Query 026577
Match_columns 236
No_of_seqs 215 out of 1416
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:50:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03430 GDPMH GDP-mannose glyc 99.6 2.1E-14 4.6E-19 116.3 11.8 84 127-235 13-106 (144)
2 cd04682 Nudix_Hydrolase_23 Mem 99.6 2.4E-14 5.3E-19 111.9 10.5 84 128-234 2-86 (122)
3 PRK15434 GDP-mannose mannosyl 99.5 6.6E-14 1.4E-18 115.7 11.7 72 127-223 18-89 (159)
4 cd04683 Nudix_Hydrolase_24 Mem 99.5 1.9E-13 4E-18 106.0 10.8 82 128-234 2-86 (120)
5 cd04679 Nudix_Hydrolase_20 Mem 99.5 2.6E-13 5.7E-18 106.2 11.6 60 127-210 3-62 (125)
6 PRK15472 nucleoside triphospha 99.5 7.2E-14 1.6E-18 111.9 8.3 59 128-208 5-63 (141)
7 cd04691 Nudix_Hydrolase_32 Mem 99.5 4.5E-13 9.7E-18 104.4 11.0 59 129-210 3-61 (117)
8 cd04694 Nudix_Hydrolase_35 Mem 99.5 2.6E-13 5.6E-18 110.2 9.7 76 127-224 2-78 (143)
9 cd04670 Nudix_Hydrolase_12 Mem 99.5 3.5E-13 7.6E-18 105.7 10.1 60 126-210 2-61 (127)
10 cd04697 Nudix_Hydrolase_38 Mem 99.5 4.3E-13 9.2E-18 105.7 10.4 62 128-211 2-64 (126)
11 cd04681 Nudix_Hydrolase_22 Mem 99.5 4.9E-13 1.1E-17 105.1 10.4 60 127-210 2-61 (130)
12 cd04678 Nudix_Hydrolase_19 Mem 99.5 8.9E-13 1.9E-17 103.6 11.8 60 127-210 3-62 (129)
13 cd04684 Nudix_Hydrolase_25 Con 99.5 6.6E-13 1.4E-17 103.3 10.8 58 128-210 2-59 (128)
14 cd04693 Nudix_Hydrolase_34 Mem 99.4 6.3E-13 1.4E-17 104.4 9.9 59 128-209 2-61 (127)
15 cd04696 Nudix_Hydrolase_37 Mem 99.4 9.7E-13 2.1E-17 103.1 10.7 59 127-211 3-61 (125)
16 cd04671 Nudix_Hydrolase_13 Mem 99.4 1.3E-12 2.9E-17 103.0 10.7 58 129-210 3-60 (123)
17 cd04664 Nudix_Hydrolase_7 Memb 99.4 8.2E-13 1.8E-17 103.9 9.3 58 128-210 3-62 (129)
18 cd04700 DR1025_like DR1025 fro 99.4 1.7E-12 3.8E-17 104.6 11.4 60 127-210 14-73 (142)
19 cd03426 CoAse Coenzyme A pyrop 99.4 1.3E-12 2.9E-17 107.1 10.9 61 128-210 4-67 (157)
20 cd04673 Nudix_Hydrolase_15 Mem 99.4 1.3E-12 2.8E-17 101.0 10.1 58 128-210 2-59 (122)
21 PRK09438 nudB dihydroneopterin 99.4 5.2E-13 1.1E-17 107.8 8.1 57 125-207 6-62 (148)
22 cd04511 Nudix_Hydrolase_4 Memb 99.4 1.9E-12 4E-17 102.5 11.1 84 125-235 11-94 (130)
23 PRK10776 nucleoside triphospha 99.4 2.9E-12 6.3E-17 99.6 11.4 79 130-234 8-88 (129)
24 cd04692 Nudix_Hydrolase_33 Mem 99.4 2.1E-12 4.6E-17 104.0 10.8 60 127-208 3-66 (144)
25 cd04680 Nudix_Hydrolase_21 Mem 99.4 1.8E-12 4E-17 100.0 10.0 78 128-235 2-82 (120)
26 cd04669 Nudix_Hydrolase_11 Mem 99.4 1.9E-12 4.2E-17 101.4 10.0 76 129-234 3-78 (121)
27 cd03675 Nudix_Hydrolase_2 Cont 99.4 3.3E-12 7.1E-17 101.0 11.4 56 128-209 2-57 (134)
28 cd02885 IPP_Isomerase Isopente 99.4 1.9E-12 4.1E-17 106.9 10.4 64 126-211 30-94 (165)
29 cd03424 ADPRase_NUDT5 ADP-ribo 99.4 2.4E-12 5.2E-17 102.1 10.4 62 126-210 2-63 (137)
30 PF00293 NUDIX: NUDIX domain; 99.4 1.3E-12 2.9E-17 101.7 8.7 61 126-208 2-62 (134)
31 cd04699 Nudix_Hydrolase_39 Mem 99.4 1.9E-12 4E-17 100.9 9.2 62 127-210 2-63 (129)
32 cd04690 Nudix_Hydrolase_31 Mem 99.4 2.9E-12 6.4E-17 98.9 9.8 54 129-209 3-56 (118)
33 cd03671 Ap4A_hydrolase_plant_l 99.4 1.6E-12 3.4E-17 105.2 8.4 58 126-209 3-60 (147)
34 COG1051 ADP-ribose pyrophospha 99.4 3.9E-12 8.4E-17 103.6 10.5 68 127-222 11-78 (145)
35 PRK03759 isopentenyl-diphospha 99.4 4.5E-12 9.8E-17 106.6 10.6 64 126-211 34-98 (184)
36 PRK10546 pyrimidine (deoxy)nuc 99.4 1E-11 2.2E-16 98.1 11.9 69 130-224 7-75 (135)
37 cd03427 MTH1 MutT homolog-1 (M 99.4 6.1E-12 1.3E-16 99.7 10.7 55 132-210 6-60 (137)
38 PLN02325 nudix hydrolase 99.4 9.7E-12 2.1E-16 100.8 11.7 60 126-210 9-68 (144)
39 cd04677 Nudix_Hydrolase_18 Mem 99.3 4.4E-12 9.6E-17 99.6 8.8 58 126-210 7-64 (132)
40 TIGR02150 IPP_isom_1 isopenten 99.3 6.5E-12 1.4E-16 103.2 10.2 62 126-211 27-89 (158)
41 cd04687 Nudix_Hydrolase_28 Mem 99.3 1.2E-11 2.6E-16 97.2 10.9 57 128-210 3-59 (128)
42 cd02883 Nudix_Hydrolase Nudix 99.3 1.4E-11 3E-16 93.5 10.7 80 128-235 2-85 (123)
43 cd03673 Ap6A_hydrolase Diadeno 99.3 8.2E-12 1.8E-16 97.5 9.5 57 128-211 3-62 (131)
44 PRK15393 NUDIX hydrolase YfcD; 99.3 1.3E-11 2.9E-16 103.6 11.2 63 126-210 37-100 (180)
45 TIGR00586 mutt mutator mutT pr 99.3 2.6E-11 5.5E-16 94.6 11.9 80 129-234 7-88 (128)
46 cd03429 NADH_pyrophosphatase N 99.3 7.3E-12 1.6E-16 99.6 8.9 79 129-235 3-81 (131)
47 cd04672 Nudix_Hydrolase_14 Mem 99.3 1.2E-11 2.5E-16 96.8 9.8 54 127-208 3-56 (123)
48 cd03674 Nudix_Hydrolase_1 Memb 99.3 5.6E-12 1.2E-16 100.9 8.0 57 127-210 3-60 (138)
49 cd04688 Nudix_Hydrolase_29 Mem 99.3 2.1E-11 4.6E-16 95.4 11.1 54 129-210 4-57 (126)
50 cd04676 Nudix_Hydrolase_17 Mem 99.3 1.1E-11 2.3E-16 96.1 9.3 55 128-209 4-58 (129)
51 cd04695 Nudix_Hydrolase_36 Mem 99.3 2.1E-11 4.5E-16 96.6 10.3 51 135-210 11-61 (131)
52 cd04674 Nudix_Hydrolase_16 Mem 99.3 2.7E-11 5.9E-16 95.5 10.7 73 135-233 13-85 (118)
53 cd04686 Nudix_Hydrolase_27 Mem 99.3 2.9E-11 6.3E-16 96.0 10.8 53 128-208 2-54 (131)
54 cd04666 Nudix_Hydrolase_9 Memb 99.3 3.8E-11 8.3E-16 94.7 11.1 66 129-223 3-71 (122)
55 cd03428 Ap4A_hydrolase_human_l 99.3 2.1E-11 4.6E-16 95.6 9.1 56 128-211 4-62 (130)
56 cd03672 Dcp2p mRNA decapping e 99.3 2.4E-11 5.3E-16 98.7 9.8 54 129-209 4-58 (145)
57 cd04689 Nudix_Hydrolase_30 Mem 99.3 2.3E-11 5E-16 95.1 9.3 56 127-210 2-57 (125)
58 cd03425 MutT_pyrophosphohydrol 99.3 5.2E-11 1.1E-15 91.3 10.9 77 131-233 6-84 (124)
59 cd04667 Nudix_Hydrolase_10 Mem 99.3 4.3E-11 9.3E-16 92.1 10.2 52 131-210 4-55 (112)
60 cd04685 Nudix_Hydrolase_26 Mem 99.3 9.3E-11 2E-15 93.9 12.4 61 128-210 2-62 (133)
61 PRK00714 RNA pyrophosphohydrol 99.2 2.4E-11 5.3E-16 99.7 8.2 59 126-210 8-66 (156)
62 PRK00241 nudC NADH pyrophospha 99.2 3.4E-11 7.3E-16 106.7 9.4 77 131-235 136-212 (256)
63 cd03676 Nudix_hydrolase_3 Memb 99.2 2.5E-11 5.4E-16 101.5 7.6 61 129-211 37-100 (180)
64 PRK11762 nudE adenosine nucleo 99.2 2.3E-10 5E-15 96.3 13.1 61 128-211 49-109 (185)
65 PRK05379 bifunctional nicotina 99.1 3.6E-10 7.8E-15 103.9 11.7 58 127-209 204-261 (340)
66 PLN02709 nudix hydrolase 99.1 5E-10 1.1E-14 97.2 10.7 64 126-210 33-102 (222)
67 PRK10707 putative NUDIX hydrol 99.1 7.7E-10 1.7E-14 94.0 10.8 55 136-211 42-96 (190)
68 PRK08999 hypothetical protein; 99.1 1.1E-09 2.5E-14 98.7 11.5 79 129-233 8-88 (312)
69 cd04662 Nudix_Hydrolase_5 Memb 99.0 2.2E-09 4.7E-14 85.7 10.6 49 138-208 15-65 (126)
70 cd04661 MRP_L46 Mitochondrial 99.0 3.8E-10 8.2E-15 89.9 6.0 48 136-208 11-58 (132)
71 cd04665 Nudix_Hydrolase_8 Memb 99.0 5.4E-09 1.2E-13 82.3 10.5 53 129-210 3-55 (118)
72 TIGR00052 nudix-type nucleosid 99.0 2.4E-09 5.3E-14 90.5 8.7 65 125-211 43-112 (185)
73 PRK10880 adenine DNA glycosyla 98.9 6.2E-11 1.4E-15 109.2 -2.5 139 13-160 111-263 (350)
74 COG1194 MutY A/G-specific DNA 98.9 1.2E-11 2.7E-16 112.6 -7.3 142 14-165 116-273 (342)
75 TIGR02705 nudix_YtkD nucleosid 98.9 1.1E-08 2.3E-13 84.5 10.7 65 124-220 22-86 (156)
76 PLN02791 Nudix hydrolase homol 98.9 7.9E-09 1.7E-13 103.4 10.7 61 126-208 32-94 (770)
77 PRK10729 nudF ADP-ribose pyrop 98.8 2.1E-08 4.6E-13 85.9 10.1 64 125-210 48-116 (202)
78 PRK15009 GDP-mannose pyrophosp 98.8 5.7E-08 1.2E-12 82.6 12.4 60 128-211 47-113 (191)
79 PLN02552 isopentenyl-diphospha 98.8 1.8E-08 4E-13 88.9 9.3 78 126-209 56-135 (247)
80 COG0494 MutT NTP pyrophosphohy 98.8 1E-08 2.3E-13 79.0 6.7 46 138-209 24-70 (161)
81 PLN03143 nudix hydrolase; Prov 98.8 4.3E-08 9.3E-13 88.4 10.0 63 123-208 125-191 (291)
82 cd04663 Nudix_Hydrolase_6 Memb 98.7 7.4E-08 1.6E-12 76.8 9.6 50 130-207 4-55 (126)
83 COG2816 NPY1 NTP pyrophosphohy 98.7 1.5E-08 3.2E-13 90.3 5.0 84 123-234 140-223 (279)
84 KOG3084 NADH pyrophosphatase I 98.7 1.6E-08 3.6E-13 90.9 5.2 63 124-211 186-248 (345)
85 PRK13910 DNA glycosylase MutY; 98.7 7.9E-10 1.7E-14 99.6 -3.4 135 14-161 75-218 (289)
86 TIGR01084 mutY A/G-specific ad 98.7 6.4E-10 1.4E-14 99.5 -4.2 140 13-161 107-261 (275)
87 cd03670 ADPRase_NUDT9 ADP-ribo 98.6 5.4E-08 1.2E-12 82.5 6.2 53 128-207 36-91 (186)
88 KOG3069 Peroxisomal NUDIX hydr 98.6 1.4E-07 3E-12 81.9 6.7 64 126-210 43-109 (246)
89 cd03431 DNA_Glycosylase_C DNA 98.5 1.6E-06 3.4E-11 66.1 10.6 74 132-234 8-83 (118)
90 KOG2839 Diadenosine and diphos 98.3 1.3E-06 2.9E-11 70.6 6.5 57 128-210 11-70 (145)
91 KOG0648 Predicted NUDIX hydrol 98.0 5.8E-06 1.3E-10 74.3 4.7 67 121-209 110-176 (295)
92 COG1443 Idi Isopentenyldiphosp 97.9 2.3E-05 5.1E-10 65.4 6.4 62 127-210 34-96 (185)
93 KOG3041 Nucleoside diphosphate 97.9 3.7E-05 8.1E-10 65.4 7.5 60 125-208 74-135 (225)
94 KOG2457 A/G-specific adenine D 97.9 8.7E-07 1.9E-11 81.9 -3.0 87 13-108 208-298 (555)
95 PLN02839 nudix hydrolase 97.8 4.6E-05 9.9E-10 70.6 6.7 58 130-209 209-268 (372)
96 PF14815 NUDIX_4: NUDIX domain 97.5 0.00021 4.6E-09 54.9 6.0 78 131-235 2-81 (114)
97 KOG4195 Transient receptor pot 96.0 0.0076 1.7E-07 52.3 3.8 39 139-204 140-178 (275)
98 COG4119 Predicted NTP pyrophos 95.9 0.011 2.3E-07 47.3 3.9 34 153-208 35-68 (161)
99 KOG0142 Isopentenyl pyrophosph 94.5 0.025 5.4E-07 48.5 2.4 69 128-211 54-125 (225)
100 KOG4313 Thiamine pyrophosphoki 93.9 0.057 1.2E-06 47.8 3.4 48 139-208 149-197 (306)
101 COG4112 Predicted phosphoester 91.8 0.64 1.4E-05 38.8 6.5 80 122-219 58-141 (203)
102 PF13869 NUDIX_2: Nucleotide h 90.7 1.5 3.2E-05 37.4 7.8 56 127-210 44-102 (188)
103 PF14443 DBC1: DBC1 85.7 1.6 3.5E-05 34.8 4.6 56 139-213 9-64 (126)
104 KOG2937 Decapping enzyme compl 72.8 0.98 2.1E-05 41.6 -0.4 54 129-209 85-139 (348)
105 PRK10702 endonuclease III; Pro 66.8 1.1 2.5E-05 38.6 -1.3 85 15-109 113-197 (211)
106 KOG1689 mRNA cleavage factor I 61.1 31 0.00067 29.2 6.2 50 128-205 71-123 (221)
107 PRK13913 3-methyladenine DNA g 56.0 2.2 4.7E-05 37.2 -1.5 37 13-52 123-159 (218)
108 TIGR01083 nth endonuclease III 46.8 3.5 7.6E-05 34.7 -1.6 37 13-52 108-144 (191)
109 smart00478 ENDO3c endonuclease 38.0 7.5 0.00016 30.9 -0.9 35 15-52 76-110 (149)
110 COG0177 Nth Predicted EndoIII- 37.5 7.3 0.00016 33.8 -1.1 34 13-49 111-144 (211)
111 KOG4432 Uncharacterized NUDIX 30.4 77 0.0017 29.2 4.2 19 191-209 94-112 (405)
112 PF03487 IL13: Interleukin-13; 29.7 48 0.001 21.2 2.0 13 191-203 24-36 (43)
113 TIGR00588 ogg 8-oxoguanine DNA 28.7 12 0.00027 34.0 -1.2 40 13-54 222-261 (310)
114 KOG4432 Uncharacterized NUDIX 27.8 1.8E+02 0.0038 27.0 6.0 73 124-208 227-316 (405)
115 PF00633 HHH: Helix-hairpin-he 25.1 4.2 9.1E-05 24.2 -3.3 17 13-29 13-29 (30)
116 PF08211 dCMP_cyt_deam_2: Cyti 21.0 1.7E+02 0.0036 23.3 4.0 32 122-155 51-82 (124)
117 KOG1469 Predicted acyl-CoA deh 20.0 1.6E+02 0.0036 26.9 4.2 12 154-165 202-213 (392)
No 1
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.58 E-value=2.1e-14 Score=116.26 Aligned_cols=84 Identities=21% Similarity=0.346 Sum_probs=65.8
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
++|+++|++.+|++|++||... .++|+|.+|||++|++|+ +.+|++||++||||+.
T Consensus 13 v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lPGG~ve~gEs----------------------~~~aa~RE~~EE~Gl~ 68 (144)
T cd03430 13 VSIDLIVENEDGQYLLGKRTNR--PAQGYWFVPGGRIRKNET----------------------LTEAFERIAKDELGLE 68 (144)
T ss_pred EEEEEEEEeCCCeEEEEEccCC--CCCCcEECCCceecCCCC----------------------HHHHHHHHHHHHHCCC
Confidence 5788888888899999999854 578999999999999999 9999999999999998
Q ss_pred CCCCccceeEEeeeeeec----------ceeeeeEEEEe
Q 026577 207 SESLVSYSLLIRYQVVVP----------ALLLCGYMCTS 235 (236)
Q Consensus 207 ~~~l~~~~ll~~~~~~~~----------~~~~~~~~~~~ 235 (236)
+... ...+++.+.+.++ ..+...|+|..
T Consensus 69 v~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (144)
T cd03430 69 FLIS-DAELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKL 106 (144)
T ss_pred cccc-cceEEEEEEEEeccccccCCCccEEEEEEEEEEE
Confidence 8633 2345555543321 24566777764
No 2
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=2.4e-14 Score=111.87 Aligned_cols=84 Identities=25% Similarity=0.429 Sum_probs=61.2
Q ss_pred EEEEEEEeCCCeEEEEEEcCC-CCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNN-VGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~-~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
+|+++++..+|++||+||+.. ...++|+|.||||++|++|+ +++||+||+.||||+.
