07867.1| conserved hypothetical protein [Streptococcus pneumoniae SPNA45]
Length = 261
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 8/208 (3%)
Query: 16 FLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCR--LSVGHPEALTSDPDIVAALS 70
FLTP + L+ LA +A G + +E R L + + + SD +I
Sbjct: 34 FLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLLYLDYFQPEFSDFEISLQEI 93
Query: 71 ITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ + L+K+
Sbjct: 94 VYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDGLKKI 151
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
G + VS P + + + +S R+DAL S KLSR++ LI V+V
Sbjct: 152 GRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDALLSNVLKLSRNQANQLIERKLVQV 211
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
N+ V K+ T++ GD++SV GR+++
Sbjct: 212 NYHVVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|306829909|ref|ZP_07463096.1| S4 domain-containing protein YlmH [Streptococcus mitis ATCC 6249]
gi|304427920|gb|EFM31013.1| S4 domain-containing protein YlmH [Streptococcus mitis ATCC 6249]
Length = 263
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 77 FQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVS 135
F+ SHG LG+I+ GI R+ GDI++ EK AQ V + + K+G + VS
Sbjct: 101 FEQLSHGKILGTIINQLGIDRKLFGDILV-DEKRAQIFVNRDFIPLFQDGIIKIGRLPVS 159
Query: 136 CTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVT 195
P + + + +S R+DAL S+ KLSR++ LI V+VN+ V
Sbjct: 160 LEERPFTDRIKSKIDYREREILVSSFRLDALLSSALKLSRNQTSQLIEKKSVQVNYHVVE 219
Query: 196 KNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
K + GD++SV GR+K+ + N T+K K
Sbjct: 220 KTDYQVAVGDLISVRKFGRLKVVKDNGQTKKDK 252
>gi|313114069|ref|ZP_07799621.1| S4 domain protein [Faecalibacterium cf. prausnitzii KLE1255]
gi|310623478|gb|EFQ06881.1| S4 domain protein [Faecalibacterium cf. prausnitzii KLE1255]
Length = 272
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 4/200 (2%)
Query: 40 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 99
+GG+ AER L + + P L G +H D+LGS++G + RE +
Sbjct: 73 EGGWLNAERRVLCIEPEYSCGEAPICCVRLQCRAQAGAALPAHKDYLGSLMGLELRREAL 132
Query: 100 GDIIL-QGEKGAQFLVVPELADYLIT-SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI 157
GDI+L + + G ++ E A LI L +VG+ ++ + L + P + +
Sbjct: 133 GDIVLPEDQPGTAYVFALEPAAQLICRELFQVGHTELTTELLTLDEVPQFPQAEREMHSA 192
Query: 158 E-ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
+SLR+DA+ +A SR + LI G V +N K + GD+ +V GKGR
Sbjct: 193 TVSSLRLDAVLAAMLHCSRGQASELIEAGRVEINHLPADKPHAQVYEGDVFTVRGKGRFN 252
Query: 217 IGEI-NSTRKGKFAVELIQY 235
+ + +RK + +E QY
Sbjct: 253 LTALPGKSRKDRSIIEFFQY 272
>gi|419785578|ref|ZP_14311330.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-M]
gi|383362548|gb|EID39899.1| S4 domain protein [Staphylococcus aureus subsp. aureus IS-M]
Length = 273
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 7/205 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD ++ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFEL-TLMEIEYPEKFVTLKHQHILGTLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K+ +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 173 KNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232
Query: 212 KGRIKIGEI-NSTRKGKFAVELIQY 235
GR I ++ T+K K + + Y
Sbjct: 233 FGRAHITDLGGKTKKIKRTLPIEHY 257
>gi|149001946|ref|ZP_01826900.1| YlmH protein [Streptococcus pneumoniae SP14-BS69]
gi|419458251|ref|ZP_13998193.1| hypothetical protein SPAR1_1705 [Streptococcus pneumoniae GA02254]
gi|147759755|gb|EDK66745.1| YlmH protein [Streptococcus pneumoniae SP14-BS69]
gi|379529915|gb|EHY95156.1| hypothetical protein SPAR1_1705 [Streptococcus pneumoniae GA02254]
Length = 261
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 10/212 (4%)
Query: 13 HSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP P ++ + L K + ++ G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACISSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEYLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|418606280|ref|ZP_13169568.1| DivIVA protein [Staphylococcus epidermidis VCU057]
gi|374408673|gb|EHQ79485.1| DivIVA protein [Staphylococcus epidermidis VCU057]
Length = 446
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 5/186 (2%)
Query: 42 GYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKI 99
G P AER R + P P+ + F H LG+++ GI R+++
Sbjct: 25 GGPHAERKRAIIA-PLYFKPQPEDFELTLFELQYPKKFVTIQHQHVLGTLMSLGIQRDQL 83
Query: 100 GDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA 159
GDII+ GE QF++ +L Y+I+ L ++ SV IP + K T +
Sbjct: 84 GDIIV-GE-DIQFVLTKQLESYIISELTRIKGASVKLNSIPTEDMIQSEENWKVHSTTVS 141
Query: 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
+LR+D + SR+ LI V+VN T + L D++S+ G GR +I E
Sbjct: 142 ALRLDVVLKEMIHKSRNIAQQLIIKKRVKVNHTIIDSTDFQLEQNDLLSIQGYGRAQIVE 201
Query: 220 INSTRK 225
I +K
Sbjct: 202 IGGKQK 207
>gi|296328063|ref|ZP_06870597.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|296154839|gb|EFG95622.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 241
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFL 86
K + +K +G E+ L+V +PE T D P V I F H +L
Sbjct: 37 KYSGIKFSFKGLNEDCEKKLLAV-YPECFTEDYLYFP--VKYFKIIKKSKFISLEHKHYL 93
Query: 87 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 146
G+IL GI RE +GD+I++ ++ +++ + D+L +L ++ + V I E
Sbjct: 94 GNILSLGIKREILGDLIVKNDECYG-IILENMFDFLKENLLRINSSPVEIIEID----EK 148
Query: 147 EPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRT 203
E P+ + FK + +SLR+D+L S LSR+ VN I G+V+VN+ + +
Sbjct: 149 EVPQNE-FKELNIRLSSLRLDSLVSELTNLSRALSVNYIDLGNVQVNYEIQREKSYKVSI 207
Query: 204 GDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
GD + + G+ KI + N T+K K + + +Y+
Sbjct: 208 GDTIIIKKYGKFKIEKENGLTKKDKLKLIVRKYI 241
>gi|258423765|ref|ZP_05686651.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|418307404|ref|ZP_12919117.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21194]
gi|257845997|gb|EEV70025.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|365245671|gb|EHM86287.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21194]
Length = 268
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P ER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNVERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|302874637|ref|YP_003843270.1| RNA binding protein [Clostridium cellulovorans 743B]
gi|307690751|ref|ZP_07633197.1| RNA binding protein [Clostridium cellulovorans 743B]
gi|302577494|gb|ADL51506.1| RNA binding protein [Clostridium cellulovorans 743B]
Length = 255
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 66 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP---ELADYL 122
V L I + FQ H D+LGSI+ GI R K+GD+I+ VP ++A Y+
Sbjct: 86 VKVLLIKTSNKFQRVEHKDYLGSIMSLGIKRSKLGDLIVID----NLCYVPCTEDIASYI 141
Query: 123 ITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTI--EASLRVDALASAGFKLSRSKLVN 180
I S+ K+ N +I +L+ P + + + SLRVD++ S +SRSK ++
Sbjct: 142 IDSISKIKNTPC---KIEILSSYDNLPEYQYDELVITTTSLRVDSVVSGITGISRSKGLS 198
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVELIQY 235
+S+G + +N++ V + TGD +++ G+ I E I T+ G+ V+++++
Sbjct: 199 ALSSGGILLNYSAVYDKSKLVSTGDTLTLRTYGKFSIKEIIGETKSGRLKVKVLKF 254
>gi|429220512|ref|YP_007182156.1| hypothetical protein Deipe_2933 [Deinococcus peraridilitoris DSM
19664]
gi|429131375|gb|AFZ68390.1| hypothetical protein Deipe_2933 [Deinococcus peraridilitoris DSM
19664]
Length = 236
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 15/224 (6%)
Query: 11 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 70
V+ + FL + ++ E +++++ GG+P A R L++ +P + S V+ L
Sbjct: 22 VVRTGFLDADSIDRRILQDE---EIRSLIAGGFPDARRVLLTL-YPAHIPSVDSGVSVLR 77
Query: 71 ITGNFGFQPCSH-GDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKV 129
+ G F +P DF ++ + E++GD L+ E+GA L V A + SL +
Sbjct: 78 VIGEF--RPDFEVQDFAVALKQLALPEEQLGD--LREERGAFLLAVTGKAKSTLLSLGTL 133
Query: 130 GNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
N + I E K+ + + SLRVD + + GF +SR+ I G VR+
Sbjct: 134 ANTKIEVEDIG----EVAGRGAKTREVVVPSLRVDVVGAKGFGVSRAYFQQGIDGGKVRI 189
Query: 190 NWTTVTKNGTTLRTGDIVSVSGKGRIKIGE-INSTRKGKFAVEL 232
N + + +R GD +S G GR+ +N TR+G F VEL
Sbjct: 190 NGAQ-ARASSEVREGDSLSAEGLGRVDFKRVVNETRRGNFKVEL 232
>gi|421220747|ref|ZP_15677586.1| S4 domain protein [Streptococcus pneumoniae 2070425]
gi|421223001|ref|ZP_15679783.1| S4 domain protein [Streptococcus pneumoniae 2070531]
gi|395586657|gb|EJG47024.1| S4 domain protein [Streptococcus pneumoniae 2070425]
gi|395586981|gb|EJG47343.1| S4 domain protein [Streptococcus pneumoniae 2070531]
Length = 261
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 15/232 (6%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI----GEINSTRKGKFAVELI 233
V+VN+ V K+ T++ GD++SV GR+++ G+ RK K V+L+
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLLQDKGQTKKERK-KITVQLL 258
