Query 026581
Match_columns 236
No_of_seqs 197 out of 1960
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:53:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 7.5E-50 1.6E-54 338.4 24.6 222 2-226 1-224 (224)
2 PF12481 DUF3700: Aluminium in 100.0 6.6E-43 1.4E-47 291.5 20.6 224 2-226 1-228 (228)
3 PLN02549 asparagine synthase ( 100.0 6E-40 1.3E-44 314.2 21.6 189 1-208 1-196 (578)
4 PRK09431 asnB asparagine synth 100.0 1.3E-39 2.7E-44 311.1 21.7 188 1-207 1-196 (554)
5 PTZ00077 asparagine synthetase 100.0 3.5E-39 7.7E-44 309.4 21.0 189 1-208 1-206 (586)
6 PRK07631 amidophosphoribosyltr 100.0 1.2E-37 2.6E-42 291.4 21.9 208 1-226 11-267 (475)
7 PRK08525 amidophosphoribosyltr 100.0 2.6E-37 5.6E-42 288.3 23.0 208 1-225 1-258 (445)
8 COG0367 AsnB Asparagine syntha 100.0 7.7E-38 1.7E-42 298.0 19.4 188 1-209 1-203 (542)
9 PRK07272 amidophosphoribosyltr 100.0 8.5E-37 1.9E-41 286.2 21.9 209 1-226 11-269 (484)
10 PRK06781 amidophosphoribosyltr 100.0 3.5E-36 7.6E-41 281.7 23.4 208 1-226 11-267 (471)
11 TIGR03104 trio_amidotrans aspa 100.0 2.1E-36 4.6E-41 291.2 21.6 186 1-206 1-226 (589)
12 PRK06388 amidophosphoribosyltr 100.0 3.5E-36 7.6E-41 281.7 22.2 207 1-225 19-274 (474)
13 PRK07349 amidophosphoribosyltr 100.0 7.1E-36 1.5E-40 280.8 22.8 209 1-225 33-295 (500)
14 PRK07847 amidophosphoribosyltr 100.0 5.1E-36 1.1E-40 282.3 21.7 209 1-226 23-286 (510)
15 cd00712 AsnB Glutamine amidotr 100.0 1.4E-35 3.1E-40 253.0 22.2 168 27-204 16-220 (220)
16 PRK08341 amidophosphoribosyltr 100.0 1.3E-35 2.9E-40 275.8 22.1 202 1-224 4-253 (442)
17 PRK09123 amidophosphoribosyltr 100.0 1.6E-35 3.4E-40 278.0 22.6 207 1-225 21-278 (479)
18 PRK05793 amidophosphoribosyltr 100.0 4E-35 8.6E-40 275.1 22.4 209 1-225 14-271 (469)
19 TIGR03108 eps_aminotran_1 exos 100.0 2.2E-35 4.8E-40 286.2 20.9 188 1-206 1-227 (628)
20 TIGR01536 asn_synth_AEB aspara 100.0 2.4E-34 5.2E-39 270.2 22.2 168 27-204 15-222 (467)
21 PLN02440 amidophosphoribosyltr 100.0 5.5E-34 1.2E-38 268.0 23.2 207 1-224 1-257 (479)
22 PRK09246 amidophosphoribosyltr 100.0 5.4E-34 1.2E-38 269.4 20.6 209 1-225 1-272 (501)
23 cd00715 GPATase_N Glutamine am 100.0 2.8E-33 6.1E-38 243.7 22.6 189 28-220 14-252 (252)
24 TIGR01134 purF amidophosphorib 100.0 2.3E-33 5E-38 261.6 23.3 193 28-225 15-256 (442)
25 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 3.6E-34 7.8E-39 238.1 15.9 171 1-190 1-179 (181)
26 KOG0571 Asparagine synthase (g 100.0 1.9E-34 4.2E-39 259.8 11.1 190 1-209 1-197 (543)
27 COG0034 PurF Glutamine phospho 100.0 1.3E-31 2.8E-36 244.3 20.1 210 1-225 4-266 (470)
28 cd00714 GFAT Glutamine amidotr 100.0 6.7E-31 1.5E-35 223.9 18.1 159 28-193 14-214 (215)
29 PRK00331 glucosamine--fructose 100.0 4E-30 8.7E-35 248.5 21.9 183 1-203 1-225 (604)
30 TIGR01135 glmS glucosamine--fr 100.0 5.2E-29 1.1E-33 240.9 20.2 169 28-203 14-224 (607)
31 cd01909 betaLS_CarA_N Glutamin 100.0 7.2E-29 1.6E-33 208.6 18.0 121 73-205 49-199 (199)
32 cd01907 GlxB Glutamine amidotr 100.0 8.3E-29 1.8E-33 215.4 18.1 160 27-193 16-248 (249)
33 KOG0572 Glutamine phosphoribos 100.0 1.4E-28 3.1E-33 219.1 17.7 214 1-227 1-276 (474)
34 cd00352 Gn_AT_II Glutamine ami 100.0 6E-28 1.3E-32 203.9 18.6 160 31-192 21-220 (220)
35 PTZ00295 glucosamine-fructose- 100.0 3.9E-28 8.4E-33 236.1 19.8 183 1-203 24-255 (640)
36 PF13537 GATase_7: Glutamine a 99.9 1.1E-26 2.4E-31 181.9 11.0 107 62-177 9-125 (125)
37 PLN02981 glucosamine:fructose- 99.9 9.8E-25 2.1E-29 213.3 19.6 190 1-203 1-277 (680)
38 PTZ00394 glucosamine-fructose- 99.9 4.6E-24 9.9E-29 208.1 19.6 145 53-203 99-280 (670)
39 PF13522 GATase_6: Glutamine a 99.9 4.4E-24 9.6E-29 169.1 13.5 120 42-171 1-133 (133)
40 COG0449 GlmS Glucosamine 6-pho 99.9 5.9E-21 1.3E-25 181.2 16.3 181 1-203 1-221 (597)
41 KOG0573 Asparagine synthase [A 99.7 1.1E-16 2.4E-21 145.9 13.5 163 1-190 1-172 (520)
42 cd00713 GltS Glutamine amidotr 99.7 7.1E-16 1.5E-20 142.0 15.5 136 52-198 202-396 (413)
43 cd01908 YafJ Glutamine amidotr 99.7 1.6E-15 3.4E-20 132.5 12.9 135 52-197 81-257 (257)
44 TIGR03442 conserved hypothetic 99.6 4.3E-15 9.3E-20 129.5 13.3 134 53-201 84-248 (251)
45 KOG1268 Glucosamine 6-phosphat 99.5 7.2E-13 1.6E-17 123.1 13.6 182 1-198 1-278 (670)
46 PF00310 GATase_2: Glutamine a 99.4 1.1E-12 2.3E-17 119.9 10.9 114 49-172 193-361 (361)
47 PRK11750 gltB glutamate syntha 99.1 1.9E-09 4.2E-14 111.3 14.6 72 124-197 332-405 (1485)
48 PF13230 GATase_4: Glutamine a 98.9 2.4E-08 5.1E-13 88.2 11.7 146 53-205 73-259 (271)
49 PF09147 DUF1933: Domain of un 98.0 0.00035 7.6E-09 57.5 13.9 110 74-195 47-187 (201)
50 COG0067 GltB Glutamate synthas 97.7 0.00025 5.5E-09 64.9 9.1 134 51-199 202-363 (371)
51 COG0121 Predicted glutamine am 97.5 0.0018 3.8E-08 56.7 11.7 51 53-103 72-131 (252)
52 KOG0399 Glutamate synthase [Am 89.2 1.8 3.9E-05 45.6 8.3 68 126-195 408-477 (2142)
53 COG0067 GltB Glutamate synthas 74.2 6.3 0.00014 36.5 5.1 49 123-173 322-370 (371)
54 PF10736 DUF2527: Protein of u 59.1 2.9 6.3E-05 25.2 -0.1 9 1-9 1-9 (38)
55 PF04566 RNA_pol_Rpb2_4: RNA p 50.6 24 0.00052 24.1 3.3 27 132-159 33-61 (63)
56 PF06977 SdiA-regulated: SdiA- 44.6 2.1E+02 0.0046 24.9 10.2 97 132-232 120-243 (248)
57 PF08973 TM1506: Domain of unk 34.2 17 0.00037 28.8 0.6 26 129-157 10-35 (134)
58 TIGR03823 FliZ flagellar regul 28.3 39 0.00084 27.5 1.7 19 74-92 33-51 (168)
59 COG4911 Uncharacterized conser 28.1 64 0.0014 24.6 2.8 25 120-144 73-97 (123)
60 PRK11582 flagella biosynthesis 27.9 40 0.00087 27.5 1.7 19 74-92 33-51 (169)
61 PF12594 DUF3764: Protein of u 25.4 48 0.001 24.3 1.6 20 145-164 27-46 (86)
62 COG4315 Uncharacterized protei 24.6 72 0.0016 24.9 2.5 32 125-161 86-117 (138)
63 COG3564 Uncharacterized protei 23.3 1.4E+02 0.0031 22.4 3.8 38 165-203 65-104 (116)
64 PF07433 DUF1513: Protein of u 20.7 4.2E+02 0.0092 23.9 7.0 76 124-202 21-123 (305)
65 COG4256 HemP Hemin uptake prot 20.7 55 0.0012 22.2 1.1 22 66-87 30-51 (63)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=7.5e-50 Score=338.36 Aligned_cols=222 Identities=64% Similarity=1.098 Sum_probs=195.7
Q ss_pred eeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEcCcEEEEEeeCCCCCCcceEEeeCCcEEEEEe
Q 026581 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE 81 (236)
Q Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~la~~~~~~~~~~QP~~~~~~~~~lv~n 81 (236)
++||.+.++++||++++|.+... +..-.++++.+....|+...+.+++.+.||+.+.+++.-.|-+++.++++++++|
T Consensus 1 laif~~~~~~~p~el~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn 78 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ 78 (224)
T ss_pred CcccccccCCCChHHcCCCcccc--CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence 58999999999999999987654 3333578888888999999999999999999876666667777877888999999
Q ss_pred eEEcchhhHHHHhCCCCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEe
Q 026581 82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGIT 161 (236)
Q Consensus 82 G~I~N~~~L~~~lg~~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~ 161 (236)
|+|||+.+|+++|+...+.+|+++++++|++|++.|+.+..+++++|+|+|||+|||.+++++++|||++|++||||+..
