Query 026574
Match_columns 236
No_of_seqs 253 out of 1633
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 16:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fph_X YLMH; division protein, 100.0 5.3E-47 1.8E-51 313.4 7.4 141 1-144 20-163 (165)
2 2vqe_D 30S ribosomal protein S 99.1 1.6E-11 5.3E-16 104.5 0.6 87 109-214 66-153 (209)
3 1dm9_A Hypothetical 15.5 KD pr 99.0 2.2E-09 7.4E-14 85.1 9.2 62 158-220 6-68 (133)
4 2k6p_A Uncharacterized protein 98.9 2.7E-10 9.2E-15 84.3 1.8 63 161-224 1-65 (92)
5 1c05_A Ribosomal protein S4 de 98.8 1E-08 3.5E-13 83.5 6.3 56 159-214 49-105 (159)
6 3bbn_D Ribosomal protein S4; s 98.7 3.1E-09 1.1E-13 89.7 2.5 58 159-216 87-145 (201)
7 3r8n_D 30S ribosomal protein S 98.7 1.5E-09 5.2E-14 91.9 0.3 58 158-215 92-150 (205)
8 1p9k_A ORF, hypothetical prote 98.7 1.2E-09 4.2E-14 78.7 -0.6 55 158-212 18-73 (79)
9 2cqj_A BRMS2, U3 small nucleol 98.5 3.2E-08 1.1E-12 70.2 2.6 51 160-210 7-60 (71)
10 1ksk_A Ribosomal small subunit 98.5 5.5E-08 1.9E-12 83.3 4.3 53 159-211 2-54 (234)
11 3hp7_A Hemolysin, putative; st 98.5 9.8E-08 3.4E-12 84.8 4.3 54 159-212 5-61 (291)
12 3dh3_A Ribosomal large subunit 98.4 1.6E-07 5.5E-12 83.4 5.5 53 158-211 4-56 (290)
13 3j20_D 30S ribosomal protein S 98.4 5.9E-08 2E-12 80.5 1.8 55 160-214 102-159 (180)
14 1vio_A Ribosomal small subunit 98.4 1.4E-07 4.8E-12 81.3 4.2 52 160-211 2-53 (243)
15 2xzm_D Ribosomal protein S4 co 98.4 1.4E-07 4.6E-12 78.5 3.7 52 158-209 104-158 (181)
16 1v9f_A Ribosomal large subunit 98.2 1.4E-07 4.7E-12 84.7 0.0 55 158-212 14-69 (325)
17 3u5c_J 40S ribosomal protein S 98.0 1.4E-06 4.7E-11 73.1 1.0 52 160-211 106-160 (197)
18 3iz6_C 40S ribosomal protein S 97.3 7.6E-07 2.6E-11 74.6 -9.8 56 159-214 107-163 (195)
19 3kbg_A 30S ribosomal protein S 97.0 0.0014 4.6E-08 55.5 6.8 50 160-209 7-58 (213)
20 3j20_E 30S ribosomal protein S 96.9 0.0027 9.1E-08 54.7 7.9 53 159-211 41-95 (243)
21 2jan_A Tyrosyl-tRNA synthetase 95.3 0.018 6.3E-07 53.5 5.3 45 162-206 358-402 (432)
22 2g0c_A ATP-dependent RNA helic 95.2 0.019 6.4E-07 40.0 3.9 59 77-136 10-71 (76)
23 1h3f_A Tyrosyl-tRNA synthetase 94.3 0.14 4.7E-06 47.6 8.4 55 162-216 371-426 (432)
24 1jil_A Tyrrs, tyrosyl-tRNA syn 93.9 0.01 3.5E-07 54.9 0.0 57 161-221 353-410 (420)
25 2ts1_A Tyrosyl-tRNA synthetase 92.9 0.018 6.3E-07 53.2 0.0 45 163-207 355-399 (419)
26 2ktl_A Tyrosyl-tRNA synthetase 90.9 0.15 5E-06 41.4 3.1 34 162-195 52-85 (164)
27 2xzm_W 40S ribosomal protein S 89.3 1.4 4.7E-05 38.1 8.1 62 159-220 40-116 (260)
28 3u5c_E RP5, S7, YS6, 40S ribos 89.0 0.39 1.3E-05 41.6 4.4 62 159-220 40-114 (261)
29 3iz6_D 40S ribosomal protein S 88.5 0.31 1.1E-05 42.3 3.5 62 159-220 40-114 (265)
30 1fm0_D Molybdopterin convertin 80.0 2.6 9E-05 28.9 4.6 32 177-209 41-74 (81)
31 2q5w_D Molybdopterin convertin 78.8 1.9 6.5E-05 29.3 3.6 24 186-210 48-71 (77)
32 3rpf_C Molybdopterin convertin 77.4 1.6 5.5E-05 29.8 2.8 28 182-209 40-67 (74)
33 3po0_A Small archaeal modifier 76.5 2.3 8E-05 29.8 3.6 24 185-209 59-82 (89)
34 1ryj_A Unknown; beta/alpha pro 74.0 3.2 0.00011 28.1 3.6 42 160-210 23-64 (70)
35 1rws_A Hypothetical protein PF 69.9 1.6 5.5E-05 30.2 1.3 41 160-209 30-70 (77)
36 2cu3_A Unknown function protei 68.4 3.4 0.00012 27.4 2.6 44 159-210 12-58 (64)
37 1vjk_A Molybdopterin convertin 67.4 3.2 0.00011 29.9 2.5 23 186-209 69-91 (98)
38 2hj1_A Hypothetical protein; s 67.0 1.9 6.4E-05 31.7 1.2 50 159-210 34-83 (97)
39 3dwg_C 9.5 kDa culture filtrat 66.5 3.8 0.00013 29.0 2.7 24 186-209 60-86 (93)
40 2kl0_A Putative thiamin biosyn 64.7 2.8 9.5E-05 28.9 1.6 44 159-210 13-59 (73)
41 2k5p_A THis protein, thiamine- 64.2 3.2 0.00011 29.0 1.9 44 160-210 17-63 (78)
42 1tyg_B YJBS; alpha beta barrel 63.5 5.8 0.0002 28.4 3.2 42 161-210 37-81 (87)
43 3hvz_A Uncharacterized protein 63.1 6.1 0.00021 27.6 3.2 51 152-210 16-66 (78)
44 1f0z_A THis protein; ubiquitin 61.5 3.8 0.00013 27.2 1.8 25 186-210 33-60 (66)
45 2np2_A HBB; protein-DNA comple 60.4 3.6 0.00012 30.3 1.7 44 169-220 25-68 (108)
46 2o97_B NS1, HU-1, DNA-binding 59.9 1.8 6.1E-05 30.9 -0.1 46 166-219 9-54 (90)
47 4ejq_A Kinesin-like protein KI 59.8 9.3 0.00032 29.9 4.1 33 185-218 110-142 (154)
48 2g1e_A Hypothetical protein TA 59.1 4.6 0.00016 28.1 2.0 24 186-209 57-83 (90)
49 3fm8_A Kinesin-like protein KI 58.7 10 0.00035 28.7 4.1 32 185-217 90-121 (124)
50 3rhi_A DNA-binding protein HU; 57.8 1.5 5.1E-05 31.6 -0.9 45 167-219 13-57 (93)
51 4egx_A Kinesin-like protein KI 56.9 11 0.00037 30.6 4.1 33 185-218 140-172 (184)
52 1mul_A NS2, HU-2, DNA binding 56.1 2.1 7.3E-05 30.4 -0.3 45 167-219 10-54 (90)
53 1wv3_A Similar to DNA segregat 55.1 9.8 0.00034 32.0 3.7 33 183-217 133-166 (238)
54 2kmm_A Guanosine-3',5'-BIS(dip 53.3 10 0.00036 25.1 3.0 23 187-210 39-61 (73)
55 2qjl_A URM1, ubiquitin-related 52.5 9.4 0.00032 27.4 2.8 24 186-209 66-92 (99)
56 1p71_A DNA-binding protein HU; 51.9 2.1 7.3E-05 30.7 -0.9 45 167-219 10-54 (94)
57 3c4i_A DNA-binding protein HU 50.4 2.3 8E-05 30.9 -0.9 45 167-219 10-54 (99)
58 3gku_A Probable RNA-binding pr 50.2 13 0.00045 31.3 3.7 51 1-53 157-207 (225)
59 2l52_A Methanosarcina acetivor 49.4 6.9 0.00024 28.2 1.6 24 186-209 66-92 (99)
60 3uv0_A Mutator 2, isoform B; F 47.5 4.7 0.00016 29.9 0.4 22 183-206 60-81 (102)
61 1owf_A IHF-alpha, integration 46.6 2.9 9.9E-05 30.3 -0.9 45 167-219 12-56 (99)
62 2l32_A Small archaeal modifier 46.3 6.9 0.00023 26.9 1.1 42 159-210 19-60 (74)
63 1owf_B IHF-beta, integration H 44.7 4.1 0.00014 29.1 -0.3 45 167-219 10-55 (94)
64 1b8z_A Protein (histonelike pr 43.7 2.2 7.5E-05 30.3 -1.9 45 167-219 10-54 (90)
65 2k9x_A Tburm1, uncharacterized 40.8 13 0.00043 27.7 1.9 23 187-209 70-95 (110)
66 1v8c_A MOAD related protein; r 39.5 17 0.0006 28.9 2.7 25 186-210 54-81 (168)
67 1wln_A Afadin; beta sandwich, 38.6 22 0.00076 26.2 3.0 35 183-218 78-112 (120)
68 3gqs_A Adenylate cyclase-like 38.5 15 0.00051 26.5 2.0 32 185-218 69-100 (106)
69 2jqj_A DNA damage response pro 35.6 25 0.00084 27.1 3.0 29 183-211 85-113 (151)
70 3po8_A RV0020C protein, putati 35.1 22 0.00075 25.2 2.4 23 185-209 65-87 (100)
71 1wgk_A Riken cDNA 2900073H19 p 33.5 13 0.00045 27.7 1.0 24 186-209 75-101 (114)
72 1i3z_A EWS/FLI1 activated tran 33.5 1.1E+02 0.0038 21.3 6.1 57 172-231 9-66 (103)
73 3hx1_A SLR1951 protein; P74513 32.6 46 0.0016 25.0 4.0 26 185-212 82-107 (131)
74 4h87_A Kanadaptin; FHA domain 31.6 42 0.0014 25.3 3.6 25 184-209 93-119 (130)
75 2xt9_B Putative signal transdu 28.8 37 0.0013 24.7 2.8 31 184-217 72-102 (115)
76 2pie_A E3 ubiquitin-protein li 28.3 49 0.0017 24.9 3.5 26 185-211 75-102 (138)
77 1d4t_A T cell signal transduct 27.9 1.1E+02 0.0038 21.4 5.3 57 172-231 10-67 (104)
78 2iie_A Integration HOST factor 27.8 11 0.00039 30.9 -0.3 45 167-219 56-100 (204)
79 1r21_A Antigen KI-67; beta san 27.5 29 0.00098 25.8 2.0 32 185-218 75-106 (128)
80 1g6g_A Protein kinase RAD53; b 26.5 47 0.0016 24.6 3.1 28 184-211 78-106 (127)
81 1uhe_A Aspartate 1-decarboxyla 24.7 25 0.00086 25.7 1.1 28 184-215 40-67 (97)
82 3plx_B Aspartate 1-decarboxyla 24.4 26 0.00087 25.9 1.1 28 184-215 41-68 (102)
83 2ker_A Parvulustat, alpha-amyl 23.9 19 0.00065 25.0 0.3 22 190-213 37-58 (78)
84 1g2y_A Hepatocyte nuclear fact 23.8 23 0.0008 20.5 0.6 17 82-98 9-25 (32)
85 1gxc_A CHK2, CDS1, serine/thre 23.3 45 0.0016 25.5 2.5 28 185-212 103-131 (149)
86 2ysx_A Signaling inositol poly 23.2 1.7E+02 0.0057 21.1 5.6 56 172-231 16-73 (119)
87 1g3g_A Protien kinase SPK1; FH 23.2 58 0.002 25.4 3.1 29 183-212 105-135 (164)
88 1ka6_A SH2 domain protein 1A; 23.0 1.1E+02 0.0038 22.5 4.6 57 172-231 10-67 (128)
89 3k2m_A Proto-oncogene tyrosine 22.8 1.8E+02 0.0062 20.5 5.7 55 172-230 11-66 (112)
90 1vc3_B L-aspartate-alpha-decar 22.3 29 0.00098 25.3 1.0 28 184-215 42-69 (96)
91 2hc8_A PACS, cation-transporti 22.3 48 0.0016 24.3 2.3 25 187-211 16-40 (113)
92 2l48_A N-acetylmuramoyl-L-alan 22.2 86 0.003 22.3 3.5 36 76-115 26-61 (85)
93 2z0t_A Putative uncharacterize 22.0 74 0.0025 23.5 3.3 32 179-210 12-43 (109)
94 1lgp_A Cell cycle checkpoint p 21.9 30 0.001 25.1 1.1 27 185-211 68-95 (116)
95 2kb3_A Oxoglutarate dehydrogen 21.7 41 0.0014 25.8 1.9 23 185-209 108-130 (143)
96 1xne_A Hypothetical protein PF 21.6 37 0.0013 25.3 1.6 41 180-220 14-54 (113)
97 3idw_A Actin cytoskeleton-regu 21.1 13 0.00045 25.8 -1.0 13 88-103 43-55 (72)
98 1r1p_A GRB2-related adaptor pr 20.9 1.4E+02 0.0049 20.8 4.7 55 172-230 15-70 (100)
99 1mzk_A Kinase associated prote 20.8 47 0.0016 25.1 2.0 36 184-220 75-119 (139)
100 3oug_A Aspartate 1-decarboxyla 20.5 34 0.0012 25.7 1.1 29 184-216 69-97 (114)
No 1
>2fph_X YLMH; division protein, bacteria, GRAM+, DNA binding protein; 1.70A {Streptococcus pneumoniae}
Probab=100.00 E-value=5.3e-47 Score=313.37 Aligned_cols=141 Identities=19% Similarity=0.327 Sum_probs=129.5
Q ss_pred ChhhhhcCCceEEecCCChHHHHHHHHHhcccCCeeEEEeCCCccceeeEEEeeCCCCCCC--CccceEEEEeecCCCcc
Q 026574 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS--DPDIVAALSITGNFGFQ 78 (236)
Q Consensus 1 ~~~~~~~~~~~~~T~FL~p~~~~~~~~~~~~~~~~~~~~~GGy~~AER~~~~~~~~~~~~~--~~~~i~~l~i~~~~kf~ 78 (236)
++++|.++|.+++|+||||+++.++.+++++. ++++.+||||++|||+|++|+ |+|++. .++|+++++|+||+||.