>gi|417892121|ref|ZP_12536178.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21200]
gi|341851407|gb|EGS92336.1| S4 domain protein [Staphylococcus aureus subsp. aureus 21200]
Length = 259
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P ER R +S + E SD D+ + I F H LG+++
Sbjct: 57 DLNVSFYGG-PNVERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 114
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+++ SV IP+ +
Sbjct: 115 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENW 172
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 173 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 232
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 233 FGRAHITDLGGKTKKDK 249
>gi|404482191|ref|ZP_11017418.1| hypothetical protein HMPREF1135_00478 [Clostridiales bacterium
OBRC5-5]
gi|404344352|gb|EJZ70709.1| hypothetical protein HMPREF1135_00478 [Clostridiales bacterium
OBRC5-5]
Length = 249
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 19/240 (7%)
Query: 1 MARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGH 55
+AR A + V +S FL + E++ + L +++ V GGY +AER C
Sbjct: 15 LARNAYFKNIVTYSMFLNLNEQAIFETIQ--KDLPNIRYVMFGGYSEAERKIVCFYCDNI 72
Query: 56 PEALTSDPDIVAALSITG-NFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 113
PE D++ + ++ N F +H DFLG+++ GI R +GDI + + A +
Sbjct: 73 PEF-----DMLEYIKVSPVNKKFADELTHRDFLGALMNLGIERRMVGDICI-ADNTAHII 126
Query: 114 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGFK 172
+++ +I+ L V + V R A E + +K I S R+D++ + +
Sbjct: 127 TFKSMSETIISELTTVKHTKVVLERES--ADELKAVNRVEYKKINIPSERLDSIIGSIYN 184
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVE 231
+SRSK+ I G V +N + + +++GDI++V G GR K +G S++KG+ E
Sbjct: 185 ISRSKVNLYIDAGKVFINSRQCFSHSSKIKSGDIITVRGLGRAKFLGISASSKKGRLFAE 244
>gi|418126312|ref|ZP_12763218.1| hypothetical protein SPAR86_1683 [Streptococcus pneumoniae GA44511]
gi|353796252|gb|EHD76597.1| hypothetical protein SPAR86_1683 [Streptococcus pneumoniae GA44511]
Length = 261
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEECPFTEKIDKIEQCRELDLTVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|335429598|ref|ZP_08556496.1| hypothetical protein HLPCO_11493 [Haloplasma contractile SSD-17B]
gi|334889608|gb|EGM27893.1| hypothetical protein HLPCO_11493 [Haloplasma contractile SSD-17B]
Length = 255
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 16/198 (8%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 98
GGY AER R + P +T +I V I N + +H + LGS++ + R
Sbjct: 59 GGYEDAERKRCFIC-PSYMTIYDEIFDVKCYKIEYNKRYVDLNHQNVLGSLMALKVDRSL 117
Query: 99 IGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYE-----PPRTKS 153
GDII F V E+ + ++T + VG + P+ +Y+ + K
Sbjct: 118 FGDIIFDEHDDCYFFVSKEIENLILTEFKTVG-------KYPISLKDYQGKVNYRKKYKL 170
Query: 154 FKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKG 213
+ I +S+R+D + S+ +SR++ LIS G V VN T DI+SV G
Sbjct: 171 REVIVSSIRLDTVISSVLNVSRNQASELISKGAVSVNSKLTYYQATKCEVKDIISVRKFG 230
Query: 214 RIKIGEIN-STRKGKFAV 230
RI I I T++ K V
Sbjct: 231 RIIIDGIKGKTKRSKLIV 248
>gi|331001804|ref|ZP_08325326.1| hypothetical protein HMPREF0491_00188 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412778|gb|EGG92161.1| hypothetical protein HMPREF0491_00188 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 249
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+AR+A + V +S FL +L ++K + GGY +AER + E
Sbjct: 15 LARKAYFKNVVTYSAFLNLYEQTIFEQIQNELPNIKNIMFGGYSEAERKIVCFYFDE--I 72
Query: 61 SDPDIVAALSITGNFGFQPC--------SHGDFLGSILGTGIAREKIGDIILQGEKGAQF 112
D D++ + I PC +H DFLG+++ GI R IGDI + + A
Sbjct: 73 PDFDMLEYIKIF------PCNKKFADNLTHRDFLGALMNLGIERHMIGDICID-DNTAHI 125
Query: 113 LVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFK 172
+ +++ +I L V + V + + +L+ R ++ + +S R+D++ + +
Sbjct: 126 ITFKTMSETIINDLSMVKHTKVVLEKENIDSLK-NINRLENKRINISSERLDSIIGSIYN 184
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 231
+SRSK+ I G V +N + ++ GDI++V G GR + I++ ++KG+ E
Sbjct: 185 ISRSKVNLYIDAGKVFINSKQCFSHSAKIKDGDIITVRGLGRARFLGISALSKKGRLFAE 244
>gi|419429862|ref|ZP_13970026.1| hypothetical protein SPAR25_1554 [Streptococcus pneumoniae GA11856]
gi|419527998|ref|ZP_14067541.1| S4 domain protein [Streptococcus pneumoniae GA17719]
gi|379550040|gb|EHZ15142.1| hypothetical protein SPAR25_1554 [Streptococcus pneumoniae GA11856]
gi|379566151|gb|EHZ31142.1| S4 domain protein [Streptococcus pneumoniae GA17719]
Length = 252
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGIACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELNLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|307709599|ref|ZP_07646052.1| S4 domain protein [Streptococcus mitis SK564]
gi|307619635|gb|EFN98758.1| S4 domain protein [Streptococcus mitis SK564]
Length = 261
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 109/215 (50%), Gaps = 16/215 (7%)
Query: 13 HSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP P ++ + L K + + G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLSCSSSGEFVLSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFENLTHAKILGTVINQLGIERKLFGDILVDDER-AQIMINQQFILLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLI 182
L+K+G + VS P + + + ++ I+ +S R+D L S+ KLSRS+ L+
Sbjct: 148 LKKIGRIPVSLEERPFTD---KIDKLEQYREIDLCVSSFRLDVLLSSVLKLSRSQANQLV 204
Query: 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 205 EKKLVQVNYHIVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|225861490|ref|YP_002742999.1| YlmH protein [Streptococcus pneumoniae Taiwan19F-14]
gi|387788710|ref|YP_006253778.1| YlmH protein [Streptococcus pneumoniae ST556]
gi|417313140|ref|ZP_12099852.1| hypothetical protein SPAR5_1539 [Streptococcus pneumoniae GA04375]
gi|418085654|ref|ZP_12722833.1| hypothetical protein SPAR90_1559 [Streptococcus pneumoniae GA47281]
gi|418094453|ref|ZP_12731580.1| hypothetical protein SPAR110_1581 [Streptococcus pneumoniae
GA49138]
gi|418119110|ref|ZP_12756067.1| hypothetical protein SPAR54_1151 [Streptococcus pneumoniae GA18523]
gi|418142176|ref|ZP_12778989.1| hypothetical protein SPAR30_1563 [Streptococcus pneumoniae GA13455]
gi|418151167|ref|ZP_12787913.1| hypothetical protein SPAR37_1580 [Streptococcus pneumoniae GA14798]
gi|418164957|ref|ZP_12801625.1| hypothetical protein SPAR45_1593 [Streptococcus pneumoniae GA17371]
gi|418171799|ref|ZP_12808423.1| hypothetical protein SPAR58_1584 [Streptococcus pneumoniae GA19451]
gi|418228169|ref|ZP_12854786.1| hypothetical protein SPAR135_1553 [Streptococcus pneumoniae
3063-00]
gi|419438700|ref|ZP_13978768.1| hypothetical protein SPAR6_1636 [Streptococcus pneumoniae GA13499]
gi|419449449|ref|ZP_13989445.1| hypothetical protein SPAR132_1529 [Streptococcus pneumoniae
4075-00]
gi|419502314|ref|ZP_14041998.1| hypothetical protein SPAR102_1560 [Streptococcus pneumoniae
GA47628]
gi|419519373|ref|ZP_14058979.1| hypothetical protein SPAR156_1525 [Streptococcus pneumoniae
GA08825]
gi|225726507|gb|ACO22358.1| YlmH protein [Streptococcus pneumoniae Taiwan19F-14]
gi|327389848|gb|EGE88193.1| hypothetical protein SPAR5_1539 [Streptococcus pneumoniae GA04375]
gi|353756363|gb|EHD36964.1| hypothetical protein SPAR90_1559 [Streptococcus pneumoniae GA47281]
gi|353764949|gb|EHD45497.1| hypothetical protein SPAR110_1581 [Streptococcus pneumoniae
GA49138]
gi|353791062|gb|EHD71443.1| hypothetical protein SPAR54_1151 [Streptococcus pneumoniae GA18523]
gi|353806427|gb|EHD86701.1| hypothetical protein SPAR30_1563 [Streptococcus pneumoniae GA13455]
gi|353814377|gb|EHD94603.1| hypothetical protein SPAR37_1580 [Streptococcus pneumoniae GA14798]
gi|353828789|gb|EHE08925.1| hypothetical protein SPAR45_1593 [Streptococcus pneumoniae GA17371]
gi|353835536|gb|EHE15630.1| hypothetical protein SPAR58_1584 [Streptococcus pneumoniae GA19451]
gi|353880564|gb|EHE60379.1| hypothetical protein SPAR135_1553 [Streptococcus pneumoniae
3063-00]
gi|379138452|gb|AFC95243.1| YlmH protein [Streptococcus pneumoniae ST556]
gi|379537107|gb|EHZ02292.1| hypothetical protein SPAR6_1636 [Streptococcus pneumoniae GA13499]
gi|379600527|gb|EHZ65308.1| hypothetical protein SPAR102_1560 [Streptococcus pneumoniae
GA47628]
gi|379622067|gb|EHZ86703.1| hypothetical protein SPAR132_1529 [Streptococcus pneumoniae
4075-00]
gi|379641210|gb|EIA05748.1| hypothetical protein SPAR156_1525 [Streptococcus pneumoniae
GA08825]
Length = 261
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 10/214 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGIACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELNLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
V+VN+ V K+ T++ GD++SV GR+++ +
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLFQ 241
>gi|415683779|ref|ZP_11448981.1| hypothetical protein CGSSa00_05208 [Staphylococcus aureus subsp.
aureus CGS00]
gi|315194077|gb|EFU24470.1| hypothetical protein CGSSa00_05208 [Staphylococcus aureus subsp.