T Consensus 79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~ 158 (224)
T cd01910 79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIA 158 (224)
T ss_pred eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEe
Confidence 99999999999998744555555568999999767755556899999999999999999999999999999999999987
Q ss_pred cCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcEEEEeCCCCCCcccCCCcce--eeCceeEE
Q 026581 162 ADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEE--IWGATFKV 226 (236)
Q Consensus 162 ~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~~~~~~~~~r~ds~--i~g~~~~~ 226 (236)
.+|.++||||+++|...|.+.+.+||||||+.. +|++++|++|.|+.+++||.||+ |||++|||
T Consensus 159 ~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s-~ggl~~~~~p~~~~~~vp~~~s~g~~cg~~f~v 224 (224)
T cd01910 159 ADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS-EGGLRSFEHPMNKLKAVPRVDSEGEMCGATFKV 224 (224)
T ss_pred CCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC-CCCEEEeeCCCchhhcCCcccCcccEecceeeC
Confidence 678999999999999999878999999999987 78899999999998899999998 99999997
No 2
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=6.6e-43 Score=291.47 Aligned_cols=224 Identities=55% Similarity=0.988 Sum_probs=209.4
Q ss_pred eeeeccCccCCchhhccCCCCCCC--ccchHHHHHHHhHhcCCCCcceEEcCcEEEEEeeCCCCCCcceEEeeCCcEEEE
Q 026581 2 LGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL 79 (236)
Q Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~m~~~l~~RGpd~~~~~~~~~~~la~~~~~~~~~~QP~~~~~~~~~lv 79 (236)
++||.+.++++||+++||++..+. +++...++++.+....|+...+.+++.+.||+++.+++...|..+..-+++.++
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi 80 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI 80 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence 689999999999999999976443 789999999999999999999999999999999977766666666666789999
Q ss_pred EeeEEcchhhHHHHhCCCCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEE
Q 026581 80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWG 159 (236)
Q Consensus 80 ~nG~I~N~~~L~~~lg~~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~ 159 (236)
|-|.|.|...|+++||++++.+|+++++++|+...|+||.+..++++.|+|.||||+||...+++++|||+.|.-|||||
T Consensus 81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG 160 (228)
T PF12481_consen 81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG 160 (228)
T ss_pred EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred EecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcEEEEeCCCCCCcccCCCcce--eeCceeEE
Q 026581 160 ITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKITAVPAAEEE--IWGATFKV 226 (236)
Q Consensus 160 ~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~~~~~~~~~r~ds~--i~g~~~~~ 226 (236)
.+.||.++||++...|...|++...+||+|++|... +++++|.+|.++.+.+||.||+ |||+||||
T Consensus 161 i~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~-~Gl~sfehP~nk~k~~prvDseG~~cGa~FkV 228 (228)
T PF12481_consen 161 IAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSE-GGLRSFEHPKNKVKAMPRVDSEGQMCGATFKV 228 (228)
T ss_pred EeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEec-CceEeecCCcccccccccccCcccCcceeeeC
Confidence 998899999999999999999999999999999885 7899999999999999999999 99999997
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=6e-40 Score=314.17 Aligned_cols=189 Identities=25% Similarity=0.403 Sum_probs=162.4
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEcCcEEEEEeeC---CCCCCcceEEeeCCcEE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~la~~~~---~~~~~~QP~~~~~~~~~ 77 (236)
||||++..-.+.. .......+.+|++.|.|||||+++++..+++.|+|+|. +...+.||+++.+++++
T Consensus 1 MCGI~g~~~~~~~---------~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~ 71 (578)
T PLN02549 1 MCGILAVLGCSDD---------SQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIV 71 (578)
T ss_pred CCcEEEEEeCCCC---------cchhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEE
Confidence 9999997621110 00123567899999999999999999988899999993 33568999998888999
Q ss_pred EEEeeEEcchhhHHHHhC-C---CCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcCCCC
Q 026581 78 CLFEGALDNLGSLRQQYG-L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (236)
Q Consensus 78 lv~nG~I~N~~~L~~~lg-~---~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (236)
+++||+|||+.+|+++|. + +.+|+|++ +++|++|| .+++++|+|+|||++||..+++++++|||+|+
T Consensus 72 lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evi--l~ly~~~G-------~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~Gi 142 (578)
T PLN02549 72 VTANGEIYNHKELREKLKLHKFRTGSDCEVI--AHLYEEHG-------EEFVDMLDGMFSFVLLDTRDNSFIAARDHIGI 142 (578)
T ss_pred EEEEEEEEcHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHH-------HHHHHhCCCceEEEEEECCCCEEEEEECCCCC
Confidence 999999999999999985 2 77888885 69999999 78999999999999999988999999999999
Q ss_pred ccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcEEEEeCCCCC
Q 026581 154 VPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNK 208 (236)
Q Consensus 154 rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~~~~ 208 (236)
|||||+...++.++||||+++|...+. .|++|||||++.++.+++++||++.+.
T Consensus 143 kPLyyg~~~~g~~~fASE~KaL~~~~~-~I~~lpPGh~l~~~~~~~~~y~~~~~~ 196 (578)
T PLN02549 143 TPLYIGWGLDGSVWFASEMKALCDDCE-RFEEFPPGHYYSSKAGGFRRWYNPPWF 196 (578)
T ss_pred CCeEEEEecCCeEEEEecHHHHHHHhC-CEEEeCCCeEEEEcCCCEEEEEecccC
Confidence 999999875678999999999998875 699999999999987789999998754
No 4
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=1.3e-39 Score=311.05 Aligned_cols=188 Identities=21% Similarity=0.390 Sum_probs=161.7
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEcCcEEEEEeeC---CCCCCcceEEeeCCcEE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~la~~~~---~~~~~~QP~~~~~~~~~ 77 (236)
||||++---.... . ......+.+|+++|.|||||+.+++..+++.|||+|. +...+.||+++.++.++
T Consensus 1 MCGI~g~~~~~~~-------~--~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~ 71 (554)
T PRK09431 1 MCGIFGILDIKTD-------A--DELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHV 71 (554)
T ss_pred CceEEEEEcCCCc-------c--hhHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEE
Confidence 9999996521111 0 1123678899999999999999999988899999993 33468999998889999
Q ss_pred EEEeeEEcchhhHHHHhC--C---CCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcCCC
Q 026581 78 CLFEGALDNLGSLRQQYG--L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFG 152 (236)
Q Consensus 78 lv~nG~I~N~~~L~~~lg--~---~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G 152 (236)
+++||+|||+.+|+++|. + +.+|+|++ +++|++|| .+++++|+|+|||++||.+++++++||||+|
T Consensus 72 lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Evi--l~ly~~~G-------~~~~~~L~G~FAf~i~D~~~~~l~laRD~~G 142 (554)
T PRK09431 72 LAVNGEIYNHQELRAELGDKYAFQTGSDCEVI--LALYQEKG-------PDFLDDLDGMFAFALYDSEKDAYLIARDPIG 142 (554)
T ss_pred EEEEEEEecHHHHHHHHhccCCcCCCCHHHHH--HHHHHHHH-------HHHHHhCCCceEEEEEECCCCEEEEEeCCCC
Confidence 999999999999999884 2 67788885 69999999 8999999999999999998899999999999
Q ss_pred CccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcEEEEeCCCC
Q 026581 153 KVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKN 207 (236)
Q Consensus 153 ~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~~~ 207 (236)
+|||||+...++.++||||+++|...|. .|+.|||||++.+++|++++||.+.+
T Consensus 143 ikPLyy~~~~~~~~~faSE~kaL~~~~~-~I~~lpPGh~l~~~~g~~~~y~~~~~ 196 (554)
T PRK09431 143 IIPLYYGYDEHGNLYFASEMKALVPVCK-TIKEFPPGHYYWSKDGEFVRYYQRDW 196 (554)
T ss_pred CcceEEEEeCCCeEEEecchHHHHHhcC-CEEEECCCeEEEECCCcEEEecCCCc
Confidence 9999999984478999999999998875 69999999999887777999999765
No 5
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=3.5e-39 Score=309.43 Aligned_cols=189 Identities=24% Similarity=0.396 Sum_probs=158.6
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEc-----CcEEEEEeeC---CCCCCcceEEee
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG-----DNVTLAYTHQ---NESPLRQRSFAV 72 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~-----~~~~la~~~~---~~~~~~QP~~~~ 72 (236)
||||++-.-.... . ......+..|+++|.|||||+++++.. +.+.|||+|. +...+.||+.+.
