BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026580
(236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EH5|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Palmitate
pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
pdb|1EXW|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Hexadecylsulfonyl Fluoride
Length = 279
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 27/206 (13%)
Query: 3 ELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC---------- 52
+L +GYN +G SQG R V + C PP+ N +S+GG H G +P C
Sbjct: 77 KLQQGYNAMGFSQGGQFLRAVAQRCPS-PPMVNLISVGGQHQGVFGLPRCPGESSHICDF 135
Query: 53 --------------GDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFS 98
+ L + Y P Y FL +N E N +YK+
Sbjct: 136 IRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQE--RGVNESYKKNLM 193
Query: 99 SLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRV 158
+L+ V++ F +D ++ P ++ WFG+Y G +P Q++ LYT+D +GLK +D AG++
Sbjct: 194 ALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQDRLGLKAMDKAGQL 253
Query: 159 HFISVAGGHLKISKADMKKHIIPYLK 184
F+++ G HL++S+ HIIP+L+
Sbjct: 254 VFLALEGDHLQLSEEWFYAHIIPFLE 279
>pdb|3GRO|A Chain A, Human Palmitoyl-Protein Thioesterase 1
pdb|3GRO|B Chain B, Human Palmitoyl-Protein Thioesterase 1
Length = 298
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 27/205 (13%)
Query: 3 ELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC---------- 52
+L +GYN G SQG R V + C PP N +S+GG H G +P C
Sbjct: 84 KLQQGYNAXGFSQGGQFLRAVAQRCPS-PPXINLISVGGQHQGVFGLPRCPGESSHICDF 142
Query: 53 --------------GDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFS 98
+ L + Y P Y FL +N E N +YK+
Sbjct: 143 IRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQE--RGINESYKKNLX 200
Query: 99 SLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRV 158
+L+ V + F +D ++ P ++ WFG+Y G +P Q+T LYT+D +GLK D+AG++
Sbjct: 201 ALKKFVXVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEXDNAGQL 260
Query: 159 HFISVAGGHLKISKADMKKHIIPYL 183
F++ G HL++S+ HIIP+L
Sbjct: 261 VFLATEGDHLQLSEEWFYAHIIPFL 285
>pdb|1PJA|A Chain A, The Crystal Structure Of Palmitoyl Protein Thioesterase-2
Reveals The Basis For Divergent Substrate Specificities
Of The Two Lysosomal Thioesterases (Ppt1 And Ppt2)
Length = 302
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 24/186 (12%)
Query: 1 MKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAG--------------- 45
M + +G +++ SQG L+ R ++ + V +F+SL P G
Sbjct: 98 MAKAPQGVHLICYSQGGLVCRALLSVMDDHN-VDSFISLSSPQMGQYGDTDYLKWLFPTS 156
Query: 46 --TASVPLC----GDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFSS 99
+ +C G + Y P+ YL FL +N E + +++ F
Sbjct: 157 MRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLR 216
Query: 100 LQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKTKLYTEDWIGLKTLDDAGRVH 159
+ +LVLI DD V+ P ++++FG+Y A VL ++ +Y D GLKTL G +
Sbjct: 217 VGHLVLIGGPDDGVITPWQSSFFGFY--DANETVLEMEEQLVYLRDSFGLKTLLARGAIV 274
Query: 160 FISVAG 165
+AG
Sbjct: 275 RCPMAG 280
>pdb|2H5Q|A Chain A, Crystal Structure Of Mcherry
Length = 234
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS----GYLKFPNDIPKYLE 73
EG K V+ GGP +P D L+P Y+K P DIP YL+
Sbjct: 44 EGTQTAKLKVTKGGP------LPFAWDILSPQFXSKAYVKHPADIPDYLK 87
>pdb|2H5P|A Chain A, Crystal Structure Of Mstrawberry At Ph 9.5
pdb|2H5R|A Chain A, Crystal Structure Of Mstrawberry At Ph 10.5
Length = 234
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS----GYLKFPNDIPKYLE 73
EG K V+ GGP +P D L P+ Y+K P DIP YL+
Sbjct: 44 EGTQTAKLKVTKGGP------LPFAWDILTPNFXSKAYVKHPADIPDYLK 87
>pdb|3GF8|A Chain A, Crystal Structure Of Putative Polysaccharide Binding
Proteins (Duf1812) (Np_809975.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 2.20 A Resolution
Length = 296
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 25/140 (17%)
Query: 98 SSLQNLVLIMFKDDKVLIPK--ETAWFGYYPDGAFSPVLPPQKT----------KLYTED 145
S+L +L L + ++ ++I K ET W+G + F + +T + +
Sbjct: 99 STLTDLKLKLKREASLIINKRXETLWYGEVINVNFDGTVHQTETINLIRDTKIVRFGFQS 158