aureus CGS00]
Length = 268
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 7/197 (3%)
Query: 34 DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG P AER R +S + E SD D+ + I F H LG+++
Sbjct: 66 DLNVSFYGG-PNAERKRAIISPNYYEPKESDFDL-TLMEIDYPEKFVTLKHQHILGTLMS 123
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
GI RE++GDII+ + QF++ L +++ L+ + SV IP+ +
Sbjct: 124 LGIEREQVGDIIVN--ERIQFVLTSRLESFIMLELQCIKGASVKLYTIPVTDMIQSNENW 181
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
K +SLR+D + + SR+ LI V+VN T V L+ D++S+ G
Sbjct: 182 KIESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQG 241
Query: 212 KGRIKIGEI-NSTRKGK 227
GR I ++ T+K K
Sbjct: 242 FGRAHITDLGGKTKKDK 258
>gi|402312199|ref|ZP_10831129.1| hypothetical protein HMPREF1140_0953 [Lachnospiraceae bacterium
ICM7]
gi|400370860|gb|EJP23842.1| hypothetical protein HMPREF1140_0953 [Lachnospiraceae bacterium
ICM7]
Length = 249
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 19/240 (7%)
Query: 1 MARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGH 55
+AR A + V++S FL + E++ + L +++ V GGY +AER C
Sbjct: 15 LARNAYFKNIVMYSMFLNLNEQTIFETIQ--KDLPNIRYVMFGGYSEAERKIVCFYCDNI 72
Query: 56 PEALTSDPDIVAALSITG-NFGF-QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFL 113
PE D++ + I+ N F +H DFLG+++ GI R +GDI + + A +
Sbjct: 73 PEF-----DMLEYIKISPVNKKFADDLTHRDFLGALMNLGIERHMVGDICIV-DNTAHII 126
Query: 114 VVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGFK 172
+++ +I+ L V V R A E + +K I S R+D++ + +
Sbjct: 127 TFKSMSETIISELTTVKRTKVVLERES--ADELKAVNRVEYKKINIPSERLDSIIGSIYN 184
Query: 173 LSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVE 231
+SRSK+ I G V +N + + +++GDI++V G GR K I++ ++KG+ E
Sbjct: 185 ISRSKVNLYIDAGKVFINSRQCFSHSSKIKSGDIITVRGLGRAKFLGISALSKKGRLFAE 244
>gi|222151012|ref|YP_002560165.1| hypothetical protein MCCL_0762 [Macrococcus caseolyticus JCSC5402]
gi|222120134|dbj|BAH17469.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 257
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 6/197 (3%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFLGSILG 91
D+ GG + ER R ++ +PE D V+A + F +H + LG+++
Sbjct: 53 DLNVSFYGGSGERERVR-ALIYPEYYEVQQEDFEVSAFKVKYAQKFVTLTHRNVLGALMQ 111
Query: 92 TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRT 151
G RE +GDII E Q ++ L DYL+ L K+ +V I L
Sbjct: 112 LGFKREYLGDIITGDE--LQIVIASHLNDYLVQHLTKLKGSTVKLVAIDADTLNEAIETY 169
Query: 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211
+S +SLR+D + + + SR+ I G ++VN + K + +GD +S+ G
Sbjct: 170 QSHHATVSSLRLDVVVAEMMRKSRAIAQKHIEAGHIKVNHVIIDKVSFVIASGDTLSIKG 229
Query: 212 KGRIKIGEI-NSTRKGK 227
GR ++ EI + T+K K
Sbjct: 230 YGRAQLTEIGDLTKKNK 246
>gi|418146904|ref|ZP_12783682.1| hypothetical protein SPAR32_1678 [Streptococcus pneumoniae GA13637]
gi|353812479|gb|EHD92714.1| hypothetical protein SPAR32_1678 [Streptococcus pneumoniae GA13637]
Length = 259
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 14/225 (6%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELNLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI----GEINSTRKG 226
V+VN+ V K+ T++ GD++SV GR+++ G+ RK
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLFQDKGQTKKRRKN 252
>gi|417936982|ref|ZP_12580288.1| S4 domain protein [Streptococcus infantis X]
gi|343399424|gb|EGV11946.1| S4 domain protein [Streptococcus infantis X]
Length = 261
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 9/228 (3%)
Query: 7 SRREVLHSDFLTPPVLKESMMALEKLAD---VKAVAQGGYPQAERCRLSVGHPEALT-SD 62
S+ E ++ L+P + + LE L + +K + Y +E R+ + P+ T S
Sbjct: 25 SQVEEHYAPILSPFINPHQVFILETLGNNRGIKVFSSTSYISSEYARVILA-PDYFTPSL 83
Query: 63 PDI-VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELAD 120
D + L I FQ +H LG++L GI R+ GDI++ EK AQ +V
Sbjct: 84 EDFEMTLLEIVYPSKFQQLTHSKILGTVLNRLGIDRKLFGDILVTEEK-AQIIVDRRFTT 142
Query: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN 180
++K+ + VS P + + + + +SLR+D S+ KLSRS+
Sbjct: 143 LFQDGIQKISELPVSLVERPFSDMIESKDDYQEKEVLVSSLRLDTFLSSILKLSRSQTSA 202
Query: 181 LISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGK 227
L+ V+VN+ V K+ ++ GD++SV GRI + + N T+K K
Sbjct: 203 LVEKKLVQVNYHIVEKSDYPVKIGDLISVRRFGRIILLKENGQTKKDK 250
>gi|289765067|ref|ZP_06524445.1| RNA binding protein [Fusobacterium sp. D11]
gi|336401695|ref|ZP_08582457.1| hypothetical protein HMPREF0404_01748 [Fusobacterium sp. 21_1A]
gi|336419702|ref|ZP_08599957.1| RNA binding protein [Fusobacterium sp. 11_3_2]
gi|423137340|ref|ZP_17124983.1| hypothetical protein HMPREF9942_01121 [Fusobacterium nucleatum
subsp. animalis F0419]
gi|289716622|gb|EFD80634.1| RNA binding protein [Fusobacterium sp. D11]
gi|336160796|gb|EGN63828.1| hypothetical protein HMPREF0404_01748 [Fusobacterium sp. 21_1A]
gi|336163022|gb|EGN65964.1| RNA binding protein [Fusobacterium sp. 11_3_2]
gi|371960273|gb|EHO77933.1| hypothetical protein HMPREF9942_01121 [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 241
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 119/244 (48%), Gaps = 24/244 (9%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A +A + V++S+ P S + K + +K +G E+ L+V +PE +
Sbjct: 14 LAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLLAV-YPEYFS 65
Query: 61 SD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVP 116
D P V I F H +LG+ILG GI RE +GD+I++ ++ +++
Sbjct: 66 EDYLYFP--VKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKNDECYG-IILE 122
Query: 117 ELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKL 173
+ D+L +L ++ + V I E E P+ + FK + +SLR+D+L S L
Sbjct: 123 NMFDFLKENLLRINSSPVEIIEIG----ENEVPQNE-FKELNIRLSSLRLDSLVSELTNL 177
Query: 174 SRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVEL 232
SR+ VN I G+V+VN+ + GD V + G+ +I E N T+K K + +
Sbjct: 178 SRASSVNYIDLGNVQVNYEIQRGKSYRISVGDTVIIKKYGKFRIEEENGLTKKDKVKLIV 237
Query: 233 IQYL 236
+Y+
Sbjct: 238 RKYI 241
>gi|420177418|ref|ZP_14683754.1| YlmH protein [Staphylococcus epidermidis NIHLM057]
gi|420179260|ref|ZP_14685555.1| YlmH protein [Staphylococcus epidermidis NIHLM053]
gi|394247802|gb|EJD93044.1| YlmH protein [Staphylococcus epidermidis NIHLM057]
gi|394254066|gb|EJD99048.1| YlmH protein [Staphylococcus epidermidis NIHLM053]
Length = 220
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 11/203 (5%)
Query: 34 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSI 89
D+ GG P AER R + L P + + + F H LG++
Sbjct: 18 DLHVTFFGG-PHAERKRAIIA---PLYFKPQLEDFELTLFELQYPKKFVTIQHQHVLGTL 73
Query: 90 LGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPP 149
+ GI R+++GDII+ GE QF++ +L Y+I+ L ++ +V IP +
Sbjct: 74 MSLGIQRDQLGDIIV-GE-DIQFVLTKQLESYIISELTRIKGATVKLNSIPTEDMIQSEE 131
Query: 150 RTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 209
K T ++LR+D + SR+ LI V+VN T + L D++S+
Sbjct: 132 NWKVHSTTVSALRLDVVLKEIIHKSRNIAQQLIIKKRVKVNHTVIDSTDFQLEQNDLLSI 191
Query: 210 SGKGRIKIGEI-NSTRKGKFAVE 231
G GR +I EI T+K K +
Sbjct: 192 QGYGRAQIVEIGGKTKKNKLHIH 214
>gi|303255983|ref|ZP_07342011.1| hypothetical protein CGSSpBS455_10815 [Streptococcus pneumoniae
BS455]
gi|302597042|gb|EFL64160.1| hypothetical protein CGSSpBS455_10815 [Streptococcus pneumoniae
BS455]
Length = 261
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 FQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLCVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|262037759|ref|ZP_06011201.1| oligoendopeptidase F [Leptotrichia goodfellowii F0264]
gi|261748231|gb|EEY35628.1| oligoendopeptidase F [Leptotrichia goodfellowii F0264]
Length = 885
Score = 73.2 bits (178), Expect = 9e-11, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 24/223 (10%)
Query: 15 DFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV----------GHPEALTSDPD 64
+F TP + K+ EK+ ++K A G + ++R +++ E + SD D
Sbjct: 39 EFYTPNIWKK---LTEKIENIKIEANGIFENSDRRQIAFIPEGFYGKNSSGIEEIYSDAD 95
Query: 65 ---------IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 115
L I N F+ H DFLGS+ G I RE +GD+I E A V
Sbjct: 96 GDNKNSAEFPSKLLKIKINSRFREYGHKDFLGSLTGLNIKRELMGDLIFDKET-AYVPVS 154
Query: 116 PELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVDALASAGFKLS 174
+++DY++T L+++G S + E P K I S R+D++ +A LS
Sbjct: 155 DKISDYILTELKQIGRDKCSVEEEDIKNREIIPEYKYDDKFITVPSKRLDSIVAAITLLS 214
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
R+K++ I G V V++ + TG ++++ G G+ K+
Sbjct: 215 RNKVIEPIEKGKVLVDYYEEKDKSKIIETGSLITIRGYGKYKL 257
>gi|421218294|ref|ZP_15675188.1| S4 domain protein [Streptococcus pneumoniae 2070335]
gi|395583063|gb|EJG43512.1| S4 domain protein [Streptococcus pneumoniae 2070335]
Length = 252
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELNLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|237741192|ref|ZP_04571673.1| RNA binding protein [Fusobacterium sp. 4_1_13]
gi|229430724|gb|EEO40936.1| RNA binding protein [Fusobacterium sp. 4_1_13]
Length = 241
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFL 86
K + +K +G E+ L+V +PE T D P V I F H +L
Sbjct: 37 KYSGMKFSFKGLNEDCEKKLLAV-YPEYFTEDYLYFP--VKYFKIIKKSKFINLEHKHYL 93
Query: 87 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 146
G+ILG GI RE +GD+I++ + +++ + D+L +L ++ + + I E
Sbjct: 94 GNILGLGIKREILGDLIVKNNECYG-IILENMFDFLKENLLRINSSPIEIIEIT----ER 148
Query: 147 EPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRT 203
+ P+ + FK + +SLR+D+L S LSR+ VN I G+V+VN+ + +
Sbjct: 149 DVPQNE-FKELNIRLSSLRLDSLVSELTNLSRALSVNYIDLGNVQVNYEIQREKSYRISV 207
Query: 204 GDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
GD + + G+ +I E N T+K K + + +Y+