T Consensus 2 ~v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~----------------------~~~aa~RE~~EE~Gl~ 59 (122)
T cd04682 2 GVALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGET----------------------PLECVLRELLEEIGLT 59 (122)
T ss_pred ceEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCC----------------------HHHHHHHHHHHHhCCc
Confidence 455566667799999999976 56799999999999999998 9999999999999999
Q ss_pred CCCCccceeEEeeeeeecceeeeeEEEE
Q 026577 207 SESLVSYSLLIRYQVVVPALLLCGYMCT 234 (236)
Q Consensus 207 ~~~l~~~~ll~~~~~~~~~~~~~~~~~~ 234 (236)
+.... ..+...+..........-|++.
T Consensus 60 ~~~~~-~~~~~~~~~~~~~~~~~~f~~~ 86 (122)
T cd04682 60 LPESR-IPWFRVYPSASPPGTEHVFVVP 86 (122)
T ss_pred ccccc-cceeEecccCCCCceEEEEEEE
Confidence 86322 2223333322223445555554
No 3
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.54 E-value=6.6e-14 Score=115.73 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=58.2
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
++|.++|.+.+|+|||+||+.. ..+|+|.||||++|++|+ +.+||+||++||||+.
T Consensus 18 ~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lPGG~VE~GEt----------------------~~~Aa~REl~EEtGl~ 73 (159)
T PRK15434 18 ISLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDET----------------------LEAAFERLTMAELGLR 73 (159)
T ss_pred EEEEEEEECCCCEEEEEEccCC--CCCCcEECCceecCCCCC----------------------HHHHHHHHHHHHHCCc
Confidence 4788888877899999999853 568999999999999999 9999999999999998
Q ss_pred CCCCccceeEEeeeeee
Q 026577 207 SESLVSYSLLIRYQVVV 223 (236)
Q Consensus 207 ~~~l~~~~ll~~~~~~~ 223 (236)
+.. ....++++|.+.+
T Consensus 74 v~~-~~~~~~~~~~~~~ 89 (159)
T PRK15434 74 LPI-TAGQFYGVWQHFY 89 (159)
T ss_pred ccc-ccceEEEEEEeec
Confidence 652 2234566655443
No 4
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=1.9e-13 Score=106.03 Aligned_cols=82 Identities=23% Similarity=0.349 Sum_probs=59.6
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
+|.+++. .+|+|||+||... +..+|+|.+|||++|++|+ +.+||+||+.||||+.+
T Consensus 2 ~v~~vi~-~~~~vLL~~r~~~-~~~~~~w~lPgG~ve~gE~----------------------~~~aa~REl~EEtGl~v 57 (120)
T cd04683 2 AVYVLLR-RDDEVLLQRRANT-GYMDGQWALPAGHLEKGED----------------------AVTAAVREAREEIGVTL 57 (120)
T ss_pred cEEEEEE-ECCEEEEEEccCC-CCCCCeEeCCccccCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence 5666666 4789999999854 4668999999999999998 99999999999999987
Q ss_pred CCCccceeEEeeeeeec---ceeeeeEEEE
Q 026577 208 ESLVSYSLLIRYQVVVP---ALLLCGYMCT 234 (236)
Q Consensus 208 ~~l~~~~ll~~~~~~~~---~~~~~~~~~~ 234 (236)
.. ....++..+....+ ..+...|+|.
T Consensus 58 ~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~ 86 (120)
T cd04683 58 DP-EDLRLAHTMHRRTEDIESRIGLFFTVR 86 (120)
T ss_pred Ch-hheEEEEEEEecCCCCceEEEEEEEEE
Confidence 62 22334444333222 2444556664
No 5
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=2.6e-13 Score=106.18 Aligned_cols=60 Identities=35% Similarity=0.567 Sum_probs=53.2
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
++|++++++.+|++||+||+.. ..+|.|.+||||+|++|+ +.+||+||+.||||+.
T Consensus 3 ~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEt----------------------~~eaa~RE~~EEtGl~ 58 (125)
T cd04679 3 VGCGAAILRDDGKLLLVKRLRA--PEAGHWGIPGGKVDWMEA----------------------VEDAVVREIEEETGLS 58 (125)
T ss_pred eEEEEEEECCCCEEEEEEecCC--CCCCeEeCCeeeccCCCC----------------------HHHHHHHHHHHHHCCC
Confidence 4788888888899999999854 457999999999999998 9999999999999999
Q ss_pred CCCC
Q 026577 207 SESL 210 (236)
Q Consensus 207 ~~~l 210 (236)
+...
T Consensus 59 ~~~~ 62 (125)
T cd04679 59 IHST 62 (125)
T ss_pred cccc
Confidence 8754
No 6
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.50 E-value=7.2e-14 Score=111.93 Aligned_cols=59 Identities=27% Similarity=0.472 Sum_probs=51.7
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
.+.+.++.++|++||+||+.....+||+|++|||++|++|+ +.+||+||+.|||||.+
T Consensus 5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs----------------------~~~aa~REl~EEtGl~~ 62 (141)
T PRK15472 5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGER----------------------IEEALRREIREELGEQL 62 (141)
T ss_pred eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCC----------------------HHHHHHHHHHHHHCCce
Confidence 44555566789999999987667899999999999999999 99999999999999976
Q ss_pred C
Q 026577 208 E 208 (236)
Q Consensus 208 ~ 208 (236)
.
T Consensus 63 ~ 63 (141)
T PRK15472 63 L 63 (141)
T ss_pred e
Confidence 4
No 7
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.48 E-value=4.5e-13 Score=104.38 Aligned_cols=59 Identities=39% Similarity=0.518 Sum_probs=49.5
Q ss_pred EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
|++++. .++++||+||+.....++|+|.||||++|++|+ +.+||+||+.||||+...
T Consensus 3 v~~vi~-~~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~----------------------~~~aa~REl~EEtGl~~~ 59 (117)
T cd04691 3 VVGVLF-SDDKVLLERRSLTKNADPGKLNIPGGHIEAGES----------------------QEEALLREVQEELGVDPL 59 (117)
T ss_pred EEEEEE-ECCEEEEEEeCCCCCCCCCeEECcceeecCCCC----------------------HHHHHHHHHHHHHCCCcc
Confidence 344555 458999999986654689999999999999998 999999999999999864
Q ss_pred CC
Q 026577 209 SL 210 (236)
Q Consensus 209 ~l 210 (236)
.+
T Consensus 60 ~~ 61 (117)
T cd04691 60 SY 61 (117)
T ss_pred cc
Confidence 43
No 8
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=2.6e-13 Score=110.17 Aligned_cols=76 Identities=32% Similarity=0.583 Sum_probs=62.3
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
++|++++++.++++||+||+.....++|+|.+||||++++|+ +.++|+||+.||+|+.
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~----------------------~~~aa~RE~~EE~gi~ 59 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGEN----------------------LLEAGLRELNEETGLT 59 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCC----------------------HHHHHHHHHHHHHCCC
Confidence 467888888999999999997766789999999999999998 9999999999999998
Q ss_pred CCCCc-cceeEEeeeeeec
Q 026577 207 SESLV-SYSLLIRYQVVVP 224 (236)
Q Consensus 207 ~~~l~-~~~ll~~~~~~~~ 224 (236)
+.... ...++++|...++
T Consensus 60 ~~~~~~~~~~l~~~~~~~~ 78 (143)
T cd04694 60 LDPIDKSWQVLGLWESVYP 78 (143)
T ss_pred ccccccceeEEeeeccccc
Confidence 86431 1345666655444
No 9
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=3.5e-13 Score=105.74 Aligned_cols=60 Identities=33% Similarity=0.674 Sum_probs=52.9
Q ss_pred ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (236)
Q Consensus 126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (236)
.++|++++++.+++|||+||... ++|.|.||||++|++|+ +.+||.||+.||||+
T Consensus 2 ~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt----------------------~~~aa~RE~~EE~Gl 56 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGED----------------------IFDGAVREVLEETGI 56 (127)
T ss_pred eeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCC----------------------HHHHHHHHHHHHHCC
Confidence 46788899988899999987643 67999999999999998 999999999999999
Q ss_pred CCCCC
Q 026577 206 PSESL 210 (236)
Q Consensus 206 ~~~~l 210 (236)
.....
T Consensus 57 ~~~~~ 61 (127)
T cd04670 57 DTEFV 61 (127)
T ss_pred Cccee
Confidence 88643
No 10
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=4.3e-13 Score=105.71 Aligned_cols=62 Identities=23% Similarity=0.323 Sum_probs=55.3
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEe-ccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~f-PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
++.++++++||+|||+||+......||+|.+ ||||++++|+ +.++|+||+.||||++
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~----------------------~~~aa~REl~EEtGl~ 59 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGES----------------------YLQNAQRELEEELGID 59 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCC----------------------HHHHHHHHHHHHHCCC
Confidence 5678889999999999999776678999998 6999999998 9999999999999999
Q ss_pred CCCCc
Q 026577 207 SESLV 211 (236)
Q Consensus 207 ~~~l~ 211 (236)
...+.
T Consensus 60 ~~~l~ 64 (126)
T cd04697 60 GVQLT 64 (126)
T ss_pred ccccE
Confidence 87553
No 11
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=4.9e-13 Score=105.06 Aligned_cols=60 Identities=25% Similarity=0.510 Sum_probs=53.1
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
.+|.+++.+++|++||++|+.. ..+|.|.+|||++|++|+ +.++|+||+.||||++
T Consensus 2 ~av~~~i~~~~~~vLL~~r~~~--~~~~~w~~PgG~ve~gEs----------------------~~~aa~RE~~EEtGl~ 57 (130)
T cd04681 2 AAVGVLILNEDGELLVVRRARE--PGKGTLDLPGGFVDPGES----------------------AEEALIREIREETGLK 57 (130)
T ss_pred ceEEEEEEcCCCcEEEEEecCC--CCCCcEeCCceeecCCCC----------------------HHHHHHHHHHHHhCCc
Confidence 3677888888999999999854 358999999999999998 9999999999999998
Q ss_pred CCCC
Q 026577 207 SESL 210 (236)
Q Consensus 207 ~~~l 210 (236)
...+
T Consensus 58 ~~~~ 61 (130)
T cd04681 58 VTEL 61 (130)
T ss_pred ccce
Confidence 8754
No 12
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=8.9e-13 Score=103.57 Aligned_cols=60 Identities=33% Similarity=0.546 Sum_probs=53.5
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
++|+++|.+.+|++||.||... ..+|.|.+|||+++++|+ +.+|+.||++||||+.
T Consensus 3 ~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~PGG~ve~gEt----------------------~~~Aa~REl~EE~Gl~ 58 (129)
T cd04678 3 VGVGVFVLNPKGKVLLGKRKGS--HGAGTWALPGGHLEFGES----------------------FEECAAREVLEETGLH 58 (129)
T ss_pred eEEEEEEECCCCeEEEEeccCC--CCCCeEECCcccccCCCC----------------------HHHHHHHHHHHHhCCc
Confidence 4788888888899999999854 568999999999999999 9999999999999998
Q ss_pred CCCC
Q 026577 207 SESL 210 (236)
Q Consensus 207 ~~~l 210 (236)
+..+
T Consensus 59 ~~~~ 62 (129)
T cd04678 59 IENV 62 (129)
T ss_pred ccce
Confidence 8754
No 13
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.46 E-value=6.6e-13 Score=103.30 Aligned_cols=58 Identities=36% Similarity=0.613 Sum_probs=50.4
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
|+.+++.. ++++||+||+... ++|.|.+|||++|++|+ +.+||+||+.||||+..
T Consensus 2 ~~~~ii~~-~~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~----------------------~~~aa~RE~~EEtGl~~ 56 (128)
T cd04684 2 GAYAVIPR-DGKLLLIQKNGGP--YEGRWDLPGGGIEPGES----------------------PEEALHREVLEETGLTV 56 (128)
T ss_pred eeEEEEEe-CCEEEEEEccCCC--CCCeEECCCcccCCCCC----------------------HHHHHHHHHHHHhCcEe
Confidence 56677764 5999999998653 78999999999999998 99999999999999987
Q ss_pred CCC
Q 026577 208 ESL 210 (236)
Q Consensus 208 ~~l 210 (236)
..+
T Consensus 57 ~~~ 59 (128)
T cd04684 57 EIG 59 (128)
T ss_pred ecc
Confidence 653
No 14
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.44 E-value=6.3e-13 Score=104.41 Aligned_cols=59 Identities=29% Similarity=0.451 Sum_probs=52.8
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
.|.+++++.+|+|||+||+.....+||+|++| |||+|++|+ + +||+||+.||||+.
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~----------------------~-~aa~REl~EEtGl~ 58 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGET----------------------S-TAAEREVKEELGLE 58 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCC----------------------H-HHHHHHHHHHhCCC
Confidence 56778888899999999997766789999998 999999999 9 99999999999999
Q ss_pred CCC
Q 026577 207 SES 209 (236)
Q Consensus 207 ~~~ 209 (236)
+..
T Consensus 59 ~~~ 61 (127)
T cd04693 59 LDF 61 (127)
T ss_pred cCh
Confidence 763
No 15
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.44 E-value=9.7e-13 Score=103.07 Aligned_cols=59 Identities=27% Similarity=0.504 Sum_probs=51.0
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
.+|++++.+.+|++||+||.. ++|.|.+|||++|++|+ +.+||+||++||||+.
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs----------------------~~~aa~REl~EEtGl~ 56 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGET----------------------LEEALKREFREETGLK 56 (125)
T ss_pred cEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCC----------------------HHHHHHHHHHHHhCCc
Confidence 356778888789999998763 46999999999999998 9999999999999998
Q ss_pred CCCCc
Q 026577 207 SESLV 211 (236)
Q Consensus 207 ~~~l~ 211 (236)
+..+.
T Consensus 57 ~~~~~ 61 (125)
T cd04696 57 LRDIK 61 (125)
T ss_pred ccccc
Confidence 87543
No 16
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=1.3e-12 Score=103.04 Aligned_cols=58 Identities=29% Similarity=0.548 Sum_probs=51.2
Q ss_pred EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
+++++++.+|++||+||... ..+|.|.+|||++|++|+ +.+||+||++||||+.+.
T Consensus 3 ~~~vv~~~~~~vLl~~r~~~--~~~~~w~lPgG~ve~gEt----------------------~~~aa~REl~EEtG~~~~ 58 (123)
T cd04671 3 VAAVILNNQGEVLLIQEAKR--SCRGKWYLPAGRMEPGET----------------------IEEAVKREVKEETGLDCE 58 (123)
T ss_pred EEEEEEcCCCEEEEEEecCC--CCCCeEECceeecCCCCC----------------------HHHHHHHHHHHHHCCeee
Confidence 56777778899999999854 458999999999999998 999999999999999887
Q ss_pred CC
Q 026577 209 SL 210 (236)
Q Consensus 209 ~l 210 (236)
..
T Consensus 59 ~~ 60 (123)
T cd04671 59 PT 60 (123)
T ss_pred cc
Confidence 54
No 17
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.42 E-value=8.2e-13 Score=103.92 Aligned_cols=58 Identities=29% Similarity=0.403 Sum_probs=51.6
Q ss_pred EEEEEEEeC--CCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577 128 GNGAVVETS--DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (236)
Q Consensus 128 gv~~vl~t~--dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (236)
.|.+++.+. ++++||+||++. ++|.|.+||||+|++|+ +.+||+||+.||||+
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es----------------------~~~aa~RE~~EE~Gl 57 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGES----------------------PAEAARREVAEETGL 57 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCC----------------------HHHHHHHHHHHHHCC
Confidence 567778877 899999999964 78999999999999999 999999999999999
Q ss_pred CCCCC
Q 026577 206 PSESL 210 (236)
Q Consensus 206 ~~~~l 210 (236)
....+
T Consensus 58 ~~~~~ 62 (129)
T cd04664 58 DPERL 62 (129)
T ss_pred Chhhe
Confidence 87543
No 18
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.42 E-value=1.7e-12 Score=104.61 Aligned_cols=60 Identities=27% Similarity=0.393 Sum_probs=52.2
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
.+|++++++.++++||++|... ..+|.|.||||++|++|+ +.+||+||++||||+.
T Consensus 14 ~av~~vv~~~~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEt----------------------~~~aa~REl~EEtGl~ 69 (142)
T cd04700 14 RAAGAVILNERNDVLLVQEKGG--PKKGLWHIPSGAVEDGEF----------------------PQDAAVREACEETGLR 69 (142)
T ss_pred eeEEEEEEeCCCcEEEEEEcCC--CCCCeEECCceecCCCCC----------------------HHHHHHHHHHHhhCce
Confidence 4677788888899999988643 458999999999999999 9999999999999999
Q ss_pred CCCC
Q 026577 207 SESL 210 (236)
Q Consensus 207 ~~~l 210 (236)
+..+
T Consensus 70 ~~~~ 73 (142)
T cd04700 70 VRPV 73 (142)
T ss_pred eecc
Confidence 8755
No 19
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.42 E-value=1.3e-12 Score=107.05 Aligned_cols=61 Identities=30% Similarity=0.603 Sum_probs=52.5
Q ss_pred EEEEEEEeCC--CeEEEEEEcCCCCCCCCeEEeccccCCCC-CCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 128 GNGAVVETSD--KKILLLQRSNNVGEFPGHFVFPGGHPEPQ-DAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 128 gv~~vl~t~d--g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~-e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
+|.+++.+.+ ++|||+||+.....++|.|.||||++|++ |+ +.+||+||+.||||
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs----------------------~~eaa~REl~EEtG 61 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDED----------------------PVATALREAEEEIG 61 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCC----------------------HHHHHHHHHHHHhC
Confidence 5556666655 68999999977667899999999999999 88 99999999999999
Q ss_pred CCCCCC
Q 026577 205 VPSESL 210 (236)
Q Consensus 205 l~~~~l 210 (236)
+....+
T Consensus 62 l~~~~~ 67 (157)
T cd03426 62 LPPDSV 67 (157)
T ss_pred CCccce
Confidence 988754
No 20
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=1.3e-12 Score=101.01 Aligned_cols=58 Identities=34% Similarity=0.530 Sum_probs=50.0
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
+|+++++. ++++||+||+.. .++|.|.||||++|++|+ +.+||+||+.||||+.+
T Consensus 2 ~v~~ii~~-~~~vLl~~r~~~--~~~~~w~~PgG~ie~gE~----------------------~~~aa~RE~~EEtGl~~ 56 (122)
T cd04673 2 AVGAVVFR-GGRVLLVRRANP--PDAGLWSFPGGKVELGET----------------------LEQAALRELLEETGLEA 56 (122)
T ss_pred cEEEEEEE-CCEEEEEEEcCC--CCCCeEECCCcccCCCCC----------------------HHHHHHHHHHHhhCcEe
Confidence 56667774 689999999854 568999999999999998 99999999999999997
Q ss_pred CCC
Q 026577 208 ESL 210 (236)
Q Consensus 208 ~~l 210 (236)
..+
T Consensus 57 ~~~ 59 (122)
T cd04673 57 EVG 59 (122)
T ss_pred eec
Confidence 644
No 21
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.42 E-value=5.2e-13 Score=107.80 Aligned_cols=57 Identities=30% Similarity=0.386 Sum_probs=51.7
Q ss_pred CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
++.+|++++++.+|++||+||.. .+|.|++|||++|++|+ +.+||+||++||||
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lPgG~ve~gEs----------------------~~~aa~REl~EEtG 59 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSVTGSLEEGET----------------------PAQTAIREVKEETG 59 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecC----CCCcEeCCcccCCCCCC----------------------HHHHHHHHHHHHhC
Confidence 56788999998999999999874 36899999999999998 99999999999999
Q ss_pred CCC
Q 026577 205 VPS 207 (236)
Q Consensus 205 l~~ 207 (236)
+.+
T Consensus 60 l~~ 62 (148)
T PRK09438 60 IDV 62 (148)
T ss_pred cCc
Confidence 988
No 22
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.42 E-value=1.9e-12 Score=102.47 Aligned_cols=84 Identities=24% Similarity=0.222 Sum_probs=60.8
Q ss_pred CceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 125 SPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 125 ~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
++..++++++..++++||+||... ...|.|.+|||++|++|+ +.+++.||+.||||
T Consensus 11 ~~~~~v~~ii~~~~~vLL~kr~~~--~~~g~w~lPgG~ve~gE~----------------------~~~a~~REl~EEtG 66 (130)
T cd04511 11 NPKIIVGCVPEWEGKVLLCRRAIE--PRHGFWTLPAGFMENGET----------------------TEQGALRETWEEAG 66 (130)
T ss_pred CCcEEEEEEEecCCEEEEEEecCC--CCCCeEECCcccccCCCC----------------------HHHHHHHHHHHHhC
Confidence 443333334445689999999854 467999999999999999 99999999999999
Q ss_pred CCCCCCccceeEEeeeeeecceeeeeEEEEe
Q 026577 205 VPSESLVSYSLLIRYQVVVPALLLCGYMCTS 235 (236)
Q Consensus 205 l~~~~l~~~~ll~~~~~~~~~~~~~~~~~~~ 235 (236)
+++... .++.++...-...+...|+|+.
