Query 026576
Match_columns 236
No_of_seqs 112 out of 722
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:51:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yrb_A ATP(GTP)binding protein 99.9 2.9E-24 1E-28 184.8 15.5 213 1-222 44-261 (262)
2 3iev_A GTP-binding protein ERA 98.7 6E-08 2E-12 86.2 11.4 156 38-225 19-189 (308)
3 4dhe_A Probable GTP-binding pr 98.7 8.6E-07 2.9E-11 73.2 15.3 127 67-219 79-212 (223)
4 2dyk_A GTP-binding protein; GT 98.6 4.5E-07 1.5E-11 70.4 10.6 111 67-216 49-160 (161)
5 3pqc_A Probable GTP-binding pr 98.5 2.5E-06 8.7E-11 68.2 14.5 121 67-217 68-193 (195)
6 3i8s_A Ferrous iron transport 98.5 1.9E-07 6.5E-12 81.6 6.7 116 66-217 49-168 (274)
7 3iby_A Ferrous iron transport 98.5 3.1E-07 1.1E-11 79.7 7.7 113 67-215 48-164 (256)
8 1lnz_A SPO0B-associated GTP-bi 98.5 2.3E-07 7.7E-12 84.3 6.9 119 67-218 206-330 (342)
9 1wb1_A Translation elongation 98.5 8.1E-07 2.8E-11 83.9 10.8 112 68-217 74-188 (482)
10 3sjy_A Translation initiation 98.4 3.7E-06 1.3E-10 77.2 14.0 114 67-218 75-192 (403)
11 3k53_A Ferrous iron transport 98.4 8.3E-07 2.8E-11 76.9 8.6 115 68-218 51-166 (271)
12 2qu8_A Putative nucleolar GTP- 98.4 3.8E-06 1.3E-10 70.2 11.9 122 68-216 77-203 (228)
13 1zj6_A ADP-ribosylation factor 98.4 4.1E-06 1.4E-10 67.3 11.4 123 68-224 61-184 (187)
14 1svi_A GTP-binding protein YSX 98.4 1.6E-05 5.3E-10 63.9 14.9 151 36-216 29-193 (195)
15 3a1s_A Iron(II) transport prot 98.4 1E-06 3.4E-11 76.4 8.2 113 68-217 53-166 (258)
16 3j2k_7 ERF3, eukaryotic polype 98.3 3.2E-06 1.1E-10 78.8 11.8 108 67-208 95-215 (439)
17 1c1y_A RAS-related protein RAP 98.3 2.5E-06 8.7E-11 66.3 8.7 113 68-216 52-165 (167)
18 1wf3_A GTP-binding protein; GT 98.3 6E-06 2.1E-10 73.3 11.9 143 38-219 16-174 (301)
19 1r8s_A ADP-ribosylation factor 98.3 1E-05 3.4E-10 63.0 11.8 114 67-216 44-160 (164)
20 1d2e_A Elongation factor TU (E 98.3 3.3E-06 1.1E-10 77.4 10.0 114 67-217 66-194 (397)
21 2c78_A Elongation factor TU-A; 98.3 7.3E-06 2.5E-10 75.2 12.3 114 67-217 75-211 (405)
22 2elf_A Protein translation elo 98.2 1.5E-05 5E-10 72.9 13.4 112 66-217 59-179 (370)
23 2gj8_A MNME, tRNA modification 98.2 3.3E-06 1.1E-10 67.7 7.9 114 68-220 53-168 (172)
24 1zd9_A ADP-ribosylation factor 98.2 8.4E-06 2.9E-10 65.8 10.1 114 68-217 68-184 (188)
25 2wji_A Ferrous iron transport 98.2 4.9E-06 1.7E-10 65.9 8.5 112 68-216 51-163 (165)
26 3p26_A Elongation factor 1 alp 98.2 5.8E-06 2E-10 77.8 10.4 121 67-218 111-253 (483)
27 1mh1_A RAC1; GTP-binding, GTPa 98.2 6.2E-06 2.1E-10 65.4 9.0 123 69-218 55-180 (186)
28 2fn4_A P23, RAS-related protei 98.2 9.6E-06 3.3E-10 63.8 9.9 110 68-216 58-170 (181)
29 3clv_A RAB5 protein, putative; 98.2 8.7E-06 3E-10 64.9 9.7 109 68-216 94-202 (208)
30 1z2a_A RAS-related protein RAB 98.2 5.1E-06 1.7E-10 64.7 8.0 111 68-216 55-165 (168)
31 3b1v_A Ferrous iron uptake tra 98.2 1.7E-05 5.7E-10 69.4 12.2 114 67-217 49-163 (272)
32 3bwd_D RAC-like GTP-binding pr 98.2 4E-06 1.4E-10 66.4 7.4 119 69-216 58-179 (182)
33 1upt_A ARL1, ADP-ribosylation 98.2 8.4E-06 2.9E-10 63.7 9.2 115 68-216 52-167 (171)
34 3bc1_A RAS-related protein RAB 98.2 8.2E-06 2.8E-10 64.9 9.2 112 68-216 71-183 (195)
35 2ce2_X GTPase HRAS; signaling 98.2 9.5E-06 3.2E-10 62.5 9.3 108 69-216 53-163 (166)
36 1kk1_A EIF2gamma; initiation o 98.2 1.5E-05 5.2E-10 73.2 12.2 113 68-218 84-200 (410)
37 1z0j_A RAB-22, RAS-related pro 98.2 6.3E-06 2.1E-10 64.3 8.3 110 68-216 56-167 (170)
38 2gco_A H9, RHO-related GTP-bin 98.2 1E-05 3.5E-10 66.0 9.9 120 68-215 74-197 (201)
39 4dsu_A GTPase KRAS, isoform 2B 98.2 1.5E-05 5E-10 63.3 10.6 109 69-217 54-165 (189)
40 3p32_A Probable GTPase RV1496/ 98.2 9.4E-06 3.2E-10 73.3 10.5 111 66-218 171-284 (355)
41 1kao_A RAP2A; GTP-binding prot 98.2 2.1E-05 7.3E-10 60.7 11.1 109 69-216 53-164 (167)
42 2y8e_A RAB-protein 6, GH09086P 98.2 1.5E-05 5.3E-10 62.5 10.3 110 68-216 64-175 (179)
43 2lkc_A Translation initiation 98.1 1.5E-05 5E-10 62.9 10.1 113 68-217 56-170 (178)
44 3kkq_A RAS-related protein M-R 98.1 8.5E-06 2.9E-10 64.8 8.7 108 70-216 69-180 (183)
45 1z08_A RAS-related protein RAB 98.1 1.1E-05 3.6E-10 63.0 9.1 110 68-216 56-167 (170)
46 2wjg_A FEOB, ferrous iron tran 98.1 7E-06 2.4E-10 65.6 8.1 115 68-219 55-170 (188)
47 1u8z_A RAS-related protein RAL 98.1 3E-05 1E-09 59.9 11.4 110 68-216 53-165 (168)
48 2x77_A ADP-ribosylation factor 98.1 7.4E-06 2.5E-10 65.8 7.9 115 68-216 67-182 (189)
49 1z0f_A RAB14, member RAS oncog 98.1 1.7E-05 5.7E-10 62.3 9.9 112 68-216 65-176 (179)
50 2fv8_A H6, RHO-related GTP-bin 98.1 4.1E-06 1.4E-10 68.8 6.5 122 68-216 74-198 (207)
51 4gzl_A RAS-related C3 botulinu 98.1 2.2E-06 7.7E-11 70.4 4.9 121 69-215 80-202 (204)
52 2fg5_A RAB-22B, RAS-related pr 98.1 9.8E-06 3.4E-10 65.6 8.7 111 68-217 73-185 (192)
53 2fh5_B SR-beta, signal recogni 98.1 2.2E-05 7.6E-10 64.3 10.9 135 68-215 55-213 (214)
54 3con_A GTPase NRAS; structural 98.1 1.1E-05 3.7E-10 64.7 8.8 110 69-216 71-181 (190)
55 3t1o_A Gliding protein MGLA; G 98.1 2.4E-05 8.2E-10 62.4 10.6 111 68-216 75-190 (198)
56 4djt_A GTP-binding nuclear pro 98.1 1.6E-05 5.6E-10 65.3 9.6 117 68-221 62-178 (218)
57 1ksh_A ARF-like protein 2; sma 98.1 1.2E-05 4.2E-10 64.1 8.6 113 68-216 63-178 (186)
58 2j1l_A RHO-related GTP-binding 98.1 1.4E-05 4.8E-10 66.1 9.2 123 68-216 83-207 (214)
59 2b6h_A ADP-ribosylation factor 98.1 2.5E-05 8.4E-10 63.5 10.3 113 68-216 74-189 (192)
60 1ky3_A GTP-binding protein YPT 98.1 1.6E-05 5.4E-10 62.6 9.0 114 68-216 59-176 (182)
61 3t5d_A Septin-7; GTP-binding p 98.1 1.2E-05 3.9E-10 69.8 8.8 62 133-219 144-205 (274)
62 2q3h_A RAS homolog gene family 98.1 9.5E-06 3.3E-10 65.7 7.8 121 69-216 70-193 (201)
63 2h17_A ADP-ribosylation factor 98.1 1.4E-05 4.7E-10 64.0 8.7 113 68-214 66-179 (181)
64 2hup_A RAS-related protein RAB 98.1 3E-05 1E-09 63.4 10.9 110 68-216 79-191 (201)
65 2erx_A GTP-binding protein DI- 98.1 4.3E-05 1.5E-09 59.4 11.3 111 68-217 52-166 (172)
66 4bas_A ADP-ribosylation factor 98.1 4.7E-05 1.6E-09 61.1 11.8 114 68-216 64-187 (199)
67 3tkl_A RAS-related protein RAB 98.1 1.5E-05 5.1E-10 63.9 8.8 111 68-217 66-178 (196)
68 2cxx_A Probable GTP-binding pr 98.1 1.4E-05 4.8E-10 63.6 8.6 125 68-217 45-183 (190)
69 2efe_B Small GTP-binding prote 98.1 1.8E-05 6.3E-10 62.4 9.1 111 68-217 62-174 (181)
70 2atx_A Small GTP binding prote 98.1 6.2E-06 2.1E-10 66.5 6.4 121 69-216 68-191 (194)
71 2a9k_A RAS-related protein RAL 98.1 3.4E-05 1.2E-09 60.9 10.7 110 68-216 67-179 (187)
72 2j0v_A RAC-like GTP-binding pr 98.1 1.2E-05 4.1E-10 65.8 8.3 119 68-217 58-179 (212)
73 3izq_1 HBS1P, elongation facto 98.1 7.1E-06 2.4E-10 79.7 7.9 121 68-219 246-388 (611)
74 1wms_A RAB-9, RAB9, RAS-relate 98.1 3E-05 1E-09 61.0 10.2 113 68-217 57-173 (177)
75 2hjg_A GTP-binding protein ENG 98.0 7.6E-06 2.6E-10 75.8 7.7 146 38-217 184-348 (436)
76 1vg8_A RAS-related protein RAB 98.0 1.4E-05 4.9E-10 64.7 8.4 110 68-216 58-173 (207)
77 1ega_A Protein (GTP-binding pr 98.0 2.9E-05 9.9E-10 68.6 10.8 148 36-219 14-176 (301)
78 2g6b_A RAS-related protein RAB 98.0 1.8E-05 6.2E-10 62.4 8.6 111 68-217 61-173 (180)
79 1s0u_A EIF-2-gamma, translatio 98.0 1.6E-05 5.3E-10 73.1 9.3 113 68-218 82-198 (408)
80 2il1_A RAB12; G-protein, GDP, 98.0 3.8E-05 1.3E-09 62.2 10.5 113 68-216 76-188 (192)
81 2atv_A RERG, RAS-like estrogen 98.0 4.5E-05 1.5E-09 61.7 11.0 108 69-216 78-189 (196)
82 2h57_A ADP-ribosylation factor 98.0 3.7E-05 1.3E-09 61.7 10.4 113 67-217 67-186 (190)
83 1g16_A RAS-related protein SEC 98.0 1.8E-05 6.2E-10 61.6 8.1 110 68-217 53-164 (170)
84 4dcu_A GTP-binding protein ENG 98.0 1.5E-05 5.1E-10 74.3 8.8 120 67-217 243-368 (456)
85 1r2q_A RAS-related protein RAB 98.0 2.4E-05 8.1E-10 60.8 8.6 110 68-216 56-167 (170)
86 3q72_A GTP-binding protein RAD 98.0 3.6E-05 1.2E-09 59.9 9.6 110 68-216 50-162 (166)
87 3q85_A GTP-binding protein REM 98.0 4.3E-05 1.5E-09 59.6 10.0 111 68-216 52-165 (169)
88 1ek0_A Protein (GTP-binding pr 98.0 2.8E-05 9.5E-10 60.4 8.8 113 68-216 53-167 (170)
89 3lxx_A GTPase IMAP family memb 98.0 5E-05 1.7E-09 64.0 11.1 128 67-217 78-213 (239)
90 1fzq_A ADP-ribosylation factor 98.0 7E-05 2.4E-09 60.1 11.4 113 68-216 61-176 (181)
91 3t5g_A GTP-binding protein RHE 98.0 2.3E-05 7.7E-10 62.2 8.3 111 69-218 56-169 (181)
92 2fu5_C RAS-related protein RAB 98.0 2.5E-05 8.5E-10 62.0 8.4 110 68-216 58-169 (183)
93 1moz_A ARL1, ADP-ribosylation 98.0 2.9E-05 9.8E-10 61.6 8.7 115 68-216 63-178 (183)
94 1zun_B Sulfate adenylate trans 98.0 5.1E-05 1.7E-09 70.3 11.6 104 68-207 105-213 (434)
95 3cph_A RAS-related protein SEC 98.0 1.8E-05 6E-10 64.5 7.6 112 68-217 70-181 (213)
96 3reg_A RHO-like small GTPase; 98.0 1E-05 3.6E-10 65.3 6.1 111 69-216 73-186 (194)
97 1m2o_B GTP-binding protein SAR 98.0 3.6E-05 1.2E-09 62.4 9.3 117 68-215 68-189 (190)
98 3mca_A HBS1, elongation factor 98.0 3.2E-06 1.1E-10 81.9 3.5 115 67-217 255-396 (592)
99 3tw8_B RAS-related protein RAB 98.0 3.9E-05 1.3E-09 60.2 9.3 109 68-216 59-169 (181)
100 1g7s_A Translation initiation 98.0 4.3E-05 1.5E-09 74.1 11.3 128 68-217 71-217 (594)
101 2ew1_A RAS-related protein RAB 98.0 4.6E-05 1.6E-09 62.8 10.0 110 68-216 76-187 (201)
102 3o47_A ADP-ribosylation factor 98.0 2.9E-05 9.8E-10 69.5 9.3 115 68-216 210-325 (329)
103 1f60_A Elongation factor EEF1A 98.0 1.6E-05 5.5E-10 74.4 7.9 106 67-206 85-200 (458)
104 2gf9_A RAS-related protein RAB 98.0 3.7E-05 1.3E-09 61.7 9.1 110 68-216 72-183 (189)
105 2bov_A RAla, RAS-related prote 97.9 7.1E-05 2.4E-09 60.4 10.8 110 68-216 63-175 (206)
106 2a5j_A RAS-related protein RAB 97.9 4E-05 1.4E-09 61.7 9.2 109 68-215 71-181 (191)
107 2oil_A CATX-8, RAS-related pro 97.9 2.7E-05 9.3E-10 62.6 8.1 110 68-216 75-186 (193)
108 1f6b_A SAR1; gtpases, N-termin 97.9 8.9E-05 3E-09 60.5 11.3 121 68-216 70-197 (198)
109 3gee_A MNME, tRNA modification 97.9 2.6E-05 8.9E-10 73.7 9.0 143 38-217 242-397 (476)
110 2nzj_A GTP-binding protein REM 97.9 5.8E-05 2E-09 59.1 9.7 112 68-216 53-167 (175)
111 2bcg_Y Protein YP2, GTP-bindin 97.9 2E-05 6.9E-10 64.2 7.2 110 68-216 58-169 (206)
112 2aka_B Dynamin-1; fusion prote 97.9 1.6E-05 5.3E-10 68.8 6.9 122 67-218 125-253 (299)
113 1zbd_A Rabphilin-3A; G protein 97.9 4.8E-05 1.6E-09 61.6 9.4 110 68-216 58-169 (203)
114 3oes_A GTPase rhebl1; small GT 97.9 3.2E-05 1.1E-09 62.9 8.1 111 69-218 74-187 (201)
115 2iwr_A Centaurin gamma 1; ANK 97.9 6.3E-05 2.1E-09 59.4 9.5 106 69-215 56-166 (178)
116 3llu_A RAS-related GTP-binding 97.9 0.00019 6.6E-09 58.1 12.7 123 68-214 70-193 (196)
117 2xtp_A GTPase IMAP family memb 97.9 2.3E-05 7.9E-10 66.8 7.4 129 68-218 72-208 (260)
118 2gf0_A GTP-binding protein DI- 97.9 0.0001 3.6E-09 59.0 10.8 111 68-218 57-171 (199)
119 1m7b_A RND3/RHOE small GTP-bin 97.9 6.6E-05 2.3E-09 60.1 9.5 121 68-215 56-180 (184)
120 1z06_A RAS-related protein RAB 97.9 5.4E-05 1.9E-09 60.7 9.0 112 68-216 70-186 (189)
121 1x3s_A RAS-related protein RAB 97.9 3.6E-05 1.2E-09 61.5 7.9 112 68-219 65-179 (195)
122 2p5s_A RAS and EF-hand domain 97.9 0.00012 4.1E-09 59.4 11.1 118 68-216 78-195 (199)
123 3avx_A Elongation factor TS, e 97.9 5.9E-05 2E-09 78.3 11.2 114 67-217 359-485 (1289)
124 3th5_A RAS-related C3 botulinu 97.1 1.8E-06 6.1E-11 70.6 0.0 123 69-215 80-202 (204)
125 3qq5_A Small GTP-binding prote 97.9 2.5E-05 8.7E-10 72.8 7.8 113 68-219 84-197 (423)
126 3ihw_A Centg3; RAS, centaurin, 97.9 7.5E-05 2.6E-09 60.3 9.4 107 69-216 69-178 (184)
127 2yc2_C IFT27, small RAB-relate 97.9 3E-05 1E-09 62.6 7.0 110 68-216 74-190 (208)
128 2o52_A RAS-related protein RAB 97.8 6.6E-05 2.2E-09 61.2 8.8 110 68-216 75-186 (200)
129 2f7s_A C25KG, RAS-related prot 97.8 4.5E-05 1.5E-09 62.5 7.7 110 68-216 85-197 (217)
130 3l0i_B RAS-related protein RAB 97.8 1.1E-05 3.7E-10 65.7 3.7 110 68-216 83-194 (199)
131 1gwn_A RHO-related GTP-binding 97.8 2.5E-05 8.7E-10 64.5 6.0 121 68-215 77-201 (205)
132 1r5b_A Eukaryotic peptide chai 97.8 3E-05 1E-09 72.7 7.2 107 67-207 121-241 (467)
133 2hxs_A RAB-26, RAS-related pro 97.8 0.00013 4.4E-09 57.3 9.8 110 68-216 57-171 (178)
134 2e87_A Hypothetical protein PH 97.8 0.00012 4E-09 66.0 10.7 116 69-217 216-335 (357)
135 2wkq_A NPH1-1, RAS-related C3 97.8 2.5E-05 8.6E-10 68.0 5.9 120 70-216 206-328 (332)
136 2hjg_A GTP-binding protein ENG 97.8 0.00011 3.7E-09 68.1 10.4 142 38-218 12-165 (436)
137 1mky_A Probable GTP-binding pr 97.8 0.00019 6.6E-09 66.4 11.9 121 67-217 228-354 (439)
138 2bme_A RAB4A, RAS-related prot 97.8 0.00015 5.1E-09 57.5 9.7 110 68-216 60-171 (186)
139 3c5c_A RAS-like protein 12; GD 97.8 0.00031 1E-08 56.5 11.6 108 69-216 71-184 (187)
140 3cpj_B GTP-binding protein YPT 97.8 6.5E-05 2.2E-09 62.3 7.7 110 68-216 63-174 (223)
141 3dz8_A RAS-related protein RAB 97.7 8.7E-05 3E-09 59.7 8.1 110 68-216 73-184 (191)
142 1pui_A ENGB, probable GTP-bind 97.7 0.0012 4E-08 53.5 15.0 123 68-219 73-200 (210)
143 1jny_A EF-1-alpha, elongation 97.7 4.6E-05 1.6E-09 70.7 7.3 110 67-206 84-201 (435)
144 3r7w_A Gtpase1, GTP-binding pr 97.7 0.00014 4.9E-09 64.2 10.0 124 68-217 53-181 (307)
145 3q3j_B RHO-related GTP-binding 97.7 4.6E-05 1.6E-09 63.1 6.3 123 68-217 76-202 (214)
146 3cb4_D GTP-binding protein LEP 97.7 0.0004 1.4E-08 67.4 13.3 110 69-218 73-182 (599)
147 3gj0_A GTP-binding nuclear pro 97.7 0.00012 4.2E-09 60.3 8.1 110 68-219 65-176 (221)
148 3tr5_A RF-3, peptide chain rel 97.6 0.00065 2.2E-08 64.9 13.8 67 68-148 83-149 (528)
149 2p67_A LAO/AO transport system 97.6 0.0003 1E-08 63.1 10.9 110 66-217 148-260 (341)
150 3lxw_A GTPase IMAP family memb 97.6 0.00012 4.1E-09 62.6 7.7 129 67-217 70-207 (247)
151 2ywe_A GTP-binding protein LEP 97.6 0.00048 1.6E-08 66.9 12.5 108 69-218 75-184 (600)
152 3geh_A MNME, tRNA modification 97.6 0.00047 1.6E-08 64.8 11.9 139 38-220 233-386 (462)
153 3lvq_E ARF-GAP with SH3 domain 97.6 0.00015 5.2E-09 67.7 8.4 142 38-218 331-484 (497)
154 1xzp_A Probable tRNA modificat 97.6 0.00033 1.1E-08 66.2 10.7 110 68-217 292-404 (482)
155 1mky_A Probable GTP-binding pr 97.6 0.00029 9.9E-09 65.2 10.2 143 38-217 10-165 (439)
156 1dar_A EF-G, elongation factor 97.6 0.0013 4.4E-08 64.7 14.9 43 178-220 242-284 (691)
157 1jwy_B Dynamin A GTPase domain 97.5 0.00014 4.8E-09 63.4 7.0 74 67-149 131-214 (315)
158 1nrj_B SR-beta, signal recogni 97.5 0.002 7E-08 52.5 13.2 78 67-149 55-136 (218)
159 3cbq_A GTP-binding protein REM 97.5 0.00078 2.7E-08 54.8 10.3 111 69-217 74-187 (195)
160 2wsm_A Hydrogenase expression/ 97.4 0.00036 1.2E-08 57.3 7.8 117 55-218 97-214 (221)
161 2x2e_A Dynamin-1; nitration, h 97.4 0.00013 4.3E-09 65.7 5.4 120 67-215 130-255 (353)
162 2qtf_A Protein HFLX, GTP-bindi 97.4 0.0016 5.4E-08 59.2 12.7 156 36-218 185-354 (364)
163 2rdo_7 EF-G, elongation factor 97.4 0.0035 1.2E-07 61.7 15.0 68 67-148 82-149 (704)
164 2xex_A Elongation factor G; GT 97.4 0.0025 8.4E-08 62.7 13.9 43 178-220 240-282 (693)
165 3zvr_A Dynamin-1; hydrolase, D 97.4 0.00016 5.5E-09 72.1 5.4 120 67-215 150-275 (772)
166 3def_A T7I23.11 protein; chlor 97.3 0.00063 2.2E-08 58.3 8.0 77 68-148 85-166 (262)
167 1udx_A The GTP-binding protein 97.3 0.0019 6.5E-08 60.0 11.2 119 67-219 205-326 (416)
168 2qag_A Septin-2, protein NEDD5 97.2 0.00044 1.5E-08 62.7 6.6 86 102-218 148-237 (361)
169 3izy_P Translation initiation 97.2 0.00019 6.4E-09 68.9 4.3 115 68-218 53-168 (537)
170 3dpu_A RAB family protein; roc 97.2 0.00027 9.1E-09 67.0 5.0 111 67-218 98-208 (535)
171 2j69_A Bacterial dynamin-like 97.2 0.0018 6.2E-08 63.7 10.8 128 67-216 174-323 (695)
172 2h5e_A Peptide chain release f 97.2 0.0015 5.3E-08 62.2 9.9 68 67-148 82-149 (529)
173 2dy1_A Elongation factor G; tr 97.1 0.0088 3E-07 58.4 15.1 65 68-146 75-139 (665)
174 4dcu_A GTP-binding protein ENG 97.1 0.0015 5.1E-08 60.7 9.1 140 38-217 32-184 (456)
175 2ged_A SR-beta, signal recogni 97.1 0.0016 5.6E-08 51.8 8.1 76 67-149 91-172 (193)
176 1h65_A Chloroplast outer envel 97.1 0.0017 5.7E-08 55.8 8.4 78 68-149 88-170 (270)
177 2zej_A Dardarin, leucine-rich 97.1 0.0033 1.1E-07 50.2 9.5 113 68-216 57-176 (184)
178 4dkx_A RAS-related protein RAB 97.0 0.0037 1.3E-07 52.4 9.7 111 69-218 64-176 (216)
179 2www_A Methylmalonic aciduria 97.0 0.0037 1.3E-07 56.2 10.3 111 66-217 166-278 (349)
180 3t34_A Dynamin-related protein 97.0 0.00091 3.1E-08 60.0 5.9 78 67-149 136-219 (360)
181 1zo1_I IF2, translation initia 97.0 0.00028 9.5E-09 67.2 2.6 111 67-214 51-163 (501)
182 1puj_A YLQF, conserved hypothe 96.9 0.0017 5.8E-08 56.9 7.2 100 73-217 5-105 (282)
183 2g3y_A GTP-binding protein GEM 96.9 0.005 1.7E-07 51.3 9.5 110 69-216 89-201 (211)
184 3j25_A Tetracycline resistance 96.7 0.0041 1.4E-07 60.5 8.1 138 67-218 67-239 (638)
185 2qpt_A EH domain-containing pr 96.5 0.0038 1.3E-07 59.8 7.0 75 68-149 155-234 (550)
186 3vqt_A RF-3, peptide chain rel 96.5 0.047 1.6E-06 52.1 14.5 67 68-148 101-167 (548)
187 2qm8_A GTPase/ATPase; G protei 96.4 0.0094 3.2E-07 53.4 8.4 111 66-217 147-260 (337)
188 4fn5_A EF-G 1, elongation fact 96.3 0.06 2E-06 52.9 14.3 64 70-147 88-151 (709)
189 1zcb_A G alpha I/13; GTP-bindi 96.3 0.005 1.7E-07 56.0 6.1 129 68-215 202-350 (362)
190 3h2y_A GTPase family protein; 96.3 0.014 4.9E-07 52.8 8.9 100 84-215 56-157 (368)
191 2hf9_A Probable hydrogenase ni 96.2 0.0063 2.2E-07 49.9 5.8 103 66-216 118-222 (226)
192 3ec1_A YQEH GTPase; atnos1, at 96.2 0.012 3.9E-07 53.4 7.9 101 84-216 58-160 (369)
193 2cjw_A GTP-binding protein GEM 96.2 0.051 1.8E-06 43.6 10.9 110 69-216 58-170 (192)
194 3r7w_B Gtpase2, GTP-binding pr 96.0 0.065 2.2E-06 48.3 11.7 118 68-214 47-170 (331)
195 1wxq_A GTP-binding protein; st 96.0 0.0022 7.7E-08 58.9 2.0 35 192-226 244-279 (397)
196 2yv5_A YJEQ protein; hydrolase 95.9 0.044 1.5E-06 48.1 9.8 86 98-214 79-165 (302)
197 2f9l_A RAB11B, member RAS onco 95.8 0.046 1.6E-06 43.8 9.1 111 69-216 56-166 (199)
198 3c5h_A Glucocorticoid receptor 95.8 0.076 2.6E-06 45.0 10.7 87 101-216 164-253 (255)
199 2qnr_A Septin-2, protein NEDD5 95.4 0.08 2.7E-06 46.4 9.8 82 102-215 129-211 (301)
200 4fid_A G protein alpha subunit 95.2 0.055 1.9E-06 48.8 8.1 25 191-215 301-325 (340)
201 1n0u_A EF-2, elongation factor 95.1 0.031 1.1E-06 56.1 6.8 66 68-147 99-164 (842)
202 1u0l_A Probable GTPase ENGC; p 95.0 0.13 4.5E-06 44.9 9.9 86 98-214 84-169 (301)
203 2qag_C Septin-7; cell cycle, c 94.7 0.069 2.4E-06 49.4 7.5 87 102-219 141-228 (418)
204 1cip_A Protein (guanine nucleo 94.7 0.044 1.5E-06 49.5 6.0 131 68-215 194-341 (353)
205 3cnl_A YLQF, putative uncharac 94.6 0.021 7.2E-07 49.3 3.5 94 74-215 4-98 (262)
206 1oix_A RAS-related protein RAB 94.3 0.22 7.5E-06 39.7 8.8 109 70-215 81-189 (191)
207 2v3c_C SRP54, signal recogniti 93.5 0.26 9E-06 45.6 8.8 70 66-149 180-254 (432)
208 2j37_W Signal recognition part 92.5 0.16 5.3E-06 48.2 5.7 73 66-149 183-256 (504)
209 2xtz_A Guanine nucleotide-bind 92.2 0.44 1.5E-05 43.0 8.2 24 192-215 319-342 (354)
210 1azs_C GS-alpha; complex (lyas 92.0 0.26 9E-06 45.3 6.6 25 191-215 358-382 (402)
211 3ohm_A Guanine nucleotide-bind 91.9 0.34 1.2E-05 43.3 7.0 128 68-215 168-315 (327)
212 1j8m_F SRP54, signal recogniti 91.8 0.35 1.2E-05 42.4 6.8 73 66-148 180-254 (297)
213 4a9a_A Ribosome-interacting GT 91.1 0.28 9.4E-06 44.8 5.6 97 38-145 81-194 (376)
214 2xxa_A Signal recognition part 91.0 0.5 1.7E-05 43.7 7.4 73 66-148 183-255 (433)
215 1t9h_A YLOQ, probable GTPase E 89.7 0.35 1.2E-05 42.8 4.9 74 67-149 54-133 (307)
216 2rcn_A Probable GTPase ENGC; Y 89.4 1.7 5.8E-05 39.3 9.2 56 131-212 158-213 (358)
217 3ug7_A Arsenical pump-driving 88.8 12 0.00041 33.0 16.6 74 126-217 258-334 (349)
218 3dm5_A SRP54, signal recogniti 87.6 2.7 9.4E-05 39.1 9.6 70 66-149 182-255 (443)
219 2ffh_A Protein (FFH); SRP54, s 85.9 1.6 5.6E-05 40.3 7.1 73 66-148 180-252 (425)
220 3kl4_A SRP54, signal recogniti 85.8 1.8 6.1E-05 40.1 7.3 76 66-149 179-254 (433)
221 3sop_A Neuronal-specific septi 84.5 1.1 3.8E-05 38.5 4.9 43 101-149 113-156 (270)
222 1tq4_A IIGP1, interferon-induc 81.2 9.2 0.00031 35.0 10.0 162 36-220 75-255 (413)
223 1ls1_A Signal recognition part 80.3 3.2 0.00011 36.0 6.3 72 66-148 180-252 (295)
224 1byi_A Dethiobiotin synthase; 79.6 20 0.00068 28.5 10.7 70 66-145 108-179 (224)
225 3h2y_A GTPase family protein; 78.4 0.33 1.1E-05 43.8 -0.7 105 38-149 169-289 (368)
226 4dzz_A Plasmid partitioning pr 77.8 12 0.00041 29.2 8.6 64 66-146 75-143 (206)
227 2dby_A GTP-binding protein; GD 75.5 4.3 0.00015 36.6 5.9 42 67-111 69-111 (368)
228 2woo_A ATPase GET3; tail-ancho 75.0 41 0.0014 29.1 14.0 36 181-216 281-318 (329)
229 3ec1_A YQEH GTPase; atnos1, at 73.3 0.31 1E-05 44.0 -2.4 105 38-149 171-290 (369)
230 2ph1_A Nucleotide-binding prot 71.3 39 0.0014 27.8 10.6 66 66-145 128-194 (262)
231 1wcv_1 SOJ, segregation protei 70.3 19 0.00063 29.7 8.3 23 56-79 102-124 (257)
232 2qag_B Septin-6, protein NEDD5 68.8 4.9 0.00017 37.2 4.7 43 101-149 150-192 (427)
233 1g3q_A MIND ATPase, cell divis 63.9 2.6 8.9E-05 34.2 1.6 14 66-79 111-124 (237)
234 1hyq_A MIND, cell division inh 63.7 4 0.00014 33.7 2.8 13 66-78 110-122 (263)
235 1vma_A Cell division protein F 63.5 20 0.00068 31.2 7.4 74 66-149 186-265 (306)
236 3szr_A Interferon-induced GTP- 63.5 21 0.00072 34.1 8.1 77 67-148 147-229 (608)
237 1jal_A YCHF protein; nucleotid 63.5 3.3 0.00011 37.4 2.3 41 67-111 66-108 (363)
238 1o9i_A Pseudocatalase; oxidore 63.5 3.8 0.00013 35.7 2.6 41 12-53 7-47 (266)
239 2oze_A ORF delta'; para, walke 63.4 16 0.00056 30.6 6.7 69 66-146 154-225 (298)
240 3la6_A Tyrosine-protein kinase 63.1 12 0.0004 32.2 5.8 88 38-147 180-268 (286)
241 3k9g_A PF-32 protein; ssgcid, 60.5 19 0.00064 29.7 6.4 14 66-79 144-157 (267)
242 3q9l_A Septum site-determining 59.6 1.1 3.7E-05 37.0 -1.5 14 66-79 113-126 (260)
243 2v8t_A Manganese-containing ps 55.9 4 0.00014 36.2 1.4 41 12-53 7-48 (302)
244 3ea0_A ATPase, para family; al 55.4 5 0.00017 32.6 1.9 13 66-78 118-130 (245)
245 1ym3_A Carbonic anhydrase (car 52.7 24 0.00081 29.3 5.7 26 34-59 6-31 (215)
246 2ohf_A Protein OLA1, GTP-bindi 52.5 11 0.00038 34.4 3.9 40 67-110 86-127 (396)
247 3bfv_A CAPA1, CAPB2, membrane 44.0 19 0.00065 30.5 3.8 65 67-146 192-257 (271)
248 1ihu_A Arsenical pump-driving 43.5 1.4E+02 0.0047 27.8 10.1 22 192-213 272-293 (589)
249 3cio_A ETK, tyrosine-protein k 43.1 20 0.00067 30.8 3.8 64 67-146 214-279 (299)
250 3ez9_A Para; DNA binding, wing 42.3 18 0.00062 32.1 3.6 14 66-79 247-260 (403)
251 3kjh_A CO dehydrogenase/acetyl 39.8 16 0.00054 29.3 2.5 63 66-144 131-194 (254)
252 3zq6_A Putative arsenical pump 37.5 1.9E+02 0.0066 24.6 15.9 75 125-217 242-319 (324)
253 1zu4_A FTSY; GTPase, signal re 36.4 21 0.00073 31.2 3.0 13 66-78 191-203 (320)
254 3of5_A Dethiobiotin synthetase 34.8 1.8E+02 0.0062 23.6 8.4 69 66-144 110-180 (228)
255 2yhs_A FTSY, cell division pro 34.3 1.1E+02 0.0038 28.7 7.7 76 66-148 375-453 (503)
256 1cp2_A CP2, nitrogenase iron p 33.3 20 0.00067 29.5 2.1 19 60-78 108-127 (269)
257 2px0_A Flagellar biosynthesis 32.5 58 0.002 27.9 5.1 43 66-111 182-224 (296)
258 3goc_A Endonuclease V; alpha-b 32.2 58 0.002 27.7 4.9 54 85-143 92-145 (237)
259 2afh_E Nitrogenase iron protei 31.0 22 0.00074 29.8 2.1 13 66-78 118-130 (289)
260 2w36_A Endonuclease V; hypoxan 31.0 48 0.0016 27.9 4.2 52 86-142 89-140 (225)
261 2xj4_A MIPZ; replication, cell 30.4 34 0.0012 28.7 3.2 12 67-78 104-115 (286)
262 1ihu_A Arsenical pump-driving 29.7 3.4E+02 0.012 25.1 12.0 31 182-212 551-582 (589)
263 3ez2_A Plasmid partition prote 29.3 40 0.0014 29.8 3.6 14 66-79 244-257 (398)
264 3ga2_A Endonuclease V; alpha-b 26.9 62 0.0021 27.6 4.2 52 86-142 95-146 (246)
265 4a1f_A DNAB helicase, replicat 24.3 1.6E+02 0.0056 25.8 6.7 71 67-143 128-208 (338)
266 3cwq_A Para family chromosome 24.0 23 0.00078 28.4 0.9 15 133-147 120-134 (209)
267 3fkq_A NTRC-like two-domain pr 23.8 53 0.0018 28.8 3.3 25 55-79 248-272 (373)
268 3qel_B Glutamate [NMDA] recept 23.7 3.5E+02 0.012 23.2 11.3 72 131-216 88-160 (364)
269 3pg5_A Uncharacterized protein 22.8 49 0.0017 29.0 2.9 14 66-79 153-166 (361)
270 3end_A Light-independent proto 20.9 34 0.0012 28.8 1.4 14 66-79 156-169 (307)
No 1
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.92 E-value=2.9e-24 Score=184.85 Aligned_cols=213 Identities=20% Similarity=0.367 Sum_probs=166.7
Q ss_pred CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccC-CCCEEEEeCCCcee
Q 026576 1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYL-DDDYLVFDCPGQIE 79 (236)
Q Consensus 1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~-~~~Yil~D~PGQiE 79 (236)
|.+|++||+....+|.+.+|++++++.+++|++ ++||||+++.|++++..+. +|+.+.++... +.+|+|+|||||.+
T Consensus 44 v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~d~iiiDtpG~~~ 121 (262)
T 1yrb_A 44 VAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRLMEKF-NEYLNKILRLEKENDYVLIDTPGQME 121 (262)
T ss_dssp EEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHCSEEEEECCSSHH
T ss_pred EEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecHHHHhhhH-HHHHHHHHHHhhcCCEEEEeCCCccc
Confidence 478999999999999999999999999999998 9999999999998887777 88877776541 23899999999999
Q ss_pred eeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchh--Hhhhhcc
Q 026576 80 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKK--EIEDYLN 157 (236)
Q Consensus 80 lf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~--~l~~~l~ 157 (236)
.++++..++.+.+.+ .+ .++|+++|+....++..+.+..........+.+.|.+.|+||+|+.+... ++.+++.
T Consensus 122 ~~~~~~l~~~~~~~~--~~--~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~ 197 (262)
T 1yrb_A 122 TFLFHEFGVRLMENL--PY--PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFE 197 (262)
T ss_dssp HHHHSHHHHHHHHTS--SS--CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHH--hh--ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHh
Confidence 887766566666555 23 57999999998888988887665555556677999999999999986531 2233332
Q ss_pred ccHHHHHHHhhh-cchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhcccccC
Q 026576 158 PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQWGEDA 222 (236)
Q Consensus 158 ~~~~~l~~~l~~-~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y~ed~ 222 (236)
+...+...+.. +..++|.++ ++++++++++. ..++|+|+++++++++|+..|.+.+++|+|+
T Consensus 198 -~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~~~ 261 (262)
T 1yrb_A 198 -DIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCGDL 261 (262)
T ss_dssp -CHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred -ChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccccCC
Confidence 33333333321 233566665 78888888886 5999999999999999999999999999885
No 2
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.74 E-value=6e-08 Score=86.22 Aligned_cols=156 Identities=14% Similarity=0.194 Sum_probs=93.1
Q ss_pred ChHHHHHHHHHHHHh-hHHHHHHHhcc----------cC-CCCEEEEeCCCceeeeeccchHHHHHHHHhh--CCCceEE
Q 026576 38 PNGGLIYCMEHLEDN-LDDWLAEELDN----------YL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKS--RNFNVCA 103 (236)
Q Consensus 38 PNGalv~~me~l~~n-~~~wl~~~i~~----------~~-~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~--~~~~~~~ 103 (236)
||.|.-+-++.|... + .......+. .. ..+++++|||||.+...++.....+...... .+.. ++
T Consensus 19 ~nvGKSTLin~l~g~~~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD-~i 96 (308)
T 3iev_A 19 PNVGKSTLLNNLLGTKV-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEAD-VI 96 (308)
T ss_dssp TTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCS-EE
T ss_pred CCCcHHHHHHHHhCCCc-cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCC-EE
Confidence 788888888877642 2 111111111 11 2358999999998754334344444333221 1334 68
Q ss_pred EEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026576 104 VYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI 183 (236)
Q Consensus 104 V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~ 183 (236)
++++|+..-..+...- .+ +..+.+.+.|.+.|+||+|+.+....+...+.
T Consensus 97 l~VvD~~~~~~~~~~~-~~---~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~-------------------------- 146 (308)
T 3iev_A 97 LFMIDATEGWRPRDEE-IY---QNFIKPLNKPVIVVINKIDKIGPAKNVLPLID-------------------------- 146 (308)
T ss_dssp EEEEETTTBSCHHHHH-HH---HHHTGGGCCCEEEEEECGGGSSSGGGGHHHHH--------------------------
T ss_pred EEEEeCCCCCCchhHH-HH---HHHHHhcCCCEEEEEECccCCCCHHHHHHHHH--------------------------
Confidence 9999997544443321 11 22333468999999999999833212221111
Q ss_pred HHhhcc-CCeeEEEeeccCcccHHHHHHHHHHhhcccccCCCC
Q 026576 184 ELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 225 (236)
Q Consensus 184 ~li~d~-~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~~~ 225 (236)
++-+.+ ....++|+|+.+++++++|+..|.+.+..++..-|.
T Consensus 147 ~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~ 189 (308)
T 3iev_A 147 EIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPE 189 (308)
T ss_dssp HHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCT
T ss_pred HHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCc
Confidence 111233 347899999999999999999999998776544443
No 3
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.66 E-value=8.6e-07 Score=73.18 Aligned_cols=127 Identities=14% Similarity=0.089 Sum_probs=72.0
Q ss_pred CCEEEEeCCCceeeeecc---chHHHHH-HHHhhCCCceEEEEeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEec
Q 026576 67 DDYLVFDCPGQIELFTHV---PVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILS 141 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~---~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVls 141 (236)
..+.|+||||..+--... ...+.++ ..+.....--++++++|+..-.... ..+ +..+.+.+.|.+.|+|
T Consensus 79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~------~~~l~~~~~p~i~v~n 152 (223)
T 4dhe_A 79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRM------IEWFAPTGKPIHSLLT 152 (223)
T ss_dssp CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHH------HHHHGGGCCCEEEEEE
T ss_pred CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHH------HHHHHhcCCCEEEEEe
Confidence 478999999954321111 1112222 2333222223589999986532222 211 2233347899999999
Q ss_pred ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHh--hccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026576 142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV--DEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li--~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
|+|+.+.. +...... ++.+.+.... .......++++|+++++++.+++..|.+.+...
T Consensus 153 K~Dl~~~~-~~~~~~~-------------------~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 153 KCDKLTRQ-ESINALR-------------------ATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CGGGSCHH-HHHHHHH-------------------HHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ccccCChh-hHHHHHH-------------------HHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 99998654 2221111 1111111110 112458999999999999999999999887643
No 4
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.57 E-value=4.5e-07 Score=70.42 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=69.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.++.++|||||.+........+......- .+.. ++++++|+.. .+.....+..+ ..+.+.|.+.|.||+|+
T Consensus 49 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~-~~i~v~d~~~~~~~~~~~~~~~------~~~~~~p~ilv~nK~Dl 120 (161)
T 2dyk_A 49 GRFLLVDTGGLWSGDKWEKKIQEKVDRAL-EDAE-VVLFAVDGRAELTQADYEVAEY------LRRKGKPVILVATKVDD 120 (161)
T ss_dssp EEEEEEECGGGCSSSSCCHHHHHHHHHHT-TTCS-EEEEEEESSSCCCHHHHHHHHH------HHHHTCCEEEEEECCCS
T ss_pred ceEEEEECCCCCCccchHHHHHHHHHHHH-HhCC-EEEEEEECCCcccHhHHHHHHH------HHhcCCCEEEEEECccc
Confidence 35789999999874432222333222221 2333 6889999865 33333333222 22368999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+...+.. ++. .++...|+++|+++++++++++..+-+.+
T Consensus 121 ~~~~~~~~------------------------------~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 121 PKHELYLG------------------------------PLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp GGGGGGCG------------------------------GGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ccchHhHH------------------------------HHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 65421111 111 34545799999999999999999987754
No 5
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.54 E-value=2.5e-06 Score=68.18 Aligned_cols=121 Identities=20% Similarity=0.258 Sum_probs=71.6
Q ss_pred CCEEEEeCCCceeeeec----cchHHHHHHHH-hhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEec
Q 026576 67 DDYLVFDCPGQIELFTH----VPVLRNFVDHL-KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 141 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~----~~~~~~iv~~L-~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVls 141 (236)
.++.++||||... ..+ +...+.+.... +....--++++++|+......... . + ...+...+.|.+.|+|
T Consensus 68 ~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~--~--~~~~~~~~~p~i~v~n 141 (195)
T 3pqc_A 68 SKYYFVDLPGYGY-AKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-M--M--VEWMKSLNIPFTIVLT 141 (195)
T ss_dssp TTEEEEECCCBSS-SCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H--H--HHHHHHTTCCEEEEEE
T ss_pred CcEEEEECCCCcc-ccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHH-H--H--HHHHHHcCCCEEEEEE
Confidence 4689999999221 111 11122222222 222222468899997643222221 1 1 2223345899999999
Q ss_pred ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
|+|+.+.. +... ..+.+.+....++...++++|+++++++++++..|.+.+.
T Consensus 142 K~Dl~~~~-~~~~-----------------------~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 142 KMDKVKMS-ERAK-----------------------KLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CGGGSCGG-GHHH-----------------------HHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ChhcCChH-HHHH-----------------------HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 99997543 2211 1112223445556689999999999999999999987653
No 6
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.47 E-value=1.9e-07 Score=81.57 Aligned_cols=116 Identities=18% Similarity=0.263 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCceeeeecc---chHHHHHHHH-hhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEec
Q 026576 66 DDDYLVFDCPGQIELFTHV---PVLRNFVDHL-KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 141 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~---~~~~~iv~~L-~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVls 141 (236)
...+.++|||||-++.+.+ .....+.+.. ...+.. ++++++|+... .... .-+..+..++.|.|.|+|
T Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d-~ii~VvD~~~~---~~~~----~~~~~l~~~~~p~ivv~N 120 (274)
T 3i8s_A 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD-LLINVVDASNL---ERNL----YLTLQLLELGIPCIVALN 120 (274)
T ss_dssp SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCS-EEEEEEEGGGH---HHHH----HHHHHHHHHTCCEEEEEE
T ss_pred CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCC-EEEEEecCCCh---HHHH----HHHHHHHhcCCCEEEEEE
Confidence 3468999999987755321 1122222222 123444 68999998752 2222 223334457999999999
Q ss_pred ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
|+|+.+.. .+.. +. .++. + .++ ..++|+|+.++++++.|+..|.+.+.
T Consensus 121 K~Dl~~~~-~~~~----~~---------------~~l~----~---~lg-~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 121 MLDIAEKQ-NIRI----EI---------------DALS----A---RLG-CPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp CHHHHHHT-TEEE----CH---------------HHHH----H---HHT-SCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred Cccchhhh-hHHH----HH---------------HHHH----H---hcC-CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 99996533 1110 11 1111 1 112 57999999999999999999988765
No 7
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.46 E-value=3.1e-07 Score=79.66 Aligned_cols=113 Identities=19% Similarity=0.369 Sum_probs=69.4
Q ss_pred CCEEEEeCCCceeeeeccc--hHH-HHHHH-HhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026576 67 DDYLVFDCPGQIELFTHVP--VLR-NFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~--~~~-~iv~~-L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
..+.|+|||||-.+..+.. +.. .+.+. +...+.. ++++++|+.. +.... .-+..+..++.|.|.|+||
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d-~vi~VvDas~---~~~~~----~l~~~l~~~~~pvilv~NK 119 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYD-CIINVIDACH---LERHL----YLTSQLFELGKPVVVALNM 119 (256)
T ss_dssp EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCS-EEEEEEEGGG---HHHHH----HHHHHHTTSCSCEEEEEEC
T ss_pred eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCC-EEEEEeeCCC---chhHH----HHHHHHHHcCCCEEEEEEC
Confidence 3578999999866543210 222 22222 2223444 6899999875 23222 1233445679999999999
Q ss_pred cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026576 143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+|+.+.. .... +. .++.+ .+ + +.++|+|+.+++++++|+..|-+.
