BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026574
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P71020|YLMH_BACSU Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168)
GN=ylmH PE=4 SV=1
Length = 257
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 12/223 (5%)
Query: 14 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 68
+DFL P +E ++ A+ ADV GGY +AER R ++ PE +T SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILFPEYITPEESDFEL-QA 89
Query: 69 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK 128
++ F H LG+++G G+ R+K GDI+ E Q +V + AD++ L +
Sbjct: 90 FNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETAVQLIVSADTADFVAAQLTQ 148
Query: 129 VGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVR 188
G +VS +I L L + +SLR+DA+ ++ + SR K L+ NG V+
Sbjct: 149 AGKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVK 208
Query: 189 VNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN-STRKGKFAV 230
VNW V + GD++S+ G GR + +I T+K K+ V
Sbjct: 209 VNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251
>sp|Q7UXM6|RS4_RHOBA 30S ribosomal protein S4 OS=Rhodopirellula baltica (strain SH1)
GN=rpsD PE=3 SV=2
Length = 202
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 164 DALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
+ + GF +R + I++G RVN VTK G LR GD++ V G+ +K
Sbjct: 97 NVVRRVGFTKTRPQARQGITHGHFRVNGVKVTKPGYMLRAGDLIEVRGRENLK 149
>sp|C5CGH5|RS4_KOSOT 30S ribosomal protein S4 OS=Kosmotoga olearia (strain TBF 19.5.1)
GN=rpsD PE=3 SV=1
Length = 208
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 155 KTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 214
K +E+ L + + GF SR + L+S+G V VN V K ++R GDI+ + K +
Sbjct: 94 KVLESRLD-NVVYRMGFASSRKQARQLVSHGHVLVNGRKVNKASYSVRPGDIIEIKEKSK 152
Query: 215 IKI 217
K+
Sbjct: 153 AKV 155
>sp|A1R043|RS4_BORT9 30S ribosomal protein S4 OS=Borrelia turicatae (strain 91E135)
GN=rpsD PE=3 SV=1
Length = 208
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 162 RVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
R+D + AGF +SR+ ++S+G + +N VT TLR D++ V K R+K
Sbjct: 96 RIDNVVYRAGFAISRAHARQIVSHGIIMLNGRRVTIPSITLRANDMIQVKEKDRLK 151
>sp|Q9Z993|VATA_CHLPN V-type ATP synthase alpha chain OS=Chlamydia pneumoniae GN=atpA
PE=3 SV=1
Length = 591
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 162 RVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215
R++ LA L R K VN IS+ ++ N+T V G TLR GD++ +GR
Sbjct: 99 RLEVLAEDSSFLQRGKHVNAISDHNLW-NYTPVASVGDTLRRGDLLGTVPEGRF 151
>sp|B2S0W1|RS4_BORHD 30S ribosomal protein S4 OS=Borrelia hermsii (strain DAH) GN=rpsD
PE=3 SV=1
Length = 208
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 162 RVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
R+D + AGF +SR+ ++S+G + +N VT TLR DI+ V K +K
Sbjct: 96 RIDNVVYRAGFAISRAHARQIVSHGIIMLNGRRVTIPSITLRANDIIQVKEKDSLK 151
>sp|P0A2V1|NDVA_RHIRD Beta-(1-->2)glucan export ATP-binding/permease protein NdvA
OS=Rhizobium radiobacter GN=ndvA PE=1 SV=1
Length = 588
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 89 ILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV--SCTRIPLLALEY 146
++G GI IG ++ K Q V + + NVSV S RI E
Sbjct: 162 LIGLGIVYWFIGKWVMGRTKDGQASVEEHYHSVFAHVSDSISNVSVLHSYNRI-----EA 216
Query: 147 EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 206