T Consensus 67 l~~~~~---~~~~~~~~~~~~~~~~~f~~~~ 94 (130)
T cd04511 67 ARVEID---GLYAVYSVPHISQVYMFYRARL 94 (130)
T ss_pred CEEEee---eEEEEEecCCceEEEEEEEEEE
Confidence 987532 3445554433345566777764
No 23
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.41 E-value=2.9e-12 Score=99.63 Aligned_cols=79 Identities=20% Similarity=0.486 Sum_probs=59.7
Q ss_pred EEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCC
Q 026577 130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSES 209 (236)
Q Consensus 130 ~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~ 209 (236)
++++.+.+|++|+.||+.. +.++|+|+||||++|++|+ +.+++.||+.||||+.+..
T Consensus 8 ~~ii~~~~~~vll~rR~~~-~~~~g~w~~PgG~~~~gE~----------------------~~~a~~Re~~EE~gl~~~~ 64 (129)
T PRK10776 8 VGIIRNPNNEIFITRRAAD-AHMAGKWEFPGGKIEAGET----------------------PEQALIRELQEEVGITVQH 64 (129)
T ss_pred EEEEECCCCEEEEEEecCC-CCCCCeEECCceecCCCCC----------------------HHHHHHHHHHHHHCCceec
Confidence 3455667789999999865 5789999999999999998 8899999999999998654
Q ss_pred CccceeEEeeeeeecc--eeeeeEEEE
Q 026577 210 LVSYSLLIRYQVVVPA--LLLCGYMCT 234 (236)
Q Consensus 210 l~~~~ll~~~~~~~~~--~~~~~~~~~ 234 (236)
. .++..+.+.++. +.+..|.|+
T Consensus 65 ~---~~~~~~~~~~~~~~~~~~~~~~~ 88 (129)
T PRK10776 65 A---TLFEKLEYEFPDRHITLWFWLVE 88 (129)
T ss_pred c---eEEEEEEeeCCCcEEEEEEEEEE
Confidence 2 234445555554 334455554
No 24
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.41 E-value=2.1e-12 Score=103.95 Aligned_cols=60 Identities=27% Similarity=0.366 Sum_probs=53.9
Q ss_pred eEEEEEEEeCC---CeEEEEEEcCCCCCCCCeEEe-ccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHh
Q 026577 127 LGNGAVVETSD---KKILLLQRSNNVGEFPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE 202 (236)
Q Consensus 127 lgv~~vl~t~d---g~vLl~rRs~~~~~~~G~~~f-PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE 202 (236)
+.|.++|++.+ +++|+.+|+.....+||.|++ |||++|++|+ +.+||+||+.||
T Consensus 3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt----------------------~~~aa~REl~EE 60 (144)
T cd04692 3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGET----------------------PLEDGIRELEEE 60 (144)
T ss_pred eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCC----------------------HHHHHHHHHHHH
Confidence 46778888877 999999999876789999999 5999999998 999999999999
Q ss_pred hCCCCC
Q 026577 203 IGVPSE 208 (236)
Q Consensus 203 tGl~~~ 208 (236)
|||.+.
T Consensus 61 tGl~~~ 66 (144)
T cd04692 61 LGLDVS 66 (144)
T ss_pred hCCCCC
Confidence 999875
No 25
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.41 E-value=1.8e-12 Score=99.99 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=58.9
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
++.+++.+.+|++||+||+.. +.|.||||++|++|+ +.+||+||+.||||+.+
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~PgG~ve~gEt----------------------~~~aa~REl~EEtG~~~ 54 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-----PGWYLPGGGLERGET----------------------FAEAARRELLEELGIRL 54 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-----CcEeCCCCcCCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence 577888888899999998743 389999999999998 99999999999999998
Q ss_pred C-CCccceeEEeeeeee--cceeeeeEEEEe
Q 026577 208 E-SLVSYSLLIRYQVVV--PALLLCGYMCTS 235 (236)
Q Consensus 208 ~-~l~~~~ll~~~~~~~--~~~~~~~~~~~~ 235 (236)
. .+ .+++.+.... .......|+|..
T Consensus 55 ~~~~---~~~~~~~~~~~~~~~~~~~f~~~~ 82 (120)
T cd04680 55 AVVA---ELLGVYYHSASGSWDHVIVFRARA 82 (120)
T ss_pred cccc---ceEEEEecCCCCCceEEEEEEecc
Confidence 7 43 2344433322 234455666643
No 26
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=1.9e-12 Score=101.38 Aligned_cols=76 Identities=21% Similarity=0.325 Sum_probs=56.0
Q ss_pred EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
+++++++.+|++||+||... ..+.|.||||++|++|+ +.+|++||++||||+.+.
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~---~~~~w~lPGG~ve~gEs----------------------~~~a~~REl~EEtGl~~~ 57 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKP---GKTYYVFPGGGIEEGET----------------------PEEAAKREALEELGLDVR 57 (121)
T ss_pred eEEEEEeCCCEEEEEEEecC---CCCcEECCceeccCCCC----------------------HHHHHHHHHHHhhCeeEe
Confidence 45677766699999999743 25899999999999999 999999999999999985
Q ss_pred CCccceeEEeeeeeecceeeeeEEEE
Q 026577 209 SLVSYSLLIRYQVVVPALLLCGYMCT 234 (236)
Q Consensus 209 ~l~~~~ll~~~~~~~~~~~~~~~~~~ 234 (236)
. . .++..+.. +......|.|+
T Consensus 58 ~-~--~~~~~~~~--~~~~~~~f~~~ 78 (121)
T cd04669 58 V-E--EIFLIVNQ--NGRTEHYFLAR 78 (121)
T ss_pred e-e--eEEEEEee--CCcEEEEEEEE
Confidence 3 2 23333332 33334455554
No 27
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.40 E-value=3.3e-12 Score=100.99 Aligned_cols=56 Identities=34% Similarity=0.493 Sum_probs=48.1
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
+|++++. .|+++||+||... .++.|.||||++|++|+ +.+||.||++||||+.+
T Consensus 2 ~v~~ii~-~~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs----------------------~~~aa~REl~EEtGl~~ 55 (134)
T cd03675 2 TVAAVVE-RDGRFLLVEEETD---GGLVFNQPAGHLEPGES----------------------LIEAAVRETLEETGWHV 55 (134)
T ss_pred eEEEEEE-ECCEEEEEEEccC---CCceEECCCccCCCCCC----------------------HHHHHHHHHHHHHCccc
Confidence 4555554 6789999999754 56899999999999998 99999999999999988
Q ss_pred CC
Q 026577 208 ES 209 (236)
Q Consensus 208 ~~ 209 (236)
..
T Consensus 56 ~~ 57 (134)
T cd03675 56 EP 57 (134)
T ss_pred cc
Confidence 64
No 28
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.40 E-value=1.9e-12 Score=106.94 Aligned_cols=64 Identities=25% Similarity=0.397 Sum_probs=56.9
Q ss_pred ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
..+|++++.+++|++||+||+.....+||.|++| |||+|++|+ +.+||+||+.||||
T Consensus 30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt----------------------~~eaa~REl~EEtG 87 (165)
T cd02885 30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEG----------------------VKDAAQRRLREELG 87 (165)
T ss_pred eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCC----------------------HHHHHHHHHHHHhC
Confidence 5577788888899999999997766899999996 899999999 99999999999999
Q ss_pred CCCCCCc
Q 026577 205 VPSESLV 211 (236)
Q Consensus 205 l~~~~l~ 211 (236)
+.+..+.
T Consensus 88 l~~~~~~ 94 (165)
T cd02885 88 ITGDLLE 94 (165)
T ss_pred CCccchh
Confidence 9987553
No 29
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.40 E-value=2.4e-12 Score=102.11 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=54.0
Q ss_pred ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (236)
Q Consensus 126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (236)
+-+|.+++++.++++||++|... +..++.|++|||++|++|+ +.+||+||+.||||+
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~-~~~~~~w~~PgG~ve~gEs----------------------~~~aa~RE~~EE~Gl 58 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRP-PVGGWLLELPAGLIDPGED----------------------PEEAARRELEEETGY 58 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeec-CCCCEEEEeCCccCCCCCC----------------------HHHHHHHHHHHHHCC
Confidence 45788899999999999987644 3567899999999999998 999999999999999
Q ss_pred CCCCC
Q 026577 206 PSESL 210 (236)
Q Consensus 206 ~~~~l 210 (236)
....+
T Consensus 59 ~~~~~ 63 (137)
T cd03424 59 EAGDL 63 (137)
T ss_pred Cccce
Confidence 98744
No 30
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.40 E-value=1.3e-12 Score=101.71 Aligned_cols=61 Identities=33% Similarity=0.551 Sum_probs=55.4
Q ss_pred ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (236)
Q Consensus 126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (236)
..+|++++.+.+|+|||+||+......+|.|.+|||+++++|+ +.+||+||+.||||+
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~----------------------~~~aa~REl~EE~g~ 59 (134)
T PF00293_consen 2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGES----------------------PEEAARRELKEETGL 59 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSH----------------------HHHHHHHHHHHHHSE
T ss_pred CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCc----------------------hhhhHHhhhhhcccc
Confidence 3578899999999999999997755688999999999999998 999999999999999
Q ss_pred CCC
Q 026577 206 PSE 208 (236)
Q Consensus 206 ~~~ 208 (236)
.+.
T Consensus 60 ~~~ 62 (134)
T PF00293_consen 60 DVS 62 (134)
T ss_dssp EEE
T ss_pred eec
Confidence 984
No 31
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=1.9e-12 Score=100.90 Aligned_cols=62 Identities=29% Similarity=0.544 Sum_probs=53.1
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
++|++++.+.+|++||.||+.....++|+|.||||++|++|+ +.+||+||+.||||+.
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs----------------------~~~aa~RE~~EE~Gl~ 59 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGET----------------------FEEALKREVYEETGLT 59 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCC----------------------HHHHHHHHHHHhhCcE
Confidence 467777777769999999986644579999999999999998 8999999999999998
Q ss_pred CCCC
Q 026577 207 SESL 210 (236)
Q Consensus 207 ~~~l 210 (236)
+...
T Consensus 60 ~~~~ 63 (129)
T cd04699 60 VTPF 63 (129)
T ss_pred EEee
Confidence 7643
No 32
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=2.9e-12 Score=98.85 Aligned_cols=54 Identities=26% Similarity=0.561 Sum_probs=47.5
Q ss_pred EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
+++++++.+|++||+||.. .|.|.||||+++++|+ +.+||+||+.||||+...
T Consensus 3 ~~~~v~~~~~~vLl~~r~~-----~~~w~~PgG~ve~~Es----------------------~~~aa~REl~EEtGl~~~ 55 (118)
T cd04690 3 AAALILVRDGRVLLVRKRG-----TDVFYLPGGKIEAGET----------------------PLQALIRELSEELGLDLD 55 (118)
T ss_pred EEEEEEecCCeEEEEEECC-----CCcEECCCCccCCCCC----------------------HHHHHHHHHHHHHCCccC
Confidence 4567777899999999873 3789999999999998 999999999999999876
Q ss_pred C
Q 026577 209 S 209 (236)
Q Consensus 209 ~ 209 (236)
.
T Consensus 56 ~ 56 (118)
T cd04690 56 P 56 (118)
T ss_pred h
Confidence 5
No 33
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.38 E-value=1.6e-12 Score=105.17 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=52.0
Q ss_pred ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (236)
Q Consensus 126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (236)
..+|++++++.+|++||+||+... |.|.+|||++|++|+ +.++|+||+.||||+
T Consensus 3 ~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~PgG~~e~gE~----------------------~~~aA~REv~EEtGl 56 (147)
T cd03671 3 RPNVGVVLFNEDGKVFVGRRIDTP----GAWQFPQGGIDEGED----------------------PEQAALRELEEETGL 56 (147)
T ss_pred CceEEEEEEeCCCEEEEEEEcCCC----CCEECCcCCCCCCcC----------------------HHHHHHHHHHHHHCC
Confidence 357888888889999999999653 899999999999998 999999999999999
Q ss_pred CCCC
Q 026577 206 PSES 209 (236)
Q Consensus 206 ~~~~ 209 (236)
.+..
T Consensus 57 ~~~~ 60 (147)
T cd03671 57 DPDS 60 (147)
T ss_pred CcCc
Confidence 9764
No 34
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.37 E-value=3.9e-12 Score=103.55 Aligned_cols=68 Identities=29% Similarity=0.499 Sum_probs=55.3
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
++|++++. .+|+|||+||.+. .++|+|.+|||++|.+|+ +.++|+||++||||+.
T Consensus 11 ~~v~~~i~-~~~~iLLvrR~~~--p~~g~WalPGG~ve~GEt----------------------~eeaa~REl~EETgL~ 65 (145)
T COG1051 11 VAVGALIV-RNGRILLVRRANE--PGAGYWALPGGFVEIGET----------------------LEEAARRELKEETGLR 65 (145)
T ss_pred eeeeEEEE-eCCEEEEEEecCC--CCCCcEeCCCccCCCCCC----------------------HHHHHHHHHHHHhCCc
Confidence 34554444 6679999999966 678999999999999999 9999999999999999
Q ss_pred CCCCccceeEEeeeee
Q 026577 207 SESLVSYSLLIRYQVV 222 (236)
Q Consensus 207 ~~~l~~~~ll~~~~~~ 222 (236)
+..+ .++.++...
T Consensus 66 ~~~~---~~~~v~~~~ 78 (145)
T COG1051 66 VRVL---ELLAVFDDP 78 (145)
T ss_pred ccce---eEEEEecCC
Confidence 6654 456666555
No 35
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.37 E-value=4.5e-12 Score=106.65 Aligned_cols=64 Identities=27% Similarity=0.483 Sum_probs=55.7
Q ss_pred ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
..+|++++++.+|+|||+||+.....+||.|++| |||+|++|+ +.+||+||+.||||
T Consensus 34 h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt----------------------~~~aa~REl~EEtG 91 (184)
T PRK03759 34 HLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGES----------------------LEDAVIRRCREELG 91 (184)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCC----------------------HHHHHHHHHHHHhC
Confidence 4567778888899999999987666789999986 899999998 99999999999999
Q ss_pred CCCCCCc
Q 026577 205 VPSESLV 211 (236)
Q Consensus 205 l~~~~l~ 211 (236)
+.+..+.
T Consensus 92 l~~~~~~ 98 (184)
T PRK03759 92 VEITDLE 98 (184)
T ss_pred CCccccc
Confidence 9886543
No 36
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.36 E-value=1e-11 Score=98.14 Aligned_cols=69 Identities=30% Similarity=0.435 Sum_probs=53.3
Q ss_pred EEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCC
Q 026577 130 GAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSES 209 (236)
Q Consensus 130 ~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~ 209 (236)
.++++..+|++||.||... +.++|+|.||||++|++|+ ..++++||+.||||+.+..
T Consensus 7 ~~~ii~~~~~vLL~~R~~~-~~~~g~w~~PgG~ve~gE~----------------------~~~a~~RE~~EE~Gl~~~~ 63 (135)
T PRK10546 7 VAAIIERDGKILLAQRPAH-SDQAGLWEFAGGKVEPGES----------------------QPQALIRELREELGIEATV 63 (135)
T ss_pred EEEEEecCCEEEEEEccCC-CCCCCcEECCcccCCCCCC----------------------HHHHHHHHHHHHHCCcccc
Confidence 3344457889999999854 4789999999999999998 8899999999999998763
Q ss_pred CccceeEEeeeeeec
Q 026577 210 LVSYSLLIRYQVVVP 224 (236)
Q Consensus 210 l~~~~ll~~~~~~~~ 224 (236)
. .++....+.++
T Consensus 64 ~---~~~~~~~~~~~ 75 (135)
T PRK10546 64 G---EYVASHQREVS 75 (135)
T ss_pred c---eeEEEEEEecC
Confidence 2 23444444444
No 37
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.36 E-value=6.1e-12 Score=99.65 Aligned_cols=55 Identities=31% Similarity=0.423 Sum_probs=47.4
Q ss_pred EEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577 132 VVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL 210 (236)
Q Consensus 132 vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l 210 (236)
+++..+|++||++|+... ++|.|.+|||++|++|+ +.+||+||+.||||+....+
T Consensus 6 ~~i~~~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs----------------------~~~aa~RE~~EEtGl~~~~~ 60 (137)
T cd03427 6 CFIKDPDKVLLLNRKKGP--GWGGWNGPGGKVEPGET----------------------PEECAIRELKEETGLTIDNL 60 (137)
T ss_pred EEEEECCEEEEEEecCCC--CCCeEeCCceeCCCCCC----------------------HHHHHHHHHHHhhCeEeecc
Confidence 334456899999999653 78999999999999998 99999999999999988754
No 38
>PLN02325 nudix hydrolase
Probab=99.36 E-value=9.7e-12 Score=100.78 Aligned_cols=60 Identities=27% Similarity=0.378 Sum_probs=50.6
Q ss_pred ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (236)
Q Consensus 126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (236)
.+++.++++ .+|+|||+||+.. ...|+|.+|||++|++|+ +.++|+||++||||+
T Consensus 9 ~~~v~~vi~-~~~~vLL~rr~~~--~~~g~W~lPGG~ve~gEs----------------------~~~aa~REv~EEtGl 63 (144)
T PLN02325 9 RVAVVVFLL-KGNSVLLGRRRSS--IGDSTFALPGGHLEFGES----------------------FEECAAREVKEETGL 63 (144)
T ss_pred eEEEEEEEE-cCCEEEEEEecCC--CCCCeEECCceeCCCCCC----------------------HHHHHHHHHHHHHCC
Confidence 356666666 4689999999854 445899999999999999 999999999999999
Q ss_pred CCCCC
Q 026577 206 PSESL 210 (236)
Q Consensus 206 ~~~~l 210 (236)
.+..+
T Consensus 64 ~v~~~ 68 (144)
T PLN02325 64 EIEKI 68 (144)
T ss_pred CCcce
Confidence 98754
No 39
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.35 E-value=4.4e-12 Score=99.58 Aligned_cols=58 Identities=31% Similarity=0.574 Sum_probs=50.6
Q ss_pred ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (236)
Q Consensus 126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (236)
..++.+++++.++++||++|+.. |.|.||||+++++|+ +.+||+||++||||+
T Consensus 7 ~~~~~~~v~~~~~~vLL~~r~~~-----~~w~~PgG~v~~gEt----------------------~~~aa~REl~EE~Gi 59 (132)
T cd04677 7 LVGAGVILLNEQGEVLLQKRSDT-----GDWGLPGGAMELGES----------------------LEETARRELKEETGL 59 (132)
T ss_pred ccceEEEEEeCCCCEEEEEecCC-----CcEECCeeecCCCCC----------------------HHHHHHHHHHHHhCC
Confidence 34677778888899999998843 889999999999998 999999999999999
Q ss_pred CCCCC
Q 026577 206 PSESL 210 (236)
Q Consensus 206 ~~~~l 210 (236)
.....