T Consensus 120 ~Dl~~~~-~~~~----~~---------------~~l~~----~l---g-~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 120 MDIAEHR-GISI----DT---------------EKLES----LL---G-CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHHHHHT-TCEE----CH---------------HHHHH----HH---C-SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred hhcCCcC-CcHH----HH---------------HHHHH----Hc---C-CCEEEEECCCCCCHHHHHHHHHhh
Confidence 9997543 1110 11 11111 11 2 589999999999999999999886
No 8
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.45 E-value=2.3e-07 Score=84.27 Aligned_cols=119 Identities=19% Similarity=0.284 Sum_probs=79.4
Q ss_pred CCEEEEeCCCceee-eeccchHHHHHHHHhhCCCceEEEEeecCCCc--cchhhHHHHHHHHHHHHh--hcCCCEEEEec
Q 026576 67 DDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILS 141 (236)
Q Consensus 67 ~~Yil~D~PGQiEl-f~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~--~dp~~~is~~l~sls~m~--~l~lP~InVls 141 (236)
..+.|+|||||+|- -.++.....+++.+++. + ++++++|+... .+|-.-+..++..+.... ..+.|.+.|+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~--d-~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N 282 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT--R-VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 282 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC--C-EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhc--c-EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 46899999999883 23444556677777543 3 68999998764 455444444443343322 14899999999
Q ss_pred ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
|+|+......++ ++.+.+.. ..++++|+.+++++++|+..|.+.+.-
T Consensus 283 K~Dl~~~~e~~~------------------------------~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 283 KMDMPEAAENLE------------------------------AFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CTTSTTHHHHHH------------------------------HHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CccCCCCHHHHH------------------------------HHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 999974321110 11111221 678999999999999999999998754
No 9
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.45 E-value=8.1e-07 Score=83.92 Aligned_cols=112 Identities=13% Similarity=0.221 Sum_probs=71.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.|+|||||-. ..+.....+. +.. ++++++|+..-..+...-.. .....+++|+|.|+||+|+..
T Consensus 74 ~i~iiDtPGh~~------~~~~~~~~~~--~aD-~~ilVvda~~g~~~qt~e~l-----~~~~~~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 74 RITLVDAPGHAD------LIRAVVSAAD--IID-LALIVVDAKEGPKTQTGEHM-----LILDHFNIPIIVVITKSDNAG 139 (482)
T ss_dssp EEEECCCSSHHH------HHHHHHHHTT--SCC-EEEEEEETTTCSCHHHHHHH-----HHHHHTTCCBCEEEECTTSSC
T ss_pred EEEEEECCChHH------HHHHHHHHHh--hCC-EEEEEEecCCCccHHHHHHH-----HHHHHcCCCEEEEEECCCccc
Confidence 689999999732 2334444442 344 68999998753334433221 123347999999999999975
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc---CCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY---SMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~---~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.. .++. ....+.+++..+ .-..++|+|+.+++++..|+..|.+.++
T Consensus 140 ~~-~~~~-----------------------~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 140 TE-EIKR-----------------------TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HH-HHHH-----------------------HHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ch-hHHH-----------------------HHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 32 1211 111122233333 2378999999999999999999999765
No 10
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.41 E-value=3.7e-06 Score=77.20 Aligned_cols=114 Identities=12% Similarity=0.183 Sum_probs=72.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCC-CEEEEecccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLEL-PHVNILSKMD 144 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~l-P~InVlsK~D 144 (236)
..+.++||||| ....+.....+. +.. ++++++|+..-. .+...- . +.....++. |.|.|+||+|
T Consensus 75 ~~~~iiDtPGh------~~~~~~~~~~~~--~~D-~~ilVvda~~~~~~~qt~~--~---~~~~~~~~~~~iivviNK~D 140 (403)
T 3sjy_A 75 RRISFIDAPGH------EVLMATMLSGAA--LMD-GAILVVAANEPFPQPQTRE--H---FVALGIIGVKNLIIVQNKVD 140 (403)
T ss_dssp EEEEEEECCCC------GGGHHHHHHHHT--TCS-EEEEEEETTSCSSCHHHHH--H---HHHHHHHTCCCEEEEEECGG
T ss_pred ceEEEEECCCc------HHHHHHHHHHHh--hCC-EEEEEEECCCCCCcHHHHH--H---HHHHHHcCCCCEEEEEECcc
Confidence 36899999995 444556666663 344 589999987532 332211 1 112223454 8899999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
+.+.. +.... .+.+.+.+..++ -+.++|+|+.+++++..|+..|.+.+.-
T Consensus 141 l~~~~-~~~~~-----------------------~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 141 VVSKE-EALSQ-----------------------YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp GSCHH-HHHHH-----------------------HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ccchH-HHHHH-----------------------HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 97543 22111 111223333333 3789999999999999999999986643
No 11
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.39 E-value=8.3e-07 Score=76.87 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=71.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcC-CCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE-LPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~-lP~InVlsK~DLl 146 (236)
.+.++|||||-.+..++..-...-..+...+.. ++++++|+.... ..+.-...+..++ .|.+.|+||+|+.
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d-~vi~v~D~~~~~-------~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNAD-VIVDIVDSTCLM-------RNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCS-EEEEEEEGGGHH-------HHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCc-EEEEEecCCcch-------hhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 578999999887655443322222223223444 689999987642 1122233445567 9999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
+.. .. ..+. ..+. +. ++ +.++|+|+.+++++.+++..|.+....
T Consensus 123 ~~~-~~----~~~~---------------~~l~----~~---lg-~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 123 KKK-GA----KIDI---------------KKMR----KE---LG-VPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp HHH-TC----CCCH---------------HHHH----HH---HS-SCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred ccc-cc----HHHH---------------HHHH----HH---cC-CcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 533 11 1011 1111 11 12 579999999999999999999987654
No 12
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.37 E-value=3.8e-06 Score=70.24 Aligned_cols=122 Identities=11% Similarity=0.113 Sum_probs=66.7
Q ss_pred CEEEEeCCCceeeeeccc-h-HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhc--CCCEEEEeccc
Q 026576 68 DYLVFDCPGQIELFTHVP-V-LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL--ELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~-~-~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l--~lP~InVlsK~ 143 (236)
.+.|+|||||.+.-.... . ....+..+. ... -++++++|+..-.... ......-+...... +.|.+.|+||+
T Consensus 77 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~-~~~-d~~i~v~d~~~~~s~~--~~~~~~~~~~l~~~~~~~piilv~nK~ 152 (228)
T 2qu8_A 77 KYQIIDTPGLLDRAFENRNTIEMTTITALA-HIN-GVILFIIDISEQCGLT--IKEQINLFYSIKSVFSNKSIVIGFNKI 152 (228)
T ss_dssp EEEEEECTTTTTSCGGGCCHHHHHHHHHHH-TSS-EEEEEEEETTCTTSSC--HHHHHHHHHHHHTCC-CCCEEEEEECG
T ss_pred eEEEEECCCCcCcccchhhhHHHHHHHHhh-ccc-cEEEEEEecccccCcc--hHHHHHHHHHHHHhhcCCcEEEEEeCc
Confidence 578999999965221111 1 011222331 222 3689999985432211 11111112222223 89999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
|+.... ++.. ...+ .+.++...++ ...++++|+++++++++++..|-+.+
T Consensus 153 Dl~~~~-~~~~-------------------~~~~---~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 153 DKCNMD-SLSI-------------------DNKL---LIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp GGCC---CCCH-------------------HHHH---HHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCch-hhHH-------------------HHHH---HHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 997543 1110 0000 1112223333 37899999999999999999887754
No 13
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.36 E-value=4.1e-06 Score=67.29 Aligned_cols=123 Identities=11% Similarity=0.015 Sum_probs=65.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl 146 (236)
.+.++|||||-+.-. ..+ ..++ +.. ++++++|+..-...... ..++..+... ..-+.|.+.|+||+|+.
T Consensus 61 ~~~i~Dt~G~~~~~~---~~~---~~~~--~~d-~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 61 RFLMWDIGGQESLRS---SWN---TYYT--NTE-FVIVVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp EEEEEECCC----CG---GGH---HHHT--TCC-EEEEEEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred EEEEEECCCCHhHHH---HHH---HHhc--CCC-EEEEEEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 578999999865321 111 2232 344 58899997643222221 1222222111 12589999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccCCC
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADL 224 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~~ 224 (236)
+.. .. +.+...+.. ..+... -..++++|+++++++++++..|-+.+.......|
T Consensus 131 ~~~-~~--------~~i~~~~~~--------------~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 131 ECM-TV--------AEISQFLKL--------------TSIKDH-QWHIQACCALTGEGLCQGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp TCC-CH--------HHHHHHHTG--------------GGCCSS-CEEEEECBTTTTBTHHHHHHHHHHHHCC------
T ss_pred CCC-CH--------HHHHHHhCh--------------hhhcCC-CcEEEEccCCCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 532 11 111010100 001111 2689999999999999999999888766544443
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.36 E-value=1.6e-05 Score=63.89 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=79.8
Q ss_pred CCC-hHHHHHHHHHHHHhh-HHHHHHHhc--------ccCCCCEEEEeCCCceeeeec---cchHHHHHHH-HhhCCCce
Q 026576 36 LGP-NGGLIYCMEHLEDNL-DDWLAEELD--------NYLDDDYLVFDCPGQIELFTH---VPVLRNFVDH-LKSRNFNV 101 (236)
Q Consensus 36 LGP-NGalv~~me~l~~n~-~~wl~~~i~--------~~~~~~Yil~D~PGQiElf~~---~~~~~~iv~~-L~~~~~~~ 101 (236)
+|+ |.|.-.-++.|..+- ..-...... .. +.++.++||||..+.-.. ....+.+... +.....--
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (195)
T 1svi_A 29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELK 107 (195)
T ss_dssp EEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEE
T ss_pred ECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCC
Confidence 454 556777777776431 011111111 11 346899999992211000 1112222222 22221113
Q ss_pred EEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026576 102 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS 181 (236)
Q Consensus 102 ~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~ 181 (236)
++++++|+..-...... .+ +......+.|.+.|+||+|+.+.. ++... ...
T Consensus 108 ~~i~v~d~~~~~~~~~~---~~--~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~-----------------------~~~ 158 (195)
T 1svi_A 108 AVVQIVDLRHAPSNDDV---QM--YEFLKYYGIPVIVIATKADKIPKG-KWDKH-----------------------AKV 158 (195)
T ss_dssp EEEEEEETTSCCCHHHH---HH--HHHHHHTTCCEEEEEECGGGSCGG-GHHHH-----------------------HHH
T ss_pred EEEEEEECCCCCCHHHH---HH--HHHHHHcCCCEEEEEECcccCChH-HHHHH-----------------------HHH
Confidence 68999998653332221 11 122234789999999999997644 22110 011
Q ss_pred HHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 182 LIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 182 l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.+.+.......++++|+++++++++++..|-+.+
T Consensus 159 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 159 VRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp HHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 11222223347999999999999999999987765
No 15
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.35 E-value=1e-06 Score=76.44 Aligned_cols=113 Identities=13% Similarity=0.131 Sum_probs=70.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHH-HHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.+.|+|||||-.+..++.. ..+. ..+...+.. ++++++|+.... .... -+.....++.|.+.|+||+|+.
T Consensus 53 ~~~l~DtpG~~~~~~~~~~-e~v~~~~~~~~~~d-~ii~V~D~t~~~---~~~~----~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 53 TINLIDLPGTYSLGYSSID-EKIARDYLLKGDAD-LVILVADSVNPE---QSLY----LLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp EEEEEECCCCSSCCSSSHH-HHHHHHHHHHSCCS-EEEEEEETTSCH---HHHH----HHHHHHTTTCCEEEEEECHHHH
T ss_pred EEEEEECCCcCccCCCCHH-HHHHHHHHhhcCCC-EEEEEeCCCchh---hHHH----HHHHHHhcCCCEEEEEECcCCC
Confidence 5799999998765443321 1122 222223444 689999987642 2221 1233445799999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+.. .+ ..+. .++.+ .++ +.++|+|+.+++++++|+..|-+..+
T Consensus 124 ~~~-~i----~~~~---------------~~l~~-------~lg-~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 124 KKT-GM----KIDR---------------YELQK-------HLG-IPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHT-TC----CBCH---------------HHHHH-------HHC-SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred Ccc-ch----HHHH---------------HHHHH-------HcC-CCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 433 11 1011 11111 122 58999999999999999999988654
No 16
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.34 E-value=3.2e-06 Score=78.78 Aligned_cols=108 Identities=13% Similarity=0.198 Sum_probs=64.9
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccc-------hhhHHHHHHHHHHHHhhcCCC-EEE
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-------VTKFISGCMASLSAMVQLELP-HVN 138 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~d-------p~~~is~~l~sls~m~~l~lP-~In 138 (236)
..+.|+|||||-. ..+.....+.. .. ++++++|+..-.- +...- .+.....+++| .|.
T Consensus 95 ~~~~iiDTPGh~~------f~~~~~~~~~~--aD-~~ilVVDa~~g~~e~~~~~~~qt~e-----~l~~~~~~~v~~iIv 160 (439)
T 3j2k_7 95 KHFTILDAPGHKS------FVPNMIGGASQ--AD-LAVLVISARKGEFETGFEKGGQTRE-----HAMLAKTAGVKHLIV 160 (439)
T ss_pred eEEEEEECCChHH------HHHHHHhhHhh--CC-EEEEEEECCCCccccccCCCchHHH-----HHHHHHHcCCCeEEE
Confidence 4689999999643 34555555643 33 5899999865211 22211 12233457999 678
Q ss_pred EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-----eeEEEeeccCcccHHHH
Q 026576 139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-----VSFMPLDLRKESSIRYV 208 (236)
Q Consensus 139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-----v~f~pls~~d~~~i~~L 208 (236)
|+||+|+......- .++....+.+.+++..+++ +.|+|+|+.+++++.++
T Consensus 161 viNK~Dl~~~~~~~--------------------~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l 215 (439)
T 3j2k_7 161 LINKMDDPTVNWSN--------------------ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQ 215 (439)
T ss_pred EeecCCCcccchHH--------------------HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccc
Confidence 89999996422000 1122222333344444443 68999999999999983
No 17
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.30 E-value=2.5e-06 Score=66.34 Aligned_cols=113 Identities=9% Similarity=0.141 Sum_probs=65.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh-hcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~-~l~lP~InVlsK~DLl 146 (236)
.+.++|||||-+.. ...+ ..++.. . ++++++|+..-..... +..++..+.... .-+.|.+.|+||+|+.
T Consensus 52 ~~~l~D~~G~~~~~---~~~~---~~~~~~--d-~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 52 MLEILDTAGTEQFT---AMRD---LYMKNG--Q-GFALVYSITAQSTFND-LQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp EEEEEEECSSCSST---THHH---HHHHHC--S-EEEEEEETTCHHHHHT-HHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred EEEEEECCChHHHH---HHHH---HHhccC--C-EEEEEEECCCHHHHHH-HHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 36799999986532 2222 223222 3 5778888654321111 112222222211 2489999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.. .. . .+ .+.++...++...++++|+++++++++++..|-+.+
T Consensus 122 ~~~-~~----~--~~-------------------~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 122 DER-VV----G--KE-------------------QGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp GGC-CS----C--HH-------------------HHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccc-cC----C--HH-------------------HHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 532 11 0 00 001122334457899999999999999999987654
No 18
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.29 E-value=6e-06 Score=73.26 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHh-hHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchHHHH-HHHHh-h-CCCceEE
Q 026576 38 PNGGLIYCMEHLEDN-LDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVLRNF-VDHLK-S-RNFNVCA 103 (236)
Q Consensus 38 PNGalv~~me~l~~n-~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~~~i-v~~L~-~-~~~~~~~ 103 (236)
||.|.-+-++.|... + .......+. ....++.++|||||.+ .+..+... ..... . .+.. ++
T Consensus 16 ~nvGKSTLln~l~g~~~-~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~---~~~~l~~~~~~~~~~~l~~ad-~i 90 (301)
T 1wf3_A 16 PNVGKSTLLNNLLGVKV-APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK---PMDALGEFMDQEVYEALADVN-AV 90 (301)
T ss_dssp TTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC---CCSHHHHHHHHHHHHHTSSCS-EE
T ss_pred CCCCHHHHHHHHhCCce-eeecCCCCceeEEEEEEEEeCCcEEEEecCccccc---hhhHHHHHHHHHHHHHHhcCC-EE
Confidence 677788878777642 2 111111111 0123578999999765 22333322 22221 1 2444 68
Q ss_pred EEeecCCCccchhhHHHHHHHHHHHHhhc--CCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026576 104 VYLLDSQFITDVTKFISGCMASLSAMVQL--ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS 181 (236)
Q Consensus 104 V~LiD~~~~~dp~~~is~~l~sls~m~~l--~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~ 181 (236)
++++|+..-..+.. ..++ ...-+. +.|.+.|+||+|+.+....+. +.+
T Consensus 91 l~VvD~~~~~~~~~---~~i~--~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-----------~~~-------------- 140 (301)
T 1wf3_A 91 VWVVDLRHPPTPED---ELVA--RALKPLVGKVPILLVGNKLDAAKYPEEAM-----------KAY-------------- 140 (301)
T ss_dssp EEEEETTSCCCHHH---HHHH--HHHGGGTTTSCEEEEEECGGGCSSHHHHH-----------HHH--------------
T ss_pred EEEEECCCCCChHH---HHHH--HHHHhhcCCCCEEEEEECcccCCchHHHH-----------HHH--------------
Confidence 99999864322221 1221 122234 899999999999975441010 000
Q ss_pred HHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026576 182 LIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 182 l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
.++ ++...++|+|+.++++++.|+..|-+.+..+
T Consensus 141 -~~~---~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 141 -HEL---LPEAEPRMLSALDERQVAELKADLLALMPEG 174 (301)
T ss_dssp -HHT---STTSEEEECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred -HHh---cCcCcEEEEeCCCCCCHHHHHHHHHHhcccC
Confidence 011 3456799999999999999999999876443
No 19
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.28 E-value=1e-05 Score=62.99 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=64.9
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHH-HhhcCCCEEEEeccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSA-MVQLELPHVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~-m~~l~lP~InVlsK~ 143 (236)
..+.++|||||-+. +.+....- .+.. ++++++|+.. +..|-.. ++..+.. ...-+.|.+.|.||+
T Consensus 44 ~~~~i~Dt~G~~~~-------~~~~~~~~-~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~ 111 (164)
T 1r8s_A 44 ISFTVWDVGGQDKI-------RPLWRHYF-QNTQ-GLIFVVDSND---RERVNEAREELMRMLAEDELRDAVLLVFANKQ 111 (164)
T ss_dssp CEEEEEECCCCGGG-------HHHHHHHT-TTCS-EEEEEEETTC---GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred EEEEEEEcCCChhh-------HHHHHHHh-ccCC-EEEEEEECCC---HHHHHHHHHHHHHHHhchhhcCCeEEEEEECc
Confidence 35789999998541 22222221 2344 5788999753 4333222 2211111 112389999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
|+.+.. ... .+...+.. ..+.. .-..++++|+++++++++++..|-+.+
T Consensus 112 Dl~~~~-~~~--------~~~~~~~~--------------~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 112 DLPNAM-NAA--------EITDKLGL--------------HSLRH-RNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp TSTTCC-CHH--------HHHHHTTG--------------GGCSS-CCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred CCcCCC-CHH--------HHHHHhCc--------------ccccC-ccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 996532 111 11111100 00111 125799999999999999999987754
No 20
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.27 E-value=3.3e-06 Score=77.45 Aligned_cols=114 Identities=18% Similarity=0.278 Sum_probs=70.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEeccccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~DL 145 (236)
..+.|+|||||.++ .+.....+ .... ++++++|+..-..+...-. +.....+++|+ |.|+||+|+
T Consensus 66 ~~~~iiDtpG~~~f------~~~~~~~~--~~aD-~~ilVvda~~g~~~qt~e~-----l~~~~~~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 66 RHYAHTDCPGHADY------VKNMITGT--APLD-GCILVVAANDGPMPQTREH-----LLLARQIGVEHVVVYVNKADA 131 (397)
T ss_dssp CEEEEEECSSHHHH------HHHHHHTS--SCCS-EEEEEEETTTCSCHHHHHH-----HHHHHHTTCCCEEEEEECGGG
T ss_pred eEEEEEECCChHHH------HHHHHhhH--hhCC-EEEEEEECCCCCCHHHHHH-----HHHHHHcCCCeEEEEEECccc
Confidence 46899999998651 22333333 2344 5899999876433332211 12223479996 789999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCccc----------HHHHHHH
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESS----------IRYVLSQ 211 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~----------i~~L~~~ 211 (236)
..+...++ .....+.+++..+++ +.|+|+|+.++.+ +..|+..
T Consensus 132 ~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~ 188 (397)
T 1d2e_A 132 VQDSEMVE-----------------------LVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDA 188 (397)
T ss_dssp CSCHHHHH-----------------------HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHH
T ss_pred CCCHHHHH-----------------------HHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHH
Confidence 75321111 111222334444553 7899999998663 8999999
Q ss_pred HHHhhc
Q 026576 212 IDNCIQ 217 (236)
Q Consensus 212 Id~~~~ 217 (236)
|++.+.
T Consensus 189 l~~~~p 194 (397)
T 1d2e_A 189 VDTYIP 194 (397)
T ss_dssp HHHHSC
T ss_pred HHHhCC
Confidence 998665
No 21
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.27 E-value=7.3e-06 Score=75.19 Aligned_cols=114 Identities=18% Similarity=0.330 Sum_probs=71.4
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEeccccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~DL 145 (236)
.++.|+|||||.++ .+.....+.. .. ++++++|+..-..+... -.+.....+++| .|.|+||+|+
T Consensus 75 ~~~~iiDtpG~~~f------~~~~~~~~~~--aD-~~ilVvda~~g~~~qt~-----~~l~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 75 RHYSHVDCPGHADY------IKNMITGAAQ--MD-GAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp CEEEEEECCCSGGG------HHHHHHHHTT--CS-SEEEEEETTTCCCHHHH-----HHHHHHHHTTCCCEEEEEECGGG
T ss_pred eEEEEEECCChHHH------HHHHHHHHHH--CC-EEEEEEECCCCCcHHHH-----HHHHHHHHcCCCEEEEEEECccc
Confidence 46899999997752 3444555533 34 48899998653333221 112223347999 5789999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCccc-----------------
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESS----------------- 204 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~----------------- 204 (236)
..+...++ .....+.+++..+++ ..++|+|+.++++
T Consensus 141 ~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~ 197 (405)
T 2c78_A 141 VDDPELLD-----------------------LVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVD 197 (405)
T ss_dssp CCCHHHHH-----------------------HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHH
T ss_pred cCcHHHHH-----------------------HHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccc
Confidence 75321111 111122234444553 7899999999987
Q ss_pred -HHHHHHHHHHhhc
Q 026576 205 -IRYVLSQIDNCIQ 217 (236)
Q Consensus 205 -i~~L~~~Id~~~~ 217 (236)
+..|+..|++.++
T Consensus 198 ~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 198 KIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHhhcC
Confidence 8889999888765
No 22
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.23 E-value=1.5e-05 Score=72.90 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEec-cc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILS-KM 143 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVls-K~ 143 (236)
+..+.|+|||||.. ..+.....++. .. ++++++| ..-..+..-- .+.....+++|+ |.|+| |+
T Consensus 59 ~~~i~iiDtPGh~~------f~~~~~~~~~~--aD-~ailVvd-~~g~~~qt~e-----~~~~~~~~~i~~~ivvvNNK~ 123 (370)
T 2elf_A 59 GRNMVFVDAHSYPK------TLKSLITALNI--SD-IAVLCIP-PQGLDAHTGE-----CIIALDLLGFKHGIIALTRSD 123 (370)
T ss_dssp SSEEEEEECTTTTT------CHHHHHHHHHT--CS-EEEEEEC-TTCCCHHHHH-----HHHHHHHTTCCEEEEEECCGG
T ss_pred CeEEEEEECCChHH------HHHHHHHHHHH--CC-EEEEEEc-CCCCcHHHHH-----HHHHHHHcCCCeEEEEEEecc
Confidence 34689999999754 33455566643 33 5888999 4322222111 112223578999 99999 99
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEE--eeccC---cccHHHHHHHHHHhh
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMP--LDLRK---ESSIRYVLSQIDNCI 216 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~p--ls~~d---~~~i~~L~~~Id~~~ 216 (236)
|+ ... .++. ...++.+++..++ .+.++| +|+.+ +++++.|+..|.+.+
T Consensus 124 Dl-~~~-~~~~-----------------------~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 124 ST-HMH-AIDE-----------------------LKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp GS-CHH-HHHH-----------------------HHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred CC-CHH-HHHH-----------------------HHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence 99 432 1111 0112223344443 379999 99999 999999999888765
Q ss_pred c
Q 026576 217 Q 217 (236)
Q Consensus 217 ~ 217 (236)
.
T Consensus 179 ~ 179 (370)
T 2elf_A 179 E 179 (370)
T ss_dssp H
T ss_pred c
Confidence 4
No 23
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.22 E-value=3.3e-06 Score=67.66 Aligned_cols=114 Identities=12% Similarity=0.211 Sum_probs=66.2
Q ss_pred CEEEEeCCCceeeeeccc--hHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVP--VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~--~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.++|||||.+...... .+.+....++ +.. ++++++|+..-..... ..++-.+.-....+.|.|.|.||+|+
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~--~ad-~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl 127 (172)
T 2gj8_A 53 PLHIIDTAGLREASDEVERIGIERAWQEIE--QAD-RVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADI 127 (172)
T ss_dssp EEEEEECCCCSCCSSHHHHHHHHHHHHHHH--TCS-EEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHH
T ss_pred EEEEEECCCcccchhHHHHHHHHHHHHHHH--hCC-EEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccC
Confidence 478999999976321111 1222233343 233 5788999865333221 11211122222247999999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 220 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e 220 (236)
.... . .+ . ......|+++|+++++++++++..|-+.+...+
T Consensus 128 ~~~~--~-~~---------------~----------------~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 168 (172)
T 2gj8_A 128 TGET--L-GM---------------S----------------EVNGHALIRLSARTGEGVDVLRNHLKQSMGFDT 168 (172)
T ss_dssp HCCC--C-EE---------------E----------------EETTEEEEECCTTTCTTHHHHHHHHHHHC----
T ss_pred Ccch--h-hh---------------h----------------hccCCceEEEeCCCCCCHHHHHHHHHHHhhhcc
Confidence 5321 0 00 0 012368999999999999999999998876543
No 24
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.21 E-value=8.4e-06 Score=65.75 Aligned_cols=114 Identities=15% Similarity=0.197 Sum_probs=65.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~D 144 (236)
.+.|+|||||-+.. .... ..+ .+.. ++++++|+.. +..+-. .++..+... ...+.|.+.|+||+|
T Consensus 68 ~~~l~Dt~G~~~~~---~~~~---~~~--~~~d-~ii~v~D~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 135 (188)
T 1zd9_A 68 TIKLWDIGGQPRFR---SMWE---RYC--RGVS-AIVYMVDAAD---QEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135 (188)
T ss_dssp EEEEEEECCSHHHH---TTHH---HHH--TTCS-EEEEEEETTC---GGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTT
T ss_pred EEEEEECCCCHhHH---HHHH---HHH--ccCC-EEEEEEECCC---HHHHHHHHHHHHHHHhCcccCCCCEEEEEECCC
Confidence 46799999986522 1111 123 2344 5889999754 333322 222222111 125899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+.... .. ..+...+.. ..... .-..++++|+++++++++++..|-+.+.
T Consensus 136 l~~~~-~~--------~~~~~~~~~--------------~~~~~-~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 136 LPGAL-DE--------KELIEKMNL--------------SAIQD-REICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp STTCC-CH--------HHHHHHTTG--------------GGCCS-SCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred CccCC-CH--------HHHHHHhCh--------------hhhcc-CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 97542 11 111111110 00111 2368999999999999999999887653
No 25
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.21 E-value=4.9e-06 Score=65.86 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=65.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.+.++|||||.+. .....-+.+.. .+...+.. ++++++|+... ..... + +....+.+.|.|.|.||+|+.
T Consensus 51 ~l~i~Dt~G~~~~-~~~~~~~~~~~~~~~~~~~~-~~i~v~D~~~~---~~~~~-~---~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 51 KFKVVDLPGVYSL-TANSIDEIIARDYIINEKPD-LVVNIVDATAL---ERNLY-L---TLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp EEEEEECCCCSCS-SSSSHHHHHHHHHHHHHCCS-EEEEEEETTCH---HHHHH-H---HHHHHHTTCCEEEEEECHHHH
T ss_pred EEEEEECCCcccC-CCcchhHHHHHHHHhcCCCC-EEEEEecCCch---hHhHH-H---HHHHHhcCCCEEEEEEchHhc
Confidence 4789999999873 22211112222 22212344 57889998653 22211 1 112234689999999999985
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
... .. .... .++ + +.++ ..|+++|+++++++++++..+-+.+
T Consensus 122 ~~~-~~----~~~~---------------~~~----~---~~~~-~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 122 KSL-GI----EIDV---------------DKL----E---KILG-VKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HHT-TC----CCCH---------------HHH----H---HHHT-SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ccc-Ch----hhHH---------------HHH----H---HHhC-CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 432 11 1010 111 1 1122 5799999999999999999987654
No 26
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.21 E-value=5.8e-06 Score=77.79 Aligned_cols=121 Identities=13% Similarity=0.239 Sum_probs=67.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhh--HHHHHHHHHHHHhhcCCC-EEEEeccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK--FISGCMASLSAMVQLELP-HVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~--~is~~l~sls~m~~l~lP-~InVlsK~ 143 (236)
..+.|+|||||-. ..+.....++ +.. ++++++|+..-...+. ......-.+.....+++| .|.|+||+
T Consensus 111 ~~~~iiDTPG~~~------f~~~~~~~~~--~aD-~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~ 181 (483)
T 3p26_A 111 ANFTIVDAPGHRD------FVPNAIMGIS--QAD-MAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 181 (483)
T ss_dssp CEEEEECCCCCGG------GHHHHHHHHT--TCS-EEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred ceEEEEECCCcHH------HHHHHHHhhh--hCC-EEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECc
Confidence 3689999999843 3445555563 344 5899999865210000 001111112223346765 88899999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCcccHHH------------
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKESSIRY------------ 207 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~~i~~------------ 207 (236)
|+.+.... .+.+....+.+++..++ -+.|+|+|+.+++++.+
T Consensus 182 Dl~~~~~~----------------------~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~ 239 (483)
T 3p26_A 182 DNVDWSQQ----------------------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYN 239 (483)
T ss_dssp GGGTTCHH----------------------HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCC
T ss_pred CcccchHH----------------------HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccC
Confidence 99753210 11111122223333333 37899999999999973
Q ss_pred ---HHHHHHHhhcc
Q 026576 208 ---VLSQIDNCIQW 218 (236)
Q Consensus 208 ---L~~~Id~~~~y 218 (236)
|+..++.....
T Consensus 240 g~~L~~~L~~i~~~ 253 (483)
T 3p26_A 240 GPNLMSTLENAAFK 253 (483)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 66777776544
No 27
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.20 E-value=6.2e-06 Score=65.39 Aligned_cols=123 Identities=12% Similarity=0.144 Sum_probs=69.1
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL 145 (236)
+.++|||||-+.-. ..+. .+ .+.. ++++++|+.. +..+-.. ++..+... .-+.|.+.|+||+|+
T Consensus 55 ~~i~Dt~G~~~~~~---~~~~---~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl 121 (186)
T 1mh1_A 55 LGLWDTAGQEDYDR---LRPL---SY--PQTD-VSLICFSLVS---PASFENVRAKWYPEVRHH-CPNTPIILVGTKLDL 121 (186)
T ss_dssp EEEECCCCSGGGTT---TGGG---GC--TTCS-EEEEEEETTC---HHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHH
T ss_pred EEEEECCCCHhHHH---HHHH---hc--cCCc-EEEEEEECCC---hhhHHHHHHHHHHHHHHh-CCCCCEEEEeEcccc
Confidence 45999999854211 1100 11 2333 5788999753 4443332 22222222 228999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.......+.+ . ......- .. ....++...++...++++|+.+++++++++..|-+.+..
T Consensus 122 ~~~~~~~~~~-~--------~~~~~~v-~~----~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 122 RDDKDTIEKL-K--------EKKLTPI-TY----PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HTCHHHHHHH-H--------HTTCCCC-CH----HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred cccchhhhhh-c--------ccccccC-CH----HHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 7654111111 0 0000000 00 111123344566799999999999999999999887643
No 28
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.19 E-value=9.6e-06 Score=63.82 Aligned_cols=110 Identities=11% Similarity=0.211 Sum_probs=64.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHH-HHHhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASL-SAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sl-s~m~~l~lP~InVlsK~D 144 (236)
.+.++|||||-+. +...+.. ++.. . ++++++|+.. +..+ +..++..+ ......+.|.+.|+||+|
T Consensus 58 ~~~~~Dt~G~~~~---~~~~~~~---~~~~--d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (181)
T 2fn4_A 58 RLDILDTAGQEEF---GAMREQY---MRAG--H-GFLLVFAIND---RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 125 (181)
T ss_dssp EEEEEECCCTTTT---SCCHHHH---HHHC--S-EEEEEEETTC---HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGG
T ss_pred EEEEEECCCchhh---HHHHHHH---HhhC--C-EEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 4578999998763 2222222 3222 2 4677888654 3332 22222222 222235899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.+.. ++.. . .... +...++ ..++++|+++++++++++..|-+.+
T Consensus 126 l~~~~-~v~~------~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 126 LESQR-QVPR------S------------EASA-------FGASHH-VAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp GGGGC-CSCH------H------------HHHH-------HHHHTT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccccc-ccCH------H------------HHHH-------HHHHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Confidence 97533 1100 0 0001 111222 5899999999999999999988765
No 29
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.19 E-value=8.7e-06 Score=64.93 Aligned_cols=109 Identities=10% Similarity=0.190 Sum_probs=63.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.|+|||||-+.. ...+ ..++ +.. ++++++|+. ++..+-...-+-..+.-..+.|.+.|+||+| ..
T Consensus 94 ~~~i~Dt~G~~~~~---~~~~---~~~~--~~d-~~i~v~D~~---~~~s~~~~~~~~~~i~~~~~~piilv~NK~D-~~ 160 (208)
T 3clv_A 94 KFDIWDTAGQERYA---SIVP---LYYR--GAT-CAIVVFDIS---NSNTLDRAKTWVNQLKISSNYIIILVANKID-KN 160 (208)
T ss_dssp EEEEEECTTGGGCT---TTHH---HHHT--TCS-EEEEEEETT---CHHHHHHHHHHHHHHHHHSCCEEEEEEECTT-CC
T ss_pred EEEEEECCCcHHHH---HHHH---HHhc--CCC-EEEEEEECC---CHHHHHHHHHHHHHHHhhCCCcEEEEEECCC-cc
Confidence 57999999986632 2222 2232 233 589999965 3433322211111222234699999999999 32
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.. +. ..+. +.++...++ +.++++|+++++++++++..|-+.+
T Consensus 161 ~~-~~------~~~~-------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 161 KF-QV------DILE-------------------VQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp -C-CS------CHHH-------------------HHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cc-cC------CHHH-------------------HHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 21 00 0000 011222233 4899999999999999999887643
No 30
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.18 E-value=5.1e-06 Score=64.66 Aligned_cols=111 Identities=15% Similarity=0.241 Sum_probs=64.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||-+.... .+ ..++ +.. ++++++|+..-.... .+..++..+.... -+.|.+.|+||+|+.+
T Consensus 55 ~~~l~Dt~G~~~~~~~---~~---~~~~--~~d-~~i~v~d~~~~~s~~-~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 55 RLMLWDTAGQEEFDAI---TK---AYYR--GAQ-ACVLVFSTTDRESFE-AISSWREKVVAEV-GDIPTALVQNKIDLLD 123 (168)
T ss_dssp EEEEECCTTGGGTTCC---CH---HHHT--TCC-EEEEEEETTCHHHHH-THHHHHHHHHHHH-CSCCEEEEEECGGGGG
T ss_pred EEEEEcCCCcHhHHHH---HH---HHhc--CCC-EEEEEEECcCHHHHH-HHHHHHHHHHHhC-CCCCEEEEEECcccCc
Confidence 5789999998764321 11 1232 233 578889975422111 1222222222222 4899999999999975
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.. +. . .+ ... ++...++ ..++++|+++++++++++..|-+.+
T Consensus 124 ~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 124 DS-CI----K--NE------------EAE-------GLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp GC-SS----C--HH------------HHH-------HHHHHHT-CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred cc-cc----C--HH------------HHH-------HHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHH
Confidence 32 11 0 00 001 1112233 4899999999999999999887643
No 31
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.18 E-value=1.7e-05 Score=69.43 Aligned_cols=114 Identities=13% Similarity=0.190 Sum_probs=69.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.++.++|||||-.+-.++ .-..+.. .+...+.. ++++++|+... ..... -......++.|.|.|+||+|+
T Consensus 49 ~~l~l~DtpG~~~~~~~~-~~e~v~~~~~~~~~~d-~vi~V~D~t~~---e~~~~----~~~~l~~~~~p~ilv~NK~Dl 119 (272)
T 3b1v_A 49 KDLEIQDLPGIYSMSPYS-PEAKVARDYLLSQRAD-SILNVVDATNL---ERNLY----LTTQLIETGIPVTIALNMIDV 119 (272)
T ss_dssp TTEEEEECCCCSCSSCSS-HHHHHHHHHHHTTCCS-EEEEEEEGGGH---HHHHH----HHHHHHHTCSCEEEEEECHHH
T ss_pred CeEEEEECCCcCccCCCC-hHHHHHHHHHhcCCCC-EEEEEecCCch---HhHHH----HHHHHHhcCCCEEEEEEChhh
Confidence 368999999987653332 1112222 22222344 68899998653 22221 122234479999999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.+.. ... .+. .+|.+ .+ + +.++|+|+.+++++++++..|-+...
T Consensus 120 ~~~~-~~~----~~~---------------~~l~~----~l---g-~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 120 LDGQ-GKK----INV---------------DKLSY----HL---G-VPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp HHHT-TCC----CCH---------------HHHHH----HH---T-SCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred CCcC-CcH----HHH---------------HHHHH----Hc---C-CCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 6433 111 111 11111 11 2 57999999999999999999988654
No 32
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.18 E-value=4e-06 Score=66.40 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=66.2
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL 145 (236)
+-++|||||-+.-.. .+ ..+ .+.. ++++++|+. ++..+-.. ++-.+.... -+.|.+.|.||+|+
T Consensus 58 ~~i~Dt~G~~~~~~~---~~---~~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl 124 (182)
T 3bwd_D 58 LGLWDTAGQEDYNRL---RP---LSY--RGAD-VFILAFSLI---SKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDL 124 (182)
T ss_dssp CEEECCCC-CTTTTT---GG---GGG--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHH
T ss_pred EEEEECCCChhhhhh---HH---hhc--cCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhh
Confidence 459999998653211 11 112 2334 588899965 34443332 222222222 28999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+....... ... ... . .. ....++...++...|+++|+++++++++++..+-+.+
T Consensus 125 ~~~~~~~~~--~~~-------~~~-v--~~----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 125 RDDKQFFID--HPG-------AVP-I--TT----VQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HTCHHHHHH--C---------CCC-C--CH----HHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCcccccc--ccc-------CCC-C--CH----HHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 765421110 000 000 0 00 0111233345657899999999999999999987754
No 33
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.17 E-value=8.4e-06 Score=63.71 Aligned_cols=115 Identities=12% Similarity=0.120 Sum_probs=64.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl 146 (236)
.+.++|||||-+. +...+ ..+ .+.. ++++++|+..-...... ..++..+... ...+.|.+.|+||+|+.
T Consensus 52 ~~~~~Dt~G~~~~---~~~~~---~~~--~~~d-~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 52 KFQVWDLGGLTSI---RPYWR---CYY--SNTD-AVIYVVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp EEEEEEECCCGGG---GGGGG---GGC--TTCS-EEEEEEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEECCCChhh---hHHHH---HHh--ccCC-EEEEEEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 4689999998542 11111 112 2344 58899997543222221 1122111111 11589999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.. ... .+...+.. ......+ ..++++|+++++++++++..+-+.+
T Consensus 122 ~~~-~~~--------~~~~~~~~--------------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 122 QAM-TSS--------EMANSLGL--------------PALKDRK-WQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp TCC-CHH--------HHHHHHTG--------------GGCTTSC-EEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCC-CHH--------HHHHHhCc--------------hhccCCc-eEEEECcCCCCcCHHHHHHHHHHHH
Confidence 542 111 11111100 0112222 5899999999999999999987754
No 34
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.17 E-value=8.2e-06 Score=64.87 Aligned_cols=112 Identities=14% Similarity=0.211 Sum_probs=64.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh-cCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-LELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~-l~lP~InVlsK~DLl 146 (236)
.+.++|||||-+ .+.+....- .+.. ++++++|+..-..... +..++..+..... .+.|.+.|+||+|+.
T Consensus 71 ~~~l~Dt~G~~~-------~~~~~~~~~-~~~d-~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 71 HLQLWDTAGLER-------FRSLTTAFF-RDAM-GFLLLFDLTNEQSFLN-VRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEECCSGG-------GHHHHHHTT-TTCS-EEEEEEETTCHHHHHT-HHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred EEEEEeCCCcHH-------HHHHHHHHH-cCCC-EEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 478999999843 122222221 2344 5888999754322211 1222222222222 589999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
... .. . .+ ... ++...++ +.++++|+++++++++++..|-+.+
T Consensus 141 ~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 141 DQR-AV----K--EE------------EAR-------ELAEKYG-IPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp GGC-CS----C--HH------------HHH-------HHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccc-cc----C--HH------------HHH-------HHHHHcC-CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 532 11 0 00 001 1111223 4799999999999999999987754
No 35
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.17 E-value=9.5e-06 Score=62.53 Aligned_cols=108 Identities=13% Similarity=0.208 Sum_probs=63.2
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh-cCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ-LELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~-l~lP~InVlsK~DL 145 (236)
+.++|||||-+.. ...+ ..+... . ++++++|+. ++..+- ..++..+..... -+.|.+.|+||+|+
T Consensus 53 ~~~~D~~G~~~~~---~~~~---~~~~~~--~-~~i~v~d~~---~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl 120 (166)
T 2ce2_X 53 LDILDTAGQEEYS---AMRD---QYMRTG--E-GFLCVFAIN---NTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120 (166)
T ss_dssp EEEEECCCCSSCC---HHHH---HHHHHC--S-EEEEEEETT---CHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred EEEEECCCchhhh---HHHH---HhhccC--C-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhh
Confidence 5789999986532 2121 223232 2 467788865 343332 222222222222 27999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+.. ... . ...+ +...++ +.++++|+.+++++++++..|-+.+
T Consensus 121 ~~~~-~~~-------~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 121 AART-VES-------R------------QAQD-------LARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp SCCC-SCH-------H------------HHHH-------HHHHHT-CCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred hhcc-cCH-------H------------HHHH-------HHHHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Confidence 7532 000 0 0011 112223 4799999999999999999987654
No 36
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.17 E-value=1.5e-05 Score=73.18 Aligned_cols=113 Identities=11% Similarity=0.202 Sum_probs=68.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCC-CEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLEL-PHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~l-P~InVlsK~DL 145 (236)
.+.|+|||||.. ..+.....+. ... ++++++|+..-. .+...-...+ ...++. |.|.|+||+|+
T Consensus 84 ~i~iiDtPGh~~------f~~~~~~~~~--~~D-~~ilVvda~~g~~~~qt~e~l~~-----~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 84 RVSFIDAPGHEA------LMTTMLAGAS--LMD-GAILVIAANEPCPRPQTREHLMA-----LQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEECSSHHH------HHHHHHHCGG--GCS-EEEEEEETTSCSSCHHHHHHHHH-----HHHHTCCCEEEEEECGGG
T ss_pred EEEEEECCChHH------HHHHHHhhhh--hCC-EEEEEEECCCCCCChhHHHHHHH-----HHHcCCCcEEEEEECccC
Confidence 589999999643 2233333332 233 589999987432 4444332211 123455 67788999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.... .... .+ +.+.+++..+ .-+.++|+|+.+++++..|+..|.+.+.-
T Consensus 150 ~~~~-~~~~-------------------~~----~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 150 VDKE-KALE-------------------NY----RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp SCHH-HHHH-------------------HH----HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCHH-HHHH-------------------HH----HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 7543 1110 00 1112233332 23789999999999999999999986653
No 37
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.17 E-value=6.3e-06 Score=64.25 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=64.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.++|||||-+. +...+ ..++ +.. ++++++|+.. +..+- ..++-.+.....-..|.+.|.||+|+
T Consensus 56 ~~~~~Dt~G~~~~---~~~~~---~~~~--~~~-~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl 123 (170)
T 1z0j_A 56 KFLIWDTAGLERF---RALAP---MYYR--GSA-AAIIVYDITK---EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 123 (170)
T ss_dssp EEEEEEECCSGGG---GGGTH---HHHT--TCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTC
T ss_pred EEEEEcCCCchhh---hcccH---hhCc--CCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcc
Confidence 4679999998431 11111 2232 233 5788899754 33322 22333333322347888889999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+.. +.. . + . .. ++...++ ..++++|+++++++++++..|-+.+
T Consensus 124 ~~~~-~v~---~---~------------~----~~---~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 124 TDVR-EVM---E---R------------D----AK---DYADSIH-AIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp GGGC-CSC---H---H------------H----HH---HHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred cccc-ccC---H---H------------H----HH---HHHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 7532 110 0 0 0 00 1112233 6899999999999999999987654
No 38
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.17 E-value=1e-05 Score=66.01 Aligned_cols=120 Identities=9% Similarity=0.177 Sum_probs=67.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+.|+|||||-+....... .+ .+.. ++++++|+. ++..+-.. ++-.+. ...-+.|.+.|+||+|
T Consensus 74 ~l~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~D 140 (201)
T 2gco_A 74 ELALWDTAGQEDYDRLRPL------SY--PDTD-VILMCFSID---SPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKD 140 (201)
T ss_dssp EEEEECCCCSGGGTTTGGG------GC--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHH-HHSTTCCEEEEEECGG
T ss_pred EEEEEECCCchhHHHHHHH------hc--CCCC-EEEEEEECC---CHHHHHHHHHHHHHHHH-HhCCCCCEEEEEecHH
Confidence 4678999998653221111 12 2333 578888865 34443322 211111 1123899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhh-hcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELN-QHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~-~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+.........+.. +. .... .....++...++...|+++|+++++++++++..|-+.
T Consensus 141 l~~~~~~~~~~~~---------~~~~~v~------~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 141 LRQDEHTRRELAK---------MKQEPVR------SEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp GTTCHHHHHHHHT---------TTCCCCC------HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hhcCccchhhhcc---------cccCcCC------HHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 9865421111100 00 0000 0111133445566689999999999999999988764
No 39
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.17 E-value=1.5e-05 Score=63.32 Aligned_cols=109 Identities=14% Similarity=0.193 Sum_probs=61.6
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHh-hcCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV-QLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~-~l~lP~InVlsK~DL 145 (236)
+.++|||||-+... ..+. .+... . ++++++|+.. +..+- ..++..+.... .-+.|.+.|+||+|+
T Consensus 54 ~~i~Dt~G~~~~~~---~~~~---~~~~~--~-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 121 (189)
T 4dsu_A 54 LDILDTAGQEEYSA---MRDQ---YMRTG--E-GFLCVFAINN---TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121 (189)
T ss_dssp EEEEECCCC---CT---THHH---HHHHC--S-EEEEEEETTC---HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTS
T ss_pred EEEEECCCcHHHHH---HHHH---HHhcC--C-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccC
Confidence 45799999876432 2222 23222 2 4777888653 33322 22222222221 248999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.+.. ... + .... +...++ ..++++|+.+++++++++..+-+.+.
T Consensus 122 ~~~~-~~~-------~------------~~~~-------~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 122 PSRT-VDT-------K------------QAQD-------LARSYG-IPFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp SSCS-SCH-------H------------HHHH-------HHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccc-cCH-------H------------HHHH-------HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 7432 000 0 0011 111222 57999999999999999998877654
No 40
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.16 E-value=9.4e-06 Score=73.33 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=64.8
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
..+|+|+||||.- .....+ + .... ++++++|+........+.. -.++.|.+.|+||+|+
T Consensus 171 ~~~~iiiDTpGi~------~~~~~~---~--~~aD-~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 171 GFDVILIETVGVG------QSEVAV---A--NMVD-TFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADG 229 (355)
T ss_dssp TCCEEEEEECSCS------SHHHHH---H--TTCS-EEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCG
T ss_pred CCCEEEEeCCCCC------cHHHHH---H--HhCC-EEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCC
Confidence 5689999999921 121111 2 2234 5888999765332221110 1146799999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh--ccCC-eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSM-VSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~--d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.+.. ...... .++...+ ..+. ..+. ..++|+|+.+++++++|+..|.+.+..