T Consensus 20 ~~~~a~~~~~~~~T~FL~p~e~~i~~~i~~~~-~~~~~~~GGy~~AER~r~~i~-p~~~~~~~~d~~i~~l~i~~~~kF~ 97 (165)
T 2fph_X 20 WIKKVEDSYAPFLTPFINPHQEKLLKILAKTY-GLACSSSGEFVSSEYVRVLLY-PDYFQPEFSDFEISLQEIVYSNKFE 97 (165)
T ss_dssp HHHHHHHHTSCEECCCBCHHHHHHHHHHHHHT-TCEEEEGGGTSCCSSBCEEEE-CTTCCCCGGGGCEEEEEEESCCCCH
T ss_pred HHHHHHHhCCEEECCCCCHHHHHHHHHHHhcc-CcEEEEeCCCcHHheeEEEEe-cccccCcccCCceEEEEEecccccc
Confidence 37889999999999999999999999988876 799999999999999999997 666542 23489999999999999
Q ss_pred CCCccchHHHHHc-CCCCccccccEEEecCCeEEEEechhhHHHHHhccceecceEEEEEEecCccc
Q 026574 79 PCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLAL 144 (236)
Q Consensus 79 ~l~Hrd~LGalm~-lGi~Re~iGDI~~~~~~~~~~~v~~~i~~~i~~~l~kI~~~~V~~~~~~~~~~ 144 (236)
+|+|||||||||| |||+|+++|||++.++ +||++|+++|++||.+||+|||+++|++++++++++
T Consensus 98 ~l~Hrd~LGaLm~~LGI~Re~iGDI~v~~~-~~qv~v~~~i~~~i~~nl~kIg~~~V~~~~i~~~~l 163 (165)
T 2fph_X 98 YLTHAKILGTVINQLGIERKLFGDILVDEE-RAQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEK 163 (165)
T ss_dssp HHHHHHHHSCSSSCCCCCGGGEEEEECSSS-CCEEEEEGGGHHHHHHHCCEETTEECEEEECCGGGC
T ss_pred cCCHHHHHHHHHHhcCCCHhhcCCEEEECC-EEEEEEcHHHHHHHHHHHhhccCeeEEEEEeCHHHc
Confidence 9999999999999 9999999999999665 899999999999999999999999999999998775
No 2
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=99.07 E-value=1.6e-11 Score=104.53 Aligned_cols=87 Identities=22% Similarity=0.265 Sum_probs=75.1
Q ss_pred eEEEEechhhHHHHHhccceecceEEEEEEecCcccccCCCCceEEeeeccchHHHHHHHh-CCCcCHHHHHHHHHCCcE
Q 026574 109 GAQFLVVPELADYLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASA-GFKLSRSKLVNLISNGDV 187 (236)
Q Consensus 109 ~~~~~v~~~i~~~i~~~l~kI~~~~V~~~~~~~~~~~~~~~~~~~~~~~v~s~RLD~ils~-~~~~SR~~a~~lI~~G~V 187 (236)
..|.++.+++.+|+..+++++|++++.+. ...++|||.+|++ .++.||+.|+++|.+|.|
T Consensus 66 ~~Yg~~e~q~~~y~~~a~~~~g~t~~~l~-------------------~~le~RLD~~L~~~g~~~SR~~arqLI~~G~V 126 (209)
T 2vqe_D 66 RIYGISERQFRNLFEEASKKKGVTGSVFL-------------------GLLESRLDNVVYRLGFAVSRRQARQLVRHGHI 126 (209)
T ss_dssp HHHTCCHHHHHHHHHHHHHSSSCHHHHHH-------------------HHHHTBHHHHHHHTTSSSSHHHHHHHHHTTCE
T ss_pred HHhCccHHHHHHHHHHHHHccCCcchHHH-------------------HhHHHHHHHHHHHhcCcCCHHHHHHHHHCCCE
Confidence 45668899999999999999998877530 1235899999975 468899999999999999
Q ss_pred EECCEEecCCCcccCCCCEEEEeeCCe
Q 026574 188 RVNWTTVTKNGTTLRTGDIVSVSGKGR 214 (236)
Q Consensus 188 ~VNg~~~~~~~~~v~~GD~Isvrg~Gr 214 (236)
.|||+.+++|++.|++||.|+|++.++
T Consensus 127 ~VNG~~v~~ps~~V~~gD~I~V~~~~r 153 (209)
T 2vqe_D 127 TVNGRRVDLPSYRVRPGDEIAVAEKSR 153 (209)
T ss_dssp EETTEECCCTTCBCCTTCEEEECGGGT
T ss_pred EECCEEeCcCCcCcCCCCEEEEcCccc
Confidence 999999988999999999999998765
No 3
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.97 E-value=2.2e-09 Score=85.11 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=55.8
Q ss_pred ccchHHHHHHHhC-CCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEEe
Q 026574 158 EASLRVDALASAG-FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 220 (236)
Q Consensus 158 v~s~RLD~ils~~-~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~~ 220 (236)
.+++|||.||+.. +..||+.++.+|.+|+|+|||+.+ ++++.|++||.|+|...+.....++
T Consensus 6 ~~~~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~~~v 68 (133)
T 1dm9_A 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVIV 68 (133)
T ss_dssp TTCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEEEEE
T ss_pred ccchhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCCceeeEEE
Confidence 4579999999875 567999999999999999999998 7999999999999999888776666
No 4
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.91 E-value=2.7e-10 Score=84.32 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=55.6
Q ss_pred hHHHHHHHhCC-CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEEe-eccc
Q 026574 161 LRVDALASAGF-KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI-NSTR 224 (236)
Q Consensus 161 ~RLD~ils~~~-~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~~-~~TK 224 (236)
+|||.+|+... ..||++++++|.+|.|+|||+.+ ++++.|++||.|+|...++....++ +.||
T Consensus 1 ~RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~~~~~~~~~~ 65 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQIPA 65 (92)
T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECCCCC
T ss_pred ChHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceEEEEEecccc
Confidence 58999998754 45999999999999999999998 7999999999999999998887776 5666
No 5
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.76 E-value=1e-08 Score=83.52 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=50.5
Q ss_pred cchHHHHHHHhC-CCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCe
Q 026574 159 ASLRVDALASAG-FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 214 (236)
Q Consensus 159 ~s~RLD~ils~~-~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr 214 (236)
-++|||.+|++. +..||+.|+++|.+|.|.|||+.+++|++.|++||.|+|++..+
T Consensus 49 le~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~~ 105 (159)
T 1c05_A 49 LESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSR 105 (159)
T ss_dssp HHHBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECGGGS
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeCcee
Confidence 478999999865 57899999999999999999999988999999999999987653
No 6
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.73 E-value=3.1e-09 Score=89.71 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=52.3
Q ss_pred cchHHHHHHHhC-CCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEE
Q 026574 159 ASLRVDALASAG-FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216 (236)
Q Consensus 159 ~s~RLD~ils~~-~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~ 216 (236)
-++|||.+|++. +..||+.|+++|.+|.|.|||+.++.|++.|++||.|+|++.++..
T Consensus 87 Le~RLD~~L~r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~~~r~~ 145 (201)
T 3bbn_D 87 LEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQKSI 145 (201)
T ss_dssp HHSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSSTTSC
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEccccchH
Confidence 478999999654 5679999999999999999999998999999999999999988753
No 7
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=98.72 E-value=1.5e-09 Score=91.86 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=52.9
Q ss_pred ccchHHHHHHHh-CCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeE
Q 026574 158 EASLRVDALASA-GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215 (236)
Q Consensus 158 v~s~RLD~ils~-~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~ 215 (236)
...+|||.+|+. .+..||+.|+++|.+|.|.|||+.++.|++.|++||+|+|++.++-
T Consensus 92 lle~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~~~~ 150 (205)
T 3r8n_D 92 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK 150 (205)
T ss_dssp HHHTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCSSSCS
T ss_pred hhHhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecCchhh
Confidence 357999999986 4688999999999999999999999889999999999999998864
No 8
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.70 E-value=1.2e-09 Score=78.73 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=47.7
Q ss_pred ccchHHHHHHHhC-CCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeC
Q 026574 158 EASLRVDALASAG-FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212 (236)
Q Consensus 158 v~s~RLD~ils~~-~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~ 212 (236)
...+|||.+|+.. +..||+.|+++|++|.|+|||+.+.++++.|.+||.|.+.|.
T Consensus 18 ~~~~RLdk~L~~~g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~~ 73 (79)
T 1p9k_A 18 HPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 73 (79)
T ss_dssp CSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTE
T ss_pred CCCchHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEECCE
Confidence 3458999999864 235999999999999999999998889999999999888654
No 9
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=3.2e-08 Score=70.18 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=45.1
Q ss_pred chHHHHHHHh-CCCcCHHHHHHHHHCCcEEECCEEecCCCcccCC--CCEEEEe
Q 026574 160 SLRVDALASA-GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRT--GDIVSVS 210 (236)
Q Consensus 160 s~RLD~ils~-~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~--GD~Isvr 210 (236)
..|||.+|.+ .+.-||++|+++|.+|+|+|||+.+++|++.|.+ +|.|++.