Sbjct: 208 GDTIIIKKYGKFRIEEENGLTKKDKVKLIVRKYI 241
>gi|418121718|ref|ZP_12758661.1| hypothetical protein SPAR80_1589 [Streptococcus pneumoniae GA44194]
gi|418185412|ref|ZP_12821953.1| hypothetical protein SPAR91_1601 [Streptococcus pneumoniae GA47283]
gi|418232663|ref|ZP_12859249.1| hypothetical protein SPAR13_1573 [Streptococcus pneumoniae GA07228]
gi|419523865|ref|ZP_14063440.1| S4 domain protein [Streptococcus pneumoniae GA13723]
gi|421271072|ref|ZP_15721926.1| hypothetical protein SPAR48_1627 [Streptococcus pneumoniae SPAR48]
gi|353792554|gb|EHD72926.1| hypothetical protein SPAR80_1589 [Streptococcus pneumoniae GA44194]
gi|353848696|gb|EHE28708.1| hypothetical protein SPAR91_1601 [Streptococcus pneumoniae GA47283]
gi|353885976|gb|EHE65760.1| hypothetical protein SPAR13_1573 [Streptococcus pneumoniae GA07228]
gi|379556273|gb|EHZ21328.1| S4 domain protein [Streptococcus pneumoniae GA13723]
gi|395867286|gb|EJG78410.1| hypothetical protein SPAR48_1627 [Streptococcus pneumoniae SPAR48]
Length = 259
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 14/225 (6%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI----GEINSTRKG 226
V+VN+ V K+ T++ GD++SV GR+++ G+ RK
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLLQDKGQTKKRRKN 252
>gi|294784591|ref|ZP_06749880.1| RNA binding protein [Fusobacterium sp. 3_1_27]
gi|294487807|gb|EFG35166.1| RNA binding protein [Fusobacterium sp. 3_1_27]
Length = 241
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFL 86
K + +K +G E+ L+V +PE T D P V I F H +L
Sbjct: 37 KYSGMKFSFKGLNEDCEKKLLAV-YPEYFTEDYLYFP--VKYFKIIKKSKFINLEHKHYL 93
Query: 87 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 146
G+ILG GI RE +GD+I++ + +++ + D+L +L ++ + + I E
Sbjct: 94 GNILGLGIKREILGDLIVKNNECYG-IILENMFDFLKENLLRINSSPIEIIEIT----ER 148
Query: 147 EPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRT 203
+ P+ + FK + +SLR+D+L S LSR+ VN I G+V+VN+ + +
Sbjct: 149 DVPQNE-FKELNIRLSSLRLDSLVSELTNLSRALSVNYIDLGNVQVNYEIQREKSYRISV 207
Query: 204 GDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
GD + + G+ +I E N T+K K + + +Y+
Sbjct: 208 GDTIIIKKYGKFRIEEENGLTKKDKVKLIVRKYI 241
>gi|419767002|ref|ZP_14293173.1| S4 domain protein [Streptococcus mitis SK579]
gi|383353520|gb|EID31129.1| S4 domain protein [Streptococcus mitis SK579]
Length = 261
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRILL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|335045423|ref|ZP_08538446.1| S4 domain protein [Oribacterium sp. oral taxon 108 str. F0425]
gi|333759209|gb|EGL36766.1| S4 domain protein [Oribacterium sp. oral taxon 108 str. F0425]
Length = 254
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 5/160 (3%)
Query: 78 QPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCT 137
+ SH D LG+++ GI+RE++GDI+ Q + FL + ++ DY+ +L + + +V C
Sbjct: 99 EKLSHRDVLGAVMNLGISREQVGDILFQEDVSYLFL-LRKMKDYVAENLSTIRHTAVQCK 157
Query: 138 RIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKN 197
+ + +E R + S R+DA+ SA F LSR V + TV K
Sbjct: 158 EV--VEMEGMERREVEERIFVPSERLDAIVSAVFHLSRGNAQEYFQKELVYRDGITV-KG 214
Query: 198 GTTLRTGDIVSVSGKGRIK-IGEINSTRKGKFAVELIQYL 236
++L+ G+ +SV G G+ + IG +T+KG+ +++Y+
Sbjct: 215 SSSLKGGEKISVRGLGKFRYIGVEKNTKKGRIVAVILRYI 254
>gi|260496850|ref|ZP_05815970.1| RNA binding protein [Fusobacterium sp. 3_1_33]
gi|260196592|gb|EEW94119.1| RNA binding protein [Fusobacterium sp. 3_1_33]
Length = 241
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFL 86
K + +K +G E+ L+V +PE + D P V I F H +L
Sbjct: 37 KYSGMKFSFKGLNEDCEKKLLAV-YPEYFSEDYLYFP--VKYFKIIKKSRFINLEHKHYL 93
Query: 87 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 146
G+ILG GI RE +GD+I++ ++ +++ + D+L +L ++ + V I E
Sbjct: 94 GNILGLGIKREILGDLIVKNDECYG-IILENMFDFLKENLLRINSSPVEIIEIG----EN 148
Query: 147 EPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRT 203
E P+ + FK + +SLR+D+L S LSR+ VN I G+V+VN+ +
Sbjct: 149 EVPQNE-FKELNIRLSSLRLDSLVSELTNLSRASSVNYIDLGNVQVNYEIQRGKSYRISV 207
Query: 204 GDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
GD V + G+ +I E N T+K K + + +Y+
Sbjct: 208 GDTVIIKKYGKFRIEEENGLTKKDKVKLIVRKYI 241
>gi|237743523|ref|ZP_04574004.1| RNA binding protein [Fusobacterium sp. 7_1]
gi|229433302|gb|EEO43514.1| RNA binding protein [Fusobacterium sp. 7_1]
Length = 241
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 22/243 (9%)
Query: 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT 60
+A +A + V++S+ P S + K + +K +G E+ L+V +PE +
Sbjct: 14 LAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFYFKGLNEDCEKKLLAV-YPEYFS 65
Query: 61 SDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQF-LVVPE 117
D V I F H +LG+ILG GI RE +GD+I++ G + +++
Sbjct: 66 EDYLYFPVKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKN--GECYGIILEN 123
Query: 118 LADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIE---ASLRVDALASAGFKLS 174
+ D+L +L ++ + V I E E P+ + FK + +SLR+D+L S LS
Sbjct: 124 MFDFLKENLLRINSSPVEIIEIG----ENEVPQNE-FKELNIRLSSLRLDSLVSELTNLS 178
Query: 175 RSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINS-TRKGKFAVELI 233
R+ VN I G+V+VN+ + GD V + G+ +I E N T+K K + +
Sbjct: 179 RASSVNYIDLGNVQVNYEIQRGKSYRISVGDTVIIKKYGKFRIEEENGLTKKDKVKLIVR 238
Query: 234 QYL 236
+Y+
Sbjct: 239 KYI 241
>gi|421144308|ref|ZP_15604223.1| RNA binding protein [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
gi|395489258|gb|EJG10098.1| RNA binding protein [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
Length = 241
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFL 86
K + +K +G E+ L+V +PE T D P V I F H +L
Sbjct: 37 KYSGMKFSFKGLNEDCEKKLLAV-YPEYFTEDYLYFP--VKYFKIIKKSKFINLEHKHYL 93
Query: 87 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 146
G+IL GI RE +GD+I++ + +++ + D+L +L ++ + + T I E
Sbjct: 94 GNILSLGIKREILGDLIVKNNECYG-IILENMFDFLKENLLRINSSPIEITEIT----ER 148
Query: 147 EPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRT 203
+ P+ + FK + +SLR+D+L S LSR+ VN I G+V+VN+ + +
Sbjct: 149 DVPQNE-FKELNIRLSSLRLDSLVSELTNLSRALSVNYIDLGNVQVNYEIQREKSYRISV 207
Query: 204 GDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
GD + + G+ +I E N T+K K + + +Y+
Sbjct: 208 GDTIIIKKYGKFRIEEENGLTKKDKVKLIVRKYI 241
>gi|168491455|ref|ZP_02715598.1| YlmH protein [Streptococcus pneumoniae CDC0288-04]
gi|225857278|ref|YP_002738789.1| YlmH protein [Streptococcus pneumoniae P1031]
gi|418194229|ref|ZP_12830718.1| hypothetical protein SPAR119_1515 [Streptococcus pneumoniae
GA47439]
gi|421232366|ref|ZP_15689007.1| S4 domain protein [Streptococcus pneumoniae 2080076]
gi|421236752|ref|ZP_15693349.1| S4 domain protein [Streptococcus pneumoniae 2071004]
gi|444409145|ref|ZP_21205743.1| S4 domain protein [Streptococcus pneumoniae PNI0076]
gi|444412805|ref|ZP_21209124.1| S4 domain protein [Streptococcus pneumoniae PNI0153]
gi|444414509|ref|ZP_21210766.1| S4 domain protein [Streptococcus pneumoniae PNI0199]
gi|444422001|ref|ZP_21217666.1| S4 domain protein [Streptococcus pneumoniae PNI0446]
gi|183574265|gb|EDT94793.1| YlmH protein [Streptococcus pneumoniae CDC0288-04]
gi|225724661|gb|ACO20513.1| YlmH protein [Streptococcus pneumoniae P1031]
gi|353857807|gb|EHE37769.1| hypothetical protein SPAR119_1515 [Streptococcus pneumoniae
GA47439]
gi|395594869|gb|EJG55104.1| S4 domain protein [Streptococcus pneumoniae 2080076]
gi|395601515|gb|EJG61662.1| S4 domain protein [Streptococcus pneumoniae 2071004]
gi|444274044|gb|ELU79699.1| S4 domain protein [Streptococcus pneumoniae PNI0153]
gi|444280070|gb|ELU85446.1| S4 domain protein [Streptococcus pneumoniae PNI0076]
gi|444281651|gb|ELU86959.1| S4 domain protein [Streptococcus pneumoniae PNI0199]
gi|444288625|gb|ELU93516.1| S4 domain protein [Streptococcus pneumoniae PNI0446]
Length = 261
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 10/214 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELNLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
V+VN+ V K+ T++ GD++SV GR+++ +
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLFQ 241
>gi|34762555|ref|ZP_00143551.1| RNA binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27887776|gb|EAA24849.1| RNA binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 241
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 31 KLADVKAVAQGGYPQAERCRLSVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFL 86
K + +K +G E+ L+V +PE T D P V I F H +L
Sbjct: 37 KYSGMKFSFKGLNEDCEKKLLAV-YPEYFTEDYLYFP--VKYFKIIKKSKFINLEHKHYL 93
Query: 87 GSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEY 146
G+ILG GI RE +GD+I++ + +++ + D+L +L ++ + + I E
Sbjct: 94 GNILGLGIKREILGDLIVKNNECYG-IILENMFDFLKENLLRINSSPIEIIEIT----EK 148
Query: 147 EPPRTKSFKTIE---ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRT 203
+ P+ + FK + +SLR+D+L S LSR+ VN I G+V+VN+ + +
Sbjct: 149 DVPQNE-FKELNIRLSSLRLDSLVSELTNLSRALSVNYIDLGNVQVNYEIQREKSYRILV 207
Query: 204 GDIVSVSGKGRIKIGEINS-TRKGKFAVELIQYL 236
GD + + G+ +I E N T+K K + + +Y+
Sbjct: 208 GDTIIIKKYGKFRIEEENGLTKKDKVKLIVRKYI 241
>gi|418169761|ref|ZP_12806402.1| hypothetical protein SPAR56_1856 [Streptococcus pneumoniae GA19077]
gi|419535118|ref|ZP_14074617.1| S4 domain protein [Streptococcus pneumoniae GA17457]
gi|353833740|gb|EHE13848.1| hypothetical protein SPAR56_1856 [Streptococcus pneumoniae GA19077]
gi|379563279|gb|EHZ28283.1| S4 domain protein [Streptococcus pneumoniae GA17457]
Length = 259
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 14/225 (6%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEYLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI----GEINSTRKG 226