T Consensus 230 ~~~~-~~~~~~-------------------~~l~~~l-~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 230 EHHK-EARLAA-------------------RELSAAI-RLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGHH-HHHHHH-------------------HHHHHHH-HHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred cChh-HHHHHH-------------------HHHHHHH-hhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6543 121100 1111111 1111 1122 579999999999999999999887654
No 41
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.16 E-value=2.1e-05 Score=60.70 Aligned_cols=109 Identities=14% Similarity=0.218 Sum_probs=63.5
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHh-hcCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~-~l~lP~InVlsK~DL 145 (236)
+.++|||||-+... .. -..++.. . ++++++|+.. +..+ +..++..+.... ..+.|.+.|+||+|+
T Consensus 53 ~~l~D~~G~~~~~~---~~---~~~~~~~--~-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1kao_A 53 LEILDTAGTEQFAS---MR---DLYIKNG--Q-GFILVYSLVN---QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp EEEEECCCTTCCHH---HH---HHHHHHC--S-EEEEEEETTC---HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred EEEEECCCchhhHH---HH---HHHhccC--C-EEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 67999999865321 11 1223332 3 5788888763 3332 222222222222 248999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+.. +... . ...++ ...++ ..++++|+++++++++++..|-+.+
T Consensus 121 ~~~~-~~~~------~------------~~~~~-------~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 121 ESER-EVSS------S------------EGRAL-------AEEWG-CPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp GGGC-CSCH------H------------HHHHH-------HHHHT-SCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred cccc-cCCH------H------------HHHHH-------HHHhC-CCEEEecCCCCcCHHHHHHHHHHHH
Confidence 6433 1100 0 00111 11222 4799999999999999999987654
No 42
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.15 E-value=1.5e-05 Score=62.50 Aligned_cols=110 Identities=13% Similarity=0.240 Sum_probs=66.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.++|||||-+... ... ..++. .. ++++++|+.. +..+ +..++..+.....-+.|.+.|+||+|+
T Consensus 64 ~~~~~Dt~G~~~~~~---~~~---~~~~~--~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 131 (179)
T 2y8e_A 64 RLQLWDTAGQERFRS---LIP---SYIRD--ST-VAVVVYDITN---TNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 131 (179)
T ss_dssp EEEEEEECCSGGGGG---GSH---HHHHT--CS-EEEEEEETTC---HHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGG
T ss_pred EEEEEECCCcHHHHH---HHH---HHhcC--CC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcc
Confidence 468999999765322 111 22322 33 5788999753 3222 223333333333458999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... +.. .. ...+ ....++ ..++++|+++++++++++..|-+.+
T Consensus 132 ~~~~-~~~------~~------------~~~~-------~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 132 SDKR-QVS------TE------------EGER-------KAKELN-VMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp GGGC-CSC------HH------------HHHH-------HHHHHT-CEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred cccC-cCC------HH------------HHHH-------HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7532 110 00 0001 111222 5899999999999999999987754
No 43
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.14 E-value=1.5e-05 Score=62.88 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=67.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||-++..... ..+ .+.. ++++++|+..-..+..+- .+......+.|.+.|+||+|+..
T Consensus 56 ~~~l~Dt~G~~~~~~~~~------~~~--~~~d-~~i~v~d~~~~~~~~~~~-----~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 56 KITFLDTPGHEAFTTMRA------RGA--QVTD-IVILVVAADDGVMPQTVE-----AINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp EEEESCCCSSSSSSCSCC------SSC--CCCC-EEEEEEETTCCCCHHHHH-----HHHHHGGGSCCEEEEEETTTSSC
T ss_pred eEEEEECCCCHHHHHHHH------HHH--hhCC-EEEEEEECCCCCcHHHHH-----HHHHHHhCCCCEEEEEECccCCc
Confidence 578999999876433221 011 2233 578888975533333332 12333446899999999999975
Q ss_pred ch-hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 148 NK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 148 ~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.. .++... +.. . ..+...++. ..++++|+++++++++++..|-+...
T Consensus 122 ~~~~~~~~~-----------~~~-~-----------~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 122 ANPDRVMQE-----------LME-Y-----------NLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp SCHHHHHHH-----------HTT-T-----------TCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-----------HHh-c-----------CcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 32 011111 100 0 001122332 78999999999999999999877544
No 44
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.14 E-value=8.5e-06 Score=64.81 Aligned_cols=108 Identities=12% Similarity=0.212 Sum_probs=64.0
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHH-HhhcCCCEEEEecccccc
Q 026576 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSA-MVQLELPHVNILSKMDLV 146 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~-m~~l~lP~InVlsK~DLl 146 (236)
-++|||||-+... ..+. .++. .. ++++++|+.. +..| +..++..+.. ....+.|.+.|.||+|+.
T Consensus 69 ~i~Dt~G~~~~~~---~~~~---~~~~--~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 69 DVLDTAGQEEFSA---MREQ---YMRT--GD-GFLIVYSVTD---KASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp EEEECCSCGGGCS---SHHH---HHHH--CS-EEEEEEETTC---HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred EEEECCCchhhHH---HHHH---HHhc--CC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 3599999876332 2222 2322 23 5788888754 3333 2223222222 234689999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeecc-CcccHHHHHHHHHHhh
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~-d~~~i~~L~~~Id~~~ 216 (236)
... ... .+ ...++...++ ..++++|++ +++++++++..|-+.+
T Consensus 137 ~~~-~v~------~~-------------------~~~~~~~~~~-~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 137 HLR-KVT------RD-------------------QGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp TTC-CSC------HH-------------------HHHHHHHHHT-CCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred hcc-CcC------HH-------------------HHHHHHHHhC-CeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 532 110 00 0011222334 679999999 9999999999887654
No 45
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.14 E-value=1.1e-05 Score=63.05 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=63.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
...++|||||-+....... .+ .+.. ++++++|+.. +..+ +..++-.+.....-+.|.+.|+||+|+
T Consensus 56 ~l~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 123 (170)
T 1z08_A 56 NLAIWDTAGQERFHALGPI------YY--RDSN-GAILVYDITD---EDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123 (170)
T ss_dssp EEEEEECCCC-------CC------SS--TTCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGG
T ss_pred EEEEEECCCcHhhhhhHHH------Hh--ccCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc
Confidence 3578899998664321111 11 2333 5788899654 3322 233333444444468999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+.. .. . .+ ... ++...++ ..++++|+++++++++++..|-+.+
T Consensus 124 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 124 EKER-HV----S--IQ------------EAE-------SYAESVG-AKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp GGGC-CS----C--HH------------HHH-------HHHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cccc-cc----C--HH------------HHH-------HHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Confidence 6532 11 0 00 001 1122233 6889999999999999999886643
No 46
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.13 E-value=7e-06 Score=65.58 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=67.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.+.++|||||.++.... .-..+.. .+...+.. ++++++|+.... .. ...+....+.+.|.+.|.||+|+.
T Consensus 55 ~~~l~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~~-~~i~v~d~~~~~---~~----~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 55 KFKVVDLPGVYSLTANS-IDEIIARDYIINEKPD-LVVNIVDATALE---RN----LYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp EEEEEECCCCSCCSSSS-HHHHHHHHHHHHHCCS-EEEEEEEGGGHH---HH----HHHHHHHHTTTCCEEEEEECHHHH
T ss_pred EEEEEECCCcCcccccc-HHHHHHHHHHhccCCC-EEEEEecchhHH---HH----HHHHHHHHhcCCCEEEEEEhhhcc
Confidence 46899999997753221 1111211 22212334 578899976422 11 111222334689999999999986
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
... .+. ... .++ .+.++ ..++++|+++++++++++..|-+.....
T Consensus 126 ~~~-~~~----~~~---------------~~~-------~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 126 KSL-GIE----IDV---------------DKL-------EKILG-VKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp HHT-TCC----CCH---------------HHH-------HHHHT-SCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred ccc-cch----HHH---------------HHH-------HHHhC-CCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 432 111 011 111 11122 4799999999999999999998876544
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.13 E-value=3e-05 Score=59.91 Aligned_cols=110 Identities=12% Similarity=0.222 Sum_probs=62.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh-cCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ-LELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~-l~lP~InVlsK~D 144 (236)
.+.++|||||-+.. ...+ ..++. .. ++++++|+.. +..+- ..++..+..... -+.|.+.|+||+|
T Consensus 53 ~~~l~D~~G~~~~~---~~~~---~~~~~--~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 120 (168)
T 1u8z_A 53 QIDILDTAGQEDYA---AIRD---NYFRS--GE-GFLCVFSITE---MESFAATADFREQILRVKEDENVPFLLVGNKSD 120 (168)
T ss_dssp EEEEEECCC---CH---HHHH---HHHHH--CS-EEEEEEETTC---HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGG
T ss_pred EEEEEECCCcchhH---HHHH---HHhhc--CC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 46799999976521 1111 22322 23 5788888763 33332 222222222222 3899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.+.. +. . .+ ... +....++ ..++++|+.+++++++++..+-+.+
T Consensus 121 l~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 121 LEDKR-QV----S--VE------------EAK-------NRADQWN-VNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp GGGGC-CS----C--HH------------HHH-------HHHHHHT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccC-cc----C--HH------------HHH-------HHHHHcC-CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 96533 11 0 00 000 1112233 4799999999999999999887654
No 48
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.12 E-value=7.4e-06 Score=65.76 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=64.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl 146 (236)
.+.++|||||-+.-.... ..+ .+.. ++++++|+..-....... ..+..+... ..-+.|.+.|+||+|+.
T Consensus 67 ~~~~~Dt~G~~~~~~~~~------~~~--~~~d-~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 67 SFEVWDLGGQTGVRPYWR------CYF--SDTD-AVIYVVDSTDRDRMGVAK-HELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp EEEEEEECCSSSSCCCCS------SSS--TTCC-EEEEEEETTCCTTHHHHH-HHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred EEEEEECCCCHhHHHHHH------HHh--hcCC-EEEEEEeCCCHHHHHHHH-HHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 578999999865322111 011 1334 588999976432222111 111111110 11379999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.. ... .+...+.. +.+... -..++++|+++++++++++..|-+.+
T Consensus 137 ~~~-~~~--------~~~~~~~~--------------~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 137 DAA-SEA--------EIAEQLGV--------------SSIMNR-TWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp TCC-CHH--------HHHHHTTG--------------GGCCSS-CEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCC-CHH--------HHHHHhCh--------------hhccCC-ceEEEEccCCCccCHHHHHHHHHHHH
Confidence 542 111 11111100 011122 25899999999999999999987765
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.12 E-value=1.7e-05 Score=62.31 Aligned_cols=112 Identities=13% Similarity=0.187 Sum_probs=66.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||-+. +.. .-..++. .. ++++++|+..-.... .+..++..+......+.|.+.|+||+|+..
T Consensus 65 ~~~l~Dt~G~~~~---~~~---~~~~~~~--~d-~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 65 KLQIWDTAGQERF---RAV---TRSYYRG--AA-GALMVYDITRRSTYN-HLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp EEEEEECTTGGGT---CHH---HHHHHHT--CS-EEEEEEETTCHHHHH-THHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEECCCChHh---hhh---HHHHhcc--CC-EEEEEEeCcCHHHHH-HHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 4688999997552 111 1223322 33 588899976432221 233344344444446899999999999964
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.. +. . .+ ... ++...++ +.++++|+++++++++++..+-+.+
T Consensus 135 ~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 135 QR-DV----T--YE------------EAK-------QFAEENG-LLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp GC-CS----C--HH------------HHH-------HHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cc-cc----C--HH------------HHH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 32 11 0 00 001 1122233 5899999999999999998876543
No 50
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.11 E-value=4.1e-06 Score=68.76 Aligned_cols=122 Identities=10% Similarity=0.163 Sum_probs=68.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+.|+|||||-+....... .+ .+.. ++++++|+.. +..+-.. ++-.+.. ..-+.|.+.|+||+|
T Consensus 74 ~~~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~D 140 (207)
T 2fv8_A 74 ELALWDTAGQEDYDRLRPL------SY--PDTD-VILMCFSVDS---PDSLENIPEKWVPEVKH-FCPNVPIILVANKKD 140 (207)
T ss_dssp EEEEEECTTCTTCTTTGGG------GC--TTCC-EEEEEEETTC---HHHHHHHHHTHHHHHHH-HSTTCCEEEEEECGG
T ss_pred EEEEEECCCcHHHHHHHHh------hc--CCCC-EEEEEEECCC---HHHHHHHHHHHHHHHHH-hCCCCCEEEEEEchh
Confidence 4689999998764321111 12 2333 5788888653 3333322 2211111 112899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.... .....+. .+....- .. ....++...++...++++|+++++++++++..|-+..
T Consensus 141 l~~~~-~~~~~~~--------~~~~~~v-~~----~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 141 LRSDE-HVRTELA--------RMKQEPV-RT----DDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp GGGCH-HHHHHHH--------HTTCCCC-CH----HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhccc-cchhhhh--------hcccCCC-CH----HHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 98654 2211111 0100000 00 0111233445666899999999999999999987754
No 51
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.11 E-value=2.2e-06 Score=70.42 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=68.1
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHHhhcCCCEEEEecccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m~~l~lP~InVlsK~DLl 146 (236)
+.++|||||-+.-.. .+ ..+ .+.. ++++++|+. ++..+-... +........-+.|.+.|.||+|+.
T Consensus 80 l~i~Dt~G~~~~~~~---~~---~~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 80 LGLWDTAGLEDYDRL---RP---LSY--PQTD-VFLICFSLV---SPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp EEEEEECCSGGGTTT---GG---GGC--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred EEEEECCCchhhHHH---HH---HHh--ccCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 349999998442111 00 011 2334 588889965 444444321 111111112389999999999998
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
......+. .. +.....- . .....++...++...|+++|+++++++++++..|-+.
T Consensus 148 ~~~~~~~~-~~--------~~~~~~v-~----~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 148 DDKDTIEK-LK--------EKKLTPI-T----YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp TCHHHHHH-HH--------HTTCCCC-C----HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred cchhhhhh-hh--------ccccccc-c----HHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 65421111 10 0000000 0 0112234456677789999999999999999998764
No 52
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.11 E-value=9.8e-06 Score=65.56 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=66.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+.- .... ..++ +.. ++++++|+.. +..+- ..++..+.....-+.|.+.|+||+|+
T Consensus 73 ~~~i~Dt~G~~~~~---~~~~---~~~~--~~d-~iilV~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl 140 (192)
T 2fg5_A 73 KFLIWDTAGQERFH---SLAP---MYYR--GSA-AAVIVYDITK---QDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 140 (192)
T ss_dssp EEEEEEECCSGGGG---GGTH---HHHT--TCS-EEEEEEETTC---THHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEcCCCchhhH---hhhH---Hhhc--cCC-EEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 46899999976532 1111 2232 333 5788999653 33332 22332222222237999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.... +. . .+ . +.++...++ ..++++|+++++++++++..|-+.+.
T Consensus 141 ~~~~-~v----~--~~------------~-------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 141 SDIR-EV----P--LK------------D-------AKEYAESIG-AIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp GGGC-CS----C--HH------------H-------HHHHHHTTT-CEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred cccc-cc----C--HH------------H-------HHHHHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 6422 11 0 00 0 111223344 68999999999999999999988664
No 53
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.11 E-value=2.2e-05 Score=64.27 Aligned_cols=135 Identities=18% Similarity=0.186 Sum_probs=65.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHH---HhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA---MVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~---m~~l~lP~InVlsK~D 144 (236)
.+.|+|||||-++. ..+....-+ +.. ++++++|+.........+...+..... ....+.|.+.|.||+|
T Consensus 55 ~~~i~Dt~G~~~~~------~~~~~~~~~-~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 126 (214)
T 2fh5_B 55 SLTLIDLPGHESLR------FQLLDRFKS-SAR-AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 126 (214)
T ss_dssp EEEEEECCCCHHHH------HHHHHHHGG-GEE-EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTT
T ss_pred EEEEEECCCChhHH------HHHHHHHHh-hCC-EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCC
Confidence 47999999986421 113333212 233 689999986532222222222222211 1234799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhh---h-cchhHHHHHHHHHHH-Hhh----cc-----C-CeeEEEeeccCc------c
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELN---Q-HMAPQFAKLNKSLIE-LVD----EY-----S-MVSFMPLDLRKE------S 203 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~---~-~~~~~~~~l~~~l~~-li~----d~-----~-lv~f~pls~~d~------~ 203 (236)
+.... ....... .+...+. . .....-..=...+.+ ++. .| . -+.|++.|++++ +
T Consensus 127 l~~~~-~~~~~~~----~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~ 201 (214)
T 2fh5_B 127 IAMAK-SAKLIQQ----QLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSA 201 (214)
T ss_dssp STTCC-CHHHHHH----HHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CC
T ss_pred CCCcc-cHHHHHH----HHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcccccc
Confidence 98643 1211111 0101110 0 000000000001111 111 11 1 478999999999 9
Q ss_pred cHHHHHHHHHHh
Q 026576 204 SIRYVLSQIDNC 215 (236)
Q Consensus 204 ~i~~L~~~Id~~ 215 (236)
+|++++..|.+.
T Consensus 202 gv~~lf~~l~~~ 213 (214)
T 2fh5_B 202 DIQDLEKWLAKI 213 (214)
T ss_dssp BCHHHHHHHHHH
T ss_pred ChHHHHHHHHHh
Confidence 999999998764
No 54
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.11 E-value=1.1e-05 Score=64.70 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=59.5
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh-cCCCEEEEeccccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-LELPHVNILSKMDLVT 147 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~-l~lP~InVlsK~DLl~ 147 (236)
+.|+|||||-+... +....- .+.. ++++++|+........ +..++..+..... -+.|.+.|+||+|+..
T Consensus 71 ~~l~Dt~G~~~~~~-------~~~~~~-~~~d-~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 71 LDILDTAGQEEYSA-------MRDQYM-RTGE-GFLCVFAINNSKSFAD-INLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEEECCC------------------C-TTCS-EEEEEEETTCHHHHHH-HHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEEECCChHHHHH-------HHHHhh-CcCC-EEEEEEECcCHHHHHH-HHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 67999999875322 111111 2233 5778888654322221 2222222222221 3799999999999975
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+. . ... ... ++...++ +.++++|+.+++++++++..|-+.+
T Consensus 141 ~~--~------~~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 141 RT--V------DTK------------QAH-------ELAKSYG-IPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CC--S------CHH------------HHH-------HHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cc--C------CHH------------HHH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 32 0 000 001 1122333 4799999999999999999887654
No 55
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.10 E-value=2.4e-05 Score=62.41 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=65.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc---chhhHHHHHHHHHHHH--hhcCCCEEEEecc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT---DVTKFISGCMASLSAM--VQLELPHVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~---dp~~~is~~l~sls~m--~~l~lP~InVlsK 142 (236)
.+.|+|||||-++.. ..+ ..+ .+.. ++++++|+..-. +...|-. +.--+... ..-+.|.+.|.||
T Consensus 75 ~~~i~Dt~G~~~~~~---~~~---~~~--~~~d-~~i~v~D~~~~~~~~~~~s~~~-l~~~l~~~~~~~~~~piilv~NK 144 (198)
T 3t1o_A 75 RFHLYTVPGQVFYNA---SRK---LIL--RGVD-GIVFVADSAPNRLRANAESMRN-MRENLAEYGLTLDDVPIVIQVNK 144 (198)
T ss_dssp EEEEEECCSCCSCSH---HHH---HHT--TTCC-EEEEEEECCGGGHHHHHHHHHH-HHHHHHHTTCCTTSSCEEEEEEC
T ss_pred EEEEEeCCChHHHHH---HHH---HHH--hcCC-EEEEEEECCcchhhHhHHHHHH-HHHHHHhhccccCCCCEEEEEEc
Confidence 368999999875321 111 122 2334 588999987211 1122111 10000000 1148999999999
Q ss_pred cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+|+.... ..+ .+.++...++...++++|+++++++++++..|-+.+
T Consensus 145 ~Dl~~~~---------~~~-------------------~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 145 RDLPDAL---------PVE-------------------MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp TTSTTCC---------CHH-------------------HHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred hhccccc---------CHH-------------------HHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 9996431 000 111334456666999999999999999999887643
No 56
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.09 E-value=1.6e-05 Score=65.27 Aligned_cols=117 Identities=14% Similarity=0.188 Sum_probs=69.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.|+|||||-+...... ..+ .+.. ++++++|+..-..... +..++-.+.....-+.|.+.|+||+|+.+
T Consensus 62 ~~~l~Dt~G~~~~~~~~~------~~~--~~~d-~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 62 KFNVWDTAGQEKKAVLKD------VYY--IGAS-GAILFFDVTSRITCQN-LARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp EEEEEEECSGGGTSCCCH------HHH--TTCS-EEEEEEETTCHHHHHT-HHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred EEEEEecCCchhhchHHH------HHh--hcCC-EEEEEEeCCCHHHHHH-HHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 378999999865332111 112 2334 5788999764322222 22333334444445799999999999975
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccccc
Q 026576 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGED 221 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed 221 (236)
.. +... . ...++.... ...++++|+++++++++++..|-+.+.....
T Consensus 132 ~~-~~~~------~-------------------~~~~~~~~~-~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 132 RQ-KISK------K-------------------LVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp ----CCH------H-------------------HHHHHTTTC-CCEEEEEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred cc-ccCH------H-------------------HHHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 43 1100 0 000112222 2589999999999999999999887655433
No 57
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.08 E-value=1.2e-05 Score=64.13 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=64.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~D 144 (236)
.+.++|||||-+.- .+.... -.+.. ++++++|+.. +..+-. .++..+... ...+.|.+.|+||+|
T Consensus 63 ~~~~~Dt~G~~~~~-------~~~~~~-~~~~d-~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 130 (186)
T 1ksh_A 63 KLNIWDVGGQKSLR-------SYWRNY-FESTD-GLIWVVDSAD---RQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130 (186)
T ss_dssp EEEEEEECCSHHHH-------TTGGGG-CTTCS-EEEEEEETTC---GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred EEEEEECCCCHhHH-------HHHHHH-hcCCC-EEEEEEECcC---HHHHHHHHHHHHHHHhChhcCCCcEEEEEeCcc
Confidence 46899999985421 111111 12344 5889999754 333322 122211111 124799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.+.. .. +.+.+.+.. ..+.. .-..++++|+++++++++++..|-+.+
T Consensus 131 l~~~~-~~--------~~~~~~~~~--------------~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 131 LPGAL-SC--------NAIQEALEL--------------DSIRS-HHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp STTCC-CH--------HHHHHHTTG--------------GGCCS-SCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCCC-CH--------HHHHHHhCh--------------hhccC-CceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 97542 11 111111100 00111 226899999999999999999987754
No 58
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.08 E-value=1.4e-05 Score=66.08 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=63.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+.-.... ..+ .+. -++++++|+. ++..|-... +........-+.|.+.|.||+|+
T Consensus 83 ~l~l~Dt~G~~~~~~~~~------~~~--~~~-d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 83 HLHIWDTAGQDDYDRLRP------LFY--PDA-SVLLLCFDVT---SPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEEEEC-----------------------CE-EEEEEEEETT---CHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGG
T ss_pred EEEEEECCCchhhhHHHH------HHh--ccC-CEEEEEEECc---CHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 367999999876422111 112 123 3688889965 455544321 11111112238999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .....+. ...... -.+ ....++...++...|+++|+++++++++++..|-+.+
T Consensus 151 ~~~~-~~~~~~~--------~~~~~~-v~~----~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 151 RKDK-SLVNKLR--------RNGLEP-VTY----HRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp GSCH-HHHHHHH--------HTTCCC-CCH----HHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hccc-hhhhhhc--------ccccCc-ccH----HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 8654 2221111 000000 000 1112333455667999999999999999999887654
No 59
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.07 E-value=2.5e-05 Score=63.50 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=61.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHH-HhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSA-MVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~-m~~l~lP~InVlsK~D 144 (236)
.+.++|||||-+. +...+. .++ +.. ++++++|+. ++..+-.. ++..+.. ...-+.|.+.|+||+|
T Consensus 74 ~~~i~Dt~G~~~~---~~~~~~---~~~--~~d-~iilv~D~~---~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 141 (192)
T 2b6h_A 74 CFTVWDVGGQDKI---RPLWRH---YFQ--NTQ-GLIFVVDSN---DRERVQESADELQKMLQEDELRDAVLLVFANKQD 141 (192)
T ss_dssp EEEEEECC--------CTTHHH---HHH--TCC-EEEEEEETT---CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred EEEEEECCCCHhH---HHHHHH---Hhc--cCC-EEEEEEECC---CHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC
Confidence 5689999998652 222222 232 233 578899975 34333322 2111111 1113799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.... ... .+...+.. ..... .-..++++|+++++++++++..|-+.+
T Consensus 142 l~~~~-~~~--------~i~~~~~~--------------~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 142 MPNAM-PVS--------ELTDKLGL--------------QHLRS-RTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp STTCC-CHH--------HHHHHTTG--------------GGCSS-CCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred CCCCC-CHH--------HHHHHhCc--------------ccccC-CceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 96532 111 11111110 00111 226799999999999999999887654
No 60
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.07 E-value=1.6e-05 Score=62.59 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=61.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh----cCCCEEEEeccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ----LELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~----l~lP~InVlsK~ 143 (236)
.+.++|||||-+.... . ...+ .+.. ++++++|+..-.... -+..++..+..... .+.|.+.|+||+
T Consensus 59 ~~~l~Dt~G~~~~~~~---~---~~~~--~~~d-~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 128 (182)
T 1ky3_A 59 TMQVWDTAGQERFQSL---G---VAFY--RGAD-CCVLVYDVTNASSFE-NIKSWRDEFLVHANVNSPETFPFVILGNKI 128 (182)
T ss_dssp EEEEECCC----------------CCS--TTCC-EEEEEEETTCHHHHH-THHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred EEEEEECCCChHhhhh---h---HHHh--hcCC-EEEEEEECCChHHHH-HHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence 4689999997653211 0 0111 2333 578889975422111 12222222332222 689999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
|+....... . .. ... ++........++++|+.+++++++++..|-+.+
T Consensus 129 Dl~~~~~~v----~--~~------------~~~-------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 129 DAEESKKIV----S--EK------------SAQ-------ELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp TSCGGGCCS----C--HH------------HHH-------HHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ccccccccC----C--HH------------HHH-------HHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 996432100 0 00 001 111223457899999999999999999887643
No 61
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.07 E-value=1.2e-05 Score=69.80 Aligned_cols=62 Identities=11% Similarity=0.287 Sum_probs=33.1
Q ss_pred CCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH
Q 026576 133 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 212 (236)
Q Consensus 133 ~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I 212 (236)
+.|.|.|+||+|+++.. ++..+. +.+.+.+..++ +.++++|+.+++++..+...|
T Consensus 144 ~~pvi~V~nK~D~~~~~-e~~~~~-----------------------~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l 198 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPE-ECQQFK-----------------------KQIMKEIQEHK-IKIYEFPETDDEEENKLVKKI 198 (274)
T ss_dssp TSCEEEEESSGGGSCHH-HHHHHH-----------------------HHHHHHHHHTT-CCCCCC-----------CHHH
T ss_pred cCCEEEEEeccCCCCHH-HHHHHH-----------------------HHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHH
Confidence 89999999999997644 222111 11222333333 467888999999999999999
Q ss_pred HHhhccc
Q 026576 213 DNCIQWG 219 (236)
Q Consensus 213 d~~~~y~ 219 (236)
-+.+++.
T Consensus 199 ~~~~p~~ 205 (274)
T 3t5d_A 199 KDRLPLA 205 (274)
T ss_dssp HHTCSEE
T ss_pred hcCCCcE
Confidence 9988774
No 62
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.07 E-value=9.5e-06 Score=65.74 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=67.8
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.-++|||||-+.-.... ..+ .+.. ++++++|+. ++..+-.. ++-.+... .-+.|.+.|.||+|+
T Consensus 70 ~~i~Dt~G~~~~~~~~~------~~~--~~~~-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 70 LQLCDTAGQDEFDKLRP------LCY--TNTD-IFLLCFSVV---SPSSFQNVSEKWVPEIRCH-CPKAPIILVGTQSDL 136 (201)
T ss_dssp EEEEECCCSTTCSSSGG------GGG--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHHHH-CSSSCEEEEEECGGG
T ss_pred EEEEECCCCHHHHHHhH------hhc--CCCc-EEEEEEECC---CHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHhh
Confidence 44999999965322111 112 2334 588899975 44444332 22222221 238999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.........+.... .... . . ....++...++...|+++|+++++++++++..|-+.+
T Consensus 137 ~~~~~~~~~~~~~~--------~~~v--~-~---~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 137 REDVKVLIELDKCK--------EKPV--P-E---EAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp GGCHHHHHHHHTTT--------CCCC--C-H---HHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhchhhhhhhcccc--------cccC--C-H---HHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 76531111111000 0000 0 0 0111233345666899999999999999999887654
No 63
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.07 E-value=1.4e-05 Score=63.96 Aligned_cols=113 Identities=12% Similarity=0.024 Sum_probs=62.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl 146 (236)
.+.++|||||-+.-. ..+ ..+ .+.. ++++++|+..-....... .++..+... ..-+.|.+.|+||+|+.
T Consensus 66 ~~~i~Dt~G~~~~~~---~~~---~~~--~~~d-~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 66 RFLMWDIGGQESLRS---SWN---TYY--TNTE-FVIVVVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp EEEEEEESSSGGGTC---GGG---GGG--TTCC-EEEEEEETTCTTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEECCCCHhHHH---HHH---HHh--ccCC-EEEEEEECCCHHHHHHHH-HHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 578999999855221 111 112 2334 689999976432222211 122111111 13589999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
... .. +.+...+.. ..... .-..++++|+++++++++++..|-+
T Consensus 136 ~~~-~~--------~~i~~~~~~--------------~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 136 ECM-TV--------AEISQFLKL--------------TSIKD-HQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp TCC-CH--------HHHHHHTTG--------------GGCCS-SCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred cCC-CH--------HHHHHHhCc--------------ccccC-CceEEEEccCCCCcCHHHHHHHHHh
Confidence 532 11 111010000 00111 1258999999999999999998754
No 64
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.07 E-value=3e-05 Score=63.42 Aligned_cols=110 Identities=16% Similarity=0.275 Sum_probs=66.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHH-HHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+.|+|||||-+. +.+. ..+ .+.. ++++++|+. ++..|-. .++-.+.....-+.|.+.|.||+|
T Consensus 79 ~l~i~Dt~G~~~~-------~~~~~~~~--~~~d-~iilv~D~~---~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D 145 (201)
T 2hup_A 79 KLQIWDTAGQERF-------RTITQSYY--RSAN-GAILAYDIT---KRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145 (201)
T ss_dssp EEEEECCTTCGGG-------HHHHHHHH--TTCS-EEEEEEETT---BHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEECCCcHhH-------HHHHHHHH--hhCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCc
Confidence 5789999998542 1222 223 2344 588899964 4444322 222222222235799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.... .+ . .+ .+.++...++...++++|+++++++++++..|-+.+
T Consensus 146 l~~~~-~v----~--~~-------------------~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 146 LSELR-EV----S--LA-------------------EAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp CGGGC-CS----C--HH-------------------HHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccccc-cc----C--HH-------------------HHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 96432 11 0 00 011222344555899999999999999999887654
No 65
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.07 E-value=4.3e-05 Score=59.39 Aligned_cols=111 Identities=9% Similarity=0.157 Sum_probs=63.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh--cCCCEEEEeccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ--LELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~--l~lP~InVlsK~ 143 (236)
.+.++|||||-+.. .. .-..++.. . ++++++|+. ++..+- ..++..+..... -+.|.+.|+||+
T Consensus 52 ~~~~~Dt~G~~~~~---~~---~~~~~~~~--~-~~i~v~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~ 119 (172)
T 2erx_A 52 TLQITDTTGSHQFP---AM---QRLSISKG--H-AFILVYSIT---SRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC 119 (172)
T ss_dssp EEEEEECCSCSSCH---HH---HHHHHHHC--S-EEEEEEETT---CHHHHHTTHHHHHHHHHHHC---CCCEEEEEECG
T ss_pred EEEEEECCCchhhH---HH---HHHhcccC--C-EEEEEEECc---CHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcc
Confidence 36899999976521 11 11223332 3 578888876 333321 112211211111 379999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
|+.+.. ++.. . .... +...++ ..++++|+.+++++++++..|-+...
T Consensus 120 Dl~~~~-~v~~------~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 120 DESPSR-EVQS------S------------EAEA-------LARTWK-CAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp GGGGGC-CSCH------H------------HHHH-------HHHHHT-CEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred cccccc-ccCH------H------------HHHH-------HHHHhC-CeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 997543 1100 0 0001 111223 58999999999999999999987653
No 66
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.07 E-value=4.7e-05 Score=61.10 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=66.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh--------cCCCEE
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ--------LELPHV 137 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~--------l~lP~I 137 (236)
.+.|+|||||-+.-. ..+ ..+ .+.. ++++++|+.. +..|-. .++..+..... -+.|.|
T Consensus 64 ~~~i~Dt~G~~~~~~---~~~---~~~--~~~d-~ii~v~D~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pii 131 (199)
T 4bas_A 64 AFTVFDMGGAKKFRG---LWE---TYY--DNID-AVIFVVDSSD---HLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFL 131 (199)
T ss_dssp EEEEEEECCSGGGGG---GGG---GGC--TTCS-EEEEEEETTC---GGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEE
T ss_pred EEEEEECCCCHhHHH---HHH---HHH--hcCC-EEEEEEECCc---HHHHHHHHHHHHHHHhChhhhhcccccCCCCEE
Confidence 578999999855321 111 112 2344 6899999764 333322 22222222211 189999
Q ss_pred EEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 138 NILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 138 nVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.|+||+|+.... ... .+...+. +..+... .-..++++|+++++++++++..|-+.+
T Consensus 132 lv~NK~Dl~~~~-~~~--------~~~~~~~-------------~~~~~~~-~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 132 FFANKMDAAGAK-TAA--------ELVEILD-------------LTTLMGD-HPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp EEEECTTSTTCC-CHH--------HHHHHHT-------------HHHHHTT-SCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEECcCCCCCC-CHH--------HHHHHhc-------------chhhccC-CeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 999999997653 111 1111110 0011122 236899999999999999999987754
No 67
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.07 E-value=1.5e-05 Score=63.92 Aligned_cols=111 Identities=14% Similarity=0.251 Sum_probs=66.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+... .. -..++ +.. ++++++|+.. +..+ +..++..+.....-+.|.+.|+||+|+
T Consensus 66 ~~~i~Dt~G~~~~~~---~~---~~~~~--~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl 133 (196)
T 3tkl_A 66 KLQIWDTAGQERFRT---IT---SSYYR--GAH-GIIVVYDVTD---QESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133 (196)
T ss_dssp EEEEEEECCSGGGCT---TH---HHHHT--TCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEECCCcHhhhh---hH---HHHHh--hCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 367899999765322 11 12232 233 5888999764 3322 233333333333448999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.+.. .... . .. . ++...++ +.++++|+.+++++++++..+-+.+.
T Consensus 134 ~~~~-~~~~------~------------~~----~---~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 134 TTKK-VVDY------T------------TA----K---EFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp TTTC-CSCH------H------------HH----H---HHHHHTT-CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccc-ccCH------H------------HH----H---HHHHHcC-CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 7543 1100 0 00 1 1112222 58999999999999999988877543
No 68
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.07 E-value=1.4e-05 Score=63.65 Aligned_cols=125 Identities=16% Similarity=0.268 Sum_probs=66.8
Q ss_pred CEEEEeCCCceeeeeccchH----HHHH-HHHhh-CCCceEEEEeecCCCccch-hhHHHH-----HHHHHHHHhhcCCC
Q 026576 68 DYLVFDCPGQIELFTHVPVL----RNFV-DHLKS-RNFNVCAVYLLDSQFITDV-TKFISG-----CMASLSAMVQLELP 135 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~----~~iv-~~L~~-~~~~~~~V~LiD~~~~~dp-~~~is~-----~l~sls~m~~l~lP 135 (236)
++.++||||...+..+...+ +.+. ..+.. .+.-.++++++|+....+. ..+... -.-........+.|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 57899999965544333222 2221 12222 2222467888887543322 111110 00011222346899
Q ss_pred EEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHH
Q 026576 136 HVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 136 ~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id 213 (236)
.+.|.||+|+.....+ ....+...+.. .|. -..++++|+++++++++++..|-
T Consensus 125 iilv~nK~Dl~~~~~~-------~~~~~~~~~~~------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 179 (190)
T 2cxx_A 125 TIVAVNKLDKIKNVQE-------VINFLAEKFEV------------------PLSEIDKVFIPISAKFGDNIERLKNRIF 179 (190)
T ss_dssp EEEEEECGGGCSCHHH-------HHHHHHHHHTC------------------CGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred eEEEeehHhccCcHHH-------HHHHHHHHhhh------------------hhhccCCcEEEEecCCCCCHHHHHHHHH
Confidence 9999999999754200 00011111100 000 14689999999999999999988
Q ss_pred Hhhc
Q 026576 214 NCIQ 217 (236)
Q Consensus 214 ~~~~ 217 (236)
+.+.
T Consensus 180 ~~~~ 183 (190)
T 2cxx_A 180 EVIR 183 (190)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7653
No 69
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.06 E-value=1.8e-05 Score=62.43 Aligned_cols=111 Identities=14% Similarity=0.240 Sum_probs=66.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.++|||||-+.- ...+ ..++ +.. ++++++|+. ++..+ +..++..+.....-+.|.+.|+||+|+
T Consensus 62 ~~~i~Dt~G~~~~~---~~~~---~~~~--~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 129 (181)
T 2efe_B 62 KFEIWDTAGQERYH---SLAP---MYYR--GAA-AAIIVFDVT---NQASFERAKKWVQELQAQGNPNMVMALAGNKSDL 129 (181)
T ss_dssp EEEEEECCCSGGGG---GGTH---HHHT--TCS-EEEEEEETT---CHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEeCCCChhhh---hhhH---HHhc--cCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcc
Confidence 46899999986522 1111 2232 334 578899965 33333 222332333222248899999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.... +.. .+ ... ++...++ +.++++|+++++++++++..|-+.+.
T Consensus 130 ~~~~-~~~------~~------------~~~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 130 LDAR-KVT------AE------------DAQ-------TYAQENG-LFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp TTTC-CSC------HH------------HHH-------HHHHHTT-CEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred cccc-cCC------HH------------HHH-------HHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6533 110 00 001 1112233 57999999999999999999987653
No 70
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.06 E-value=6.2e-06 Score=66.51 Aligned_cols=121 Identities=12% Similarity=0.135 Sum_probs=67.8
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL 145 (236)
..|+|||||-+.-. ..+ ..+ .+.. ++++++|+. ++..|-.. ++-.+... .-+.|.+.|.||+|+
T Consensus 68 ~~i~D~~G~~~~~~---~~~---~~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl 134 (194)
T 2atx_A 68 LGLYDTAGQEDYDR---LRP---LSY--PMTD-VFLICFSVV---NPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDL 134 (194)
T ss_dssp EEEECCCCSSSSTT---TGG---GGC--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTS
T ss_pred EEEEECCCCcchhH---HHH---Hhc--CCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhh
Confidence 46899999865321 111 112 2334 578889964 44444332 22222211 128999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... ...+.+.. .....- .. ....++...++...|+++|+++++++++++..|-+.+
T Consensus 135 ~~~~-~~~~~~~~--------~~~~~v-~~----~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 135 RDDP-KTLARLND--------MKEKPI-CV----EQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp TTCH-HHHHHHTT--------TTCCCC-CH----HHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccc-cchhhccc--------ccCccc-CH----HHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 8654 22111110 000000 00 1112333445666899999999999999999987654
No 71
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.06 E-value=3.4e-05 Score=60.90 Aligned_cols=110 Identities=11% Similarity=0.202 Sum_probs=64.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh-cCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ-LELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~-l~lP~InVlsK~D 144 (236)
.+.|+|||||-+.. ... -..++. .. ++++++|+.. +..+- ..++..+..... .+.|.+.|+||+|
T Consensus 67 ~~~l~Dt~G~~~~~---~~~---~~~~~~--~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 134 (187)
T 2a9k_A 67 QIDILDTAGQEDYA---AIR---DNYFRS--GE-GFLCVFSITE---MESFAATADFREQILRVKEDENVPFLLVGNKSD 134 (187)
T ss_dssp EEEEEECCCTTCCH---HHH---HHHHHH--CS-EEEEEEETTC---HHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGG
T ss_pred EEEEEECCCCcccH---HHH---HHHhcc--CC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 46799999986532 111 122322 23 5788888753 33322 222222222222 3899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.... +. . .. .+.++...++ ..++++|+++++++++++..|-+.+
T Consensus 135 l~~~~-~~----~--~~-------------------~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 135 LEDKR-QV----S--VE-------------------EAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp GGGGC-CS----C--HH-------------------HHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccC-cc----C--HH-------------------HHHHHHHHcC-CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 96532 11 0 00 0011222334 4899999999999999999887654
No 72
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.06 E-value=1.2e-05 Score=65.79 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=68.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+-|+|||||-+.-.... ..+ .+.. ++++++|+. ++..|-.. ++-.+.... -+.|.+.|.||+|
T Consensus 58 ~~~i~Dt~G~~~~~~~~~------~~~--~~~d-~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D 124 (212)
T 2j0v_A 58 NLGLWDTAGQEDYSRLRP------LSY--RGAD-IFVLAFSLI---SKASYENVLKKWMPELRRFA-PNVPIVLVGTKLD 124 (212)
T ss_dssp EEEEECCCCCCCCCC--C------GGG--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHH
T ss_pred EEEEEECCCcHHHHHHHH------hhc--cCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHH
Confidence 468999999965322111 112 2334 578889965 44444332 222222221 2899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+......... -. . .+ . .....++...++...|+++|+.+++++++++..|-+.+.
T Consensus 125 l~~~~~~~~~-~~-~------~v---~-------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 125 LRDDKGYLAD-HT-N------VI---T-------STQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp HHTCHHHHHT-CS-S------CC---C-------HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhhCcccccc-cc-C------CC---C-------HHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHh
Confidence 9765411110 00 0 00 0 001112334456678999999999999999998877553
No 73
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.06 E-value=7.1e-06 Score=79.73 Aligned_cols=121 Identities=13% Similarity=0.239 Sum_probs=67.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc--cchhhHHHHHHHHHHHHhhcCCC-EEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQLELP-HVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~--~dp~~~is~~l~sls~m~~l~lP-~InVlsK~D 144 (236)
.+.|+|||||.. ..+.....+ .+.. ++++++|+..- ...-.......-.+.....+++| .|.|+||+|
T Consensus 246 ~~~iiDTPG~e~------f~~~~~~~~--~~aD-~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiD 316 (611)
T 3izq_1 246 NFTIVDAPGHRD------FVPNAIMGI--SQAD-MAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD 316 (611)
T ss_dssp EEEEEECCSSSC------HHHHHTTTS--SCCS-EEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTT
T ss_pred eEEEEECCCCcc------cHHHHHHHH--hhcC-ceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccc
Confidence 689999999844 223332223 2344 68999998641 00000011111123334456877 777899999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHH-------------
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY------------- 207 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~------------- 207 (236)
+...... .+.+....+.+++...+. +.|+|+|+.+++++..
T Consensus 317 l~~~~~~----------------------~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g 374 (611)
T 3izq_1 317 NVDWSQQ----------------------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNG 374 (611)
T ss_dssp TTTTCHH----------------------HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCS
T ss_pred ccchhHH----------------------HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccC
Confidence 9752200 111122222233333343 7899999999999984
Q ss_pred --HHHHHHHhhccc
Q 026576 208 --VLSQIDNCIQWG 219 (236)
Q Consensus 208 --L~~~Id~~~~y~ 219 (236)
|+..++......
T Consensus 375 ~~L~~~L~~l~~~~ 388 (611)
T 3izq_1 375 PNLMSTLENAAFKI 388 (611)
T ss_dssp CCHHHHHTTSCCCC
T ss_pred CcHHHHHHHHhhcc
Confidence 566777665443
No 74
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.05 E-value=3e-05 Score=60.97 Aligned_cols=113 Identities=10% Similarity=0.216 Sum_probs=66.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh----cCCCEEEEeccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ----LELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~----l~lP~InVlsK~ 143 (236)
.+.++|||||-+. +.+.... -.+.. ++++++|+..-..... +..++-.+..... .+.|.+.|+||+
T Consensus 57 ~~~i~Dt~G~~~~-------~~~~~~~-~~~~~-~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 126 (177)
T 1wms_A 57 TMQIWDTAGQERF-------RSLRTPF-YRGSD-CCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKI 126 (177)
T ss_dssp EEEEEECCCCGGG-------HHHHGGG-GTTCS-EEEEEEETTCHHHHHT-HHHHHHHHHHHHTCSCTTTSCEEEEEECT
T ss_pred EEEEEeCCCchhh-------hhhHHHH-HhcCC-EEEEEEECcCHHHHHH-HHHHHHHHHHHccccccCCCcEEEEEECC
Confidence 5789999997542 1222222 12333 5788888754322111 2223333333332 678999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
|+.... . ..+ ... ++........++++|+.+++++++++..|-+.+-
T Consensus 127 Dl~~~~--~------~~~------------~~~-------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 127 DISERQ--V------STE------------EAQ-------AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TCSSCS--S------CHH------------HHH-------HHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccc--c------CHH------------HHH-------HHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 997322 0 000 000 1112234478999999999999999998877553
No 75
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.05 E-value=7.6e-06 Score=75.84 Aligned_cols=146 Identities=12% Similarity=0.160 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHHhh----HHH---HHHHhc---ccCCCCEEEEeCCCce---------eeeeccchHHHHHHHHhhCC
Q 026576 38 PNGGLIYCMEHLEDNL----DDW---LAEELD---NYLDDDYLVFDCPGQI---------ELFTHVPVLRNFVDHLKSRN 98 (236)
Q Consensus 38 PNGalv~~me~l~~n~----~~w---l~~~i~---~~~~~~Yil~D~PGQi---------Elf~~~~~~~~iv~~L~~~~ 98 (236)
||-|.-.-++.+...- .+. ..+.+. ......|.|+|||||. |-|.. .+-...+...
T Consensus 184 ~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~----~~~~~~~~~a- 258 (436)
T 2hjg_A 184 PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSV----LRALKAIDRS- 258 (436)
T ss_dssp TTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHH----HHHHHHHHHC-
T ss_pred CCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHH----HHHHHHHHhC-
Confidence 6777777777776321 000 000000 1112358999999984 43321 1122334333
Q ss_pred CceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHH
Q 026576 99 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKL 178 (236)
Q Consensus 99 ~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l 178 (236)
. ++++++|+..-....+. -+ +......+.|.|.|+||+|+.+.. .. .+.++
T Consensus 259 -d-~~llv~D~~~~~s~~~~---~~--~~~~~~~~~~iiiv~NK~Dl~~~~-~~---------------------~~~~~ 309 (436)
T 2hjg_A 259 -E-VVAVVLDGEEGIIEQDK---RI--AGYAHEAGKAVVIVVNKWDAVDKD-ES---------------------TMKEF 309 (436)
T ss_dssp -S-EEEEEEETTTCCCHHHH---HH--HHHHHHTTCEEEEEEECGGGSCCC-TT---------------------HHHHH
T ss_pred -C-EEEEEEcCCcCCcHHHH---HH--HHHHHHcCCcEEEEEECccCCCcc-hH---------------------HHHHH
Confidence 3 68899998653333321 11 112234689999999999998643 11 01111
Q ss_pred HHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 179 NKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 179 ~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.+.+.+.+.......++++|+++++++.+++..+.+...
T Consensus 310 ~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 310 EENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp HHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence 222223333334578999999999999999998887654
No 76
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.05 E-value=1.4e-05 Score=64.74 Aligned_cols=110 Identities=13% Similarity=0.220 Sum_probs=64.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHh----hcCCCEEEEec
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV----QLELPHVNILS 141 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~----~l~lP~InVls 141 (236)
.+.|+|||||-+.-.... ..+ .+.. ++++++|+.. +..+ +..++..+.... ..+.|.+.|+|
T Consensus 58 ~~~l~Dt~G~~~~~~~~~------~~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~n 125 (207)
T 1vg8_A 58 TMQIWDTAGQERFQSLGV------AFY--RGAD-CCVLVFDVTA---PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125 (207)
T ss_dssp EEEEEEECSSGGGSCSCC------GGG--TTCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEE
T ss_pred EEEEEeCCCcHHHHHhHH------HHH--hCCc-EEEEEEECCC---HHHHHHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 468999999865332111 112 2334 5888999753 3322 122222222222 14889999999
Q ss_pred ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
|+|+.... .. .+ ... ++........++++|++++++++.++..|-+.+
T Consensus 126 K~Dl~~~~-~~-------~~------------~~~-------~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 126 KIDLENRQ-VA-------TK------------RAQ-------AWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp CTTSSCCC-SC-------HH------------HHH-------HHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCcccc-cC-------HH------------HHH-------HHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99997322 00 00 000 111113346899999999999999999987754
No 77
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.03 E-value=2.9e-05 Score=68.63 Aligned_cols=148 Identities=14% Similarity=0.204 Sum_probs=82.7
Q ss_pred CC-ChHHHHHHHHHHHHh-hHHHHHHHhccc----------CCCCEEEEeCCCce-eeeeccchHHHHHHH-Hhh-CCCc
Q 026576 36 LG-PNGGLIYCMEHLEDN-LDDWLAEELDNY----------LDDDYLVFDCPGQI-ELFTHVPVLRNFVDH-LKS-RNFN 100 (236)
Q Consensus 36 LG-PNGalv~~me~l~~n-~~~wl~~~i~~~----------~~~~Yil~D~PGQi-Elf~~~~~~~~iv~~-L~~-~~~~ 100 (236)
+| ||.|.-+-++.|... + .....+.+.. ...++.++||||+. +.+ ..+.+.+.. ..+ ...-
T Consensus 14 vG~~nvGKSTLln~L~g~~~-~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~---~~l~~~~~~~~~~~l~~~ 89 (301)
T 1ega_A 14 VGRPNVGKSTLLNKLLGQKI-SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK---RAINRLMNKAASSSIGDV 89 (301)
T ss_dssp ECSSSSSHHHHHHHHHTCSE-EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH---HHHHHHHTCCTTSCCCCE
T ss_pred ECCCCCCHHHHHHHHHCCCc-cccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch---hhHHHHHHHHHHHHHhcC
Confidence 45 455788888887743 2 1111111110 12257899999975 211 112211111 111 1111
Q ss_pred eEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026576 101 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180 (236)
Q Consensus 101 ~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~ 180 (236)
=++++++|+..++.....+ .....+.+.|.|.|+||+|+.+....+.+
T Consensus 90 D~vl~Vvd~~~~~~~~~~i------~~~l~~~~~P~ilvlNK~D~~~~~~~~~~-------------------------- 137 (301)
T 1ega_A 90 ELVIFVVEGTRWTPDDEMV------LNKLREGKAPVILAVNKVDNVQEKADLLP-------------------------- 137 (301)
T ss_dssp EEEEEEEETTCCCHHHHHH------HHHHHSSSSCEEEEEESTTTCCCHHHHHH--------------------------
T ss_pred CEEEEEEeCCCCCHHHHHH------HHHHHhcCCCEEEEEECcccCccHHHHHH--------------------------
Confidence 2578889986633322222 12223468999999999999752211111
Q ss_pred HHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026576 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
.+.++-+.++...++|+|+.+++++..|+..|-+.+..+
T Consensus 138 ~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 138 HLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred HHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcC
Confidence 111223345666899999999999999999999876544
No 78
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.03 E-value=1.8e-05 Score=62.41 Aligned_cols=111 Identities=15% Similarity=0.266 Sum_probs=63.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.++|||||-+.-.. ....++ +.. ++++++|+.. +..+ +..++..+......+.|.+.|+||+|+
T Consensus 61 ~~~~~Dt~G~~~~~~~------~~~~~~--~~d-~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 128 (180)
T 2g6b_A 61 KLQMWDTAGQERFRSV------THAYYR--DAH-ALLLLYDVTN---KASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS 128 (180)
T ss_dssp EEEEEECCCC--------------CCGG--GCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECCST
T ss_pred EEEEEeCCCcHHHHHH------HHHHcc--CCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 4678999998653211 111122 233 5788999754 3322 223333333333368999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.+.. ... .+ ...++ ...++ +.++++|+++++++++++..|-+.+.