T Consensus 7 ~~RLD~~l~~~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~ 60 (71)
T 2cqj_A 7 GRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWV 60 (71)
T ss_dssp EEEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEES
T ss_pred HHHHHHHHHHhCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEE
Confidence 4699999865 4567999999999999999999999999999998 7888864
No 10
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=98.52 E-value=5.5e-08 Score=83.28 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=48.9
Q ss_pred cchHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee
Q 026574 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211 (236)
Q Consensus 159 ~s~RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg 211 (236)
+++|||.+|+....+||+.++++|++|+|+|||+.++++++.|++||.|++.+
T Consensus 2 ~~~RLd~~L~~~~~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 54 (234)
T 1ksk_A 2 SHMRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDG 54 (234)
T ss_dssp CCEEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETT
T ss_pred CcccHHHHHHHcCCCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEeC
Confidence 47899999987778999999999999999999999977999999999999974
No 11
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.45 E-value=9.8e-08 Score=84.79 Aligned_cols=54 Identities=24% Similarity=0.259 Sum_probs=48.7
Q ss_pred cchHHHHHHHh-CCCcCHHHHHHHHHCCcEEECC-E-EecCCCcccCCCCEEEEeeC
Q 026574 159 ASLRVDALASA-GFKLSRSKLVNLISNGDVRVNW-T-TVTKNGTTLRTGDIVSVSGK 212 (236)
Q Consensus 159 ~s~RLD~ils~-~~~~SR~~a~~lI~~G~V~VNg-~-~~~~~~~~v~~GD~Isvrg~ 212 (236)
..+|||.+|++ .+..||++|+++|++|+|+||| + .+.+|++.|.+||.|+|+|.
T Consensus 5 ~~~RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g~ 61 (291)
T 3hp7_A 5 PKERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKGE 61 (291)
T ss_dssp CEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETTC
T ss_pred chhhHHHHHHHcCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEccc
Confidence 46899999975 4678999999999999999999 8 78899999999999999875
No 12
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=98.44 E-value=1.6e-07 Score=83.37 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=49.4
Q ss_pred ccchHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee
Q 026574 158 EASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211 (236)
Q Consensus 158 v~s~RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg 211 (236)
.+++|||.||+....+||+.++++|.+|+|+|||+.+ ++++.|.+||.|+|.+
T Consensus 4 ~~g~RLdk~La~~g~~SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~ 56 (290)
T 3dh3_A 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNG 56 (290)
T ss_dssp CCCEEHHHHHHTTTSSCHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETT
T ss_pred ccchHHHHHHHhCCCCCHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEecc
Confidence 3689999999987778999999999999999999999 7999999999999976
No 13
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.42 E-value=5.9e-08 Score=80.50 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=49.7
Q ss_pred chHHHHHH-HhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCC--CEEEEeeCCe
Q 026574 160 SLRVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG--DIVSVSGKGR 214 (236)
Q Consensus 160 s~RLD~il-s~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~G--D~Isvrg~Gr 214 (236)
.+|||.+| ...+.-||+.|+++|.+|+|.|||+.+++|++.|.+| |.|++.+.-.
T Consensus 102 e~RLD~~L~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~s~ 159 (180)
T 3j20_D 102 ERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSP 159 (180)
T ss_dssp HTSHHHHHHHHTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSCSS
T ss_pred hhhhhheeecCcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCCCc
Confidence 68999998 4667889999999999999999999999999999999 9999976544
No 14
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=98.41 E-value=1.4e-07 Score=81.27 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=47.8
Q ss_pred chHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee
Q 026574 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211 (236)
Q Consensus 160 s~RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg 211 (236)
++|||.+|+....+||+.++++|++|+|+|||+.++++++.|++||.|.+.+
T Consensus 2 ~~RLd~~L~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 53 (243)
T 1vio_A 2 SLRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED 53 (243)
T ss_dssp CEEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT
T ss_pred CccHHHHHHHcCCCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEec
Confidence 5899999987778999999999999999999999977999999999998864
No 15
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=98.40 E-value=1.4e-07 Score=78.48 Aligned_cols=52 Identities=15% Similarity=0.085 Sum_probs=46.1
Q ss_pred ccchHHHHHHH-hCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCC--EEEE
Q 026574 158 EASLRVDALAS-AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD--IVSV 209 (236)
Q Consensus 158 v~s~RLD~ils-~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD--~Isv 209 (236)
.-++|||.+|. ..+..||+.|+++|.+|.|.|||+.+++|++.|.+|| .|++
T Consensus 104 ~le~RLD~vL~~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v 158 (181)
T 2xzm_D 104 LMERRLQTRVFKLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDF 158 (181)
T ss_dssp HHTTBHHHHHHHTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEEC
T ss_pred hhccchhHHHHhccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEE
Confidence 34789999985 5667899999999999999999999999999999997 5665
No 16
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=98.23 E-value=1.4e-07 Score=84.69 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=0.0
Q ss_pred ccchHHHHHHHhCC-CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeC
Q 026574 158 EASLRVDALASAGF-KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGK 212 (236)
Q Consensus 158 v~s~RLD~ils~~~-~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~ 212 (236)
.+++|||.+|+..+ .+||+.++++|++|+|+|||+.+.++++.|++||.|++.+.
T Consensus 14 ~~g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~ 69 (325)
T 1v9f_A 14 QLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 69 (325)
T ss_dssp --------------------------------------------------------
T ss_pred cCCchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEecc
Confidence 46899999999877 89999999999999999999985689999999999999764
No 17
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.97 E-value=1.4e-06 Score=73.15 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=45.8
Q ss_pred chHHHHHHHh-CCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCC--CEEEEee
Q 026574 160 SLRVDALASA-GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTG--DIVSVSG 211 (236)
Q Consensus 160 s~RLD~ils~-~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~G--D~Isvrg 211 (236)
.+|||.+|.+ .+.-||++|+++|.+|+|.|||+.++.|++.|.+| |.|++..
T Consensus 106 e~RLD~~L~r~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~ 160 (197)
T 3u5c_J 106 ERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAP 160 (197)
T ss_dssp TTSHHHHHHHSSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCS
T ss_pred HHHHHHHHHHccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcC
Confidence 5799999864 56779999999999999999999999999999999 5677653
No 18
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.33 E-value=7.6e-07 Score=74.59 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=48.4
Q ss_pred cchHHHHHHHh-CCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCe
Q 026574 159 ASLRVDALASA-GFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGR 214 (236)
Q Consensus 159 ~s~RLD~ils~-~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr 214 (236)
-.+|||.+|.. .+.-||++|+++|.+|+|.|||+.++.|++.|.+||.+.|...+.
T Consensus 107 le~RLD~~L~r~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~~~~~ 163 (195)
T 3iz6_C 107 LARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLT 163 (195)
T ss_dssp TTSCCCSSCCCCCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSCSSSC
T ss_pred HHhhhhHHHHhccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEEecCC
Confidence 35799999864 456699999999999999999999999999999999988875444
No 19
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=97.00 E-value=0.0014 Score=55.49 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=43.5
Q ss_pred chHHHHHHHhC--CCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEE
Q 026574 160 SLRVDALASAG--FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 209 (236)
Q Consensus 160 s~RLD~ils~~--~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isv 209 (236)
|+-|--+|... +..+++.|++++.+|.|+|||+..+++++.+..+|+|++
T Consensus 7 slPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 7 SVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp CEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE
T ss_pred ceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe
Confidence 45566666643 467889999999999999999999999999999999999
No 20
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.90 E-value=0.0027 Score=54.73 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=47.5
Q ss_pred cchHHHHHHHhCC--CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee
Q 026574 159 ASLRVDALASAGF--KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211 (236)
Q Consensus 159 ~s~RLD~ils~~~--~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg 211 (236)
.|+-|--+|...+ ..+++.|++++.+|.|+|||+..+++++.+..+|+|++.-
T Consensus 41 ~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~k 95 (243)
T 3j20_E 41 TSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPE 95 (243)
T ss_dssp TCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETT
T ss_pred cceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecc
Confidence 4677888888765 5788999999999999999999999999999999999975
No 21
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.28 E-value=0.018 Score=53.49 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCE
Q 026574 162 RVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDI 206 (236)
Q Consensus 162 RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~ 206 (236)
-+|.++...+--|++.|+++|++|.|+|||..+++++..+.++|.
T Consensus 358 ~~~ll~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~ 402 (432)
T 2jan_A 358 IVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDF 402 (432)
T ss_dssp HHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGS
T ss_pred HHHHHHHhCCcccHHHHHHHHHhCCEEECCEEccChhcccChhhc
Confidence 466667777889999999999999999999999999999987653
No 22
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=95.19 E-value=0.019 Score=40.00 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=44.3
Q ss_pred ccCCCccchHHHHHc-CCCCccccccEEEecCCeEEEEechhhHHHHHhccce--ecceEEEE
Q 026574 77 FQPCSHGDFLGSILG-TGIAREKIGDIILQGEKGAQFLVVPELADYLITSLEK--VGNVSVSC 136 (236)
Q Consensus 77 f~~l~Hrd~LGalm~-lGi~Re~iGDI~~~~~~~~~~~v~~~i~~~i~~~l~k--I~~~~V~~ 136 (236)
=+.+..+|++|+|.+ .||.++.||+|-+.+ +..+|-+.+++++-+...|.. +..-++++
T Consensus 10 k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-~~s~v~v~~~~~~~~~~~l~~~~i~g~~~~v 71 (76)
T 2g0c_A 10 KKKIRAVDFVGTIAKIDGVSADDIGIITIMD-NASYVEILNGKGPHVLKVMKNTTVKGKQLKV 71 (76)
T ss_dssp C----CHHHHHHHHTSTTCCGGGEEEEEECS-SCEEEEECTTCHHHHHHHHTTCCC---CCCE
T ss_pred ccCCCHHHHHHHHHHccCCChhhccEEEEeC-CcEEEEECHHHHHHHHHHhccccCcCceEEE
Confidence 356788999999999 899999999998855 589999999999999988875 34444443
No 23
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.28 E-value=0.14 Score=47.57 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=42.0
Q ss_pred HHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEE-eeCCeEE
Q 026574 162 RVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV-SGKGRIK 216 (236)
Q Consensus 162 RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isv-rg~Gr~~ 216 (236)
-+|.+....+.-|++.|+++|++|.|+|||..+++++..+.+++.+.+ +|+-+|-
T Consensus 371 ~~~~l~~~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~~~~~l~~GKk~~~ 426 (432)
T 1h3f_A 371 VARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRILQRGKDRFV 426 (432)
T ss_dssp HHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSSCEEEEETTTEEE
T ss_pred HHHHHHHhCCcccHHHHHHHHHhCCEEECCEEecCccceecCCCcEEEEeCCeeEE
Confidence 345555667889999999999999999999999999999987652222 3444443
No 24
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=93.90 E-value=0.01 Score=54.94 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred hHHHHHH-HhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEEee
Q 026574 161 LRVDALA-SAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEIN 221 (236)
Q Consensus 161 ~RLD~il-s~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~~~ 221 (236)
..|..+| ...+--|++.|+++|++|.|+|||..+++++..+.+||.+ .|++.+...|
T Consensus 353 i~l~~lL~~agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~----~~~~~~l~~G 410 (420)
T 1jil_A 353 TNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI----DGEFTIIRRG 410 (420)
T ss_dssp --------------------------------------------------------------
T ss_pred ccHHHHHHHcCCccCHHHHHHHHHhCCEEECCEEecccccccCccccc----CCcEEEEEEC
Confidence 3555555 4556779999999999999999999999999999999876 4454443333
No 25
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=92.92 E-value=0.018 Score=53.25 Aligned_cols=45 Identities=29% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEE
Q 026574 163 VDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIV 207 (236)
Q Consensus 163 LD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~I 207 (236)
+|.++...+--|++.|+++|++|.|+|||..+++++..+.++|.+
T Consensus 355 ~~~l~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~~ 399 (419)
T 2ts1_A 355 VELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRL 399 (419)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHhCCCCCHHHHHHHHHhCCEEECCEEecCcccccChhhcc
Confidence 444555667789999999999999999999999999999888765
No 26
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=90.92 E-value=0.15 Score=41.38 Aligned_cols=34 Identities=26% Similarity=0.171 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEec
Q 026574 162 RVDALASAGFKLSRSKLVNLISNGDVRVNWTTVT 195 (236)
Q Consensus 162 RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~ 195 (236)
-+|.+++..+--|++.|+++|.+|.|+||+..+.