E KSF S + L F + ++ + +S + V T + KNG LR GD+
Sbjct: 217 ETKALKSFTEKLLSAQYPVLDWWAFASALNRTASTVSMMIILVIGTVLVKNGE-LRVGDV 275
Query: 207 VSVSGKGRIKIGEINSTRK 225
++ G + IG ++ R+
Sbjct: 276 IAFIGFANLLIGRLDQMRQ 294
>sp|P0A2V0|NDVA_AGRT5 Beta-(1-->2)glucan export ATP-binding/permease protein NdvA
OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
GN=ndvA PE=3 SV=1
Length = 588
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 89 ILGTGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSV--SCTRIPLLALEY 146
++G GI IG ++ K Q V + + NVSV S RI E
Sbjct: 162 LIGLGIVYWFIGKWVMGRTKDGQASVEEHYHSVFAHVSDSISNVSVLHSYNRI-----EA 216
Query: 147 EPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 206
E KSF S + L F + ++ + +S + V T + KNG LR GD+
Sbjct: 217 ETKALKSFTEKLLSAQYPVLDWWAFASALNRTASTVSMMIILVIGTVLVKNGE-LRVGDV 275
Query: 207 VSVSGKGRIKIGEINSTRK 225
++ G + IG ++ R+
Sbjct: 276 IAFIGFANLLIGRLDQMRQ 294
>sp|A8F4T8|RS4_THELT 30S ribosomal protein S4 OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=rpsD PE=3 SV=1
Length = 209
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 162 RVDALASA-GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 214
RVD + GF +SR + L+++G VN + LR GDIV V K R
Sbjct: 99 RVDNIVYRLGFAISRRQARQLVTHGHFSVNGVKIDIPSYKLRPGDIVEVREKSR 152
>sp|P75485|Y292_MYCPN Uncharacterized RNA pseudouridine synthase MG209 homolog
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=MPN_292 PE=3 SV=1
Length = 309
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 156 TIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 210
++ + R+D + LSR K+ LI +G V VN +TKNG ++ D V V+
Sbjct: 6 SVTTAQRLDTFLATLLNLSRVKVAKLIVDGLVSVNGKKITKNGWLVQPEDRVHVN 60
>sp|Q9P0P8|CF203_HUMAN Uncharacterized protein C6orf203 OS=Homo sapiens GN=C6orf203 PE=1
SV=1
Length = 240
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 147 EPPRTKSFKTIEA---SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRT 203
+P K++K +E S R D + G + R+K+ + G++R+N + K T++
Sbjct: 125 DPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSRTVKV 184
Query: 204 GDIVSV 209
GD + +
Sbjct: 185 GDTLDL 190
>sp|B5RMG4|RS4_BORDL 30S ribosomal protein S4 OS=Borrelia duttonii (strain Ly) GN=rpsD
PE=3 SV=1
Length = 208
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 162 RVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
R+D + AGF +SR+ ++S+G + +N VT TLR DI+ V K +K
Sbjct: 96 RIDNIVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSITLRANDIIQVKEKDSLK 151
>sp|Q9GZM7|TINAL_HUMAN Tubulointerstitial nephritis antigen-like OS=Homo sapiens
GN=TINAGL1 PE=1 SV=1
Length = 467
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 57 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 102
E DPD++ A++ GN+G+Q +H F G L GI R ++G I
Sbjct: 138 EPCLVDPDMIKAIN-QGNYGWQAGNHSAFWGMTLDEGI-RYRLGTI 181
>sp|Q99JR5|TINAL_MOUSE Tubulointerstitial nephritis antigen-like OS=Mus musculus
GN=Tinagl1 PE=1 SV=1
Length = 466
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 57 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 102
E DPD++ A++ GN+G+Q +H F G L GI R ++G I
Sbjct: 137 EPCLVDPDMIKAIN-RGNYGWQAGNHSAFWGMTLDEGI-RYRLGTI 180
>sp|B5RPW0|RS4_BORRA 30S ribosomal protein S4 OS=Borrelia recurrentis (strain A1)
GN=rpsD PE=3 SV=1
Length = 208