T Consensus 129 ~~~~-~~~------~~------------~~~~~-------~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 129 AHER-VVK------RE------------DGEKL-------AKEYG-LPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp TSCC-CSC------HH------------HHHHH-------HHHHT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred Cccc-ccC------HH------------HHHHH-------HHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 7543 110 00 00111 11223 47999999999999999999877653
No 79
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.03 E-value=1.6e-05 Score=73.13 Aligned_cols=113 Identities=18% Similarity=0.275 Sum_probs=61.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCC-CEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLEL-PHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~l-P~InVlsK~DL 145 (236)
.+.++|||||-. ..+.....+ .... ++++++|+..- ..+..+-... ....++. |.|.|+||+|+
T Consensus 82 ~i~iiDtPGh~~------f~~~~~~~~--~~~D-~~ilVvda~~g~~~~qt~e~l~-----~~~~l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 82 RVSFVDSPGHET------LMATMLSGA--SLMD-GAILVIAANEPCPQPQTKEHLM-----ALEILGIDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEEECSSHHH------HHHHHHTTC--SCCS-EEEEEEETTSCSSCHHHHHHHH-----HHHHTTCCCEEEEEECTTS
T ss_pred EEEEEECCCHHH------HHHHHHHhH--hhCC-EEEEEEECCCCCCCchhHHHHH-----HHHHcCCCeEEEEEEccCC
Confidence 589999999743 122222222 2334 58999998742 2444432211 1123565 68899999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.... .... .+. .+.+++..+. -..++|+|+.++++++.|+..|.+.+.-
T Consensus 148 ~~~~-~~~~-------------------~~~----~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 148 VDEK-QAEE-------------------NYE----QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp SCTT-TTTT-------------------HHH----HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred CCHH-HHHH-------------------HHH----HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 7643 1110 000 1112333332 3789999999999999999999986653
No 80
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.03 E-value=3.8e-05 Score=62.16 Aligned_cols=113 Identities=13% Similarity=0.186 Sum_probs=66.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||-+. +.. ....++.. . ++++++|+..-..... +..++..+.....-+.|.+.|+||+|+..
T Consensus 76 ~l~l~Dt~G~~~~---~~~---~~~~~~~~--d-~iilV~D~~~~~s~~~-~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 76 RLQIWDTAGQERF---NSI---TSAYYRSA--K-GIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp EEEEEEECCSGGG---HHH---HHHHHHHC--S-EEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEeCCCcHHH---HHH---HHHHhcCC--C-EEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 4688999997542 111 12233332 3 5788999754322211 22232223333334899999999999964
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.. ++ . .+ .. + ++...+....++++|+++++++++++..|-+.+
T Consensus 146 ~~-~v----~--~~------------~~----~---~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 146 DR-EI----T--RQ------------QG----E---KFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp GC-CS----C--HH------------HH----H---HHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cc-cc----C--HH------------HH----H---HHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 32 11 0 00 00 1 122233447899999999999999999887643
No 81
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.02 E-value=4.5e-05 Score=61.68 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=63.9
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHh-hcCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV-QLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~-~l~lP~InVlsK~DL 145 (236)
+.++|||||.+ +... -..++.. . ++++++|+.. +..+- ..++..+.... .-+.|.+.|.||+|+
T Consensus 78 ~~l~Dt~G~~~----~~~~---~~~~~~~--d-~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 144 (196)
T 2atv_A 78 MEILDTAGQED----TIQR---EGHMRWG--E-GFVLVYDITD---RGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144 (196)
T ss_dssp EEEEECCCCCC----CHHH---HHHHHHC--S-EEEEEEETTC---HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred EEEEECCCCCc----ccch---hhhhccC--C-EEEEEEECcC---HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccc
Confidence 67899999987 1111 1223222 3 5788899753 33332 22222222222 258999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc-cHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~-~i~~L~~~Id~~~ 216 (236)
.... +. . .. ...++ ...++ ..|+++|+.+++ ++++++..|-+.+
T Consensus 145 ~~~~-~v----~--~~------------~~~~~-------~~~~~-~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 145 DHSR-QV----S--TE------------EGEKL-------ATELA-CAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp GGGC-CS----C--HH------------HHHHH-------HHHHT-SEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred cccc-cc----C--HH------------HHHHH-------HHHhC-CeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 6532 11 0 00 00111 11222 589999999999 9999999887654
No 82
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.02 E-value=3.7e-05 Score=61.72 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=66.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh---cCCCEEEEec
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ---LELPHVNILS 141 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~---l~lP~InVls 141 (236)
..+.|+|||||-++-.. .+ ..++ +.. ++++++|+.. +..+-. .++..+..... -+.|.+.|+|
T Consensus 67 ~~~~l~Dt~G~~~~~~~---~~---~~~~--~~d-~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~piilv~n 134 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNL---WE---HYYK--EGQ-AIIFVIDSSD---RLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134 (190)
T ss_dssp CEEEEEEECCSTTTGGG---GG---GGGG--GCS-EEEEEEETTC---HHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEE
T ss_pred EEEEEEECCCCHHHHHH---HH---HHHh--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHhChhhccCCCeEEEEEe
Confidence 35789999998663211 11 1122 233 5889999754 333322 22222222222 4899999999
Q ss_pred ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
|+|+.... ..+ .+...+ + +..+. -..++++|+++++++++++..|.+.+.
T Consensus 135 K~Dl~~~~-~~~--------~~~~~~----------------~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 135 KMDLRDAV-TSV--------KVSQLL----------------C-LENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp CTTSTTCC-CHH--------HHHHHH----------------T-GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CcCcccCC-CHH--------HHHHHh----------------C-hhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 99997532 111 110000 0 11221 368999999999999999999987653
No 83
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.01 E-value=1.8e-05 Score=61.58 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=65.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.++|||||-+.-. ..+ ..++ +.. ++++++|+.. +..+ +..++..+.....-+.|.+.|+||+|+
T Consensus 53 ~~~l~D~~G~~~~~~---~~~---~~~~--~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 120 (170)
T 1g16_A 53 KLQIWDTAGQERFRT---ITT---AYYR--GAM-GIILVYDITD---ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120 (170)
T ss_dssp EEEEECCTTGGGTSC---CCH---HHHT--TEE-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEeCCCChhhhh---hHH---HHhc--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence 468899999865322 111 1232 233 6888999753 3322 222333333333348999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
..+. . . .+ ...+ +...++ +.++++|+++++++++++..|-+.+.
T Consensus 121 ~~~~--~----~--~~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 121 ETRV--V----T--AD------------QGEA-------LAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp TTCC--S----C--HH------------HHHH-------HHHHHT-CCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CcCc--c----C--HH------------HHHH-------HHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4322 0 0 00 0011 112223 47999999999999999999887653
No 84
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.00 E-value=1.5e-05 Score=74.27 Aligned_cols=120 Identities=11% Similarity=0.137 Sum_probs=71.2
Q ss_pred CCEEEEeCCCceeee-----eccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026576 67 DDYLVFDCPGQIELF-----THVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNIL 140 (236)
Q Consensus 67 ~~Yil~D~PGQiElf-----~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVl 140 (236)
..+.|+||||..+-- .......+-+..+... . ++++++|+..- ......+. ......+.|.|.|+
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~a--d-~~llviD~~~~~~~~~~~~~------~~~~~~~~~~ilv~ 313 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRS--E-VVAVVLDGEEGIIEQDKRIA------GYAHEAGKAVVIVV 313 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHC--S-EEEEEEETTTCCCHHHHHHH------HHHHHTTCEEEEEE
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhC--C-EEEEEEeCCCCcCHHHHHHH------HHHHHcCCCEEEEE
Confidence 358999999953210 1111122223344333 3 57888998652 22222222 22334789999999
Q ss_pred cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
||+|+.+... . ...++.+.+.+.+...+...++++|+++++++.+++..|.+++.
T Consensus 314 NK~Dl~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 314 NKWDAVDKDE-S---------------------TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp ECGGGSCCCS-S---------------------HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred EChhcCCCch-H---------------------HHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 9999986431 0 01111122223333445578999999999999999999988653
No 85
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.00 E-value=2.4e-05 Score=60.76 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=64.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.++|||||-+. +...+ ..++ +.. ++++++|+.. +..+- ..++..+.....-.+|.+.|.||+|+
T Consensus 56 ~~~~~D~~G~~~~---~~~~~---~~~~--~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl 123 (170)
T 1r2q_A 56 KFEIWDTAGQERY---HSLAP---MYYR--GAQ-AAIVVYDITN---EESFARAKNWVKELQRQASPNIVIALSGNKADL 123 (170)
T ss_dssp EEEEEEECCSGGG---GGGHH---HHHT--TCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEeCCCcHHh---hhhhH---Hhcc--CCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence 4689999998652 22211 2232 334 5788999753 33322 22322232222347889999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .. . .+ ... ++...++ ..++++|+++++++++++..|-+.+
T Consensus 124 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 124 ANKR-AV----D--FQ------------EAQ-------SYADDNS-LLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp GGGC-CS----C--HH------------HHH-------HHHHHTT-CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred cccc-cc----C--HH------------HHH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6432 11 0 00 001 1112223 5899999999999999999987755
No 86
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.00 E-value=3.6e-05 Score=59.89 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=57.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~D 144 (236)
...++|||||-+.-... + ..++ +.. ++++++|.. ++..|-. .++..+... ..-+.|.+.|.||+|
T Consensus 50 ~~~i~D~~g~~~~~~~~---~---~~~~--~~~-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 117 (166)
T 3q72_A 50 SLMVYDIWEQDGGRWLP---G---HCMA--MGD-AYVIVYSVT---DKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 117 (166)
T ss_dssp EEEEEECC-----------------------CC-EEEEEEETT---CHHHHHHHHHHHHHHHHCC---CCCEEEEEECTT
T ss_pred EEEEEECCCCccchhhh---h---hhhh--hCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccc
Confidence 35789999987632211 1 1121 233 577788865 4444332 222222111 124799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.+.. +... + . ... +...++ ..++++|+++++++++++..+-+.+
T Consensus 118 l~~~~-~~~~------~------------~----~~~---~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 118 LVRSR-EVSV------D------------E----GRA---CAVVFD-CKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp CCSSC-CSCH------H------------H----HHH---HHHHTT-CEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ccccc-ccCH------H------------H----HHH---HHHHhC-CcEEEeccCCCCCHHHHHHHHHHHH
Confidence 97543 1100 0 0 011 111223 5899999999999999999987654
No 87
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.00 E-value=4.3e-05 Score=59.60 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=60.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh-cCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ-LELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~-l~lP~InVlsK~D 144 (236)
...++|||||-+... .++. ..++. .. ++++++|+.. +..+-. .++..+..... -+.|.+.|.||+|
T Consensus 52 ~~~i~D~~g~~~~~~---~~~~--~~~~~--~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 120 (169)
T 3q85_A 52 TLIVYDIWEQGDAGG---WLQD--HCLQT--GD-AFLIVFSVTD---RRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 120 (169)
T ss_dssp EEEEECCCCC-----------C--HHHHH--CS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred EEEEEECCCccccch---hhhh--hhhcc--CC-EEEEEEECCC---hHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcc
Confidence 357899999976432 1111 01222 23 5778888654 333222 22222222111 2899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.+.. +.. .+ . .. ++...++ ..++++|+++++++++++..+-+.+
T Consensus 121 l~~~~-~~~------~~------------~----~~---~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 121 LARSR-EVS------LE------------E----GR---HLAGTLS-CKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp CGGGC-CSC------HH------------H----HH---HHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hhhcc-cCC------HH------------H----HH---HHHHHcC-CcEEEecCccCCCHHHHHHHHHHHH
Confidence 96432 110 00 0 00 1122333 4899999999999999999887654
No 88
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.99 E-value=2.8e-05 Score=60.36 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=65.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.++|||||-+. +...+ ..++ +.. ++++++|+.. +..+-. .++..+.....-+.|.+.|+||+|+
T Consensus 53 ~~~~~D~~G~~~~---~~~~~---~~~~--~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 120 (170)
T 1ek0_A 53 KFEIWDTAGQERF---ASLAP---XYYR--NAQ-AALVVYDVTK---PQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120 (170)
T ss_dssp EEEEEEECCSGGG---GGGHH---HHHT--TCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEECCCChhh---hhhhh---hhhc--cCc-EEEEEEecCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCc
Confidence 4689999997652 22221 2232 334 5788999753 333322 2222232222348999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... ....... .....+ ...++ ..++++|+++++++++++..|-+.+
T Consensus 121 ~~~~-~~~~v~~-------------------~~~~~~---~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 121 LQEG-GERKVAR-------------------EEGEKL---AEEKG-LLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp GGSS-CCCCSCH-------------------HHHHHH---HHHHT-CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred cccc-cccCCCH-------------------HHHHHH---HHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7643 1110000 000111 11222 4899999999999999999987654
No 89
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.99 E-value=5e-05 Score=63.98 Aligned_cols=128 Identities=13% Similarity=0.195 Sum_probs=66.1
Q ss_pred CCEEEEeCCCceeeeeccch-HHHHHHHHhh--CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026576 67 DDYLVFDCPGQIELFTHVPV-LRNFVDHLKS--RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~--~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
..+.|+||||..+....... ...+.+.+.. .+.. ++++++|+..........-..+... .-.....|.+.|+||+
T Consensus 78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~d~~~~~~~~~~~l~~~~~~-~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPH-ALLLVVPLGRYTEEEHKATEKILKM-FGERARSFMILIFTRK 155 (239)
T ss_dssp EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCS-EEEEEEETTCCSSHHHHHHHHHHHH-HHHHHGGGEEEEEECG
T ss_pred ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCc-EEEEEeeCCCCCHHHHHHHHHHHHH-hhhhccceEEEEEeCC
Confidence 36799999997654332222 3344444432 2334 6899999875544222111111110 0012346999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccC-----cccHHHHHHHHHHhhc
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK-----ESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d-----~~~i~~L~~~Id~~~~ 217 (236)
|++... ++.+++... .+.+.++++.++. ++++++... .+++.+|+..|++.+.
T Consensus 156 D~~~~~-~~~~~i~~~-------------------~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 156 DDLGDT-NLHDYLREA-------------------PEDIQDLMDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp GGC--------------------------------CHHHHHHHHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcc-cHHHHHHhc-------------------hHHHHHHHHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 998755 455444311 1123344555554 577887764 3789999999988763
No 90
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.99 E-value=7e-05 Score=60.08 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=64.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHH-hhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAM-VQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m-~~l~lP~InVlsK~D 144 (236)
.+.++|||||-.+ +. ..-..+ .+.. ++++++|+.. +..+-.. ++..+... -.-+.|.+.|.||+|
T Consensus 61 ~l~i~Dt~G~~~~---~~---~~~~~~--~~~~-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 128 (181)
T 1fzq_A 61 KLNVWDIGGQRKI---RP---YWRSYF--ENTD-ILIYVIDSAD---RKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128 (181)
T ss_dssp EEEEEECSSCGGG---HH---HHHHHH--TTCS-EEEEEEETTC---GGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTT
T ss_pred EEEEEECCCCHHH---HH---HHHHHh--CCCC-EEEEEEECcC---HHHHHHHHHHHHHHHhChhhcCCCEEEEEECcC
Confidence 4689999998542 11 112233 2344 5889999753 3333322 22111111 124799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.+.. .. +.+...+.. ..+.. .-..++++|+++++++++++..|-+.+
T Consensus 129 l~~~~-~~--------~~~~~~~~~--------------~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 129 LLTAA-PA--------SEIAEGLNL--------------HTIRD-RVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp STTCC-CH--------HHHHHHTTG--------------GGCCS-SCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred cccCC-CH--------HHHHHHhCc--------------hhccC-CceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 97542 11 111111100 00111 126899999999999999999987754
No 91
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.98 E-value=2.3e-05 Score=62.18 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=63.0
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~DL 145 (236)
+.++|||||-+.-..... .+ .+.. ++++++|+.. +..+-. .++..+... -.-+.|.+.|.||+|+
T Consensus 56 ~~l~Dt~G~~~~~~~~~~------~~--~~~~-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 56 LQLVDTAGQDEYSIFPQT------YS--IDIN-GYILVYSVTS---IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp EEEEECCCCCTTCCCCGG------GT--TTCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred EEEEeCCCchhhhHHHHH------HH--hcCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 479999998764321111 12 2333 5788888763 333322 222222222 2248999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.... ... .+ . ..++...++ ..|+++|+++++++.+++..+-+.+.-
T Consensus 124 ~~~~-~~~------~~------------~-------~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 124 HMER-VIS------YE------------E-------GKALAESWN-AAFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp TTTC-CSC------HH------------H-------HHHHHHHTT-CEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred hhcc-eec------HH------------H-------HHHHHHHhC-CcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6432 110 00 0 001122233 479999999999999999998876543
No 92
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.98 E-value=2.5e-05 Score=62.03 Aligned_cols=110 Identities=13% Similarity=0.195 Sum_probs=55.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+.-.... ..+ .+.. ++++++|+.. +..|-. .++-.+.....-+.|.+.|.||+|+
T Consensus 58 ~~~l~Dt~G~~~~~~~~~------~~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 125 (183)
T 2fu5_C 58 KLQIWDTAGQERFRTITT------AYY--RGAM-GIMLVYDITN---EKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125 (183)
T ss_dssp EEEEEEC---------CC------TTT--TTCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--C
T ss_pred EEEEEcCCCChhhhhhHH------HHH--hcCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccC
Confidence 468999999865321110 111 2333 5888999754 443322 2332232222347999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .. . .+. .. ++...++ +.++++|+++++++++++..|-+.+
T Consensus 126 ~~~~-~v----~--~~~------------~~-------~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 126 NDKR-QV----S--KER------------GE-------KLALDYG-IKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp CSCC-CS----C--HHH------------HH-------HHHHHHT-CEEEECCC---CCHHHHHHHHHHHH
T ss_pred CccC-cC----C--HHH------------HH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7532 11 0 000 01 1112233 5899999999999999999987654
No 93
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.97 E-value=2.9e-05 Score=61.56 Aligned_cols=115 Identities=16% Similarity=0.064 Sum_probs=61.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh-hcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~-~l~lP~InVlsK~DLl 146 (236)
.+.++|||||-+.... .+ ..+ .+. -++++++|+..-..... +..++..+.... ..+.|.+.|+||+|+.
T Consensus 63 ~~~i~Dt~G~~~~~~~---~~---~~~--~~~-d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 63 KLNVWDLGGQTSIRPY---WR---CYY--ADT-AAVIFVVDSTDKDRMST-ASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp EEEEEEEC----CCTT---GG---GTT--TTE-EEEEEEEETTCTTTHHH-HHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred EEEEEECCCCHhHHHH---HH---HHh--ccC-CEEEEEEECCCHHHHHH-HHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 4679999998763221 11 112 123 36889999754322222 122222211111 3589999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.. .. +.+.+.+... .+ ......++++|+++++++++++..|-+.+
T Consensus 133 ~~~-~~--------~~i~~~~~~~--------------~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 133 GAL-SA--------SEVSKELNLV--------------EL-KDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp TCC-CH--------HHHHHHTTTT--------------TC-CSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CCC-CH--------HHHHHHhCcc--------------cc-cCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 532 11 1110111000 00 11225899999999999999999987754
No 94
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.97 E-value=5.1e-05 Score=70.28 Aligned_cols=104 Identities=17% Similarity=0.305 Sum_probs=62.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~DLl 146 (236)
++.|+|||||.. ..+.....++ ... ++++++|+..-..+...- . +.....+++| .|.|+||+|+.
T Consensus 105 ~~~iiDtpGh~~------f~~~~~~~~~--~aD-~~ilVvDa~~g~~~qt~~--~---l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 105 KFIIADTPGHEQ------YTRNMATGAS--TCD-LAIILVDARYGVQTQTRR--H---SYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp EEEEEECCCSGG------GHHHHHHHHT--TCS-EEEEEEETTTCSCHHHHH--H---HHHHHHTTCCEEEEEEECTTTT
T ss_pred eEEEEECCChHH------HHHHHHHHHh--hCC-EEEEEEECCCCCcHHHHH--H---HHHHHHcCCCeEEEEEEcCcCC
Confidence 589999999754 2344455553 344 589999986533232211 1 1122345776 68889999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--C--eeEEEeeccCcccHHH
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--M--VSFMPLDLRKESSIRY 207 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--l--v~f~pls~~d~~~i~~ 207 (236)
....+ .+......+.+++..++ . ..++|+|+.+++++.+
T Consensus 171 ~~~~~----------------------~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 171 GFDER----------------------VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TSCHH----------------------HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred cccHH----------------------HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 52200 11112223334445555 3 7899999999999887
No 95
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.97 E-value=1.8e-05 Score=64.46 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=64.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.|+|||||-+.- ... ...++ +.. ++++++|+..-..... +..++..+.....-+.|.+.|+||+|+..
T Consensus 70 ~~~l~Dt~G~~~~~---~~~---~~~~~--~~d-~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 70 KLQLWDTAGQERFR---TIT---TAYYR--GAM-GIILVYDVTDERTFTN-IKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp EEEEECCTTGGGGT---CCC---HHHHT--TCS-EEEEEEETTCHHHHHT-HHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred EEEEEeCCCcHHHH---HHH---HHHhc--cCC-EEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 46899999986532 111 12232 333 5888999754221111 22333333333334899999999999943
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.. . ..+ ...+ +...++ +.++++|+.+++++++++..|-+.+.
T Consensus 140 ~~--~------~~~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 140 RV--V------TAD------------QGEA-------LAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp CC--S------CHH------------HHHH-------HHHHHT-CCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred cc--c------CHH------------HHHH-------HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22 1 000 0011 111223 47999999999999999998877543
No 96
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.96 E-value=1e-05 Score=65.25 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=65.4
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL 145 (236)
+.++|||||-+.-..... .+ .+.. ++++++|+. ++..+-.. ++..+. ...-+.|.+.|.||+|+
T Consensus 73 ~~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 73 LHLWDTAGQEEYDRLRPL------SY--ADSD-VVLLCFAVN---NRTSFDNISTKWEPEIK-HYIDTAKTVLVGLKVDL 139 (194)
T ss_dssp EEEEEECCSGGGTTTGGG------GC--TTCS-EEEEEEETT---CHHHHHHHHHTHHHHHH-HHCTTSEEEEEEECGGG
T ss_pred EEEEECCCcHHHHHHhHh------hc--cCCc-EEEEEEECC---CHHHHHHHHHHHHHHHH-HhCCCCCEEEEEEChhh
Confidence 379999998653211110 11 2334 578889965 44444432 222222 22237999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
..... -. .. . ..+.++...++...++++|+++++++++++..+-+.+
T Consensus 140 ~~~~~-~~--~~--~-------------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 140 RKDGS-DD--VT--K-------------------QEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp CCTTT-TC--CC--H-------------------HHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCC-Cc--cc--H-------------------HHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 75320 00 00 0 0011223344555699999999999999999887754
No 97
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.96 E-value=3.6e-05 Score=62.41 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=65.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHH-HhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSA-MVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~-m~~l~lP~InVlsK~D 144 (236)
++.++|||||-+.-. ..+ ..+ .+.. ++++++|+.. +..|-.. ++..+.. ...-+.|.+.|.||+|
T Consensus 68 ~~~i~Dt~G~~~~~~---~~~---~~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 135 (190)
T 1m2o_B 68 KFTTFDLGGHIQARR---LWK---DYF--PEVN-GIVFLVDAAD---PERFDEARVELDALFNIAELKDVPFVILGNKID 135 (190)
T ss_dssp EEEEEECCCSGGGTT---SGG---GGC--TTCC-EEEEEEETTC---GGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTT
T ss_pred EEEEEECCCCHHHHH---HHH---HHH--hcCC-EEEEEEECCC---hHHHHHHHHHHHHHHcchhhcCCCEEEEEECCC
Confidence 468999999865221 111 112 2334 6899999764 3333222 2211111 1125899999999999
Q ss_pred cccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026576 145 LVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+.+.. .++.+++. ... ... + ..+....-..++++|+++++++++++..|-+.
T Consensus 136 l~~~~~~~~~~~~~~-----------~~~--~~~---~---~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 136 APNAVSEAELRSALG-----------LLN--TTG---S---QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp STTCCCHHHHHHHTT-----------CSS--CCC---------CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CcCCCCHHHHHHHhC-----------Ccc--ccc---c---ccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 96521 11222111 000 000 0 00123344789999999999999999988653
No 98
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.96 E-value=3.2e-06 Score=81.87 Aligned_cols=115 Identities=18% Similarity=0.294 Sum_probs=65.6
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-------cchhhHHHHHHHHHHHHhhcCCC-EEE
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-------TDVTKFISGCMASLSAMVQLELP-HVN 138 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-------~dp~~~is~~l~sls~m~~l~lP-~In 138 (236)
..+.|+|||||.++...... .+.. .. ++++++|+..- ..+...-. +.....+++| .|.
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~------~~~~--aD-~alLVVDa~~g~~e~gi~~~~qt~e~-----l~~~~~lgip~iIv 320 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIA------GASS--AD-FAVLVVDSSQNNFERGFLENGQTREH-----AYLLRALGISEIVV 320 (592)
T ss_dssp ----CCEEESSSEEEEECCC----------------CCSEEEEEECCSSTTSCSCSSHHHH-----HHHHHHSSCCCEEE
T ss_pred eEEEEEECCChHHHHHHHHH------HHhh--CC-EEEEEEECCCCccccccccchHHHHH-----HHHHHHcCCCeEEE
Confidence 46899999999886543322 2322 23 47788888631 12222211 2233457898 677
Q ss_pred EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHh-hccCC----eeEEEeeccCcccHH-------
Q 026576 139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV-DEYSM----VSFMPLDLRKESSIR------- 206 (236)
Q Consensus 139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li-~d~~l----v~f~pls~~d~~~i~------- 206 (236)
|+||+|+.....+ .+......+.+++ ..+++ +.|+|+|+.+++++.
T Consensus 321 viNKiDl~~~~~~----------------------~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~ 378 (592)
T 3mca_A 321 SVNKLDLMSWSED----------------------RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDL 378 (592)
T ss_dssp EEECGGGGTTCHH----------------------HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGG
T ss_pred EEeccccccccHH----------------------HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccccccc
Confidence 8999999752100 1122223333444 44444 589999999999998
Q ss_pred -------HHHHHHHHhhc
Q 026576 207 -------YVLSQIDNCIQ 217 (236)
Q Consensus 207 -------~L~~~Id~~~~ 217 (236)
.|+..|++...
T Consensus 379 ~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 379 YKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp GGTCCSCCHHHHHHTSCC
T ss_pred ccccchHHHHHHHHhhcc
Confidence 79999988654
No 99
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.96 E-value=3.9e-05 Score=60.25 Aligned_cols=109 Identities=12% Similarity=0.201 Sum_probs=64.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.++|||||-+.-..... .+ .+.. ++++++|+.. +..+-. .++..+.... -+.|.|.|+||+|+
T Consensus 59 ~~~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl 125 (181)
T 3tw8_B 59 KLQIWDTAGQERFRTITST------YY--RGTH-GVIVVYDVTS---AESFVNVKRWLHEINQNC-DDVCRILVGNKNDD 125 (181)
T ss_dssp EEEEEEETTGGGCSSCCGG------GG--TTCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTC
T ss_pred EEEEEcCCCchhhhhhHHH------Hh--ccCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCC
Confidence 4688999998664322111 12 2333 5888999764 333322 2222222211 26899999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+.. ... .. ...+ +...++ ..++++|+.+++++++++..|-+.+
T Consensus 126 ~~~~-~~~------~~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 126 PERK-VVE------TE------------DAYK-------FAGQMG-IQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp GGGC-CSC------HH------------HHHH-------HHHHHT-CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred chhc-ccC------HH------------HHHH-------HHHHcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6533 110 00 0001 111222 4799999999999999999987754
No 100
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.96 E-value=4.3e-05 Score=74.13 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=72.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.|+|||||..+...+.. .+ .... ++++++|+..--.|..+-. +....+.++|.|.|+||+|+..
T Consensus 71 ~i~liDTPGhe~F~~~~~r------~~--~~aD-~aILVvDa~~Gv~~qT~e~-----l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKR------GG--ALAD-LAILIVDINEGFKPQTQEA-----LNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEEECCCTTSCCTTSBCS------SS--BSCS-EEEEEEETTTCCCHHHHHH-----HHHHHHTTCCEEEEEECGGGST
T ss_pred CEEEEECCCcHHHHHHHHH------HH--hhCC-EEEEEEECCCCccHhHHHH-----HHHHHHcCCeEEEEeccccccc
Confidence 4799999999664322211 11 1233 5899999876444555443 2233457999999999999974
Q ss_pred chhH--hhhhccccHHHHHHHhhhcchhHHHHHHH---HHHHHhhc-------------cC-CeeEEEeeccCcccHHHH
Q 026576 148 NKKE--IEDYLNPESQFLLSELNQHMAPQFAKLNK---SLIELVDE-------------YS-MVSFMPLDLRKESSIRYV 208 (236)
Q Consensus 148 ~~~~--l~~~l~~~~~~l~~~l~~~~~~~~~~l~~---~l~~li~d-------------~~-lv~f~pls~~d~~~i~~L 208 (236)
.... -..+ .+.+..........+.+ .+.+.+.+ ++ .+.++|+|+.+++++.+|
T Consensus 137 ~~~~~~~~~~--------~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eL 208 (594)
T 1g7s_A 137 GWRVHEGRPF--------METFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPEL 208 (594)
T ss_dssp TCCCCTTCCH--------HHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHH
T ss_pred ccccccCCch--------HHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhH
Confidence 2100 0001 11111100000111111 11111211 22 368999999999999999
Q ss_pred HHHHHHhhc
Q 026576 209 LSQIDNCIQ 217 (236)
Q Consensus 209 ~~~Id~~~~ 217 (236)
+..|....+
T Consensus 209 l~~I~~~~~ 217 (594)
T 1g7s_A 209 LTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 999987654
No 101
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.96 E-value=4.6e-05 Score=62.82 Aligned_cols=110 Identities=13% Similarity=0.271 Sum_probs=64.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+. +.+.... -.+.. ++++++|+.. +..| +..++-.+.....-+.|.+.|.||+|+
T Consensus 76 ~l~l~Dt~G~~~~-------~~~~~~~-~~~~d-~~i~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl 143 (201)
T 2ew1_A 76 KLQIWDTAGQERF-------RSITQSY-YRSAN-ALILTYDITC---EESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143 (201)
T ss_dssp EEEEEEECCSGGG-------HHHHGGG-STTCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEECCCcHHH-------HHHHHHH-HhcCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 4688999997431 1221111 12334 6888999653 3333 233333333333457999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+.. ++. .+ ...+ ++ ...+ ..|+++|+++++++++++..|-+.+
T Consensus 144 ~~~~-~v~------~~------------~~~~----~~---~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 144 AERR-EVS------QQ------------RAEE----FS---EAQD-MYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp GGGC-SSC------HH------------HHHH----HH---HHHT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccc-ccC------HH------------HHHH----HH---HHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6432 110 00 0011 11 1122 5799999999999999999887654
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.95 E-value=2.9e-05 Score=69.48 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=61.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHH-HHHhhcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sl-s~m~~l~lP~InVlsK~DLl 146 (236)
.+.|+|||||-++... .+ ..++ +. -++++++|+.......... ..+..+ .....-+.|.|.|.||+|+.
T Consensus 210 ~l~i~Dt~G~~~~~~~---~~---~~~~--~a-d~vilV~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 210 SFTVWDVGGQDKIRPL---WR---HYFQ--NT-QGLIFVVDSNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp EEEEEECC-----CCS---HH---HHHT--TE-EEEEEEEETTCSSSHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEECCCCHhHHHH---HH---HHhc--cC-CEEEEEEECCchHHHHHHH-HHHHHHHhhhccCCCeEEEEEECccCC
Confidence 5789999998664321 11 1232 23 3688899976432222211 111111 11112389999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
... ... .+...+.. ... ...-..|+++|++++++|++++..|-+.+
T Consensus 280 ~~~-~~~--------~i~~~~~~--------------~~~-~~~~~~~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 280 NAM-NAA--------EITDKLGL--------------HSL-RHRNWYIQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp TCC-CHH--------HHHHHHTC--------------TTC-CSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ccc-CHH--------HHHHHhch--------------hhh-hcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 543 111 11111110 000 11236899999999999999999987754
No 103
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.95 E-value=1.6e-05 Score=74.45 Aligned_cols=106 Identities=15% Similarity=0.241 Sum_probs=59.3
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH----HHHHHHHHHHHhhcCCC-EEEEec
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF----ISGCMASLSAMVQLELP-HVNILS 141 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~----is~~l~sls~m~~l~lP-~InVls 141 (236)
.++.|+|||||- +..+.....+ .... ++++++|+..-..+..| -+.- .+.....+++| .|.|+|
T Consensus 85 ~~~~iiDtPGh~------~f~~~~~~~~--~~aD-~~ilVvda~~g~~~~sf~~~~qt~~--~~~~~~~~~v~~iivviN 153 (458)
T 1f60_A 85 YQVTVIDAPGHR------DFIKNMITGT--SQAD-CAILIIAGGVGEFEAGISKDGQTRE--HALLAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEEEECCCCT------THHHHHHHSS--SCCS-EEEEEEECSHHHHHHHTCTTSHHHH--HHHHHHHTTCCEEEEEEE
T ss_pred ceEEEEECCCcH------HHHHHHHhhh--hhCC-EEEEEEeCCcCccccccCcchhHHH--HHHHHHHcCCCeEEEEEE
Confidence 368999999964 2333333333 2344 68999998642112111 0000 11122346888 677899
Q ss_pred ccccccc-hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHH
Q 026576 142 KMDLVTN-KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIR 206 (236)
Q Consensus 142 K~DLl~~-~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~ 206 (236)
|+|+... ...+ ......+.+++..+++ +.|+|+|+.+++++.
T Consensus 154 K~Dl~~~~~~~~-----------------------~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 154 KMDSVKWDESRF-----------------------QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp CGGGGTTCHHHH-----------------------HHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred ccccccCCHHHH-----------------------HHHHHHHHHHHHHcCCCccCceEEEeecccCcCcc
Confidence 9999732 1111 1111222233344443 789999999999986
No 104
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.95 E-value=3.7e-05 Score=61.70 Aligned_cols=110 Identities=14% Similarity=0.191 Sum_probs=64.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+.-.. .. ..+ .+.. ++++++|+.. +..+ +..++-.+.....-+.|.+.|+||+|+
T Consensus 72 ~~~l~Dt~G~~~~~~~---~~---~~~--~~~d-~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 139 (189)
T 2gf9_A 72 KLQIWDTAGQERYRTI---TT---AYY--RGAM-GFLLMYDIAN---QESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139 (189)
T ss_dssp EEEEEECCSCCSSCCS---GG---GGG--TTCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEeCCCcHHHhhh---HH---Hhc--cCCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 4689999998653221 11 112 2334 5788999753 3333 222322222222248999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .. . .+ ... ++...++ +.++++|+++++++++++..|-+.+
T Consensus 140 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 140 EDER-VV----P--AE------------DGR-------RLADDLG-FEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp GGGC-CS----C--HH------------HHH-------HHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccc-CC----C--HH------------HHH-------HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6532 11 0 00 001 1112233 4899999999999999999987654
No 105
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.95 E-value=7.1e-05 Score=60.37 Aligned_cols=110 Identities=11% Similarity=0.201 Sum_probs=64.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHh-hcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMV-QLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~-~l~lP~InVlsK~D 144 (236)
.+.|+|||||-+... .. -..++.. . ++++++|+.. +..+-. .++..+.... ..+.|.+.|+||+|
T Consensus 63 ~~~l~Dt~G~~~~~~---~~---~~~~~~~--~-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 130 (206)
T 2bov_A 63 QIDILDTAGQEDYAA---IR---DNYFRSG--E-GFLCVFSITE---MESFAATADFREQILRVKEDENVPFLLVGNKSD 130 (206)
T ss_dssp EEEEEECCCTTCCHH---HH---HHHHHHC--S-EEEEEEETTC---HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred EEEEEcCCChhhhHH---HH---HHHHhhC--C-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccC
Confidence 467999999865321 11 1223222 3 5778888653 333322 2222222222 23899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.... +. ..+. .. ++...++ ..++++|+.+++++++++..|-+.+
T Consensus 131 l~~~~-~~------~~~~------------~~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 131 LEDKR-QV------SVEE------------AK-------NRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp CGGGC-CS------CHHH------------HH-------HHHHHHT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccccc-cc------cHHH------------HH-------HHHHHhC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 96532 11 0000 01 1122333 4799999999999999999887754
No 106
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.94 E-value=4e-05 Score=61.73 Aligned_cols=109 Identities=13% Similarity=0.197 Sum_probs=64.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+.-. ..+ ..++ +.. ++++++|+.. +..+ +..++..+.....-+.|.+.|+||+|+
T Consensus 71 ~~~i~Dt~G~~~~~~---~~~---~~~~--~~d-~ii~v~d~~~---~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl 138 (191)
T 2a5j_A 71 KLQIWDTAGQESFRS---ITR---SYYR--GAA-GALLVYDITR---RETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 138 (191)
T ss_dssp EEEEECCTTGGGTSC---CCH---HHHT--TCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEECCCchhhhh---hHH---HHhc--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 468999999865322 111 2232 334 5788999754 3322 222333333222348999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.+.. ++ . .+ ... ++...++ ..|+++|+++++++++++..|-+.
T Consensus 139 ~~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 139 ESRR-DV----K--RE------------EGE-------AFAREHG-LIFMETSAKTACNVEEAFINTAKE 181 (191)
T ss_dssp GGGC-CS----C--HH------------HHH-------HHHHHHT-CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred CCcc-cc----C--HH------------HHH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 6432 11 0 00 000 1112233 489999999999999999887654
No 107
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.94 E-value=2.7e-05 Score=62.59 Aligned_cols=110 Identities=10% Similarity=0.154 Sum_probs=64.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+. +.... ..++ +.. ++++++|+.. +..+- ..++..+.....-+.|.+.|+||+|+
T Consensus 75 ~~~i~Dt~G~~~~---~~~~~---~~~~--~~d-~vi~v~D~~~---~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl 142 (193)
T 2oil_A 75 KAQIWDTAGLERY---RAITS---AYYR--GAV-GALLVFDLTK---HQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142 (193)
T ss_dssp EEEEEEESCCCTT---CTTHH---HHHT--TCC-EEEEEEETTC---HHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGG
T ss_pred EEEEEeCCCchhh---hhhhH---HHhc--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCc
Confidence 3568999998542 22221 2232 333 5788899754 33322 22222222222358999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .. . .. ... ++....+ +.++++|+.+++++++++..|-+.+
T Consensus 143 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 143 SQAR-EV----P--TE------------EAR-------MFAENNG-LLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp GGGC-CS----C--HH------------HHH-------HHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cccc-cc----C--HH------------HHH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6532 11 0 00 001 1112233 5899999999999999999887643
No 108
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.93 E-value=8.9e-05 Score=60.52 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=62.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHH-hhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAM-VQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m-~~l~lP~InVlsK~D 144 (236)
++.++|||||-+.-.. .+ ..++ +.. ++++++|+.. +..|-.. ++..+... ...+.|.+.|.||+|
T Consensus 70 ~l~i~Dt~G~~~~~~~---~~---~~~~--~~d-~~i~v~D~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 137 (198)
T 1f6b_A 70 TFTTFDLGGHIQARRV---WK---NYLP--AIN-GIVFLVDCAD---HERLLESKEELDSLMTDETIANVPILILGNKID 137 (198)
T ss_dssp EEEEEEECC----CCG---GG---GGGG--GCS-EEEEEEETTC---GGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTT
T ss_pred EEEEEECCCcHhhHHH---HH---HHHh--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHhCcccCCCcEEEEEECCC
Confidence 5789999998763321 11 1122 233 5889999753 4433322 22211111 124899999999999
Q ss_pred cccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhc--cCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d--~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.+.. .++.+++... ..... + .. ..+.+ ..-..++++|+++++++++++..+-+.+
T Consensus 138 l~~~~~~~~~~~~~~~~--------~~~~~-~------~~-~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 138 RPEAISEERLREMFGLY--------GQTTG-K------GS-VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp STTCCCHHHHHHHHTCT--------TTCCC-S------SC-CCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHhCcc--------ccccc-c------cc-cccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 96421 1111111100 00000 0 00 00111 1237899999999999999999886643
No 109
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.93 E-value=2.6e-05 Score=73.66 Aligned_cols=143 Identities=12% Similarity=0.103 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchHHHH-HHH-Hhh-CCCceEEE
Q 026576 38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVLRNF-VDH-LKS-RNFNVCAV 104 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~~~i-v~~-L~~-~~~~~~~V 104 (236)
||.|.-.-++.|..+-.......... .....+.|+|||||-+ +. +....+ +++ +.. .+.. +++
T Consensus 242 ~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~-~~--~~ve~~gi~~~~~~~~~aD-~vl 317 (476)
T 3gee_A 242 PNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE-AG--EEIEHEGIRRSRMKMAEAD-LIL 317 (476)
T ss_dssp TTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-----------------------CCCSSCS-EEE
T ss_pred CCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc-ch--hHHHHHHHHHHHhhcccCC-EEE
Confidence 78888888888875410222221111 1123579999999866 22 222111 111 211 2344 689
Q ss_pred EeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026576 105 YLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE 184 (236)
Q Consensus 105 ~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~ 184 (236)
+++|+..-..... +... ..+.-.++ +.|.|.|+||+|+.+.. .... .. +.+
T Consensus 318 ~VvD~s~~~s~~~-~~~~-~~~l~~l~-~~piIvV~NK~Dl~~~~-~~~~---------------------~~----l~~ 368 (476)
T 3gee_A 318 YLLDLGTERLDDE-LTEI-RELKAAHP-AAKFLTVANKLDRAANA-DALI---------------------RA----IAD 368 (476)
T ss_dssp EEEETTTCSSGGG-HHHH-HHHHHHCT-TSEEEEEEECTTSCTTT-HHHH---------------------HH----HHH
T ss_pred EEEECCCCcchhh-hHHH-HHHHHhcC-CCCEEEEEECcCCCCcc-chhH---------------------HH----HHh
Confidence 9999876544422 1111 11122233 89999999999997544 1100 00 111
Q ss_pred HhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
. +...++++|+++++++++|+..|-+.++
T Consensus 369 ~----~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 369 G----TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp H----HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred c----CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 1 2257899999999999999999999886
No 110
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.93 E-value=5.8e-05 Score=59.05 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=58.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHH-hhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAM-VQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m-~~l~lP~InVlsK~D 144 (236)
.+.++|||||-.. .+ . .+.... -.+.. ++++++|+. ++..|-.. ++..+... ..-+.|.+.|.||+|
T Consensus 53 ~~~~~D~~g~~~~-~~-~---~~~~~~-~~~~~-~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~D 122 (175)
T 2nzj_A 53 TLVVVDTWEAEKL-DK-S---WSQESC-LQGGS-AYVIVYSIA---DRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122 (175)
T ss_dssp EEEEECCC---------C---HHHHHT-TTSCS-EEEEEEETT---CHHHHHHHHHHHHHHHHCC----CCEEEEEECTT
T ss_pred EEEEEecCCCCcc-ch-h---hhHHhh-cccCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChh
Confidence 3579999998653 11 1 111111 12333 577788865 44443322 22111111 113899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.... ++. .+. ...+ ...++ ..|+++|+++++++++++..|-+.+
T Consensus 123 l~~~~-~v~------~~~------------~~~~-------~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 123 LARCR-EVS------VEE------------GRAC-------AVVFD-CKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp CTTTC-CSC------HHH------------HHHH-------HHHHT-SEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hcccc-ccC------HHH------------HHHH-------HHHcC-CeEEEEecCCCCCHHHHHHHHHHHH
Confidence 97543 110 000 0011 11223 5899999999999999999987755
No 111
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.92 E-value=2e-05 Score=64.16 Aligned_cols=110 Identities=13% Similarity=0.162 Sum_probs=65.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+...... ..+ .+.. ++++++|+.. +..+- ..++-.+.....-+.|.+.|+||+|+
T Consensus 58 ~~~l~Dt~G~~~~~~~~~------~~~--~~~d-~vilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 125 (206)
T 2bcg_Y 58 KLQIWDTAGQERFRTITS------SYY--RGSH-GIIIVYDVTD---QESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125 (206)
T ss_dssp EEEEECCTTTTTTTCCCG------GGG--TTCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEeCCChHHHHHHHH------Hhc--cCCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 478999999865322111 112 2333 5888999754 33322 22333333333347999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .. . .+ ... ++...++ +.++++|+.+++++++++..|-+.+
T Consensus 126 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 126 KDKR-VV----E--YD------------VAK-------EFADANK-MPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp TTTC-CS----C--HH------------HHH-------HHHHHTT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccc-cc----C--HH------------HHH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7532 11 0 00 001 1112233 5899999999999999999887754
No 112
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.92 E-value=1.6e-05 Score=68.79 Aligned_cols=122 Identities=8% Similarity=0.127 Sum_probs=69.2
Q ss_pred CCEEEEeCCCceeeee---ccc---hHHH-HHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEE
Q 026576 67 DDYLVFDCPGQIELFT---HVP---VLRN-FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 139 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~---~~~---~~~~-iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InV 139 (236)
.++.|+||||+.+... ... ..+. ...++ + +...++++++|+..-....... .+ +...-..+.|.+.|
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~il~v~d~~~~~~~~~~~-~~---~~~~~~~~~~~i~V 198 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV-T-KENCLILAVSPANSDLANSDAL-KI---AKEVDPQGQRTIGV 198 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH-T-STTEEEEEEEESSSCGGGCHHH-HH---HHHHCTTCSSEEEE
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHH-c-CCCeEEEEEecCCcchhhhHHH-HH---HHHhCCCCCeEEEE
Confidence 4799999999765332 111 2222 22333 2 3445566889986532222211 01 12223468999999
Q ss_pred ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 140 LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 140 lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
+||+|+..........+. .... -...+...++++|+.++++++.++..|.+-..+
T Consensus 199 ~NK~Dl~~~~~~~~~~~~-----------~~~~-------------~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~ 253 (299)
T 2aka_B 199 ITKLDLMDEGTDARDVLE-----------NKLL-------------PLRRGYIGVVNRSQKDIDGKKDITAALAAERKF 253 (299)
T ss_dssp EECGGGSCTTCCCHHHHT-----------TCSS-------------CCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHH
T ss_pred EEccccCCCCchHHHHHh-----------CCcC-------------cCCCCcEEEECCChhhccccccHHHHHHHHHHH
Confidence 999999864311111111 0000 001134678899999999999999988774433
No 113
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.92 E-value=4.8e-05 Score=61.63 Aligned_cols=110 Identities=11% Similarity=0.182 Sum_probs=64.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+. +.+....-+ +.. ++++++|+.. +..+ +..++..+.....-+.|.+.|+||+|+
T Consensus 58 ~~~l~Dt~G~~~~-------~~~~~~~~~-~~d-~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 125 (203)
T 1zbd_A 58 KLQIWDTAGLERY-------RTITTAYYR-GAM-GFILMYDITN---EESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 125 (203)
T ss_dssp EEEEEEECCSGGG-------HHHHHTTGG-GCS-EEEEEEETTC---HHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTC
T ss_pred EEEEEECCCchhh-------cchHHHhhc-CCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 4689999998431 122111111 233 5888999653 4333 223333333222248999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .. . .+ ...+ +...++ +.++++|+.+++++++++..|-+.+
T Consensus 126 ~~~~-~~----~--~~------------~~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 126 EDER-VV----S--SE------------RGRQ-------LADHLG-FEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp TTSC-CS----C--HH------------HHHH-------HHHHHT-CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred Cccc-cc----C--HH------------HHHH-------HHHHCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6532 11 0 00 0011 112223 4899999999999999988877643
No 114
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.91 E-value=3.2e-05 Score=62.94 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=63.6
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~DL 145 (236)
+.|+|||||-+.-..... .+ .+.. ++++++|+.. +..+-. .++..+... ..-+.|.+.|+||+|+
T Consensus 74 ~~l~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 141 (201)
T 3oes_A 74 LHLVDTAGQDEYSILPYS------FI--IGVH-GYVLVYSVTS---LHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141 (201)
T ss_dssp EEEEEECCCCTTCCCCGG------GT--TTCC-EEEEEEETTC---HHHHHHHHHHHHHHHC-----CCCEEEEEECTTC
T ss_pred EEEEECCCccchHHHHHH------HH--hcCC-EEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence 579999998764322111 12 2333 5788888763 333322 222221111 1237899999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.+.. .+.. . ... ++...++ ..|+++|+++++++++++..|-+.+.-
T Consensus 142 ~~~~-~v~~------~------------~~~-------~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 142 SPER-EVQA------V------------EGK-------KLAESWG-ATFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp GGGC-CSCH------H------------HHH-------HHHHHHT-CEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccc-ccCH------H------------HHH-------HHHHHhC-CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 7533 1100 0 000 1112223 489999999999999999998776543
No 115
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.90 E-value=6.3e-05 Score=59.40 Aligned_cols=106 Identities=9% Similarity=0.113 Sum_probs=62.8
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHH--HHHHHhh---cCCCEEEEeccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA--SLSAMVQ---LELPHVNILSKM 143 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~--sls~m~~---l~lP~InVlsK~ 143 (236)
..++|||||.+ . ..++. .. ++++++|+. ++..|-...-+ -+....+ -+.|.+.|.||+
T Consensus 56 l~i~Dt~G~~~--------~---~~~~~--~d-~~ilv~D~~---~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 118 (178)
T 2iwr_A 56 VLIREEAGAPD--------A---KFSGW--AD-AVIFVFSLE---DENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118 (178)
T ss_dssp EEEEECSSSCC--------H---HHHHH--CS-EEEEEEETT---CHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECT
T ss_pred EEEEECCCCch--------h---HHHHh--CC-EEEEEEECc---CHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 57799999976 1 23333 23 578889964 45554433211 1221211 378999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
|+.... . +-.. .+ ... ++...++-..|+++|+++++++++++..+-+.