T Consensus 60 ~~~~~ 64 (132)
T cd04677 60 EVEEL 64 (132)
T ss_pred eeeee
Confidence 88754
No 40
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.34 E-value=6.5e-12 Score=103.23 Aligned_cols=62 Identities=21% Similarity=0.417 Sum_probs=54.2
Q ss_pred ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
..+|++++++.+|++||.||+.....+||+|++| |||++++|. +||+||++||||
T Consensus 27 h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE~------------------------eaa~REl~EE~G 82 (158)
T TIGR02150 27 HRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGEL------------------------EAAIRRLREELG 82 (158)
T ss_pred EEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCcccH------------------------HHHHHHHHHHHC
Confidence 3577788888899999999998777899999997 899999884 899999999999
Q ss_pred CCCCCCc
Q 026577 205 VPSESLV 211 (236)
Q Consensus 205 l~~~~l~ 211 (236)
|.+..+.
T Consensus 83 l~~~~~~ 89 (158)
T TIGR02150 83 IPADDVP 89 (158)
T ss_pred CCccccc
Confidence 9987553
No 41
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.34 E-value=1.2e-11 Score=97.23 Aligned_cols=57 Identities=33% Similarity=0.534 Sum_probs=48.4
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
++++++. .++++||+||... ..+.|.+|||++|++|+ +.+||+||+.||||+.+
T Consensus 3 ~a~~iv~-~~~~vLl~~r~~~---~~~~~~lPGG~ve~gEt----------------------~~~aa~RE~~EEtGl~v 56 (128)
T cd04687 3 SAKAVII-KNDKILLIKHHDD---GGVWYILPGGGQEPGET----------------------LEDAAHRECKEEIGIDV 56 (128)
T ss_pred EEEEEEE-ECCEEEEEEEEcC---CCCeEECCCcccCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence 5666666 5789999999743 24899999999999999 99999999999999998
Q ss_pred CCC
Q 026577 208 ESL 210 (236)
Q Consensus 208 ~~l 210 (236)
...
T Consensus 57 ~~~ 59 (128)
T cd04687 57 EIG 59 (128)
T ss_pred ccC
Confidence 754
No 42
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.33 E-value=1.4e-11 Score=93.55 Aligned_cols=80 Identities=31% Similarity=0.532 Sum_probs=60.2
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
++++++.+.++++||.||+.. ++|+|.||||+++++|+ +.++|+||+.||+|+..
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~----------------------~~~~a~RE~~EE~Gl~~ 56 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGET----------------------LEEAAIREVREETGLDV 56 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCC----------------------HHHHHHHHHHHhhCccc
Confidence 466777777799999999965 78999999999999998 89999999999999987
Q ss_pred CCCccceeEEeeeeeec----ceeeeeEEEEe
Q 026577 208 ESLVSYSLLIRYQVVVP----ALLLCGYMCTS 235 (236)
Q Consensus 208 ~~l~~~~ll~~~~~~~~----~~~~~~~~~~~ 235 (236)
... .....+....+ ......|.|+.
T Consensus 57 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (123)
T cd02883 57 DVL---RLLGVYEVESPDEGEHAVVFVFLARL 85 (123)
T ss_pred eee---eEEEEEEeeccCCCceEEEEEEEEEe
Confidence 622 22333333332 35556666653
No 43
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.33 E-value=8.2e-12 Score=97.50 Aligned_cols=57 Identities=30% Similarity=0.465 Sum_probs=48.5
Q ss_pred EEEEEEEeCC---CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 128 GNGAVVETSD---KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 128 gv~~vl~t~d---g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
++++++++.+ ++|||+||... |.|.||||+++++|+ +.++|.||+.||||
T Consensus 3 ~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gEs----------------------~~~aa~REl~EEtG 55 (131)
T cd03673 3 AAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLPKGKLEPGET----------------------PPEAAVREVEEETG 55 (131)
T ss_pred eEEEEEEEccCCCeEEEEEEcCCC-----CcccCCCCccCCCCC----------------------HHHHHHHHHhhhhC
Confidence 4566677665 89999998743 899999999999998 99999999999999
Q ss_pred CCCCCCc
Q 026577 205 VPSESLV 211 (236)
Q Consensus 205 l~~~~l~ 211 (236)
+....+.
T Consensus 56 l~~~~~~ 62 (131)
T cd03673 56 IRAEVGD 62 (131)
T ss_pred CceEecc
Confidence 9887553
No 44
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.33 E-value=1.3e-11 Score=103.64 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=54.2
Q ss_pred ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEE-eccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~-fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
..++.+++++++|++||.+|+.....+||+|. +||||++++|+ +.+||+||+.||||
T Consensus 37 h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs----------------------~~eAA~REL~EEtG 94 (180)
T PRK15393 37 HRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ----------------------LLESARREAEEELG 94 (180)
T ss_pred eEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCC----------------------HHHHHHHHHHHHHC
Confidence 34667788888899999999977667899986 79999999998 99999999999999
Q ss_pred CCCCCC
Q 026577 205 VPSESL 210 (236)
Q Consensus 205 l~~~~l 210 (236)
+....+
T Consensus 95 l~~~~~ 100 (180)
T PRK15393 95 IAGVPF 100 (180)
T ss_pred CCCccc
Confidence 986544
No 45
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=2.6e-11 Score=94.60 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=59.4
Q ss_pred EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
+++++++.||++|+.||... +.++|+|+||||++|++|+ ..+++.||+.||||+.+.
T Consensus 7 ~~~ii~~~~~~vLl~~R~~~-~~~~g~w~~Pgg~ve~ge~----------------------~~~~~~RE~~EE~g~~~~ 63 (128)
T TIGR00586 7 AVGIIRNENGEIIITRRADG-HMFAKLLEFPGGKEEGGET----------------------PEQAVVRELEEEIGIPQH 63 (128)
T ss_pred EEEEEECCCCEEEEEEEeCC-CCCCCeEECCCcccCCCCC----------------------HHHHHHHHHHHHHCCcce
Confidence 34555667789999999854 5889999999999999998 889999999999999875
Q ss_pred CCccceeEEeeeeeecc--eeeeeEEEE
Q 026577 209 SLVSYSLLIRYQVVVPA--LLLCGYMCT 234 (236)
Q Consensus 209 ~l~~~~ll~~~~~~~~~--~~~~~~~~~ 234 (236)
.. ..+....+.+++ +.+..|.|+
T Consensus 64 ~~---~~~~~~~h~~~~~~~~~~~~~~~ 88 (128)
T TIGR00586 64 FS---EFEKLEYEFYPRHITLWFWLLER 88 (128)
T ss_pred ee---eEEEEEEEECCCcEEEEEEEEEE
Confidence 32 224444455554 345555554
No 46
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.32 E-value=7.3e-12 Score=99.58 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=57.2
Q ss_pred EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
|.+.+.+.++++||+||+.. .+|.|.+|||++|++|+ +.++|+||++||||+...
T Consensus 3 v~i~l~~~~~~vLL~~r~~~---~~~~w~lPgG~ie~gEt----------------------~~~aA~REl~EEtGl~~~ 57 (131)
T cd03429 3 VIVLVIDGGDRILLARQPRF---PPGMYSLLAGFVEPGES----------------------LEEAVRREVKEEVGIRVK 57 (131)
T ss_pred EEEEEEeCCCEEEEEEecCC---CCCcCcCCcccccCCCC----------------------HHHHHhhhhhhccCceee
Confidence 34455555589999999743 27999999999999998 999999999999999987
Q ss_pred CCccceeEEeeeeeecceeeeeEEEEe
Q 026577 209 SLVSYSLLIRYQVVVPALLLCGYMCTS 235 (236)
Q Consensus 209 ~l~~~~ll~~~~~~~~~~~~~~~~~~~ 235 (236)
.+. +++......+......|+|..
T Consensus 58 ~~~---~l~~~~~~~~~~~~~~f~~~~ 81 (131)
T cd03429 58 NIR---YVGSQPWPFPSSLMLGFTAEA 81 (131)
T ss_pred eeE---EEeecCCCCCceEEEEEEEEE
Confidence 543 333322223344455677653
No 47
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.32 E-value=1.2e-11 Score=96.76 Aligned_cols=54 Identities=28% Similarity=0.460 Sum_probs=47.7
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
++|.+++++ ++++||++|.. .|.|.+|||+++++|+ +.+||+||++||||+.
T Consensus 3 ~~v~~~i~~-~~~vLL~~~~~-----~~~w~~PGG~ve~gEs----------------------~~~aa~REl~EEtG~~ 54 (123)
T cd04672 3 VDVRAAIFK-DGKILLVREKS-----DGLWSLPGGWADVGLS----------------------PAENVVKEVKEETGLD 54 (123)
T ss_pred ceEEEEEEE-CCEEEEEEEcC-----CCcEeCCccccCCCCC----------------------HHHHHHHHHHHHhCCe
Confidence 578888875 58999999874 4899999999999998 9999999999999998
Q ss_pred CC
Q 026577 207 SE 208 (236)
Q Consensus 207 ~~ 208 (236)
..
T Consensus 55 ~~ 56 (123)
T cd04672 55 VK 56 (123)
T ss_pred ee
Confidence 73
No 48
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.32 E-value=5.6e-12 Score=100.90 Aligned_cols=57 Identities=32% Similarity=0.591 Sum_probs=50.0
Q ss_pred eEEEEEEEeCC-CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577 127 LGNGAVVETSD-KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (236)
Q Consensus 127 lgv~~vl~t~d-g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (236)
+.+++++++.+ ++|||+||+. .|.|.+||||+|++|+ +.+||.||++||||+
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lPgG~ve~gE~----------------------~~~aa~REl~EEtGl 55 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDES----------------------LLEAALRELREETGI 55 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEcC-----CCcEECCceecCCCCC----------------------HHHHHHHHHHHHHCC
Confidence 46778888887 9999999874 3899999999999999 999999999999999
Q ss_pred CCCCC
Q 026577 206 PSESL 210 (236)
Q Consensus 206 ~~~~l 210 (236)
.+..+
T Consensus 56 ~~~~~ 60 (138)
T cd03674 56 ELLGL 60 (138)
T ss_pred Ccccc
Confidence 87644
No 49
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.32 E-value=2.1e-11 Score=95.44 Aligned_cols=54 Identities=24% Similarity=0.387 Sum_probs=45.8
Q ss_pred EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
|.++++ .|++|||+||+. .+.|.+|||++|++|+ +.+||.||+.||||+...
T Consensus 4 v~~vi~-~~~~vLl~~~~~-----~~~w~lPgG~ve~gEs----------------------~~~aa~RE~~EEtGl~~~ 55 (126)
T cd04688 4 AAAIII-HNGKLLVQKNPD-----ETFYRPPGGGIEFGES----------------------SEEALIREFKEELGLKIE 55 (126)
T ss_pred EEEEEE-ECCEEEEEEeCC-----CCeEECCCccccCCCC----------------------HHHHHHHHHHHHhCCcee
Confidence 445555 467999999874 4899999999999998 999999999999999876
Q ss_pred CC
Q 026577 209 SL 210 (236)
Q Consensus 209 ~l 210 (236)
..
T Consensus 56 ~~ 57 (126)
T cd04688 56 IT 57 (126)
T ss_pred cc
Confidence 54
No 50
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.31 E-value=1.1e-11 Score=96.10 Aligned_cols=55 Identities=42% Similarity=0.697 Sum_probs=48.6
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
+|.+++.+.+|++||.||+.. |.|+||||+++++|+ +.+||.||+.||||+..
T Consensus 4 ~v~~ii~~~~~~vLl~~r~~~-----~~w~lPgG~v~~~E~----------------------~~~aa~REl~EE~Gl~~ 56 (129)
T cd04676 4 GVTAVVRDDEGRVLLIRRSDN-----GLWALPGGAVEPGES----------------------PADTAVREVREETGLDV 56 (129)
T ss_pred eEEEEEECCCCeEEEEEecCC-----CcEECCeeccCCCCC----------------------HHHHHHHHHHHHhCcee
Confidence 566777777899999999854 899999999999998 89999999999999987
Q ss_pred CC
Q 026577 208 ES 209 (236)
Q Consensus 208 ~~ 209 (236)
..
T Consensus 57 ~~ 58 (129)
T cd04676 57 EV 58 (129)
T ss_pred Ee
Confidence 53
No 51
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=2.1e-11 Score=96.58 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=45.6
Q ss_pred eCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577 135 TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL 210 (236)
Q Consensus 135 t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l 210 (236)
..++++||+||+.. ++|.|.+|||++|++|+ +.+||+||++||||+....+
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs----------------------~~~aa~RE~~EEtGl~~~~~ 61 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGET----------------------AWQAALRELKEETGISLPEL 61 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECCcccccCCCC----------------------HHHHHHHHHHHHhCCCcccc
Confidence 46789999999854 67999999999999998 99999999999999988754
No 52
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=2.7e-11 Score=95.52 Aligned_cols=73 Identities=26% Similarity=0.418 Sum_probs=52.6
Q ss_pred eCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCCccce
Q 026577 135 TSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSYS 214 (236)
Q Consensus 135 t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l~~~~ 214 (236)
..| ++||++|+.. ..+|.|.||||++|++|+ +.+++.||+.||||+.... ....
T Consensus 13 ~~~-~~lL~~r~~~--~~~~~w~lPgG~ve~~E~----------------------~~~aa~REl~EE~g~~~~~-~~l~ 66 (118)
T cd04674 13 VDD-GLLVIRRGIE--PGRGKLALPGGFIELGET----------------------WQDAVARELLEETGVAVDP-ADIR 66 (118)
T ss_pred ECC-CEEEEEeecC--CCCCeEECCceecCCCCC----------------------HHHHHHHHHHHHHCCcccc-cEEE
Confidence 344 5777777754 457999999999999998 9999999999999998763 2222
Q ss_pred eEEeeeeeecceeeeeEEE
Q 026577 215 LLIRYQVVVPALLLCGYMC 233 (236)
Q Consensus 215 ll~~~~~~~~~~~~~~~~~ 233 (236)
....+......+++.+|++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~ 85 (118)
T cd04674 67 LFDVRSAPDGTLLVFGLLP 85 (118)
T ss_pred EEEEEecCCCeEEEEEEEe
Confidence 3333433334466777765
No 53
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.29 E-value=2.9e-11 Score=96.00 Aligned_cols=53 Identities=32% Similarity=0.534 Sum_probs=45.1
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
+|.++++ .+|+|||+||... +.|.||||++|++|+ +.+||+||++||||+..
T Consensus 2 ~~~~ii~-~~~~vLLv~~~~~-----~~w~lPgG~ve~gEt----------------------~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 2 AVRAIIL-QGDKILLLYTKRY-----GDYKFPGGGVEKGED----------------------HIEGLIRELQEETGATN 53 (131)
T ss_pred cEEEEEE-ECCEEEEEEEcCC-----CcEECccccCCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence 4556666 4789999998742 689999999999998 99999999999999986
Q ss_pred C
Q 026577 208 E 208 (236)
Q Consensus 208 ~ 208 (236)
.
T Consensus 54 ~ 54 (131)
T cd04686 54 I 54 (131)
T ss_pred c
Confidence 3
No 54
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.29 E-value=3.8e-11 Score=94.67 Aligned_cols=66 Identities=26% Similarity=0.397 Sum_probs=49.9
Q ss_pred EEEEEEeCC---CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577 129 NGAVVETSD---KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (236)
Q Consensus 129 v~~vl~t~d---g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (236)
+++++...+ +++||++|... |.|.+|||++|++|+ +.+||+||+.||||+
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~PgG~ve~~E~----------------------~~~aa~RE~~EEtG~ 55 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRRT-----GRWIVPKGGPEKDES----------------------PAEAAAREAWEEAGV 55 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecCC-----CeEECCCCCcCCCCC----------------------HHHHHHHHHHHHhCC
Confidence 344555443 68999998743 899999999999998 999999999999999
Q ss_pred CCCCCccceeEEeeeeee
Q 026577 206 PSESLVSYSLLIRYQVVV 223 (236)
Q Consensus 206 ~~~~l~~~~ll~~~~~~~ 223 (236)
....+ ..+++.+....
T Consensus 56 ~~~~~--~~~l~~~~~~~ 71 (122)
T cd04666 56 RGKIG--KRPLGRFEYRK 71 (122)
T ss_pred ccccc--ceEEEEEEeee
Confidence 87644 13455554443
No 55
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.28 E-value=2.1e-11 Score=95.59 Aligned_cols=56 Identities=39% Similarity=0.638 Sum_probs=46.3
Q ss_pred EEEEEEEeCCC---eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 128 GNGAVVETSDK---KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 128 gv~~vl~t~dg---~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
.++++++..++ ++||+||+. |.|.+||||+|++|+ +.++|+||+.||||
T Consensus 4 ~~g~vi~~~~~~~~~vLl~~~~~------~~w~~PgG~ve~gEs----------------------~~~aa~REl~EEtG 55 (130)
T cd03428 4 SAGAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGED----------------------DLEAALRETEEETG 55 (130)
T ss_pred EEEEEEEEecCCCceEEEEEccC------CcCcCCcCCCCCCCC----------------------HHHHHHHHHHHHHC
Confidence 34455555444 689999884 889999999999998 99999999999999
Q ss_pred CCCCCCc
Q 026577 205 VPSESLV 211 (236)
Q Consensus 205 l~~~~l~ 211 (236)
+....+.