T Consensus 1 MCGI~gi~~~~~~-------~--~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~ 71 (586)
T PTZ00077 1 MCGILAIFNSKGE-------R--HELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDD 71 (586)
T ss_pred CceEEEEEecCCc-------h--hhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCC
Confidence 9999997521111 0 112356778999999999999999874 5688999983 334689999988
Q ss_pred CCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCCCcHH-HHhhccccceeEEEEECCCCEEE
Q 026581 73 KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPN-HVVGHLSGYFAFIVYDKSTSTLF 145 (236)
Q Consensus 73 ~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~~~~~-~~l~~L~G~fa~vi~d~~~~~l~ 145 (236)
+++++++|||+|||+.+|+++| |+ +.+|+|++ +++|++|| . +++++|+|+|||++||.++++++
T Consensus 72 d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evi--l~ly~~~G-------~~~~l~~L~G~FAf~i~D~~~~~l~ 142 (586)
T PTZ00077 72 DETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEII--GHLYKEYG-------PKDFWNHLDGMFATVIYDMKTNTFF 142 (586)
T ss_pred CCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhC-------HHHHHHhcCCCEEEEEEECCCCEEE
Confidence 8899999999999999999998 34 67788875 69999998 6 89999999999999999889999
Q ss_pred EEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeC--CcEEEEeCCCCC
Q 026581 146 VASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAV--GGLRSFENPKNK 208 (236)
Q Consensus 146 ~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~--~~~~~y~~~~~~ 208 (236)
++|||+|+|||||+...+|.++||||+++|...+. .|++|||||++.++. ..+++||.|.+.
T Consensus 143 ~aRD~~GikPLyy~~~~~g~~~faSE~kaL~~~~~-~I~~lpPGh~l~~~~~~~~~~~y~~~~~~ 206 (586)
T PTZ00077 143 AARDHIGIIPLYIGYAKDGSIWFSSELKALHDQCV-EVKQFPPGHYYDQTKEKGEFVRYYNPNWH 206 (586)
T ss_pred EEECCCCCcCeEEEEecCCeEEEEecHHHHHHhcC-CEEEeCCCcEEEecCCcceeEEecCCccc
Confidence 99999999999999854678999999999998875 699999999998875 358899998653
No 6
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.2e-37 Score=291.42 Aligned_cols=208 Identities=16% Similarity=0.148 Sum_probs=165.4
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEE---------------------------cCcE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (236)
|||||+-.-... ....+-.++.+|.|||+|+.++.. .++.
T Consensus 11 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~ 77 (475)
T PRK07631 11 ECGVFGIWGHEE-------------AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKA 77 (475)
T ss_pred CCcEEEEECCch-------------hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCE
Confidence 999999863110 134556789999999999988663 1346
Q ss_pred EEEEeeC---C--CCCCcceEEe--eCCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC-C
Q 026581 54 TLAYTHQ---N--ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (236)
Q Consensus 54 ~la~~~~---~--~~~~~QP~~~--~~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-~ 119 (236)
++||+|- + ...+.||++. .+++++++|||+|+|+++|+++| |+ +.+|+|++ +++|.+++.... +
T Consensus 78 gIGH~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi--~~Li~~~~~~~~~e 155 (475)
T PRK07631 78 AIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVL--AHLIKRSGAPTLKE 155 (475)
T ss_pred EEEEeeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHcCCCHHH
Confidence 7899982 1 2357999973 46789999999999999999998 44 77888875 689988762211 4
Q ss_pred cHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcE
Q 026581 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (236)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (236)
++.+++++|+|+|||+++|. ++++++|||+|+|||||+.. ++.++||||.+||...+.+.+++++||++++++++++
T Consensus 156 ai~~~~~~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~ 232 (475)
T PRK07631 156 QIKNALSMLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGM 232 (475)
T ss_pred HHHHHHHhCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcE
Confidence 56789999999999999995 68999999999999999998 5679999999999888877899999999999988877
Q ss_pred EEEeCCC-CC--Cc-----ccCCCcceeeCceeEE
Q 026581 200 RSFENPK-NK--IT-----AVPAAEEEIWGATFKV 226 (236)
Q Consensus 200 ~~y~~~~-~~--~~-----~~~r~ds~i~g~~~~~ 226 (236)
+.+.... .+ .. ||+||||.|+|.+-+.
T Consensus 233 ~~~~~~~~~~~~~C~fE~iYfarpdS~~~g~~vy~ 267 (475)
T PRK07631 233 RSERFAPNQNRSICSMEYIYFARPDSNVDGINVHT 267 (475)
T ss_pred EEEecCCCCCcccceEEEEEeecCCcccCCeEHHH
Confidence 7665322 11 12 9999999999987553
No 7
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.6e-37 Score=288.25 Aligned_cols=208 Identities=15% Similarity=0.186 Sum_probs=163.5
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEc---------------------------CcE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNV 53 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~ 53 (236)
|||||+-.-.+. ....+-.|+.+|.|||+|+.++... +..
T Consensus 1 MCGI~G~~~~~~-------------~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~ 67 (445)
T PRK08525 1 MCAVVGVINSKN-------------AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEI 67 (445)
T ss_pred CceEEEEEcCcc-------------HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcE
Confidence 999999762111 2345568999999999999997651 247
Q ss_pred EEEEeeC---C--CCCCcceEEe--eCCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC-C
Q 026581 54 TLAYTHQ---N--ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (236)
Q Consensus 54 ~la~~~~---~--~~~~~QP~~~--~~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-~ 119 (236)
+|||+|. + ...+.||+++ .+++++|+|||+|||+.+|+++| |+ +.+|+|++ +++|.+++.... +
T Consensus 68 ~iGH~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi--~~l~~~~~~~~~~e 145 (445)
T PRK08525 68 AIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENL--IHLIARSKKESLKD 145 (445)
T ss_pred EEeecccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHHcCCCHHH
Confidence 8999992 2 2367999997 56889999999999999999998 44 67888875 688887652111 3
Q ss_pred cHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEe--CC
Q 026581 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTA--VG 197 (236)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~--~~ 197 (236)
++.+++++|+|+|||++++. ++++++||++|+|||||+...++.++||||.+||.....+.+++++||++++++ ++
T Consensus 146 a~~~~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~ 223 (445)
T PRK08525 146 RIIEALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGND 223 (445)
T ss_pred HHHHHHHhcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCC
Confidence 56789999999999999985 789999999999999999864467999999999987777778999999999987 34
Q ss_pred cEEEE--eCCCCCC-----cccCCCcceeeCceeE
Q 026581 198 GLRSF--ENPKNKI-----TAVPAAEEEIWGATFK 225 (236)
Q Consensus 198 ~~~~y--~~~~~~~-----~~~~r~ds~i~g~~~~ 225 (236)
+++.+ +....+. .|++||||.|+|.+-+
T Consensus 224 ~~~~~~~~~~~~~~c~fe~iY~~rpds~~~g~~v~ 258 (445)
T PRK08525 224 EFESIQLFEPTPRICAFEYIYFARPDSIVFGKNVY 258 (445)
T ss_pred ceEEEEecCCCCccceeEeeeecCCCceECCEEHH
Confidence 55553 3333222 2999999999998743
No 8
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-38 Score=297.98 Aligned_cols=188 Identities=24% Similarity=0.386 Sum_probs=163.7
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEcCcEEEEEeeC---CCCCCcceEEeeCCcEE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~la~~~~---~~~~~~QP~~~~~~~~~ 77 (236)
||||++.-... . +. . ....+.+|.+.|.|||||..++|...++.+||.|. +...++||+...+++++
T Consensus 1 MCGI~g~~~~~-~-------~~-~-~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~ 70 (542)
T COG0367 1 MCGIAGILNFK-N-------LI-D-AKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYA 70 (542)
T ss_pred CCceeeeeccc-c-------cc-c-chHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEE
Confidence 99999987432 1 10 1 15788999999999999999999988899999993 33457899988677799
Q ss_pred EEEeeEEcchhhHHHHhC---C---CCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcCC
Q 026581 78 CLFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQF 151 (236)
Q Consensus 78 lv~nG~I~N~~~L~~~lg---~---~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~ 151 (236)
++|||||||+.+|+++|. + +.+|+|++ +++|++|| .+++++|+|+|||++||..+++|+++|||+
T Consensus 71 l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvi--l~~y~~~g-------~~~~~~l~G~fAfai~d~~~~~l~laRD~~ 141 (542)
T COG0367 71 IVYNGEIYNVEELRKELREAGYEFRTYSDTEVI--LTLYEEWG-------EDCVEHLNGMFAFAIYDETRQKLFLARDPF 141 (542)
T ss_pred EEECCEeeeHHHHHHHHHhcCceeccccchHHH--HHHHHHHH-------HHHHHHhccceEEEEEECCCCEEEEEecCC
Confidence 999999999999999994 4 78888885 69999999 889999999999999999999999999999
Q ss_pred CCccEEEEEecCCEEEEEeChhhhhhh-----cCCceEEeCCCeEEEEeCCc-EEEEeCCCCCC
Q 026581 152 GKVPLYWGITADGHVAFADDADLLKGA-----CGKSLASFPQGCFFSTAVGG-LRSFENPKNKI 209 (236)
Q Consensus 152 G~rPLyy~~~~dg~~~faSe~~aL~~~-----~~~~i~~lpPG~~~~~~~~~-~~~y~~~~~~~ 209 (236)
|+|||||+.. ++.++||||.|+|..+ +. .|++|||||++.++.++ +.+||.+....
T Consensus 142 GikPLyy~~~-~~~l~faSE~Kal~~~~~~~~~~-~i~~l~pg~~l~~~~~~~~~~y~~~~~~~ 203 (542)
T COG0367 142 GVKPLYYTSK-NENLAFASEIKALLAHPVVRFLR-DIKELPPGHLLEFTDGGLIRRYWRLSEKT 203 (542)
T ss_pred CccccEEEec-CCceEEEechhhhhhCCcccccC-CeEEcCCCcEEEEcCCCceeeeecccccc
Confidence 9999999998 4679999999999998 54 69999999999998877 99999987653
No 9
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.5e-37 Score=286.23 Aligned_cols=209 Identities=14% Similarity=0.137 Sum_probs=166.0
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEc----------------------------Cc
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----------------------------DN 52 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----------------------------~~ 52 (236)
|||||+-.-.+. ....+-.++.+|.|||+|+.|+... ++
T Consensus 11 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~ 77 (484)
T PRK07272 11 ECGVFGIWGHPD-------------AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQ 77 (484)
T ss_pred cCeEEEEECCcc-------------HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCc
Confidence 999999763111 1345667899999999999886542 23
Q ss_pred EEEEEeeC---C--CCCCcceEEe--eCCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC-
Q 026581 53 VTLAYTHQ---N--ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP- 118 (236)
Q Consensus 53 ~~la~~~~---~--~~~~~QP~~~--~~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~- 118 (236)
.++||+|. + ...++||+.. .+++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++.+++....