T Consensus 119 Dl~~~~-~--~~v~--~~------------~~~-------~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 119 RISASS-P--RVVG--DA------------RAR-------ALXADMKRCSYYETXATYGLNVDRVFQEVAQK 166 (178)
T ss_dssp TCBTTB-C--CCSC--HH------------HHH-------HHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred cccccc-c--CcCC--HH------------HHH-------HHHHhhcCCeEEEEeccccCCHHHHHHHHHHH
Confidence 995311 0 0000 00 001 12223344789999999999999999988664
No 116
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.90 E-value=0.00019 Score=58.08 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=65.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.+-|+|||||-.+....-. .-..++. .. ++++++|+..- .+.-..+..++..+. ...-+.|.+.|.||+||.
T Consensus 70 ~l~i~Dt~G~~~~~~~~~~---~~~~~~~--~~-~~i~v~d~~~~~~~~~~~~~~~l~~~~-~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 70 NFQIWDFPGQMDFFDPTFD---YEMIFRG--TG-ALIYVIDAQDDYMEALTRLHITVSKAY-KVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp CEEEEECCSSCCTTCTTCC---HHHHHHT--CS-EEEEEEETTSCCHHHHHHHHHHHHHHH-HHCTTCEEEEEEECGGGS
T ss_pred EEEEEECCCCHHHHhhhhh---ccccccc--CC-EEEEEEECCCchHHHHHHHHHHHHHHH-hcCCCCcEEEEEeccccC
Confidence 5789999998663222100 0122322 33 57899997652 111122222222211 123489999999999998
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
+....+... . .......+.+++....-.-+.|+++|+++ +++++++..+=+
T Consensus 143 ~~~~~~~~~---------~-------~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 143 SDDHKIETQ---------R-------DIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp CHHHHHHHH---------H-------HHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHH
T ss_pred chhhhhHHH---------h-------HHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHH
Confidence 654111100 0 00111112222211111227899999999 999999988754
No 117
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.90 E-value=2.3e-05 Score=66.77 Aligned_cols=129 Identities=12% Similarity=0.160 Sum_probs=70.5
Q ss_pred CEEEEeCCCceeeeeccc-hHHHHHHHHh-h-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEec-cc
Q 026576 68 DYLVFDCPGQIELFTHVP-VLRNFVDHLK-S-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS-KM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~-~~~~iv~~L~-~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVls-K~ 143 (236)
++.|+||||+........ ..+.+.+.+. . .+.. ++++++|+..+......+...+.... -.+...|.|.|+| |+
T Consensus 72 ~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d-~il~V~d~~~~~~~~~~~~~~l~~~~-~~~~~~~~i~vv~nK~ 149 (260)
T 2xtp_A 72 EIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPH-VLLLVTQLGRYTSQDQQAAQRVKEIF-GEDAMGHTIVLFTHKE 149 (260)
T ss_dssp EEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCS-EEEEEEETTCCCHHHHHHHHHHHHHH-CGGGGGGEEEEEECGG
T ss_pred EEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCc-EEEEEEeCCCCCHHHHHHHHHHHHHh-CchhhccEEEEEEccc
Confidence 589999999876432222 1223333332 1 2344 68999998754333332222211110 0112679999998 99
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-e-eE--EEeeccCcccHHHHHHHHHHhhcc
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-V-SF--MPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v-~f--~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
|+... .+..++... .. ..+.+++...+. . .| +|+|++++.+++.++..|.+.+..
T Consensus 150 Dl~~~--~~~~~i~~~-----------~~-------~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 150 DLNGG--SLMDYMHDS-----------DN-------KALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGTTC--CHHHHHHHC-----------CC-------HHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCc--cHHHHHHhc-----------ch-------HHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 99743 233322210 00 011122233332 1 13 889999999999999999887654
No 118
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.89 E-value=0.0001 Score=59.04 Aligned_cols=111 Identities=7% Similarity=0.117 Sum_probs=63.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHh--hcCCCEEEEeccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMV--QLELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~--~l~lP~InVlsK~ 143 (236)
.+.++|||||-+.. ... -..+... . ++++++|+.. +..+-. .++..+.... .-+.|.+.|+||+
T Consensus 57 ~~~l~Dt~G~~~~~---~~~---~~~~~~~--d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~ 124 (199)
T 2gf0_A 57 TLQITDTTGSHQFP---AMQ---RLSISKG--H-AFILVFSVTS---KQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC 124 (199)
T ss_dssp EEEEEECCGGGSCH---HHH---HHHHHHC--S-EEEEEEETTC---HHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECT
T ss_pred EEEEEeCCChHHhH---HHH---HHhhccC--C-EEEEEEECcC---HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 46799999986532 111 1223222 3 5788888753 332211 1111122111 1378999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
|+.... . . ... ... +...++ ..|+++|+.+++++++++..|-+.+..
T Consensus 125 Dl~~~~--~----~--~~~------------~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 125 DETQRE--V----D--TRE------------AQA-------VAQEWK-CAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp TCSSCS--S----C--HHH------------HHH-------HHHHHT-CEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred cCCccc--c----C--HHH------------HHH-------HHHHhC-CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 997532 1 0 000 001 111223 589999999999999999999886543
No 119
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.89 E-value=6.6e-05 Score=60.06 Aligned_cols=121 Identities=11% Similarity=0.087 Sum_probs=66.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+.++|||||-+.-. ..+. .+ .+.. ++++++|+.. +..|-.. ++-.+. ...-+.|.+.|.||+|
T Consensus 56 ~~~i~Dt~G~~~~~~---~~~~---~~--~~~~-~~i~v~d~~~---~~s~~~~~~~~~~~i~-~~~~~~piilv~nK~D 122 (184)
T 1m7b_A 56 ELSLWDTSGSPYYDN---VRPL---SY--PDSD-AVLICFDISR---PETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 122 (184)
T ss_dssp EEEEEEECCSGGGTT---TGGG---GC--TTCS-EEEEEEETTC---HHHHHHHHHTHHHHHH-HHCTTCEEEEEEECGG
T ss_pred EEEEEECCCChhhhh---hHHh---hc--CCCc-EEEEEEECCC---HHHHHHHHHHHHHHHH-HHCCCCCEEEEEEcch
Confidence 468999999855211 1100 11 2333 5788999753 4444332 221221 1223899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeecc-CcccHHHHHHHHHHh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~-d~~~i~~L~~~Id~~ 215 (236)
+......+.++... ...... . ....++...++...|+++|++ +++++++++..|-+.
T Consensus 123 l~~~~~~~~~~~~~--------~~~~v~--~----~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 123 LRTDVSTLVELSNH--------RQTPVS--Y----DQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp GGGCHHHHHHHHTT--------TCCCCC--H----HHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred hhcchhhHhhhhhc--------ccCCCC--H----HHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 97543222211110 000000 0 011233344566789999998 689999999888664
No 120
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.89 E-value=5.4e-05 Score=60.70 Aligned_cols=112 Identities=12% Similarity=0.265 Sum_probs=62.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh-hcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~-~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-++- . .+.. .++ +.. ++++++|+..-..... +..++..+.... .-+.|.+.|+||+|+
T Consensus 70 ~~~l~Dt~G~~~~~---~---~~~~~~~~--~~d-~iilv~D~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (189)
T 1z06_A 70 KIQLWDTAGQERFR---K---SMVQHYYR--NVH-AVVFVYDMTNMASFHS-LPAWIEECKQHLLANDIPRILVGNKCDL 139 (189)
T ss_dssp EEEEEECCCSHHHH---T---TTHHHHHT--TCC-EEEEEEETTCHHHHHT-HHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred EEEEEECCCchhhh---h---hhhHHHhc--CCC-EEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 46899999975421 0 1112 232 333 6889999764222111 222333332222 458999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCc---ccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE---SSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~---~~i~~L~~~Id~~~ 216 (236)
.... ++. .+ ... ++...++ +.|+++|++++ +++++++..|-+.+
T Consensus 140 ~~~~-~v~------~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 140 RSAI-QVP------TD------------LAQ-------KFADTHS-MPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp GGGC-CSC------HH------------HHH-------HHHHHTT-CCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred cccc-eeC------HH------------HHH-------HHHHHcC-CEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 6432 110 00 001 1112233 48999999999 99999998876543
No 121
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.89 E-value=3.6e-05 Score=61.47 Aligned_cols=112 Identities=10% Similarity=0.169 Sum_probs=65.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHh-hcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV-QLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~-~l~lP~InVlsK~D 144 (236)
.+.|+|||||-+.- ...+ ..++ +.. ++++++|+.. +..+- ..++-.+.... .-+.|.+.|+||+|
T Consensus 65 ~~~i~Dt~G~~~~~---~~~~---~~~~--~~d-~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 132 (195)
T 1x3s_A 65 KLAIWDTAGQERFR---TLTP---SYYR--GAQ-GVILVYDVTR---RDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 132 (195)
T ss_dssp EEEEEEECSSGGGC---CSHH---HHHT--TCC-EEEEEEETTC---HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTT
T ss_pred EEEEEeCCCchhhh---hhhH---HHhc--cCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCc
Confidence 36889999986532 2221 2232 233 5888999753 33332 22222221111 13789999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
+.... . . ... .. ++...++ ..|+++|+++++++++++..|-+.+.-.
T Consensus 133 l~~~~--~----~--~~~------------~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 133 KENRE--V----D--RNE------------GL-------KFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp SSSCC--S----C--HHH------------HH-------HHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred Ccccc--c----C--HHH------------HH-------HHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 94322 1 0 000 00 1112233 5799999999999999999988765433
No 122
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.88 E-value=0.00012 Score=59.37 Aligned_cols=118 Identities=13% Similarity=0.141 Sum_probs=63.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.|+|||||-+.- . .....++.. . ++++++|+..-..... +..++-.+.....-+.|.+.|+||+|+..
T Consensus 78 ~l~i~Dt~G~~~~~---~---~~~~~~~~~--d-~iilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 78 VLQLWDTAGQERFR---S---IAKSYFRKA--D-GVLLLYDVTCEKSFLN-IREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp EEEEEECTTCTTCH---H---HHHHHHHHC--S-EEEEEEETTCHHHHHT-HHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred EEEEEECCCCcchh---h---hHHHHHhhC--C-EEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 36799999975521 1 122233333 3 5888999753222111 22233223322334899999999999964
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.. ..+..-. . ..+....+ ...++ ..|+++|+++++++++++..|-+.+
T Consensus 148 ~~-~~~~~~~-------------v---~~~~~~~~---~~~~~-~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 148 TA-ATEGQKC-------------V---PGHFGEKL---AMTYG-ALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp HH-HHTTCCC-------------C---CHHHHHHH---HHHHT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cc-ccccccc-------------c---CHHHHHHH---HHHcC-CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 32 1100000 0 00011111 12233 4899999999999999999887654
No 123
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.88 E-value=5.9e-05 Score=78.33 Aligned_cols=114 Identities=18% Similarity=0.301 Sum_probs=69.5
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEeccccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~DL 145 (236)
..+.|+|||||..+ .+.....+ .... ++++++|+..-..+...-. +.....+++|+ |.|+||+|+
T Consensus 359 ~kI~IIDTPGHedF------~~~mi~ga--s~AD-~aILVVDAtdGv~~QTrEh-----L~ll~~lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 359 RHYAHVDCPGHADY------VKNMITGA--AQMD-GAILVVAATDGPMPQTREH-----ILLGRQVGVPYIIVFLNKCDM 424 (1289)
T ss_dssp CEEEEEECCCHHHH------HHHHHHTS--CCCS-EEEEEEETTTCSCTTHHHH-----HHHHHHHTCSCEEEEEECCTT
T ss_pred EEEEEEECCChHHH------HHHHHHHH--hhCC-EEEEEEcCCccCcHHHHHH-----HHHHHHcCCCeEEEEEeeccc
Confidence 46899999998752 22333333 2344 5899999865333332111 11222469995 788999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCc--------ccHHHHHHHHH
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKE--------SSIRYVLSQID 213 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~--------~~i~~L~~~Id 213 (236)
..+...++ .....+.+++..+++ +.++|+|+.++ +++..|+..|+
T Consensus 425 v~d~e~le-----------------------~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~ 481 (1289)
T 3avx_A 425 VDDEELLE-----------------------LVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLD 481 (1289)
T ss_dssp CCCHHHHH-----------------------HHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHH
T ss_pred ccchhhHH-----------------------HHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHh
Confidence 75331111 111122233444443 78999999998 57999999998
Q ss_pred Hhhc
Q 026576 214 NCIQ 217 (236)
Q Consensus 214 ~~~~ 217 (236)
+.+.
T Consensus 482 ~~Ip 485 (1289)
T 3avx_A 482 SYIP 485 (1289)
T ss_dssp HTSC
T ss_pred hhcC
Confidence 8664
No 124
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.10 E-value=1.8e-06 Score=70.55 Aligned_cols=123 Identities=11% Similarity=0.120 Sum_probs=64.0
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
..++|||||-+.-. ..+ ..++ +.. ++++++|+..-.........++..+.... -+.|.+.|.||+|+...
T Consensus 80 l~i~Dt~G~~~~~~---~~~---~~~~--~~d-~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 80 LGLWDTAGQEDYDR---LRP---LSYP--QTD-VFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149 (204)
Confidence 34899999865321 111 1122 223 57788886432222221111221122111 18999999999999764
Q ss_pred hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026576 149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
......+..... ..+. .....++...++...|+++|+++++++++++..|-+.
T Consensus 150 ~~~~~~~~~~~~----~~v~----------~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 150 KDTIEKLKEKKL----TPIT----------YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 311111111000 0000 0111233344455689999999999999999887653
No 125
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.87 E-value=2.5e-05 Score=72.75 Aligned_cols=113 Identities=14% Similarity=0.208 Sum_probs=72.3
Q ss_pred CEEEEeCCCceeeeec-cchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~-~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.+.++|||||.+.-.. .....+....+. +.. ++++++|+. .. .....+ +......++|.|.|+||+|+.
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~--~aD-~vllVvD~~-~~---~~~~~~---l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFY--RAD-CGILVTDSA-PT---PYEDDV---VNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHT--SCS-EEEEECSSS-CC---HHHHHH---HHHHHHTTCCEEEECCCCTTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHh--cCC-EEEEEEeCC-Ch---HHHHHH---HHHHHhcCCCEEEEEeCcCCC
Confidence 6789999999873322 122444444553 334 588999982 22 222222 233344599999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
+... . .... ++.+.++ +.++++|+++++++++++..|-+.++-.
T Consensus 154 ~~~~-~---------~~~~------------------~l~~~~g-~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 154 GEKA-E---------ELKG------------------LYESRYE-AKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp TCCC-T---------HHHH------------------HSSCCTT-CCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred CccH-H---------HHHH------------------HHHHHcC-CCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 6541 1 0001 1122333 5899999999999999999999988544
No 126
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.86 E-value=7.5e-05 Score=60.28 Aligned_cols=107 Identities=13% Similarity=0.198 Sum_probs=64.7
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh-cCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ-LELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~-l~lP~InVlsK~DL 145 (236)
+-|+|||||-+. . .++.. . ++++++|+. ++..|-. .++-.+....+ -+.|.+.|.||+|+
T Consensus 69 l~i~Dt~G~~~~-~----------~~~~~--~-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (184)
T 3ihw_A 69 LLIRDEGGPPEL-Q----------FAAWV--D-AVVFVFSLE---DEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131 (184)
T ss_dssp EEEEECSSSCCH-H----------HHHHC--S-EEEEEEETT---CHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred EEEEECCCChhh-h----------eecCC--C-EEEEEEECc---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 456999998542 2 34332 3 578888965 4444433 22222222111 47899999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
...... -.. . ....++...++...|+++|+++++++++++..+-+.+
T Consensus 132 ~~~~~~---~v~--~-------------------~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 132 SAANPR---VID--D-------------------SRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp BTTBCC---CSC--H-------------------HHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cccccc---ccC--H-------------------HHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 632100 000 0 0111233456667899999999999999999887643
No 127
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.85 E-value=3e-05 Score=62.55 Aligned_cols=110 Identities=12% Similarity=0.189 Sum_probs=55.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh---cCCCEEEEecc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ---LELPHVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~---l~lP~InVlsK 142 (236)
.+.|+|||||-+. +.+.... -.+.. ++++++|+. ++..+- ..++..+..... .+.|.+.|+||
T Consensus 74 ~~~l~Dt~G~~~~-------~~~~~~~-~~~~d-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 74 ELFLLDTAGSDLY-------KEQISQY-WNGVY-YAILVFDVS---SMESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp EEEEEETTTTHHH-------HHHHSTT-CCCCC-EEEEEEETT---CHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred EEEEEECCCcHHH-------HHHHHHH-HhhCc-EEEEEEECC---CHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 4789999998431 1111111 12333 688999965 343332 223322322222 58999999999
Q ss_pred ccccc-chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccC-cccHHHHHHHHHHhh
Q 026576 143 MDLVT-NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK-ESSIRYVLSQIDNCI 216 (236)
Q Consensus 143 ~DLl~-~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d-~~~i~~L~~~Id~~~ 216 (236)
+|+.. .. .+ . .+ ... ++...++ ..++++|+++ ++++.+++..|-+.+
T Consensus 142 ~Dl~~~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 142 TDLPPQRH-QV----R--LD------------MAQ-------DWATTNT-LDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp C--------CC----C--HH------------HHH-------HHHHHTT-CEEEECCC-------CHHHHHHHHHH
T ss_pred cccchhhc-cC----C--HH------------HHH-------HHHHHcC-CEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 99975 22 11 0 00 001 1222334 6899999999 999999999887654
No 128
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.83 E-value=6.6e-05 Score=61.21 Aligned_cols=110 Identities=13% Similarity=0.195 Sum_probs=65.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+.-. ..+ ..++ +.. ++++++|+.. +..+ +..++..+.....-+.|.+.|+||+|+
T Consensus 75 ~l~l~Dt~G~~~~~~---~~~---~~~~--~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 142 (200)
T 2o52_A 75 KLQIWDTAGQERFRS---VTR---SYYR--GAA-GALLVYDITS---RETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142 (200)
T ss_dssp EEEEECCTTHHHHSC---CCH---HHHT--TCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGG
T ss_pred EEEEEcCCCcHhHHH---HHH---HHhc--cCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCc
Confidence 578999999865221 111 2232 333 5788999754 3332 223333333333358999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .. . .. ... ++...++ +.|+++|+++++++++++..|-+.+
T Consensus 143 ~~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 143 DPER-EV----T--FL------------EAS-------RFAQENE-LMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp GGGC-CS----C--HH------------HHH-------HHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cccc-cc----C--HH------------HHH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6432 11 0 00 000 1112223 5899999999999999999887754
No 129
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.83 E-value=4.5e-05 Score=62.54 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=63.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhh-cCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQ-LELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~-l~lP~InVlsK~D 144 (236)
.+.|+|||||-+. +.+....- .+.. ++++++|+.. +..+-.. ++..+..... -+.|.+.|+||+|
T Consensus 85 ~l~l~Dt~G~~~~-------~~~~~~~~-~~~d-~iilV~D~~~---~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D 152 (217)
T 2f7s_A 85 HLQLWDTAGQERF-------RSLTTAFF-RDAM-GFLLMFDLTS---QQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD 152 (217)
T ss_dssp EEEEEEEESHHHH-------HHHHHHHH-TTCC-EEEEEEETTC---HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred EEEEEECCCcHhH-------HhHHHHHh-cCCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence 4789999997541 22222221 2344 5889999753 4443221 1111111111 4789999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.... .. . .. ... ++...++ +.++++|+++++++++++..|-+.+
T Consensus 153 l~~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 153 LPDQR-EV----N--ER------------QAR-------ELADKYG-IPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp CGGGC-CS----C--HH------------HHH-------HHHHHTT-CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ccccc-cc----C--HH------------HHH-------HHHHHCC-CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 96432 11 0 00 001 1112223 5799999999999999999987754
No 130
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.81 E-value=1.1e-05 Score=65.68 Aligned_cols=110 Identities=15% Similarity=0.252 Sum_probs=58.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+....... .+ .+.. ++++++|+.. +..| +..++..+.....-+.|.+.|+||+|+
T Consensus 83 ~~~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl 150 (199)
T 3l0i_B 83 KLQIWDTAGQERFRTITSS------YY--RGAH-GIIVVYDVTD---QESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150 (199)
T ss_dssp EEEEECCTTCTTCCCCSCC----------CCCS-EEEECC-CCC---SHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred EEEEEECCCcHhHHHHHHH------Hh--hcCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhccCCCCEEEEEECccC
Confidence 4789999998764432211 12 2333 5788999764 3332 223333333222338999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+.. ... ..... ++...++ +.++++|+++++++++++..|-+.+
T Consensus 151 ~~~~-~v~---~~~~~----------------------~~~~~~~-~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 151 TTKK-VVD---YTTAK----------------------EFADSLG-IPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp C--C-CCC---SCC-C----------------------HHHHTTT-CCBCCCCC---HHHHHHHHHHTTTT
T ss_pred Cccc-cCC---HHHHH----------------------HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7543 110 00000 1111222 5789999999999999999987654
No 131
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.81 E-value=2.5e-05 Score=64.47 Aligned_cols=121 Identities=11% Similarity=0.097 Sum_probs=67.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+.|+|||||-+.-. ..+. .+ .+.. ++++++|+.. +..|-.. ++-.+.. ..-+.|.+.|.||+|
T Consensus 77 ~l~i~Dt~G~~~~~~---~~~~---~~--~~~d-~~ilv~D~~~---~~s~~~~~~~~~~~i~~-~~~~~piilv~nK~D 143 (205)
T 1gwn_A 77 ELSLWDTSGSPYYDN---VRPL---SY--PDSD-AVLICFDISR---PETLDSVLKKWKGEIQE-FCPNTKMLLVGCKSD 143 (205)
T ss_dssp EEEEEEECCSGGGTT---TGGG---GC--TTCS-EEEEEEETTC---HHHHHHHHHTHHHHHHH-HCTTCEEEEEEECGG
T ss_pred EEEEEeCCCcHhhhH---HHHh---hc--cCCC-EEEEEEECCC---HHHHHHHHHHHHHHHHH-HCCCCCEEEEEechh
Confidence 468999999865211 1100 11 2333 5888999754 4444332 2222221 123899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeecc-CcccHHHHHHHHHHh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~-d~~~i~~L~~~Id~~ 215 (236)
+........++.... .... .. ....++...++...|+++|++ +++++++++..|-+.
T Consensus 144 l~~~~~~~~~~~~~~--------~~~v--~~----~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 144 LRTDVSTLVELSNHR--------QTPV--SY----DQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp GGGCHHHHHHHHTTT--------CCCC--CH----HHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhcccc--------cCCC--CH----HHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 976432222111100 0000 00 011123334556789999998 789999999888664
No 132
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.81 E-value=3e-05 Score=72.73 Aligned_cols=107 Identities=13% Similarity=0.230 Sum_probs=54.3
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-------chhhHHHHHHHHHHHHhhcCCC-EEE
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-------DVTKFISGCMASLSAMVQLELP-HVN 138 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-------dp~~~is~~l~sls~m~~l~lP-~In 138 (236)
..|.|+|||||..+ . +.....++ ... ++++++|+..-. .+... .. +.....+++| .|.
T Consensus 121 ~~~~iiDtPGh~~f-~-----~~~~~~~~--~aD-~~ilVvDa~~g~~e~sf~~~~qt~-e~----l~~~~~~~vp~iiv 186 (467)
T 1r5b_A 121 RRFSLLDAPGHKGY-V-----TNMINGAS--QAD-IGVLVISARRGEFEAGFERGGQTR-EH----AVLARTQGINHLVV 186 (467)
T ss_dssp EEEEECCCCC-----------------TT--SCS-EEEEEEECSTTHHHHTTSTTCCHH-HH----HHHHHHTTCSSEEE
T ss_pred eEEEEEECCCcHHH-H-----HHHHhhcc--cCC-EEEEEEeCCcCccccccCCCCcHH-HH----HHHHHHcCCCEEEE
Confidence 35889999998652 2 22333332 344 689999986421 11211 11 1122347899 788
Q ss_pred EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhc---cC---CeeEEEeeccCcccHHH
Q 026576 139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE---YS---MVSFMPLDLRKESSIRY 207 (236)
Q Consensus 139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d---~~---lv~f~pls~~d~~~i~~ 207 (236)
|+||+|+.... . +.+ ++......+.+++.. |. -+.|+|+|+.+++++.+
T Consensus 187 viNK~Dl~~~~--~------~~~------------~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~ 241 (467)
T 1r5b_A 187 VINKMDEPSVQ--W------SEE------------RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 241 (467)
T ss_dssp EEECTTSTTCS--S------CHH------------HHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred EEECccCCCcc--c------cHH------------HHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence 89999996421 0 000 011111112222222 22 37899999999999875
No 133
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.80 E-value=0.00013 Score=57.30 Aligned_cols=110 Identities=14% Similarity=0.158 Sum_probs=63.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhh--cCCC-EEEEecc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ--LELP-HVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~--l~lP-~InVlsK 142 (236)
.+.++|||||-+. +...+ ..++ +.. ++++++|+.. +..+ +..++-.+..... -+.| .+.|.||
T Consensus 57 ~~~~~Dt~G~~~~---~~~~~---~~~~--~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK 124 (178)
T 2hxs_A 57 TLQIWDIGGQTIG---GKMLD---KYIY--GAQ-GVLLVYDITN---YQSFENLEDWYTVVKKVSEESETQPLVALVGNK 124 (178)
T ss_dssp EEEEEECTTCCTT---CTTHH---HHHT--TCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEEC
T ss_pred EEEEEECCCCccc---cchhh---HHHh--hCC-EEEEEEECCC---HHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEc
Confidence 5789999998652 22222 2232 334 5888999753 3332 2222222222211 2677 6889999
Q ss_pred cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+|+.... .. . .+ ... ++...++ +.++++|+++++++++++..|-+.+
T Consensus 125 ~Dl~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 125 IDLEHMR-TI----K--PE------------KHL-------RFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp GGGGGGC-SS----C--HH------------HHH-------HHHHHHT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccccccc-cc----C--HH------------HHH-------HHHHHcC-CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9996432 11 0 00 001 1112223 5899999999999999999987754
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.80 E-value=0.00012 Score=65.99 Aligned_cols=116 Identities=17% Similarity=0.284 Sum_probs=67.9
Q ss_pred EEEEeCCCceeeeeccc-hH-HHHHHHHhhCCCceEEEEeecCCCcc--chhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026576 69 YLVFDCPGQIELFTHVP-VL-RNFVDHLKSRNFNVCAVYLLDSQFIT--DVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~-~~-~~iv~~L~~~~~~~~~V~LiD~~~~~--dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
..++||||+.+...+.. .+ +..+..+. .... ++++++|+.... +.... ..++..+..... +.|.|.|+||+|
T Consensus 216 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~-~~ad-~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~-~~piilV~NK~D 291 (357)
T 2e87_A 216 YQIIDTPGLLDRPISERNEIEKQAILALR-YLGN-LIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFK-DLPFLVVINKID 291 (357)
T ss_dssp EEEEECTTTSSSCSTTSCHHHHHHHHGGG-GTCS-EEEEEECTTCTTSSCHHHH-HHHHHHHHHHTT-TSCEEEEECCTT
T ss_pred EEEEeCCCccccchhhhhHHHHHHHHHHH-hcCC-EEEEEEeCCccccCCHHHH-HHHHHHHHHhcC-CCCEEEEEECcc
Confidence 68999999987433322 22 12222222 2233 588999965432 33222 122222222222 899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+.... ++.. . .+.+... ...++++|+.+++++++|+..|-+.+.
T Consensus 292 l~~~~-~~~~------------~---------------~~~~~~~-~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 292 VADEE-NIKR------------L---------------EKFVKEK-GLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TCCHH-HHHH------------H---------------HHHHHHT-TCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred cCChH-HHHH------------H---------------HHHHHhc-CCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 97543 2210 0 0111122 257899999999999999999987654
No 135
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.79 E-value=2.5e-05 Score=68.01 Aligned_cols=120 Identities=12% Similarity=0.138 Sum_probs=67.3
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccccc
Q 026576 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.++|||||-+.-. ... ..+ .+.. ++++++|+.. +..+-.. ++-.+.... -+.|.+.|.||+|+.
T Consensus 206 ~l~Dt~G~~~~~~---~~~---~~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 206 GLWDTAGLEDYDR---LRP---LSY--PQTD-VFLICFSLVS---PASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272 (332)
T ss_dssp EEEEECCCGGGTT---TGG---GGC--TTCS-EEEEEEETTC---HHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHH
T ss_pred EEEeCCCchhhhH---HHH---Hhc--cCCC-EEEEEEeCCC---HHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcc
Confidence 3999999854211 110 112 2344 5888999753 4443332 222222222 289999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
........+.... .. .. . .....++...++...|+++|+++++++++++..|-+.+
T Consensus 273 ~~~~~~~~~~~~~-------~~-~v--~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 273 DDKDTIEKLKEKK-------LT-PI--T----YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp TCHHHHHHHHHTT-------CC-CC--C----HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccchhhhccccc-------cc-cc--c----HHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 6542111110000 00 00 0 01112334455667899999999999999999887654
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.78 E-value=0.00011 Score=68.07 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=73.0
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeee-ccchHHHHH-HHHhhCCCceEEEE
Q 026576 38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFT-HVPVLRNFV-DHLKSRNFNVCAVY 105 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~-~~~~~~~iv-~~L~~~~~~~~~V~ 105 (236)
||-|.-+-++.|..+-........+. ....++.|+|||||..--. ....++... ..+.. .. ++++
T Consensus 12 ~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~--ad-~il~ 88 (436)
T 2hjg_A 12 PNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE--AD-VIIF 88 (436)
T ss_dssp TTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH--CS-EEEE
T ss_pred CCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh--CC-EEEE
Confidence 67777777777753210222211111 1134689999999863110 011122222 22222 33 6899
Q ss_pred eecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHH
Q 026576 106 LLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIEL 185 (236)
Q Consensus 106 LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~l 185 (236)
++|+..-..+.+.- + ...+-+.+.|.+.|+||+|+.+...+..+ .
T Consensus 89 vvD~~~~~~~~d~~---~--~~~l~~~~~pvilv~NK~D~~~~~~~~~~----------------~-------------- 133 (436)
T 2hjg_A 89 MVNGREGVTAADEE---V--AKILYRTKKPVVLAVNKLDNTEMRANIYD----------------F-------------- 133 (436)
T ss_dssp EEETTTCSCHHHHH---H--HHHHTTCCSCEEEEEECCCC-----CCCS----------------S--------------
T ss_pred EEeCCCCCCHHHHH---H--HHHHHHcCCCEEEEEECccCccchhhHHH----------------H--------------
Confidence 99986533333311 1 12233579999999999999643211100 0
Q ss_pred hhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 186 VDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 186 i~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
...++-.++|+|+.++.++.+|+..|-+.+.-
T Consensus 134 -~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 134 -YSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp -GGGSSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred -HHcCCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 12244578999999999999999999888753
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.77 E-value=0.00019 Score=66.42 Aligned_cols=121 Identities=16% Similarity=0.134 Sum_probs=69.0
Q ss_pred CCEEEEeCCCceeeeecc------chHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026576 67 DDYLVFDCPGQIELFTHV------PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 140 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~------~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl 140 (236)
.++.++|||||-..-... ....+....+... . ++++++|+..-....+. . ....+.+.+.|.|.|+
T Consensus 228 ~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~a--d-~vllv~d~~~~~~~~~~---~--i~~~l~~~~~~~ilv~ 299 (439)
T 1mky_A 228 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKA--D-VVVIVLDATQGITRQDQ---R--MAGLMERRGRASVVVF 299 (439)
T ss_dssp EEEEESSCSCC-----------CCSCCHHHHHHHHHC--S-EEEEEEETTTCCCHHHH---H--HHHHHHHTTCEEEEEE
T ss_pred EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhC--C-EEEEEEeCCCCCCHHHH---H--HHHHHHHcCCCEEEEE
Confidence 357899999983211100 0011223444332 2 57888898653332221 1 1223345799999999
Q ss_pred cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
||+|+.+.. .. . ..++.+.+.+-+...+...++++|+.++.++.+|+..|.++..
T Consensus 300 NK~Dl~~~~-~~------~---------------~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 300 NKWDLVVHR-EK------R---------------YDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp ECGGGSTTG-GG------C---------------HHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ECccCCCch-hh------H---------------HHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999997543 10 0 0111112222233334578999999999999999999988654
No 138
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.77 E-value=0.00015 Score=57.48 Aligned_cols=110 Identities=14% Similarity=0.205 Sum_probs=65.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
...++|||||-+. +.+.... -.+.. ++++++|+.. +..+ +..++..+.....-+.|.+.|+||+|+
T Consensus 60 ~~~l~Dt~G~~~~-------~~~~~~~-~~~~d-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 127 (186)
T 2bme_A 60 KLQIWDTAGQERF-------RSVTRSY-YRGAA-GALLVYDITS---RETYNALTNWLTDARMLASQNIVIILCGNKKDL 127 (186)
T ss_dssp EEEEEEECCSGGG-------HHHHHTT-STTCS-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEeCCCcHHH-------HHHHHHH-HhcCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 4579999997542 1221111 12333 5889999764 3332 223333333333468999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .. . .. ... ++...++ +.++++|+.+++++++++..+-+.+
T Consensus 128 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 128 DADR-EV----T--FL------------EAS-------RFAQENE-LMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp GGGC-CS----C--HH------------HHH-------HHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccc-cc----C--HH------------HHH-------HHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 6432 11 0 00 000 1112223 5899999999999999999887654
No 139
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.76 E-value=0.00031 Score=56.55 Aligned_cols=108 Identities=11% Similarity=0.130 Sum_probs=61.3
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhh---cCCCEEEEeccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQ---LELPHVNILSKM 143 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~---l~lP~InVlsK~ 143 (236)
+-|+|||||-+ |.. +. ..++ +.. ++++++|.. ++..|-.. ++-.+..... -+.|.|.|.||+
T Consensus 71 l~i~Dt~G~~~-~~~---~~---~~~~--~~~-~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 137 (187)
T 3c5c_A 71 LRVMDTADLDT-PRN---CE---RYLN--WAH-AFLVVYSVD---SRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137 (187)
T ss_dssp EEEEECCC----CCC---TH---HHHT--TCS-EEEEEEETT---CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECG
T ss_pred EEEEECCCCCc-chh---HH---HHHh--hCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECc
Confidence 56899999865 322 12 2342 233 467778865 44444332 2222222221 489999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeec-cCcccHHHHHHHHHHhh
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDL-RKESSIRYVLSQIDNCI 216 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~-~d~~~i~~L~~~Id~~~ 216 (236)
|+.... +. . .+ ... ++...++ +.|+++|+ ++++++++++..|-+.+
T Consensus 138 Dl~~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 138 DMAQYR-QV----T--KA------------EGV-------ALAGRFG-CLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp GGGGGC-SS----C--HH------------HHH-------HHHHHHT-CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred chhhcC-cc----C--HH------------HHH-------HHHHHcC-CcEEEEeecCccccHHHHHHHHHHHH
Confidence 996432 11 0 00 001 1112233 48999999 89999999999886643
No 140
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.76 E-value=6.5e-05 Score=62.29 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=61.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+.-.... ..+ .+.. ++++++|+.. +..|- ..++..+.....-+.|.+.|+||+|+
T Consensus 63 ~~~i~Dt~G~~~~~~~~~------~~~--~~~d-~vilV~D~~~---~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl 130 (223)
T 3cpj_B 63 KAQIWDTAGQERYRAITS------AYY--RGAV-GALIVYDISK---SSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130 (223)
T ss_dssp EEEEECCTTTTTTTCCCG------GGT--TTCC-EEEEEEC-CC---HHHHHHHHHHHHHHHHHCC--CEEEEEECCGGG
T ss_pred EEEEEECCCccchhhhHH------HHh--ccCC-EEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 468999999865321111 112 2333 5788899653 33332 22332232222347999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... ++ . .+ ... ++...++ +.|+++|+++++++++++..|-+.+
T Consensus 131 ~~~~-~v----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 131 AHLR-AV----P--TE------------ESK-------TFAQENQ-LLFTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp GGGC-CS----C--HH------------HHH-------HHHHHTT-CEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred cccc-cc----C--HH------------HHH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6532 11 0 00 000 1122233 5899999999999999998887654
No 141
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.75 E-value=8.7e-05 Score=59.71 Aligned_cols=110 Identities=12% Similarity=0.166 Sum_probs=64.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+.- ...-..+ .+.. ++++++|+.. +..+ +..++-.+.....-+.|.+.|.||+|+
T Consensus 73 ~~~i~Dt~G~~~~~------~~~~~~~--~~~d-~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 140 (191)
T 3dz8_A 73 KLQIWDTAGQERYR------TITTAYY--RGAM-GFILMYDITN---EESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140 (191)
T ss_dssp EEEEECHHHHHHCH------HHHHHHH--TTCC-EEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEeCCChHHHH------HHHHHHH--ccCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 47899999975421 1112223 2344 5888999753 3333 222322232222258999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .. . .+ ... ++...++ ..++++|+++++++++++..|-+.+
T Consensus 141 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 141 EEER-VV----P--TE------------KGQ-------LLAEQLG-FDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp GGGC-CS----C--HH------------HHH-------HHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccc-cc----C--HH------------HHH-------HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6432 11 0 00 001 1112223 4899999999999999999887654
No 142
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.75 E-value=0.0012 Score=53.52 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=69.4
Q ss_pred CEEEEeCCCceeeeec---cchHHHHH-HHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026576 68 DYLVFDCPGQIELFTH---VPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~---~~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
...++||||+.+.-.. +...++.+ ..++.....-.++++.|+..-..... .-+ .....+.++|.+.|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~---~~~--~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD---QQM--IEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH---HHH--HHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhH---HHH--HHHHHHcCCCeEEEEecc
Confidence 5788999998642110 01122222 22332112234677888765322211 111 122235799999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhccc
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
|+++.. +.. +....+..++.++.. +.++|.|+.++.+++.++..|.+....+
T Consensus 148 D~~s~~-~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 148 DKLASG-ARK-----------------------AQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp GGSCHH-HHH-----------------------HHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred cCCCch-hHH-----------------------HHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 987542 110 001122234456664 7899999999999999999998876544
No 143
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.75 E-value=4.6e-05 Score=70.66 Aligned_cols=110 Identities=14% Similarity=0.294 Sum_probs=60.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhh---HHHHHHHHHHHHhhcCCC-EEEEecc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK---FISGCMASLSAMVQLELP-HVNILSK 142 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~---~is~~l~sls~m~~l~lP-~InVlsK 142 (236)
..+.|+|||||.. ..+.....+ .... ++++++|+..- .-.. ......-.+.....+++| .|.|+||
T Consensus 84 ~~~~iiDtpG~~~------f~~~~~~~~--~~aD-~~ilVvDa~~g-sfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK 153 (435)
T 1jny_A 84 YFFTIIDAPGHRD------FVKNMITGA--SQAD-AAILVVSAKKG-EYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 153 (435)
T ss_dssp CEEEECCCSSSTT------HHHHHHHTS--SCCS-EEEEEEECSTT-HHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred eEEEEEECCCcHH------HHHHHHhhh--hhcC-EEEEEEECCCC-ccccccccchHHHHHHHHHHHcCCCeEEEEEEc
Confidence 4689999999765 222333333 2344 68999998751 0000 000111112222346775 6788999
Q ss_pred cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHH
Q 026576 143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIR 206 (236)
Q Consensus 143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~ 206 (236)
+|+.... . +. ..+......+.+++..++. +.|+|+|+.+++++.
T Consensus 154 ~Dl~~~~--~------~~------------~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~ 201 (435)
T 1jny_A 154 MDLTEPP--Y------DE------------KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT 201 (435)
T ss_dssp GGGSSST--T------CH------------HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred ccCCCcc--c------cH------------HHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence 9997531 0 00 0112222233344444443 789999999999986
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.74 E-value=0.00014 Score=64.17 Aligned_cols=124 Identities=20% Similarity=0.254 Sum_probs=65.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh--hcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~--~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-.+. ...++.+....- .+.. ++++++|+..-...... ..+.-.+..+. .-+.|.+.|+||+|+
T Consensus 53 ~l~i~Dt~G~~~~~--~~~~~~~~~~~~-~~ad-~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl 127 (307)
T 3r7w_A 53 TLNLWDCGGQDVFM--ENYFTKQKDHIF-QMVQ-VLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDL 127 (307)
T ss_dssp EEEEEEECCSHHHH--HHHHTTTHHHHH-TTCS-EEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEECCCcHHHh--hhhhhhHHHHHh-ccCC-EEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccc
Confidence 46899999985431 001111111111 2344 68999998654332222 11111121111 238999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHH-HHHhhc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQ-IDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~-Id~~~~ 217 (236)
.+.. .-.. .+......+.++...++. +.|++.|+.+ +++.+++.. +.+.+.
T Consensus 128 ~~~~-~r~~-------------------~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 128 VQLD-KREE-------------------LFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp SCHH-HHHH-------------------HHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred cchh-hhhH-------------------HHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 7632 1100 001111223345567775 8999999999 566555544 343333
No 145
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.73 E-value=4.6e-05 Score=63.12 Aligned_cols=123 Identities=9% Similarity=0.034 Sum_probs=69.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH---HHHHHHHHHhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS---GCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is---~~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+.|+|||||-+.-.... . .+ .+.. ++++++|+. ++..|-. .++-.+... .-+.|.+.|.||+|
T Consensus 76 ~l~i~Dt~G~~~~~~~~~---~---~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~D 142 (214)
T 3q3j_B 76 ELSLWDTSGSPYYDNVRP---L---CY--SDSD-AVLLCFDIS---RPETVDSALKKWRTEILDY-CPSTRVLLIGCKTD 142 (214)
T ss_dssp EEEEEEECCSGGGTTTGG---G---GC--TTCS-EEEEEEETT---CTHHHHHHHTHHHHHHHHH-CTTSEEEEEEECGG
T ss_pred EEEEEECCCCHhHHHHHH---H---Hc--CCCe-EEEEEEECc---CHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChh
Confidence 367899999865321111 0 12 2344 588899975 4444433 232222222 23899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCccc-HHHHHHHHHHhhc
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS-IRYVLSQIDNCIQ 217 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~-i~~L~~~Id~~~~ 217 (236)
+.........+.. .-..... .....++...++...|+++|++++++ +++++..+-+.+-
T Consensus 143 l~~~~~~~~~~~~--------~~~~~v~------~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 143 LRTDLSTLMELSH--------QKQAPIS------YEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp GGGCHHHHHHHHH--------TTCCCCC------HHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhcc--------cccCccC------HHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 9764311111000 0000000 01112334455666999999999998 9999999877654
No 146
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.70 E-value=0.0004 Score=67.41 Aligned_cols=110 Identities=16% Similarity=0.286 Sum_probs=68.0
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
+-|+|||||.. | .....+.++..+ ++++++|+..-..+... ..+.. ....++|.|.|+||+|+...
T Consensus 73 l~liDTPGh~d-F-----~~ev~~~l~~aD---~aILVVDa~~gv~~qt~-~~~~~----~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 73 LNFIDTPGHVD-F-----SYEVSRSLAACE---GALLVVDAGQGVEAQTL-ANCYT----AMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp EEEEECCCCGG-G-----HHHHHHHHHHCS---EEEEEEETTTCCCTHHH-HHHHH----HHHTTCEEEEEEECTTSTTC
T ss_pred EEEEECCCchH-H-----HHHHHHHHHHCC---EEEEEEECCCCCCHHHH-HHHHH----HHHCCCCEEEeeeccCcccc
Confidence 46999999755 2 233444554433 58899998654444332 22222 23579999999999999653
Q ss_pred hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
. . +.... .+.+.+ .+....++++|+.++.+++.|+..|-+.+.-
T Consensus 139 ~--~--------~~v~~---------------ei~~~l-g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 139 D--P--------ERVAE---------------EIEDIV-GIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp C--H--------HHHHH---------------HHHHHT-CCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred c--H--------HHHHH---------------HHHHHh-CCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 2 1 00001 111111 1111358999999999999999999887653
No 147
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.68 E-value=0.00012 Score=60.28 Aligned_cols=110 Identities=13% Similarity=0.163 Sum_probs=65.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+.-.. .+ ..++ +.. ++++++|+.. +..+- ..++..+.... -+.|.+.|.||+|+
T Consensus 65 ~~~i~Dt~G~~~~~~~---~~---~~~~--~~~-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl 131 (221)
T 3gj0_A 65 KFNVWDTAGQEKFGGL---RD---GYYI--QAQ-CAIIMFDVTS---RVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDI 131 (221)
T ss_dssp EEEEEEECSGGGTSCC---CH---HHHT--TCC-EEEEEEETTC---HHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTS
T ss_pred EEEEEeCCChHHHhHH---HH---HHHh--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcc
Confidence 4688999998543221 11 1232 333 5788899764 33332 22222222221 28999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
.+.. ...... .+ ....+ ..++++|++++.++++++..|-+.+.-.
T Consensus 132 ~~~~-~~~~~~-----------------~~----------~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 132 KDRK-VKAKSI-----------------VF----------HRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp SSCS-SCGGGC-----------------CH----------HHHHT-CEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred cccc-ccHHHH-----------------HH----------HHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 7543 111000 00 01112 5899999999999999999988865443
No 148
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.65 E-value=0.00065 Score=64.86 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=42.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.|+|||||..+ . ......++. .. ++|+++|+..-..+... .+ +....+.++|.+.|+||+|+..
T Consensus 83 ~i~liDTPG~~df-~-----~~~~~~l~~--aD-~allVvDa~~g~~~~t~---~~--~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 83 LINLLDTPGHADF-T-----EDTYRTLTA--VD-SALMVIDAAKGVEPRTI---KL--MEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEEECCCCSTTC-C-----HHHHHGGGG--CS-EEEEEEETTTCSCHHHH---HH--HHHHHTTTCCEEEEEECTTSCC
T ss_pred EEEEEECCCchhH-H-----HHHHHHHHh--CC-EEEEEEeCCCCCCHHHH---HH--HHHHHHcCCCEEEEEeCCCCcc
Confidence 5789999998662 2 123334433 33 58999999763333322 11 2334457899999999999975
Q ss_pred c
Q 026576 148 N 148 (236)
Q Consensus 148 ~ 148 (236)
.
T Consensus 149 ~ 149 (528)
T 3tr5_A 149 R 149 (528)
T ss_dssp S
T ss_pred c
Confidence 3
No 149
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.65 E-value=0.0003 Score=63.08 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=60.8
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
..+++|+||||..+ ....+ . .... ++++++|+........ +. . -..+.|.+.|+||+|+
T Consensus 148 ~~~i~liDTpG~~~------~~~~~---~--~~aD-~vl~Vvd~~~~~~~~~-l~----~----~~~~~p~ivv~NK~Dl 206 (341)
T 2p67_A 148 GYDVVIVETVGVGQ------SETEV---A--RMVD-CFISLQIAGGGDDLQG-IK----K----GLMEVADLIVINKDDG 206 (341)
T ss_dssp TCSEEEEEEECCTT------HHHHH---H--TTCS-EEEEEECC------CC-CC----H----HHHHHCSEEEECCCCT
T ss_pred CCCEEEEeCCCccc------hHHHH---H--HhCC-EEEEEEeCCccHHHHH-HH----H----hhhcccCEEEEECCCC
Confidence 45899999999432 11111 2 2334 4788999853221110 00 0 1136799999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhc--cC-CeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YS-MVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d--~~-lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.... .+...+ . ++...+ +.+.. -+ ...++|+|+.++++++.|+..|.+...