T Consensus 56 l~~~~~~ 62 (130)
T cd03428 56 ITAEQLF 62 (130)
T ss_pred CChhhhh
Confidence 9988654
No 56
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.28 E-value=2.4e-11 Score=98.67 Aligned_cols=54 Identities=30% Similarity=0.476 Sum_probs=45.7
Q ss_pred EEEEEEeCC-CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 129 NGAVVETSD-KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 129 v~~vl~t~d-g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
+++++++.+ +++||+||... +.|.||||++|++|+ +.+||+||++||||+.+
T Consensus 4 ~gaii~~~~~~~vLLvr~~~~-----~~W~lPGG~ve~gEs----------------------~~~AA~REl~EETGl~v 56 (145)
T cd03672 4 YGAIILNEDLDKVLLVKGWKS-----KSWSFPKGKINKDED----------------------DHDCAIREVYEETGFDI 56 (145)
T ss_pred eEEEEEeCCCCEEEEEEecCC-----CCEECCCccCCCCcC----------------------HHHHHHHHHHHhhCccc
Confidence 456666654 69999998633 589999999999998 99999999999999987
Q ss_pred CC
Q 026577 208 ES 209 (236)
Q Consensus 208 ~~ 209 (236)
..
T Consensus 57 ~~ 58 (145)
T cd03672 57 SK 58 (145)
T ss_pred ee
Confidence 64
No 57
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.28 E-value=2.3e-11 Score=95.14 Aligned_cols=56 Identities=34% Similarity=0.593 Sum_probs=47.4
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
+.|.+++. .+|++||+||.. .+.|.+|||++|++|+ +.+||+||++||||+.
T Consensus 2 ~~~~~vi~-~~~~vLlv~~~~-----~~~~~lPGG~ve~gEt----------------------~~~aa~REl~EEtGl~ 53 (125)
T cd04689 2 LRARAIVR-AGNKVLLARVIG-----QPHYFLPGGHVEPGET----------------------AENALRRELQEELGVA 53 (125)
T ss_pred eEEEEEEE-eCCEEEEEEecC-----CCCEECCCCcCCCCCC----------------------HHHHHHHHHHHHhCce
Confidence 35666666 678999999863 2789999999999998 9999999999999998
Q ss_pred CCCC
Q 026577 207 SESL 210 (236)
Q Consensus 207 ~~~l 210 (236)
+...
T Consensus 54 ~~~~ 57 (125)
T cd04689 54 VSDG 57 (125)
T ss_pred eecc
Confidence 8743
No 58
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.27 E-value=5.2e-11 Score=91.30 Aligned_cols=77 Identities=30% Similarity=0.491 Sum_probs=56.9
Q ss_pred EEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577 131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL 210 (236)
Q Consensus 131 ~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l 210 (236)
+++.+++|++||.+|+... .++|+|.||||+++++|+ +.++|.||+.||||+.+...
T Consensus 6 ~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e~----------------------~~~~a~Re~~EE~g~~~~~~ 62 (124)
T cd03425 6 AIIIDDDGRILIAQRPAGK-HLGGLWEFPGGKVEPGET----------------------PEQALVRELREELGIEVEVG 62 (124)
T ss_pred EEEECCCCEEEEEEeCCCC-CCCCeEeCCCcccCCCCC----------------------HHHHHHHHHHHhhCcEEecc
Confidence 4455566999999999664 789999999999999998 89999999999999987643
Q ss_pred ccceeEEeeeeeec--ceeeeeEEE
Q 026577 211 VSYSLLIRYQVVVP--ALLLCGYMC 233 (236)
Q Consensus 211 ~~~~ll~~~~~~~~--~~~~~~~~~ 233 (236)
. .+....+.++ ...+..|.|
T Consensus 63 ~---~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T cd03425 63 E---LLATVEHDYPDKRVTLHVFLV 84 (124)
T ss_pred c---eEEEEEeeCCCCeEEEEEEEE
Confidence 2 2333333333 234445544
No 59
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.27 E-value=4.3e-11 Score=92.07 Aligned_cols=52 Identities=29% Similarity=0.579 Sum_probs=44.6
Q ss_pred EEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577 131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL 210 (236)
Q Consensus 131 ~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l 210 (236)
+++...++++||+||.. |.|.||||+++++|+ +.+||.||+.||||+....+
T Consensus 4 ~~i~~~~~~vLlv~r~~------~~w~~PgG~ve~gE~----------------------~~~aa~REl~EEtGl~~~~~ 55 (112)
T cd04667 4 TVICRRGGRVLLVRKSG------SRWALPGGKIEPGET----------------------PLQAARRELQEETGLQGLDL 55 (112)
T ss_pred EEEEecCCEEEEEEcCC------CcEeCCCCcCCCCCC----------------------HHHHHHHHHHHHhCCcccce
Confidence 34445678999999862 899999999999998 99999999999999987644
No 60
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.26 E-value=9.3e-11 Score=93.92 Aligned_cols=61 Identities=28% Similarity=0.449 Sum_probs=52.9
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
++.+++++.+|+|||+|+.......++.|.+|||++|++|+ +.+|+.||+.||||+..
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~----------------------~~~a~~Re~~EE~G~~~ 59 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGES----------------------PEQAARRELREETGITV 59 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCC----------------------HHHHHHHHHHHHHCCcc
Confidence 46778888999999999886543578999999999999998 99999999999999998
Q ss_pred CCC
Q 026577 208 ESL 210 (236)
Q Consensus 208 ~~l 210 (236)
..+
T Consensus 60 ~~~ 62 (133)
T cd04685 60 ADL 62 (133)
T ss_pred ccc
Confidence 433
No 61
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.24 E-value=2.4e-11 Score=99.70 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=52.1
Q ss_pred ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (236)
Q Consensus 126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (236)
..+|++++++.+|++||+||+.. +|.|.+|||+++++|+ +.+||.||+.||||+
T Consensus 8 ~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P~G~~~~gE~----------------------~~~aa~REl~EEtG~ 61 (156)
T PRK00714 8 RPNVGIILLNRQGQVFWGRRIGQ----GHSWQFPQGGIDPGET----------------------PEQAMYRELYEEVGL 61 (156)
T ss_pred CCeEEEEEEecCCEEEEEEEcCC----CCeEECCcccCCCCcC----------------------HHHHHHHHHHHHhCC
Confidence 34788889988999999999842 5899999999999998 999999999999999
Q ss_pred CCCCC
Q 026577 206 PSESL 210 (236)
Q Consensus 206 ~~~~l 210 (236)
....+
T Consensus 62 ~~~~~ 66 (156)
T PRK00714 62 RPEDV 66 (156)
T ss_pred Cccce
Confidence 87644
No 62
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.24 E-value=3.4e-11 Score=106.72 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=59.8
Q ss_pred EEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577 131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL 210 (236)
Q Consensus 131 ~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l 210 (236)
++++..++++||.||... .+|+|.+|||++|++|+ +.+||+||++||||+.+..+
T Consensus 136 iv~V~~~~~iLL~rr~~~---~~g~wslPgG~vE~GEs----------------------~eeAa~REv~EEtGl~v~~~ 190 (256)
T PRK00241 136 IVAVRRGDEILLARHPRH---RNGVYTVLAGFVEVGET----------------------LEQCVAREVMEESGIKVKNL 190 (256)
T ss_pred EEEEEeCCEEEEEEccCC---CCCcEeCcccCCCCCCC----------------------HHHHhhhhhhhccCceeeee
Confidence 344556789999998744 27999999999999998 99999999999999988754
Q ss_pred ccceeEEeeeeeecceeeeeEEEEe
Q 026577 211 VSYSLLIRYQVVVPALLLCGYMCTS 235 (236)
Q Consensus 211 ~~~~ll~~~~~~~~~~~~~~~~~~~ 235 (236)
.+++.....+|..++.+|++..
T Consensus 191 ---~~~~s~~~~~p~~lm~~f~a~~ 212 (256)
T PRK00241 191 ---RYVGSQPWPFPHSLMLGFHADY 212 (256)
T ss_pred ---EEEEeEeecCCCeEEEEEEEEe
Confidence 3344433346667777888764
No 63
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.23 E-value=2.5e-11 Score=101.49 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=52.9
Q ss_pred EEEEEEeCC--CeEEEEEEcCCCCCCCCeEE-eccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577 129 NGAVVETSD--KKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (236)
Q Consensus 129 v~~vl~t~d--g~vLl~rRs~~~~~~~G~~~-fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (236)
+.+++.+++ +++++.||+..+..+||+|+ +||||++++|+ +.+||+||+.|||||
T Consensus 37 ~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~----------------------~~~aA~REl~EE~Gl 94 (180)
T cd03676 37 LNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEG----------------------PEETLVKECDEEAGL 94 (180)
T ss_pred EEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCC----------------------HHHHHHHHHHHHhCC
Confidence 334566665 89999999999889999995 89999999998 999999999999999
Q ss_pred CCCCCc
Q 026577 206 PSESLV 211 (236)
Q Consensus 206 ~~~~l~ 211 (236)
+...+.
T Consensus 95 ~~~~~~ 100 (180)
T cd03676 95 PEDLVR 100 (180)
T ss_pred CHHHHh
Confidence 887543
No 64
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.22 E-value=2.3e-10 Score=96.32 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=52.1
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
+|.++.++.++++||+|+... +..++.|+||||++|++|+ +.++|+||+.||||+.+
T Consensus 49 ~v~v~~~~~~~~vlLvrq~r~-~~~~~~~elPaG~ve~gE~----------------------~~~aA~REl~EEtG~~~ 105 (185)
T PRK11762 49 AVMIVPILDDDTLLLIREYAA-GTERYELGFPKGLIDPGET----------------------PLEAANRELKEEVGFGA 105 (185)
T ss_pred EEEEEEEeCCCEEEEEEeecC-CCCCcEEEccceeCCCCCC----------------------HHHHHHHHHHHHHCCCC
Confidence 455666677889999998744 4678899999999999998 99999999999999998
Q ss_pred CCCc
Q 026577 208 ESLV 211 (236)
Q Consensus 208 ~~l~ 211 (236)
..+.
T Consensus 106 ~~l~ 109 (185)
T PRK11762 106 RQLT 109 (185)
T ss_pred cceE
Confidence 7653
No 65
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.15 E-value=3.6e-10 Score=103.91 Aligned_cols=58 Identities=29% Similarity=0.484 Sum_probs=49.8
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVP 206 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~ 206 (236)
+.|.+++. .+|+|||+||+.. ..+|+|.+|||++|++|+ +.+||+||+.|||||.
T Consensus 204 vtv~avv~-~~g~VLLvrR~~~--p~~g~W~lPGG~ve~gEt----------------------~~~Aa~REl~EETGl~ 258 (340)
T PRK05379 204 VTVDAVVV-QSGHVLLVRRRAE--PGKGLWALPGGFLEQDET----------------------LLDACLRELREETGLK 258 (340)
T ss_pred eEEEEEEE-ECCEEEEEEecCC--CCCCeEECCcccCCCCCC----------------------HHHHHHHHHHHHHCCc
Confidence 56666665 5789999999864 458999999999999998 9999999999999998
Q ss_pred CCC
Q 026577 207 SES 209 (236)
Q Consensus 207 ~~~ 209 (236)
+..
T Consensus 259 v~~ 261 (340)
T PRK05379 259 LPE 261 (340)
T ss_pred ccc
Confidence 653
No 66
>PLN02709 nudix hydrolase
Probab=99.12 E-value=5e-10 Score=97.19 Aligned_cols=64 Identities=23% Similarity=0.438 Sum_probs=51.3
Q ss_pred ceEEEEEEEeC------CCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHH
Q 026577 126 PLGNGAVVETS------DKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREV 199 (236)
Q Consensus 126 ~lgv~~vl~t~------dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl 199 (236)
.-+|.+.+... +.++||.+|+.....++|.|.||||++|++|.. +.++|+||+
T Consensus 33 ~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~---------------------~~~tAlRE~ 91 (222)
T PLN02709 33 SSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKD---------------------DIATALREA 91 (222)
T ss_pred ccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCC---------------------HHHHHHHHH
Confidence 34555555532 238999999987667899999999999998751 889999999
Q ss_pred HHhhCCCCCCC
Q 026577 200 VEEIGVPSESL 210 (236)
Q Consensus 200 ~EEtGl~~~~l 210 (236)
.||+||+.+.+
T Consensus 92 ~EEiGl~~~~v 102 (222)
T PLN02709 92 REEIGLDPSLV 102 (222)
T ss_pred HHHHCCCchhe
Confidence 99999988744
No 67
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.10 E-value=7.7e-10 Score=93.96 Aligned_cols=55 Identities=33% Similarity=0.633 Sum_probs=46.5
Q ss_pred CCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCCc
Q 026577 136 SDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLV 211 (236)
Q Consensus 136 ~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l~ 211 (236)
.++++|+.||+..-..++|.|.||||++|++|.. +.++|+||++||||+..+.+.
T Consensus 42 ~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~---------------------~~~tA~REl~EEtGl~~~~~~ 96 (190)
T PRK10707 42 PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDAS---------------------LIATALREAQEEVAIPPSAVE 96 (190)
T ss_pred CCCEEEEEEeCCcccCCCCcEEcCCcccCCCccc---------------------HHHHHHHHHHHHHCCCccceE
Confidence 4569999999977667899999999999987541 889999999999999987653
No 68
>PRK08999 hypothetical protein; Provisional
Probab=99.07 E-value=1.1e-09 Score=98.68 Aligned_cols=79 Identities=28% Similarity=0.447 Sum_probs=58.7
Q ss_pred EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
+.+++.+.||++||.||... +.++|+|+||||++|++|+ +.+++.||++||||+.+.
T Consensus 8 ~~~vi~~~~~~vLL~kR~~~-~~~~g~w~~PgG~ve~gE~----------------------~~~aa~RE~~EE~Gl~~~ 64 (312)
T PRK08999 8 AAGVIRDADGRILLARRPEG-KHQGGLWEFPGGKVEPGET----------------------VEQALARELQEELGIEVT 64 (312)
T ss_pred EEEEEECCCCeEEEEEecCC-CCCCCeEECCccCCCCCCC----------------------HHHHHHHHHHHHhCCcee
Confidence 34455567789999999854 5899999999999999998 889999999999999876
Q ss_pred CCccceeEEeeeeeecc--eeeeeEEE
Q 026577 209 SLVSYSLLIRYQVVVPA--LLLCGYMC 233 (236)
Q Consensus 209 ~l~~~~ll~~~~~~~~~--~~~~~~~~ 233 (236)
.. ..+..+.+.+++ ..+..|.+
T Consensus 65 ~~---~~l~~~~h~~~~~~~~i~~y~~ 88 (312)
T PRK08999 65 AA---RPLITVRHDYPDKRVRLDVRRV 88 (312)
T ss_pred cc---eeEEEEEEEcCCCeEEEEEEEE
Confidence 43 224445555554 33444444
No 69
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.04 E-value=2.2e-09 Score=85.65 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=40.8
Q ss_pred CeEEEEEEcCC--CCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 138 KKILLLQRSNN--VGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 138 g~vLl~rRs~~--~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
.+|||++|... .....|.|++|||++|.+|+ +.++|+||+.||||+...
T Consensus 15 ~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~----------------------~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 15 IEVLLVHPGGPFWANKDLGAWSIPKGEYTEGED----------------------PLLAAKREFSEETGFCVD 65 (126)
T ss_pred EEEEEEEccCccccCCCCCEEECCcccCCCCcC----------------------HHHHHHHHHHHHhCCcce
Confidence 46999987432 12346899999999999998 999999999999999875
No 70
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.04 E-value=3.8e-10 Score=89.88 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=41.7
Q ss_pred CCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 136 SDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 136 ~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
.++++||+||+.. ..|.|.||||++|++|+ +.+||+||+.||||+.+.
T Consensus 11 ~~~~~Llvk~~~~---~~g~W~fPgG~ve~gEt----------------------~~eaa~REl~EEtGl~v~ 58 (132)
T cd04661 11 DDTLVLLVQQKVG---SQNHWILPQGKREEGET----------------------LRQTAERTLKELCGNNLK 58 (132)
T ss_pred cCcEEEEEEeecC---CCCeeECCcccccCCCC----------------------HHHHHHHHHHHhhCCCce
Confidence 3568899998743 26899999999999999 999999999999999765
No 71
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.98 E-value=5.4e-09 Score=82.30 Aligned_cols=53 Identities=34% Similarity=0.525 Sum_probs=44.1
Q ss_pred EEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 129 NGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 129 v~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
|.+++. .++++||+++. . +.|++|||++|++|+ +.+||.||+.||+|+...
T Consensus 3 v~vi~~-~~~~vLl~~~~-~-----~~w~lPgG~ve~gE~----------------------~~~aa~REl~EE~G~~~~ 53 (118)
T cd04665 3 VLVICF-YDDGLLLVRHK-D-----RGWEFPGGHVEPGET----------------------IEEAARREVWEETGAELG 53 (118)
T ss_pred EEEEEE-ECCEEEEEEeC-C-----CEEECCccccCCCCC----------------------HHHHHHHHHHHHHCCccC
Confidence 444545 46799999876 2 679999999999998 999999999999999986
Q ss_pred CC
Q 026577 209 SL 210 (236)
Q Consensus 209 ~l 210 (236)
.+
T Consensus 54 ~~ 55 (118)
T cd04665 54 SL 55 (118)
T ss_pred ce
Confidence 44
No 72
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=98.97 E-value=2.4e-09 Score=90.51 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=51.6
Q ss_pred CceEEEEEEEeC-CCeEEEEEEcCCCC----CCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHH
Q 026577 125 SPLGNGAVVETS-DKKILLLQRSNNVG----EFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREV 199 (236)
Q Consensus 125 ~~lgv~~vl~t~-dg~vLl~rRs~~~~----~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl 199 (236)
++-+|++++.+. ++++||+|+.+... ..+..|+||||++|++|+ +.+||+||+
T Consensus 43 ~~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~----------------------~~~aA~REl 100 (185)
T TIGR00052 43 RGNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGES----------------------PEDVARREA 100 (185)
T ss_pred cCCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCC----------------------HHHHHHHHc
Confidence 344666676755 47999999764321 157899999999999998 999999999
Q ss_pred HHhhCCCCCCCc
Q 026577 200 VEEIGVPSESLV 211 (236)
Q Consensus 200 ~EEtGl~~~~l~ 211 (236)
.||||+....+.