T Consensus 78 ~~IGH~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI--~~Li~~~~~~~~~ 155 (484)
T PRK07272 78 AAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEIL--MHLIRRSHNPTFM 155 (484)
T ss_pred EEEEEeeccccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHHHcCCCHH
Confidence 68999992 2 2368999986 36789999999999999999998 44 77888885 688887642111
Q ss_pred CcHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCc
Q 026581 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGG 198 (236)
Q Consensus 119 ~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~ 198 (236)
+++.+++++|+|+|||++++. ++|+++|||+|+||||||...++.++||||.+||.....+.+++++||+++++++++
T Consensus 156 eai~~~~~~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g 233 (484)
T PRK07272 156 GKLKEALNTVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEG 233 (484)
T ss_pred HHHHHHHHHccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCc
Confidence 456889999999999999985 789999999999999999864567999999999988877789999999999998877
Q ss_pred EEEEe--CCCCCC------cccCCCcceeeCceeEE
Q 026581 199 LRSFE--NPKNKI------TAVPAAEEEIWGATFKV 226 (236)
Q Consensus 199 ~~~y~--~~~~~~------~~~~r~ds~i~g~~~~~ 226 (236)
++.++ .+.... .|++||||.|+|.+++-
T Consensus 234 ~~~~~~~~~~~~~~C~FE~vYfarpds~i~g~~v~~ 269 (484)
T PRK07272 234 IQYDSYTTDTQLAICSMEYIYFARPDSTIHGVNVHT 269 (484)
T ss_pred eEEEEecCCccccccchhhhhhcCCccccCCEEHHH
Confidence 66653 332221 29999999999998864
No 10
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.5e-36 Score=281.65 Aligned_cols=208 Identities=16% Similarity=0.166 Sum_probs=164.6
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEE---------------------------cCcE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (236)
|||||+-.-.+. ....+-.++.+|.|||+|+.++.. .++.
T Consensus 11 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~ 77 (471)
T PRK06781 11 ECGVFGIWGHEN-------------AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKS 77 (471)
T ss_pred cCeEEEEEcCcc-------------HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCE
Confidence 999999652110 124555799999999999998663 1235
Q ss_pred EEEEeeC---C--CCCCcceEEe--eCCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC-C
Q 026581 54 TLAYTHQ---N--ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (236)
Q Consensus 54 ~la~~~~---~--~~~~~QP~~~--~~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-~ 119 (236)
+|||+|. + ...+.||+.. .+++++++|||+|+|+++|+++| |+ +.+|+|++ ++++.+++.... +
T Consensus 78 ~IGHvRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI--~~Li~~~~~~~~~e 155 (471)
T PRK06781 78 AIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVL--LHLIKRSTKDSLIE 155 (471)
T ss_pred EEEEeEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHcCCCHHH
Confidence 7899992 2 2367899974 35789999999999999999998 43 77888885 588887652221 4
Q ss_pred cHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcE
Q 026581 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (236)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (236)
++.+++++|+|+|||++++. ++++++||++|+|||||+.. ++.++||||.+||.....+.+++++||++++++++++
T Consensus 156 ai~~~~~~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~ 232 (471)
T PRK06781 156 SVKEALNKVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGI 232 (471)
T ss_pred HHHHHHHhCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCce
Confidence 67899999999999999995 78999999999999999998 5679999999999988777899999999999988777
Q ss_pred EEEeCCC--C-CCc-----ccCCCcceeeCceeEE
Q 026581 200 RSFENPK--N-KIT-----AVPAAEEEIWGATFKV 226 (236)
Q Consensus 200 ~~y~~~~--~-~~~-----~~~r~ds~i~g~~~~~ 226 (236)
+.+..+. . ..+ |++||||.|+|.+-+.
T Consensus 233 ~~~~~~~~~~~~~C~fE~vYfarpds~~~g~~vy~ 267 (471)
T PRK06781 233 HVDRFTNEVDHAICSMEYIYFARPDSNIAGINVHA 267 (471)
T ss_pred EEEecCcCcccccceEEEEEecCCCceeCCEEHHH
Confidence 6654322 2 222 9999999999987553
No 11
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=2.1e-36 Score=291.22 Aligned_cols=186 Identities=22% Similarity=0.375 Sum_probs=156.2
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEcCcEEEEEeeC---CC-CCCcceEEeeCCcE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NE-SPLRQRSFAVKDEI 76 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~la~~~~---~~-~~~~QP~~~~~~~~ 76 (236)
||||++.--.... ......+.+|++.|.|||||+.+++..++++|||+|. +. ..+.||+.+.++++
T Consensus 1 McGI~G~~~~~~~----------~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~ 70 (589)
T TIGR03104 1 MCGICGEIRFDGQ----------APDVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGL 70 (589)
T ss_pred CcEEEEEEecCCC----------cchHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCE
Confidence 9999996511110 0123678899999999999999999998999999983 22 35789999888899
Q ss_pred EEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcC
Q 026581 77 FCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQ 150 (236)
Q Consensus 77 ~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~ 150 (236)
+++|||+|||+.+|+++| |+ +.+|+|++ +++|++|| .+++++|+|+|||++||..+++++++|||
T Consensus 71 ~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evi--l~~y~~~G-------~~~~~~l~G~fa~~i~d~~~~~l~laRD~ 141 (589)
T TIGR03104 71 ALVFNGCIYNYRELRAELEALGYRFFSDGDTEVI--LKAYHAWG-------RDCVSRFNGMFAFAIWERDSGRLLLARDR 141 (589)
T ss_pred EEEECCEecCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHH-------HHHHHHhhcceEEEEEeCCCCEEEEEecC
Confidence 999999999999999988 44 67777774 69999999 89999999999999999999999999999
Q ss_pred CCCccEEEEEecCCEEEEEeChhhhhhhc---------------------------CCceEEeCCCeEEEEe-CCc--EE
Q 026581 151 FGKVPLYWGITADGHVAFADDADLLKGAC---------------------------GKSLASFPQGCFFSTA-VGG--LR 200 (236)
Q Consensus 151 ~G~rPLyy~~~~dg~~~faSe~~aL~~~~---------------------------~~~i~~lpPG~~~~~~-~~~--~~ 200 (236)
+|+|||||+.. ++.++||||+++|...+ .+.|+.|||||++.++ +++ .+
T Consensus 142 ~G~kPLyy~~~-~~~~~faSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~~~~~~~~~ 220 (589)
T TIGR03104 142 LGIKPLYYAED-AGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVEPDGSRTQR 220 (589)
T ss_pred CCCCCeEEEEe-CCEEEEEeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEECCCCeEEE
Confidence 99999999997 57899999999987531 1468999999999886 343 66
Q ss_pred EEeCCC
Q 026581 201 SFENPK 206 (236)
Q Consensus 201 ~y~~~~ 206 (236)
+||.+.
T Consensus 221 ~yw~~~ 226 (589)
T TIGR03104 221 SYWSLD 226 (589)
T ss_pred eeccCC
Confidence 899875
No 12
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.5e-36 Score=281.67 Aligned_cols=207 Identities=14% Similarity=0.097 Sum_probs=163.3
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEc--------------------------CcEE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG--------------------------DNVT 54 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~--------------------------~~~~ 54 (236)
|||||+-.-... ....+-.++.+|.|||+|+.++... ++.+
T Consensus 19 mCGI~G~~~~~~-------------~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~g 85 (474)
T PRK06388 19 DCAVVGFKGGIN-------------AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVG 85 (474)
T ss_pred CCeEEEEECCcc-------------hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEE
Confidence 999999762110 2356778999999999999986651 2368
Q ss_pred EEEee---CC--CCCCcceEEe--eCCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHh-cCCC-C
Q 026581 55 LAYTH---QN--ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALR-DRAP-Y 119 (236)
Q Consensus 55 la~~~---~~--~~~~~QP~~~--~~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g-~~g~-~ 119 (236)
|||+| .+ ...++||+.. ..++++|+|||+|+|+.+|+++| |+ +.+|+|++ ++++.+.- ..+. +
T Consensus 86 IGH~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi--~~li~~~~~~~~~~e 163 (474)
T PRK06388 86 VGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVM--LAELSRNISKYGLKE 163 (474)
T ss_pred EeeeeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHH--HHHHHHHHhcCCHHH
Confidence 99998 12 2367899974 35789999999999999999998 44 78888885 57775321 1121 4
Q ss_pred cHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcE
Q 026581 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (236)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (236)
++.+++++|+|+|||++++. ++|+++||++|+|||||+.. ++.++||||.+||.....+.+++|+||++++++++++
T Consensus 164 ai~~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~ 240 (474)
T PRK06388 164 GFERSMERLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGY 240 (474)
T ss_pred HHHHHHHhccCceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCce
Confidence 56789999999999999974 79999999999999999998 5679999999999998887899999999999988887
Q ss_pred EEEeC-CCCC--C-----cccCCCcceeeCceeE
Q 026581 200 RSFEN-PKNK--I-----TAVPAAEEEIWGATFK 225 (236)
Q Consensus 200 ~~y~~-~~~~--~-----~~~~r~ds~i~g~~~~ 225 (236)
+++.. +..+ . .||+||||.|+|.+-+
T Consensus 241 ~~~~~~~~~~~~~C~fE~iYfarpds~~~g~~vy 274 (474)
T PRK06388 241 KTIFKLDGDKVAHCMFEYVYFSRPDSIIDGINVY 274 (474)
T ss_pred EEEEecCCCccccceEEEEeecCCccccCCcHHH
Confidence 66544 2221 1 2999999999998754
No 13
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.1e-36 Score=280.79 Aligned_cols=209 Identities=17% Similarity=0.183 Sum_probs=162.5
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEE---------------------------cCcE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (236)
|||||+-.-.+. .....+-.++.+|.|||+|+.++.. .++.