T Consensus 52 ivdlLv~aGLa~SKsEARRlI~qGGv~VNg~kv~ 85 (164)
T 2ktl_A 52 FSKVLWSAGLVASKSEGQRIINNNGAYVGSRPGV 85 (164)
T ss_dssp HHHHHHHHTSCSTHHHHHHHHHHTCEEEEECCSC
T ss_pred HHHHHHHhCcccCHHHHHHHHHhCCEEECCEecc
Confidence 5677778888999999999999999999997763
No 27
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=89.28 E-value=1.4 Score=38.14 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=50.8
Q ss_pred cchHHHHHHHhCC--CcCHHHHHHHHHC--CcEEECCEEecCCCcccCCCCEEEEee-----------CCeEEEEEe
Q 026574 159 ASLRVDALASAGF--KLSRSKLVNLISN--GDVRVNWTTVTKNGTTLRTGDIVSVSG-----------KGRIKIGEI 220 (236)
Q Consensus 159 ~s~RLD~ils~~~--~~SR~~a~~lI~~--G~V~VNg~~~~~~~~~v~~GD~Isvrg-----------~Gr~~~~~~ 220 (236)
.|+-|--+|...+ -.+.+.|+..+.+ |.|+|||++.++..+.+--=|+|||.. +|||.+..+
T Consensus 40 eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I 116 (260)
T 2xzm_W 40 ESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSL 116 (260)
T ss_dssp SCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEGGGTEEEEEEECSSSCEEEEEC
T ss_pred eeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEcCCCCEEEEEEcCCccEEEEEc
Confidence 3566778887766 4788999999999 999999999988889998889999963 566666555
No 28
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=88.98 E-value=0.39 Score=41.62 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=51.3
Q ss_pred cchHHHHHHHhCC--CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee-----------CCeEEEEEe
Q 026574 159 ASLRVDALASAGF--KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG-----------KGRIKIGEI 220 (236)
Q Consensus 159 ~s~RLD~ils~~~--~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg-----------~Gr~~~~~~ 220 (236)
.|+-|--+|...+ -.+.+.|+..+.+|.|+|||++.++..+.+--=|+|||.. +|||.+..+
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I 114 (261)
T 3u5c_E 40 ESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRI 114 (261)
T ss_dssp GEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEETTTTEEEECCBCSSSCBCCEEC
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEcCCCCEEEEEECCCCcEEEEEC
Confidence 4667888888766 4667899999999999999999999999998889999943 677776665
No 29
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.54 E-value=0.31 Score=42.32 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=48.1
Q ss_pred cchHHHHHHHhCC--CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEee-----------CCeEEEEEe
Q 026574 159 ASLRVDALASAGF--KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSG-----------KGRIKIGEI 220 (236)
Q Consensus 159 ~s~RLD~ils~~~--~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg-----------~Gr~~~~~~ 220 (236)
.|+-|--+|...+ -.+.+.|+..+.+|.|+|||++.++..+.+--=|+|||.. +|||.+..+
T Consensus 40 eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I 114 (265)
T 3iz6_D 40 ECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSV 114 (265)
T ss_dssp ---CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCSSCCEEEEEECTTSCEEEEEE
T ss_pred hheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcCCCCEEEEEECCCCcEEEEEC
Confidence 3566767776544 5667899999999999999999988888888889999954 677777666
No 30
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=79.99 E-value=2.6 Score=28.85 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=24.7
Q ss_pred HHHHHHHCC--cEEECCEEecCCCcccCCCCEEEE
Q 026574 177 KLVNLISNG--DVRVNWTTVTKNGTTLRTGDIVSV 209 (236)
Q Consensus 177 ~a~~lI~~G--~V~VNg~~~~~~~~~v~~GD~Isv 209 (236)
..+.++..+ .|.||++.+ ..+..|++||.|.+
T Consensus 41 ~~~~~l~~~~~~v~vN~~~v-~~~~~l~~gD~V~i 74 (81)
T 1fm0_D 41 RWALALEDGKLLAAVNQTLV-SFDHPLTDGDEVAF 74 (81)
T ss_dssp HHHHHHCCTTCEEEETTEEC-CTTCBCCTTCEEEE
T ss_pred hHHHHhcCCCEEEEECCEEC-CCCCCCCCCCEEEE
Confidence 344445444 488999998 48999999999987
No 31
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=78.79 E-value=1.9 Score=29.34 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.1
Q ss_pred cEEECCEEecCCCcccCCCCEEEEe
Q 026574 186 DVRVNWTTVTKNGTTLRTGDIVSVS 210 (236)
Q Consensus 186 ~V~VNg~~~~~~~~~v~~GD~Isvr 210 (236)
.|.|||+.+. .+..|++||.|.+-
T Consensus 48 ~v~vNg~~v~-~~~~L~~gD~V~i~ 71 (77)
T 2q5w_D 48 QVAVNEEFVQ-KSDFIQPNDTVALI 71 (77)
T ss_dssp EEEETTEEEC-TTSEECTTCEEEEE
T ss_pred EEEECCEECC-CCCCcCCCCEEEEE
Confidence 6999999994 78999999999873
No 32
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=77.37 E-value=1.6 Score=29.83 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=23.9
Q ss_pred HHCCcEEECCEEecCCCcccCCCCEEEE
Q 026574 182 ISNGDVRVNWTTVTKNGTTLRTGDIVSV 209 (236)
Q Consensus 182 I~~G~V~VNg~~~~~~~~~v~~GD~Isv 209 (236)
+..-.|.||++.+...++.|++||.|.+
T Consensus 40 l~~~~vavN~~~v~~~~~~l~~gDeV~i 67 (74)
T 3rpf_C 40 LGVCAIALNDHLIDNLNTPLKDGDVISL 67 (74)
T ss_dssp TTTCEEEESSSEECCTTCCCCTTCEEEE
T ss_pred hhccEEEECCEEcCCCCcCCCCCCEEEE
Confidence 4567899999996578999999999987
No 33
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=76.46 E-value=2.3 Score=29.83 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.3
Q ss_pred CcEEECCEEecCCCcccCCCCEEEE
Q 026574 185 GDVRVNWTTVTKNGTTLRTGDIVSV 209 (236)
Q Consensus 185 G~V~VNg~~~~~~~~~v~~GD~Isv 209 (236)
-.|.||++.+. .++.|++||.|.+
T Consensus 59 ~~v~VN~~~v~-~~~~l~~gDeV~i 82 (89)
T 3po0_A 59 INVLRNGEAAA-LGEATAAGDELAL 82 (89)
T ss_dssp SEEEETTEECC-TTSBCCTTCEEEE
T ss_pred EEEEECCEECC-CCcccCCCCEEEE
Confidence 36899999994 7999999999987
No 34
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=74.00 E-value=3.2 Score=28.10 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=29.6
Q ss_pred chHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEe
Q 026574 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 210 (236)
Q Consensus 160 s~RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvr 210 (236)
+..+..++... ++.. ..=.|.+|+..+ .++..|++||.|.+-
T Consensus 23 ~~tv~~Ll~~l-~~~~-------~~v~vavN~~~v-~~~~~L~~gD~V~ii 64 (70)
T 1ryj_A 23 PRRIKDVLGEL-EIPI-------ETVVVKKNGQIV-IDEEEIFDGDIIEVI 64 (70)
T ss_dssp CCBHHHHHHHT-TCCT-------TTEEEEETTEEC-CTTSBCCTTCEEEEE
T ss_pred CCcHHHHHHHh-CCCC-------CCEEEEECCEEC-CCcccCCCCCEEEEE
Confidence 45677777653 4431 112488999998 478899999999874
No 35
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=69.91 E-value=1.6 Score=30.17 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=29.1
Q ss_pred chHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEE
Q 026574 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSV 209 (236)
Q Consensus 160 s~RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isv 209 (236)
+..+..++.. +++. ...=.|.||++.+ ..+..|++||.|.|
T Consensus 30 ~~Tv~dLl~~-L~~~-------~~~v~VavNg~~v-~~~~~L~dGD~V~i 70 (77)
T 1rws_A 30 GMKVRDILRA-VGFN-------TESAIAKVNGKVV-LEDDEVKDGDFVEV 70 (77)
T ss_dssp SCCHHHHHHT-TTCS-------SCSSCEEETTEEE-CSSSCCCSSCCCBC
T ss_pred CCcHHHHHHH-hCCC-------CcCEEEEECCEEC-CCCCCcCCCCEEEE
Confidence 4567777765 3443 1222599999999 47899999999876
No 36
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=68.39 E-value=3.4 Score=27.36 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=28.6
Q ss_pred cchHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecC---CCcccCCCCEEEEe
Q 026574 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTK---NGTTLRTGDIVSVS 210 (236)
Q Consensus 159 ~s~RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~---~~~~v~~GD~Isvr 210 (236)
.+..+..++.. +++.+ ..=.|.||++.+.. .+..|++||.|.+-
T Consensus 12 ~~~tv~~ll~~-l~~~~-------~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 12 EGKTLKEVLEE-MGVEL-------KGVAVLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp TTCCHHHHHHH-HTBCG-------GGEEEEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred CCCcHHHHHHH-cCCCC-------CcEEEEECCEECCccccCCcCCCCCCEEEEE
Confidence 34556666654 24432 11248899999853 23899999999874
No 37
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=67.37 E-value=3.2 Score=29.89 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.7
Q ss_pred cEEECCEEecCCCcccCCCCEEEE
Q 026574 186 DVRVNWTTVTKNGTTLRTGDIVSV 209 (236)
Q Consensus 186 ~V~VNg~~~~~~~~~v~~GD~Isv 209 (236)
.|.||++.+. .++.|++||.|.+
T Consensus 69 ~v~VNg~~v~-~~~~L~dGDeV~i 91 (98)
T 1vjk_A 69 NIAVNGRYVS-WDEELKDGDVVGV 91 (98)
T ss_dssp EEEETTBCCC-TTCBCCTTCEEEE
T ss_pred EEEECCEECC-CCCCCCCCCEEEE
Confidence 5899999984 7999999999987
No 38
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=66.95 E-value=1.9 Score=31.68 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=32.5
Q ss_pred cchHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEe
Q 026574 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 210 (236)
Q Consensus 159 ~s~RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvr 210 (236)
.+..+..++.+ +++....-.--+....|-|||+.+ .+++.|++||.|.|-
T Consensus 34 ~g~TV~daI~~-~gi~~~~peIdl~~~~V~Vng~~v-~~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 34 EGITVQTAITQ-SGILSQFPEIDLSTNKIGIFSRPI-KLTDVLKEGDRIEIY 83 (97)
T ss_dssp TTCBHHHHHHH-HTHHHHCTTCCTTTSEEEEEECSC-CTTCBCCTTCEEEEC
T ss_pred CCCcHHHHHHH-cCCCccCCcccccccEEEEcCEEC-CCCccCCCCCEEEEE
Confidence 45667666654 343321100011246799999998 599999999999884
No 39
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=66.46 E-value=3.8 Score=28.98 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.5
Q ss_pred cEEECCEEecC---CCcccCCCCEEEE
Q 026574 186 DVRVNWTTVTK---NGTTLRTGDIVSV 209 (236)
Q Consensus 186 ~V~VNg~~~~~---~~~~v~~GD~Isv 209 (236)
.|.||++.+.. .++.|++||.|.+
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTI 86 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEE
Confidence 58899999853 5789999999987
No 40
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=64.66 E-value=2.8 Score=28.90 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=30.7
Q ss_pred cchHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCC---CcccCCCCEEEEe
Q 026574 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKN---GTTLRTGDIVSVS 210 (236)
Q Consensus 159 ~s~RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~---~~~v~~GD~Isvr 210 (236)
.+..|..+|.. +++.. +.=.|.+||..+.+. ++.|++||.|.|-
T Consensus 13 ~~~Tl~~LL~~-l~~~~-------~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 13 QSASVAALMTE-LDCTG-------GHFAVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp CCSBHHHHHHH-TTCCS-------SSCEEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred CCCcHHHHHHH-cCCCC-------CcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 45678888875 45441 112488999998543 5799999999884
No 41
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=64.22 E-value=3.2 Score=29.00 Aligned_cols=44 Identities=32% Similarity=0.413 Sum_probs=29.4
Q ss_pred chHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCC---CcccCCCCEEEEe
Q 026574 160 SLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKN---GTTLRTGDIVSVS 210 (236)
Q Consensus 160 s~RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~---~~~v~~GD~Isvr 210 (236)
+..|..+|.. +++.. -+.=.|.+||..+.+. ++.|++||.|.|-