T Consensus 101 ~EEtG~~~~~~~ 112 (185)
T TIGR00052 101 IEEAGYQVKNLR 112 (185)
T ss_pred cccccceecceE
Confidence 999999997653
No 73
>PRK10880 adenine DNA glycosylase; Provisional
Probab=98.93 E-value=6.2e-11 Score=109.24 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=88.4
Q ss_pred ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhh-CCCcccC--ceEEEeeeEEecCCCCCCcceEEEec
Q 026577 13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQI-NKSLFNG--QKFRYGGHIMRGEGGSSVESHVCLHL 89 (236)
Q Consensus 13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~-~p~lfng--~kfrl~~~~~~~~~~~~~~~~~~l~l 89 (236)
+...||||++|++++++.+|++ |.|. +|.+|.|+..+...- ...-... +.++-....+.+.+.++++|++.|++
T Consensus 111 L~~LpGIG~~TA~aIl~~af~~-~~~i--VD~nV~RV~~Rl~~i~~~~~~~~~~~~l~~~~~~l~p~~~~~~~nqalm~l 187 (350)
T PRK10880 111 VAALPGVGRSTAGAILSLSLGK-HFPI--LDGNVKRVLARCYAVSGWPGKKEVENRLWQLSEQVTPAVGVERFNQAMMDL 187 (350)
T ss_pred HhcCCCccHHHHHHHHHHHCCC-Ceec--ccHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Confidence 3467999999999999999999 7665 899999998865321 1100110 01211111222334567789999999
Q ss_pred CCcccceeeccCCChhhhhhc----cCCC--Cc----hhhcc-ccCCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEe
Q 026577 90 GLTDYRTFVGTNLNPLWEKFL----VPSE--DD----VIQCQ-HTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVF 158 (236)
Q Consensus 90 g~T~Yr~fv~t~~~p~~~~~~----~~~~--~~----~~~~~-~~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~f 158 (236)
|.+ +||+.+|.|..|. |... +. +.+.+ -........++++..++++++.||... +.+.|+|+|
T Consensus 188 Ga~-----vC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~k~~k~~~~~~~~~~~~~~~~~~~~l~~r~~~-gl~~gl~~f 261 (350)
T PRK10880 188 GAM-----VCTRSKPKCELCPLQNGCIAYANHSWALYPGKKPKQTLPERTGYFLLLQHGDEVWLEQRPPS-GLWGGLFCF 261 (350)
T ss_pred hHH-----hccCCCCCCCCCccHhhhHHHHcCCHhhCCCCCCCCCCCeEEEEEEEEEECCEEEEEECCcc-ChhhccccC
Confidence 999 9999999987652 2111 11 11111 111123333344446789999888844 799999999
Q ss_pred cc
Q 026577 159 PG 160 (236)
Q Consensus 159 PG 160 (236)
|+
T Consensus 262 P~ 263 (350)
T PRK10880 262 PQ 263 (350)
T ss_pred CC
Confidence 96
No 74
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.2e-11 Score=112.58 Aligned_cols=142 Identities=14% Similarity=0.220 Sum_probs=99.6
Q ss_pred cCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhCCCcc---cCceEEEeeeEEecCCC-CCCcceEEEec
Q 026577 14 SCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLF---NGQKFRYGGHIMRGEGG-SSVESHVCLHL 89 (236)
Q Consensus 14 ~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~p~lf---ng~kfrl~~~~~~~~~~-~~~~~~~~l~l 89 (236)
..+||||+||++++++.+||+ |.|. +++||.|++.+.++-....= .-++++-....+..++. ++++|+..|++
T Consensus 116 ~~LpGiG~yTa~Ail~~a~~~-~~~~--lDgNV~RVl~R~f~i~~~~~~~~~~~~~~~~~~~ll~p~~~~~~fnqammdl 192 (342)
T COG1194 116 AALPGVGPYTAGAILSFAFNQ-PEPV--LDGNVKRVLSRLFAISGDIGKPKTKKELWELAEQLLTPDRRPGDFNQAMMDL 192 (342)
T ss_pred HhCCCCcHHHHHHHHHHHhCC-CCce--eecchheeehhhhcccccccccchhHHHHHHHHHhcCCCCChHHHHHHHHHh
Confidence 347999999999999999999 8776 99999999997776432221 22234444344333444 68899999999
Q ss_pred CCcccceeeccCCChhhhhhccC------CCCch----hhcc--ccCCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEE
Q 026577 90 GLTDYRTFVGTNLNPLWEKFLVP------SEDDV----IQCQ--HTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFV 157 (236)
Q Consensus 90 g~T~Yr~fv~t~~~p~~~~~~~~------~~~~~----~~~~--~~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~ 157 (236)
|++ +||..+|.|..|-.. ..+.. .+.+ -.. ..+.+.++...||++++.||... +.+.|+|+
T Consensus 193 GA~-----ICt~~~P~C~~CPl~~~c~a~~~g~~~~~P~k~~k~~~~-~~~~~~~~~~~~~~~~l~kr~~~-gl~~gl~~ 265 (342)
T COG1194 193 GAT-----ICTAKKPKCSLCPLRDNCAAYRNGTPEKYPVKKPKKKLP-RRFAAFLILNRDGEVLLEKRPEK-GLLGGLWC 265 (342)
T ss_pred hhH-----hhcCCCCCCCcCcchHHHHHHHcCCcccCCCcCcccccc-hheeeEEEEccCcchhhhhCccc-Cceecccc
Confidence 999 999999988754211 11111 1111 112 34556677778999999999855 79999999
Q ss_pred eccccCCC
Q 026577 158 FPGGHPEP 165 (236)
Q Consensus 158 fPGG~~Ep 165 (236)
||....+.
T Consensus 266 fP~~e~~~ 273 (342)
T COG1194 266 FPQFEDEA 273 (342)
T ss_pred cccccccc
Confidence 99876544
No 75
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=98.93 E-value=1.1e-08 Score=84.52 Aligned_cols=65 Identities=26% Similarity=0.416 Sum_probs=49.6
Q ss_pred CCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577 124 ASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI 203 (236)
Q Consensus 124 ~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt 203 (236)
.++-.|.++..+ ++++||.++.. ..|++|||++|++|+ +.+||.||+.|||
T Consensus 22 ~~~~~V~ii~~~-~~~~LL~~~~~------~~~elPgG~vE~gEt----------------------~~eaA~REl~EET 72 (156)
T TIGR02705 22 PNPNHVLVIPRY-KDQWLLTEHKR------RGLEFPGGKVEPGET----------------------SKEAAIREVMEET 72 (156)
T ss_pred CCCCEEEEEEEE-CCEEEEEEEcC------CcEECCceecCCCCC----------------------HHHHHHHHHHHHh
Confidence 355566666665 55899888763 239999999999998 9999999999999
Q ss_pred CCCCCCCccceeEEeee
Q 026577 204 GVPSESLVSYSLLIRYQ 220 (236)
Q Consensus 204 Gl~~~~l~~~~ll~~~~ 220 (236)
|+.+..+ ..++.+.
T Consensus 73 G~~~~~~---~~lg~~~ 86 (156)
T TIGR02705 73 GAIVKEL---HYIGQYE 86 (156)
T ss_pred CcEeeee---EEEEEEE
Confidence 9987644 4455443
No 76
>PLN02791 Nudix hydrolase homolog
Probab=98.90 E-value=7.9e-09 Score=103.42 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=54.6
Q ss_pred ceEEEEEEEeC-CCeEEEEEEcCCCCCCCCeEEe-ccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577 126 PLGNGAVVETS-DKKILLLQRSNNVGEFPGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI 203 (236)
Q Consensus 126 ~lgv~~vl~t~-dg~vLl~rRs~~~~~~~G~~~f-PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt 203 (236)
..++.++|++. +|++||.|||..+..+||+|++ ||||++++|+ ..++|+||+.||+
T Consensus 32 HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs----------------------~~eAA~REL~EEL 89 (770)
T PLN02791 32 HRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDT----------------------SLLSAQRELEEEL 89 (770)
T ss_pred eEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCC----------------------HHHHHHHHHHHHh
Confidence 34677888886 6999999999998999999998 7999999998 8899999999999
Q ss_pred CCCCC
Q 026577 204 GVPSE 208 (236)
Q Consensus 204 Gl~~~ 208 (236)
||.+.
T Consensus 90 GI~l~ 94 (770)
T PLN02791 90 GIILP 94 (770)
T ss_pred CCCCC
Confidence 99864
No 77
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=98.84 E-value=2.1e-08 Score=85.92 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=50.1
Q ss_pred CceEEEEEEEeC-CCeEEEEEEcCCCCC----CCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHH
Q 026577 125 SPLGNGAVVETS-DKKILLLQRSNNVGE----FPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREV 199 (236)
Q Consensus 125 ~~lgv~~vl~t~-dg~vLl~rRs~~~~~----~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl 199 (236)
++-+|+++.++. +++|+|+|+.+.... .+-.|++|+|++|++|+ +.+||+||+
T Consensus 48 ~~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~----------------------p~~aA~REL 105 (202)
T PRK10729 48 RGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGES----------------------VEDVARREA 105 (202)
T ss_pred cCCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCC----------------------HHHHHHHHH
Confidence 333566666776 479999998755211 23579999999999998 999999999
Q ss_pred HHhhCCCCCCC
Q 026577 200 VEEIGVPSESL 210 (236)
Q Consensus 200 ~EEtGl~~~~l 210 (236)
.||||+....+
T Consensus 106 ~EETGy~a~~~ 116 (202)
T PRK10729 106 IEEAGLIVGRT 116 (202)
T ss_pred HHHhCceeeEE
Confidence 99999997654
No 78
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=98.84 E-value=5.7e-08 Score=82.64 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=47.2
Q ss_pred EEEEEEEeC-CCeEEEEEEcCCCCC------CCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHH
Q 026577 128 GNGAVVETS-DKKILLLQRSNNVGE------FPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVV 200 (236)
Q Consensus 128 gv~~vl~t~-dg~vLl~rRs~~~~~------~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~ 200 (236)
+|++++.+. +++++|+|+.+.. . .+=.|++|+|.+|++ . +.+||.||+.
T Consensus 47 ~v~Vl~~~~~~~~vvLvrQyR~~-v~~~~~~~~~~lElPAG~vd~~-~----------------------p~~aA~REL~ 102 (191)
T PRK15009 47 GATILLYNAKKKTVVLIRQFRVA-TWVNGNESGQLIETCAGLLDND-E----------------------PEVCIRKEAI 102 (191)
T ss_pred EEEEEEEECCCCEEEEEEccccc-ccccCCCCceEEEEeccccCCC-C----------------------HHHHHHHHHH
Confidence 566666665 6799999988553 3 445689999999964 4 8899999999
Q ss_pred HhhCCCCCCCc
Q 026577 201 EEIGVPSESLV 211 (236)
Q Consensus 201 EEtGl~~~~l~ 211 (236)
||||+....+.
T Consensus 103 EETGy~a~~~~ 113 (191)
T PRK15009 103 EETGYEVGEVR 113 (191)
T ss_pred HhhCCccceEE
Confidence 99999887653
No 79
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.82 E-value=1.8e-08 Score=88.88 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=54.9
Q ss_pred ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEec-cccCCCCCCCCCCCCCCCCCch-hhhccchHhHHHHHHHHHHHhh
Q 026577 126 PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFP-GGHPEPQDAGITSHPCGSTDSE-FINHKVSQEMFDSITREVVEEI 203 (236)
Q Consensus 126 ~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fP-GG~~Ep~e~~~~~~~~~~~~~~-~~~~~~~~~l~~aa~REl~EEt 203 (236)
..++.++|++++|++||.||+..+..+||+|+.. ||||..+++.. .+|.+ .+....+....+||+||+.|||
T Consensus 56 Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~------e~~~e~~~~~~~~~~~~eAA~REL~EEl 129 (247)
T PLN02552 56 HRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPN------EVDRESELIDGNVLGVKNAAQRKLLHEL 129 (247)
T ss_pred EEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccc------cccccccccccchhhHHHHHHhHHHHHh
Confidence 3577889999999999999999888999999875 68888775410 00000 0000001115689999999999
Q ss_pred CCCCCC
Q 026577 204 GVPSES 209 (236)
Q Consensus 204 Gl~~~~ 209 (236)
||....
T Consensus 130 GI~~~~ 135 (247)
T PLN02552 130 GIPAED 135 (247)
T ss_pred CCCccc
Confidence 999654
No 80
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.82 E-value=1e-08 Score=78.98 Aligned_cols=46 Identities=33% Similarity=0.615 Sum_probs=39.8
Q ss_pred CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHH-HHHHHHHHhhCCCCCC
Q 026577 138 KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFD-SITREVVEEIGVPSES 209 (236)
Q Consensus 138 g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~-aa~REl~EEtGl~~~~ 209 (236)
+++++.+|.... |.|.||||++|++|. +.. ||+||+.||||+....
T Consensus 24 ~~vl~~~~~~~~----~~~~~PgG~ve~~e~----------------------~~~~aa~RE~~EEtGl~~~~ 70 (161)
T COG0494 24 GEVLLAQRRDDG----GLWELPGGKVEPGEE----------------------LPEEAAARELEEETGLRVKD 70 (161)
T ss_pred CEEeEEEccccC----CceecCCcccCCCCc----------------------hHHHHHHHHHHHHhCCeeee
Confidence 788888888552 799999999999998 356 9999999999998874
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=98.77 E-value=4.3e-08 Score=88.39 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=47.0
Q ss_pred cCCceEEEEEEE-eCCCe--EEEEEEcCCCCCCCCeEEeccccCCCC-CCCCCCCCCCCCCchhhhccchHhHHHHHHHH
Q 026577 123 TASPLGNGAVVE-TSDKK--ILLLQRSNNVGEFPGHFVFPGGHPEPQ-DAGITSHPCGSTDSEFINHKVSQEMFDSITRE 198 (236)
Q Consensus 123 ~~~~lgv~~vl~-t~dg~--vLl~rRs~~~~~~~G~~~fPGG~~Ep~-e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~RE 198 (236)
..++-+|++++. +.+++ ++|+|+.+. ....-.|+||||.+|++ ++ +.++|+||
T Consensus 125 ~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~-pvg~~~lE~PAG~lD~~~ed----------------------p~~aA~RE 181 (291)
T PLN03143 125 FARGPAVAVLILLESEGETYAVLTEQVRV-PVGKFVLELPAGMLDDDKGD----------------------FVGTAVRE 181 (291)
T ss_pred EEcCCeEEEEEEEeCCCCEEEEEEEeEec-CCCcEEEEecccccCCCCCC----------------------HHHHHHHH
Confidence 344445555554 44555 899998853 34455899999999985 45 89999999
Q ss_pred HHHhhCCCCC
Q 026577 199 VVEEIGVPSE 208 (236)
Q Consensus 199 l~EEtGl~~~ 208 (236)
+.||||+.+.
T Consensus 182 L~EETG~~~~ 191 (291)
T PLN03143 182 VEEETGIKLK 191 (291)
T ss_pred HHHHHCCccc
Confidence 9999999864
No 82
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.75 E-value=7.4e-08 Score=76.84 Aligned_cols=50 Identities=28% Similarity=0.436 Sum_probs=38.3
Q ss_pred EEEEEeCCC--eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 130 GAVVETSDK--KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 130 ~~vl~t~dg--~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
.+++...++ +|++.|.. . +.|.+|||++|++|+ +.+||+||+.||||+..
T Consensus 4 ~~~~~~~~~~~~ll~~r~~-~-----~~~~lPgG~ve~~E~----------------------~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 4 PAVLRRNGEVLELLVFEHP-L-----AGFQIVKGTVEPGET----------------------PEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEeCCceEEEEEEEcC-C-----CcEECCCccCCCCCC----------------------HHHHHHHHHHHHHCCee
Confidence 444443443 55555443 2 459999999999998 99999999999999987
No 83
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.5e-08 Score=90.30 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=65.9
Q ss_pred cCCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHh
Q 026577 123 TASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE 202 (236)
Q Consensus 123 ~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE 202 (236)
+.+.--+.++++..+++++|.++.++ .+|++..-+|.+||+|+ +++|+.||++||
T Consensus 140 fPR~dP~vIv~v~~~~~ilLa~~~~h---~~g~yS~LAGFVE~GET----------------------lE~AV~REv~EE 194 (279)
T COG2816 140 FPRIDPCVIVAVIRGDEILLARHPRH---FPGMYSLLAGFVEPGET----------------------LEQAVAREVFEE 194 (279)
T ss_pred CCCCCCeEEEEEecCCceeecCCCCC---CCcceeeeeecccCCcc----------------------HHHHHHHHHHHh
Confidence 33333344455555667888888855 39999999999999999 999999999999
Q ss_pred hCCCCCCCccceeEEeeeeeecceeeeeEEEE
Q 026577 203 IGVPSESLVSYSLLIRYQVVVPALLLCGYMCT 234 (236)
Q Consensus 203 tGl~~~~l~~~~ll~~~~~~~~~~~~~~~~~~ 234 (236)
+||.+..+ +..+...+.+|..++.|||..
T Consensus 195 ~Gi~V~~v---rY~~SQPWPfP~SLMigf~ae 223 (279)
T COG2816 195 VGIKVKNV---RYVGSQPWPFPHSLMLGFMAE 223 (279)
T ss_pred hCeEEeee---eEEeccCCCCchhhhhhheee
Confidence 99999866 456666678999988888763
No 84
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=98.71 E-value=1.6e-08 Score=90.86 Aligned_cols=63 Identities=27% Similarity=0.403 Sum_probs=52.2
Q ss_pred CCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577 124 ASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI 203 (236)
Q Consensus 124 ~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt 203 (236)
-.|+-+ .+|++.||+..|..|... ..+|+|..++|.+||+|+ ++++++||++||+
T Consensus 186 ~dPvVI-m~li~~d~~~~LL~R~~r--~~~gl~t~lAGFlEpGES----------------------~eeav~REtwEEt 240 (345)
T KOG3084|consen 186 TDPVVI-MLLIDHDGKHALLGRQKR--YPPGLWTCLAGFLEPGES----------------------IEEAVRRETWEET 240 (345)
T ss_pred CCCeEE-EEEEcCCCCEeeeecccC--CCCchhhhhhccCCcccc----------------------HHHHHHHHHHHHh
Confidence 345544 456678888777777543 778999999999999999 9999999999999
Q ss_pred CCCCCCCc
Q 026577 204 GVPSESLV 211 (236)
Q Consensus 204 Gl~~~~l~ 211 (236)
||+++.++
T Consensus 241 Gi~V~~I~ 248 (345)
T KOG3084|consen 241 GIEVEVIS 248 (345)
T ss_pred CceeeeEe
Confidence 99999764
No 85
>PRK13910 DNA glycosylase MutY; Provisional
Probab=98.70 E-value=7.9e-10 Score=99.57 Aligned_cols=135 Identities=10% Similarity=0.103 Sum_probs=84.5
Q ss_pred cCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhCCCcccCceEEEeeeEEecCCCCCCcceEEEecCCcc
Q 026577 14 SCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTD 93 (236)
Q Consensus 14 ~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~p~lfng~kfrl~~~~~~~~~~~~~~~~~~l~lg~T~ 93 (236)
...||||++|++++++.+|++ |.+. +|.+|.|+..+...-.+.. +...++.....+.+.+.+.+.+++.|++|.+
T Consensus 75 ~~LpGIG~kTA~aIl~~af~~-~~~~--VD~nV~RVl~Rl~g~~~~~-~~~~l~~~~~~~l~~~~~~~~nqaLm~~Ga~- 149 (289)
T PRK13910 75 LKLPGIGAYTANAILCFGFRE-KSAC--VDANIKRVLLRLFGLDPNI-HAKDLQIKANDFLNLNESFNHNQALIDLGAL- 149 (289)
T ss_pred HhCCCCCHHHHHHHHHHHCCC-CcCc--ccHHHHHHHHHHhcCCCCc-cHHHHHHHHHHhCCccchHHHHHHHHHHhHH-
Confidence 367999999999999999999 7654 9999999998653321110 1111221111222334456789999999999
Q ss_pred cceeeccCCChhhhhhc----cCCCCch----hhccccCC-ceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccc
Q 026577 94 YRTFVGTNLNPLWEKFL----VPSEDDV----IQCQHTAS-PLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGG 161 (236)
Q Consensus 94 Yr~fv~t~~~p~~~~~~----~~~~~~~----~~~~~~~~-~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG 161 (236)
+||+ +|.|..|. |.+.... .+.+-... .....+++. .+|++++.||. .+.+.|+|+||+.