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 162 RVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216
R+D + AGF +SR+ ++S+G + +N VT TLR DI+ V K K
Sbjct: 96 RIDNIVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSITLRANDIIQVKEKDSFK 151
>sp|Q3Z8V6|SYY_DEHE1 Tyrosine--tRNA ligase OS=Dehalococcoides ethenogenes (strain 195)
GN=tyrS PE=3 SV=1
Length = 396
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 163 VDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 214
+D + A S+S+ L+ G V +N ++ GTT++ GDI+ +GK R
Sbjct: 341 IDFIIKADLAKSKSEARRLLEQGGVEINSAKISDPGTTVKCGDIIK-AGKRR 391
>sp|Q9ZL98|Y745_HELPJ Uncharacterized RNA pseudouridine synthase jhp_0682 OS=Helicobacter
pylori (strain J99) GN=jhp_0682 PE=3 SV=1
Length = 327
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 162 RVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 209
R+D + ++S+++++NLI G V V K G L+ GD +++
Sbjct: 13 RIDEFLAKELQISKNQVLNLIKEGLVFCQKKEVKKGGLALKEGDAITL 60
>sp|P82987|ATL3_HUMAN ADAMTS-like protein 3 OS=Homo sapiens GN=ADAMTSL3 PE=2 SV=4
Length = 1691
Score = 32.7 bits (73), Expect = 2.5, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 140 PLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVN----LISNGDVRVNWTTVT 195
P+L + +PP KTI + + + + R++++N LI+ + WT
Sbjct: 1177 PVLMRQSQPPSISFNKTINSRI-----GNTVYITKRTEVINILCDLITPSEATYTWT--- 1228
Query: 196 KNGTTLRTGDIVSVSGKGRIKIGEINSTRK 225
K+GT L+ + + G G+I+I N TRK
Sbjct: 1229 KDGTLLQPSVKIILDGTGKIQIQ--NPTRK 1256
>sp|Q8R7Y1|RS4_THETN 30S ribosomal protein S4 OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=rpsD PE=3 SV=1
Length = 206
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 164 DALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 214
+ + GF +SR++ L+S+G + VN V ++ GD++SV R
Sbjct: 102 NVVYRLGFAVSRAQARQLVSHGHIEVNGKKVDIPSYLVKPGDVISVKESSR 152
>sp|B7IHX2|RS4_THEAB 30S ribosomal protein S4 OS=Thermosipho africanus (strain TCF52B)
GN=rpsD PE=3 SV=1
Length = 209
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 151 TKSFKTIEASLRVD-ALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 209
T+ ++ R+D + GF ++R+ L+++G V VN VT +R GD++ +
Sbjct: 88 TRENLVVQVERRLDNVVYRLGFAVNRTTARQLVNHGHVLVNGRKVTIPSYQVRPGDVIEI 147
Query: 210 SGKGR 214
K R
Sbjct: 148 REKSR 152
>sp|B0K5S0|RS4_THEPX 30S ribosomal protein S4 OS=Thermoanaerobacter sp. (strain X514)
GN=rpsD PE=3 SV=1
Length = 206
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 170 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 214
GF SR + L+S+G + VN V ++ GD++SV K R
Sbjct: 108 GFAASRPQARQLVSHGHIEVNGKKVDIPSFLVKPGDVISVREKSR 152
>sp|B0KCM7|RS4_THEP3 30S ribosomal protein S4 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rpsD PE=3 SV=1
Length = 206
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 170 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 214
GF SR + L+S+G + VN V ++ GD++SV K R
Sbjct: 108 GFAASRPQARQLVSHGHIEVNGKKVDIPSFLVKPGDVISVREKSR 152
>sp|B5YDW9|RS4_DICT6 30S ribosomal protein S4 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rpsD PE=3 SV=1
Length = 206
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 170 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
G+ LSR + L+S+G + VN V L+ GD+V + K I + E
Sbjct: 108 GWALSRDQARQLVSHGKIAVNGKRVNIPSYNLKPGDVVELLDKDLIPVQE 157
