Query 026575
Match_columns 236
No_of_seqs 164 out of 727
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:50:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 77.0 1 3.5E-05 29.8 1.5 12 152-163 38-49 (49)
2 3rk3_E Complexin-1; snare prot 74.9 1.3 4.4E-05 30.7 1.7 14 152-165 41-54 (63)
3 1l4a_E Synaphin A; snare, snar 71.7 1.7 5.7E-05 31.4 1.7 14 152-165 45-58 (79)
4 2lo3_A SAGA-associated factor 16.8 44 0.0015 21.5 0.9 19 32-51 10-28 (44)
5 3zwz_B RON2, rhoptry NECK prot 16.4 58 0.002 20.3 1.3 24 184-210 4-27 (39)
6 1x62_A C-terminal LIM domain p 11.7 1.8E+02 0.0061 19.5 3.0 32 39-70 14-45 (79)
7 3mhs_E SAGA-associated factor 9.9 85 0.0029 23.5 0.8 23 28-51 64-86 (96)
8 3sri_B Rhoptry NECK protein 2; 9.8 77 0.0026 18.5 0.4 18 193-210 4-21 (29)
9 1zbd_B Rabphilin-3A; G protein 8.6 1.4E+02 0.0046 23.3 1.5 15 179-193 100-114 (134)
10 1wig_A KIAA1808 protein; LIM d 8.6 3.4E+02 0.012 17.8 3.5 31 40-70 5-35 (73)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=77.04 E-value=1 Score=29.84 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCC
Q 026575 152 NLRQNLQKKYHL 163 (236)
Q Consensus 152 ~~R~~IR~kYgI 163 (236)
..|+.||.||||
T Consensus 38 ~mRq~IRdKY~i 49 (49)
T 1kil_E 38 VMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC
Confidence 579999999998
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=74.92 E-value=1.3 Score=30.68 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCCC
Q 026575 152 NLRQNLQKKYHLKN 165 (236)
Q Consensus 152 ~~R~~IR~kYgI~G 165 (236)
.+|+.||.||||+-
T Consensus 41 ~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 41 AVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhccch
Confidence 58999999999973
No 3
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=71.66 E-value=1.7 Score=31.42 Aligned_cols=14 Identities=43% Similarity=0.809 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCCC
Q 026575 152 NLRQNLQKKYHLKN 165 (236)
Q Consensus 152 ~~R~~IR~kYgI~G 165 (236)
.+|+.||.||||+-
T Consensus 45 ~mRq~IRdKY~ikK 58 (79)
T 1l4a_E 45 EMRQTIRDKYGLKK 58 (79)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhcccc
Confidence 58999999999974
No 4
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=16.84 E-value=44 Score=21.51 Aligned_cols=19 Identities=32% Similarity=1.024 Sum_probs=14.9
Q ss_pred CcccCcccccccccCCCCCC
Q 026575 32 PIEVPQLNVHRCNECGQPLP 51 (236)
Q Consensus 32 p~~vP~~~~~~~~~~gq~~P 51 (236)
|++ ++.+-+.|+.||||.-
T Consensus 10 ple-~~~~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 10 PLD-KPIQYRVCEKCGKPLA 28 (44)
T ss_dssp CCC-CCCCEEECTTTCCEEE
T ss_pred ccC-ccccchhhcccCCcch
Confidence 555 6678899999999764
No 5
>3zwz_B RON2, rhoptry NECK protein 2; immune system, malaria, moving junction; 2.10A {Plasmodium falciparum}
Probab=16.38 E-value=58 Score=20.27 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=15.8
Q ss_pred HHHHHHHhhhcCCCCCCccccCCCCcc
Q 026575 184 QEHREMKNRLSDNVAMPMTVVNPPPVQ 210 (236)
Q Consensus 184 Qe~RElk~r~~~~~~~~~~~~~pp~~q 210 (236)