Query: 146 WIGLKTLDDAGRVHFISVAGGHLKISKADMKKHII---PYLKDQA----------SVRVI 192
+ G TLD + I + GHL + + ++ PY +Q + R+
Sbjct: 159 YTGSWTLDXNDYDYEIIESNGHLGHDNSLLDDDVLSFRPYYXEQKDPATAYVDXNTXRLX 218
Query: 193 ESRKTKGPNEEEGSTELVFD 212
E RKT+ E+ S + VFD
Sbjct: 219 EDRKTRLVLTEKASGKRVFD 238
>pdb|2QLI|A Chain A, Mplum E16q Mutant
pdb|2QLI|B Chain B, Mplum E16q Mutant
Length = 224
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS----GYLKFPNDIPKYLE 73
EG + V+ GGP +P D L+P Y+K P DIP YL+
Sbjct: 40 EGTQTARLKVTKGGP------LPFAWDILSPQIXSKAYVKHPADIPDYLK 83
>pdb|2QLG|A Chain A, Mplum
pdb|2QLG|B Chain B, Mplum
Length = 224
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS----GYLKFPNDIPKYLE 73
EG + V+ GGP +P D L+P Y+K P DIP YL+
Sbjct: 40 EGTQTARLKVTKGGP------LPFAWDILSPQIXSKAYVKHPADIPDYLK 83
>pdb|3NEZ|A Chain A, Mrojoa
pdb|3NEZ|D Chain D, Mrojoa
Length = 217
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS-----GYLKFPNDIPKYLE 73
EG K V+ GGP +P D L+P Y+K P DIP YL+
Sbjct: 35 EGTQTAKLKVTKGGP------LPFAWDILSPQFXXSKAYVKHPADIPDYLK 79
>pdb|2QLH|A Chain A, Mplum I65l Mutant
pdb|2QLH|B Chain B, Mplum I65l Mutant
Length = 224
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS----GYLKFPNDIPKYLE 73
EG + V+ GGP +P D L+P Y+K P DIP YL+
Sbjct: 40 EGTQTARLKVTKGGP------LPFAWDILSPQLXSKAYVKHPADIPDYLK 83
>pdb|3NEZ|B Chain B, Mrojoa
pdb|3NEZ|C Chain C, Mrojoa
Length = 216
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS-----GYLKFPNDIPKYLE 73
EG K V+ GGP +P D L+P Y+K P DIP YL+
Sbjct: 34 EGTQTAKLKVTKGGP------LPFAWDILSPQFXXSKAYVKHPADIPDYLK 78
>pdb|3NF0|A Chain A, Mplum-Ttn
Length = 232
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS----GYLKFPNDIPKYLE 73
EG + V+ GGP +P D L+P Y+K P DIP YL+
Sbjct: 48 EGTQTARLKVTKGGP------LPFAWDILSPQIXSKAYVKHPADIPDYLK 91
>pdb|3NED|A Chain A, Mrouge
Length = 231
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 12/52 (23%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS------GYLKFPNDIPKYLE 73
EG K V+ GGP +P D L+P Y+K P DIP YL+
Sbjct: 39 EGTQTAKLKVTKGGP------LPFAWDILSPQFXXXSKAYVKHPADIPDYLK 84
>pdb|2VAD|A Chain A, Monomeric Red Fluorescent Protein, Dsred.m1
Length = 223
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 20 GRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS----GYLKFPNDIPKYLE 73
G G + EG K V+ GGP +P D L+P Y+K P DIP Y++
Sbjct: 31 GEGEGKPYEGTQTAKLQVTKGGP------LPFAWDILSPQFXSKAYVKHPADIPDYMK 82
>pdb|4H3N|A Chain A, Mplumayc
Length = 232
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS----GYLKFPNDIPKYLE 73
EG + V+ GGP +P D L+P Y+K P DIP YL+
Sbjct: 48 EGTQTARLKVTKGGP------LPFAWDILSPQIXSKAYVKHPADIPDYLK 91
>pdb|4H3M|A Chain A, Mplumayc-e16a
pdb|4H3M|B Chain B, Mplumayc-e16a
Length = 232
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS----GYLKFPNDIPKYLE 73
EG + V+ GGP +P D L+P Y+K P DIP YL+
Sbjct: 48 EGTQTARLKVTKGGP------LPFAWDILSPQIXSKAYVKHPADIPDYLK 91
>pdb|4H3L|A Chain A, Mplum-e16p
pdb|4H3L|B Chain B, Mplum-e16p
Length = 232
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS----GYLKFPNDIPKYLE 73
EG + V+ GGP +P D L+P Y+K P DIP YL+
Sbjct: 48 EGTQTARLKVTKGGP------LPFAWDILSPQIXSKAYVKHPADIPDYLK 91
>pdb|2H8Q|A Chain A, Crystal Structure Of A Redshifted Mutant (K83m) Of The
Red Fluorescent Protein Drfp583DSRED
pdb|2H8Q|B Chain B, Crystal Structure Of A Redshifted Mutant (K83m) Of The
Red Fluorescent Protein Drfp583DSRED
pdb|2H8Q|C Chain C, Crystal Structure Of A Redshifted Mutant (K83m) Of The
Red Fluorescent Protein Drfp583DSRED
pdb|2H8Q|D Chain D, Crystal Structure Of A Redshifted Mutant (K83m) Of The
Red Fluorescent Protein Drfp583DSRED
Length = 217
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPSG----YLKFPNDIPKYLE 73
EG VK V+ GGP +P D L+P Y+K P DIP Y++
Sbjct: 33 EGHNTVKLKVTKGGP------LPFAWDILSPQFXSKVYVKHPADIPDYMK 76
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 106 IMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKT---KLYTEDWIGLKTLDDAGRVHFIS 162