>sp|B0CZ32|MTNB_LACBS Methylthioribulose-1-phosphate dehydratase OS=Laccaria bicolor
(strain S238N-H82 / ATCC MYA-4686) GN=MDE1 PE=3 SV=1
Length = 237
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218
AS DAL ++ L + L+ + ++ W T T G +RTGD V ++ G ++
Sbjct: 2 ASQDADALVTSSDPLHPANLIPELCRSFYQLGWVTGTGGGICIRTGDKVFIAPSG-VQKE 60
Query: 219 EINSTR 224
I ST
Sbjct: 61 RIESTH 66
>sp|Q58615|Y1218_METJA Uncharacterized protein MJ1218 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1218 PE=4 SV=1
Length = 425
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 93 GIAREKIGDIILQGEK-GAQFLVVPELADYLITSLEK---------VGNVSVSCTRIPLL 142
I +++G I + EK QFL +++Y L K + + +IPL
Sbjct: 314 AILYQRVGRFIFKSEKIDKQFLFYLLMSEYFKKELSKLLIGTDQPYIRTPVLLNIKIPLP 373
Query: 143 ALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRV 189
LE + + K+I+ + + + ++ K++NL+ G +RV
Sbjct: 374 HLEEQKAMAERLKSIDNLIEIKRKEKEQIEKAKKKIMNLLLTGKIRV 420
>sp|Q9CQF4|CF203_MOUSE Uncharacterized protein C6orf203 homolog OS=Mus musculus PE=1 SV=1
Length = 240
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 148 PPRTKSFKTIEA---SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG 204
P K +K +E S R D + G + R+K+ + G++R+N + K T++ G
Sbjct: 126 PGVAKDYKDLEKVVQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSRTVKVG 185
Query: 205 DIVSV 209
D + +
Sbjct: 186 DTLDL 190
>sp|B8E1F9|RS4_DICTD 30S ribosomal protein S4 OS=Dictyoglomus turgidum (strain Z-1310 /
DSM 6724) GN=rpsD PE=3 SV=1
Length = 206
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 170 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219
G+ LSR++ ++S+G + VN V L+ GD+V + K I + E
Sbjct: 108 GWALSRAQARQIVSHGKIAVNGKRVNIPSYNLKPGDVVELLDKDLIPVQE 157
>sp|B5EM98|RS4_ACIF5 30S ribosomal protein S4 OS=Acidithiobacillus ferrooxidans (strain
ATCC 53993) GN=rpsD PE=3 SV=1
Length = 208
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 170 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
GF SR++ ++ +G + VN V +R GD+VSV+ R I
Sbjct: 108 GFGASRAEARQVVRHGHILVNGRRVDIPSYQVRAGDVVSVAEAARTHI 155
>sp|B7J4A3|RS4_ACIF2 30S ribosomal protein S4 OS=Acidithiobacillus ferrooxidans (strain
ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpsD PE=3 SV=1
Length = 208
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 170 GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217
GF SR++ ++ +G + VN V +R GD+VSV+ R I
Sbjct: 108 GFGASRAEARQVVRHGHILVNGRRVDIPSYQVRAGDVVSVAEAARTHI 155
>sp|A3QGU0|PNP_SHELP Polyribonucleotide nucleotidyltransferase OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=pnp PE=3 SV=1
Length = 700
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 48 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGS----------ILGTGIARE 97
R R+ G+P +PD+V ALS+ G P +HG L + LGT +
Sbjct: 305 RSRIIAGNPRIDGREPDMVRALSVMA--GVLPRTHGSALFTRGETQALVTCTLGTERDAQ 362
Query: 98 KIGDIILQGEKGAQFLVVPELADYLITSLEKVGN 131
KI I+ GE+ ++F++ Y + VG+
Sbjct: 363 KIDSIM--GEQTSRFMLHYNFPPYSVGETGMVGS 394
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,421,010
Number of Sequences: 539616
Number of extensions: 3448931
Number of successful extensions: 10187
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10163
Number of HSP's gapped (non-prelim): 36
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)