T Consensus 33 mCGI~Gi~~~~~------------~~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i 100 (500)
T PRK07349 33 ACGVFGVYAPGE------------EVAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDL 100 (500)
T ss_pred CCeEEEEECCCc------------CHHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCE
Confidence 999999762110 0234555799999999999998654 1236
Q ss_pred EEEEeeC---C--CCCCcceEEee--CCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC--
Q 026581 54 TLAYTHQ---N--ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-- 118 (236)
Q Consensus 54 ~la~~~~---~--~~~~~QP~~~~--~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-- 118 (236)
+|||+|. + ...++||+... .++++++|||+|+|+.+|+++| |+ +.+|+|++ +++|.+....+.
T Consensus 101 ~IGHvRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi--~~li~~~~~~~~~~ 178 (500)
T PRK07349 101 AVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMI--AFAIAQAVDAGKDW 178 (500)
T ss_pred EEEEeecccCCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHHhcCCCH
Confidence 8999992 1 13579999864 4789999999999999999998 43 78888885 577765322221
Q ss_pred -CcHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEec---CCEEEEEeChhhhhhhcCCceEEeCCCeEEEE
Q 026581 119 -YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA---DGHVAFADDADLLKGACGKSLASFPQGCFFST 194 (236)
Q Consensus 119 -~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~---dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~ 194 (236)
+++.+++++|+|+|||++++. ++|+++||++|+|||||+... ++.++||||.+||.....+.+++++||+++++
T Consensus 179 ~eai~~~~~~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i 256 (500)
T PRK07349 179 LEAAISAFQRCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWI 256 (500)
T ss_pred HHHHHHHHHHhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEE
Confidence 456789999999999999874 789999999999999999852 24799999999998877778999999999999
Q ss_pred eCCcEEEEeC-C-CC-CC-----cccCCCcceeeCceeE
Q 026581 195 AVGGLRSFEN-P-KN-KI-----TAVPAAEEEIWGATFK 225 (236)
Q Consensus 195 ~~~~~~~y~~-~-~~-~~-----~~~~r~ds~i~g~~~~ 225 (236)
++++++.+.. + .. +. .||+||||.|+|.+-+
T Consensus 257 ~~~g~~~~~~~~~~~~~~C~fE~vYfarpdS~~~g~~V~ 295 (500)
T PRK07349 257 TEGGLSSFHWAQEPQRKLCIFEMIYFARPDSRMHGESLY 295 (500)
T ss_pred ECCceEEEecccCCCcceeEEEeeeccCCCCccCCeEHH
Confidence 8877776543 2 11 22 2999999999998754
No 14
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.1e-36 Score=282.30 Aligned_cols=209 Identities=18% Similarity=0.214 Sum_probs=163.6
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEc---------------------------CcE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNV 53 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~ 53 (236)
|||||+-.-.. + .....+-.++.+|.|||+|+.++... ++.
T Consensus 23 mCGI~Gi~~~~-~-----------~~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i 90 (510)
T PRK07847 23 ECGVFGVWAPG-E-----------EVAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHV 90 (510)
T ss_pred cCeEEEEECCC-c-----------CHHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcE
Confidence 99999976211 0 01244557899999999999986541 235
Q ss_pred EEEEeeC---CC--CCCcceEEee---CCcEEEEEeeEEcchhhHHHHh---C-------C-CCCCchHHHHHHHHHHHh
Q 026581 54 TLAYTHQ---NE--SPLRQRSFAV---KDEIFCLFEGALDNLGSLRQQY---G-------L-AKSANEVILVIEAYKALR 114 (236)
Q Consensus 54 ~la~~~~---~~--~~~~QP~~~~---~~~~~lv~nG~I~N~~~L~~~l---g-------~-~~~d~e~~~~l~~~~~~g 114 (236)
+|||+|. +. ..+.||++.. .++++++|||+|+|+.+|+++| | . +.+|+|++ ++++.+++
T Consensus 91 ~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI--~~Li~~~~ 168 (510)
T PRK07847 91 AIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLV--TALLAHGA 168 (510)
T ss_pred EEEeccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHH--HHHHHHhc
Confidence 8999982 11 2579999853 6789999999999999999988 4 2 67788875 58888765
Q ss_pred cCCC--CcHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEE
Q 026581 115 DRAP--YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFF 192 (236)
Q Consensus 115 ~~g~--~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~ 192 (236)
..+. +++.+++++|+|+|||+++|. ++|+++||++|+|||||+.. ++.++||||.++|.....+.|+++|||+++
T Consensus 169 ~~~~~~eai~~~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv 245 (510)
T PRK07847 169 ADSTLEQAALELLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELI 245 (510)
T ss_pred cCCCHHHHHHHHHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEE
Confidence 3222 356789999999999999995 68999999999999999998 467999999999988766789999999999
Q ss_pred EEeCCcEEE--EeCCCCCCc-----ccCCCcceeeCceeEE
Q 026581 193 STAVGGLRS--FENPKNKIT-----AVPAAEEEIWGATFKV 226 (236)
Q Consensus 193 ~~~~~~~~~--y~~~~~~~~-----~~~r~ds~i~g~~~~~ 226 (236)
.++.++++. |+.+..+.+ |++||||.|+|.+-+.
T Consensus 246 ~I~~~gv~~~~~~~~~~~~C~fE~vYfarpdS~~~g~~v~~ 286 (510)
T PRK07847 246 AIDADGLRSTRFAEPTPKGCVFEYVYLARPDTTIAGRSVHA 286 (510)
T ss_pred EEECCceEEEeccCCCCCCCeEEEEEecCCcceeCCeEHHH
Confidence 998777554 455433332 9999999999987543
No 15
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=1.4e-35 Score=253.05 Aligned_cols=168 Identities=26% Similarity=0.498 Sum_probs=147.1
Q ss_pred cchHHHHHHHhHhcCCCCcceEEcCcEEEEEeeC---CCCCCcceEEeeCCcEEEEEeeEEcchhhHHHHhC---C---C
Q 026581 27 KTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L---A 97 (236)
Q Consensus 27 ~~~~~~m~~~l~~RGpd~~~~~~~~~~~la~~~~---~~~~~~QP~~~~~~~~~lv~nG~I~N~~~L~~~lg---~---~ 97 (236)
...+..|+..|+|||||+.+++..++++|+|+|. +...+.||+...++++++++||+|||+.+|+++|+ . +
T Consensus 16 ~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~ 95 (220)
T cd00712 16 RATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRT 95 (220)
T ss_pred HHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCC
Confidence 5778899999999999999999988899999983 22368999998888999999999999999999883 2 5
Q ss_pred CCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhh
Q 026581 98 KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKG 177 (236)
Q Consensus 98 ~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~ 177 (236)
.+|+|+ ++++|++|| .++++.|+|+|||++||.++++++++||++|+|||||+.. ++.++||||.++|..