|++..+ +..|....++...|||.|
T Consensus 4 QhA~Di---G~GPv~SC~ts~i~PPk~ 27 (39)
T 3zwz_B 4 QQAKDI---GAGPVASCFTTRMSPPQQ 27 (39)
T ss_dssp HHHHHT---TCCCCCSEEEESSSSCCE
T ss_pred hhhhhc---cCCchhhhhhccCCcHHH
Confidence 444444 777887777766676665
No 6
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=11.67 E-value=1.8e+02 Score=19.46 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=22.2
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCcCCcccc
Q 026575 39 NVHRCNECGQPLPEDFEPPADEPWTTGIFGCT 70 (236)
Q Consensus 39 ~~~~~~~~gq~~P~s~~p~~~~~WstGLfdC~ 70 (236)
...+|..|+++.-..+-...+..|+..-|-|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~ 45 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECYVCT 45 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTTSCS
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcCeeC
Confidence 34679999998765443345678988877763
No 7
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=9.93 E-value=85 Score=23.48 Aligned_cols=23 Identities=30% Similarity=0.969 Sum_probs=17.7
Q ss_pred CCCCCcccCcccccccccCCCCCC
Q 026575 28 ELNQPIEVPQLNVHRCNECGQPLP 51 (236)
Q Consensus 28 ~~~qp~~vP~~~~~~~~~~gq~~P 51 (236)
.+-.|.+.| .+-+.|+.||+|.-
T Consensus 64 ii~~~Ld~~-~~YRvCn~CGkPI~ 86 (96)
T 3mhs_E 64 LIEDPLDKP-IQYRVCEKCGKPLA 86 (96)
T ss_dssp CCSSTTSSS-CCCEEETTTCCEEC
T ss_pred hhcccCCCc-ccchhhhccCCcee
Confidence 344477777 88999999999864
No 8
>3sri_B Rhoptry NECK protein 2; AMA1, RON2, malaria, cell invasion; 1.60A {Plasmodium falciparum}
Probab=9.79 E-value=77 Score=18.48 Aligned_cols=18 Identities=33% Similarity=0.259 Sum_probs=11.6
Q ss_pred hcCCCCCCccccCCCCcc
Q 026575 193 LSDNVAMPMTVVNPPPVQ 210 (236)
Q Consensus 193 ~~~~~~~~~~~~~pp~~q 210 (236)
+..|.....+...|||.|
T Consensus 4 G~GP~tSCyTs~~~PPkq 21 (29)
T 3sri_B 4 GAGPVASCFTTRMSPPQQ 21 (29)
T ss_dssp CCCCCCSEEEESSSSCCE
T ss_pred ccCcchheeecccCchHH
Confidence 455666667766677665
No 9
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=8.55 E-value=1.4e+02 Score=23.26 Aligned_cols=15 Identities=40% Similarity=0.838 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHhhh
Q 026575 179 WCALCQEHREMKNRL 193 (236)
Q Consensus 179 ~CaL~Qe~RElk~r~ 193 (236)
-|.+||..|||+...
T Consensus 100 ~C~vC~k~rel~~kS 114 (134)
T 1zbd_B 100 LCKICLEQREVWKRS 114 (134)
T ss_dssp EEHHHHHHHHHHHHT
T ss_pred echhhHHHHHHHHhh
Confidence 478999999998653
No 10
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=8.55 E-value=3.4e+02 Score=17.78 Aligned_cols=31 Identities=10% Similarity=0.335 Sum_probs=22.3
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCcCCcccc
Q 026575 40 VHRCNECGQPLPEDFEPPADEPWTTGIFGCT 70 (236)
Q Consensus 40 ~~~~~~~gq~~P~s~~p~~~~~WstGLfdC~ 70 (236)
..+|..|+++.-..+-...+..|+..-|-|.
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~ 35 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSCALCV 35 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTTSCCS
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCcCEeC
Confidence 3568888887765554456778999888874
Done!