++FKD +VL+ K + +P G P P++T +++ E + + LD G +H+
Sbjct: 10 VLFKDGEVLLIKTPSNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWY 69
Query: 163 VAGGH 167
G
Sbjct: 70 TLKGE 74
>pdb|3VK1|A Chain A, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
Length = 238
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPSG----YLKFPNDIPKYLEK 74
EG VK V+ GGP +P D L+P + K+P DIP Y+++
Sbjct: 54 EGEQTVKLTVTKGGP------LPFAWDILSPQCXSIPFTKYPEDIPDYVKQ 98
>pdb|3VIC|A Chain A, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|B Chain B, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|C Chain C, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|D Chain D, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|E Chain E, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|F Chain F, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|G Chain G, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
pdb|3VIC|H Chain H, Green-Fluorescent Variant Of The Non-Fluorescent
Chromoprotein Rtms5
Length = 238
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPSG----YLKFPNDIPKYLEK 74
EG VK V+ GGP +P D L+P + K+P DIP Y+++
Sbjct: 54 EGEQTVKLTVTKGGP------LPFAWDILSPQCXSIPFTKYPEDIPDYVKQ 98
>pdb|2P4M|A Chain A, High Ph Structure Of Rtms5 H146s Variant
pdb|2P4M|B Chain B, High Ph Structure Of Rtms5 H146s Variant
pdb|2P4M|C Chain C, High Ph Structure Of Rtms5 H146s Variant
pdb|2P4M|D Chain D, High Ph Structure Of Rtms5 H146s Variant
pdb|2P4M|E Chain E, High Ph Structure Of Rtms5 H146s Variant
pdb|2P4M|F Chain F, High Ph Structure Of Rtms5 H146s Variant
pdb|2P4M|G Chain G, High Ph Structure Of Rtms5 H146s Variant
pdb|2P4M|H Chain H, High Ph Structure Of Rtms5 H146s Variant
Length = 219
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPSG----YLKFPNDIPKYLEK 74
EG VK V+ GGP +P D L+P + K+P DIP Y+++
Sbjct: 35 EGEQTVKLTVTKGGP------LPFAWDILSPQCXSIPFTKYPEDIPDYVKQ 79
>pdb|3KCS|A Chain A, Crystal Structure Of Pamcherry1 In The Dark State
pdb|3KCT|A Chain A, Crystal Structure Of Pamcherry1 In The Photoactivated
State
Length = 234
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 20 GRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLCGDHLAP----SGYLKFPNDIPKYLE 73
G G EG K V+ GGP +P D L+P + Y+K P DIP Y +
Sbjct: 36 GEGEGRPYEGTQTAKLKVTKGGP------LPFTWDILSPQFXSNAYVKHPADIPDYFK 87
>pdb|2P0I|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
Length = 456
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 32 PVKNFVS---LGGPHAGTASVPLCGDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDK 88
P K +++ L P G P L PS YL +IP+ L K + +NE PDK
Sbjct: 370 PTKGYLTTADLDKPGFGLTINPAARAKLIPSDYLFKVPEIPQNLSTGKEIK--SNEQPDK 427
Query: 89 RNSTYKECFSSLQNLV 104
N T + +++L
Sbjct: 428 PNGTLDSLAAKVESLT 443
>pdb|3IR8|A Chain A, Red Fluorescent Protein Mkeima At Ph 7.0
pdb|3IR8|B Chain B, Red Fluorescent Protein Mkeima At Ph 7.0
Length = 221
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPS----GYLKFPNDIPKYLEK 74
EG VK V+ GGP +P D L+P + K+P DIP Y ++
Sbjct: 37 EGEQTVKLTVTKGGP------LPFAWDILSPQLXSIPFTKYPEDIPDYFKQ 81
>pdb|1MOV|A Chain A, Crystal Structure Of Coral Protein Mutant
Length = 219
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPSG----YLKFPNDIPKYLEK 74
EG VK V+ GGP +P D L+P + K+P DIP Y+++
Sbjct: 35 EGEQTVKLTVTKGGP------LPFAWDILSPQCXSIPFTKYPEDIPDYVKQ 79
>pdb|2ARL|A Chain A, The 2.0 Angstroms Crystal Structure Of A Pocilloporin At
Ph 3.5: The Structural Basis For The Linkage Between
Color Transition And Halide Binding
Length = 219
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 28 EGGPPVKNFVSLGGPHAGTASVPLCGDHLAPSG----YLKFPNDIPKYLEK 74
EG VK V+ GGP +P D L+P + K+P DIP Y+++
Sbjct: 35 EGEQTVKLTVTKGGP------LPFAWDILSPQCXSIPFTKYPEDIPDYVKQ 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,616,046
Number of Sequences: 62578
Number of extensions: 341679
Number of successful extensions: 758
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 36
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)