V+VN+ V K+ T++ GD++SV GR+++ G+ RK
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLLQDKGQTKKRRKN 252
>gi|358067456|ref|ZP_09153935.1| hypothetical protein HMPREF9333_00816 [Johnsonella ignava ATCC
51276]
gi|356694372|gb|EHI56034.1| hypothetical protein HMPREF9333_00816 [Johnsonella ignava ATCC
51276]
Length = 261
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 114/253 (45%), Gaps = 25/253 (9%)
Query: 1 MARRASSRREVLHSDFLTPPVLKES--MMALEKLADVKAVAQGGYPQAERCRLSVGHPEA 58
+A RA R H+ FL L E +++ L V GGY AER ++ P
Sbjct: 17 LADRALKRDVFTHTSFLN---LNEQAVFFSIKDLPKVNYKLIGGYEAAER-KVVCFFPVV 72
Query: 59 LTSDPDIVAALSITGN-FGF---QPC--------SHGDFLGSILGTGIAREKIGDIILQG 106
+ D I F + +P +H D+LG+++ GI R GDI++
Sbjct: 73 FEFENDFEQLSDINQKIFDYIYIKPVNEKFSDRLTHRDYLGALMNLGIDRCMTGDIVMSC 132
Query: 107 EKGAQFLVVPELADYLIT-SLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEA-SLRVD 164
G+ ++VV + +I +LE V V+ + + T K I S+R+D
Sbjct: 133 --GSAYVVVLKRISRIIADNLETVKKTKVAVSIEN--CFDTAISDTGYIKRINVISIRID 188
Query: 165 ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK-IGEINST 223
AL SA F LSR V + V VN + + L++ DIVS+ G GR K IGE + T
Sbjct: 189 ALISAVFNLSRGNAVRYVDAEKVFVNSRCIISHSYALKSEDIVSIRGLGRFKYIGEESVT 248
Query: 224 RKGKFAVELIQYL 236
+KG+ V + Y+
Sbjct: 249 KKGRLMVSVKCYV 261
>gi|417679626|ref|ZP_12329022.1| hypothetical protein SPAR50_1662 [Streptococcus pneumoniae GA17570]
gi|417694539|ref|ZP_12343726.1| hypothetical protein SPAR120_1594 [Streptococcus pneumoniae
GA47901]
gi|417696823|ref|ZP_12346001.1| hypothetical protein SPAR93_1698 [Streptococcus pneumoniae GA47368]
gi|418083467|ref|ZP_12720664.1| hypothetical protein SPAR81_1557 [Streptococcus pneumoniae GA44288]
gi|418092266|ref|ZP_12729406.1| hypothetical protein SPAR84_1640 [Streptococcus pneumoniae GA44452]
gi|418096764|ref|ZP_12733875.1| hypothetical protein SPAR40_1695 [Streptococcus pneumoniae GA16531]
gi|418108089|ref|ZP_12745126.1| hypothetical protein SPAR70_1636 [Streptococcus pneumoniae GA41410]
gi|418130808|ref|ZP_12767691.1| hypothetical protein SPAR14_1607 [Streptococcus pneumoniae GA07643]
gi|418137724|ref|ZP_12774562.1| hypothetical protein SPAR24_1624 [Streptococcus pneumoniae GA11663]
gi|418178707|ref|ZP_12815290.1| hypothetical protein SPAR73_1641 [Streptococcus pneumoniae GA41565]
gi|418183188|ref|ZP_12819746.1| hypothetical protein SPAR78_1596 [Streptococcus pneumoniae GA43380]
gi|418198488|ref|ZP_12834946.1| hypothetical protein SPAR106_1576 [Streptococcus pneumoniae
GA47778]
gi|418214856|ref|ZP_12841590.1| hypothetical protein SPAR118_1659 [Streptococcus pneumoniae
GA54644]
gi|418223863|ref|ZP_12850503.1| hypothetical protein SPAR127_1564 [Streptococcus pneumoniae
5185-06]
gi|419427719|ref|ZP_13967900.1| hypothetical protein SPAR130_1519 [Streptococcus pneumoniae
5652-06]
gi|419436459|ref|ZP_13976546.1| hypothetical protein SPAR126_1527 [Streptococcus pneumoniae
8190-05]
gi|419445169|ref|ZP_13985184.1| hypothetical protein SPAR60_1518 [Streptococcus pneumoniae GA19923]
gi|419447320|ref|ZP_13987325.1| hypothetical protein SPAR129_1557 [Streptococcus pneumoniae
7879-04]
gi|419460472|ref|ZP_14000400.1| hypothetical protein SPAR2_1648 [Streptococcus pneumoniae GA02270]
gi|419480501|ref|ZP_14020305.1| hypothetical protein SPAR57_1571 [Streptococcus pneumoniae GA19101]
gi|419500208|ref|ZP_14039902.1| hypothetical protein SPAR101_1586 [Streptococcus pneumoniae
GA47597]
gi|421213598|ref|ZP_15670552.1| S4 domain protein [Streptococcus pneumoniae 2070108]
gi|444382294|ref|ZP_21180497.1| S4 domain protein [Streptococcus pneumoniae PCS8106]
gi|332072491|gb|EGI82974.1| hypothetical protein SPAR50_1662 [Streptococcus pneumoniae GA17570]
gi|332200221|gb|EGJ14294.1| hypothetical protein SPAR93_1698 [Streptococcus pneumoniae GA47368]
gi|332201088|gb|EGJ15159.1| hypothetical protein SPAR120_1594 [Streptococcus pneumoniae
GA47901]
gi|353754687|gb|EHD35299.1| hypothetical protein SPAR81_1557 [Streptococcus pneumoniae GA44288]
gi|353762966|gb|EHD43523.1| hypothetical protein SPAR84_1640 [Streptococcus pneumoniae GA44452]
gi|353768485|gb|EHD49009.1| hypothetical protein SPAR40_1695 [Streptococcus pneumoniae GA16531]
gi|353778366|gb|EHD58834.1| hypothetical protein SPAR70_1636 [Streptococcus pneumoniae GA41410]
gi|353802132|gb|EHD82432.1| hypothetical protein SPAR14_1607 [Streptococcus pneumoniae GA07643]
gi|353842766|gb|EHE22812.1| hypothetical protein SPAR73_1641 [Streptococcus pneumoniae GA41565]
gi|353848171|gb|EHE28188.1| hypothetical protein SPAR78_1596 [Streptococcus pneumoniae GA43380]
gi|353861598|gb|EHE41533.1| hypothetical protein SPAR106_1576 [Streptococcus pneumoniae
GA47778]
gi|353869586|gb|EHE49467.1| hypothetical protein SPAR118_1659 [Streptococcus pneumoniae
GA54644]
gi|353878661|gb|EHE58491.1| hypothetical protein SPAR127_1564 [Streptococcus pneumoniae
5185-06]
gi|353900679|gb|EHE76230.1| hypothetical protein SPAR24_1624 [Streptococcus pneumoniae GA11663]
gi|379530608|gb|EHY95847.1| hypothetical protein SPAR2_1648 [Streptococcus pneumoniae GA02270]
gi|379569670|gb|EHZ34637.1| hypothetical protein SPAR57_1571 [Streptococcus pneumoniae GA19101]
gi|379572862|gb|EHZ37819.1| hypothetical protein SPAR60_1518 [Streptococcus pneumoniae GA19923]
gi|379599516|gb|EHZ64299.1| hypothetical protein SPAR101_1586 [Streptococcus pneumoniae
GA47597]
gi|379612898|gb|EHZ77613.1| hypothetical protein SPAR126_1527 [Streptococcus pneumoniae
8190-05]
gi|379614860|gb|EHZ79570.1| hypothetical protein SPAR129_1557 [Streptococcus pneumoniae
7879-04]
gi|379617912|gb|EHZ82592.1| hypothetical protein SPAR130_1519 [Streptococcus pneumoniae
5652-06]
gi|395578829|gb|EJG39339.1| S4 domain protein [Streptococcus pneumoniae 2070108]
gi|444252568|gb|ELU59030.1| S4 domain protein [Streptococcus pneumoniae PCS8106]
Length = 252
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|223043737|ref|ZP_03613780.1| YlmH protein [Staphylococcus capitis SK14]
gi|417907086|ref|ZP_12550862.1| S4 domain protein [Staphylococcus capitis VCU116]
gi|222442834|gb|EEE48936.1| YlmH protein [Staphylococcus capitis SK14]
gi|341596717|gb|EGS39308.1| S4 domain protein [Staphylococcus capitis VCU116]
Length = 262
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 4/191 (2%)
Query: 41 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 100
G Y + +R ++ + EA D ++ + L I F H LG+++ GI RE++G
Sbjct: 68 GPYAERKRAIIAPSYYEAQVEDFEL-SLLRIDYPEKFVSIQHQHVLGTLMSLGIEREQLG 126
Query: 101 DIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEAS 160
DII+ + QF++ L Y++ L ++ +V IP+ + K T ++
Sbjct: 127 DIIVADD--IQFVLTERLESYIMFELNRIKGATVKLNSIPIKDMIQSKENWKIQSTTVSA 184
Query: 161 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 220
+R+D + SR+ LI V+VN T + L D++S+ G GR +I +I
Sbjct: 185 MRLDVVLKDMIHKSRNIAKQLIEKKRVKVNHTIIDTPDFQLEQNDLLSIQGFGRAQIIQI 244
Query: 221 -NSTRKGKFAV 230
T+K K +
Sbjct: 245 GGRTKKDKLHI 255
>gi|418976821|ref|ZP_13524666.1| S4 domain protein [Streptococcus mitis SK575]
gi|383350820|gb|EID28671.1| S4 domain protein [Streptococcus mitis SK575]
Length = 261
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEDRPFTEKIDKLEQYRELDLCVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|421230271|ref|ZP_15686935.1| S4 domain protein [Streptococcus pneumoniae 2061376]
gi|421292534|ref|ZP_15743268.1| ylmH [Streptococcus pneumoniae GA56348]
gi|421312471|ref|ZP_15763073.1| ylmH [Streptococcus pneumoniae GA58981]
gi|395593797|gb|EJG54039.1| S4 domain protein [Streptococcus pneumoniae 2061376]
gi|395891841|gb|EJH02835.1| ylmH [Streptococcus pneumoniae GA56348]
gi|395909325|gb|EJH20201.1| ylmH [Streptococcus pneumoniae GA58981]
Length = 241
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 11 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 69
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 70 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 127
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 128 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 187
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 188 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 219
>gi|116516882|ref|YP_816931.1| YlmH protein [Streptococcus pneumoniae D39]
gi|149021244|ref|ZP_01835490.1| YlmH protein [Streptococcus pneumoniae SP23-BS72]
gi|168493563|ref|ZP_02717706.1| YlmH protein [Streptococcus pneumoniae CDC3059-06]
gi|225855092|ref|YP_002736604.1| YlmH protein [Streptococcus pneumoniae JJA]
gi|225859417|ref|YP_002740927.1| YlmH protein [Streptococcus pneumoniae 70585]
gi|410477034|ref|YP_006743793.1| hypothetical protein HMPREF1038_01645 [Streptococcus pneumoniae
gamPNI0373]
gi|418087338|ref|ZP_12724507.1| hypothetical protein SPAR87_1123 [Streptococcus pneumoniae GA47033]
gi|418098981|ref|ZP_12736078.1| hypothetical protein SPAR122_1563 [Streptococcus pneumoniae
6901-05]
gi|418103351|ref|ZP_12740423.1| hypothetical protein SPAR143_1630 [Streptococcus pneumoniae NP070]
gi|418117334|ref|ZP_12754303.1| hypothetical protein SPAR124_1549 [Streptococcus pneumoniae
6963-05]
gi|419433939|ref|ZP_13974057.1| hypothetical protein SPAR63_1303 [Streptococcus pneumoniae GA40183]
gi|419456013|ref|ZP_13995970.1| hypothetical protein SPAR139_1710 [Streptococcus pneumoniae
EU-NP04]
gi|419465282|ref|ZP_14005173.1| hypothetical protein SPAR4_1653 [Streptococcus pneumoniae GA04175]
gi|419469461|ref|ZP_14009329.1| hypothetical protein SPAR9_1535 [Streptococcus pneumoniae GA06083]