T Consensus 17 ~~Tl~~LL~~-l~~~~------~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 17 SLNVTELLSA-LKVAQ------AEYVTVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp CEEHHHHHHH-HTCSC------TTTCCEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred CCcHHHHHHH-cCCCC------CCcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 4567777765 34431 1122488999998543 3789999999883
No 42
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=63.46 E-value=5.8 Score=28.37 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=28.4
Q ss_pred hHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCC---CcccCCCCEEEEe
Q 026574 161 LRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKN---GTTLRTGDIVSVS 210 (236)
Q Consensus 161 ~RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~---~~~v~~GD~Isvr 210 (236)
..+..++.. +++.. ..=.|.||++.+.+. +..|++||.|.|-
T Consensus 37 ~Tv~dLL~~-L~~~~-------~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 37 GTIQDLLAS-YQLEN-------KIVIVERNKEIIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp CBHHHHHHH-TTCTT-------SCCEEEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred CcHHHHHHH-hCCCC-------CCEEEEECCEECChhhcCCcCCCCCCEEEEE
Confidence 566777765 34331 122488999998532 5789999999874
No 43
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=63.14 E-value=6.1 Score=27.60 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=32.3
Q ss_pred eEEeeeccchHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEe
Q 026574 152 KSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 210 (236)
Q Consensus 152 ~~~~~~v~s~RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvr 210 (236)
..+.....+.-+|.. +.++....+..+ ..+|||+.+ ..++.|+.||.|.|-
T Consensus 16 ~~~~lp~GaT~~D~A----~~Ih~~lg~~~v---~AkVNG~~v-~L~~~L~~gd~VeIi 66 (78)
T 3hvz_A 16 DVISLPIGSTVIDFA----YAIHSAVGNRMI---GAKVDGRIV-PIDYKVKTGEIIDVL 66 (78)
T ss_dssp CEEEEETTCBHHHHH----HHHCHHHHHTEE---EEEETTEEE-CTTCBCCTTCBEEEE
T ss_pred CEEEecCCCCHHHHH----HHhhhhhhcceE---EEEECCEEc-CCCcccCCCCEEEEE
Confidence 334444445556632 223454444332 257899998 589999999999874
No 44
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=61.52 E-value=3.8 Score=27.24 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=20.0
Q ss_pred cEEECCEEecCC---CcccCCCCEEEEe
Q 026574 186 DVRVNWTTVTKN---GTTLRTGDIVSVS 210 (236)
Q Consensus 186 ~V~VNg~~~~~~---~~~v~~GD~Isvr 210 (236)
.|.||++.+.+. ++.|++||.|.+-
T Consensus 33 ~vavN~~~v~~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 33 ALAINQQIVPREQWAQHIVQDGDQILLF 60 (66)
T ss_dssp EEEETTEEECHHHHTTCCCCTTEEECEE
T ss_pred EEEECCEECCchhcCCcCCCCCCEEEEE
Confidence 488999998531 6899999999873
No 45
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=60.36 E-value=3.6 Score=30.32 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=34.0
Q ss_pred hCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEEe
Q 026574 169 AGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 220 (236)
Q Consensus 169 ~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~~ 220 (236)
...++|+..+...+.. ....-...|..|+.|.++|+|.|.+..-
T Consensus 25 ~~~~lsk~~~~~vl~~--------~~~~i~~~L~~G~~V~l~gfGtF~v~~r 68 (108)
T 2np2_A 25 NNLKLEKKYIRLVIDA--------FFEELKSNLCSNNVIEFRSFGTFEVRKR 68 (108)
T ss_dssp TTCCCCHHHHHHHHHH--------HHHHHHHHHHTTCEEEETTTEEEEEEEE
T ss_pred hhcCCCHHHHHHHHHH--------HHHHHHHHHHCCCeEEecCcEEEEEEEe
Confidence 6679999999988764 2222345788899999999999998753
No 46
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=59.93 E-value=1.8 Score=30.85 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=33.8
Q ss_pred HHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEE
Q 026574 166 LASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219 (236)
Q Consensus 166 ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~ 219 (236)
.++...++|+..+...+.. ....-...|..|+.|.+.|+|.|.+..
T Consensus 9 ~ia~~~~ls~~~~~~~l~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 54 (90)
T 2o97_B 9 KIAAGADISKAAAGRALDA--------IIASVTESLKEGDDVALVGFGTFAVKE 54 (90)
T ss_dssp HHHHTTC-CHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEC
T ss_pred HHHHHhCCCHHHHHHHHHH--------HHHHHHHHHHCCCeEEECCCEEEEEEE
Confidence 3556678999999888764 222234568889999999999999864
No 47
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=59.80 E-value=9.3 Score=29.89 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=25.1
Q ss_pred CcEEECCEEecCCCcccCCCCEEEEeeCCeEEEE
Q 026574 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218 (236)
Q Consensus 185 G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~ 218 (236)
..++|||+.+. ....|+.||.|.+=..-.|+|.
T Consensus 110 ngt~VNG~~i~-~~~~L~~GD~I~~G~~~~Frf~ 142 (154)
T 4ejq_A 110 ADTYVNGKKVT-EPSILRSGNRIIMGKSHVFRFN 142 (154)
T ss_dssp CCEEETTEECC-SCEECCTTCEEEETTTEEEEEE
T ss_pred CceEECCEEcC-CceECCCCCEEEECCcEEEEEc
Confidence 46899999995 5678999999998433356664
No 48
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=59.06 E-value=4.6 Score=28.12 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.6
Q ss_pred cEEECCEEecC---CCcccCCCCEEEE
Q 026574 186 DVRVNWTTVTK---NGTTLRTGDIVSV 209 (236)
Q Consensus 186 ~V~VNg~~~~~---~~~~v~~GD~Isv 209 (236)
.|.||++.+.. .++.|++||.|.+
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDL 83 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEE
Confidence 58999998852 6889999999987
No 49
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=58.73 E-value=10 Score=28.73 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=24.0
Q ss_pred CcEEECCEEecCCCcccCCCCEEEEeeCCeEEE
Q 026574 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217 (236)
Q Consensus 185 G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~ 217 (236)
..++|||+.+. ....|+.||.|.+=..--|++
T Consensus 90 ngt~VNG~~V~-~~~~L~~GD~I~lG~~~~FrF 121 (124)
T 3fm8_A 90 TRTFVNGSSVS-SPIQLHHGDRILWGNNHFFRL 121 (124)
T ss_dssp CCEEETTEECC-SCEEECTTCEEEETTTEEEEE
T ss_pred CCEEECCEEcC-CcEECCCCCEEEECCCeEEEE
Confidence 36999999995 567899999998744333444
No 50
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=57.81 E-value=1.5 Score=31.55 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=33.5
Q ss_pred HHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEE
Q 026574 167 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219 (236)
Q Consensus 167 ls~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~ 219 (236)
++...++|+..+...+.. ....-...|..|+.|.++|+|.|.+..
T Consensus 13 ia~~~~lsk~~~~~~v~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 57 (93)
T 3rhi_A 13 VAQNAEISQKEATVVVQT--------VVESITNTLAAGEKVQLIGFGTFEVRE 57 (93)
T ss_dssp HHHHHTCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHHhCcCHHHHHHHHHH--------HHHHHHHHHhCCCEEEEcCCEEEEEEE
Confidence 445568999999888764 122234468889999999999999864
No 51
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=56.86 E-value=11 Score=30.58 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=25.6
Q ss_pred CcEEECCEEecCCCcccCCCCEEEEeeCCeEEEE
Q 026574 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218 (236)
Q Consensus 185 G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~ 218 (236)
..++|||..++ ....|+.||.|.+=..--|+|.
T Consensus 140 a~t~VNG~~I~-~~~~L~~GDrI~lG~~h~Frfn 172 (184)
T 4egx_A 140 ADTYVNGKKVT-EPSILRSGNRIIMGKSHVFRFN 172 (184)
T ss_dssp CCEEETTEECC-SCEECCTTCEEEETTTEEEEEE
T ss_pred CeEEEcCEEcc-ccEEcCCCCEEEECCCCEEEEC
Confidence 35899999996 5578999999987544456664
No 52
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=56.08 E-value=2.1 Score=30.40 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=33.8
Q ss_pred HHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEE
Q 026574 167 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219 (236)
Q Consensus 167 ls~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~ 219 (236)
++...++|+..+...+.. ....-...|..|+.|.+.|+|.|.+..
T Consensus 10 ia~~~~ls~~~~~~~l~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 54 (90)
T 1mul_A 10 IAEKAELSKTQAKAALES--------TLAAITESLKEGDAVQLVGFGTFKVNH 54 (90)
T ss_dssp HHHHTTCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHHhCCCHHHHHHHHHH--------HHHHHHHHHhCCCeEEEcCCeEEEEEE
Confidence 455578999999888764 122234568889999999999999864
No 53
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=55.06 E-value=9.8 Score=31.98 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=25.5
Q ss_pred HCCcEEECCEEecCCCcccC-CCCEEEEeeCCeEEE
Q 026574 183 SNGDVRVNWTTVTKNGTTLR-TGDIVSVSGKGRIKI 217 (236)
Q Consensus 183 ~~G~V~VNg~~~~~~~~~v~-~GD~Isvrg~Gr~~~ 217 (236)
.+|.|.|||+.++ ....++ .||.|.+ |.=.|++
T Consensus 133 ~ngtvyvNg~~i~-~~~~L~~~GD~I~i-g~~~~~~ 166 (238)
T 1wv3_A 133 KNTDVYINYELQE-QLTNKAYIGDHIYV-EGIWLEV 166 (238)
T ss_dssp TTCCEEETTEECC-SSEEEEETTCEEEE-TTEEEEE
T ss_pred CCCCEEECCEEec-cceeccCCcCEEEE-CCEEEEE
Confidence 3788999999985 455899 9999999 3335555
No 54
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=53.34 E-value=10 Score=25.07 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=19.3
Q ss_pred EEECCEEecCCCcccCCCCEEEEe
Q 026574 187 VRVNWTTVTKNGTTLRTGDIVSVS 210 (236)
Q Consensus 187 V~VNg~~~~~~~~~v~~GD~Isvr 210 (236)
+.|||+.+ ..++.|+.||.|.+-
T Consensus 39 a~vNg~lv-dl~~~L~~~~~Veiv 61 (73)
T 2kmm_A 39 AKVNHKLV-PLSYVLNSGDQVEVL 61 (73)
T ss_dssp EEETTEEC-CTTCBCCSSSBEEEE
T ss_pred EEECCEEe-CCCcCcCCCCEEEEE
Confidence 57999998 589999999987763
No 55
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=52.46 E-value=9.4 Score=27.41 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.0
Q ss_pred cEEECCEEec---CCCcccCCCCEEEE
Q 026574 186 DVRVNWTTVT---KNGTTLRTGDIVSV 209 (236)
Q Consensus 186 ~V~VNg~~~~---~~~~~v~~GD~Isv 209 (236)
.|.||++.+. ..++.|+.||.|.+
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~ 92 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISF 92 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEE
Confidence 4889999764 46789999999987
No 56
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=51.87 E-value=2.1 Score=30.69 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEE
Q 026574 167 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219 (236)
Q Consensus 167 ls~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~ 219 (236)
++...++|+..+...+.. ....-...|..|+.|.+.|+|.|.+..
T Consensus 10 ia~~~~ls~~~~~~~l~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 54 (94)
T 1p71_A 10 VAEKASVTKKQADAVLTA--------ALETIIEAVSSGDKVTLVGFGSFESRE 54 (94)
T ss_dssp HHHHHTCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHHhCCCHHHHHHHHHH--------HHHHHHHHHhCCCeEEecCCEEEEEEE
Confidence 445568899998888764 222234568889999999999999864
No 57
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=50.42 E-value=2.3 Score=30.86 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=33.3
Q ss_pred HHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEE
Q 026574 167 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219 (236)
Q Consensus 167 ls~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~ 219 (236)
++...++|+..+...+.. ....-...|..|+.|.++|+|.|.+..