T Consensus 96 ~sD~e~--l~~~~~~~g-------~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aSe~~~l~~ 165 (220)
T cd00712 96 HSDTEV--ILHLYEEWG-------EDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKALLA 165 (220)
T ss_pred CChHHH--HHHHHHHHh-------HHHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEcchHHHHh
Confidence 667776 468999998 8999999999999999998899999999999999999998 578999999999987
Q ss_pred hcC--------------------------CceEEeCCCeEEEEeCCc--EEEEeC
Q 026581 178 ACG--------------------------KSLASFPQGCFFSTAVGG--LRSFEN 204 (236)
Q Consensus 178 ~~~--------------------------~~i~~lpPG~~~~~~~~~--~~~y~~ 204 (236)
.+. +.|+.|||||++.++.++ .++||+
T Consensus 166 ~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 166 LPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred cCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEECCCeEEeeeCC
Confidence 532 479999999999998764 678884
No 16
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.3e-35 Score=275.85 Aligned_cols=202 Identities=18% Similarity=0.231 Sum_probs=160.0
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEE--------------------------cCcEE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--------------------------GDNVT 54 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~--------------------------~~~~~ 54 (236)
|||||+-.-.. ....+-.++.+|.|||+|+.++.. .++.+
T Consensus 4 ~CGI~G~~~~~--------------~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~ 69 (442)
T PRK08341 4 KCGIFAAYSEN--------------APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLA 69 (442)
T ss_pred ccEEEEEECCC--------------cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEE
Confidence 89999986210 235677899999999999999754 24578
Q ss_pred EEEee---CCCCCCcceEEee--CCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHH----HHHhcCCCC
Q 026581 55 LAYTH---QNESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAY----KALRDRAPY 119 (236)
Q Consensus 55 la~~~---~~~~~~~QP~~~~--~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~----~~~g~~g~~ 119 (236)
|||+| .+...+.||+... ++.++++|||+|+|+.+|+++| |+ +.+|+|++ ++++ .++++ -.+
T Consensus 70 IGH~R~sT~G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI--~~li~~~~~~~~~-~~~ 146 (442)
T PRK08341 70 IGHVRYSTSGSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELI--GISFLWHYSETGD-EFE 146 (442)
T ss_pred EEEeeccccCCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHH--HHHHHHHHHhcCC-HHH
Confidence 99999 2345789999864 4789999999999999999998 44 78888986 3443 33221 014
Q ss_pred cHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcE
Q 026581 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (236)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (236)
++.+++++|+|+|||++++. ++|+++||++|+|||||+.. ++ ++||||.+||...+. .+++++||++++++++++
T Consensus 147 ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~~-~~-~~~ASE~~Al~~~~~-~v~~l~PGeiv~i~~~g~ 221 (442)
T PRK08341 147 AMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLSYGEG-DG-HYFASEDSALRMFVN-EIRDVFPGEVFVVSEGEV 221 (442)
T ss_pred HHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEEEEEC-CE-EEEEeCcHHHHhhCC-eEEEeCCCEEEEEECCce
Confidence 56789999999999999985 78999999999999999984 44 899999999998875 799999999999988887
Q ss_pred EEEeCCCCC--C-----cccCCCcceeeCcee
Q 026581 200 RSFENPKNK--I-----TAVPAAEEEIWGATF 224 (236)
Q Consensus 200 ~~y~~~~~~--~-----~~~~r~ds~i~g~~~ 224 (236)
+++.....+ . .|++||||.|+|.+-
T Consensus 222 ~~~~~~~~~~~~C~fe~iYfarpds~~~g~~v 253 (442)
T PRK08341 222 ESKVLAREKHHHCVFEYIYFARPDSVIDGVSV 253 (442)
T ss_pred EEEeeccCCCccceEEEEEecCCccccCCcCH
Confidence 765432222 1 299999999999853
No 17
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.6e-35 Score=277.98 Aligned_cols=207 Identities=17% Similarity=0.170 Sum_probs=163.1
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEc----------------------------Cc
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----------------------------DN 52 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----------------------------~~ 52 (236)
|||||+-.-.. .....+-.++.+|.|||+|+.++... ++
T Consensus 21 mCGI~Gi~~~~-------------~~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~ 87 (479)
T PRK09123 21 ECGVFGILGHP-------------DAAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGN 87 (479)
T ss_pred cCeEEEEEcCc-------------chHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCC
Confidence 99999976210 02345667999999999999986641 23
Q ss_pred EEEEEeeC---C--CCCCcceEEee--CCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC-
Q 026581 53 VTLAYTHQ---N--ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP- 118 (236)
Q Consensus 53 ~~la~~~~---~--~~~~~QP~~~~--~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~- 118 (236)
.+|||+|. + ...+.||++.. +++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++.+++....
T Consensus 88 ~~IGH~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi--~~Li~~~~~~~~~ 165 (479)
T PRK09123 88 RAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVI--LHLIARSRKASFL 165 (479)
T ss_pred EEEEEEecccCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHccCCHH
Confidence 58899992 2 23678999864 6789999999999999999998 43 67888885 578876542111
Q ss_pred CcHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCc
Q 026581 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGG 198 (236)
Q Consensus 119 ~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~ 198 (236)
+++.+++++|+|+|||++++. ++|+++||++|+|||||+.. ++.++||||.++|.....+.+++++||++++++.++
T Consensus 166 eai~~~~~~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g 242 (479)
T PRK09123 166 DRFIDALRQVEGAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDG 242 (479)
T ss_pred HHHHHHHHHhhcceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCC
Confidence 346789999999999999985 69999999999999999998 568999999999987766789999999999987666
Q ss_pred -EEEEeCCC---CCC-----cccCCCcceeeCceeE
Q 026581 199 -LRSFENPK---NKI-----TAVPAAEEEIWGATFK 225 (236)
Q Consensus 199 -~~~y~~~~---~~~-----~~~~r~ds~i~g~~~~ 225 (236)
++++.... .+. .|++||||.|+|.+-+
T Consensus 243 ~~~~~~~~~~~~~~~C~FE~VYfarPdS~~~g~~vy 278 (479)
T PRK09123 243 SIESIKPFPPQPARFCIFEYVYFARPDSVVGGRSVY 278 (479)
T ss_pred cEEEEEecCCCCCCCChhheEEecCCCceECCeEHH
Confidence 76654322 122 2999999999998754
No 18
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4e-35 Score=275.06 Aligned_cols=209 Identities=14% Similarity=0.159 Sum_probs=165.2
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEE---------------------------cCcE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (236)
|||||+-.-.... .....+-.++.+|+|||+|+.|+.. .++.
T Consensus 14 mCGI~Gi~~~~~~-----------~~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~ 82 (469)
T PRK05793 14 ECGVFGVFSKNNI-----------DVASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNS 82 (469)
T ss_pred CCeEEEEEcCCCc-----------cHHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcE
Confidence 9999998621100 0123455689999999999998753 1346
Q ss_pred EEEEeeC---C--CCCCcceEEee--CCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC-C
Q 026581 54 TLAYTHQ---N--ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (236)
Q Consensus 54 ~la~~~~---~--~~~~~QP~~~~--~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-~ 119 (236)
+|||+|. + ...+.||+... +++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++.+++..+. +
T Consensus 83 ~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi--~~li~~~~~~~~~~ 160 (469)
T PRK05793 83 AIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVI--LNLIARSAKKGLEK 160 (469)
T ss_pred EEEEeecccCCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHccCCHHH
Confidence 7899982 1 23579999874 5789999999999999999988 43 78888885 588887653222 4
Q ss_pred cHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcE
Q 026581 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (236)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (236)
++.+++++|+|+||+++++. ++++++||++|+|||||+.. ++.++||||.++|.....+.+++++|||+++++.+++
T Consensus 161 ai~~~~~~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~ 237 (469)
T PRK05793 161 ALVDAIQAIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGI 237 (469)
T ss_pred HHHHHHHHhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCce
Confidence 67889999999999999985 78999999999999999998 5679999999999988777899999999999988877
Q ss_pred EEEeCCC--C-CCc-----ccCCCcceeeCceeE
Q 026581 200 RSFENPK--N-KIT-----AVPAAEEEIWGATFK 225 (236)
Q Consensus 200 ~~y~~~~--~-~~~-----~~~r~ds~i~g~~~~ 225 (236)
+.+..+. . ..+ |++||||.|+|.+-+
T Consensus 238 ~~~~~~~~~~~~~C~fe~vYfarpds~~~g~~v~ 271 (469)
T PRK05793 238 KSIKFAEKTKCQTCAFEYIYFARPDSVIDGISVY 271 (469)
T ss_pred EEEecCcCccccccEEEEEEeccCCcccCCeEhh
Confidence 7665322 1 122 999999999998754
No 19
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=2.2e-35 Score=286.21 Aligned_cols=188 Identities=23% Similarity=0.377 Sum_probs=156.3
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEcCcEEEEEeeC---CCCCCcceEEeeCCcEE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~la~~~~---~~~~~~QP~~~~~~~~~ 77 (236)
||||++.--.... .+.....+.+|++.|.|||||+.+++..++++|||+|. +...+.||+.+.+++++
T Consensus 1 McGI~G~~~~~~~---------~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~ 71 (628)
T TIGR03108 1 MCGITGIFDLTGQ---------RPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVV 71 (628)
T ss_pred CCEEEEEEECCCC---------ccccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEE
Confidence 9999996411110 01123568899999999999999999988899999983 33457899998888999
Q ss_pred EEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcCC
Q 026581 78 CLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQF 151 (236)
Q Consensus 78 lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~ 151 (236)
++|||+|||+.+|+++| |+ +.+|+|++ +++|++|| .+++++|+|+|||++||..+++++++||++
T Consensus 72 lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi--~~~~~~~g-------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~ 142 (628)
T TIGR03108 72 VVFNGEIYNFQELVAELQALGHVFRTRSDTEVI--VHAWEEWG-------EACVERFRGMFAFALWDRNQETLFLARDRL 142 (628)
T ss_pred EEECCeECCHHHHHHHHHhcCCccCCCChHHHH--HHHHHHHH-------HHHHHHcCCCEEEEEEECCCCEEEEEECCC
Confidence 99999999999999987 44 67788874 69999999 899999999999999999999999999999
Q ss_pred CCccEEEEEecCCEEEEEeChhhhhhhc--------------------------CCceEEeCCCeEEEEeCCc----EEE
Q 026581 152 GKVPLYWGITADGHVAFADDADLLKGAC--------------------------GKSLASFPQGCFFSTAVGG----LRS 201 (236)
Q Consensus 152 G~rPLyy~~~~dg~~~faSe~~aL~~~~--------------------------~~~i~~lpPG~~~~~~~~~----~~~ 201 (236)
|++||||+...++.++||||.++|...+ .+.|+.|||||++.++.++ .++
T Consensus 143 G~~PLyy~~~~~~~~~faSe~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~~~~~~~~~~~ 222 (628)
T TIGR03108 143 GIKPLYYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGAPPARPRC 222 (628)
T ss_pred CCcceEEEEeCCCEEEEEecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEEECCCcceeccc
Confidence 9999999975456899999999987542 1579999999999887542 467
Q ss_pred EeCCC
Q 026581 202 FENPK 206 (236)
Q Consensus 202 y~~~~ 206 (236)
||.+.
T Consensus 223 yw~~~ 227 (628)
T TIGR03108 223 YWDVS 227 (628)
T ss_pred cccCC
Confidence 88864
No 20
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=2.4e-34 Score=270.18 Aligned_cols=168 Identities=24% Similarity=0.367 Sum_probs=145.2
Q ss_pred cchHHHHHHHhHhcCCCCcceE-EcCcEEEEEeeC---CCCCCcceEEeeCCcEEEEEeeEEcchhhHHHHh---CC---
Q 026581 27 KTTSTALVDRFLQTNSSAVSVQ-VGDNVTLAYTHQ---NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL--- 96 (236)
Q Consensus 27 ~~~~~~m~~~l~~RGpd~~~~~-~~~~~~la~~~~---~~~~~~QP~~~~~~~~~lv~nG~I~N~~~L~~~l---g~--- 96 (236)
...+..|++.|+|||||+.++| ..++++|||+|. +...+.||+.+.+++++++|||+|||+.+|+++| |+
T Consensus 15 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~ 94 (467)
T TIGR01536 15 DEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQ 94 (467)
T ss_pred HHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccC
Confidence 3568899999999999999999 888899999993 3334589999888899999999999999999988 33
Q ss_pred CCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhh
Q 026581 97 AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLK 176 (236)
Q Consensus 97 ~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~ 176 (236)
+.+|+|++ +++|++|| .+++++|+|+|||++||.++++++++||++|+|||||+.. ++.++||||+++|.