gi|419475992|ref|ZP_14015828.1| hypothetical protein SPAR36_1595 [Streptococcus pneumoniae GA14688]
gi|419487137|ref|ZP_14026899.1| hypothetical protein SPAR79_1650 [Streptococcus pneumoniae GA44128]
gi|419508757|ref|ZP_14048408.1| hypothetical protein SPAR114_1649 [Streptococcus pneumoniae
GA49542]
gi|419521591|ref|ZP_14061186.1| S4 domain protein [Streptococcus pneumoniae GA05245]
gi|421209429|ref|ZP_15666442.1| S4 domain protein [Streptococcus pneumoniae 2070005]
gi|421234551|ref|ZP_15691169.1| S4 domain protein [Streptococcus pneumoniae 2061617]
gi|421241124|ref|ZP_15697669.1| S4 domain protein [Streptococcus pneumoniae 2080913]
gi|421249892|ref|ZP_15706349.1| S4 domain protein [Streptococcus pneumoniae 2082239]
gi|421281648|ref|ZP_15732445.1| ylmH [Streptococcus pneumoniae GA04672]
gi|421285761|ref|ZP_15736537.1| ylmH [Streptococcus pneumoniae GA60190]
gi|421290222|ref|ZP_15740972.1| ylmH [Streptococcus pneumoniae GA54354]
gi|421305614|ref|ZP_15756268.1| ylmH [Streptococcus pneumoniae GA62331]
gi|421307856|ref|ZP_15758498.1| ylmH [Streptococcus pneumoniae GA60132]
gi|421310062|ref|ZP_15760687.1| ylmH [Streptococcus pneumoniae GA62681]
gi|444387027|ref|ZP_21185053.1| S4 domain protein [Streptococcus pneumoniae PCS125219]
gi|444389236|ref|ZP_21187153.1| S4 domain protein [Streptococcus pneumoniae PCS70012]
gi|444392997|ref|ZP_21190658.1| S4 domain protein [Streptococcus pneumoniae PCS81218]
gi|444394520|ref|ZP_21192071.1| S4 domain protein [Streptococcus pneumoniae PNI0002]
gi|444398114|ref|ZP_21195597.1| S4 domain protein [Streptococcus pneumoniae PNI0006]
gi|444400395|ref|ZP_21197798.1| S4 domain protein [Streptococcus pneumoniae PNI0007]
gi|444402899|ref|ZP_21200046.1| S4 domain protein [Streptococcus pneumoniae PNI0008]
gi|444404359|ref|ZP_21201315.1| S4 domain protein [Streptococcus pneumoniae PNI0009]
gi|444407733|ref|ZP_21204400.1| S4 domain protein [Streptococcus pneumoniae PNI0010]
gi|444418358|ref|ZP_21214342.1| S4 domain protein [Streptococcus pneumoniae PNI0360]
gi|444419887|ref|ZP_21215721.1| S4 domain protein [Streptococcus pneumoniae PNI0427]
gi|116077458|gb|ABJ55178.1| YlmH protein [Streptococcus pneumoniae D39]
gi|147930345|gb|EDK81329.1| YlmH protein [Streptococcus pneumoniae SP23-BS72]
gi|183576486|gb|EDT97014.1| YlmH protein [Streptococcus pneumoniae CDC3059-06]
gi|225720470|gb|ACO16324.1| YlmH protein [Streptococcus pneumoniae 70585]
gi|225724266|gb|ACO20119.1| YlmH protein [Streptococcus pneumoniae JJA]
gi|353758354|gb|EHD38946.1| hypothetical protein SPAR87_1123 [Streptococcus pneumoniae GA47033]
gi|353768963|gb|EHD49485.1| hypothetical protein SPAR122_1563 [Streptococcus pneumoniae
6901-05]
gi|353774652|gb|EHD55139.1| hypothetical protein SPAR143_1630 [Streptococcus pneumoniae NP070]
gi|353788015|gb|EHD68413.1| hypothetical protein SPAR124_1549 [Streptococcus pneumoniae
6963-05]
gi|379536882|gb|EHZ02068.1| hypothetical protein SPAR4_1653 [Streptococcus pneumoniae GA04175]
gi|379538891|gb|EHZ04071.1| S4 domain protein [Streptococcus pneumoniae GA05245]
gi|379544265|gb|EHZ09410.1| hypothetical protein SPAR9_1535 [Streptococcus pneumoniae GA06083]
gi|379558774|gb|EHZ23806.1| hypothetical protein SPAR36_1595 [Streptococcus pneumoniae GA14688]
gi|379576940|gb|EHZ41864.1| hypothetical protein SPAR63_1303 [Streptococcus pneumoniae GA40183]
gi|379585506|gb|EHZ50362.1| hypothetical protein SPAR79_1650 [Streptococcus pneumoniae GA44128]
gi|379610711|gb|EHZ75441.1| hypothetical protein SPAR114_1649 [Streptococcus pneumoniae
GA49542]
gi|379627989|gb|EHZ92595.1| hypothetical protein SPAR139_1710 [Streptococcus pneumoniae
EU-NP04]
gi|395573525|gb|EJG34115.1| S4 domain protein [Streptococcus pneumoniae 2070005]
gi|395600405|gb|EJG60562.1| S4 domain protein [Streptococcus pneumoniae 2061617]
gi|395607502|gb|EJG67599.1| S4 domain protein [Streptococcus pneumoniae 2080913]
gi|395613586|gb|EJG73614.1| S4 domain protein [Streptococcus pneumoniae 2082239]
gi|395880913|gb|EJG91964.1| ylmH [Streptococcus pneumoniae GA04672]
gi|395885748|gb|EJG96769.1| ylmH [Streptococcus pneumoniae GA60190]
gi|395887907|gb|EJG98921.1| ylmH [Streptococcus pneumoniae GA54354]
gi|395904572|gb|EJH15486.1| ylmH [Streptococcus pneumoniae GA62331]
gi|395907241|gb|EJH18135.1| ylmH [Streptococcus pneumoniae GA60132]
gi|395909677|gb|EJH20552.1| ylmH [Streptococcus pneumoniae GA62681]
gi|406369979|gb|AFS43669.1| hypothetical protein HMPREF1038_01645 [Streptococcus pneumoniae
gamPNI0373]
gi|444254237|gb|ELU60683.1| S4 domain protein [Streptococcus pneumoniae PCS125219]
gi|444257836|gb|ELU64169.1| S4 domain protein [Streptococcus pneumoniae PCS70012]
gi|444259762|gb|ELU66071.1| S4 domain protein [Streptococcus pneumoniae PNI0002]
gi|444260771|gb|ELU67079.1| S4 domain protein [Streptococcus pneumoniae PNI0006]
gi|444262584|gb|ELU68875.1| S4 domain protein [Streptococcus pneumoniae PCS81218]
gi|444265660|gb|ELU71656.1| S4 domain protein [Streptococcus pneumoniae PNI0008]
gi|444266452|gb|ELU72404.1| S4 domain protein [Streptococcus pneumoniae PNI0007]
gi|444271329|gb|ELU77080.1| S4 domain protein [Streptococcus pneumoniae PNI0010]
gi|444276992|gb|ELU82519.1| S4 domain protein [Streptococcus pneumoniae PNI0009]
gi|444281705|gb|ELU87012.1| S4 domain protein [Streptococcus pneumoniae PNI0360]
gi|444285992|gb|ELU91000.1| S4 domain protein [Streptococcus pneumoniae PNI0427]
Length = 261
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEYLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|15901497|ref|NP_346101.1| hypothetical protein SP_1662 [Streptococcus pneumoniae TIGR4]
gi|111658558|ref|ZP_01409221.1| hypothetical protein SpneT_02000314 [Streptococcus pneumoniae
TIGR4]
gi|148984099|ref|ZP_01817394.1| ylmH protein [Streptococcus pneumoniae SP3-BS71]
gi|148988709|ref|ZP_01820142.1| ylmH protein [Streptococcus pneumoniae SP6-BS73]
gi|148993766|ref|ZP_01823193.1| ylmH protein [Streptococcus pneumoniae SP9-BS68]
gi|148997713|ref|ZP_01825277.1| ylmH protein [Streptococcus pneumoniae SP11-BS70]
gi|149006731|ref|ZP_01830417.1| ylmH protein [Streptococcus pneumoniae SP18-BS74]
gi|149011476|ref|ZP_01832723.1| ylmH protein [Streptococcus pneumoniae SP19-BS75]
gi|168483468|ref|ZP_02708420.1| YlmH protein [Streptococcus pneumoniae CDC1873-00]
gi|168486969|ref|ZP_02711477.1| YlmH protein [Streptococcus pneumoniae CDC1087-00]
gi|168488624|ref|ZP_02712823.1| YlmH protein [Streptococcus pneumoniae SP195]
gi|168575149|ref|ZP_02721112.1| YlmH protein [Streptococcus pneumoniae MLV-016]
gi|182684604|ref|YP_001836351.1| ylmH protein [Streptococcus pneumoniae CGSP14]
gi|194398742|ref|YP_002038276.1| YlmH protein [Streptococcus pneumoniae G54]
gi|221232399|ref|YP_002511552.1| hypothetical protein SPN23F_16630 [Streptococcus pneumoniae ATCC
700669]
gi|298230127|ref|ZP_06963808.1| hypothetical protein SpneCMD_05606 [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298254434|ref|ZP_06978020.1| hypothetical protein SpneCM_02315 [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298503406|ref|YP_003725346.1| 30S ribosomal protein S4e [Streptococcus pneumoniae TCH8431/19A]
gi|303258591|ref|ZP_07344571.1| ylmH protein [Streptococcus pneumoniae SP-BS293]
gi|303262678|ref|ZP_07348618.1| ylmH protein [Streptococcus pneumoniae SP14-BS292]
gi|303263618|ref|ZP_07349540.1| ylmH protein [Streptococcus pneumoniae BS397]
gi|303266379|ref|ZP_07352268.1| ylmH protein [Streptococcus pneumoniae BS457]
gi|303268252|ref|ZP_07354050.1| ylmH protein [Streptococcus pneumoniae BS458]
gi|307068287|ref|YP_003877253.1| hypothetical protein SPAP_1667 [Streptococcus pneumoniae AP200]
gi|387626857|ref|YP_006063033.1| hypothetical protein INV104_14130 [Streptococcus pneumoniae INV104]
gi|387757884|ref|YP_006064863.1| hypothetical protein SPNOXC_14590 [Streptococcus pneumoniae OXC141]
gi|387759775|ref|YP_006066753.1| hypothetical protein SPNINV200_14850 [Streptococcus pneumoniae
INV200]
gi|415700125|ref|ZP_11457839.1| S4 domain protein [Streptococcus pneumoniae 459-5]
gi|415750052|ref|ZP_11477996.1| S4 domain protein [Streptococcus pneumoniae SV35]
gi|415752866|ref|ZP_11479848.1| S4 domain protein [Streptococcus pneumoniae SV36]
gi|418076879|ref|ZP_12714112.1| hypothetical protein SPAR98_1806 [Streptococcus pneumoniae GA47502]
gi|418079085|ref|ZP_12716307.1| hypothetical protein SPAR123_1532 [Streptococcus pneumoniae
4027-06]
gi|418081282|ref|ZP_12718492.1| hypothetical protein SPAR121_1579 [Streptococcus pneumoniae
6735-05]
gi|418101122|ref|ZP_12738205.1| hypothetical protein SPAR128_1541 [Streptococcus pneumoniae
7286-06]
gi|418123985|ref|ZP_12760916.1| hypothetical protein SPAR82_1654 [Streptococcus pneumoniae GA44378]
gi|418128529|ref|ZP_12765422.1| hypothetical protein SPAR144_1609 [Streptococcus pneumoniae NP170]
gi|418139988|ref|ZP_12776813.1| hypothetical protein SPAR28_1627 [Streptococcus pneumoniae GA13338]
gi|418162708|ref|ZP_12799389.1| hypothetical protein SPAR49_1699 [Streptococcus pneumoniae GA17328]
gi|418167262|ref|ZP_12803917.1| hypothetical protein SPAR52_1687 [Streptococcus pneumoniae GA17971]
gi|418176450|ref|ZP_12813041.1| hypothetical protein SPAR71_1685 [Streptococcus pneumoniae GA41437]
gi|418181017|ref|ZP_12817586.1| hypothetical protein SPAR74_1628 [Streptococcus pneumoniae GA41688]
gi|418187641|ref|ZP_12824164.1| hypothetical protein SPAR92_1615 [Streptococcus pneumoniae GA47360]