T Consensus 207 ~~~~-~~~~~~--------~-----------~l~~~l-~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 207 DNHT-NVAIAR--------H-----------MYESAL-HILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp TCHH-HHHHHH--------H-----------HHHHHH-HHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CChH-HHHHHH--------H-----------HHHHHH-HhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 6532 121100 0 111110 11110 01 257899999999999999999988654
No 150
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.63 E-value=0.00012 Score=62.58 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=70.2
Q ss_pred CCEEEEeCCCceeeeec--cchHHHHHHHHh--hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026576 67 DDYLVFDCPGQIELFTH--VPVLRNFVDHLK--SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~--~~~~~~iv~~L~--~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
..+.|+||||+...-.. ....+.+.+.+. ..+.. ++++++|+..+..-...+-..+...--.--.+.|.|.|.||
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d-~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK 148 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPH-ALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRK 148 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCS-EEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCC-EEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEch
Confidence 35799999996421111 111223333331 23444 68999998754433322222221110001127899999999
Q ss_pred cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccC-----cccHHHHHHHHHHhhc
Q 026576 143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK-----ESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d-----~~~i~~L~~~Id~~~~ 217 (236)
+||... .+++++.. .. ...+.++++.++. ++++++... ++++.+|+..|++.+.
T Consensus 149 ~Dl~~~--~~~~~l~~-----------~~-------~~~l~~l~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 149 EDLAGG--SLHDYVSN-----------TE-------NRALRELVAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp GGGTTC--CHHHHHHH-----------CC-------CHHHHHHHHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCC--CHHHHHhh-----------cc-------cHHHHHHHHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 999643 23333221 00 0123345555553 566777655 5899999999999775
No 151
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.62 E-value=0.00048 Score=66.91 Aligned_cols=108 Identities=17% Similarity=0.268 Sum_probs=68.1
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
+-|+|||||.. |+ ....+.++.. . ++++++|+..-..+... ..+.. ....++|.|.|+||+|+...
T Consensus 75 inliDTPGh~d-F~-----~ev~r~l~~a--D-~aILVVDa~~gv~~qt~-~~~~~----a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 75 LHLIDTPGHVD-FS-----YEVSRALAAC--E-GALLLIDASQGIEAQTV-ANFWK----AVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp EEEECCCCSGG-GH-----HHHHHHHHTC--S-EEEEEEETTTBCCHHHH-HHHHH----HHHTTCEEEEEEECTTSTTC
T ss_pred EEEEECCCcHh-HH-----HHHHHHHHhC--C-EEEEEEECCCCccHHHH-HHHHH----HHHCCCCEEEEEeccCcccc
Confidence 34999999876 22 2334445433 3 58889998765444432 22222 23579999999999999643
Q ss_pred hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
. . +...+++ . +.+++ ..++++|+.++.++..|+..|-+.+.-
T Consensus 141 ~--~--------~~v~~el---------------~---~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 141 D--V--------DRVKKQI---------------E---EVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp C--H--------HHHHHHH---------------H---HTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred C--H--------HHHHHHH---------------H---HhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 2 1 1111111 1 11222 358999999999999999998877653
No 152
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.60 E-value=0.00047 Score=64.77 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=75.2
Q ss_pred ChHHHHHHHHHHHHh-h----------HHHHHHHhcccCCCCEEEEeCCCceeeeeccchHHHH-HHHH-hh-CCCceEE
Q 026576 38 PNGGLIYCMEHLEDN-L----------DDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF-VDHL-KS-RNFNVCA 103 (236)
Q Consensus 38 PNGalv~~me~l~~n-~----------~~wl~~~i~~~~~~~Yil~D~PGQiElf~~~~~~~~i-v~~L-~~-~~~~~~~ 103 (236)
||.|.-.-++.|... . .++....+. .....+.|+||||+-+. .+....+ +++. .. .+.. ++
T Consensus 233 ~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~-~~g~~v~liDT~G~~~~---~~~ve~~gi~~~~~~~~~aD-~v 307 (462)
T 3geh_A 233 PNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLV-VGGIPVQVLDTAGIRET---SDQVEKIGVERSRQAANTAD-LV 307 (462)
T ss_dssp TTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEE-ETTEEEEECC-----------------------CCCCSCS-EE
T ss_pred CCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEE-ECCEEEEEEECCccccc---hhHHHHHHHHHHhhhhhcCC-EE
Confidence 788998888888753 1 023332222 21346889999998662 2222221 1111 11 2334 58
Q ss_pred EEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026576 104 VYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI 183 (236)
Q Consensus 104 V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~ 183 (236)
++++|+..-..... ..++. .+ -+.|.|.|+||+|+.+.. ....
T Consensus 308 l~VvD~s~~~~~~~---~~i~~---~l-~~~piivV~NK~Dl~~~~-~~~~----------------------------- 350 (462)
T 3geh_A 308 LLTIDAATGWTTGD---QEIYE---QV-KHRPLILVMNKIDLVEKQ-LITS----------------------------- 350 (462)
T ss_dssp EEEEETTTCSCHHH---HHHHH---HH-TTSCEEEEEECTTSSCGG-GSTT-----------------------------
T ss_pred EEEeccCCCCCHHH---HHHHH---hc-cCCcEEEEEECCCCCcch-hhHH-----------------------------
Confidence 99999865322222 11111 11 247999999999997644 1110
Q ss_pred HHhhcc-CCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026576 184 ELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 220 (236)
Q Consensus 184 ~li~d~-~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e 220 (236)
+.++ ....++++|++++++++.|+..|-+.+....
T Consensus 351 --~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 351 --LEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp --CCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred --HHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 0111 2357899999999999999999998876643
No 153
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.60 E-value=0.00015 Score=67.72 Aligned_cols=142 Identities=10% Similarity=0.020 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcc---------cCCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeec
Q 026576 38 PNGGLIYCMEHLEDNLDDWLAEELDN---------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 108 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~---------~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD 108 (236)
||.|.-.-++.|..+- + ...... ...-.+.|+|||||-++-.. . -..+ .+.. ++++++|
T Consensus 331 ~nvGKSsLl~~l~~~~--~-~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~---~~~~--~~ad-~~i~V~D 398 (497)
T 3lvq_E 331 DAAGKTTILYKLKLGQ--S-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL---W---RHYY--TGTQ-GLIFVVD 398 (497)
T ss_dssp TTSSHHHHHHHHHHSS--C-CCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGG---G---GGGG--TTCC-EEEEEEE
T ss_pred CCCCHHHHHHHHhcCC--C-CCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHH---H---HHHh--ccCC-EEEEEEE
Confidence 7888887777775431 0 000000 11235799999998663321 1 1112 2333 6899999
Q ss_pred CCCccchhhHHH--HHHHHHHHHh-hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHH
Q 026576 109 SQFITDVTKFIS--GCMASLSAMV-QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIEL 185 (236)
Q Consensus 109 ~~~~~dp~~~is--~~l~sls~m~-~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~l 185 (236)
+.. +..|-. ..+..+.... .-+.|.|.|+||+||.+.. .. ..+...+... .
T Consensus 399 ~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~--------~~~~~~~~~~--------------~ 452 (497)
T 3lvq_E 399 CAD---RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KP--------HEIQEKLGLT--------------R 452 (497)
T ss_dssp TTC---GGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC-CH--------HHHHHHTTCT--------------T
T ss_pred Ccc---hhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC-CH--------HHHHHHhchh--------------h
Confidence 764 333322 2222221111 1389999999999996532 11 1111111100 0
Q ss_pred hhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 186 VDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 186 i~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
. ......++++|+++++++++++..|-+.+.-
T Consensus 453 ~-~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 453 I-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp C-CSSCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred h-hcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 0 1123679999999999999999999887654
No 154
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.59 E-value=0.00033 Score=66.24 Aligned_cols=110 Identities=13% Similarity=0.138 Sum_probs=66.7
Q ss_pred CEEEEeCCCce-eeeecc--chHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQI-ELFTHV--PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQi-Elf~~~--~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+.|+|||||. +.-... -..++....++.. . ++++++|+..-.+.... -++. .+ -+.|.|.|+||+|
T Consensus 292 ~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~a--D-~vl~VvD~s~~~s~~~~---~il~---~l-~~~piivV~NK~D 361 (482)
T 1xzp_A 292 LFRIVDTAGVRSETNDLVERLGIERTLQEIEKA--D-IVLFVLDASSPLDEEDR---KILE---RI-KNKRYLVVINKVD 361 (482)
T ss_dssp EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHC--S-EEEEEEETTSCCCHHHH---HHHH---HH-TTSSEEEEEEECS
T ss_pred EEEEEECCCccccchhhHHHHHHHHHHHHhhcc--c-EEEEEecCCCCCCHHHH---HHHH---Hh-cCCCEEEEEECcc
Confidence 57999999987 522111 1123444556443 3 58999997554333321 1111 12 2889999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+.... .. + ++ .+ ... + -..++++|++++++++.|+..|.+.+.
T Consensus 362 L~~~~-~~--------~----~~--------~~-------~~~-~-~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 362 VVEKI-NE--------E----EI--------KN-------KLG-T-DRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp SCCCC-CH--------H----HH--------HH-------HHT-C-STTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred ccccc-CH--------H----HH--------HH-------Hhc-C-CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 96421 00 0 00 01 111 1 156899999999999999999988643
No 155
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.59 E-value=0.00029 Score=65.22 Aligned_cols=143 Identities=12% Similarity=0.160 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeee--ccchHHHHHHHHhhCCCceEEEE
Q 026576 38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFT--HVPVLRNFVDHLKSRNFNVCAVY 105 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~--~~~~~~~iv~~L~~~~~~~~~V~ 105 (236)
||-|..+-++-|..+-.....+.... .....+.|+|||||.+.-. ....++...... -.+.. ++++
T Consensus 10 pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~-~~~ad-~il~ 87 (439)
T 1mky_A 10 PNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNM-IREAD-LVLF 87 (439)
T ss_dssp TTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHH-HTTCS-EEEE
T ss_pred CCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHH-HHhCC-EEEE
Confidence 78888888888874321222222221 1123578999999864211 112233322222 12344 6899
Q ss_pred eecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026576 106 LLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE 184 (236)
Q Consensus 106 LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~ 184 (236)
++|+..-..+. ..+..++ -+.+.|.+.|.||+|+.+.. . ... . .+
T Consensus 88 V~D~~~~~~~~d~~i~~~l------~~~~~p~ilv~NK~D~~~~~---~-----------~~~-------~-------~~ 133 (439)
T 1mky_A 88 VVDGKRGITKEDESLADFL------RKSTVDTILVANKAENLREF---E-----------REV-------K-------PE 133 (439)
T ss_dssp EEETTTCCCHHHHHHHHHH------HHHTCCEEEEEESCCSHHHH---H-----------HHT-------H-------HH
T ss_pred EEECCCCCCHHHHHHHHHH------HHcCCCEEEEEeCCCCcccc---H-----------HHH-------H-------HH
Confidence 99986532222 2333222 23589999999999984210 0 000 0 01
Q ss_pred HhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+ ...++..++|+|+.++.++.+|+..|-+.+.
T Consensus 134 ~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 134 L-YSLGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp H-GGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred H-HhcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 1 1234457899999999999999999987765
No 156
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.56 E-value=0.0013 Score=64.69 Aligned_cols=43 Identities=7% Similarity=0.047 Sum_probs=33.1
Q ss_pred HHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026576 178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 220 (236)
Q Consensus 178 l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e 220 (236)
+...+.+.+....++..++.|+.++.++..|+.+|-+.++--.
T Consensus 242 ~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~ 284 (691)
T 1dar_A 242 LVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPL 284 (691)
T ss_dssp HHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChh
Confidence 4444555555556678888899999999999999999886543
No 157
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.54 E-value=0.00014 Score=63.38 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=40.5
Q ss_pred CCEEEEeCCCceeeeec------cchHHH-HHHHHhhCCCceEEEEeecCCC--ccchhh-HHHHHHHHHHHHhhcCCCE
Q 026576 67 DDYLVFDCPGQIELFTH------VPVLRN-FVDHLKSRNFNVCAVYLLDSQF--ITDVTK-FISGCMASLSAMVQLELPH 136 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~------~~~~~~-iv~~L~~~~~~~~~V~LiD~~~--~~dp~~-~is~~l~sls~m~~l~lP~ 136 (236)
.++.++||||+.+.... ...+.. ....+. +.. ++++++|+.. +..... .+ +...-..+.|.
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d-~iilvvd~~~~~~~~~~~~~i------~~~~~~~~~~~ 201 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK--KQN-AIIVAVTPANTDLANSDALQL------AKEVDPEGKRT 201 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHH--STT-EEEEEEEESSSCSTTCSHHHH------HHHHCSSCSSE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHc--CCC-eEEEEEEecCcchhhhHHHHH------HHHhCCCCCcE
Confidence 47999999998653211 011222 233332 234 4777888632 222221 22 12223468999
Q ss_pred EEEecccccccch
Q 026576 137 VNILSKMDLVTNK 149 (236)
Q Consensus 137 InVlsK~DLl~~~ 149 (236)
+.|+||+|+....
T Consensus 202 i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 202 IGVITKLDLMDKG 214 (315)
T ss_dssp EEEEECTTSSCSS
T ss_pred EEEEcCcccCCcc
Confidence 9999999998654
No 158
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.50 E-value=0.002 Score=52.49 Aligned_cols=78 Identities=13% Similarity=0.228 Sum_probs=43.2
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH----hhcCCCEEEEecc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM----VQLELPHVNILSK 142 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m----~~l~lP~InVlsK 142 (236)
..+.++|||||-+ ++......+..- ....-++++++|+....+.-.-+..++..+... ..-+.|.+.|.||
T Consensus 55 ~~~~l~Dt~G~~~---~~~~~~~~~~~~--~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 129 (218)
T 1nrj_B 55 SGVTLVDFPGHVK---LRYKLSDYLKTR--AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 129 (218)
T ss_dssp SSCEEEECCCCGG---GTHHHHHHHHHH--GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEEC
T ss_pred ceEEEEECCCcHH---HHHHHHHHHHhc--cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEc
Confidence 3689999999844 222233322221 111135799999872111112222333333222 2358999999999
Q ss_pred cccccch
Q 026576 143 MDLVTNK 149 (236)
Q Consensus 143 ~DLl~~~ 149 (236)
+|+....
T Consensus 130 ~Dl~~~~ 136 (218)
T 1nrj_B 130 SELFTAR 136 (218)
T ss_dssp TTSTTCC
T ss_pred hHhcccC
Confidence 9998653
No 159
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.48 E-value=0.00078 Score=54.75 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=64.2
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh-cCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ-LELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~-l~lP~InVlsK~DL 145 (236)
..++|||||-... ..++. ..++. .. ++++++|+. ++..|- ..++..+..... .+.|.|.|.||+|+
T Consensus 74 l~i~Dt~g~~~~~---~~~~~--~~~~~--~d-~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 142 (195)
T 3cbq_A 74 LVVYDIWEQGDAG---GWLRD--HCLQT--GD-AFLIVFSVT---DRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142 (195)
T ss_dssp EEEECCCCCSGGG---HHHHH--HHHHH--CS-EEEEEEETT---CHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred EEEEecCCCccch---hhhHH--Hhhcc--CC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhc
Confidence 4678999996532 11222 11222 23 578888864 344332 223322222111 48999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.... .. . .+ ... ++...++ ..|+++|+.+++++++++..|-+.+.
T Consensus 143 ~~~~-~v----~--~~------------~~~-------~~a~~~~-~~~~e~Sa~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 143 ARSR-EV----S--LE------------EGR-------HLAGTLS-CKHIETSAALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp TTTC-CS----C--HH------------HHH-------HHHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cccC-Cc----C--HH------------HHH-------HHHHHhC-CEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 6532 11 0 00 001 1112233 58999999999999999999877653
No 160
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.44 E-value=0.00036 Score=57.31 Aligned_cols=117 Identities=12% Similarity=0.173 Sum_probs=67.0
Q ss_pred HHHHHHhcccCCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCC
Q 026576 55 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 134 (236)
Q Consensus 55 ~wl~~~i~~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~l 134 (236)
+|+.+.+......+++++|||||+- .+.. . ..+. .++++++|+...... ... .. -..+.
T Consensus 97 ~~~~~~~~~~~~~d~iiidt~G~~~----~~~~------~-~~~~-~~~i~vvd~~~~~~~---~~~----~~--~~~~~ 155 (221)
T 2wsm_A 97 HMIYHRLKKFSDCDLLLIENVGNLI----CPVD------F-DLGE-NYRVVMVSVTEGDDV---VEK----HP--EIFRV 155 (221)
T ss_dssp HHHHTTGGGGTTCSEEEEEEEEBSS----GGGG------C-CCSC-SEEEEEEEGGGCTTH---HHH----CH--HHHHT
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCC----CCch------h-cccc-CcEEEEEeCCCcchh---hhh----hh--hhhhc
Confidence 3444444322256899999999821 1110 1 1122 357889998654321 110 00 12478
Q ss_pred CEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHH
Q 026576 135 PHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 135 P~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id 213 (236)
|.+.|+||+|+.+... . ..+. +. +.+..++ ...++++|+.++++++.++..|.
T Consensus 156 ~~iiv~NK~Dl~~~~~-~------~~~~---------------~~----~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~ 209 (221)
T 2wsm_A 156 ADLIVINKVALAEAVG-A------DVEK---------------MK----ADAKLINPRAKIIEMDLKTGKGFEEWIDFLR 209 (221)
T ss_dssp CSEEEEECGGGHHHHT-C------CHHH---------------HH----HHHHHHCTTSEEEECBTTTTBTHHHHHHHHH
T ss_pred CCEEEEecccCCcchh-h------HHHH---------------HH----HHHHHhCCCCeEEEeecCCCCCHHHHHHHHH
Confidence 9999999999864210 0 0011 01 1111223 36899999999999999999998
Q ss_pred Hhhcc
Q 026576 214 NCIQW 218 (236)
Q Consensus 214 ~~~~y 218 (236)
+.+..
T Consensus 210 ~~~~~ 214 (221)
T 2wsm_A 210 GILNV 214 (221)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 86543
No 161
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.44 E-value=0.00013 Score=65.70 Aligned_cols=120 Identities=9% Similarity=0.130 Sum_probs=65.2
Q ss_pred CCEEEEeCCCceeeee---ccc---hHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026576 67 DDYLVFDCPGQIELFT---HVP---VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 140 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~---~~~---~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl 140 (236)
.++.|+||||+...-. ..+ ..+.++...-+ +...++++++|+..-........ + +...-..+.|.|.|+
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~~~~~~~~~~-i---~~~~~~~~~~~i~V~ 204 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDALK-V---AKEVDPQGQRTIGVI 204 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTSCGGGCHHHH-H---HHHHCTTCTTEEEEE
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCCccchhHHHH-H---HHHhCcCCCceEEEe
Confidence 4799999999765322 111 23333333222 34456777788754222222110 0 122234689999999
Q ss_pred cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026576 141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
||+|++........++. ... .-...+...+++.|+.+++++..++..+.+-
T Consensus 205 NK~Dl~~~~~~~~~~~~-----------~~~-------------~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVLE-----------NKL-------------LPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp ECGGGSCTTCCCHHHHT-----------TCS-------------SCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred ccccccCcchhHHHHHh-----------CCc-------------ccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 99999864311111111 000 0001233567788888888888888877663
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.43 E-value=0.0016 Score=59.22 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=78.1
Q ss_pred CCC-hHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeecc--chHHHHHHHHhhCCCceE
Q 026576 36 LGP-NGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHV--PVLRNFVDHLKSRNFNVC 102 (236)
Q Consensus 36 LGP-NGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~--~~~~~iv~~L~~~~~~~~ 102 (236)
+|| |.|..+-++.|.... -...+.... +....+.++||||++.-..+. ...+...+.+. ... +
T Consensus 185 vG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~--~aD-~ 260 (364)
T 2qtf_A 185 VGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAK--YSD-A 260 (364)
T ss_dssp ECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGG--GSS-E
T ss_pred ECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHH--hCC-E
Confidence 465 446777777776432 111111110 112356889999986521221 11223333332 233 5
Q ss_pred EEEeecCCCccc-hhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026576 103 AVYLLDSQFITD-VTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS 181 (236)
Q Consensus 103 ~V~LiD~~~~~d-p~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~ 181 (236)
+++++|+..-.. ...-+..+.-.+...-..+.|.|.|.||+|+.+.. ... + .....+
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~--~~~-------------------~-~~~~~~ 318 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD--LYK-------------------K-LDLVEK 318 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC--HHH-------------------H-HHHHHH
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch--HHH-------------------H-HHHHHH
Confidence 788999754221 11111111111111111478999999999997532 000 0 000011
Q ss_pred HHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 182 LIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 182 l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
++.-+. ..-..++|+|+.++++++.|+..|.+.+..
T Consensus 319 l~~~l~-~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 319 LSKELY-SPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHC-SCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHhc-CCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 111110 012468999999999999999999886654
No 163
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.36 E-value=0.0035 Score=61.74 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=42.3
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..+.|+|||||..+ + ......++.. . .+++++|+..-..+... . + +....+.++|.+.|+||+|+.
T Consensus 82 ~~i~liDTPG~~df-~-----~~~~~~l~~a--D-~aIlVvDa~~gv~~qt~-~--~--~~~~~~~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 82 HRINIIDTPGHVDF-T-----IEVERSMRVL--D-GAVMVYCAVGGVQPQSE-T--V--WRQANKYKVPRIAFVNKMDRM 147 (704)
T ss_pred eeEEEEeCCCccch-H-----HHHHHHHHHC--C-EEEEEEeCCCCCcHHHH-H--H--HHHHHHcCCCEEEEEeCCCcc
Confidence 45789999999762 1 1223344333 3 58889998753322221 1 1 122335689999999999997
Q ss_pred cc
Q 026576 147 TN 148 (236)
Q Consensus 147 ~~ 148 (236)
..
T Consensus 148 ~~ 149 (704)
T 2rdo_7 148 GA 149 (704)
T ss_pred cc
Confidence 53
No 164
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.35 E-value=0.0025 Score=62.69 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=33.6
Q ss_pred HHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026576 178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 220 (236)
Q Consensus 178 l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e 220 (236)
+...+.+.+....++..+..|+.++.++..|+.+|-+.++--.
T Consensus 240 ~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~ 282 (693)
T 2xex_A 240 LKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPL 282 (693)
T ss_dssp HHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGG
T ss_pred HHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCch
Confidence 4445555566666778888899999999999999999887543
No 165
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.35 E-value=0.00016 Score=72.12 Aligned_cols=120 Identities=9% Similarity=0.121 Sum_probs=68.7
Q ss_pred CCEEEEeCCCceeeeec---c---chHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026576 67 DDYLVFDCPGQIELFTH---V---PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 140 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~---~---~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl 140 (236)
.+.+|+||||-...-+. . ....+++..-.+. -.-++++++|+..-....+... -+......+.|.|.|+
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~-~aDlIL~VVDAs~~~~~~d~l~----ll~~L~~~g~pvIlVl 224 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK-ENCLILAVSPANSDLANSDALK----IAKEVDPQGQRTIGVI 224 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTS-TTEEEEEEEETTSCSSSCHHHH----HHHHHCTTCSSEEEEE
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhc-CCcEEEEEEcCCCCcchhHHHH----HHHHHHhcCCCEEEEE
Confidence 36899999993332110 1 1233333332232 3346899999976333333210 0223345689999999
Q ss_pred cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026576 141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
||+|+++.......++. ... .-...+...++|+|+.++++++.|...|.+.
T Consensus 225 NKiDlv~~~~~~~~il~-----------~~~-------------~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 225 TKLDLMDEGTDARDVLE-----------NKL-------------LPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp ECTTSSCTTCCSHHHHT-----------TCS-------------SCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred eCcccCCcchhhHHHHH-----------HHh-------------hhhhccCCceEEecccccccchhHHHHHHHH
Confidence 99999865411111000 000 0002345678899999999999999999874
No 166
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.30 E-value=0.00063 Score=58.31 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=40.6
Q ss_pred CEEEEeCCCceeeeeccchHHH-HHHHHhhCCCceEEEEee--cCCCccchhhHHHHHHHHHHHHhh--cCCCEEEEecc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRN-FVDHLKSRNFNVCAVYLL--DSQFITDVTKFISGCMASLSAMVQ--LELPHVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~-iv~~L~~~~~~~~~V~Li--D~~~~~dp~~~is~~l~sls~m~~--l~lP~InVlsK 142 (236)
.+.|+|||||.+.-.......+ +-+.+...+.. ++++++ |+..+......+ +-.+..... ...|.+.|+||
T Consensus 85 ~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~-~il~V~~~d~~~~~~~~~~~---~~~l~~~~~~~~~~~~ivv~nK 160 (262)
T 3def_A 85 TINIIDTPGLVEAGYVNHQALELIKGFLVNRTID-VLLYVDRLDVYAVDELDKQV---VIAITQTFGKEIWCKTLLVLTH 160 (262)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHHHHTTTCEEC-EEEEEEESSCSCCCHHHHHH---HHHHHHHHCGGGGGGEEEEEEC
T ss_pred eEEEEECCCCCCcccchHHHHHHHHHHHhcCCCC-EEEEEEcCCCCCCCHHHHHH---HHHHHHHhchhhhcCEEEEEeC
Confidence 5789999999885444333333 33333222333 466664 443333222122 212222221 22499999999
Q ss_pred cccccc
Q 026576 143 MDLVTN 148 (236)
Q Consensus 143 ~DLl~~ 148 (236)
+|+...
T Consensus 161 ~Dl~~~ 166 (262)
T 3def_A 161 AQFSPP 166 (262)
T ss_dssp TTCCCS
T ss_pred cccCCC
Confidence 999743
No 167
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.25 E-value=0.0019 Score=59.97 Aligned_cols=119 Identities=17% Similarity=0.287 Sum_probs=74.4
Q ss_pred CCEEEEeCCCceeeee-ccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh--hcCCCEEEEeccc
Q 026576 67 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~-~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~--~l~lP~InVlsK~ 143 (236)
..+.+.|+||++|--. .......+.+.+++ .+ ++++++|+. .+|-.-+|...--+.... -...|.|.|+||+
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~er--a~-~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKl 279 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIAR--TR-VLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 279 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTS--SS-EEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECC
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHH--HH-hhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECC
Confidence 3578999999987321 11122334444422 33 588999987 556555665544333332 2478999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026576 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
|+.... .+.. +.+.+...+ ..++++|+.++++++.|+..|-+.+.-.
T Consensus 280 Dl~~~~-~~~~---------------------------l~~~l~~~g-~~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 280 DLLEEE-AVKA---------------------------LADALAREG-LAVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp TTSCHH-HHHH---------------------------HHHHHHTTT-SCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred ChhhHH-HHHH---------------------------HHHHHHhcC-CeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 986431 1111 111112222 5789999999999999999998877543
No 168
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.24 E-value=0.00044 Score=62.70 Aligned_cols=86 Identities=17% Similarity=0.301 Sum_probs=43.4
Q ss_pred EEEEeecC-CCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026576 102 CAVYLLDS-QFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180 (236)
Q Consensus 102 ~~V~LiD~-~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~ 180 (236)
++||++++ .....+.+. .++ -.+.-++|.|.|+||+|+.... ++.. +..
T Consensus 148 ~~vy~I~~~~~~l~~~d~--~~~----~~l~~~~piIlV~NK~Dl~~~~-ev~~-----------------------~k~ 197 (361)
T 2qag_A 148 CCFYFISPFGHGLKPLDV--AFM----KAIHNKVNIVPVIAKADTLTLK-ERER-----------------------LKK 197 (361)
T ss_dssp EEEEEECSSSSSCCHHHH--HHH----HHTCS-SCEEEEEECCSSSCHH-HHHH-----------------------HHH
T ss_pred EEEEEEecCCCCcchhHH--HHH----HHhccCCCEEEEEECCCCCCHH-HHHH-----------------------HHH
Confidence 47777775 333333332 111 1224579999999999997644 2221 112
Q ss_pred HHHHHhhccCCeeEEEeeccCccc---HHHHHHHHHHhhcc
Q 026576 181 SLIELVDEYSMVSFMPLDLRKESS---IRYVLSQIDNCIQW 218 (236)
Q Consensus 181 ~l~~li~d~~lv~f~pls~~d~~~---i~~L~~~Id~~~~y 218 (236)
.+.+.+..++ +.++++|+.++++ +..+...|.+.+++
T Consensus 198 ~i~~~~~~~~-i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 198 RILDEIEEHN-IKIYHLPDAESDEDEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHTTCC--CCSCCCC---------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHCC-CCEEeCCCcCCCcchhHHHHHHHHHhcCCC
Confidence 2233444444 4777888776654 45566666666655
No 169
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.24 E-value=0.00019 Score=68.91 Aligned_cols=115 Identities=11% Similarity=0.077 Sum_probs=70.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||-.+-..+. ..++ ... ++++++|+.--..|...- .+......++|.|.|+||+|+..
T Consensus 53 ~i~~iDTPGhe~f~~~~~------~~~~--~aD-~vILVVDa~dg~~~qt~e-----~l~~~~~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 53 KITFLDTPGHAAFSAMRA------RGTQ--VTD-IVILVVAADDGVMKQTVE-----SIQHAKDAHVPIVLAINKCDKAE 118 (537)
T ss_dssp CCBCEECSSSCCTTTSBB------SSSB--SBS-SCEEECBSSSCCCHHHHH-----HHHHHHTTTCCEEECCBSGGGTT
T ss_pred EEEEEECCChHHHHHHHH------HHHc--cCC-EEEEEEECCCCccHHHHH-----HHHHHHHcCCcEEEEEecccccc
Confidence 588999999754222111 1121 223 478899987644444332 23344457899999999999964
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.. ...... .+.. . -...++++. +.++|+|+.+++++..|+..|.+..+.
T Consensus 119 ~~--~~~v~~----~l~~-~---------------~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 119 AD--PEKVKK----ELLA-Y---------------DVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp TS--CCSSSS----HHHH-T---------------TSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred cc--hHHHHH----HHHh-h---------------hhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhc
Confidence 32 111100 0000 0 011345554 799999999999999999999887654
No 170
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.21 E-value=0.00027 Score=67.02 Aligned_cols=111 Identities=13% Similarity=0.174 Sum_probs=61.9
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
-.+.++|||||-+....+. . .++. .+ ++++++|+....+...++ -.+..+ .-+.|.|.|.||+|+.
T Consensus 98 ~~~~i~Dt~G~e~~~~~~~---~---~l~~--~d-~ii~V~D~s~~~~~~~~~----~~l~~~-~~~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 98 CLFHFWDFGGQEIMHASHQ---F---FMTR--SS-VYMLLLDSRTDSNKHYWL----RHIEKY-GGKSPVIVVMNKIDEN 163 (535)
T ss_dssp CEEEEECCCSCCTTTTTCH---H---HHHS--SE-EEEEEECGGGGGGHHHHH----HHHHHH-SSSCCEEEEECCTTTC
T ss_pred EEEEEEECCcHHHHHHHHH---H---HccC--Cc-EEEEEEeCCCchhHHHHH----HHHHHh-CCCCCEEEEEECCCcc
Confidence 3589999999766443221 1 1322 33 689999986543322222 122221 1259999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
+.. ++. .+. +.+.....+ ..++++|+.++++++.|+..|-+.+.-
T Consensus 164 ~~~-~v~------~~~-------------------~~~~~~~~~-~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 164 PSY-NIE------QKK-------------------INERFPAIE-NRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp TTC-CCC------HHH-------------------HHHHCGGGT-TCEEECCC-----CTTHHHHHHHHHTC
T ss_pred ccc-ccC------HHH-------------------HHHHHHhcC-CceEEEecCcccCHHHHHHHHHHHHhc
Confidence 543 110 000 001122222 369999999999999999999887654
No 171
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.19 E-value=0.0018 Score=63.66 Aligned_cols=128 Identities=9% Similarity=0.096 Sum_probs=70.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
....|+||||+.+.-. ......+++.. .. +++|++|+..-......- ++ .....+.+.|.+.|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~---~~~~~~~~i~~--aD-~vL~Vvda~~~~s~~e~~---~l-~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEA---RNELSLGYVNN--CH-AILFVMRASQPCTLGERR---YL-ENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHT---CHHHHTHHHHS--SS-EEEEEEETTSTTCHHHHH---HH-HHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhh---HHHHHHHHHHh--CC-EEEEEEeCCCccchhHHH---HH-HHHHHhhCCCEEEEEECcccc
Confidence 3689999999776322 22333455533 33 589999986543333211 01 112234689999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--------CCeeEEEeecc--------------Cccc
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--------SMVSFMPLDLR--------------KESS 204 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--------~lv~f~pls~~--------------d~~~ 204 (236)
... .+. ..+.+.+.. .. ..+...+...+..+ ....++|+|+. ++.+
T Consensus 244 ~~~-~~~---~ee~e~l~~-~~-------~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~G 311 (695)
T 2j69_A 244 RES-LID---PDDVEELQA-SE-------NRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTG 311 (695)
T ss_dssp GGG-CSS---TTCHHHHHH-HH-------HHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSS
T ss_pred ccc-ccC---hhhHHHHHH-HH-------HHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccC
Confidence 542 010 001111100 00 01111111222222 12478999999 9999
Q ss_pred HHHHHHHHHHhh
Q 026576 205 IRYVLSQIDNCI 216 (236)
Q Consensus 205 i~~L~~~Id~~~ 216 (236)
+..|...+.+.+
T Consensus 312 i~~L~~~L~~~l 323 (695)
T 2j69_A 312 FPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887754
No 172
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.17 E-value=0.0015 Score=62.24 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=42.4
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..+.|+|||||.. |. ......+.. .. ++|+++|+..-..+.. ...+......++|.+.|+||+|+.
T Consensus 82 ~~i~liDTPG~~d-f~-----~~~~~~l~~--aD-~~IlVvDa~~g~~~~t-----~~~~~~~~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 82 CLVNLLDTPGHED-FS-----EDTYRTLTA--VD-CCLMVIDAAKGVEDRT-----RKLMEVTRLRDTPILTFMNKLDRD 147 (529)
T ss_dssp EEEEEECCCCSTT-CC-----HHHHHGGGG--CS-EEEEEEETTTCSCHHH-----HHHHHHHTTTTCCEEEEEECTTSC
T ss_pred eEEEEEECCCChh-HH-----HHHHHHHHH--CC-EEEEEEeCCccchHHH-----HHHHHHHHHcCCCEEEEEcCcCCc
Confidence 3579999999854 22 223334433 33 5899999865332221 111222334699999999999997
Q ss_pred cc
Q 026576 147 TN 148 (236)
Q Consensus 147 ~~ 148 (236)
..
T Consensus 148 ~~ 149 (529)
T 2h5e_A 148 IR 149 (529)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.14 E-value=0.0088 Score=58.43 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=41.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.+-|+|||||..+ .......++..+ .+++++|+..-.++..- -+ +....+.++|.|.|+||+|+.
T Consensus 75 ~~nliDTpG~~~f------~~~~~~~l~~ad---~~ilVvD~~~g~~~qt~---~~--~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 75 RVFLLDAPGYGDF------VGEIRGALEAAD---AALVAVSAEAGVQVGTE---RA--WTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEEECCCSGGG------HHHHHHHHHHCS---EEEEEEETTTCSCHHHH---HH--HHHHHHTTCCEEEEEECGGGC
T ss_pred EEEEEeCCCccch------HHHHHHHHhhcC---cEEEEEcCCcccchhHH---HH--HHHHHHccCCEEEEecCCchh
Confidence 4689999998652 233445554333 47888997654444322 11 222234699999999999997
No 174
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.12 E-value=0.0015 Score=60.69 Aligned_cols=140 Identities=11% Similarity=0.188 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHHHHh-hHHHHHHHhc----------ccCCCCEEEEeCCCceeeee-ccchHHHHHHHHhhCCCceEEEE
Q 026576 38 PNGGLIYCMEHLEDN-LDDWLAEELD----------NYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVY 105 (236)
Q Consensus 38 PNGalv~~me~l~~n-~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~-~~~~~~~iv~~L~~~~~~~~~V~ 105 (236)
||.|.-+-++.|... + ........ ......+.|+||||..+--. ....++......-+ +.. ++++
T Consensus 32 ~nvGKSTL~n~l~~~~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~-~ad-~il~ 108 (456)
T 4dcu_A 32 PNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD-EAD-VIIF 108 (456)
T ss_dssp SSSSHHHHHHHHEEEEE-C-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH-HCS-EEEE
T ss_pred CCCcHHHHHHHHhCCCC-cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh-hCC-EEEE
Confidence 677777777776532 1 11111111 01134689999999542100 01122222222111 233 6899
Q ss_pred eecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026576 106 LLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE 184 (236)
Q Consensus 106 LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~ 184 (236)
++|+..-..+. ..+. ..+-+.+.|.+.|.||+|+.+......++
T Consensus 109 VvD~~~~~~~~d~~l~------~~l~~~~~pvilV~NK~D~~~~~~~~~e~----------------------------- 153 (456)
T 4dcu_A 109 MVNGREGVTAADEEVA------KILYRTKKPVVLAVNKLDNTEMRANIYDF----------------------------- 153 (456)
T ss_dssp EEESSSCSCHHHHHHH------HHHTTCCSCEEEEEECC---------CCS-----------------------------
T ss_pred EEeCCCCCChHHHHHH------HHHHHcCCCEEEEEECccchhhhhhHHHH-----------------------------
Confidence 99986533333 2222 22345799999999999986432111111
Q ss_pred HhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
...++-..+|+|+..+.++.+|+..+-+.+.
T Consensus 154 --~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 154 --YSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp --GGGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred --HHcCCCceEEeecccccchHHHHHHHHhhcc
Confidence 1123335679999999999999999977654
No 175
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0016 Score=51.83 Aligned_cols=76 Identities=16% Similarity=0.297 Sum_probs=45.4
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh----cCCCEEEEe
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ----LELPHVNIL 140 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~----l~lP~InVl 140 (236)
..+.++|||||.+. +......+..... .. -++++++|+. .++..+-. .++..+..... -+.|.+.|+
T Consensus 91 ~~~~l~Dt~G~~~~---~~~~~~~~~~~~~-~~-~~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 163 (193)
T 2ged_A 91 SGVTLVDFPGHVKL---RYKLSDYLKTRAK-FV-KGLIFMVDST--VDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163 (193)
T ss_dssp TTCSEEEETTCCBS---SCCHHHHHHHHGG-GE-EEEEEEEETT--CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred CeEEEEECCCCchH---HHHHHHHHHhhcc-cC-CEEEEEEECC--CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEE
Confidence 46789999998653 2333333333211 12 3689999987 23433322 33333333322 389999999
Q ss_pred cccccccch
Q 026576 141 SKMDLVTNK 149 (236)
Q Consensus 141 sK~DLl~~~ 149 (236)
||+|+.+..
T Consensus 164 nK~Dl~~~~ 172 (193)
T 2ged_A 164 NKSELFTAR 172 (193)
T ss_dssp ECTTSTTCC
T ss_pred EchHhcCCC
Confidence 999998654
No 176
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.08 E-value=0.0017 Score=55.81 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=40.0
Q ss_pred CEEEEeCCCceeeeeccc-hHHHHHHHHhhCCCceEEEEeecC--CCccchhhHHHHHHHHHHHHh--hcCCCEEEEecc
Q 026576 68 DYLVFDCPGQIELFTHVP-VLRNFVDHLKSRNFNVCAVYLLDS--QFITDVTKFISGCMASLSAMV--QLELPHVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~-~~~~iv~~L~~~~~~~~~V~LiD~--~~~~dp~~~is~~l~sls~m~--~l~lP~InVlsK 142 (236)
.+.|+|||||.+.-.... ....+-+.+...+.. +++|++|. ..+..... .++-.+.-.. +...|.+.|+||
T Consensus 88 ~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d-~il~v~~~d~~~~~~~~~---~~~~~l~~~~~~~~~~~iivV~nK 163 (270)
T 1h65_A 88 TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTID-VLLYVDRLDAYRVDNLDK---LVAKAITDSFGKGIWNKAIVALTH 163 (270)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHHHHTTTCEEC-EEEEEEESSCCCCCHHHH---HHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred EEEEEECCCCCCCccchHHHHHHHHHHhhcCCCC-EEEEEEeCCCCcCCHHHH---HHHHHHHHHhCcccccCEEEEEEC
Confidence 589999999887432222 222222222212333 56777544 32322111 2222222221 122699999999
Q ss_pred cccccch
Q 026576 143 MDLVTNK 149 (236)
Q Consensus 143 ~DLl~~~ 149 (236)
+|+....
T Consensus 164 ~Dl~~~~ 170 (270)
T 1h65_A 164 AQFSPPD 170 (270)
T ss_dssp CSCCCGG
T ss_pred cccCCcC
Confidence 9997643
No 177
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.06 E-value=0.0033 Score=50.15 Aligned_cols=113 Identities=14% Similarity=0.184 Sum_probs=62.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhH--HHHHHHHHHHHhhcCCCEEEEecccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKF--ISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~--is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
..-+.|||||-+....+ + ..+.. .. ++++++|.. ++ +.+ +..++..+... .-+.|.+.|.||+|
T Consensus 57 ~~~i~Dt~G~~~~~~~~---~---~~~~~--~~-~~i~v~d~~---~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~D 123 (184)
T 2zej_A 57 VLNVWDFAGREEFYSTH---P---HFMTQ--RA-LYLAVYDLS---KGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLD 123 (184)
T ss_dssp EEEEEEECSHHHHHTTS---H---HHHHH--SE-EEEEEEEGG---GCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGG
T ss_pred EEEEEecCCCHHHHHhh---H---HHccC--Cc-EEEEEEeCC---cchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCC
Confidence 46789999986532211 1 12322 22 455667753 33 222 22222222111 13799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCe---eEEEeeccCcc-cHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV---SFMPLDLRKES-SIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv---~f~pls~~d~~-~i~~L~~~Id~~~ 216 (236)
+.... ...... .+ ...++.+.+++- .|+++|++++. +++.|+..|-+.+
T Consensus 124 l~~~~-~~~~~~-------------------~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 124 VSDEK-QRKACM-------------------SK---ITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp GCCHH-HHHHHH-------------------HH---HHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred cccch-hhHHHH-------------------HH---HHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 96432 111000 00 011233445543 59999999995 9999999987654
No 178
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.01 E-value=0.0037 Score=52.45 Aligned_cols=111 Identities=13% Similarity=0.187 Sum_probs=64.4
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEecccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.-|.||+||-+.... +. .+. .+.. +++++.|.. ++..|-. .++..+.....-++|.|.|-||+||.
T Consensus 64 l~iwDtaGqe~~~~l----~~--~~~--~~a~-~~ilv~di~---~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 64 LQLWDTAGLERFRSL----IP--SYI--RDSA-AAVVVYDIT---NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp EEEECCSCTTTCGGG----HH--HHH--TTCS-EEEEEEETT---CHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred EEEEECCCchhhhhH----HH--HHh--cccc-EEEEEeecc---hhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 468999999653221 11 122 2333 466666643 4444332 23333333344579999999999986
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
... .+ . . + . -. ++...++ ..|+..||+++++|++++..|-+.+..
T Consensus 132 ~~r-~V----~--~----~-----e---~~-------~~a~~~~-~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 132 DKR-QV----S--I----E-----E---GE-------RKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp GGC-CS----C--H----H-----H---HH-------HHHHHHT-CEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred hcC-cc----c--H----H-----H---Hh-------hHHHHhC-CeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 432 11 1 0 0 0 01 1222344 479999999999999999999877643
No 179
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.01 E-value=0.0037 Score=56.24 Aligned_cols=111 Identities=13% Similarity=0.061 Sum_probs=59.6
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
..+++++||||. ... . .. +. .... ++++++|+..-.+... +.. . -++.|.+.|+||+|+
T Consensus 166 ~~~~iliDT~Gi---~~~--~-~~----l~-~~~d-~vl~V~d~~~~~~~~~-i~~-----~---il~~~~ivVlNK~Dl 224 (349)
T 2www_A 166 GYDIILIETVGV---GQS--E-FA----VA-DMVD-MFVLLLPPAGGDELQG-IKR-----G---IIEMADLVAVTKSDG 224 (349)
T ss_dssp TCSEEEEECCCC-----C--H-HH----HH-TTCS-EEEEEECCC---------------------CCSCSEEEECCCSG
T ss_pred CCCEEEEECCCc---chh--h-hh----HH-hhCC-EEEEEEcCCcchhHHH-hHH-----H---HHhcCCEEEEeeecC
Confidence 457999999993 211 1 11 21 2344 4788999864221111 100 0 147899999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh--ccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~--d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.+.. .... ...++...+..+.. ......++++|+.++++++.|...|.+..+
T Consensus 225 ~~~~-~~~~-------------------~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 225 DLIV-PARR-------------------IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp GGHH-HHHH-------------------HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCch-hHHH-------------------HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 6432 1110 00111111100000 001247899999999999999999988664
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.97 E-value=0.00091 Score=60.02 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=41.3
Q ss_pred CCEEEEeCCCceeeeec---cch---HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026576 67 DDYLVFDCPGQIELFTH---VPV---LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 140 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~---~~~---~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl 140 (236)
.++.|+||||+...-.. ... +..++...-+ +.+ ++++++|+....... +..+.-+...-..+.|.|.|+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~-~~d-~iilvv~~~~~~~~~---~~~~~l~~~~~~~~~~~i~V~ 210 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIE-KPN-CIILAISPANQDLAT---SDAIKISREVDPSGDRTFGVL 210 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHH-SSS-EEEEEEEETTSCGGG---CHHHHHHHHSCTTCTTEEEEE
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhh-cCC-eEEEEeecccCCcCC---HHHHHHHHHhcccCCCEEEEE
Confidence 36899999997764221 111 1222222212 334 466667754321111 111111222334688999999
Q ss_pred cccccccch
Q 026576 141 SKMDLVTNK 149 (236)
Q Consensus 141 sK~DLl~~~ 149 (236)
||+|++...
T Consensus 211 nK~Dl~~~~ 219 (360)
T 3t34_A 211 TKIDLMDKG 219 (360)
T ss_dssp ECGGGCCTT
T ss_pred eCCccCCCc
Confidence 999998643
No 181
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.97 E-value=0.00028 Score=67.17 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..+.++|||||-.+...+. ..+ .... ++++++|+..-..|...-. +......++|.|.|+||+|+.
T Consensus 51 ~~i~~iDTPGhe~f~~~~~------~~~--~~aD-~aILVVda~~g~~~qT~e~-----l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRA------RGA--QATD-IVVLVVAADDGVMPQTIEA-----IQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp SCCCEECCCTTTCCTTSBC------SSS--BSCS-SEEEEEETTTBSCTTTHHH-----HHHHHHTTCCEEEEEECSSSS
T ss_pred EEEEEEECCCcHHHHHHHH------HHH--hhCC-EEEEEeecccCccHHHHHH-----HHHHHhcCceEEEEEEecccc
Confidence 4689999999865322211 111 1222 4788899865334443322 122234799999999999996
Q ss_pred cch-hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHH
Q 026576 147 TNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 147 ~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
... ..+...+. ... .+.+.++ -+.|+|+|+.+++++.+|+..|-.
T Consensus 117 ~~~~~~v~~~l~-----------~~~------------~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 117 EADPDRVKNELS-----------QYG------------ILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TTCCCCTTCCCC-----------CCC------------CCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred ccCHHHHHHHHH-----------Hhh------------hhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 421 01211111 000 0112344 379999999999999999998864
No 182
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.94 E-value=0.0017 Score=56.93 Aligned_cols=100 Identities=14% Similarity=0.252 Sum_probs=58.7
Q ss_pred eCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccccccchhH
Q 026576 73 DCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDLVTNKKE 151 (236)
Q Consensus 73 D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~ 151 (236)
.+||++. ...+.+.+.+++. . ++++++|+..-.... ..+..++ -+.|.+.|+||+||+... .
T Consensus 5 w~PGhm~-----ka~~~~~~~l~~a--D-vVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~-~ 67 (282)
T 1puj_A 5 WFPGHMA-----KARREVTEKLKLI--D-IVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA-V 67 (282)
T ss_dssp ----CTT-----HHHHHHHHHGGGC--S-EEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH-H
T ss_pred CCchHHH-----HHHHHHHHHHhhC--C-EEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH-H
Confidence 5788642 2335566666443 3 589999986422111 1232221 489999999999998633 2
Q ss_pred hhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 152 IEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 152 l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.+.|. +..++.+ +.++++|+.++.++..|...+.+.+.