T Consensus 10 ia~~~~lsk~~~~~~l~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 54 (99)
T 3c4i_A 10 LTQKLGSDRRQATAAVEN--------VVDTIVRAVHKGDSVTITGFGVFEQRR 54 (99)
T ss_dssp HHHHHTCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHHhCCCHHHHHHHHHH--------HHHHHHHHHhCCCEEEECCCEEEEEEE
Confidence 445568899988888764 122234468889999999999999864
No 58
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=50.17 E-value=13 Score=31.26 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=40.8
Q ss_pred ChhhhhcCCceEEecCCChHHHHHHHHHhcccCCeeEEEeCCCccceeeEEEe
Q 026574 1 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV 53 (236)
Q Consensus 1 ~~~~~~~~~~~~~T~FL~p~~~~~~~~~~~~~~~~~~~~~GGy~~AER~~~~~ 53 (236)
+|++|.+++.++.-+=|+|.|..+++..+++.+++.....|- +.-|+.++.
T Consensus 157 ~A~kV~~tg~~v~L~PM~~~ERriIH~al~~~~~V~T~SeGe--ep~R~VVI~ 207 (225)
T 3gku_A 157 IAYKVKRTKRSVSLEPMNPYERRIIHAALQNDKYVVTRSDGE--EPFRHVIIS 207 (225)
T ss_dssp HHHHHHHHCSCEECCCCCHHHHHHHHHHTTTCSSEEEEEESS--TTSCEEEEE
T ss_pred HHHHHHHhCCEEEccCCCHHHHHHHHHHHccCCCcEEEEeec--CCCeEEEEE
Confidence 378899999999999999999999999999888998877663 344544433
No 59
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=49.38 E-value=6.9 Score=28.21 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.7
Q ss_pred cEEECCEEec---CCCcccCCCCEEEE
Q 026574 186 DVRVNWTTVT---KNGTTLRTGDIVSV 209 (236)
Q Consensus 186 ~V~VNg~~~~---~~~~~v~~GD~Isv 209 (236)
.|.||++.+. ..++.|++||.|.+
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i 92 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGI 92 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEE
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEE
Confidence 6899999884 46889999999987
No 60
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=47.49 E-value=4.7 Score=29.89 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=18.8
Q ss_pred HCCcEEECCEEecCCCcccCCCCE
Q 026574 183 SNGDVRVNWTTVTKNGTTLRTGDI 206 (236)
Q Consensus 183 ~~G~V~VNg~~~~~~~~~v~~GD~ 206 (236)
.+|.|+|||+.+ ....+..||.
T Consensus 60 ~nGtVFVNGqrv--~~~~I~~gDt 81 (102)
T 3uv0_A 60 LVGKIFVNDQEE--TVVDIGMENA 81 (102)
T ss_dssp SSSCEEETTEEE--SEEEECGGGC
T ss_pred ccCcEEECCEEe--eeEEccCCcc
Confidence 468999999998 5678888997
No 61
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=46.57 E-value=2.9 Score=30.30 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=33.3
Q ss_pred HHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEE
Q 026574 167 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219 (236)
Q Consensus 167 ls~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~ 219 (236)
++...++|+..+...+.. ....-...|..|+.|.+.|+|.|.+..
T Consensus 12 ia~~~~ls~~~~~~vl~~--------~~~~i~~~L~~G~~V~l~gfG~F~v~~ 56 (99)
T 1owf_A 12 LFDKLGLSKRDAKELVEL--------FFEEIRRALENGEQVKLSGFGNFDLRD 56 (99)
T ss_dssp HHHHHCCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHHhCCCHHHHHHHHHH--------HHHHHHHHHhCCCeEEecCCEEEEEEE
Confidence 445568899998888764 122234568889999999999999864
No 62
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=46.25 E-value=6.9 Score=26.95 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=30.9
Q ss_pred cchHHHHHHHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEe
Q 026574 159 ASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 210 (236)
Q Consensus 159 ~s~RLD~ils~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvr 210 (236)
.+.++..++.+ ++++...+ -|.+||+.+ .++..+. ||.|.|.
T Consensus 19 ~g~Tv~dLL~~-Lgl~~~~V-------vV~vNG~~v-~~d~~l~-GD~VeIv 60 (74)
T 2l32_A 19 DDGTYADLVRA-VDLSPHEV-------TVLVDGRPV-PEDQSVE-VDRVKVL 60 (74)
T ss_dssp TTCSHHHHHHT-TCCCSSCC-------CEECCCCCC-CTTSSSC-CCCEEEC
T ss_pred CCCcHHHHHHH-cCCCcceE-------EEEECCEEC-CHHHCCC-CCEEEEE
Confidence 45678888876 67665432 488999998 4777665 9999884
No 63
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=44.70 E-value=4.1 Score=29.08 Aligned_cols=45 Identities=11% Similarity=0.268 Sum_probs=33.5
Q ss_pred HHhC-CCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEE
Q 026574 167 ASAG-FKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219 (236)
Q Consensus 167 ls~~-~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~ 219 (236)
++.. .++|+..+...+.. ....-...|..|+.|.+.|+|.|.+..
T Consensus 10 ia~~~~~ls~~~~~~~l~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 55 (94)
T 1owf_B 10 LATQQSHIPAKTVEDAVKE--------MLEHMASTLAQGERIAIRGFGSFSLHY 55 (94)
T ss_dssp HHHHCTTSCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEEEE
T ss_pred HHHhcCCCCHHHHHHHHHH--------HHHHHHHHHhCCCeEEEcCcEEEEEEE
Confidence 4444 48999999888764 222234578889999999999999864
No 64
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=43.73 E-value=2.2 Score=30.29 Aligned_cols=45 Identities=11% Similarity=0.236 Sum_probs=32.1
Q ss_pred HHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEE
Q 026574 167 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219 (236)
Q Consensus 167 ls~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~ 219 (236)
++...++|+..+...+.. ....-...|..|+.|.+.|+|.|.+..
T Consensus 10 ia~~~~ls~~~~~~~l~~--------~~~~i~~~L~~g~~V~l~gfG~F~v~~ 54 (90)
T 1b8z_A 10 VAKKAGAKKKDVKLILDT--------ILETITEALAKGEKVQIVGFGSFEVRK 54 (90)
T ss_dssp HHHHHTCCHHHHHHHHHH--------HHHHHHHHHHTTCCEEETTTEEEEC--
T ss_pred HHHHhCcCHHHHHHHHHH--------HHHHHHHHHhCCCEEEECCCEEEEEEE
Confidence 445568899988888764 122234568889999999999999854
No 65
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=40.79 E-value=13 Score=27.70 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=19.8
Q ss_pred EEECCEEec---CCCcccCCCCEEEE
Q 026574 187 VRVNWTTVT---KNGTTLRTGDIVSV 209 (236)
Q Consensus 187 V~VNg~~~~---~~~~~v~~GD~Isv 209 (236)
|.|||+.+. ..++.|++||.|++
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEE
Confidence 889998863 57799999999988
No 66
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=39.52 E-value=17 Score=28.89 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=20.8
Q ss_pred cEEECCEEecC---CCcccCCCCEEEEe
Q 026574 186 DVRVNWTTVTK---NGTTLRTGDIVSVS 210 (236)
Q Consensus 186 ~V~VNg~~~~~---~~~~v~~GD~Isvr 210 (236)
.|.||++.+.. .++.|++||.|.+-
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLF 81 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEE
Confidence 58999999853 17899999999994
No 67
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=38.61 E-value=22 Score=26.19 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=26.0
Q ss_pred HCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEE
Q 026574 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218 (236)
Q Consensus 183 ~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~ 218 (236)
....++|||+.+. ....|+.||.|.+=..-.|++.
T Consensus 78 S~ngt~vNg~~i~-~~~~L~~GD~I~iG~~~~~~f~ 112 (120)
T 1wln_A 78 MDAETYVDGQRIS-ETTMLQSGMRLQFGTSHVFKFV 112 (120)
T ss_dssp SSSCEEETSCBCS-SCEEECTTCEEEETTTEEEEEE
T ss_pred CCCCEEECCEEcC-CCEECCCCCEEEECCceEEEEE
Confidence 3467899999995 4568999999988544455554
No 68
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=38.55 E-value=15 Score=26.47 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=23.3
Q ss_pred CcEEECCEEecCCCcccCCCCEEEEeeCCeEEEE
Q 026574 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218 (236)
Q Consensus 185 G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~ 218 (236)
...+|||+.+. +...|+.||.|.+-.. .|++.
T Consensus 69 nGt~vng~~i~-~~~~L~~Gd~i~~G~~-~~~~~ 100 (106)
T 3gqs_A 69 NGVIVEGRKIE-HQSTLSANQVVALGTT-LFLLV 100 (106)
T ss_dssp SCCEETTEECS-SEEECCTTCCEEETTE-EEEEE
T ss_pred CCeEECCEECC-CCeECCCCCEEEECCE-EEEEE
Confidence 35789999985 4568999999988433 45553
No 69
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=35.64 E-value=25 Score=27.11 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=22.3
Q ss_pred HCCcEEECCEEecCCCcccCCCCEEEEee
Q 026574 183 SNGDVRVNWTTVTKNGTTLRTGDIVSVSG 211 (236)
Q Consensus 183 ~~G~V~VNg~~~~~~~~~v~~GD~Isvrg 211 (236)
.....+|||+.+......|+.||+|.+-.
T Consensus 85 S~NGT~VNg~~i~~~~~~L~~GD~I~lG~ 113 (151)
T 2jqj_A 85 SRNGTFINGNRLVKKDYILKNGDRIVFGK 113 (151)
T ss_dssp CSSCEEETTEECCSSCEEECSSEEEEETT
T ss_pred CCCCeEECCEEcCCCceECCCCCEEEECC
Confidence 34568999999953257899999998844
No 70
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=35.10 E-value=22 Score=25.21 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.5
Q ss_pred CcEEECCEEecCCCcccCCCCEEEE
Q 026574 185 GDVRVNWTTVTKNGTTLRTGDIVSV 209 (236)
Q Consensus 185 G~V~VNg~~~~~~~~~v~~GD~Isv 209 (236)
...+|||+.+. ...|++||.|.+
T Consensus 65 nGt~vng~~i~--~~~L~~gd~i~i 87 (100)
T 3po8_A 65 NGTTVNNAPVQ--EWQLADGDVIRL 87 (100)
T ss_dssp SCCEETTEECS--EEECCTTCEEEE
T ss_pred CCEEECCEECc--eEECCCCCEEEE
Confidence 35889999984 578999999987
No 71
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=33.54 E-value=13 Score=27.72 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=20.0
Q ss_pred cEEECCEEe---cCCCcccCCCCEEEE
Q 026574 186 DVRVNWTTV---TKNGTTLRTGDIVSV 209 (236)
Q Consensus 186 ~V~VNg~~~---~~~~~~v~~GD~Isv 209 (236)
.|.||++.+ ...++.|+.||.|++
T Consensus 75 ~VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 75 LVLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp EEEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred EEEECCeeeeccCCcCcCCCCCCEEEE
Confidence 389999854 357899999999988
No 72
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=33.50 E-value=1.1e+02 Score=21.33 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=36.1
Q ss_pred CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCC-EEEEeeCCeEEEEEeeccccccEEEE
Q 026574 172 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD-IVSVSGKGRIKIGEINSTRKGKFAVE 231 (236)
Q Consensus 172 ~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD-~Isvrg~Gr~~~~~~~~TKKgr~~i~ 231 (236)
.+||..|.+++.++. .+|.-.-..+. -.+|+ .||++-.|+++=-.|..+..|++.+.
T Consensus 9 ~isR~~Ae~lL~~~~--~~G~FLVR~S~-~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~ 66 (103)
T 1i3z_A 9 CLTKRECEALLLKGG--VDGNFLIRDSE-SVPGALCLCVSFKKLVYSYRIFREKHGYYRIE 66 (103)
T ss_dssp SCCHHHHHHHHHTTC--STTEEEEEECS-SSTTCEEEEEECSSSEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHhhcC--CCceEEEEeCC-CCCCCEEEEEEECCEEEEEEEEECCCCeEEEe
Confidence 689999999997532 34443322221 12343 78888888877555655667777764
No 73
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=32.56 E-value=46 Score=24.98 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.2
Q ss_pred CcEEECCEEecCCCcccCCCCEEEEeeC
Q 026574 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGK 212 (236)
Q Consensus 185 G~V~VNg~~~~~~~~~v~~GD~Isvrg~ 212 (236)
..++|||+.+.. ..|+.||+|.+=..