T Consensus 95 ~~~D~e~i--l~~y~~~g-------~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~ 164 (467)
T TIGR01536 95 TDSDTEVI--LHLYEEWG-------EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALL 164 (467)
T ss_pred CCCHHHHH--HHHHHHHH-------HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHH
Confidence 67777774 69999999 8999999999999999999999999999999999999998 57899999999987
Q ss_pred hhc---------------------------CCceEEeCCCeEEEEeCCc---EEEEeC
Q 026581 177 GAC---------------------------GKSLASFPQGCFFSTAVGG---LRSFEN 204 (236)
Q Consensus 177 ~~~---------------------------~~~i~~lpPG~~~~~~~~~---~~~y~~ 204 (236)
..+ .+.|+.+||||++.++.++ .++||.
T Consensus 165 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~~~~~~~~~~~~~ 222 (467)
T TIGR01536 165 AHPRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLEDDGLNIERYYWE 222 (467)
T ss_pred hccccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEeCCCceEEEEecC
Confidence 643 1568999999999887543 445665
No 21
>PLN02440 amidophosphoribosyltransferase
Probab=100.00 E-value=5.5e-34 Score=267.96 Aligned_cols=207 Identities=16% Similarity=0.142 Sum_probs=160.9
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEE---------------------------cCcE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (236)
|||||+-.-. + + ....+-.|+.+|.|||+|+.++.. .++.
T Consensus 1 MCGI~Gi~~~--~------~-----~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~ 67 (479)
T PLN02440 1 ECGVVGIFGD--P------E-----ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDI 67 (479)
T ss_pred CceEEEEECC--c------c-----HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcE
Confidence 9999998621 1 0 135677899999999999998764 3347
Q ss_pred EEEEeeC---C--CCCCcceEEee--CCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC-C
Q 026581 54 TLAYTHQ---N--ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (236)
Q Consensus 54 ~la~~~~---~--~~~~~QP~~~~--~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-~ 119 (236)
+|||+|. + ...+.||+... +++++++|||+|+|+.+|+++| |. +.+|+|++ +++|.++..... +
T Consensus 68 ~IGHvRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi--~~li~~~~~~~~~~ 145 (479)
T PLN02440 68 AIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVL--LHLIAISKARPFFS 145 (479)
T ss_pred EEEEEeccccCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhhhhhHHH
Confidence 8999992 1 24689999863 4679999999999999999988 33 67888885 577776531111 2
Q ss_pred cHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcE
Q 026581 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGL 199 (236)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~ 199 (236)
++.++++.|+|+||+++||. ++|+++||++|+|||||+...++.++||||.++|.....+.+++++||++++++++++
T Consensus 146 a~~~~~~~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g~ 223 (479)
T PLN02440 146 RIVDACEKLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDKG 223 (479)
T ss_pred HHHHHHHHhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCCc
Confidence 34789999999999999995 5799999999999999997645689999999999988777899999999999987763
Q ss_pred EEEe---CCCC-CC-----cccCCCcceeeCcee
Q 026581 200 RSFE---NPKN-KI-----TAVPAAEEEIWGATF 224 (236)
Q Consensus 200 ~~y~---~~~~-~~-----~~~~r~ds~i~g~~~ 224 (236)
.+.. .... .. .|++||||.|.|.+-
T Consensus 224 ~~~~~~~~~~~~~~C~fe~vYf~~p~s~~~g~~~ 257 (479)
T PLN02440 224 VSSQCLMPHPEPKPCIFEHIYFARPNSIVFGRSV 257 (479)
T ss_pred EEEeeccCCCCcccceEEEEeecCCCccccCeEh
Confidence 3322 2222 11 299999999999753
No 22
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.4e-34 Score=269.42 Aligned_cols=209 Identities=17% Similarity=0.173 Sum_probs=161.5
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEE---------------------------cCcE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (236)
|||||+-.-. + + ....+-.|+.+|.|||||+.+++. .++.
T Consensus 1 MCGI~Gi~~~--~----------~-~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~ 67 (501)
T PRK09246 1 MCGIVGIVGH--S----------P-VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNM 67 (501)
T ss_pred CceEEEEEcC--c----------C-HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCE
Confidence 9999998731 1 0 124566899999999999999776 3467
Q ss_pred EEEEeeC---C--CCCCcceEEe-eCCcEEEEEeeEEcchhhHHHHh----CC---CCCCchHHHHHHHHHHHhcC--C-
Q 026581 54 TLAYTHQ---N--ESPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY----GL---AKSANEVILVIEAYKALRDR--A- 117 (236)
Q Consensus 54 ~la~~~~---~--~~~~~QP~~~-~~~~~~lv~nG~I~N~~~L~~~l----g~---~~~d~e~~~~l~~~~~~g~~--g- 117 (236)
+|||+|. + ...+.||+.. ..++++++|||+|+|+++|+++| +. +.+|+|++ ++++.++... +
T Consensus 68 ~IGHvRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi--~~li~~~l~~~~g~ 145 (501)
T PRK09246 68 GIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVL--LNVFAHELQKFRGL 145 (501)
T ss_pred EEEEEcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHH--HHHHHHHHHhcccc
Confidence 8999992 2 2368999984 34569999999999999999988 22 78888885 5788765321 1
Q ss_pred -------CCcHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEec---CCEEEEEeChhhhhhhcCCceEEeC
Q 026581 118 -------PYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA---DGHVAFADDADLLKGACGKSLASFP 187 (236)
Q Consensus 118 -------~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~---dg~~~faSe~~aL~~~~~~~i~~lp 187 (236)
.+++.++++.|+|+||++++.. .++|+++||++|+|||||+..+ ++.++||||.+||.....+.+++++
T Consensus 146 ~~~~~~l~eai~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~ 224 (501)
T PRK09246 146 PLTPEDIFAAVAAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVA 224 (501)
T ss_pred ccCccCHHHHHHHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeC
Confidence 1346689999999999998753 4579999999999999999873 3479999999999998878899999
Q ss_pred CCeEEEEeCCc-EEEEe--C-CCCCCc-----ccCCCcceeeCce-eE
Q 026581 188 QGCFFSTAVGG-LRSFE--N-PKNKIT-----AVPAAEEEIWGAT-FK 225 (236)
Q Consensus 188 PG~~~~~~~~~-~~~y~--~-~~~~~~-----~~~r~ds~i~g~~-~~ 225 (236)
||+++++++++ ..... . +..... |++||||.|.|++ |.