gi|418189897|ref|ZP_12826409.1| hypothetical protein SPAR94_1661 [Streptococcus pneumoniae GA47373]
gi|418192098|ref|ZP_12828600.1| hypothetical protein SPAR96_1631 [Streptococcus pneumoniae GA47388]
gi|418196321|ref|ZP_12832797.1| hypothetical protein SPAR103_1517 [Streptococcus pneumoniae
GA47688]
gi|418200736|ref|ZP_12837179.1| hypothetical protein SPAR109_1617 [Streptococcus pneumoniae
GA47976]
gi|418219390|ref|ZP_12846055.1| hypothetical protein SPAR145_1678 [Streptococcus pneumoniae NP127]
gi|418221692|ref|ZP_12848345.1| hypothetical protein SPAR104_1625 [Streptococcus pneumoniae
GA47751]
gi|418230433|ref|ZP_12857032.1| hypothetical protein SPAR136_1682 [Streptococcus pneumoniae
EU-NP01]
gi|418234859|ref|ZP_12861435.1| hypothetical protein SPAR17_1642 [Streptococcus pneumoniae GA08780]
gi|418237118|ref|ZP_12863684.1| hypothetical protein SPAR59_1672 [Streptococcus pneumoniae GA19690]
gi|418239188|ref|ZP_12865739.1| hypothetical protein SPAR146_1645 [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419425604|ref|ZP_13965800.1| hypothetical protein SPAR131_1534 [Streptococcus pneumoniae
7533-05]
gi|419443021|ref|ZP_13983048.1| hypothetical protein SPAR26_1580 [Streptococcus pneumoniae GA13224]
gi|419450955|ref|ZP_13990941.1| hypothetical protein SPAR137_0931 [Streptococcus pneumoniae
EU-NP02]
gi|419462825|ref|ZP_14002728.1| hypothetical protein SPAR3_1721 [Streptococcus pneumoniae GA02714]
gi|419471549|ref|ZP_14011408.1| hypothetical protein SPAR15_1502 [Streptococcus pneumoniae GA07914]
gi|419473716|ref|ZP_14013565.1| hypothetical protein SPAR29_1588 [Streptococcus pneumoniae GA13430]
gi|419478299|ref|ZP_14018123.1| hypothetical protein SPAR53_1633 [Streptococcus pneumoniae GA18068]
gi|419482700|ref|ZP_14022487.1| hypothetical protein SPAR65_1620 [Streptococcus pneumoniae GA40563]
gi|419484890|ref|ZP_14024665.1| hypothetical protein SPAR75_1627 [Streptococcus pneumoniae GA43257]
gi|419489143|ref|ZP_14028892.1| hypothetical protein SPAR83_1651 [Streptococcus pneumoniae GA44386]
gi|419491562|ref|ZP_14031300.1| hypothetical protein SPAR88_1556 [Streptococcus pneumoniae GA47179]
gi|419504398|ref|ZP_14044066.1| hypothetical protein SPAR105_1481 [Streptococcus pneumoniae
GA47760]
gi|419510926|ref|ZP_14050567.1| hypothetical protein SPAR142_1593 [Streptococcus pneumoniae NP141]
gi|419515168|ref|ZP_14054793.1| hypothetical protein SPAR152_1533 [Streptococcus pneumoniae
England14-9]
gi|419526379|ref|ZP_14065937.1| S4 domain protein [Streptococcus pneumoniae GA14373]
gi|419530600|ref|ZP_14070127.1| S4 domain protein [Streptococcus pneumoniae GA40028]
gi|419532862|ref|ZP_14072377.1| S4 domain protein [Streptococcus pneumoniae GA47794]
gi|421211534|ref|ZP_15668516.1| S4 domain protein [Streptococcus pneumoniae 2070035]
gi|421215760|ref|ZP_15672681.1| S4 domain protein [Streptococcus pneumoniae 2070109]
gi|421238990|ref|ZP_15695554.1| S4 domain protein [Streptococcus pneumoniae 2071247]
gi|421245500|ref|ZP_15701998.1| S4 domain protein [Streptococcus pneumoniae 2081685]
gi|421247930|ref|ZP_15704409.1| S4 domain protein [Streptococcus pneumoniae 2082170]
gi|421268822|ref|ZP_15719691.1| hypothetical protein SPAR95_1586 [Streptococcus pneumoniae SPAR95]
gi|421275376|ref|ZP_15726205.1| hypothetical protein SPAR117_1384 [Streptococcus pneumoniae
GA52612]
gi|421279437|ref|ZP_15730243.1| hypothetical protein SPAR44_1634 [Streptococcus pneumoniae GA17301]
gi|421287931|ref|ZP_15738694.1| ylmH [Streptococcus pneumoniae GA58771]
gi|421294655|ref|ZP_15745376.1| ylmH [Streptococcus pneumoniae GA56113]
gi|421296496|ref|ZP_15747205.1| ylmH [Streptococcus pneumoniae GA58581]
gi|421301515|ref|ZP_15752185.1| ylmH [Streptococcus pneumoniae GA19998]
gi|421314537|ref|ZP_15765124.1| ylmH [Streptococcus pneumoniae GA47562]
gi|444385531|ref|ZP_21183603.1| S4 domain protein [Streptococcus pneumoniae PCS8203]
gi|4009474|gb|AAC95444.1| YlmH [Streptococcus pneumoniae G54]
gi|14973153|gb|AAK75741.1| ylmH protein [Streptococcus pneumoniae TIGR4]
gi|147756212|gb|EDK63254.1| ylmH protein [Streptococcus pneumoniae SP11-BS70]
gi|147761646|gb|EDK68610.1| ylmH protein [Streptococcus pneumoniae SP18-BS74]
gi|147764466|gb|EDK71397.1| ylmH protein [Streptococcus pneumoniae SP19-BS75]
gi|147923388|gb|EDK74501.1| ylmH protein [Streptococcus pneumoniae SP3-BS71]
gi|147925910|gb|EDK76985.1| ylmH protein [Streptococcus pneumoniae SP6-BS73]
gi|147927722|gb|EDK78746.1| ylmH protein [Streptococcus pneumoniae SP9-BS68]
gi|172043115|gb|EDT51161.1| YlmH protein [Streptococcus pneumoniae CDC1873-00]
gi|182629938|gb|ACB90886.1| ylmH protein [Streptococcus pneumoniae CGSP14]
gi|183570103|gb|EDT90631.1| YlmH protein [Streptococcus pneumoniae CDC1087-00]
gi|183572630|gb|EDT93158.1| YlmH protein [Streptococcus pneumoniae SP195]
gi|183578732|gb|EDT99260.1| YlmH protein [Streptococcus pneumoniae MLV-016]
gi|194358409|gb|ACF56857.1| YlmH protein [Streptococcus pneumoniae G54]
gi|220674860|emb|CAR69435.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
700669]
gi|298239001|gb|ADI70132.1| ribosomal protein S4e [Streptococcus pneumoniae TCH8431/19A]
gi|301794643|emb|CBW37094.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
gi|301800473|emb|CBW33112.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
gi|301802364|emb|CBW35118.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
gi|302636234|gb|EFL66729.1| ylmH protein [Streptococcus pneumoniae SP14-BS292]
gi|302640092|gb|EFL70547.1| ylmH protein [Streptococcus pneumoniae SP-BS293]
gi|302642203|gb|EFL72552.1| ylmH protein [Streptococcus pneumoniae BS458]
gi|302644079|gb|EFL74337.1| ylmH protein [Streptococcus pneumoniae BS457]
gi|302646656|gb|EFL76881.1| ylmH protein [Streptococcus pneumoniae BS397]
gi|306409824|gb|ADM85251.1| hypothetical protein SPAP_1667 [Streptococcus pneumoniae AP200]
gi|353746612|gb|EHD27272.1| hypothetical protein SPAR123_1532 [Streptococcus pneumoniae
4027-06]
gi|353747019|gb|EHD27677.1| hypothetical protein SPAR98_1806 [Streptococcus pneumoniae GA47502]
gi|353752021|gb|EHD32652.1| hypothetical protein SPAR121_1579 [Streptococcus pneumoniae
6735-05]
gi|353770622|gb|EHD51134.1| hypothetical protein SPAR128_1541 [Streptococcus pneumoniae
7286-06]
gi|353795805|gb|EHD76151.1| hypothetical protein SPAR82_1654 [Streptococcus pneumoniae GA44378]
gi|353799028|gb|EHD79351.1| hypothetical protein SPAR144_1609 [Streptococcus pneumoniae NP170]
gi|353826770|gb|EHE06927.1| hypothetical protein SPAR49_1699 [Streptococcus pneumoniae GA17328]
gi|353829254|gb|EHE09388.1| hypothetical protein SPAR52_1687 [Streptococcus pneumoniae GA17971]
gi|353840521|gb|EHE20585.1| hypothetical protein SPAR71_1685 [Streptococcus pneumoniae GA41437]
gi|353843089|gb|EHE23134.1| hypothetical protein SPAR74_1628 [Streptococcus pneumoniae GA41688]
gi|353849626|gb|EHE29631.1| hypothetical protein SPAR92_1615 [Streptococcus pneumoniae GA47360]
gi|353853624|gb|EHE33605.1| hypothetical protein SPAR94_1661 [Streptococcus pneumoniae GA47373]
gi|353855184|gb|EHE35154.1| hypothetical protein SPAR96_1631 [Streptococcus pneumoniae GA47388]
gi|353860332|gb|EHE40277.1| hypothetical protein SPAR103_1517 [Streptococcus pneumoniae
GA47688]
gi|353864277|gb|EHE44195.1| hypothetical protein SPAR109_1617 [Streptococcus pneumoniae
GA47976]
gi|353873750|gb|EHE53609.1| hypothetical protein SPAR145_1678 [Streptococcus pneumoniae NP127]
gi|353875002|gb|EHE54856.1| hypothetical protein SPAR104_1625 [Streptococcus pneumoniae
GA47751]
gi|353885314|gb|EHE65103.1| hypothetical protein SPAR136_1682 [Streptococcus pneumoniae
EU-NP01]
gi|353886481|gb|EHE66263.1| hypothetical protein SPAR17_1642 [Streptococcus pneumoniae GA08780]
gi|353891556|gb|EHE71310.1| hypothetical protein SPAR59_1672 [Streptococcus pneumoniae GA19690]
gi|353892179|gb|EHE71928.1| hypothetical protein SPAR146_1645 [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353904767|gb|EHE80217.1| hypothetical protein SPAR28_1627 [Streptococcus pneumoniae GA13338]
gi|379530257|gb|EHY95497.1| hypothetical protein SPAR3_1721 [Streptococcus pneumoniae GA02714]
gi|379546265|gb|EHZ11404.1| hypothetical protein SPAR15_1502 [Streptococcus pneumoniae GA07914]
gi|379550880|gb|EHZ15976.1| hypothetical protein SPAR29_1588 [Streptococcus pneumoniae GA13430]
gi|379551721|gb|EHZ16815.1| hypothetical protein SPAR26_1580 [Streptococcus pneumoniae GA13224]
gi|379557019|gb|EHZ22066.1| S4 domain protein [Streptococcus pneumoniae GA14373]
gi|379565735|gb|EHZ30727.1| hypothetical protein SPAR53_1633 [Streptococcus pneumoniae GA18068]
gi|379573508|gb|EHZ38463.1| S4 domain protein [Streptococcus pneumoniae GA40028]
gi|379579292|gb|EHZ44199.1| hypothetical protein SPAR65_1620 [Streptococcus pneumoniae GA40563]
gi|379581643|gb|EHZ46527.1| hypothetical protein SPAR75_1627 [Streptococcus pneumoniae GA43257]
gi|379586685|gb|EHZ51535.1| hypothetical protein SPAR83_1651 [Streptococcus pneumoniae GA44386]
gi|379592924|gb|EHZ57739.1| hypothetical protein SPAR88_1556 [Streptococcus pneumoniae GA47179]
gi|379605382|gb|EHZ70133.1| S4 domain protein [Streptococcus pneumoniae GA47794]
gi|379605786|gb|EHZ70536.1| hypothetical protein SPAR105_1481 [Streptococcus pneumoniae
GA47760]
gi|379619065|gb|EHZ83739.1| hypothetical protein SPAR131_1534 [Streptococcus pneumoniae
7533-05]
gi|379622660|gb|EHZ87294.1| hypothetical protein SPAR137_0931 [Streptococcus pneumoniae
EU-NP02]