T Consensus 82 NGT~vNg~~i~~--~~L~~GD~I~iG~~ 107 (131)
T 3hx1_A 82 NGLMINGKKVQE--HIIQTGDEIVMGPQ 107 (131)
T ss_dssp SCEEETTEEESE--EECCTTCEEECSTT
T ss_pred CceEECCEEeEe--EECCCCCEEEECCE
Confidence 568999999853 89999999988443
No 74
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=31.56 E-value=42 Score=25.29 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=20.1
Q ss_pred CCcEEECCEEecCCC--cccCCCCEEEE
Q 026574 184 NGDVRVNWTTVTKNG--TTLRTGDIVSV 209 (236)
Q Consensus 184 ~G~V~VNg~~~~~~~--~~v~~GD~Isv 209 (236)
....+|||+.+. +. ..|+.||+|.+
T Consensus 93 tNGT~vNg~ri~-~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 93 THGTFLNKTRIP-PRTYCRVHVGHVVRF 119 (130)
T ss_dssp SSCEEETTEECC-TTCCEECCTTCEEEE
T ss_pred CCceEECCEECC-CCceeECCCCCEEEE
Confidence 456889999985 44 47999999987
No 75
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=28.78 E-value=37 Score=24.72 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=22.8
Q ss_pred CCcEEECCEEecCCCcccCCCCEEEEeeCCeEEE
Q 026574 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKI 217 (236)
Q Consensus 184 ~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~ 217 (236)
....+|||+.+. ...|+.||.|.+=. -+|.+
T Consensus 72 ~nGt~vng~~i~--~~~L~~gd~i~iG~-~~l~~ 102 (115)
T 2xt9_B 72 LNGTYVNREPVD--SAVLANGDEVQIGK-FRLVF 102 (115)
T ss_dssp SSCEEETTEECS--EEEECTTCEEEETT-EEEEE
T ss_pred CCCeEECCEEcc--eEECCCCCEEEECC-EEEEE
Confidence 345789999985 57899999999832 24444
No 76
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=28.27 E-value=49 Score=24.92 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=21.1
Q ss_pred CcEEECCEEecCC--CcccCCCCEEEEee
Q 026574 185 GDVRVNWTTVTKN--GTTLRTGDIVSVSG 211 (236)
Q Consensus 185 G~V~VNg~~~~~~--~~~v~~GD~Isvrg 211 (236)
...+|||+.+. + ...|+.||+|.+=.
T Consensus 75 NGT~vNg~~l~-~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 75 NGVWLNRARLE-PLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp SCEEETTEECC-TTCCEECCTTCEEEESC
T ss_pred CCeEECCEEcC-CCCcEECCCCCEEEECC
Confidence 45789999984 4 48899999999944
No 77
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=27.87 E-value=1.1e+02 Score=21.38 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=35.5
Q ss_pred CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCC-EEEEeeCCeEEEEEeeccccccEEEE
Q 026574 172 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD-IVSVSGKGRIKIGEINSTRKGKFAVE 231 (236)
Q Consensus 172 ~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD-~Isvrg~Gr~~~~~~~~TKKgr~~i~ 231 (236)
.+||..|.+++.++. .+|.-.-..+.. .+|+ .|||+..|+++=-.|..+..|++.+.
T Consensus 10 ~isR~~Ae~lL~~~~--~~G~FLVR~S~~-~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (104)
T 1d4t_A 10 KISRETGEKLLLATG--LDGSYLLRDSES-VPGVYCLCVLYHGYIYTYRVSQTETGSWSAE 67 (104)
T ss_dssp SCCHHHHHHHHHHHC--CTTEEEEEECSS-STTCEEEEEEETTEEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHHhcC--CCCEEEEeeCCC-CCCCEEEEEEECCeEEEEEEEECCCCeEEEe
Confidence 699999999986321 334432222211 2444 78999888877555655667777764
No 78
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=27.78 E-value=11 Score=30.94 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=33.1
Q ss_pred HHhCCCcCHHHHHHHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEE
Q 026574 167 ASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGE 219 (236)
Q Consensus 167 ls~~~~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~ 219 (236)
++...++|+..+...+.. ....-...|..|+.|.+.|+|.|.+..
T Consensus 56 ia~~~~lsk~da~~vl~~--------l~~~i~~~L~~G~~V~L~GfGtF~v~~ 100 (204)
T 2iie_A 56 LFDKLGLSKRDAKELVEL--------FFEEIRRALENGEQVKLSGFGNFDLRD 100 (204)
T ss_dssp HHHHHCCCHHHHHHHHHH--------HHHHHHHHHHTTCEEEETTTEEEEEEE
T ss_pred HHHHcCCCHHHHHHHHHH--------HHHHHHHHHhCCCeEEecCCEEEEEEE
Confidence 445568899888887664 222234578889999999999999864
No 79
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=27.49 E-value=29 Score=25.81 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=24.1
Q ss_pred CcEEECCEEecCCCcccCCCCEEEEeeCCeEEEE
Q 026574 185 GDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIG 218 (236)
Q Consensus 185 G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~ 218 (236)
..++|||+.+. ....|+.||.|.+= .-.|++.
T Consensus 75 nGt~vNg~~i~-~~~~L~~Gd~i~iG-~~~~~~~ 106 (128)
T 1r21_A 75 NPTQVNGSVID-EPVRLKHGDVITII-DRSFRYE 106 (128)
T ss_dssp SCCEETTEECS-SCEECCTTEEEECS-SCEEEEE
T ss_pred CCEEECCEECC-CcEEcCCCCEEEEC-CEEEEEE
Confidence 45789999985 46789999999984 3356554
No 80
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=26.53 E-value=47 Score=24.60 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=21.3
Q ss_pred CCcEEECCEEecC-CCcccCCCCEEEEee
Q 026574 184 NGDVRVNWTTVTK-NGTTLRTGDIVSVSG 211 (236)
Q Consensus 184 ~G~V~VNg~~~~~-~~~~v~~GD~Isvrg 211 (236)
....+|||+.+.. ....|+.||.|.+=.
T Consensus 78 ~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~ 106 (127)
T 1g6g_A 78 TNGTWLNGQKVEKNSNQLLSQGDEITVGV 106 (127)
T ss_dssp SSCCEETTEECCTTCCEECCTTCEEEECT
T ss_pred cCCeEECCEEcCCCCeEEcCCCCEEEECC
Confidence 4557899999853 147899999999844
No 81
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=24.74 E-value=25 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=22.6
Q ss_pred CCcEEECCEEecCCCcccCCCCEEEEeeCCeE
Q 026574 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215 (236)
Q Consensus 184 ~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~ 215 (236)
+|.|.+||..+ ..+++||.|-|-.|+-+
T Consensus 40 SG~I~lNGAAA----rl~~~GD~vII~aY~~~ 67 (97)
T 1uhe_A 40 RGEICVNGAAA----RKVAIGDVVIILAYASM 67 (97)
T ss_dssp TTCEEEEGGGG----GGCCTTCEEEEEEEEEE
T ss_pred CCeEEEchHHH----ccCCCCCEEEEEECccC
Confidence 68899999644 58999999999877633
No 82
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=24.43 E-value=26 Score=25.90 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=22.9
Q ss_pred CCcEEECCEEecCCCcccCCCCEEEEeeCCeE
Q 026574 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215 (236)
Q Consensus 184 ~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~ 215 (236)
+|.|.+||..+ ..+++||.|-|-.|+-+
T Consensus 41 SG~I~lNGAAA----rl~~~GD~vII~aY~~~ 68 (102)
T 3plx_B 41 EGVVCLNGAAA----RLAEVGDKVIIMSYADF 68 (102)
T ss_dssp TTCEEEEGGGG----GGCCTTCEEEEEEEEEE
T ss_pred CCEEEeCcHHH----hccCCCCEEEEEEcccC
Confidence 58899999654 58999999999887744
No 83
>2ker_A Parvulustat, alpha-amylase inhibitor Z-2685; parvulustat (Z-2685), hydrolase inhibitor; NMR {Streptomyces parvulus}
Probab=23.89 E-value=19 Score=25.05 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.0
Q ss_pred CCEEecCCCcccCCCCEEEEeeCC
Q 026574 190 NWTTVTKNGTTLRTGDIVSVSGKG 213 (236)
Q Consensus 190 Ng~~~~~~~~~v~~GD~Isvrg~G 213 (236)
||+.+ |-..+.|||++++-|+|
T Consensus 37 dG~~~--PCrv~~PG~~~Tf~GyG 58 (78)
T 2ker_A 37 HGQWA--PCRVIEPGGWATFAGYG 58 (78)
T ss_dssp SCCSC--CCEEECTTCCCEEECSC
T ss_pred CCCcc--eeEEeCCCCEEEecccc
Confidence 66654 78899999999999998
No 84
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=23.82 E-value=23 Score=20.49 Aligned_cols=17 Identities=24% Similarity=0.665 Sum_probs=14.5
Q ss_pred ccchHHHHHcCCCCccc
Q 026574 82 HGDFLGSILGTGIAREK 98 (236)
Q Consensus 82 Hrd~LGalm~lGi~Re~ 98 (236)
.+..|+||++.|+.+|.
T Consensus 9 Q~eLL~aLL~SGlsKe~ 25 (32)
T 1g2y_A 9 QTEMLAALLESGLSKEA 25 (32)
T ss_dssp HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHcCCcHHH
Confidence 36789999999999874
No 85
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=23.33 E-value=45 Score=25.52 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=21.3
Q ss_pred CcEEECCEEecC-CCcccCCCCEEEEeeC
Q 026574 185 GDVRVNWTTVTK-NGTTLRTGDIVSVSGK 212 (236)
Q Consensus 185 G~V~VNg~~~~~-~~~~v~~GD~Isvrg~ 212 (236)
...+|||+.+.. ....|+.||+|.+-..
T Consensus 103 NGT~VNg~~i~~~~~~~L~~GD~I~lG~~ 131 (149)
T 1gxc_A 103 NGTFVNTELVGKGKRRPLNNNSEIALSLS 131 (149)
T ss_dssp SCEEETTEECCTTCEEECCTTEEEEESST
T ss_pred CCeEECCEECCCCCeEECCCCCEEEECCC
Confidence 457999999842 2578999999999543
No 86
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=23.16 E-value=1.7e+02 Score=21.10 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=34.6
Q ss_pred CcCHHHHHHHHHC-CcEEECCEEecCCCcccCCCC-EEEEeeCCeEEEEEeeccccccEEEE
Q 026574 172 KLSRSKLVNLISN-GDVRVNWTTVTKNGTTLRTGD-IVSVSGKGRIKIGEINSTRKGKFAVE 231 (236)
Q Consensus 172 ~~SR~~a~~lI~~-G~V~VNg~~~~~~~~~v~~GD-~Isvrg~Gr~~~~~~~~TKKgr~~i~ 231 (236)
.+||..|.+++.+ + .+|.-.-..+.. .+|+ .|||+..|+++=-.|..+..|++.|.
T Consensus 16 ~isR~eAe~lL~~~~---~~G~FLVR~S~~-~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~ 73 (119)
T 2ysx_A 16 NITRSKAEELLSRTG---KDGSFLVRASES-ISRAYALCVLYRNCVYTYRILPNEDDKFTVQ 73 (119)
T ss_dssp SCCHHHHHHHHHHHC---CTTEEEEEECSS-CTTSEEEEEECSSCEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHhhcC---CCCEEEEEeCCC-CCCCEEEEEEECCEEEEEEEEEcCCCCEEEe
Confidence 6899999999874 2 233332222211 2343 78888888877555655667777764
No 87
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=23.16 E-value=58 Score=25.38 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=22.4
Q ss_pred HCCcEEECCEEecCC--CcccCCCCEEEEeeC
Q 026574 183 SNGDVRVNWTTVTKN--GTTLRTGDIVSVSGK 212 (236)
Q Consensus 183 ~~G~V~VNg~~~~~~--~~~v~~GD~Isvrg~ 212 (236)
.....+|||+.+. + ...|+.||.|.+=..