T Consensus 150 ----iC~~-~P~C~~CPl~~~C~~~~~~~~~~~~~kk~~~~~~~~~~~~~-~~~~~ll~kr~--~~l~~gl~~fP~~ 218 (289)
T PRK13910 150 ----ICSP-KPKCAICPLNPYCLGKNNPEKHTLKKKQEIVQEERYLGVVI-QNNQIALEKIE--QKLYLGMHHFPNL 218 (289)
T ss_pred ----HcCC-CCCCCCCcChhhhhhhhcCCccccCCCCCCCceEEEEEEEE-ECCEEEEEECC--CchhcccccCCCC
Confidence 9998 79887552 2221111 11110111 122223444 57899998884 3699999999963
No 86
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=98.69 E-value=6.4e-10 Score=99.55 Aligned_cols=140 Identities=14% Similarity=0.194 Sum_probs=88.8
Q ss_pred ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhh--CCCc-ccCceEEEeeeEEecCCCCCCcceEEEec
Q 026577 13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQI--NKSL-FNGQKFRYGGHIMRGEGGSSVESHVCLHL 89 (236)
Q Consensus 13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~--~p~l-fng~kfrl~~~~~~~~~~~~~~~~~~l~l 89 (236)
+...||||++|++++++.+|++ |.|. +|.+|.|+..+...- .+.- -....++.....+.+.+.++++|++.|++
T Consensus 107 L~~LpGIG~~TA~~Il~~a~~~-~~~~--vD~~v~RVl~Rl~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~~~n~alm~l 183 (275)
T TIGR01084 107 LAALPGVGRYTAGAILSFALNK-PYPI--LDGNVKRVLSRLFAVEGWPGKKKVENRLWTLAESLLPKADPEAFNQALMDL 183 (275)
T ss_pred HHhCCCCCHHHHHHHHHHHCCC-CCCc--chHhHHHHHHHHccCcCCCCHHHHHHHHHHHHHHHCChhhHHHHHHHHHHH
Confidence 3367999999999999999999 7665 999999998865321 1100 00001111112233334566789999999
Q ss_pred CCcccceeeccCCChhhhhhc----cCC--CCch----hhc-cccCCceE-EEEEEEeCCCeEEEEEEcCCCCCCCCeEE
Q 026577 90 GLTDYRTFVGTNLNPLWEKFL----VPS--EDDV----IQC-QHTASPLG-NGAVVETSDKKILLLQRSNNVGEFPGHFV 157 (236)
Q Consensus 90 g~T~Yr~fv~t~~~p~~~~~~----~~~--~~~~----~~~-~~~~~~lg-v~~vl~t~dg~vLl~rRs~~~~~~~G~~~ 157 (236)
|.+ +|+..+|.|..|. |.. .+.. .+. .-...... ...++...+|++++.||... +.+.|+|+
T Consensus 184 G~~-----vC~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~gl~~ 257 (275)
T TIGR01084 184 GAM-----ICTRKKPKCDLCPLQDFCLAYQQGTWEEYPVKKPKAAPPERTTYFLVLQNYDGEVLLEQRPEK-GLWGGLYC 257 (275)
T ss_pred hHH-----HcCCCCCCCCCCCChhhCHHHHcCCHhhcCCCCCCCCCCeEEEEEEEEEeCCCeEEEEeCCCC-chhhcccc
Confidence 999 9999999987652 211 1110 110 01111223 33344456789999999854 69999999
Q ss_pred eccc
Q 026577 158 FPGG 161 (236)
Q Consensus 158 fPGG 161 (236)
||+.
T Consensus 258 ~p~~ 261 (275)
T TIGR01084 258 FPQF 261 (275)
T ss_pred CCCC
Confidence 9973
No 87
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.64 E-value=5.4e-08 Score=82.50 Aligned_cols=53 Identities=25% Similarity=0.507 Sum_probs=42.2
Q ss_pred EEEEEEEeCC---CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 128 GNGAVVETSD---KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 128 gv~~vl~t~d---g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
+.++++..++ -++|++||.. .|.|.+|||++|++|+ +.+||+||+.||||
T Consensus 36 ~~~~i~~~~~~~~l~vLl~~r~~-----~g~walPGG~v~~~E~----------------------~~~aa~Rel~EEt~ 88 (186)
T cd03670 36 GDGSIHPKSGKPILQFVAIKRPD-----SGEWAIPGGMVDPGEK----------------------ISATLKREFGEEAL 88 (186)
T ss_pred CCEEEEecCCCCeeEEEEEEeCC-----CCcCcCCeeeccCCCC----------------------HHHHHHHHHHHHHc
Confidence 4344555442 3788888863 3899999999999998 99999999999997
Q ss_pred CCC
Q 026577 205 VPS 207 (236)
Q Consensus 205 l~~ 207 (236)
+.+
T Consensus 89 l~l 91 (186)
T cd03670 89 NSL 91 (186)
T ss_pred ccc
Confidence 654
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.57 E-value=1.4e-07 Score=81.86 Aligned_cols=64 Identities=28% Similarity=0.445 Sum_probs=51.9
Q ss_pred ceEEEEEEEeC-C--CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHh
Q 026577 126 PLGNGAVVETS-D--KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE 202 (236)
Q Consensus 126 ~lgv~~vl~t~-d--g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE 202 (236)
..+|.+.+.+. + .+||+.|||.....++|..+||||+.|+.|.. -..+|+||..||
T Consensus 43 ~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s---------------------~~~tAlREt~EE 101 (246)
T KOG3069|consen 43 KAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKS---------------------DIQTALRETEEE 101 (246)
T ss_pred CccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccc---------------------hHHHHHHHHHHH
Confidence 34555555433 2 47999999999999999999999999999872 458999999999
Q ss_pred hCCCCCCC
Q 026577 203 IGVPSESL 210 (236)
Q Consensus 203 tGl~~~~l 210 (236)
+|++.+.+
T Consensus 102 IGl~~~~~ 109 (246)
T KOG3069|consen 102 IGLDPELV 109 (246)
T ss_pred hCCCHHHh
Confidence 99998753
No 89
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.50 E-value=1.6e-06 Score=66.08 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=50.0
Q ss_pred EEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCCc
Q 026577 132 VVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLV 211 (236)
Q Consensus 132 vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l~ 211 (236)
+++..+|++|+.||.. .+.++|+|+||+|..+.++. ..++..+|+.+|.++..
T Consensus 8 ~ii~~~~~~ll~kR~~-~gl~~glwefP~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~---- 60 (118)
T cd03431 8 VVIRNDGRVLLEKRPE-KGLLAGLWEFPSVEWEEEAD----------------------GEEALLSALKKALRLSL---- 60 (118)
T ss_pred EEEecCCeEEEEECCC-CCCCCcceeCCCccccCCcC----------------------HHHHHHHHHHHHhCccc----
Confidence 3344578999999975 47999999999998887765 56777788888876411
Q ss_pred cceeEEeeeeeecc--eeeeeEEEE
Q 026577 212 SYSLLIRYQVVVPA--LLLCGYMCT 234 (236)
Q Consensus 212 ~~~ll~~~~~~~~~--~~~~~~~~~ 234 (236)
..++...+.+++ +.+.-|.|+
T Consensus 61 --~~~~~~~H~fth~~~~~~~~~~~ 83 (118)
T cd03431 61 --EPLGTVKHTFTHFRLTLHVYLAR 83 (118)
T ss_pred --ccceeEEEecCCeEEEEEEEEEE
Confidence 113344555554 344455554
No 90
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.33 E-value=1.3e-06 Score=70.63 Aligned_cols=57 Identities=32% Similarity=0.492 Sum_probs=45.4
Q ss_pred EEEEEEEeCCC---eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 128 GNGAVVETSDK---KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 128 gv~~vl~t~dg---~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
-++++....++ +|||+.-|++ +-.|.||+|+.||+|+ ..++|+||+.||.|
T Consensus 11 vagCi~~r~~~~~ieVLlvsSs~~----~~~wi~PKGGwE~dE~----------------------~~eAA~REt~EEAG 64 (145)
T KOG2839|consen 11 VAGCICYRSDKEKIEVLLVSSSKK----PHRWIVPKGGWEPDES----------------------VEEAALRETWEEAG 64 (145)
T ss_pred EEEeeeeeecCcceEEEEEecCCC----CCCccCCCCCCCCCCC----------------------HHHHHHHHHHHHhC
Confidence 44555555665 6888876643 5789999999999998 88999999999999
Q ss_pred CCCCCC
Q 026577 205 VPSESL 210 (236)
Q Consensus 205 l~~~~l 210 (236)
|.-...
T Consensus 65 v~G~l~ 70 (145)
T KOG2839|consen 65 VKGKLG 70 (145)
T ss_pred ceeeee
Confidence 987744
No 91
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.02 E-value=5.8e-06 Score=74.29 Aligned_cols=67 Identities=27% Similarity=0.484 Sum_probs=56.7
Q ss_pred cccCCceEEEEEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHH
Q 026577 121 QHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVV 200 (236)
Q Consensus 121 ~~~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~ 200 (236)
++.++-+||++.+++..++|++++-.......+|.|-+|+|.++++|. +.+.++||++
T Consensus 110 ~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~----------------------i~~gavrEvk 167 (295)
T KOG0648|consen 110 ANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGED----------------------IWHGAVREVK 167 (295)
T ss_pred CchhhheeeeeeEecCCceeEEEEecccceeecccccccceEeccccc----------------------chhhhhhhhH
Confidence 456788999999999888988887543444678999999999999998 9999999999
Q ss_pred HhhCCCCCC
Q 026577 201 EEIGVPSES 209 (236)
Q Consensus 201 EEtGl~~~~ 209 (236)
||||++...
T Consensus 168 eetgid~ef 176 (295)
T KOG0648|consen 168 EETGIDTEF 176 (295)
T ss_pred HHhCcchhh
Confidence 999986553
No 92
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=97.93 E-value=2.3e-05 Score=65.38 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=56.1
Q ss_pred eEEEEEEEeCCCeEEEEEEcCCCCCCCCeEE-eccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCC
Q 026577 127 LGNGAVVETSDKKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGV 205 (236)
Q Consensus 127 lgv~~vl~t~dg~vLl~rRs~~~~~~~G~~~-fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl 205 (236)
++.+++|.+.+|++|+.||+..+..|||.|. --.|||-++++ ..++++|-+.+|+||
T Consensus 34 rAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es----------------------~~~A~~rRl~~ELGi 91 (185)
T COG1443 34 RAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGES----------------------NEDAARRRLAYELGI 91 (185)
T ss_pred hhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCc----------------------hHHHHHHHHHHHhCC
Confidence 3567899999999999999988899999996 67899999998 889999999999999
Q ss_pred CCCCC
Q 026577 206 PSESL 210 (236)
Q Consensus 206 ~~~~l 210 (236)
.....
T Consensus 92 e~~~~ 96 (185)
T COG1443 92 EPDQY 96 (185)
T ss_pred CCccc
Confidence 99853
No 93
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=97.92 E-value=3.7e-05 Score=65.37 Aligned_cols=60 Identities=22% Similarity=0.224 Sum_probs=42.7
Q ss_pred CceEEEEEEEeCCC--eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHh
Q 026577 125 SPLGNGAVVETSDK--KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEE 202 (236)
Q Consensus 125 ~~lgv~~vl~t~dg--~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EE 202 (236)
..+++-+++. +|| .++|.++-+. ....-.+++|+|-+|.+|+ +..+|+||++||
T Consensus 74 dgVaIl~il~-~dG~~~ivL~kQfRp-P~Gk~ciElPAGLiD~ge~----------------------~~~aAiREl~EE 129 (225)
T KOG3041|consen 74 DGVAILAILE-SDGKPYIVLVKQFRP-PTGKICIELPAGLIDDGED----------------------FEGAAIRELEEE 129 (225)
T ss_pred CeEEEEEEEe-cCCcEEEEEEEeecC-CCCcEEEEcccccccCCCc----------------------hHHHHHHHHHHH
Confidence 3344444443 577 4777776633 2333355789999999998 999999999999
Q ss_pred hCCCCC
Q 026577 203 IGVPSE 208 (236)
Q Consensus 203 tGl~~~ 208 (236)
||+.-.
T Consensus 130 tGy~gk 135 (225)
T KOG3041|consen 130 TGYKGK 135 (225)
T ss_pred hCccce
Confidence 999843
No 94
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=97.89 E-value=8.7e-07 Score=81.91 Aligned_cols=87 Identities=11% Similarity=0.206 Sum_probs=69.1
Q ss_pred ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhC----CCcccCceEEEeeeEEecCCCCCCcceEEEe
Q 026577 13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQIN----KSLFNGQKFRYGGHIMRGEGGSSVESHVCLH 88 (236)
Q Consensus 13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~----p~lfng~kfrl~~~~~~~~~~~~~~~~~~l~ 88 (236)
+.-.||+|+||+++++|++||.+. .-+++||.++..+.++-+ ..+|+.....+. .++.++-.|||+||+.|.
T Consensus 208 ~kgvpGVG~YTAGAiaSIAf~q~t---GiVDGNVirvlsRalAIhsDcSkgk~~q~~wkLA-~qLVDP~RPGDFNQalME 283 (555)
T KOG2457|consen 208 MKGVPGVGQYTAGAIASIAFNQVT---GIVDGNVIRVLSRALAIHSDCSKGKFFQSSWKLA-AQLVDPSRPGDFNQALME 283 (555)
T ss_pred HhhCCCCCccchhhhhhhhhcCcc---cccccchHHHhHHhHhhcCCcchhhHHHHHHHHH-HHhcCCCCCCcHHHHHHH
Confidence 334699999999999999999933 248999999998777732 235666655554 355677889999999999
Q ss_pred cCCcccceeeccCCChhhhh
Q 026577 89 LGLTDYRTFVGTNLNPLWEK 108 (236)
Q Consensus 89 lg~T~Yr~fv~t~~~p~~~~ 108 (236)
||+| +||+..|.|..
T Consensus 284 LGAt-----~CTpq~P~CS~ 298 (555)
T KOG2457|consen 284 LGAT-----LCTPQKPSCSS 298 (555)
T ss_pred hcCe-----eccCCCCCcCC
Confidence 9999 99999998763
No 95
>PLN02839 nudix hydrolase
Probab=97.81 E-value=4.6e-05 Score=70.62 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=49.3
Q ss_pred EEEEEe-CCCeEEEEEEcCCCCCCCCeEE-eccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 130 GAVVET-SDKKILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 130 ~~vl~t-~dg~vLl~rRs~~~~~~~G~~~-fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
.+.+.. .++++.+.|||..+..+||+|+ +.||.+..+++ ++++++||+.||.||+.
T Consensus 209 NGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGes----------------------p~etliREa~EEAgLp~ 266 (372)
T PLN02839 209 NGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGIS----------------------CGENLVKECEEEAGISK 266 (372)
T ss_pred EEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCC----------------------HHHHHHHHHHHHcCCCH
Confidence 444443 2357999999999999999997 68999999998 99999999999999987
Q ss_pred CC
Q 026577 208 ES 209 (236)
Q Consensus 208 ~~ 209 (236)
..
T Consensus 267 ~l 268 (372)
T PLN02839 267 AI 268 (372)
T ss_pred HH
Confidence 63
No 96
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.54 E-value=0.00021 Score=54.94 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=45.9
Q ss_pred EEEEeCCCeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCC
Q 026577 131 AVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESL 210 (236)
Q Consensus 131 ~vl~t~dg~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l 210 (236)
.++++.+|++||.||..+ +.++|+|+||.--.+..+. .+.+.+.+.+..|+.+...
T Consensus 2 ~~i~~~~~~~Ll~kRp~~-gll~GLwefP~~e~~~~~~-----------------------~~~l~~~~~~~~~~~~~~~ 57 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEK-GLLAGLWEFPLIESDEEDD-----------------------EEELEEWLEEQLGLSIRSV 57 (114)
T ss_dssp EEEEETTSEEEEEE--SS-STTTT-EE--EEE-SSS-C-----------------------HHHHHHHTCCSSS-EEEE-
T ss_pred EEEEEeCCEEEEEECCCC-ChhhcCcccCEeCccCCCC-----------------------HHHHHHHHHHHcCCChhhh
Confidence 467789999999999954 7999999999966653222 2334445556677765433
Q ss_pred ccceeEEeeeeeecc--eeeeeEEEEe
Q 026577 211 VSYSLLIRYQVVVPA--LLLCGYMCTS 235 (236)
Q Consensus 211 ~~~~ll~~~~~~~~~--~~~~~~~~~~ 235 (236)
. .++...+.+++ +.+..|.|.+
T Consensus 58 ~---~~~~v~H~fSH~~~~~~~~~~~~ 81 (114)
T PF14815_consen 58 E---PLGTVKHVFSHRRWTIHVYEVEV 81 (114)
T ss_dssp S----SEEEEEE-SSEEEEEEEEEEEE
T ss_pred e---ecCcEEEEccceEEEEEEEEEEe
Confidence 2 35667888887 5777777764
No 97
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.0076 Score=52.34 Aligned_cols=39 Identities=28% Similarity=0.591 Sum_probs=33.2
Q ss_pred eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 139 KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 139 ~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
+++.+||+.. |.|-+|||.+||+|- +-.+.+||..||.=
T Consensus 140 e~vavkr~d~-----~~WAiPGGmvdpGE~----------------------vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPDN-----GEWAIPGGMVDPGEK----------------------VSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCCC-----CcccCCCCcCCchhh----------------------hhHHHHHHHHHHHH
Confidence 5777888855 899999999999998 77889999998853
No 98
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=95.86 E-value=0.011 Score=47.33 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=31.0
Q ss_pred CCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 153 PGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 153 ~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
-|.|.+|-|....+|. ...+|.||..||+||.+.