gi|379631529|gb|EHZ96106.1| hypothetical protein SPAR142_1593 [Streptococcus pneumoniae NP141]
gi|379635717|gb|EIA00276.1| hypothetical protein SPAR152_1533 [Streptococcus pneumoniae
England14-9]
gi|381308513|gb|EIC49356.1| S4 domain protein [Streptococcus pneumoniae SV36]
gi|381314821|gb|EIC55587.1| S4 domain protein [Streptococcus pneumoniae 459-5]
gi|381318346|gb|EIC59071.1| S4 domain protein [Streptococcus pneumoniae SV35]
gi|395572642|gb|EJG33237.1| S4 domain protein [Streptococcus pneumoniae 2070035]
gi|395579967|gb|EJG40462.1| S4 domain protein [Streptococcus pneumoniae 2070109]
gi|395600633|gb|EJG60788.1| S4 domain protein [Streptococcus pneumoniae 2071247]
gi|395608027|gb|EJG68123.1| S4 domain protein [Streptococcus pneumoniae 2081685]
gi|395612946|gb|EJG72979.1| S4 domain protein [Streptococcus pneumoniae 2082170]
gi|395869076|gb|EJG80192.1| hypothetical protein SPAR95_1586 [Streptococcus pneumoniae SPAR95]
gi|395873340|gb|EJG84432.1| hypothetical protein SPAR117_1384 [Streptococcus pneumoniae
GA52612]
gi|395878930|gb|EJG89992.1| hypothetical protein SPAR44_1634 [Streptococcus pneumoniae GA17301]
gi|395886494|gb|EJG97510.1| ylmH [Streptococcus pneumoniae GA58771]
gi|395893224|gb|EJH04211.1| ylmH [Streptococcus pneumoniae GA56113]
gi|395895369|gb|EJH06344.1| ylmH [Streptococcus pneumoniae GA58581]
gi|395899075|gb|EJH10019.1| ylmH [Streptococcus pneumoniae GA19998]
gi|395913222|gb|EJH24075.1| ylmH [Streptococcus pneumoniae GA47562]
gi|429316508|emb|CCP36215.1| conserved hypothetical protein [Streptococcus pneumoniae SPN034156]
gi|429319849|emb|CCP33166.1| conserved hypothetical protein [Streptococcus pneumoniae SPN034183]
gi|429321665|emb|CCP35140.1| conserved hypothetical protein [Streptococcus pneumoniae SPN994039]
gi|429323486|emb|CCP31181.1| conserved hypothetical protein [Streptococcus pneumoniae SPN994038]
gi|444249601|gb|ELU56089.1| S4 domain protein [Streptococcus pneumoniae PCS8203]
Length = 261
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|417687107|ref|ZP_12336381.1| hypothetical protein SPAR68_1670 [Streptococcus pneumoniae GA41301]
gi|418074482|ref|ZP_12711735.1| hypothetical protein SPAR19_1626 [Streptococcus pneumoniae GA11184]
gi|418090016|ref|ZP_12727170.1| hypothetical protein SPAR77_1606 [Streptococcus pneumoniae GA43265]
gi|418105762|ref|ZP_12742818.1| hypothetical protein SPAR85_1690 [Streptococcus pneumoniae GA44500]
gi|418134694|ref|ZP_12771551.1| hypothetical protein SPAR23_0964 [Streptococcus pneumoniae GA11426]
gi|418160365|ref|ZP_12797064.1| hypothetical protein SPAR43_1706 [Streptococcus pneumoniae GA17227]
gi|418174050|ref|ZP_12810662.1| hypothetical protein SPAR67_1656 [Streptococcus pneumoniae GA41277]
gi|418202872|ref|ZP_12839301.1| hypothetical protein SPAR115_1593 [Streptococcus pneumoniae
GA52306]
gi|418217102|ref|ZP_12843782.1| hypothetical protein SPAR147_1574 [Streptococcus pneumoniae
Netherlands15B-37]
gi|419432036|ref|ZP_13972169.1| hypothetical protein SPAR140_1575 [Streptococcus pneumoniae
EU-NP05]
gi|419440844|ref|ZP_13980889.1| hypothetical protein SPAR64_1589 [Streptococcus pneumoniae GA40410]
gi|419498026|ref|ZP_14037733.1| hypothetical protein SPAR99_1587 [Streptococcus pneumoniae GA47522]
gi|421225493|ref|ZP_15682231.1| S4 domain protein [Streptococcus pneumoniae 2070768]
gi|421243589|ref|ZP_15700102.1| S4 domain protein [Streptococcus pneumoniae 2081074]
gi|421266652|ref|ZP_15717532.1| hypothetical protein SPAR27_1553 [Streptococcus pneumoniae SPAR27]
gi|421273317|ref|ZP_15724157.1| hypothetical protein SPAR55_1615 [Streptococcus pneumoniae SPAR55]
gi|332073997|gb|EGI84475.1| hypothetical protein SPAR68_1670 [Streptococcus pneumoniae GA41301]
gi|353748551|gb|EHD29203.1| hypothetical protein SPAR19_1626 [Streptococcus pneumoniae GA11184]
gi|353761207|gb|EHD41779.1| hypothetical protein SPAR77_1606 [Streptococcus pneumoniae GA43265]
gi|353775938|gb|EHD56417.1| hypothetical protein SPAR85_1690 [Streptococcus pneumoniae GA44500]
gi|353822098|gb|EHE02274.1| hypothetical protein SPAR43_1706 [Streptococcus pneumoniae GA17227]
gi|353838006|gb|EHE18087.1| hypothetical protein SPAR67_1656 [Streptococcus pneumoniae GA41277]
gi|353867429|gb|EHE47324.1| hypothetical protein SPAR115_1593 [Streptococcus pneumoniae
GA52306]
gi|353870375|gb|EHE50248.1| hypothetical protein SPAR147_1574 [Streptococcus pneumoniae
Netherlands15B-37]
gi|353901931|gb|EHE77461.1| hypothetical protein SPAR23_0964 [Streptococcus pneumoniae GA11426]
gi|379577914|gb|EHZ42831.1| hypothetical protein SPAR64_1589 [Streptococcus pneumoniae GA40410]
gi|379598859|gb|EHZ63644.1| hypothetical protein SPAR99_1587 [Streptococcus pneumoniae GA47522]
gi|379629117|gb|EHZ93718.1| hypothetical protein SPAR140_1575 [Streptococcus pneumoniae
EU-NP05]
gi|395588980|gb|EJG49302.1| S4 domain protein [Streptococcus pneumoniae 2070768]
gi|395606594|gb|EJG66698.1| S4 domain protein [Streptococcus pneumoniae 2081074]
gi|395866720|gb|EJG77848.1| hypothetical protein SPAR27_1553 [Streptococcus pneumoniae SPAR27]
gi|395873748|gb|EJG84838.1| hypothetical protein SPAR55_1615 [Streptococcus pneumoniae SPAR55]
Length = 252
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEYLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|237650668|ref|ZP_04524920.1| YlmH protein [Streptococcus pneumoniae CCRI 1974]
gi|237822427|ref|ZP_04598272.1| YlmH protein [Streptococcus pneumoniae CCRI 1974M2]
Length = 261
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 10/214 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 31 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 89
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 90 LQEIVYSN-KFEYLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 147
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 148 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 207
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
V+VN+ V K+ T++ GD++SV GR+++ +
Sbjct: 208 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLFQ 241
>gi|418966795|ref|ZP_13518507.1| S4 domain protein [Streptococcus mitis SK616]
gi|383346462|gb|EID24508.1| S4 domain protein [Streptococcus mitis SK616]
Length = 261
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 8/211 (3%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALTSD-PDIVAA 68
++ FLTP + L+ LA +A G + +E R+ + +P+ + D +
Sbjct: 31 YAPFLTPFINPHQEKLLKILAQTYGLAYSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEMS 89
Query: 69 LS-ITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITSL 126
L I + F+ +H LG+++ GI R+ GDI++ E+ AQ ++ + L
Sbjct: 90 LQEIVYSNKFEHLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDGL 148
Query: 127 EKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGD 186
+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 149 KKIGRIPVSLEERPFTEKIDKLEQYRELDLCVSSFRLDVLLSNVLKLSRNQANQLIDKKL 208
Query: 187 VRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 209 VQVNYHMVDKSDYTVQVGDLISVRKFGRLRL 239
>gi|270292377|ref|ZP_06198588.1| YlmH protein [Streptococcus sp. M143]
gi|270278356|gb|EFA24202.1| YlmH protein [Streptococcus sp. M143]
Length = 262
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 7/193 (3%)
Query: 37 AVAQGGYPQAERCRLSVGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGT- 92
V+ G Y E R+ + +P+ + SD +I A L I F+ +H LG+I+
Sbjct: 59 CVSSGEYIHTEFVRVLL-YPDYFSPTLSDFEI-ALLEIRYPSRFEQLTHAKILGTIINQL 116
Query: 93 GIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTK 152
GI R+ GDI++ EK AQ V + ++K+ + VS P +
Sbjct: 117 GIDRKLFGDILV-DEKRAQIFVNRDFIPLFQDGIQKIARLPVSLEECPFTDKIISEINYQ 175
Query: 153 SFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212
+ + +S R+DAL S+ KLSR + LI V+VN+ + K + GD++SV
Sbjct: 176 EQEILISSFRLDALLSSALKLSRKQAGQLIEKKSVQVNYHPIEKLDYLVAVGDLISVRKF 235
Query: 213 GRIKIGEINSTRK 225
GR+KI + N K
Sbjct: 236 GRLKIVKENGQTK 248
>gi|15903549|ref|NP_359099.1| hypothetical protein spr1506 [Streptococcus pneumoniae R6]
gi|15459167|gb|AAL00310.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
Length = 283
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 13 HSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSVGHPEALT---SDPDIV 66
++ FLTP + L+ LA +A G + +E R+ + +P+ SD +I
Sbjct: 53 YAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLL-YPDYFQPEFSDFEIS 111
Query: 67 AALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQGEKGAQFLVVPELADYLITS 125
+ N F+ +H LG+++ GI R+ GDI++ E+ AQ ++ +
Sbjct: 112 LQEIVYSN-KFEYLTHAKILGTVINQLGIERKLFGDILVDEER-AQIMINQQFLLLFQDG 169
Query: 126 LEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNG 185
L+K+G + VS P + + + +S R+D L S KLSR++ LI
Sbjct: 170 LKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKK 229
Query: 186 DVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
V+VN+ V K+ T++ GD++SV GR+++
Sbjct: 230 LVQVNYHVVDKSDYTVQVGDLISVRKFGRLRL 261
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.135 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,521,150,283
Number of Sequences: 23463169
Number of extensions: 141335260
Number of successful extensions: 408077
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 405565
Number of HSP's gapped (non-prelim): 1311
length of query: 236
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 98
effective length of database: 9,121,278,045
effective search space: 893885248410
effective search space used: 893885248410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)