T Consensus 68 ~~~~~---------------------------~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 68 TQQWK---------------------------EHFENQG-IRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHH---------------------------HHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHH---------------------------HHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHH
Confidence 22111 1112222 37889999999999999988877653
No 183
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.90 E-value=0.005 Score=51.33 Aligned_cols=110 Identities=13% Similarity=0.154 Sum_probs=60.4
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHH-hhcCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAM-VQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m-~~l~lP~InVlsK~DL 145 (236)
..++||+||-.. .+.+......+.. +++++.|. +++..|-..- ..-+.-. ..-+.|.|.|.||+||
T Consensus 89 l~~~Dt~g~~~~-------~~~l~~~~~~~a~-~~ilVydv---t~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL 157 (211)
T 2g3y_A 89 IILLDMWENKGE-------NEWLHDHCMQVGD-AYLIVYSI---TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 157 (211)
T ss_dssp EEEECCTTTTHH-------HHHHHHCCCCCCS-EEEEEEET---TCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred EEEeecCCCcch-------hhhHHHHHHhhCC-EEEEEEEC---CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHH
Confidence 467899997542 1222222112222 45666663 3455544321 1111111 1137999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+.. ++ . . + .. . .++ ..++ ..|+++|+++++++++++..|-+.+
T Consensus 158 ~~~r-~v----~--~----~-----e~---~----~~a---~~~~-~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 158 VRCR-EV----S--V----S-----EG---R----ACA---VVFD-CKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp GGGC-CS----C--H----H-----HH---H----HHH---HHHT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hcCc-eE----e--H----H-----HH---H----HHH---HHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6432 11 0 0 0 00 0 111 1223 5799999999999999999887755
No 184
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.65 E-value=0.0041 Score=60.53 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=77.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..+=|+||||. .+......+.|+-.+ .+|.++||.-=-.+..-- .+....+.++|.|.++||+|..
T Consensus 67 ~~iNlIDTPGH------~DF~~Ev~raL~~~D---gavlVVDa~~GV~~qT~~-----v~~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 67 TKVNIIDTPGH------MDFLAEVYRSLSVLD---GAILLISAKDGVQAQTRI-----LFHALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp CBCCCEECCCS------SSTHHHHHHHHTTCS---EEECCEESSCTTCSHHHH-----HHHHHHHHTCSCEECCEECCSS
T ss_pred EEEEEEECCCc------HHHHHHHHHHHHHhC---EEEEEEeCCCCCcHHHHH-----HHHHHHHcCCCeEEEEeccccc
Confidence 35679999994 445556667774344 488899996543333321 1344556799999999999987
Q ss_pred cch-----hHhhhhccc-------------------cHHHHHHHhhhc---chhH--------HHHHHHHHHHHhhccCC
Q 026576 147 TNK-----KEIEDYLNP-------------------ESQFLLSELNQH---MAPQ--------FAKLNKSLIELVDEYSM 191 (236)
Q Consensus 147 ~~~-----~~l~~~l~~-------------------~~~~l~~~l~~~---~~~~--------~~~l~~~l~~li~d~~l 191 (236)
..+ .++.+.+.. ....+.+.+.+. .-.+ ...+...+...+....+
T Consensus 133 ~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (638)
T 3j25_A 133 GIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSL 212 (638)
T ss_dssp SCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccc
Confidence 532 012111110 000011111000 0000 01222333333444555
Q ss_pred eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026576 192 VSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 192 v~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
+.....|+.++.++..|+..|-+.+.-
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~p~ 239 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNKFYS 239 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHSCCC
T ss_pred ccccccccccCCCchhHhhhhhccccC
Confidence 666677999999999999998776543
No 185
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.54 E-value=0.0038 Score=59.75 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=41.7
Q ss_pred CEEEEeCCCceeeeec--cch--HHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026576 68 DYLVFDCPGQIELFTH--VPV--LRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~--~~~--~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
++.|+||||+.+-... ... ...+.. .+... . ++++++|+....-..... .+ +....+.+.|.+.|+||
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~a--D-~il~VvDa~~~~~~~~~~-~~---l~~l~~~~~pvilVlNK 227 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERV--D-LIILLFDAHKLEISDEFS-EA---IGALRGHEDKIRVVLNK 227 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHC--S-EEEEEEETTSCCCCHHHH-HH---HHHTTTCGGGEEEEEEC
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhC--C-EEEEEEeCCcCCCCHHHH-HH---HHHHHhcCCCEEEEEEC
Confidence 5899999997652110 000 223322 23333 3 589999996531111111 11 22233467899999999
Q ss_pred cccccch
Q 026576 143 MDLVTNK 149 (236)
Q Consensus 143 ~DLl~~~ 149 (236)
+|++...
T Consensus 228 ~Dl~~~~ 234 (550)
T 2qpt_A 228 ADMVETQ 234 (550)
T ss_dssp GGGSCHH
T ss_pred CCccCHH
Confidence 9998654
No 186
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.53 E-value=0.047 Score=52.14 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=45.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+=|+||||.+. -.-...+.|+-.+ .+|.++||.-=-.+..-- -+....+.++|.|.++||+|...
T Consensus 101 ~iNlIDTPGHvD------F~~Ev~raL~~~D---gAvlVvda~~GV~~qT~~-----v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 101 VVNLLDTPGHQD------FSEDTYRVLTAVD---SALVVIDAAKGVEAQTRK-----LMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp EEEEECCCCGGG------CSHHHHHHHHSCS---EEEEEEETTTBSCHHHHH-----HHHHHHHTTCCEEEEEECTTSCC
T ss_pred EEEEEeCCCcHH------HHHHHHHHHHhcC---ceEEEeecCCCcccccHH-----HHHHHHHhCCceEEEEecccchh
Confidence 467999999665 2245555664344 478899997654444422 13455678999999999999865
Q ss_pred c
Q 026576 148 N 148 (236)
Q Consensus 148 ~ 148 (236)
.
T Consensus 167 a 167 (548)
T 3vqt_A 167 L 167 (548)
T ss_dssp C
T ss_pred c
Confidence 3
No 187
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.42 E-value=0.0094 Score=53.39 Aligned_cols=111 Identities=9% Similarity=0.058 Sum_probs=60.5
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
..+++|+||||..+ +.. . +. .... ++++++|+....+...+-. .-.++|.+.|+||+|+
T Consensus 147 ~~~~iliDT~Gi~~-----~~~-~----v~-~~~d-~vl~v~d~~~~~~~~~i~~---------~i~~~~~ivvlNK~Dl 205 (337)
T 2qm8_A 147 GFDVILVETVGVGQ-----SET-A----VA-DLTD-FFLVLMLPGAGDELQGIKK---------GIFELADMIAVNKADD 205 (337)
T ss_dssp TCCEEEEEECSSSS-----CHH-H----HH-TTSS-EEEEEECSCC------CCT---------THHHHCSEEEEECCST
T ss_pred CCCEEEEECCCCCc-----chh-h----HH-hhCC-EEEEEEcCCCcccHHHHHH---------HHhccccEEEEEchhc
Confidence 45899999999543 111 1 21 2344 4778888742211100000 0025688999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--C-CeeEEEeeccCcccHHHHHHHHHHhhc
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--S-MVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~-lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.... .... +...++..++ .++... + ...++++|+.++++++.|...|.+..+
T Consensus 206 ~~~~-~~s~------------------~~~~~l~~a~-~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 206 GDGE-RRAS------------------AAASEYRAAL-HILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TCCH-HHHH------------------HHHHHHHHHH-TTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cCch-hHHH------------------HHHHHHHHHH-HhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6533 1100 0011111111 111111 1 246788999999999999999988765
No 188
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.34 E-value=0.06 Score=52.85 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=42.4
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
=||||||.+. -.......|+-.+ .+|.++|+.-=-.+..-- -+....+.++|.|.|+||+|...
T Consensus 88 NlIDTPGHvD------F~~Ev~~aLr~~D---gavlvVDaveGV~~qT~~-----v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 88 NVIDTPGHVD------FTIEVERSLRVLD---GAVVVFCGTSGVEPQSET-----VWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp EEECCCSCTT------CHHHHHHHHHHCS---EEEEEEETTTCSCHHHHH-----HHHHHHHHTCCEEEEEECSSSTT
T ss_pred EEEeCCCCcc------cHHHHHHHHHHhC---eEEEEEECCCCCchhHHH-----HHHHHHHcCCCeEEEEccccccC
Confidence 3899999655 3345555564344 478889986533333221 14445668999999999999864
No 189
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.33 E-value=0.005 Score=55.99 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=63.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-----cc--hhhHHHHHHHHHHHHhh----cCCCE
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-----TD--VTKFISGCMASLSAMVQ----LELPH 136 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-----~d--p~~~is~~l~sls~m~~----l~lP~ 136 (236)
.+-|+|||||-. |. +...... .+.. +++|++|..-. .+ +..+-.+.-+ +....+ -+.|.
T Consensus 202 ~l~i~Dt~Gq~~-~r-----~~w~~~f--~~~~-~iIfv~dls~~dq~l~ed~~~n~~~es~~~-~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 202 PFKMVDVGGQRS-ER-----KRWFECF--DSVT-SILFLVSSSEFDQVLMEDRQTNRLTESLNI-FETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEEEECC-------------CTTSC--TTCC-EEEEEEETTCTTCEETTEEEEEHHHHHHHH-HHHHHTCGGGTTSEE
T ss_pred EEEEEeccchhh-hh-----hhHHHHh--CCCC-EEEEEEECccccccccccccccHHHHHHHH-HHHHhcchhhCCCCE
Confidence 478999999932 21 0111111 2343 68999998752 12 3344332211 122222 47999
Q ss_pred EEEecccccccchh---Hhhhhcccc--H-HHHHHHhhhcchhHHHHHHH-HHHHHhhc--cCCeeEEEeeccCcccHHH
Q 026576 137 VNILSKMDLVTNKK---EIEDYLNPE--S-QFLLSELNQHMAPQFAKLNK-SLIELVDE--YSMVSFMPLDLRKESSIRY 207 (236)
Q Consensus 137 InVlsK~DLl~~~~---~l~~~l~~~--~-~~l~~~l~~~~~~~~~~l~~-~l~~li~d--~~lv~f~pls~~d~~~i~~ 207 (236)
|.|+||+||...+- .+..++... . ... + ...++.. ...++-.. -.-+.++..||+++++|..
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~-~--------e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCL-R--------DVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCH-H--------HHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCH-H--------HHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 99999999974320 122222110 0 000 0 0011110 11111111 1236889999999999999
Q ss_pred HHHHHHHh
Q 026576 208 VLSQIDNC 215 (236)
Q Consensus 208 L~~~Id~~ 215 (236)
++..+-+.
T Consensus 343 vF~~v~~~ 350 (362)
T 1zcb_A 343 VFRDVKDT 350 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99877554
No 190
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.29 E-value=0.014 Score=52.83 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=59.8
Q ss_pred cchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHH
Q 026576 84 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFL 163 (236)
Q Consensus 84 ~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l 163 (236)
....+++++.+.+. .. ++++++|+. +|. +.+.-.+.-.. -+.|.+.|+||+||+....... .
T Consensus 56 ~e~f~~~l~~i~~~-~~-~il~VvD~~---d~~---~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~~~~~--------~- 117 (368)
T 3h2y_A 56 DDDFLRILNGIGKS-DA-LVVKIVDIF---DFN---GSWLPGLHRFV-GNNKVLLVGNKADLIPKSVKHD--------K- 117 (368)
T ss_dssp CHHHHHHHHHHHHS-CC-EEEEEEETT---SHH---HHCCTTHHHHS-SSSCEEEEEECGGGSCTTSCHH--------H-
T ss_pred HHHHHHHHHHHhcc-Cc-EEEEEEECC---CCc---ccHHHHHHHHh-CCCcEEEEEEChhcCCcccCHH--------H-
Confidence 34456666666432 23 689999985 332 22211122222 2899999999999986431000 0
Q ss_pred HHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHh
Q 026576 164 LSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 164 ~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+.+.+.+.....+. ..++++|+.++.++++|+..|.+.
T Consensus 118 --------------~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 118 --------------VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp --------------HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 00011122334454 478999999999999999999764
No 191
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.24 E-value=0.0063 Score=49.88 Aligned_cols=103 Identities=12% Similarity=0.151 Sum_probs=60.6
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
+.+++++||||.+..... + .. ..-..+.++|+... ..|..+.. + ++.|.+.|+||+|
T Consensus 118 ~~d~~~id~~g~i~~~~s----------~-~~-~~~~~~~v~~~~~~~~~~~~~~~--------~--~~~~~iiv~NK~D 175 (226)
T 2hf9_A 118 EIDLLFIENVGNLICPAD----------F-DL-GTHKRIVVISTTEGDDTIEKHPG--------I--MKTADLIVINKID 175 (226)
T ss_dssp GCSEEEEECCSCSSGGGG----------C-CC-SCSEEEEEEEGGGCTTTTTTCHH--------H--HTTCSEEEEECGG
T ss_pred CCCEEEEeCCCCccCcch----------h-hh-ccCcEEEEEecCcchhhHhhhhh--------H--hhcCCEEEEeccc
Confidence 348999999997543111 1 11 11235667775332 22332221 1 4789999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.+.. .. ..+. +.+.+..++ ...++++|+++++++.+++..|.+.+
T Consensus 176 l~~~~-~~------~~~~-------------------~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 176 LADAV-GA------DIKK-------------------MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp GHHHH-TC------CHHH-------------------HHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCchh-HH------HHHH-------------------HHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 86421 00 0000 011122223 36899999999999999999987754
No 192
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.22 E-value=0.012 Score=53.44 Aligned_cols=101 Identities=16% Similarity=0.194 Sum_probs=60.1
Q ss_pred cchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHH
Q 026576 84 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFL 163 (236)
Q Consensus 84 ~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l 163 (236)
....+++++..... .+ ++++++|+.-.. +.+.. .+...+ -+.|.+.|+||+||+.......
T Consensus 58 ~e~f~~~L~~~~~~-~~-lil~VvD~~d~~--~s~~~----~l~~~l-~~~piilV~NK~DLl~~~~~~~---------- 118 (369)
T 3ec1_A 58 DDDFLSMLHRIGES-KA-LVVNIVDIFDFN--GSFIP----GLPRFA-ADNPILLVGNKADLLPRSVKYP---------- 118 (369)
T ss_dssp -CHHHHHHHHHHHH-CC-EEEEEEETTCSG--GGCCS----SHHHHC-TTSCEEEEEECGGGSCTTCCHH----------
T ss_pred HHHHHHHHHHhhcc-Cc-EEEEEEECCCCC--Cchhh----HHHHHh-CCCCEEEEEEChhcCCCccCHH----------
Confidence 34456666666321 22 689999986432 11111 111112 2889999999999986431000
Q ss_pred HHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhh
Q 026576 164 LSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 164 ~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
++.+.+.+.....+. ..++++|+.++.+++.|+..|.+..
T Consensus 119 -------------~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 119 -------------KLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp -------------HHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 000111122344555 5889999999999999999998643
No 193
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.18 E-value=0.051 Score=43.64 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=57.0
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHh-hcCCCEEEEeccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMV-QLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~-~l~lP~InVlsK~DL 145 (236)
..++||+||-..+.+ ++... .+..+ +++++.|.. ++..|-.. ++.-+.... .-+.|.|.|.||+|+
T Consensus 58 l~~~Dt~~~~~~~~~---~~~~~--~~~~~---~~i~v~dv~---~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl 126 (192)
T 2cjw_A 58 IILLDMWENKGENEW---LHDHC--MQVGD---AYLIVYSIT---DRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126 (192)
T ss_dssp EEEECCCCC----CT---TGGGH--HHHCS---EEEEEEETT---CHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred EEEEEeccCcchhhh---HHHhh--cccCC---EEEEEEECC---CHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhh
Confidence 468899998764322 11111 11122 345555532 44444332 111111111 237999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .+ . . + .+ . .++ ..++ ..|+++|+++++++++++..+-+.+
T Consensus 127 ~~~r-~v----~--~----~-----~~---~----~~a---~~~~-~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 127 VRXR-EV----S--V----S-----EG---R----AXA---VVFD-XKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp GGGC-CS----C--H----H-----HH---H----HHH---HHTT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hccc-cc----c--H----H-----HH---H----HHH---HHhC-CceEEeccccCCCHHHHHHHHHHHH
Confidence 6432 11 0 0 0 00 0 111 1222 4799999999999999999887654
No 194
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.01 E-value=0.065 Score=48.29 Aligned_cols=118 Identities=20% Similarity=0.244 Sum_probs=64.5
Q ss_pred CEEEEeCCCceeeeeccchH-HHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~-~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
+.-|.|||||-.+.+ +.. +. ... .+.. ++++++|+.-- .+....+..++-.+. ...-++|.+.|.||+||
T Consensus 47 ~LqIWDTAGQErf~~--~~l~~~--~yy--r~a~-~~IlV~Ditd~~~~~~~~l~~~l~~~~-~~~~~ipillvgNK~DL 118 (331)
T 3r7w_B 47 DLAVMELPGQLNYFE--PSYDSE--RLF--KSVG-ALVYVIDSQDEYINAITNLAMIIEYAY-KVNPSINIEVLIHKVDG 118 (331)
T ss_dssp CEEEEECCSCSSSCC--CSHHHH--HHH--TTCS-EEEEECCCSSCTTHHHHHHHHHHHHHH-HHCTTCEEEEECCCCCS
T ss_pred EEEEEECCCchhccc--hhhhhh--hhc--cCCC-EEEEEEECCchHHHHHHHHHHHHHHHh-hcCCCCcEEEEEECccc
Confidence 578999999987532 111 11 123 2444 68999998642 111122222221111 11237999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCcccHHHHHHHHHH
Q 026576 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
.+..... ...+....+.++-+.+.+ -+.|+.-||+| .+|.+.+..|=+
T Consensus 119 ~~~~~R~--------------------~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~ 170 (331)
T 3r7w_B 119 LSEDFKV--------------------DAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQ 170 (331)
T ss_dssp SCSHHHH--------------------HHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHT
T ss_pred Cchhhhh--------------------hHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHH
Confidence 7643100 011222233333333431 27899999998 578877766543
No 195
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.00 E-value=0.0022 Score=58.94 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=19.8
Q ss_pred eeEEEeeccCcccHHHHHH-HHHHhhcccccCCCCC
Q 026576 192 VSFMPLDLRKESSIRYVLS-QIDNCIQWGEDADLKI 226 (236)
Q Consensus 192 v~f~pls~~d~~~i~~L~~-~Id~~~~y~ed~~~~~ 226 (236)
..++|+|+..+.++.+|+. .+-+.++.++...|.+
T Consensus 244 ~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~ 279 (397)
T 1wxq_A 244 YIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLR 279 (397)
T ss_dssp CEEEEECHHHHHHHHSCSSSCCCCSCC---------
T ss_pred CcEEEEeccchhhHHHHHhhhhhhhcCCCccccccc
Confidence 5789999999998887765 5555555555555443
No 196
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.88 E-value=0.044 Score=48.12 Aligned_cols=86 Identities=10% Similarity=0.252 Sum_probs=52.5
Q ss_pred CCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHH
Q 026576 98 NFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFA 176 (236)
Q Consensus 98 ~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~ 176 (236)
+.. ++++++|+..-. +.. .+..++..+ -..++|.|.|+||+||.+.. +... .
T Consensus 79 naD-~vliV~d~~~p~~s~~-~l~~~l~~~---~~~~~~~ilV~NK~DL~~~~-~v~~------------~--------- 131 (302)
T 2yv5_A 79 NVD-RVIIVETLKMPEFNNY-LLDNMLVVY---EYFKVEPVIVFNKIDLLNEE-EKKE------------L--------- 131 (302)
T ss_dssp SCC-EEEEEECSTTTTCCHH-HHHHHHHHH---HHTTCEEEEEECCGGGCCHH-HHHH------------H---------
T ss_pred hcC-EEEEEEECCCCCCCHH-HHHHHHHHH---HhCCCCEEEEEEcccCCCcc-ccHH------------H---------
Confidence 555 478889986422 222 344444322 23689999999999997543 1100 0
Q ss_pred HHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026576 177 KLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 177 ~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
....+.....+ ..++++|++++++++.|...+..
T Consensus 132 ---~~~~~~~~~~g-~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 132 ---ERWISIYRDAG-YDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ---HHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHTTT
T ss_pred ---HHHHHHHHHCC-CeEEEEECCCCCCHHHHHhhccC
Confidence 00011112223 47999999999999999987753
No 197
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.83 E-value=0.046 Score=43.83 Aligned_cols=111 Identities=12% Similarity=0.144 Sum_probs=60.7
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026576 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
+.++|||||-+.- ... ....+ +.. ++++++|......... +..++-.+.....-+.|.+.|+||+|+...
T Consensus 56 ~~i~Dt~g~~~~~---~~~----~~~~~-~~~-~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 56 AQIWDTAGQERYR---RIT----SAYYR-GAV-GALLVYDIAKHLTYEN-VERWLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp EEEEECSSGGGTT---CCC----HHHHT-TCS-EEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEECCCchhhh---hhh----HHHHh-cCC-EEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 4578999986521 111 11212 233 5778888653221111 111221122112247899999999999642
Q ss_pred hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
. .. ..+ . .+ .+..+.+ +.++..|+.++.++++++..|-+.+
T Consensus 126 ~-~~------~~~------------~----a~---~l~~~~~-~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 126 R-AV------PTD------------E----AR---AFAEKNN-LSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp C-CS------CHH------------H----HH---HHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred c-Cc------CHH------------H----HH---HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2 00 000 0 11 2223344 4678899999999999999887754
No 198
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=95.80 E-value=0.076 Score=45.00 Aligned_cols=87 Identities=13% Similarity=0.057 Sum_probs=52.3
Q ss_pred eEEEEeecCCCc--cchhhHHHHHHHHHHHH-hhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHH
Q 026576 101 VCAVYLLDSQFI--TDVTKFISGCMASLSAM-VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAK 177 (236)
Q Consensus 101 ~~~V~LiD~~~~--~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~ 177 (236)
-++++++|+..- ..-. .+..++..+... ..-+.|.|.|.||+||.... .+.
T Consensus 164 d~vilV~D~t~~~~~s~~-~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~-~v~------------------------ 217 (255)
T 3c5h_A 164 DGFLLGIDVSRGMNRNFD-DQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER-YIR------------------------ 217 (255)
T ss_dssp CEEEEEEECBC----CHH-HHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH-HHH------------------------
T ss_pred CEEEEEEECCCCchhhHH-HHHHHHHHHHHHhccCCCCEEEEEEcccccccH-HHH------------------------
Confidence 368889997542 1111 133333333222 23589999999999995432 110
Q ss_pred HHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026576 178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 178 l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
...++.....-..|+++|+++++++++++..|-+.+
T Consensus 218 ---~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 218 ---DAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ---HHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---HHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 001112222236899999999999999999886653
No 199
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.44 E-value=0.08 Score=46.40 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=40.5
Q ss_pred EEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026576 102 CAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180 (236)
Q Consensus 102 ~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~ 180 (236)
+++|+++... --+|... .++ -.+.-+.|.+.|+||+|+.... ++.. ..+
T Consensus 129 ~ll~ldePt~~~Ld~~~~--~~l----~~l~~~~~iilV~~K~Dl~~~~-e~~~-----------------------~~~ 178 (301)
T 2qnr_A 129 CCFYFISPFGHGLKPLDV--AFM----KAIHNKVNIVPVIAKADTLTLK-ERER-----------------------LKK 178 (301)
T ss_dssp EEEEEECSSSSSCCHHHH--HHH----HHHTTTSCEEEEECCGGGSCHH-HHHH-----------------------HHH
T ss_pred heeeeecCcccCCCHHHH--HHH----HHHHhcCCEEEEEEeCCCCCHH-HHHH-----------------------HHH
Confidence 3677776533 3566552 111 1222368999999999997543 2211 111
Q ss_pred HHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026576 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.+.+.+..++ +.|++.|+.++ ++++++..+.+.
T Consensus 179 ~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~ 211 (301)
T 2qnr_A 179 RILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRL 211 (301)
T ss_dssp HHHHHHHHTT-CCCCCCC----------CHHHHHH
T ss_pred HHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHH
Confidence 2223344555 58888999988 888877665553
No 200
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.21 E-value=0.055 Score=48.85 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.4
Q ss_pred CeeEEEeeccCcccHHHHHHHHHHh
Q 026576 191 MVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 191 lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
-+-++-.||+|.++|+.++..+-..
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~~v~~~ 325 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFMLAVDV 325 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHHHHHHH
Confidence 3788999999999999999887654
No 201
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.14 E-value=0.031 Score=56.08 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=42.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+-|+|||||.+ |+ . .....++.. . ++|+++|+..-..+... ..+ ....+.++|.|.|+||+|+..
T Consensus 99 ~i~liDTPG~~d-f~--~---~~~~~l~~a--D-~ailVvDa~~g~~~qt~-~~~----~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 99 LINLIDSPGHVD-FS--S---EVTAALRVT--D-GALVVVDTIEGVCVQTE-TVL----RQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEECCCCCCS-SC--H---HHHHHHHTC--S-EEEEEEETTTBSCHHHH-HHH----HHHHHTTCEEEEEEECHHHHH
T ss_pred eEEEEECcCchh-hH--H---HHHHHHHhC--C-EEEEEEeCCCCCCHHHH-HHH----HHHHHcCCCeEEEEECCCcch
Confidence 357999999987 32 1 233445333 3 58889998764444332 111 222356899999999999863
No 202
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.04 E-value=0.13 Score=44.88 Aligned_cols=86 Identities=15% Similarity=0.244 Sum_probs=51.5
Q ss_pred CCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHH
Q 026576 98 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAK 177 (236)
Q Consensus 98 ~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~ 177 (236)
+.. ++++++|+..-......+..++..+ -.-+.|.|.|+||+||.+.. +.+ +.
T Consensus 84 ~ad-~vilV~D~~~~~~s~~~l~~~l~~~---~~~~~piilv~NK~DL~~~~-~v~------------~~---------- 136 (301)
T 1u0l_A 84 NVD-QVILVVTVKMPETSTYIIDKFLVLA---EKNELETVMVINKMDLYDED-DLR------------KV---------- 136 (301)
T ss_dssp SCC-EEEEEECSSTTCCCHHHHHHHHHHH---HHTTCEEEEEECCGGGCCHH-HHH------------HH----------
T ss_pred cCC-EEEEEEeCCCCCCCHHHHHHHHHHH---HHCCCCEEEEEeHHHcCCch-hHH------------HH----------
Confidence 444 5788899764221112344443322 12589999999999997543 110 00
Q ss_pred HHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026576 178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 178 l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
+++++..... ..++++|+++++++++++..+..
T Consensus 137 --~~~~~~~~~~--~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 137 --RELEEIYSGL--YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp --HHHHHHHTTT--SCEEECCTTTCTTHHHHHHHHSS
T ss_pred --HHHHHHHhhh--CcEEEEECCCCcCHHHHHHHhcC
Confidence 0011111111 67999999999999999987753
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.73 E-value=0.069 Score=49.42 Aligned_cols=87 Identities=11% Similarity=0.288 Sum_probs=36.5
Q ss_pred EEEEeecCC-CccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026576 102 CAVYLLDSQ-FITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180 (236)
Q Consensus 102 ~~V~LiD~~-~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~ 180 (236)
+++|+++.. ...++.+. .++-.+ +-+.|.|.|+||+|++... ++..+..
T Consensus 141 vlL~ldePt~~~L~~~d~--~~lk~L----~~~v~iIlVinK~Dll~~~-ev~~~k~----------------------- 190 (418)
T 2qag_C 141 CCLYFIAPSGHGLKPLDI--EFMKRL----HEKVNIIPLIAKADTLTPE-ECQQFKK----------------------- 190 (418)
T ss_dssp EEEEECCC-CCSCCHHHH--HHHHHH----TTTSEEEEEEESTTSSCHH-HHHHHHH-----------------------
T ss_pred EEEEEecCcccCCCHHHH--HHHHHH----hccCcEEEEEEcccCccHH-HHHHHHH-----------------------
Confidence 356666654 34455552 111112 2389999999999998654 3322211
Q ss_pred HHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026576 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
.+.+.+..++ +.++..|+.+.+++..+...+-..++|.
T Consensus 191 ~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iPfa 228 (418)
T 2qag_C 191 QIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLPLA 228 (418)
T ss_dssp HHHHHHHHHT-CCCCCCC-----------------CCEE
T ss_pred HHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCCcc
Confidence 1112222332 4566677777888887777777776663
No 204
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=94.68 E-value=0.044 Score=49.53 Aligned_cols=131 Identities=9% Similarity=0.109 Sum_probs=66.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccc-------hhhHHHHHHHHHHHHhh----cCCCE
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-------VTKFISGCMASLSAMVQ----LELPH 136 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~d-------p~~~is~~l~sls~m~~----l~lP~ 136 (236)
.+-++||+||-..- ... .... .+.. +++|++|..-... ...+-.+. .-+....+ -+.|.
T Consensus 194 ~l~iwDt~GQe~~r---~~w---~~yf--~~a~-~iIfV~dls~~d~~l~ed~~~nr~~e~~-~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 194 HFKMFDVGGQRSER---KKW---IHCF--EGVT-AIIFCVALSDYDLVLAEDEEMNRMHESM-KLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEEEECCSGGGG---GGG---GGGC--TTCS-EEEEEEEGGGGGCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEE
T ss_pred eEEEEeCCCchhhh---HHH---HHHH--hcCC-EEEEEEECccccccccccchhhhHHHHH-HHHHHHHcCccccCCcE
Confidence 46799999996421 111 1112 2444 6899999765211 23333322 11222222 37999
Q ss_pred EEEecccccccchh---HhhhhccccHHHHHHHhhhcchhHHHHHHH-HHHHHhh--ccCCeeEEEeeccCcccHHHHHH
Q 026576 137 VNILSKMDLVTNKK---EIEDYLNPESQFLLSELNQHMAPQFAKLNK-SLIELVD--EYSMVSFMPLDLRKESSIRYVLS 210 (236)
Q Consensus 137 InVlsK~DLl~~~~---~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~-~l~~li~--d~~lv~f~pls~~d~~~i~~L~~ 210 (236)
|.|+||+||...+. .+..++..... .. ......++.. ...++-. .-.-+.++..||+++++|..++.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g----~~---~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~ 336 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAG----SN---TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFD 336 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCS----CS---CHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCC----CC---CHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHH
Confidence 99999999964320 12222211000 00 0000011111 1111111 01237899999999999999998
Q ss_pred HHHHh
Q 026576 211 QIDNC 215 (236)
Q Consensus 211 ~Id~~ 215 (236)
.+-+.
T Consensus 337 ~v~~~ 341 (353)
T 1cip_A 337 AVTDV 341 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87554
No 205
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.60 E-value=0.021 Score=49.33 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=51.4
Q ss_pred CCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHh
Q 026576 74 CPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEI 152 (236)
Q Consensus 74 ~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l 152 (236)
+||++- .+ .+.+.+.++. .. ++++++|+..-... ...+. ++ +.|.+.|+||+||+... ..
T Consensus 4 ~PGhm~-ka----~~~~~~~l~~--~D-~vl~VvDar~P~~~~~~~l~--------ll--~k~~iivlNK~DL~~~~-~~ 64 (262)
T 3cnl_A 4 YPGHIE-KA----KRQIKDLLRL--VN-TVVEVRDARAPFATSAYGVD--------FS--RKETIILLNKVDIADEK-TT 64 (262)
T ss_dssp -----C-CT----THHHHHHHTT--CS-EEEEEEETTSTTTTSCTTSC--------CT--TSEEEEEEECGGGSCHH-HH
T ss_pred CchHHH-HH----HHHHHHHHhh--CC-EEEEEeeCCCCCcCcChHHH--------hc--CCCcEEEEECccCCCHH-HH
Confidence 477653 22 2455555633 44 58999998632111 11111 11 89999999999998643 22
Q ss_pred hhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026576 153 EDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 153 ~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+.|.+ ..+..+ ..+ ++|+.++.+++.|+..+.+.
T Consensus 65 ~~~~~---------------------------~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 65 KKWVE---------------------------FFKKQG-KRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHH---------------------------HHHHTT-CCE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHHHH---------------------------HHHHcC-CeE-EEECCCCcCHHHHHHHHHHh
Confidence 22111 111122 234 88999999999888877654
No 206
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.31 E-value=0.22 Score=39.73 Aligned_cols=109 Identities=10% Similarity=0.118 Sum_probs=58.4
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026576 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 149 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~ 149 (236)
.+.|||||-..- .... ... + +.. +++++.|......... +..++-.+.....-+.|.+.|+||+||....
T Consensus 81 ~i~Dt~g~~~~~---~~~~---~~~-~-~~~-~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~ 150 (191)
T 1oix_A 81 QIWDTAGLERYR---AITS---AYY-R-GAV-GALLVYDIAKHLTYEN-VERWLKELRDHADSNIVIMLVGNKSDLRHLR 150 (191)
T ss_dssp EEEEECSCCSSS---CCCH---HHH-T-TCC-EEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEECCCCcchh---hhhH---HHh-h-cCC-EEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 468999985422 1111 122 1 222 4677788653221111 1112211111122478999999999995322
Q ss_pred hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026576 150 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 150 ~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.. .. ...++ +..+.+ +.++..|+.|+.++++++..|-+.
T Consensus 151 -~~------~~----------------~~a~~---l~~~~~-~~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 151 -AV------PT----------------DEARA---FAEKNG-LSFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp -CS------CH----------------HHHHH---HHHHTT-CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -cc------CH----------------HHHHH---HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 00 00 00111 222333 467789999999999999988654
No 207
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.47 E-value=0.26 Score=45.62 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=40.6
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHh---hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCC-C-EEEEe
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK---SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL-P-HVNIL 140 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~---~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~l-P-~InVl 140 (236)
..+|+||||||... . -..++..+. ..-..-.+++++|+..-.+ .+. ..-.++-.+ | ...|+
T Consensus 180 ~~D~vIIDT~G~~~----~--~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-----~~~~~~~~~~~i~gvVl 245 (432)
T 2v3c_C 180 KADVLIIDTAGRHK----E--EKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-----QAKAFKEAVGEIGSIIV 245 (432)
T ss_dssp SCSEEEEECCCSCS----S--HHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-----HHHHHHTTSCSCEEEEE
T ss_pred CCCEEEEcCCCCcc----c--cHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-----HHHHHhhcccCCeEEEE
Confidence 55899999999543 1 122333332 2222345788999864332 111 122334356 7 88899
Q ss_pred cccccccch
Q 026576 141 SKMDLVTNK 149 (236)
Q Consensus 141 sK~DLl~~~ 149 (236)
||+|...+.
T Consensus 246 nK~D~~~~~ 254 (432)
T 2v3c_C 246 TKLDGSAKG 254 (432)
T ss_dssp ECSSSCSTT
T ss_pred eCCCCccch
Confidence 999987543
No 208
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.48 E-value=0.16 Score=48.24 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=39.3
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEecccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~D 144 (236)
..+|+||||||.... ....+..+........- -.+++++|+..-.+....+ ..++-.+| .+.|+||+|
T Consensus 183 ~~DvvIIDTpG~~~~--~~~l~~el~~~~~~i~p-d~vllVvDa~~g~~~~~~a--------~~~~~~~~i~gvVlNK~D 251 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQ--EDSLFEEMLQVANAIQP-DNIVYVMDASIGQACEAQA--------KAFKDKVDVASVIVTKLD 251 (504)
T ss_dssp TCCEEEEEECCCCTT--CHHHHHHHHHHHHHHCC-SEEEEEEETTCCTTHHHHH--------HHHHHHHCCCCEEEECTT
T ss_pred CCcEEEEeCCCCccc--chhHHHHHHHHHhhhcC-ceEEEEEeccccccHHHHH--------HHHHhhcCceEEEEeCCc
Confidence 458999999995421 11112222111111122 3579999997644322211 11221268 489999999
Q ss_pred cccch
Q 026576 145 LVTNK 149 (236)
Q Consensus 145 Ll~~~ 149 (236)
...+.
T Consensus 252 ~~~~~ 256 (504)
T 2j37_W 252 GHAKG 256 (504)
T ss_dssp SCCCC
T ss_pred cccch
Confidence 87543
No 209
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=92.25 E-value=0.44 Score=42.97 Aligned_cols=24 Identities=4% Similarity=0.113 Sum_probs=20.3
Q ss_pred eeEEEeeccCcccHHHHHHHHHHh
Q 026576 192 VSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 192 v~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
..++..||+++++|..++..+-+.
T Consensus 319 ~~~~eTSA~d~~nV~~vF~~v~~~ 342 (354)
T 2xtz_A 319 FKIYRTTALDQKLVKKTFKLVDET 342 (354)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred eEEEEEEeecchhHHHHHHHHHHH
Confidence 567899999999999999877553
No 210
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=92.04 E-value=0.26 Score=45.35 Aligned_cols=25 Identities=12% Similarity=-0.043 Sum_probs=21.1
Q ss_pred CeeEEEeeccCcccHHHHHHHHHHh
Q 026576 191 MVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 191 lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.+.++..||+|+++|..++..+-+.
T Consensus 358 ~~~~~~TSA~d~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 358 YCYPHFTCAVDTENIRRVFNDCRDI 382 (402)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccEEEEEEeecCcCHHHHHHHHHHH
Confidence 3678899999999999999887654
No 211
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=91.94 E-value=0.34 Score=43.31 Aligned_cols=128 Identities=14% Similarity=0.198 Sum_probs=64.9
Q ss_pred CEEEEeCCCceeeeeccchHHHH-HHHHhhCCCceEEEEeecCC-------CccchhhHHHHHHHHHHHHhh----cCCC
Q 026576 68 DYLVFDCPGQIELFTHVPVLRNF-VDHLKSRNFNVCAVYLLDSQ-------FITDVTKFISGCMASLSAMVQ----LELP 135 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~i-v~~L~~~~~~~~~V~LiD~~-------~~~dp~~~is~~l~sls~m~~----l~lP 135 (236)
.+-|+||.||-. | +++ .... .+.. +++|++|.. -.++...+-.+.- -+....+ -+.|
T Consensus 168 ~l~iwDtgGQe~-~------R~~w~~yf--~~~~-~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 168 IFRMVDVGGQRS-E------RRKWIHCF--ENVT-SIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEEECCSHH-H------HTTGGGGC--SSCS-EEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCE
T ss_pred eeEEEEcCCchh-H------HHHHHHHh--CCCC-EEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCce
Confidence 356899999832 1 111 0111 2443 688899654 2334444433221 1122222 3799
Q ss_pred EEEEecccccccch---hHhhhhcccc---HHHHHHHhhhcchhHHHHHHH-HHHHHh-hccCCeeEEEeeccCcccHHH
Q 026576 136 HVNILSKMDLVTNK---KEIEDYLNPE---SQFLLSELNQHMAPQFAKLNK-SLIELV-DEYSMVSFMPLDLRKESSIRY 207 (236)
Q Consensus 136 ~InVlsK~DLl~~~---~~l~~~l~~~---~~~l~~~l~~~~~~~~~~l~~-~l~~li-~d~~lv~f~pls~~d~~~i~~ 207 (236)
.|.|+||+||...+ ..+..|.... .... + ...++.. ...++- ..-.-+.++-.||+|.++|+.
T Consensus 237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~-e--------~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~ 307 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDA-Q--------AAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF 307 (327)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCH-H--------HHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHH
T ss_pred EEEEEECchhhhhhhccchHhhhchhccCCCCCH-H--------HHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHH
Confidence 99999999997532 1233333210 0000 0 0011110 011111 111236788899999999999
Q ss_pred HHHHHHHh
Q 026576 208 VLSQIDNC 215 (236)
Q Consensus 208 L~~~Id~~ 215 (236)
++..+-+.
T Consensus 308 vF~~v~~~ 315 (327)
T 3ohm_A 308 VFAAVKDT 315 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 212
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.75 E-value=0.35 Score=42.42 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=37.2
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEeccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKM 143 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~ 143 (236)
..+|+||||||.... ...+.+..-+..+.. ... -.+++++|+..- .+.+.. .-.++-.+| ...|+||+
T Consensus 180 ~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~~~~~-d~vllVvda~~g---~~~~~~-----~~~~~~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGY-GEEAALLEEMKNIYEAIKP-DEVTLVIDASIG---QKAYDL-----ASKFNQASKIGTIIITKM 249 (297)
T ss_dssp TCSEEEEECCCSCCT-TCHHHHHHHHHHHHHHHCC-SEEEEEEEGGGG---GGHHHH-----HHHHHHTCTTEEEEEECG
T ss_pred CCCEEEEeCCCCccc-ccHHHHHHHHHHHHHHhcC-CEEEEEeeCCch---HHHHHH-----HHHHHhhCCCCEEEEeCC
Confidence 458999999996541 011111111111111 112 246778898632 222221 112233577 66789999
Q ss_pred ccccc
Q 026576 144 DLVTN 148 (236)
Q Consensus 144 DLl~~ 148 (236)
|...+
T Consensus 250 D~~~~ 254 (297)
T 1j8m_F 250 DGTAK 254 (297)
T ss_dssp GGCTT
T ss_pred CCCcc
Confidence 97543
No 213
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.07 E-value=0.28 Score=44.80 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhccc--------------CCCCEEEEeCCCceeee-eccchHHHHHHHHhhCCCceE
Q 026576 38 PNGGLIYCMEHLEDNLDDWLAEELDNY--------------LDDDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVC 102 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~~--------------~~~~Yil~D~PGQiElf-~~~~~~~~iv~~L~~~~~~~~ 102 (236)
||.|..+-++.|...- . .+.++ .+..+.++||||-++-- .-...+++++..++.. . +
T Consensus 81 PNvGKSTL~n~Lt~~~-~----~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a--d-~ 152 (376)
T 4a9a_A 81 PSVGKSTLLSKLTGTE-S----EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC--N-L 152 (376)
T ss_dssp CCHHHHHHHHHHHSBC-C----CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC--S-E
T ss_pred CCCCHHHHHHHHhCCC-C----cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc--C-c
Confidence 9999999999887421 1 22222 23468999999976642 1223466777777544 3 5
Q ss_pred EEEeecCCCccchhhHHHHHHHHHHH-Hhh-cCCCEEEEeccccc
Q 026576 103 AVYLLDSQFITDVTKFISGCMASLSA-MVQ-LELPHVNILSKMDL 145 (236)
Q Consensus 103 ~V~LiD~~~~~dp~~~is~~l~sls~-m~~-l~lP~InVlsK~DL 145 (236)
+++++|+. +|..-.-....-|.. -.+ .+.|.+.|+||+|.
T Consensus 153 il~vvD~~---~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVN---KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEETT---SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cccccccC---ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 89999975 454333222111111 112 26799999999996
No 214
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.03 E-value=0.5 Score=43.71 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=36.8
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
..+|+||||||..... .....-+..+...-....+++++|+....+ .+... -.+ --++++..| |+||+|-
T Consensus 183 ~~D~VIIDTpG~l~~~---~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~-~~f--~~~l~i~gv-VlnK~D~ 252 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVD---EAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTA-KAF--NEALPLTGV-VLTKVDG 252 (433)
T ss_dssp TCSEEEEECCCCCTTC---HHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHH-HHH--HHHSCCCCE-EEECTTS
T ss_pred CCCEEEEECCCccccc---HHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHH-HHH--hccCCCeEE-EEecCCC
Confidence 4589999999954321 112111222221113345778899874432 22211 111 112444444 8999997
Q ss_pred ccc
Q 026576 146 VTN 148 (236)
Q Consensus 146 l~~ 148 (236)
-.+
T Consensus 253 ~~~ 255 (433)
T 2xxa_A 253 DAR 255 (433)
T ss_dssp SSC
T ss_pred Ccc
Confidence 643
No 215
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.74 E-value=0.35 Score=42.82 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=44.3
Q ss_pred CCEEEEeCC----Cceeeeec-cchHHHHHHHHhhCCCceEEEEeecCC-CccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026576 67 DDYLVFDCP----GQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQ-FITDVTKFISGCMASLSAMVQLELPHVNIL 140 (236)
Q Consensus 67 ~~Yil~D~P----GQiElf~~-~~~~~~iv~~L~~~~~~~~~V~LiD~~-~~~dp~~~is~~l~sls~m~~l~lP~InVl 140 (236)
.++|.|+.. |.|+=-.- ++.+.+ .. -.+.. +++.++|+. ...++. ++.-+|.. .-..+.|.+.|+
T Consensus 54 GD~V~~~~~~~~~~~i~~i~~R~~~l~R---~~-~anvD-~v~~V~~~~~p~~~~~-~i~r~L~~---~~~~~~~~vivl 124 (307)
T 1t9h_A 54 GDYVVYQAENDKEGYLMEIKERTNELIR---PP-ICNVD-QAVLVFSAVQPSFSTA-LLDRFLVL---VEANDIQPIICI 124 (307)
T ss_dssp TCEEEEECCTTSCEEEEEECCCSCEETT---TT-EECCC-EEEEEEESTTTTCCHH-HHHHHHHH---HHTTTCEEEEEE
T ss_pred CeEEEEEEcCCCceEEEEEcchhhhhhH---HH-HHhCC-EEEEEEeCCCCCCCHH-HHHHHHHH---HHHCCCCEEEEE
Confidence 478888643 34542222 222222 11 23555 478889987 455555 66655432 224689999999
Q ss_pred cccccccch
Q 026576 141 SKMDLVTNK 149 (236)
Q Consensus 141 sK~DLl~~~ 149 (236)
||+||....
T Consensus 125 nK~DL~~~~ 133 (307)
T 1t9h_A 125 TKMDLIEDQ 133 (307)
T ss_dssp ECGGGCCCH
T ss_pred ECCccCchh
Confidence 999998754
No 216
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.35 E-value=1.7 Score=39.28 Aligned_cols=56 Identities=9% Similarity=0.262 Sum_probs=35.6
Q ss_pred hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHH
Q 026576 131 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 210 (236)
Q Consensus 131 ~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~ 210 (236)
..+.|.|.|+||+||.+.. .... .++........+ +..+++|+.++.++.+|..
T Consensus 158 ~~~~~~iivlNK~DL~~~~-~~~~------------------------~~~~~~~y~~~G-~~v~~~Sa~~~~gl~~L~~ 211 (358)
T 2rcn_A 158 TLQVEPLIVLNKIDLLDDE-GMDF------------------------VNEQMDIYRNIG-YRVLMVSSHTQDGLKPLEE 211 (358)
T ss_dssp HHTCEEEEEEECGGGCCHH-HHHH------------------------HHHHHHHHHTTT-CCEEECBTTTTBTHHHHHH
T ss_pred hcCCCEEEEEECccCCCch-hHHH------------------------HHHHHHHHHhCC-CcEEEEecCCCcCHHHHHH
Confidence 4689999999999998643 1000 001111122223 3678899999999988876
Q ss_pred HH
Q 026576 211 QI 212 (236)
Q Consensus 211 ~I 212 (236)
.+
T Consensus 212 ~~ 213 (358)
T 2rcn_A 212 AL 213 (358)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 217
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=88.78 E-value=12 Score=33.00 Aligned_cols=74 Identities=9% Similarity=0.094 Sum_probs=45.5
Q ss_pred HHHHhhcCCCEEEE-ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCc
Q 026576 126 LSAMVQLELPHVNI-LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKE 202 (236)
Q Consensus 126 ls~m~~l~lP~InV-lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~ 202 (236)
....-+.++|..-| +|++...... + .. ...++....+.+.++-+.|+. +.-+|+...+.
T Consensus 258 ~~~l~~~~i~v~gvV~N~~~~~~~~---------~--~~-------~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~e~ 319 (349)
T 3ug7_A 258 MKALQKYGIPIDAVIVNQLIPEDVQ---------C--DF-------CRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEA 319 (349)
T ss_dssp HHHHHHTTCCEEEEEEEEECCSCCC---------S--HH-------HHHHHHHHHHHHHHHHHHSTTSEEEEEECCSSCS
T ss_pred HHHHHHCCCCeeEEEEcCCccccCC---------C--ch-------HHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence 44555689998765 7888653210 0 00 111222333445555566654 78899999999
Q ss_pred ccHHHHHHHHHHhhc
Q 026576 203 SSIRYVLSQIDNCIQ 217 (236)
Q Consensus 203 ~~i~~L~~~Id~~~~ 217 (236)
.+++.|-...+...+
T Consensus 320 ~g~~~L~~~~~~l~~ 334 (349)
T 3ug7_A 320 KGIETLKQIAKILYG 334 (349)
T ss_dssp CSHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHcC
Confidence 999998877776654
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.63 E-value=2.7 Score=39.05 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=37.4
Q ss_pred CCCEEEEeCCCceeeeeccch--HHHHHHHHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcC-CCEEEEec
Q 026576 66 DDDYLVFDCPGQIELFTHVPV--LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE-LPHVNILS 141 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~--~~~iv~~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~-lP~InVls 141 (236)
..+++||||||- .|.+. +.. +..+.+ ..- -.+++++|+..-.+... .+..++=. -+...|+|
T Consensus 182 ~~DvVIIDTaGr----l~~d~~lm~e-l~~i~~~~~p-d~vlLVvDA~~gq~a~~--------~a~~f~~~~~i~gVIlT 247 (443)
T 3dm5_A 182 GVDIIIVDTAGR----HKEDKALIEE-MKQISNVIHP-HEVILVIDGTIGQQAYN--------QALAFKEATPIGSIIVT 247 (443)
T ss_dssp TCSEEEEECCCC----SSCCHHHHHH-HHHHHHHHCC-SEEEEEEEGGGGGGHHH--------HHHHHHHSCTTEEEEEE
T ss_pred CCCEEEEECCCc----ccchHHHHHH-HHHHHHhhcC-ceEEEEEeCCCchhHHH--------HHHHHHhhCCCeEEEEE
Confidence 458999999993 23222 222 122211 122 24789999876332211 11222212 34557899
Q ss_pred ccccccch
Q 026576 142 KMDLVTNK 149 (236)
Q Consensus 142 K~DLl~~~ 149 (236)
|+|...+.