T Consensus 35 ~GAWSIPKGey~~gEd----------------------p~~AArREf~EE~Gi~vd 68 (161)
T COG4119 35 DGAWSIPKGEYTGGED----------------------PWLAARREFSEEIGICVD 68 (161)
T ss_pred CCcccccccccCCCcC----------------------HHHHHHHHhhhhhceeec
Confidence 3789999999999988 889999999999999875
No 99
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.54 E-value=0.025 Score=48.50 Aligned_cols=69 Identities=25% Similarity=0.358 Sum_probs=53.3
Q ss_pred EEEEEEEeCCCeEEEEEEcCCCCCCCCeEE-eccccCC--CCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 128 GNGAVVETSDKKILLLQRSNNVGEFPGHFV-FPGGHPE--PQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 128 gv~~vl~t~dg~vLl~rRs~~~~~~~G~~~-fPGG~~E--p~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
+.++++.+++|++||.+||..+-.+||.|. .-.+||= ++|.... + .-++..+|.|-+.-|+|
T Consensus 54 aFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~---d------------~lGVr~AAqRkL~~ELG 118 (225)
T KOG0142|consen 54 AFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEEN---D------------ALGVRRAAQRKLKAELG 118 (225)
T ss_pred eeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccC---c------------hHHHHHHHHHHHHHhhC
Confidence 556799999999999999988889999996 4567765 4433110 0 12388999999999999
Q ss_pred CCCCCCc
Q 026577 205 VPSESLV 211 (236)
Q Consensus 205 l~~~~l~ 211 (236)
|+.+.+.
T Consensus 119 Ip~e~v~ 125 (225)
T KOG0142|consen 119 IPLEEVP 125 (225)
T ss_pred CCccccC
Confidence 9999876
No 100
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=93.92 E-value=0.057 Score=47.76 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=43.1
Q ss_pred eEEEEEEcCCCCCCCCeEE-eccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCC
Q 026577 139 KILLLQRSNNVGEFPGHFV-FPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 139 ~vLl~rRs~~~~~~~G~~~-fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~ 208 (236)
.+.+-|||+.+..|||+|+ ..||.+--+.. +.++++.|..||.+++..
T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~g----------------------I~eT~iKE~~EEAnl~~~ 197 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFG----------------------IKETAIKEAAEEANLPSD 197 (306)
T ss_pred EEEecccCCccccCcchhhhhhccccccCch----------------------HHHHHHHHHHHhcCCchh
Confidence 6888899999999999997 67888888777 999999999999999884
No 101
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=91.78 E-value=0.64 Score=38.82 Aligned_cols=80 Identities=24% Similarity=0.356 Sum_probs=52.4
Q ss_pred ccCCceEEEEEEEeCCCeEEEEEEcCCCCCC--CCeEEe-ccccCCCCCCCCCCCCCCCCCchhhhccchHh-HHHHHHH
Q 026577 122 HTASPLGNGAVVETSDKKILLLQRSNNVGEF--PGHFVF-PGGHPEPQDAGITSHPCGSTDSEFINHKVSQE-MFDSITR 197 (236)
Q Consensus 122 ~~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~--~G~~~f-PGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~-l~~aa~R 197 (236)
...+++.- ++|.+.| +||+-+|-...++. -|++.+ -|||+...+... ...+ +.-.+-|
T Consensus 58 ~~KQ~IpY-vvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~----------------s~~evLk~n~~R 119 (203)
T COG4112 58 TTKQVIPY-VVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGAT----------------SREEVLKGNLER 119 (203)
T ss_pred cccccccE-EEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcc----------------cHHHHHccchHH
Confidence 34565555 4556555 89999988554433 366665 699999877521 1112 3345889
Q ss_pred HHHHhhCCCCCCCccceeEEee
Q 026577 198 EVVEEIGVPSESLVSYSLLIRY 219 (236)
Q Consensus 198 El~EEtGl~~~~l~~~~ll~~~ 219 (236)
|+.||+++...++....++++-
T Consensus 120 EleEEv~vseqd~q~~e~lGlI 141 (203)
T COG4112 120 ELEEEVDVSEQDLQELEFLGLI 141 (203)
T ss_pred HHHHHhCcCHHHhhhheeeeee
Confidence 9999999997776666666653
No 102
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=90.71 E-value=1.5 Score=37.44 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=36.5
Q ss_pred eEEEEEEEeC-CC--eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhh
Q 026577 127 LGNGAVVETS-DK--KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEI 203 (236)
Q Consensus 127 lgv~~vl~t~-dg--~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEt 203 (236)
..|.+|++.. .+ +|||+|...+ .|.+|||.+.++|. -.+..+|.+.+-+
T Consensus 44 rsVe~Vllvh~h~~PHvLLLq~~~~------~fkLPGg~l~~gE~----------------------e~~gLkrkL~~~l 95 (188)
T PF13869_consen 44 RSVEGVLLVHEHGHPHVLLLQIGNT------FFKLPGGRLRPGED----------------------EIEGLKRKLTEKL 95 (188)
T ss_dssp EEEEEEEEEEETTEEEEEEEEETTT------EEE-SEEE--TT------------------------HHHHHHHHHHHHH
T ss_pred eEEEEEEEEecCCCcEEEEEeccCc------cccCCccEeCCCCC----------------------hhHHHHHHHHHHc
Confidence 3555555543 33 6899986532 69999999999998 6889999999999
Q ss_pred CCCCCCC
Q 026577 204 GVPSESL 210 (236)
Q Consensus 204 Gl~~~~l 210 (236)
|..-...
T Consensus 96 ~~~~~~~ 102 (188)
T PF13869_consen 96 SPEDGVD 102 (188)
T ss_dssp B-SSSS-
T ss_pred CCCcCCC
Confidence 9876443
No 103
>PF14443 DBC1: DBC1
Probab=85.67 E-value=1.6 Score=34.83 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=36.6
Q ss_pred eEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCCCCCccc
Q 026577 139 KILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPSESLVSY 213 (236)
Q Consensus 139 ~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~~~l~~~ 213 (236)
++|+++|.+. ....||.-+|.=++.+ ...|. .-+..+|+|=+++-|||+++.+..+
T Consensus 9 kFlv~~k~ke-------~~aiGG~WspsLDG~D----P~~dp--------~~LI~TAiR~~K~~tgiDLS~Ct~W 64 (126)
T PF14443_consen 9 KFLVGKKDKE-------IMAIGGPWSPSLDGGD----PSSDP--------SVLIRTAIRTCKALTGIDLSNCTQW 64 (126)
T ss_pred eeEEeecCce-------EEecCCcCCcccCCCC----CCCCc--------HHHHHHHHHHHHHHhccchhhcCcc
Confidence 5677776642 3446676666632221 11111 1289999999999999999988765
No 104
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=72.85 E-value=0.98 Score=41.57 Aligned_cols=54 Identities=26% Similarity=0.422 Sum_probs=38.9
Q ss_pred EEEEEEeCC-CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhCCCC
Q 026577 129 NGAVVETSD-KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIGVPS 207 (236)
Q Consensus 129 v~~vl~t~d-g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtGl~~ 207 (236)
.++++.+.. -++|+++--+. .-|.||-|+...+|. -.+|+.|||.||||.+.
T Consensus 85 ~ga~ild~~~sr~llv~g~qa-----~sw~fprgK~~kdes----------------------d~~caiReV~eetgfD~ 137 (348)
T KOG2937|consen 85 RGAIILDEKRSRCLLVKGWQA-----SSWSFPRGKISKDES----------------------DSDCAIREVTEETGFDY 137 (348)
T ss_pred chHhhhhhhhhhhheeeceec-----ccccccCccccccch----------------------hhhcchhcccchhhcCH
Confidence 345555543 35565553322 239999999999887 67999999999999987
Q ss_pred CC
Q 026577 208 ES 209 (236)
Q Consensus 208 ~~ 209 (236)
..
T Consensus 138 sk 139 (348)
T KOG2937|consen 138 SK 139 (348)
T ss_pred HH
Confidence 64
No 105
>PRK10702 endonuclease III; Provisional
Probab=66.83 E-value=1.1 Score=38.61 Aligned_cols=85 Identities=9% Similarity=0.027 Sum_probs=50.5
Q ss_pred CCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHHhhCCCcccCceEEEeeeEEecCCCCCCcceEEEecCCccc
Q 026577 15 CPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRVQINKSLFNGQKFRYGGHIMRGEGGSSVESHVCLHLGLTDY 94 (236)
Q Consensus 15 ~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~~~~p~lfng~kfrl~~~~~~~~~~~~~~~~~~l~lg~T~Y 94 (236)
..||+|++++++++.-+|++ |.. .+|.+|.|+-.+.--....-++...-.+ ....+.+...+.+.+.+.+|.+
T Consensus 113 ~lpGVG~ktA~~ill~a~~~-~~~--~VDt~v~Rv~~r~g~~~~~~~~~~~~~l--~~~lp~~~~~~~~~~li~~Gr~-- 185 (211)
T PRK10702 113 ALPGVGRKTANVVLNTAFGW-PTI--AVDTHIFRVCNRTQFAPGKNVEQVEEKL--LKVVPAEFKVDCHHWLILHGRY-- 185 (211)
T ss_pred cCCcccHHHHHHHHHHHcCC-Ccc--cccchHHHHHHHhCCCCCCCHHHHHHHH--HHhCCchHHHHHHHHHHHHhHH--
Confidence 66999999999999999999 643 4899999987754111000000000000 0011111111245566777888
Q ss_pred ceeeccCCChhhhhh
Q 026577 95 RTFVGTNLNPLWEKF 109 (236)
Q Consensus 95 r~fv~t~~~p~~~~~ 109 (236)
+|+..+|.|..|
T Consensus 186 ---~C~~~~P~C~~C 197 (211)
T PRK10702 186 ---TCIARKPRCGSC 197 (211)
T ss_pred ---HcCCCCCCCCCC
Confidence 898888888655
No 106
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=61.14 E-value=31 Score=29.17 Aligned_cols=50 Identities=30% Similarity=0.506 Sum_probs=34.8
Q ss_pred EEEEEEEeCC---CeEEEEEEcCCCCCCCCeEEeccccCCCCCCCCCCCCCCCCCchhhhccchHhHHHHHHHHHHHhhC
Q 026577 128 GNGAVVETSD---KKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINHKVSQEMFDSITREVVEEIG 204 (236)
Q Consensus 128 gv~~vl~t~d---g~vLl~rRs~~~~~~~G~~~fPGG~~Ep~e~~~~~~~~~~~~~~~~~~~~~~~l~~aa~REl~EEtG 204 (236)
.|.++++..+ -+|||.+-.. -.+-+|||.++|+|+ -.+...|-+-|-+|
T Consensus 71 svegvlivheH~lPHvLLLQig~------tf~KLPGG~L~pGE~----------------------e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 71 SVEGVLIVHEHNLPHVLLLQIGN------TFFKLPGGRLRPGED----------------------EADGLKRLLTESLG 122 (221)
T ss_pred eeeeeEEEeecCCCeEEEEeeCC------EEEecCCCccCCCcc----------------------hhHHHHHHHHHHhc
Confidence 4555555433 4788887553 357799999999998 44667777778887
Q ss_pred C
Q 026577 205 V 205 (236)
Q Consensus 205 l 205 (236)
-
T Consensus 123 r 123 (221)
T KOG1689|consen 123 R 123 (221)
T ss_pred c
Confidence 3
No 107
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=55.99 E-value=2.2 Score=37.18 Aligned_cols=37 Identities=5% Similarity=-0.018 Sum_probs=31.1
Q ss_pred ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHH
Q 026577 13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDS 52 (236)
Q Consensus 13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~ 52 (236)
|...+|||+.|+++++.-+|+| |... ++..+.|+..+
T Consensus 123 Ll~l~GIG~kTAd~iLlya~~r-p~fv--VDty~~Rv~~R 159 (218)
T PRK13913 123 LLDQKGIGKESADAILCYVCAK-EVMV--VDKYSYLFLKK 159 (218)
T ss_pred HHcCCCccHHHHHHHHHHHcCC-Cccc--cchhHHHHHHH
Confidence 3467999999999999999999 6543 89999988774
No 108
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=46.82 E-value=3.5 Score=34.70 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=30.4
Q ss_pred ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHH
Q 026577 13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDS 52 (236)
Q Consensus 13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~ 52 (236)
|...+|||+.++++++..+|++ |.+ .++.+|.++-.+
T Consensus 108 L~~l~GIG~ktA~~ill~~~~~-~~~--~vD~~v~Ri~~r 144 (191)
T TIGR01083 108 LVKLPGVGRKTANVVLNVAFGI-PAI--AVDTHVFRVSNR 144 (191)
T ss_pred HHhCCCCcHHHHHHHHHHHcCC-Ccc--ccchhHHHHHHH
Confidence 3466999999999999999998 643 388999888754
No 109
>smart00478 ENDO3c endonuclease III. includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=38.01 E-value=7.5 Score=30.89 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=29.4
Q ss_pred CCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHH
Q 026577 15 CPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDS 52 (236)
Q Consensus 15 ~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~ 52 (236)
..+|||+.++++.+.-+|++ +.|. +|-+|.++..+
T Consensus 76 ~l~GIG~~tA~~~l~~~~~~-~~~~--~D~~v~r~~~r 110 (149)
T smart00478 76 KLPGVGRKTANAVLSFALGK-PFIP--VDTHVLRIAKR 110 (149)
T ss_pred cCCCCcHHHHHHHHHHHCCC-CCCc--cchHHHHHHHH
Confidence 57999999999999999999 7655 78888887664
No 110
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=37.49 E-value=7.3 Score=33.82 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=28.6
Q ss_pred ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHH
Q 026577 13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEI 49 (236)
Q Consensus 13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~ 49 (236)
|..+||+|+-|+.|+++.+|+. |. . ++|-+|.|+
T Consensus 111 L~~LPGVGrKTAnvVL~~a~g~-p~-i-~VDTHV~Rv 144 (211)
T COG0177 111 LLSLPGVGRKTANVVLSFAFGI-PA-I-AVDTHVHRV 144 (211)
T ss_pred HHhCCCcchHHHHHHHHhhcCC-Cc-c-cccchHHHH
Confidence 3467999999999999999999 62 3 488999877
No 111
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=30.37 E-value=77 Score=29.24 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 026577 191 MFDSITREVVEEIGVPSES 209 (236)
Q Consensus 191 l~~aa~REl~EEtGl~~~~ 209 (236)
+.+-|..|+.||.|..+..
T Consensus 94 ~~eia~eev~eecgy~v~~ 112 (405)
T KOG4432|consen 94 PREIASEEVAEECGYRVDP 112 (405)
T ss_pred HHHHhHHHHHHHhCCcCCh
Confidence 7788999999999998763
No 112
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=29.70 E-value=48 Score=21.22 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhh
Q 026577 191 MFDSITREVVEEI 203 (236)
Q Consensus 191 l~~aa~REl~EEt 203 (236)
+-..++||+-||+
T Consensus 24 p~~~alkELIeEL 36 (43)
T PF03487_consen 24 PSSTALKELIEEL 36 (43)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 5677999999985
No 113
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg). All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily.
Probab=28.72 E-value=12 Score=34.03 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=31.3
Q ss_pred ecCCCCCCCceeEEEeccCCCCCCCCCCchhhHHHHHHHHHH
Q 026577 13 LSCPHGFSPSEVSVVFDESYDRVPHPDNNLENSISEIWDSRV 54 (236)
Q Consensus 13 ~~~~~g~~~~~v~v~~s~~f~r~p~p~~~~e~~I~~~W~~~~ 54 (236)
|...+|||+.++++++..+|++ |...+ ++-+|.++.++..
T Consensus 222 L~~l~GIG~~tAd~vll~~l~~-~d~~P-vD~~v~r~~~r~y 261 (310)
T TIGR00588 222 LCELPGVGPKVADCICLMGLDK-PQAVP-VDVHVWRIANRDY 261 (310)
T ss_pred HHhCCCccHHHHHHHHHHhCCC-CCcee-ecHHHHHHHHHHh
Confidence 3457999999999999999999 54343 5788888877553
No 114
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=27.83 E-value=1.8e+02 Score=26.98 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=42.9
Q ss_pred CCceEEEEEEEe-CCCeEEEEEEcCCCCCCCCeEEe-ccccCCCCC-CCCC--------------CCCCCCCCchhhhcc
Q 026577 124 ASPLGNGAVVET-SDKKILLLQRSNNVGEFPGHFVF-PGGHPEPQD-AGIT--------------SHPCGSTDSEFINHK 186 (236)
Q Consensus 124 ~~~lgv~~vl~t-~dg~vLl~rRs~~~~~~~G~~~f-PGG~~Ep~e-~~~~--------------~~~~~~~~~~~~~~~ 186 (236)
..+-.|.+++++ +..+++|+|+-+. +.+.|...| --|...|-| .++. +-++.+.+
T Consensus 227 k~hdSvt~iL~n~srk~LVlvqqfRp-aVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s------- 298 (405)
T KOG4432|consen 227 KCHDSVTCILVNMSRKELVLVQQFRP-AVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFS------- 298 (405)
T ss_pred hCCCceEEEEEeccchheehhhhcCc-ceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcc-------
Confidence 344456677775 4567777776644 577787776 234444433 2111 11122111
Q ss_pred chHhHHHHHHHHHHHhhCCCCC
Q 026577 187 VSQEMFDSITREVVEEIGVPSE 208 (236)
Q Consensus 187 ~~~~l~~aa~REl~EEtGl~~~ 208 (236)
..+-|.||..||.|.++.
T Consensus 299 ----~~e~a~~e~veecGYdlp 316 (405)
T KOG4432|consen 299 ----DPEKAARESVEECGYDLP 316 (405)
T ss_pred ----cHHHHHHHHHHHhCCCCC
Confidence 457789999999999886
No 115
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=25.15 E-value=4.2 Score=24.17 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=11.6
Q ss_pred ecCCCCCCCceeEEEec
Q 026577 13 LSCPHGFSPSEVSVVFD 29 (236)
Q Consensus 13 ~~~~~g~~~~~v~v~~s 29 (236)
+...||+|+++++++++
T Consensus 13 L~~lpGIG~~tA~~I~~ 29 (30)
T PF00633_consen 13 LMKLPGIGPKTANAILS 29 (30)
T ss_dssp HHTSTT-SHHHHHHHHH
T ss_pred HHhCCCcCHHHHHHHHh
Confidence 34679999999876543
No 116
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=21.04 E-value=1.7e+02 Score=23.34 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=17.9
Q ss_pred ccCCceEEEEEEEeCCCeEEEEEEcCCCCCCCCe
Q 026577 122 HTASPLGNGAVVETSDKKILLLQRSNNVGEFPGH 155 (236)
Q Consensus 122 ~~~~~lgv~~vl~t~dg~vLl~rRs~~~~~~~G~ 155 (236)
|...+.|| .|.+.||+++-++......++|.+
T Consensus 51 YS~~~sGv--AL~~~~G~i~~G~y~EnAAfNPSl 82 (124)
T PF08211_consen 51 YSKCPSGV--ALLTSDGRIYTGRYAENAAFNPSL 82 (124)
T ss_dssp TT---EEE--EEEETTS-EEEEE-B--TTSTT-B
T ss_pred ccCCceeE--EEEeCCCCEEEEEEEeecccCCCh
Confidence 45555665 467799999999988777676653
No 117
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=20.04 E-value=1.6e+02 Score=26.95 Aligned_cols=12 Identities=50% Similarity=0.584 Sum_probs=9.1
Q ss_pred CeEEeccccCCC
Q 026577 154 GHFVFPGGHPEP 165 (236)
Q Consensus 154 G~~~fPGG~~Ep 165 (236)
|+=++||||.|-
T Consensus 202 G~~DapgGH~Ei 213 (392)
T KOG1469|consen 202 GYTDAPGGHFEI 213 (392)
T ss_pred ccccCCCCcceE
Confidence 666788888874
Done!