T Consensus 105 S~NGT~vNg~~i~-~~~~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 105 STNGTWLNGQKVE-KNSNQLLSQGDEITVGVG 135 (164)
T ss_dssp CSSCEEETTEEEC-TTEEEECCTTCEEEESCS
T ss_pred CCCCeEECCEEcC-CCCceEcCCCCEEEECCC
Confidence 3456889999985 4 378999999988543
No 88
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=23.02 E-value=1.1e+02 Score=22.52 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=34.9
Q ss_pred CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCC-EEEEeeCCeEEEEEeeccccccEEEE
Q 026574 172 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD-IVSVSGKGRIKIGEINSTRKGKFAVE 231 (236)
Q Consensus 172 ~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD-~Isvrg~Gr~~~~~~~~TKKgr~~i~ 231 (236)
.+||..|.+++.++. .+|.-.-..+.. .+|+ .+||+..|+++=-.|..+..|++.+.
T Consensus 10 ~isR~eAe~lL~~~~--~~G~FLVR~S~~-~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (128)
T 1ka6_A 10 KISRETGEKLLLATG--LDGSYLLRDSES-VPGVYCLCVLYHGYIYTYRVSQTETGSWSAE 67 (128)
T ss_dssp SCCHHHHHHHHHHHC--CTTCEEEEECSS-STTCEEEEEESSSCEEEEEEEECTTSCEEEE
T ss_pred CCCHHHHHHHHhcCC--CCCEEEEeecCC-CCCCEEEEEEeCCEEEEEEEEECCCCeEEEe
Confidence 699999999986211 223222112211 2343 78899888877555655677888775
No 89
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A
Probab=22.81 E-value=1.8e+02 Score=20.50 Aligned_cols=55 Identities=27% Similarity=0.400 Sum_probs=34.9
Q ss_pred CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCC-EEEEeeCCeEEEEEeeccccccEEE
Q 026574 172 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD-IVSVSGKGRIKIGEINSTRKGKFAV 230 (236)
Q Consensus 172 ~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD-~Isvrg~Gr~~~~~~~~TKKgr~~i 230 (236)
.+||..|.++++++ .+|.-.-..+. -.+|+ .+|++..|+++=-.|..+..|++.+
T Consensus 11 ~isR~~Ae~lL~~~---~~G~FLVR~S~-~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~ 66 (112)
T 3k2m_A 11 PVSRNAAEYLLSSG---INGSFLVRESE-SSPGQRSISLRYEGRVYHYRINTASDGKLYV 66 (112)
T ss_dssp SCCHHHHHHHTTTC---CTTEEEEEECS-SSTTCEEEEEEETTEEEEEEEEECTTSCEES
T ss_pred CCCHHHHHHHhccC---CCceEEEEeCC-CCCCCEEEEEEeCCcEEEEEEEECCCCcEEE
Confidence 68999999998753 24543322221 12455 8999999987755555556666543
No 90
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=22.33 E-value=29 Score=25.34 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=22.5
Q ss_pred CCcEEECCEEecCCCcccCCCCEEEEeeCCeE
Q 026574 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRI 215 (236)
Q Consensus 184 ~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~ 215 (236)
+|.|.+||..+ ..+++||.|-|-.|+-+
T Consensus 42 SG~I~lNGAAA----rl~~~GD~vII~aY~~~ 69 (96)
T 1vc3_B 42 SGVIGINGAAA----HLVKPGDLVILVAYGVF 69 (96)
T ss_dssp TTCEEEEGGGG----GTCCTTCEEEEEEEEEE
T ss_pred CCeEEEchHHH----ccCCCCCEEEEEECccC
Confidence 68899999654 48999999999877643
No 91
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=22.29 E-value=48 Score=24.28 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=19.2
Q ss_pred EEECCEEecCCCcccCCCCEEEEee
Q 026574 187 VRVNWTTVTKNGTTLRTGDIVSVSG 211 (236)
Q Consensus 187 V~VNg~~~~~~~~~v~~GD~Isvrg 211 (236)
|.-||+...-+...|.+||+|.++-
T Consensus 16 v~r~g~~~~i~~~~l~~GDiv~v~~ 40 (113)
T 2hc8_A 16 VIRDGKEIAVPVEEVAVGDIVIVRP 40 (113)
T ss_dssp EEETTEEEEEEGGGCCTTCEEEECT
T ss_pred EEECCEEEEEEHHHCCCCCEEEECC
Confidence 4447766556788999999999974
No 92
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=22.19 E-value=86 Score=22.26 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=26.9
Q ss_pred CccCCCccchHHHHHcCCCCccccccEEEecCCeEEEEec
Q 026574 76 GFQPCSHGDFLGSILGTGIAREKIGDIILQGEKGAQFLVV 115 (236)
Q Consensus 76 kf~~l~Hrd~LGalm~lGi~Re~iGDI~~~~~~~~~~~v~ 115 (236)
.|..-.-+|++|+|..+|+ .|.|+...|+-+|+..+
T Consensus 26 gfg~~~v~ev~~am~~~g~----~gkii~~~dGl~y~~T~ 61 (85)
T 2l48_A 26 AFSPYETPDVMGALTSLKM----TADFILQSDGLTYFISK 61 (85)
T ss_dssp CBCTTTHHHHHHHHHHTTC----CEEEEECTTSCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHcCc----eEEEEECCCceEEEEeC
Confidence 3444456899999999987 48888887766776554
No 93
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=22.03 E-value=74 Score=23.52 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=23.8
Q ss_pred HHHHHCCcEEECCEEecCCCcccCCCCEEEEe
Q 026574 179 VNLISNGDVRVNWTTVTKNGTTLRTGDIVSVS 210 (236)
Q Consensus 179 ~~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvr 210 (236)
-++|++|.=.+-++..+..-..+++||.|.+.
T Consensus 12 f~~I~~G~KtiEiRlnd~k~~~ikvGD~I~f~ 43 (109)
T 2z0t_A 12 IELIKAGKKKIEGRLYDEKRRQIKPGDIIIFE 43 (109)
T ss_dssp HHHHHTTSCCEEEEECCTTGGGCCTTCEEEEG
T ss_pred HHHHHcCCCEEEEEecchhhhcCCCCCEEEEC
Confidence 35688887777777664444589999999993
No 94
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=21.85 E-value=30 Score=25.14 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=20.3
Q ss_pred CcEEECCEEecC-CCcccCCCCEEEEee
Q 026574 185 GDVRVNWTTVTK-NGTTLRTGDIVSVSG 211 (236)
Q Consensus 185 G~V~VNg~~~~~-~~~~v~~GD~Isvrg 211 (236)
..++|||+.+.. ....|+.||.|.+-.
T Consensus 68 NGt~vng~~l~~~~~~~L~~GD~i~~G~ 95 (116)
T 1lgp_A 68 SGTVINKLKVVKKQTCPLQTGDVIYLVY 95 (116)
T ss_dssp SCCCCCCCCCCCSSCCCCCTTCEEEEEC
T ss_pred CCcEECCEEcCCCCcEECCCCCEEEEec
Confidence 346789988742 157899999999865
No 95
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=21.72 E-value=41 Score=25.82 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.4
Q ss_pred CcEEECCEEecCCCcccCCCCEEEE
Q 026574 185 GDVRVNWTTVTKNGTTLRTGDIVSV 209 (236)
Q Consensus 185 G~V~VNg~~~~~~~~~v~~GD~Isv 209 (236)
..++|||+.+. ...|+.||.|.+
T Consensus 108 NGT~VNg~~i~--~~~L~~GD~I~i 130 (143)
T 2kb3_A 108 NGTYVNREPRN--AQVMQTGDEIQI 130 (143)
T ss_dssp SCCEETTEECS--EEECCTTEEEEE
T ss_pred CCeEECCEEcc--eEECCCCCEEEE
Confidence 45789999985 578999999988
No 96
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=21.62 E-value=37 Score=25.32 Aligned_cols=41 Identities=12% Similarity=0.241 Sum_probs=26.8
Q ss_pred HHHHCCcEEECCEEecCCCcccCCCCEEEEeeCCeEEEEEe
Q 026574 180 NLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEI 220 (236)
Q Consensus 180 ~lI~~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~~~~~ 220 (236)
++|++|.=.+-++..+..-..+++||.|.+...-..++.++
T Consensus 14 ~~I~sG~KtiEiR~nd~~~~~i~vGD~I~f~~~l~~~V~~v 54 (113)
T 1xne_A 14 EMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEV 54 (113)
T ss_dssp HHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEE
T ss_pred HHHHcCCcEEEEEecchhhhccCCCCEEEEccceEEEEEEE
Confidence 45777765565555543445789999999977444445444
No 97
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=21.07 E-value=13 Score=25.76 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=9.4
Q ss_pred HHHcCCCCccccccEE
Q 026574 88 SILGTGIAREKIGDII 103 (236)
Q Consensus 88 alm~lGi~Re~iGDI~ 103 (236)
.|..||| |+ |||+
T Consensus 43 ~Lr~LGi-~e--GDII 55 (72)
T 3idw_A 43 MLRTLGL-RE--GDIV 55 (72)
T ss_dssp HHHHTTC-CH--HHHH
T ss_pred HHHHcCC-ch--hhHH
Confidence 3556999 44 9996
No 98
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=20.88 E-value=1.4e+02 Score=20.75 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=34.2
Q ss_pred CcCHHHHHHHHHCCcEEECCEEecCCCcccCCCC-EEEEeeCCeEEEEEeeccccccEEE
Q 026574 172 KLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGD-IVSVSGKGRIKIGEINSTRKGKFAV 230 (236)
Q Consensus 172 ~~SR~~a~~lI~~G~V~VNg~~~~~~~~~v~~GD-~Isvrg~Gr~~~~~~~~TKKgr~~i 230 (236)
.+||..|.+++.+. -+|.-.-..+.. .+|+ .+|++..|+++=-.|..+..|++.+
T Consensus 15 ~isR~~Ae~lL~~~---~~G~FLVR~S~~-~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l 70 (100)
T 1r1p_A 15 GLSRHQAENLLMGK---DIGFFIIRASQS-SPGDFSISVRHEDDVQHFKVMRDTKGNYFL 70 (100)
T ss_dssp TCCHHHHHHHHHTS---CTTBEEEEECSS-STTCEEEEEECSSSEEEEECEECTTCCEES
T ss_pred CCCHHHHHHHhcCC---CCCEEEEEecCC-CCCCEEEEEEECCEEEEEEEEEcCCCCEEE
Confidence 69999999998753 234332222211 2343 7888888887755555555677654
No 99
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=20.78 E-value=47 Score=25.09 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=25.5
Q ss_pred CCcEEECCEEecC---------CCcccCCCCEEEEeeCCeEEEEEe
Q 026574 184 NGDVRVNWTTVTK---------NGTTLRTGDIVSVSGKGRIKIGEI 220 (236)
Q Consensus 184 ~G~V~VNg~~~~~---------~~~~v~~GD~Isvrg~Gr~~~~~~ 220 (236)
....+|||+.+.. ....|+.||+|.+ |.-.+.+..+
T Consensus 75 ~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i-G~~~~~~~~~ 119 (139)
T 1mzk_A 75 LNGTLVNSHSISHPDLGSRKWGNPVELASDDIITL-GTTTKVYVRI 119 (139)
T ss_dssp SSCCEETTEESSCCCTTTCCCCCCEECCTTEEEEC-SSSCEEEEEE
T ss_pred CCCEEECCEECcCcccccccCCceEECCCCCEEEE-CCEEEEEEEc
Confidence 3457899999863 2688999999988 3345665444
No 100
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=20.46 E-value=34 Score=25.70 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=23.3
Q ss_pred CCcEEECCEEecCCCcccCCCCEEEEeeCCeEE
Q 026574 184 NGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIK 216 (236)
Q Consensus 184 ~G~V~VNg~~~~~~~~~v~~GD~Isvrg~Gr~~ 216 (236)
+|.|.+||..+ ..+++||.|-|-.|+-+.
T Consensus 69 Sg~I~lNGAAA----r~~~~GD~vII~ay~~~~ 97 (114)
T 3oug_A 69 SKTIALNGPAA----RRCEIGDQLFIISYTQVD 97 (114)
T ss_dssp SCCEEEEGGGG----GGCCTTCEEEEEEEEEEC
T ss_pred CCEEEeCCHHH----hccCCCCEEEEEECCcCC
Confidence 58899999644 489999999998876554
Done!