T Consensus 248 KlD~~~~g 255 (443)
T 3dm5_A 248 KLDGSAKG 255 (443)
T ss_dssp CCSSCSSH
T ss_pred CCCCcccc
Confidence 99987654
No 219
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=85.95 E-value=1.6 Score=40.27 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=35.6
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
..+|+||||||....- ...+..+........ .--+++++|+... .+.+..+ -...-++++ .-.|+||+|-
T Consensus 180 ~~DvVIIDTaG~l~~d--~~l~~el~~i~~~~~-pd~vlLVvDa~tg---q~av~~a---~~f~~~l~i-~GVIlTKlD~ 249 (425)
T 2ffh_A 180 ARDLILVDTAGRLQID--EPLMGELARLKEVLG-PDEVLLVLDAMTG---QEALSVA---RAFDEKVGV-TGLVLTKLDG 249 (425)
T ss_dssp TCSEEEEECCCCSSCC--HHHHHHHHHHHHHHC-CSEEEEEEEGGGT---THHHHHH---HHHHHHTCC-CEEEEESGGG
T ss_pred CCCEEEEcCCCccccc--HHHHHHHHHhhhccC-CceEEEEEeccch---HHHHHHH---HHHHhcCCc-eEEEEeCcCC
Confidence 4589999999965431 112222211111111 2246788998643 3333211 111112333 3348899997
Q ss_pred ccc
Q 026576 146 VTN 148 (236)
Q Consensus 146 l~~ 148 (236)
-.+
T Consensus 250 ~~~ 252 (425)
T 2ffh_A 250 DAR 252 (425)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
No 220
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.83 E-value=1.8 Score=40.14 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
..+++|+||||-.-.......+..+...+.... .-.+++++|+..-.+..... ...-.---+...|+||+|.
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~-pd~vlLVlDa~~gq~a~~~a-------~~f~~~~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK-PDDVILVIDASIGQKAYDLA-------SRFHQASPIGSVIITKMDG 250 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC-CSEEEEEEEGGGGGGGHHHH-------HHHHHHCSSEEEEEECGGG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhC-CcceEEEEeCccchHHHHHH-------HHHhcccCCcEEEEecccc
Confidence 468999999993220011112222222111112 23578889997643332211 1111122457788999998
Q ss_pred ccch
Q 026576 146 VTNK 149 (236)
Q Consensus 146 l~~~ 149 (236)
..+.
T Consensus 251 ~a~~ 254 (433)
T 3kl4_A 251 TAKG 254 (433)
T ss_dssp CSCH
T ss_pred cccc
Confidence 6543
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=84.52 E-value=1.1 Score=38.52 Aligned_cols=43 Identities=12% Similarity=0.291 Sum_probs=28.7
Q ss_pred eEEEEeecCC-CccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026576 101 VCAVYLLDSQ-FITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 149 (236)
Q Consensus 101 ~~~V~LiD~~-~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~ 149 (236)
.++++++|.. .-.+|.+.- . +..+.+ ..+.|.|++|+|.++..
T Consensus 113 l~~lllldep~~gL~~lD~~--~---l~~L~~-~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 113 HCCLYFISPTGHSLRPLDLE--F---MKHLSK-VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp CEEEEEECCCSSSCCHHHHH--H---HHHHHT-TSEEEEEETTGGGSCHH
T ss_pred eeeeEEEecCCCcCCHHHHH--H---HHHHHh-cCcEEEEEeccccCCHH
Confidence 6778888854 555666621 1 222223 38999999999999765
No 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=81.21 E-value=9.2 Score=35.03 Aligned_cols=162 Identities=9% Similarity=0.042 Sum_probs=80.8
Q ss_pred CCChHH-HHHHHHHHHHhhH----HH-H-HHHh---c---ccC-CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCce
Q 026576 36 LGPNGG-LIYCMEHLEDNLD----DW-L-AEEL---D---NYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNV 101 (236)
Q Consensus 36 LGPNGa-lv~~me~l~~n~~----~w-l-~~~i---~---~~~-~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~ 101 (236)
+||||+ .-+-++.+..... +. + ...+ . ... ..+..+.|+||- .........+++.+.-.+...
T Consensus 75 vG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~---~~~~~~~~~~L~~~~L~~~~~ 151 (413)
T 1tq4_A 75 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI---GSTNFPPDTYLEKMKFYEYDF 151 (413)
T ss_dssp EECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCG---GGSSCCHHHHHHHTTGGGCSE
T ss_pred ECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcc---cchHHHHHHHHHHcCCCccCC
Confidence 799996 6777777765220 00 0 0000 0 000 125688899983 222334555655553112232
Q ss_pred EEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026576 102 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS 181 (236)
Q Consensus 102 ~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~ 181 (236)
.+. +++.......-.+ ..++.+.+.|++.|+||.|++--. +-..-++ +. ......++.++
T Consensus 152 -~~~-lS~G~~~kqrv~l------a~aL~~~~~p~~lV~tkpdlllLD-EPtsgLD--~~---------~~~~l~~~l~~ 211 (413)
T 1tq4_A 152 -FII-ISATRFKKNDIDI------AKAISMMKKEFYFVRTKVDSDITN-EADGEPQ--TF---------DKEKVLQDIRL 211 (413)
T ss_dssp -EEE-EESSCCCHHHHHH------HHHHHHTTCEEEEEECCHHHHHHH-HHTTCCT--TC---------CHHHHHHHHHH
T ss_pred -eEE-eCCCCccHHHHHH------HHHHHhcCCCeEEEEecCcccccC-cccccCC--HH---------HHHHHHHHHHH
Confidence 223 6654322222222 233455789999999999986211 0000011 00 00111112222
Q ss_pred HH-HHhhcc--CCeeEEEeecc--CcccHHHHHHHHHHhhcccc
Q 026576 182 LI-ELVDEY--SMVSFMPLDLR--KESSIRYVLSQIDNCIQWGE 220 (236)
Q Consensus 182 l~-~li~d~--~lv~f~pls~~--d~~~i~~L~~~Id~~~~y~e 220 (236)
++ +.+.+. ..-..+|+|+. ++.++++|...|-+.++.++
T Consensus 212 l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 212 NCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 21 111222 23578999994 45569999999998887664
No 223
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.33 E-value=3.2 Score=35.98 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=36.0
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEecccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~D 144 (236)
+.+|+||||||...+ ....+..+........ .-.+++++|+... .+.+... . .++-.++ .=.|+||+|
T Consensus 180 ~~D~viiDtpp~~~~--d~~~~~~l~~~~~~~~-~~~~~lv~~~~~~---~~~~~~~----~-~~~~~~~i~givlnk~d 248 (295)
T 1ls1_A 180 ARDLILVDTAGRLQI--DEPLMGELARLKEVLG-PDEVLLVLDAMTG---QEALSVA----R-AFDEKVGVTGLVLTKLD 248 (295)
T ss_dssp TCCEEEEECCCCSSC--CHHHHHHHHHHHHHHC-CSEEEEEEEGGGT---HHHHHHH----H-HHHHHTCCCEEEEECGG
T ss_pred CCCEEEEeCCCCccc--cHHHHHHHHHHhhhcC-CCEEEEEEeCCCc---HHHHHHH----H-HHhhcCCCCEEEEECCC
Confidence 458999999995543 1122333333322111 2235678887632 3333221 1 1121233 224789999
Q ss_pred cccc
Q 026576 145 LVTN 148 (236)
Q Consensus 145 Ll~~ 148 (236)
--..
T Consensus 249 ~~~~ 252 (295)
T 1ls1_A 249 GDAR 252 (295)
T ss_dssp GCSS
T ss_pred CCcc
Confidence 7543
No 224
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=79.58 E-value=20 Score=28.48 Aligned_cols=70 Identities=9% Similarity=0.194 Sum_probs=37.4
Q ss_pred CCCEEEEeCCCceee-eeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEE-EEeccc
Q 026576 66 DDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV-NILSKM 143 (236)
Q Consensus 66 ~~~Yil~D~PGQiEl-f~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~I-nVlsK~ 143 (236)
+.+|+||||||.+-. .+..-....+...+ +.. ++.++.+.. .-+...+.++..+-+-+++.+ .|+||+
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~---~~~--vi~v~~~~~-----~~~~~~~~~i~~l~~~~~~i~gvvlN~~ 177 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQE---QLP--VILVVGVKL-----GCINHAMLTAQVIQHAGLTLAGWVANDV 177 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHH---TCC--EEEEEECST-----THHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHh---CCC--EEEEecCCC-----CcHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 458999999987631 11112233344443 222 455555532 113333444444446688866 468998
Q ss_pred cc
Q 026576 144 DL 145 (236)
Q Consensus 144 DL 145 (236)
|-
T Consensus 178 ~~ 179 (224)
T 1byi_A 178 TP 179 (224)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 225
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=78.45 E-value=0.33 Score=43.80 Aligned_cols=105 Identities=11% Similarity=0.154 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHhhHHHH-HHHh--ccc-----------CCCCEEEEeCCCceeeeeccc-hHHHHHHHHh-hCCCce
Q 026576 38 PNGGLIYCMEHLEDNLDDWL-AEEL--DNY-----------LDDDYLVFDCPGQIELFTHVP-VLRNFVDHLK-SRNFNV 101 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl-~~~i--~~~-----------~~~~Yil~D~PGQiElf~~~~-~~~~iv~~L~-~~~~~~ 101 (236)
||.|...-++.|.... ..- .+.. ... -.....++||||-...-.... .....+..+. ....+
T Consensus 169 ~nvGKStliN~L~~~~-~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~- 246 (368)
T 3h2y_A 169 TNVGKSTFINRMIKEF-SDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIK- 246 (368)
T ss_dssp TTSSHHHHHHHHHHHH-TTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCC-
T ss_pred CCCChhHHHHHHHhhh-ccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccC-
Confidence 7888888887776431 000 0001 110 033579999999433210011 1222333332 23444
Q ss_pred EEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026576 102 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 149 (236)
Q Consensus 102 ~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~ 149 (236)
..+|++++....-...+.. +..+-..+.|++.|+||+|.++..
T Consensus 247 ~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 247 PMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp CEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEE
T ss_pred ceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccc
Confidence 4778888732110011000 111122578999999999999754
No 226
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=77.76 E-value=12 Score=29.24 Aligned_cols=64 Identities=8% Similarity=0.177 Sum_probs=33.0
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh-----hcCCCEEEEe
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-----QLELPHVNIL 140 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~-----~l~lP~InVl 140 (236)
..+|+||||||... ... ...+...+. ++..+...... .... .. +..+- +-+++.-.|+
T Consensus 75 ~yD~viiD~~~~~~-----~~~---~~~l~~ad~---viiv~~~~~~~--~~~~-~~---~~~l~~~~~~~~~~~~~vv~ 137 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----VIT---SAAVMVSDL---VIIPVTPSPLD--FSAA-GS---VVTVLEAQAYSRKVEARFLI 137 (206)
T ss_dssp TSSEEEEECCSSSS-----HHH---HHHHHHCSE---EEEEECSCTTT--HHHH-HH---HHHHHTTSCGGGCCEEEEEE
T ss_pred CCCEEEEECCCCCC-----HHH---HHHHHHCCE---EEEEecCCHHH--HHHH-HH---HHHHHHHHHhCCCCcEEEEE
Confidence 35899999999542 112 233433332 44455554333 1111 11 12222 2356778889
Q ss_pred cccccc
Q 026576 141 SKMDLV 146 (236)
Q Consensus 141 sK~DLl 146 (236)
||++--
T Consensus 138 N~~~~~ 143 (206)
T 4dzz_A 138 TRKIEM 143 (206)
T ss_dssp CSBCTT
T ss_pred eccCCC
Confidence 999853
No 227
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=75.55 E-value=4.3 Score=36.56 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=28.6
Q ss_pred CCEEEEeCCCceeeeec-cchHHHHHHHHhhCCCceEEEEeecCCC
Q 026576 67 DDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQF 111 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~-~~~~~~iv~~L~~~~~~~~~V~LiD~~~ 111 (236)
..+.++|||||++--.. ...++.+...++. .. ++++++|+..
T Consensus 69 ~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~--ad-~ii~VvD~~~ 111 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHKGEGLGNQFLAHIRE--VA-AIAHVLRCFP 111 (368)
T ss_dssp CEEEEEECCSCCCCCCSSSCTTHHHHHHHHT--CS-EEEEEEECCC
T ss_pred ceEEEEECCCccccccccchHHHHHHHHHHh--CC-EEEEEEECCC
Confidence 35899999999874322 2345667777744 33 5899999864
No 228
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=74.97 E-value=41 Score=29.14 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=23.3
Q ss_pred HHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhh
Q 026576 181 SLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 181 ~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+.++-+.|+- +.-+|+-..+..+++.|....+...
T Consensus 281 ~l~~i~~~~~~~~~~~vP~~~~e~~g~~~L~~l~~~l~ 318 (329)
T 2woo_A 281 YLAQIEELYEDFHVVKVPQVPAEVRGTEALKSFSEMLV 318 (329)
T ss_dssp HHHHHHHHTTTSEEEEEECCSSCCCSTTHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEecCCCCCCCCHHHHHHHHHHHh
Confidence 33344455533 5668888888888887777766654
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=73.31 E-value=0.31 Score=43.95 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhc--cc-----------CCCCEEEEeCCCceeeeecc-chHHHHHHHHh-hCCCceE
Q 026576 38 PNGGLIYCMEHLEDNLDDWLAEELD--NY-----------LDDDYLVFDCPGQIELFTHV-PVLRNFVDHLK-SRNFNVC 102 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~--~~-----------~~~~Yil~D~PGQiElf~~~-~~~~~iv~~L~-~~~~~~~ 102 (236)
||.|..+-++.|.... ..-...+. .. -.....++||||-....... ......+..+. +...+ .
T Consensus 171 ~nvGKStliN~L~~~~-~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~-~ 248 (369)
T 3ec1_A 171 TNVGKSTFINRIIEEA-TGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIH-P 248 (369)
T ss_dssp TTSSHHHHHHHHHHHH-HHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCC-C
T ss_pred CCCchHHHHHHHHhhc-cCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccC-c
Confidence 7888888888877553 21111111 11 03457999999944321101 11122333342 23344 4
Q ss_pred EEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026576 103 AVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 149 (236)
Q Consensus 103 ~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~ 149 (236)
++|++++....-...+.- +...-..+.|++.|+||+|.++..
T Consensus 249 ~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 249 RVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp EEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEE
T ss_pred eEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccc
Confidence 788888732100000000 111122478999999999998754
No 230
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=71.29 E-value=39 Score=27.79 Aligned_cols=66 Identities=11% Similarity=0.002 Sum_probs=33.4
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEE-EEecccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV-NILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~I-nVlsK~D 144 (236)
.-+||||||||.+. ........ +...+ . ++.++.....+ . ......+..+-+.++|.+ .|+||.|
T Consensus 128 ~yD~ViID~pp~~~-----~~~~~~~~-~~~aD--~-viiv~~~~~~s-~----~~~~~~~~~l~~~~~~~~gvV~N~~~ 193 (262)
T 2ph1_A 128 ELDHLLIDLPPGTG-----DAPLTVMQ-DAKPT--G-VVVVSTPQELT-A----VIVEKAINMAEETNTSVLGLVENMSY 193 (262)
T ss_dssp SCSEEEEECCSSSS-----SHHHHHHH-HHCCS--E-EEEEECSSSCC-H----HHHHHHHHHHHTTTCCEEEEEETTCC
T ss_pred CCCEEEEECcCCCc-----hHHHHHHh-hccCC--e-EEEEecCccch-H----HHHHHHHHHHHhCCCCEEEEEECCCc
Confidence 45899999999542 11111111 21222 2 33344443221 1 122222333445688988 7799987
Q ss_pred c
Q 026576 145 L 145 (236)
Q Consensus 145 L 145 (236)
-
T Consensus 194 ~ 194 (262)
T 2ph1_A 194 F 194 (262)
T ss_dssp E
T ss_pred c
Confidence 5
No 231
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=70.32 E-value=19 Score=29.72 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=15.4
Q ss_pred HHHHHhcccCCCCEEEEeCCCcee
Q 026576 56 WLAEELDNYLDDDYLVFDCPGQIE 79 (236)
Q Consensus 56 wl~~~i~~~~~~~Yil~D~PGQiE 79 (236)
++.+.++. ..-+|||||||+...
T Consensus 102 ~l~~~l~~-~~yD~iiiD~pp~~~ 124 (257)
T 1wcv_1 102 ALREALRD-EGYDLVLLDAPPSLS 124 (257)
T ss_dssp HHHHHCCC-TTCSEEEEECCSSCC
T ss_pred HHHHHhcc-cCCCEEEEeCCCCCC
Confidence 34444444 356899999999654
No 232
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=68.79 E-value=4.9 Score=37.15 Aligned_cols=43 Identities=12% Similarity=0.259 Sum_probs=28.2
Q ss_pred eEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026576 101 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 149 (236)
Q Consensus 101 ~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~ 149 (236)
+|+.|++|+..-..+.+. .+.-.+..+.|+|.|++|+|.++..
T Consensus 150 ~~v~fI~d~~~~l~~~Di------eilk~L~~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLDL------VTMKKLDSKVNIIPIIAKADAISKS 192 (427)
T ss_dssp EEEEEECCCC---CHHHH------HHHHHTCSCSEEEEEESCGGGSCHH
T ss_pred EEEEEEeCCCCCCCHHHH------HHHHHHhhCCCEEEEEcchhccchH
Confidence 468888898765555552 1222233689999999999999765
No 233
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=63.93 E-value=2.6 Score=34.18 Aligned_cols=14 Identities=29% Similarity=0.933 Sum_probs=11.1
Q ss_pred CCCEEEEeCCCcee
Q 026576 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
.-+|+|||||+...
T Consensus 111 ~yD~viiD~~~~~~ 124 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ 124 (237)
T ss_dssp GCSEEEEECCSSSS
T ss_pred cCCEEEEECCCCcC
Confidence 45899999999654
No 234
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=63.73 E-value=4 Score=33.73 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=10.6
Q ss_pred CCCEEEEeCCCce
Q 026576 66 DDDYLVFDCPGQI 78 (236)
Q Consensus 66 ~~~Yil~D~PGQi 78 (236)
.-+|+|||||+..
T Consensus 110 ~yD~viiD~~~~~ 122 (263)
T 1hyq_A 110 STDILLLDAPAGL 122 (263)
T ss_dssp TCSEEEEECCSSS
T ss_pred hCCEEEEeCCCCC
Confidence 4589999999854
No 235
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=63.54 E-value=20 Score=31.24 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=35.2
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhh------CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEE
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKS------RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 139 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~------~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InV 139 (236)
+.+++|+||||... ....+...+..+.+ ....-.+++++|+. ...+-+... -...-..++. -.|
T Consensus 186 ~~dvvIiDtpg~~~---~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~~~~l~~a---~~~~~~~~i~-gvV 255 (306)
T 1vma_A 186 NKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TGQNGLVQA---KIFKEAVNVT-GII 255 (306)
T ss_dssp TCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GHHHHHHHH---HHHHHHSCCC-EEE
T ss_pred CCCEEEEECCCchh---hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CCHHHHHHH---HHHHhcCCCC-EEE
Confidence 55799999999421 12222222222221 11233467788886 222323221 1111123333 346
Q ss_pred ecccccccch
Q 026576 140 LSKMDLVTNK 149 (236)
Q Consensus 140 lsK~DLl~~~ 149 (236)
+||.|-....
T Consensus 256 lTk~D~~~~g 265 (306)
T 1vma_A 256 LTKLDGTAKG 265 (306)
T ss_dssp EECGGGCSCT
T ss_pred EeCCCCccch
Confidence 8999975443
No 236
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=63.47 E-value=21 Score=34.07 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=36.7
Q ss_pred CCEEEEeCCCceeeeec------cchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026576 67 DDYLVFDCPGQIELFTH------VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 140 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~------~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl 140 (236)
.+.+|+|.||-...-+. ...+..++..+.+. -+.+++.++.+.. +...-.+ +--+.-.-..+.++|-|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~--d~a~~~~--l~la~~v~~~g~rtI~Vl 221 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNV--DIATTEA--LSMAQEVDPEGDRTIGIL 221 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSS--CTTTCHH--HHHHHHHCSSCCSEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccc--hhccHHH--HHHHHHHhhcCCceEEEe
Confidence 56999999993322121 12233444443222 2234444454321 1111111 111122223578999999
Q ss_pred cccccccc
Q 026576 141 SKMDLVTN 148 (236)
Q Consensus 141 sK~DLl~~ 148 (236)
||.|++..
T Consensus 222 TK~Dlv~~ 229 (608)
T 3szr_A 222 TKPDLVDK 229 (608)
T ss_dssp ECGGGSSS
T ss_pred cchhhcCc
Confidence 99999953
No 237
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=63.47 E-value=3.3 Score=37.45 Aligned_cols=41 Identities=7% Similarity=0.052 Sum_probs=26.2
Q ss_pred CCEEEEeCCCceeeeecc--chHHHHHHHHhhCCCceEEEEeecCCC
Q 026576 67 DDYLVFDCPGQIELFTHV--PVLRNFVDHLKSRNFNVCAVYLLDSQF 111 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~--~~~~~iv~~L~~~~~~~~~V~LiD~~~ 111 (236)
....++|||||++ +.+. ..++.++..++. .. ++++++|+..
T Consensus 66 ~~i~lvDtpGl~~-~a~~~~gl~~~fl~~ir~--ad-~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVA-GASKGEGLGNKFLANIRE--TD-AIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCT-THHHHGGGTCCHHHHHHT--CS-EEEEEEECSC
T ss_pred eEEEEEECCCCcc-cccccchHHHHHHHHHHh--cC-eEEEEEecCC
Confidence 4689999999986 3221 223345555643 33 5899999865
No 238
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=63.45 E-value=3.8 Score=35.66 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=36.9
Q ss_pred CCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 026576 12 NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNL 53 (236)
Q Consensus 12 ~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~ 53 (236)
.+.|++.++=.|-.-..-+++.+| ||+|-+-.+|.||.+.+
T Consensus 7 ~L~y~v~v~~pdp~~A~~L~e~~G-G~~GElsAamqYl~Q~~ 47 (266)
T 1o9i_A 7 KLQYNAKPDRSDPIMARRLQESLG-GQWGETTGMMSFLSQGW 47 (266)
T ss_dssp SCSSCCCCSSCCHHHHHHHHHHHH-STTSHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHhC-CCccHHHHHHHHHHHHh
Confidence 577888888888888889999999 99999999999998865
No 239
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=63.36 E-value=16 Score=30.61 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=33.3
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC--ccchhhHHHHHHHHHHHHhhcCCCEE-EEecc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF--ITDVTKFISGCMASLSAMVQLELPHV-NILSK 142 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~--~~dp~~~is~~l~sls~m~~l~lP~I-nVlsK 142 (236)
.-+|+|||||+.....+ ...|...+. ++..+.+.. +..-..++. .+-.+.-..+.+++.+ .|+||
T Consensus 154 ~yD~IiiD~pp~~~~~~--------~~~l~~aD~---viiv~~~~~~s~~~~~~~~~-~l~~~~~~~~~~~~~~gvv~n~ 221 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVYT--------NNAIVASDY---VMIPLQAEEESTNNIQNYIS-YLIDLQEQFNPGLDMIGFVPYL 221 (298)
T ss_dssp GCSEEEEEECSSCSHHH--------HHHHHHCSE---EEEEECGGGCCHHHHHHHHH-HHHHHHHHHCTTCEEEEEEEEE
T ss_pred CCCEEEEECCCCccHHH--------HHHHHHCCe---EEEEecCcHHHHHHHHHHHH-HHHHHHHHhCCCCeEEEEEEEE
Confidence 34899999999654321 223333332 333344322 222222221 1111112233577866 56899
Q ss_pred cccc
Q 026576 143 MDLV 146 (236)
Q Consensus 143 ~DLl 146 (236)
+|--
T Consensus 222 ~~~~ 225 (298)
T 2oze_A 222 VDTD 225 (298)
T ss_dssp SCTT
T ss_pred ECCC
Confidence 9864
No 240
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=63.13 E-value=12 Score=32.19 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhh
Q 026576 38 PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK 117 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~ 117 (236)
||.+-+..-+.+.+-+ +++.+ .-+|||||||+-.. ..+. . .+.+ ... .+++++.+....-
T Consensus 180 ~~~~ell~~~~l~~ll-~~l~~------~yD~VIIDtpp~~~---~~da--~---~l~~-~aD-~vllVv~~~~~~~--- 239 (286)
T 3la6_A 180 PNPSELLMSERFAELV-NWASK------NYDLVLIDTPPILA---VTDA--A---IVGR-HVG-TTLMVARYAVNTL--- 239 (286)
T ss_dssp SCHHHHHTSHHHHHHH-HHHHH------HCSEEEEECCCTTT---CTHH--H---HHTT-TCS-EEEEEEETTTSBH---
T ss_pred CCHHHHhchHHHHHHH-HHHHh------CCCEEEEcCCCCcc---hHHH--H---HHHH-HCC-eEEEEEeCCCCcH---
Confidence 4655444444444444 33332 23799999999532 1111 1 1222 122 3566666554322
Q ss_pred HHHHHHHHHHHHhhcCCCEE-EEeccccccc
Q 026576 118 FISGCMASLSAMVQLELPHV-NILSKMDLVT 147 (236)
Q Consensus 118 ~is~~l~sls~m~~l~lP~I-nVlsK~DLl~ 147 (236)
..+..++..+-+.+.+.+ .|+||++.-+
T Consensus 240 --~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 240 --KEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp --HHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred --HHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 122223444555677766 4589998643
No 241
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=60.46 E-value=19 Score=29.70 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=11.0
Q ss_pred CCCEEEEeCCCcee
Q 026576 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
.-+|+|||||+...
T Consensus 144 ~yD~viiD~pp~~~ 157 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD 157 (267)
T ss_dssp TCSEEEEEECSSCS
T ss_pred CCCEEEEECcCCcc
Confidence 34899999999553
No 242
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=59.61 E-value=1.1 Score=36.99 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=11.0
Q ss_pred CCCEEEEeCCCcee
Q 026576 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
.-+|||||||+...
T Consensus 113 ~yD~viiD~p~~~~ 126 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE 126 (260)
T ss_dssp TCSEEEEECCSSSS
T ss_pred CCCEEEEcCCCCCC
Confidence 34899999999553
No 243
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A
Probab=55.87 E-value=4 Score=36.18 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=36.1
Q ss_pred CCCCC-CccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 026576 12 NFDYP-VAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNL 53 (236)
Q Consensus 12 ~~~Y~-~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~ 53 (236)
.++|+ +.++=.|-.-..-+++.+| ||+|-+-.+|.||.+.+
T Consensus 7 ~Lqyp~V~v~~pdP~~A~~L~eq~G-G~~GElsAamqYl~Qs~ 48 (302)
T 2v8t_A 7 RLQIELPMPKEQDPNAAAAVQALLG-GRFGEMSTLMNYMYQSF 48 (302)
T ss_dssp EESSCCCCCSSCCHHHHHHHTHHHH-STTSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHhC-CCccHHHHHHHHHHHHc
Confidence 46788 8888888888888999999 99999999999998765
No 244
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=55.39 E-value=5 Score=32.56 Aligned_cols=13 Identities=31% Similarity=0.467 Sum_probs=10.6
Q ss_pred CCCEEEEeCCCce
Q 026576 66 DDDYLVFDCPGQI 78 (236)
Q Consensus 66 ~~~Yil~D~PGQi 78 (236)
.-+|+|||||+..
T Consensus 118 ~yD~viiD~p~~~ 130 (245)
T 3ea0_A 118 FYDYIIVDFGASI 130 (245)
T ss_dssp HCSEEEEEEESSC
T ss_pred hCCEEEEeCCCCC
Confidence 3489999999955
No 245
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A
Probab=52.68 E-value=24 Score=29.29 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=15.8
Q ss_pred cCCCChHHHHHHHHHHHHhhHHHHHH
Q 026576 34 LGLGPNGGLIYCMEHLEDNLDDWLAE 59 (236)
Q Consensus 34 ~~LGPNGalv~~me~l~~n~~~wl~~ 59 (236)
++-|||..-...++.|.+.-..|...
T Consensus 6 ~~~~~~~~~~~~l~~Ll~gN~rf~~~ 31 (215)
T 1ym3_A 6 HHHGPNTNPVAAWKALKEGNERFVAG 31 (215)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 45799999999998888655488764
No 246
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=52.47 E-value=11 Score=34.35 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=20.5
Q ss_pred CCEEEEeCCCceeeeeccc--hHHHHHHHHhhCCCceEEEEeecCC
Q 026576 67 DDYLVFDCPGQIELFTHVP--VLRNFVDHLKSRNFNVCAVYLLDSQ 110 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~--~~~~iv~~L~~~~~~~~~V~LiD~~ 110 (236)
....++|||||.+ +.+.. .++.+...++. .. ++++++|+.
T Consensus 86 ~~i~lvDtpGl~~-~as~~~glg~~~l~~ir~--aD-~Il~VvD~~ 127 (396)
T 2ohf_A 86 AFLNVVDIAGLVK-GAHNGQGLGNAFLSHISA--CD-GIFHLTRAF 127 (396)
T ss_dssp CEEEEEECCC------------CCHHHHHHHT--SS-SEEEEEEC-
T ss_pred cccEEEECCCccc-ccchhhHHHHHHHHHHHh--cC-eEEEEEecC
Confidence 3589999999987 33321 12245555643 33 478999985
No 247
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=44.04 E-value=19 Score=30.48 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=33.7
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEE-EEeccccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV-NILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~I-nVlsK~DL 145 (236)
-+|||||||+-... .....+... .+ .+++++.+.... ... +..++..+-+.+.+.+ .|+||+|.
T Consensus 192 yD~VIIDtpp~~~~----~d~~~l~~~---aD---~vilVv~~~~~~-~~~----~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 192 YNFVIIDTPPVNTV----TDAQLFSKF---TG---NVVYVVNSENNN-KDE----VKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp CSEEEEECCCTTTC----SHHHHHHHH---HC---EEEEEEETTSCC-HHH----HHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred CCEEEEeCCCCchH----HHHHHHHHH---CC---EEEEEEeCCCCc-HHH----HHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 48999999995431 112222221 23 245556654322 111 1222333445678877 67899986
Q ss_pred c
Q 026576 146 V 146 (236)
Q Consensus 146 l 146 (236)
-
T Consensus 257 ~ 257 (271)
T 3bfv_A 257 D 257 (271)
T ss_dssp -
T ss_pred C
Confidence 3
No 248
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=43.55 E-value=1.4e+02 Score=27.85 Aligned_cols=22 Identities=5% Similarity=-0.028 Sum_probs=16.4
Q ss_pred eeEEEeeccCcccHHHHHHHHH
Q 026576 192 VSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 192 v~f~pls~~d~~~i~~L~~~Id 213 (236)
+..+|+-..+..+++.+-....
T Consensus 272 i~~vPl~~~e~~g~~~l~~~~~ 293 (589)
T 1ihu_A 272 TDTLFLQPVNMVGVSALSRLLS 293 (589)
T ss_dssp EEEEECCSSCCCSHHHHHHTTC
T ss_pred EEEecCCCCCCCCHHHHHHHHh
Confidence 4667888888888888776654
No 249
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=43.11 E-value=20 Score=30.84 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=31.7
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEE-EEecccc
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV-NILSKMD 144 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~I-nVlsK~D 144 (236)
-+|||||||+-.. ..+. .+ +.+ .+ .+++++.+.... .... ..++..+-+.+++.+ .|+||+|
T Consensus 214 yD~VIIDtpp~~~---~~d~--~~---l~~~ad---~vilV~~~~~~~-~~~~----~~~~~~l~~~~~~~~GvVlN~~~ 277 (299)
T 3cio_A 214 YDLVIVDTPPMLA---VSDA--AV---VGRSVG---TSLLVARFGLNT-AKEV----SLSMQRLEQAGVNIKGAILNGVI 277 (299)
T ss_dssp CSEEEEECCCTTT---CTHH--HH---HGGGCS---EEEEEEETTTSC-TTHH----HHHHHHHHHTTCCCCCEEEEECC
T ss_pred CCEEEEcCCCCch---hHHH--HH---HHHHCC---EEEEEEcCCCCh-HHHH----HHHHHHHHhCCCCeEEEEEeCCc
Confidence 4799999999542 1111 11 222 22 244445443321 1111 112333344577766 5689998
Q ss_pred cc
Q 026576 145 LV 146 (236)
Q Consensus 145 Ll 146 (236)
.-
T Consensus 278 ~~ 279 (299)
T 3cio_A 278 KR 279 (299)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 250
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=42.33 E-value=18 Score=32.15 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=11.2
Q ss_pred CCCEEEEeCCCcee
Q 026576 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
+-+|||||||+.+.
T Consensus 247 ~yD~VIID~pP~~~ 260 (403)
T 3ez9_A 247 DYDFIFIDTGPHLD 260 (403)
T ss_dssp GCSEEEEEECSSCS
T ss_pred cCCEEEEECCCCcc
Confidence 34899999999663
No 251
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=39.78 E-value=16 Score=29.29 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=32.2
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEecccc
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~D 144 (236)
+-+|+|||||+.....+ ...+...+ .++..+..... .+ ...-......-+++.+ ...|+||++
T Consensus 131 ~yD~viiD~pp~~~~~~--------~~~l~~aD---~viiv~~~~~~----s~-~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEHLT--------RGTAKAVD---MMIAVIEPNLN----SI-KTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTTCC--------HHHHTTCS---EEEEEECSSHH----HH-HHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccHHH--------HHHHHHCC---EEEEecCCCHH----HH-HHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 45899999999664322 12343233 24444544321 11 1111222334456665 456789988
No 252
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=37.51 E-value=1.9e+02 Score=24.60 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=45.1
Q ss_pred HHHHHhhcCCCEEEE-ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccC
Q 026576 125 SLSAMVQLELPHVNI-LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRK 201 (236)
Q Consensus 125 sls~m~~l~lP~InV-lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d 201 (236)
+...+-+.++|..-| +|++.-.... ..++ ..++....+.+.++-+.|+. +.-+|+...+
T Consensus 242 ~~~~l~~~gi~v~gvV~N~~~~~~~~---~~~~---------------~~~~~~~~~~l~~i~~~~~~~~~~~iPl~~~e 303 (324)
T 3zq6_A 242 AMKALEKYSIHADGVIVNQVLPEESD---CEFC---------------NARRKLQQERLKQIREKFSDKVVAEVPLLKKE 303 (324)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCSCCC---SHHH---------------HHHHHHHHHHHHHHHHHTTTSEEEEEECCSSC
T ss_pred HHHHHHHCCCCccEEEEcCCccccCC---ChHH---------------HHHHHHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 344555689998665 7887643110 0010 11222223444455566653 6788999999
Q ss_pred cccHHHHHHHHHHhhc
Q 026576 202 ESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 202 ~~~i~~L~~~Id~~~~ 217 (236)
..+++.|-...+...+
T Consensus 304 ~~g~~~L~~~~~~l~~ 319 (324)
T 3zq6_A 304 AKGIETLEKIAEQLYG 319 (324)
T ss_dssp SCSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999887776543
No 253
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=36.40 E-value=21 Score=31.15 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=10.7
Q ss_pred CCCEEEEeCCCce
Q 026576 66 DDDYLVFDCPGQI 78 (236)
Q Consensus 66 ~~~Yil~D~PGQi 78 (236)
..+||||||||..
T Consensus 191 ~yD~VIIDTpg~l 203 (320)
T 1zu4_A 191 NYDLLLIDTAGRL 203 (320)
T ss_dssp TCSEEEEECCCCG
T ss_pred CCCEEEEcCCCcc
Confidence 4589999999943
No 254
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=34.80 E-value=1.8e+02 Score=23.62 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=42.4
Q ss_pred CCCEEEEeCCCceee-eeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEE-eccc
Q 026576 66 DDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI-LSKM 143 (236)
Q Consensus 66 ~~~Yil~D~PGQiEl-f~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InV-lsK~ 143 (236)
+.+|+|||+||-+-. .....+.-.+.+.+ +.. ++.++++..-+ ++..+.+...+.+.+++..-| +||+
T Consensus 110 ~~D~vlIEgaggl~~p~~~~~~~adla~~l---~~p--viLV~~~~~~~-----i~~~~~~~~~l~~~~~~i~GvIlN~~ 179 (228)
T 3of5_A 110 DLDILFIEGAGGLLTPYSDHTTQLDLIKAL---QIP--VLLVSAIKVGC-----INHTLLTINELNRHNIKLAGWIANCN 179 (228)
T ss_dssp SCSEEEEEEEEETTCBSSSSCBHHHHHHHH---TCC--EEEEEECSTTH-----HHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred cCCEEEEECCCccccccccchhHHHHHHHc---CCC--EEEEEcCCcch-----HHHHHHHHHHHHhCCCcEEEEEEECc
Confidence 568999999985321 11222344555555 333 45567776432 555666666667788987654 7987
Q ss_pred c
Q 026576 144 D 144 (236)
Q Consensus 144 D 144 (236)
+
T Consensus 180 ~ 180 (228)
T 3of5_A 180 D 180 (228)
T ss_dssp C
T ss_pred C
Confidence 6
No 255
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=34.28 E-value=1.1e+02 Score=28.74 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=36.6
Q ss_pred CCCEEEEeCCCceeeee-ccchHHHHHHHHhhC--CCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026576 66 DDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSR--NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~-~~~~~~~iv~~L~~~--~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
..+++|+||+|...--. ....+.+++...++. +...-+++++|+..-.+.-..+ -...-.+++.. .|+||
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~a------k~f~~~~~itg-vIlTK 447 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA------KLFHEAVGLTG-ITLTK 447 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHH------HHHHHHTCCSE-EEEEC
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHH------HHHHhhcCCCE-EEEEc
Confidence 45799999999532110 011122233332211 2233467778876433322211 11122355554 58999
Q ss_pred cccccc
Q 026576 143 MDLVTN 148 (236)
Q Consensus 143 ~DLl~~ 148 (236)
.|-..+
T Consensus 448 LD~tak 453 (503)
T 2yhs_A 448 LDGTAK 453 (503)
T ss_dssp GGGCSC
T ss_pred CCCccc
Confidence 996433
No 256
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=33.29 E-value=20 Score=29.50 Aligned_cols=19 Identities=37% Similarity=0.793 Sum_probs=12.9
Q ss_pred HhcccC-CCCEEEEeCCCce
Q 026576 60 ELDNYL-DDDYLVFDCPGQI 78 (236)
Q Consensus 60 ~i~~~~-~~~Yil~D~PGQi 78 (236)
.+.... +-+||||||||..
T Consensus 108 ~l~~l~~~yD~iiiD~~~~~ 127 (269)
T 1cp2_A 108 QLGAYTDDLDYVFYDVLGDV 127 (269)
T ss_dssp HTTCCCTTCSEEEEEEECSS
T ss_pred HHHhhccCCCEEEEeCCchh
Confidence 454432 3489999999953
No 257
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=32.53 E-value=58 Score=27.90 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=22.0
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC
Q 026576 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 111 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~ 111 (236)
+.+++|+||||-.- .....+..+.+.+ .....--+++++|+..
T Consensus 182 ~~dlvIiDT~G~~~--~~~~~~~el~~~l-~~~~~~~~~lVl~at~ 224 (296)
T 2px0_A 182 EYDHVFVDTAGRNF--KDPQYIDELKETI-PFESSIQSFLVLSATA 224 (296)
T ss_dssp GSSEEEEECCCCCT--TSHHHHHHHHHHS-CCCTTEEEEEEEETTB
T ss_pred CCCEEEEeCCCCCh--hhHHHHHHHHHHH-hhcCCCeEEEEEECCC
Confidence 45899999999321 1111233333322 2112334577788763
No 258
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=32.20 E-value=58 Score=27.66 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=38.8
Q ss_pred chHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026576 85 PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 85 ~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
..++-+++.+++...+. -+.++|++-+..|..+=-++=+.+. +++|.|=|-.|.
T Consensus 92 RE~P~ll~al~~L~~~P-dlllvDG~GiaHPRr~GlAsHlGv~----l~~PtIGVAKs~ 145 (237)
T 3goc_A 92 REIPTVLAALDALPCPP-GLIVCDGYGVAHPRRFGLASHLGVL----TGLPTIGVAKNP 145 (237)
T ss_dssp GTHHHHHHHHHTSSSCC-SEEEEESCSSCSTTSCCHHHHHHHH----HCSCEEEEESSC
T ss_pred hhHHHHHHHHHhcCCCC-CEEEEeCceeecCCCcchhheeeee----cCCCEEeeeccc
Confidence 34567788887654443 5778999999999988755544444 689999997543
No 259
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=31.03 E-value=22 Score=29.79 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=10.5
Q ss_pred CCCEEEEeCCCce
Q 026576 66 DDDYLVFDCPGQI 78 (236)
Q Consensus 66 ~~~Yil~D~PGQi 78 (236)
.-+||||||||..
T Consensus 118 ~yD~ViID~~~~~ 130 (289)
T 2afh_E 118 DLDFVFYDVLGDV 130 (289)
T ss_dssp TCSEEEEEEECSS
T ss_pred CCCEEEEeCCCcc
Confidence 3489999999953
No 260
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=30.98 E-value=48 Score=27.94 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=36.8
Q ss_pred hHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026576 86 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 86 ~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
.++-+++.+++...+. -+.++|++-+.+|..|=-++=+... +++|.|-|-.+
T Consensus 89 E~P~~l~al~~L~~~P-dlllvDG~Gi~HpR~~GlA~HlGv~----l~~PtIGVAK~ 140 (225)
T 2w36_A 89 EGPLFLKAWEKLRTKP-DVVVFDGQGLAHPRKLGIASHMGLF----IEIPTIGVAKS 140 (225)
T ss_dssp HHHHHHHHHTTCCSCC-SEEEEESCSSSSTTSCCHHHHHHHH----HTSCEEEEESS
T ss_pred hhHHHHHHHHhcCCCC-CEEEEeCeEEEcCCCCCchhhhhhh----hCCCEEEEEec
Confidence 4566788887655443 6778999999999887644433333 68999998644
No 261
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=30.36 E-value=34 Score=28.72 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=10.3
Q ss_pred CCEEEEeCCCce
Q 026576 67 DDYLVFDCPGQI 78 (236)
Q Consensus 67 ~~Yil~D~PGQi 78 (236)
-+|+||||||.+
T Consensus 104 yD~viiD~p~~~ 115 (286)
T 2xj4_A 104 CDFILIDTPGGD 115 (286)
T ss_dssp CSEEEEECCSSC
T ss_pred CCEEEEcCCCCc
Confidence 489999999965
No 262
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=29.72 E-value=3.4e+02 Score=25.08 Aligned_cols=31 Identities=10% Similarity=0.143 Sum_probs=23.3
Q ss_pred HHHHhhccCC-eeEEEeeccCcccHHHHHHHH
Q 026576 182 LIELVDEYSM-VSFMPLDLRKESSIRYVLSQI 212 (236)
Q Consensus 182 l~~li~d~~l-v~f~pls~~d~~~i~~L~~~I 212 (236)
+.++-+.|+. +..+|.-.....|++.|-...
T Consensus 551 l~~l~~~~~~~v~~iP~~~~e~~g~~~l~~~~ 582 (589)
T 1ihu_A 551 IESVKRQHASRVALVPVLASEPTGIDKLKQLA 582 (589)
T ss_dssp HHHHHTTTCSSEEEEECCSSCCCSHHHHHHHH
T ss_pred HHHHHHhcCCcEEEccCCCCCCCCHHHHHHHh
Confidence 3445556665 788999999999999987654
No 263
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=29.33 E-value=40 Score=29.78 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=11.2
Q ss_pred CCCEEEEeCCCcee
Q 026576 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
+-+|||||||..+.
T Consensus 244 ~yD~ViiD~pp~~~ 257 (398)
T 3ez2_A 244 DYDFILVDSGPHLD 257 (398)
T ss_dssp TCSEEEEEECSCCS
T ss_pred cCCEEEEeCCCCcc
Confidence 34899999999663
No 264
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=26.95 E-value=62 Score=27.64 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026576 86 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 86 ~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
.++-+++.+++...+. -+.++|++-+..|..+=-++=+++. +++|.|=|-.|
T Consensus 95 E~P~ll~al~~L~~~P-dlllvDG~GiaHPRr~GlAsHlGv~----l~~PtIGVAKs 146 (246)
T 3ga2_A 95 ELPLIIEAAKKLETEP-DVFLFDGNGYLHYNHMGVATHAAFF----LGKPTIGIAKT 146 (246)
T ss_dssp THHHHHHHHHHCSSCC-SCEEEEBCSSSSTTSCCHHHHHHHH----HTSCEEEEESS
T ss_pred hHHHHHHHHHhcCCCC-CEEEEcCcEEecCCCcchhheeeee----cCCCEEeeecc
Confidence 4567788887654443 5778999999999987655544444 68899999654
No 265
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=24.33 E-value=1.6e+02 Score=25.79 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=42.0
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC-ccchh------hHHHHHHHHHHHHhh-cCCCEEE
Q 026576 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVT------KFISGCMASLSAMVQ-LELPHVN 138 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~------~~is~~l~sls~m~~-l~lP~In 138 (236)
.+.+|.|+|+. .-..++..++++++..-. +.+.+||... +..+. .-++.+.-+|-.+.+ +++|+|.
T Consensus 128 ~~l~I~d~~~~-----si~~i~~~ir~l~~~~gg-~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~ 201 (338)
T 4a1f_A 128 KKLFFYDKSYV-----RIEQIRLQLRKLKSQHKE-LGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIA 201 (338)
T ss_dssp SCEEEECCTTC-----CHHHHHHHHHHHHHHCTT-EEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEE
T ss_pred CCeEEeCCCCC-----cHHHHHHHHHHHHHhcCC-CCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 35778899982 234556667777532103 4677889743 33222 225555555554444 8999999
Q ss_pred E--eccc
Q 026576 139 I--LSKM 143 (236)
Q Consensus 139 V--lsK~ 143 (236)
+ +||.
T Consensus 202 lsQl~R~ 208 (338)
T 4a1f_A 202 LVQLNRS 208 (338)
T ss_dssp EEECCGG
T ss_pred EEecCcc
Confidence 8 6664
No 266
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=23.98 E-value=23 Score=28.41 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=11.9
Q ss_pred CCCEEEEeccccccc
Q 026576 133 ELPHVNILSKMDLVT 147 (236)
Q Consensus 133 ~lP~InVlsK~DLl~ 147 (236)
+.+...|+||++--.
T Consensus 120 ~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 120 NNRFRILLTIIPPYP 134 (209)
T ss_dssp SSSEEEEECSBCCTT
T ss_pred CCCEEEEEEecCCcc
Confidence 678888899998653
No 267
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=23.79 E-value=53 Score=28.84 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=15.3
Q ss_pred HHHHHHhcccCCCCEEEEeCCCcee
Q 026576 55 DWLAEELDNYLDDDYLVFDCPGQIE 79 (236)
Q Consensus 55 ~wl~~~i~~~~~~~Yil~D~PGQiE 79 (236)
.++.+++.....-+|+|||||..+.
T Consensus 248 ~~ll~~l~~~~~yD~VIID~p~~~~ 272 (373)
T 3fkq_A 248 DTLIGNIQGMDNYDEIIVDLPFSLE 272 (373)
T ss_dssp HHHHHHHHHTSCCSEEEEECCCCCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCC
Confidence 3344444433255899999997443
No 268
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=23.67 E-value=3.5e+02 Score=23.18 Aligned_cols=72 Identities=15% Similarity=0.297 Sum_probs=46.2
Q ss_pred hcCCCEEEEecccc-cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHH
Q 026576 131 QLELPHVNILSKMD-LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVL 209 (236)
Q Consensus 131 ~l~lP~InVlsK~D-Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~ 209 (236)
.+++|+|..-+-.- .++++.....|+. ..+......+++++++..|+.-.+..+...+ .++..+.
T Consensus 88 ~~~iP~IS~~at~~~~lsd~~~~p~f~R-------------t~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~g~~~~~ 153 (364)
T 3qel_B 88 QTLTPILGIHGGSSMIMADKDESSMFFQ-------------FGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-PGYQDFV 153 (364)
T ss_dssp HHTCCEEEEEGGGGSCCSSCCTTCCEEE-------------SSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-TTHHHHH
T ss_pred ccCCCEEEeecCCCCcCCCcccCceEEE-------------cCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-ccHHHHH
Confidence 46899998876554 3443312222332 1123455678899999999986666665555 7888888
Q ss_pred HHHHHhh
Q 026576 210 SQIDNCI 216 (236)
Q Consensus 210 ~~Id~~~ 216 (236)
..+.+..
T Consensus 154 ~~l~~~~ 160 (364)
T 3qel_B 154 NKIRSTI 160 (364)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877753
No 269
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=22.82 E-value=49 Score=28.99 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=11.0
Q ss_pred CCCEEEEeCCCcee
Q 026576 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
.-+|||||||..+.
T Consensus 153 ~yD~VIID~pP~l~ 166 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG 166 (361)
T ss_dssp CCSEEEEECCSCCS
T ss_pred CCCEEEEECCCCcC
Confidence 45899999998543
No 270
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=20.89 E-value=34 Score=28.82 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=11.3
Q ss_pred CCCEEEEeCCCcee
Q 026576 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
.-+||||||||...
T Consensus 156 ~yD~ViiD~p~~~~ 169 (307)
T 3end_A 156 DTDVVIFDVLGDVV 169 (307)
T ss_dssp SCSEEEEEECCSSC
T ss_pred cCCEEEEeCCCccc
Confidence 45899999999654
Done!