T Consensus 225 PGeiv~i~~~g~~~~~~~~~~~~~~~c~fe~vY~~r~ds~i~g~~vy~ 272 (501)
T PRK09246 225 PGEAIYITEDGQLHTRQCAENPKLNPCIFEYVYFARPDSIIDGISVYK 272 (501)
T ss_pred CCeEEEEECCCcEehhhhcCCCCCcceEEEEEEcCCchhhccCeeHHh
Confidence 99999988766 33221 2 222222 9999999999997 54
No 23
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00 E-value=2.8e-33 Score=243.74 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=151.1
Q ss_pred chHHHHHHHhHhcCCCCcceEEc---------------------------CcEEEEEeeC---C--CCCCcceEEee--C
Q 026581 28 TTSTALVDRFLQTNSSAVSVQVG---------------------------DNVTLAYTHQ---N--ESPLRQRSFAV--K 73 (236)
Q Consensus 28 ~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~la~~~~---~--~~~~~QP~~~~--~ 73 (236)
..+..|++.|+|||||+.++... +..+|||+|. + ...+.||+... +
T Consensus 14 ~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~g~~~~~n~qPf~~~~~~ 93 (252)
T cd00715 14 RLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPL 93 (252)
T ss_pred HHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccCCCCCccCCCCcEEecCC
Confidence 55668999999999999997642 2357999992 1 13578999863 4
Q ss_pred CcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC--CcHHHHhhccccceeEEEEECCCCEEE
Q 026581 74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP--YPPNHVVGHLSGYFAFIVYDKSTSTLF 145 (236)
Q Consensus 74 ~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~--~~~~~~l~~L~G~fa~vi~d~~~~~l~ 145 (236)
++++++|||+|+|+.+|+++| +. +.+|+|++ ++++.++++.+. +++.++++.|+|.||++++|. ++|+
T Consensus 94 ~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi--~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~--~~l~ 169 (252)
T cd00715 94 GGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVI--LHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTA--DGLI 169 (252)
T ss_pred CcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHH--HHHHHHhhccCCHHHHHHHHHHhccCceEEEEEEC--CEEE
Confidence 789999999999999999987 22 67888885 588888874311 356789999999999999997 8999
Q ss_pred EEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcEEEEeCC--CC-CCc-----ccCCCcc
Q 026581 146 VASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENP--KN-KIT-----AVPAAEE 217 (236)
Q Consensus 146 ~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~--~~-~~~-----~~~r~ds 217 (236)
++||++|+|||||+...++.++||||.++|.....+.++++|||++++++.+++..+..+ .. +.+ |++||||
T Consensus 170 ~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~~~~~~~~~~~~~~c~~e~~y~~~~~~ 249 (252)
T cd00715 170 AVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLESSQRAPKPKPAPCIFEYVYFARPDS 249 (252)
T ss_pred EEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCceEEEEecCCCCCCcceEEEEeecCCcc
Confidence 999999999999999743789999999999886556799999999999987776655322 22 222 9999999
Q ss_pred eee
Q 026581 218 EIW 220 (236)
Q Consensus 218 ~i~ 220 (236)
+|+
T Consensus 250 ~~~ 252 (252)
T cd00715 250 VID 252 (252)
T ss_pred ccC
Confidence 985
No 24
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=100.00 E-value=2.3e-33 Score=261.63 Aligned_cols=193 Identities=18% Similarity=0.151 Sum_probs=154.8
Q ss_pred chHHHHHHHhHhcCCCCcceEE---------------------------cCcEEEEEeeC---C--CCCCcceEEe-eCC
Q 026581 28 TTSTALVDRFLQTNSSAVSVQV---------------------------GDNVTLAYTHQ---N--ESPLRQRSFA-VKD 74 (236)
Q Consensus 28 ~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~la~~~~---~--~~~~~QP~~~-~~~ 74 (236)
..+..|+.+|.|||+|+.++.. .++.+|||+|. + ...+.||+.. ..+
T Consensus 15 ~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~G~~~~~n~QPf~~~~~~ 94 (442)
T TIGR01134 15 SLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSPG 94 (442)
T ss_pred HHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCCCCCCccCCCCEEEeCCC
Confidence 4566899999999999999763 23578999992 1 2357899984 345
Q ss_pred cEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCC-C--CcHHHHhhccccceeEEEEECCCCEEE
Q 026581 75 EIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRA-P--YPPNHVVGHLSGYFAFIVYDKSTSTLF 145 (236)
Q Consensus 75 ~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g-~--~~~~~~l~~L~G~fa~vi~d~~~~~l~ 145 (236)
+++++|||+|+|+.+|+++| |. +.+|+|++ +++|.+++..+ . +++.+++++|+|.|||+++| .++++
T Consensus 95 g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi--~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi~~--~~~L~ 170 (442)
T TIGR01134 95 GIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVL--LHLLARERLEEDDLFEAIARVLKRVRGAYALVIMI--GDGLI 170 (442)
T ss_pred CEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhhcccCCHHHHHHHHHHHhCccceEEEEE--CCEEE
Confidence 69999999999999999988 32 67888885 68888765211 1 45678999999999999997 47999
Q ss_pred EEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcEEEEeCCCCC--Cc-----ccCCCcce
Q 026581 146 VASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNK--IT-----AVPAAEEE 218 (236)
Q Consensus 146 ~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~~~~--~~-----~~~r~ds~ 218 (236)
++||++|+|||||+.. ++.++||||.++|.....+.+++++||+++++++++++.+..+..+ .+ |++||||+
T Consensus 171 a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~~~~~~~~~~~c~fe~vYfarpds~ 249 (442)
T TIGR01134 171 AVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLESRLFANTPRAPCIFEYVYFARPDSV 249 (442)
T ss_pred EEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEEEeccCCCCcceEEEEEEecCCcce
Confidence 9999999999999998 5679999999999876667899999999999988887764332222 12 99999999
Q ss_pred eeCceeE
Q 026581 219 IWGATFK 225 (236)
Q Consensus 219 i~g~~~~ 225 (236)
|+|.+-+
T Consensus 250 ~~g~~v~ 256 (442)
T TIGR01134 250 IDGISVY 256 (442)
T ss_pred ECCeEHH
Confidence 9998754
No 25
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=3.6e-34 Score=238.08 Aligned_cols=171 Identities=19% Similarity=0.253 Sum_probs=134.3
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEc----CcEEEEEeeC---CCCCCcceEEeeC
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----DNVTLAYTHQ---NESPLRQRSFAVK 73 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----~~~~la~~~~---~~~~~~QP~~~~~ 73 (236)
||||++.--.... .......+.+|+++|+|||||+++++.. ..+.+++.+. +...+.||+...+
T Consensus 1 MCGI~~~~~~~~~---------~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~ 71 (181)
T cd03766 1 MCGILCSVSPSGP---------HINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQS 71 (181)
T ss_pred CCcEEEEEeCCCC---------cccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCC
Confidence 9999996521111 0002356789999999999999988765 3467888772 2346789999877
Q ss_pred CcEEEEEeeEEcchhhHHHHhCCCCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcCCCC
Q 026581 74 DEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (236)
Q Consensus 74 ~~~~lv~nG~I~N~~~L~~~lg~~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (236)
++++++|||+|||+.+|++ +.+|+|++ +++|++++.. .+++.+++++|+|+|||++||..+++++++|||+|+
T Consensus 72 ~~~~lv~NGeIyN~~~l~~----s~sDtEvi--~~l~~~~g~~-~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~ 144 (181)
T cd03766 72 TGNVLQWNGELYNIDGVED----EENDTEVI--FELLANCSSE-SQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGR 144 (181)
T ss_pred CCEEEEECCEEECcccccC----CCCHHHHH--HHHHHHHhhh-HHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCC
Confidence 7899999999999999975 57888885 6899988721 133468999999999999999988999999999999
Q ss_pred ccEEEEEec-CCEEEEEeChhhhhhhcCCceEEeCCCe
Q 026581 154 VPLYWGITA-DGHVAFADDADLLKGACGKSLASFPQGC 190 (236)
Q Consensus 154 rPLyy~~~~-dg~~~faSe~~aL~~~~~~~i~~lpPG~ 190 (236)
|||||+... ++.++|||+..... ...+.++||+.
T Consensus 145 rPL~y~~~~~~~~l~~aS~~~~~~---~~~~~e~~~~g 179 (181)
T cd03766 145 RSLLYKLDPNGFELSISSVSGSSS---GSGFQEVLAGG 179 (181)
T ss_pred cCcEEEeeCCCCcEEEEEccCCCC---CCceEECCCCc
Confidence 999999974 57899999976431 23588999954
No 26
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-34 Score=259.80 Aligned_cols=190 Identities=25% Similarity=0.402 Sum_probs=163.9
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEcCcEEEEEee---CCCCCCcceEEeeCCcEE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~la~~~---~~~~~~~QP~~~~~~~~~ 77 (236)
|||||.-.-...|+ . .......+...+.|||||+++..+.+...|+|.| .+...+.||+++.++.++
T Consensus 1 MCGI~Av~~~~~~~-~---------~~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~ 70 (543)
T KOG0571|consen 1 MCGILAVLGHEDSE-A---------KKPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYV 70 (543)
T ss_pred CCceeeeecccchh-h---------cChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEE
Confidence 99999876311111 0 3344556788999999999998887767888877 345678999999999999
Q ss_pred EEEeeEEcchhhHHHHhC-C---CCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcCCCC
Q 026581 78 CLFEGALDNLGSLRQQYG-L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (236)
Q Consensus 78 lv~nG~I~N~~~L~~~lg-~---~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (236)
+.+||||||+.+|++.+. + +.+|+|+| +++|.+.|. .++...|+|+|||+++|.+.++++++||++|+
T Consensus 71 ~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvI--i~lY~khg~------~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv 142 (543)
T KOG0571|consen 71 VTVNGEIYNHKKLREHCKDFEFQTGSDCEVI--IHLYEKHGG------EQAICMLDGVFAFVLLDTKDDKVVAARDPIGV 142 (543)
T ss_pred EEECceeccHHHHHHHhhhcccccCCCceee--eehHhhcCc------hhHHHHhhhheEEEEecCCCCeEEeccCCcCc
Confidence 999999999999999884 3 78999996 699998852 78999999999999999999999999999999
Q ss_pred ccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcEEEEeCCCCCC
Q 026581 154 VPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFENPKNKI 209 (236)
Q Consensus 154 rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~~~~~ 209 (236)
+|||||.+.+|.++||||.+.|...|.+ |..|||||++.++.+++.+|++|.|.+
T Consensus 143 ~~lY~g~~~~gs~~~aSe~k~l~d~C~~-i~~fpPgh~y~~~~~~~~r~f~p~w~~ 197 (543)
T KOG0571|consen 143 TPLYYGWDSDGSVYFASEMKCLEDDCEK-IESFPPGHYYTSKTGKLTRYFNPEWFD 197 (543)
T ss_pred eeeEEEecCCCcEEEeeehhhhhhhhhc-eeecCCcceeecccccccCCCCchhhh
Confidence 9999999988999999999999999975 899999999999999999999999854
No 27
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-31 Score=244.26 Aligned_cols=210 Identities=20% Similarity=0.205 Sum_probs=163.5
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEcC----------------------------c
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGD----------------------------N 52 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~----------------------------~ 52 (236)
|||||+-+..+. ++ ..+..-..+..|.|||-++.++...+ .
T Consensus 4 ~CGV~Gi~~~~~-----~~------a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~ 72 (470)
T COG0034 4 MCGVFGIWGHKD-----NN------AAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGN 72 (470)
T ss_pred cceEEEEecCCc-----cc------hHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCc
Confidence 999999884211 11 23566778999999999988764322 2
Q ss_pred EEEEEee-C----CCCCCcceEEee--CCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhc-CCC
Q 026581 53 VTLAYTH-Q----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRD-RAP 118 (236)
Q Consensus 53 ~~la~~~-~----~~~~~~QP~~~~--~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~-~g~ 118 (236)
.++||+| + ....+.||++.+ .+.++|+|||.|.|..+|+++| |. +.+|||++ ++++.+... .+.
T Consensus 73 ~~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvl--l~l~a~~~~~~~~ 150 (470)
T COG0034 73 VGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVL--LHLLARELDEDDI 150 (470)
T ss_pred ceeeEeeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHH--HHHHHhhcccccH
Confidence 3789999 1 234778999865 3469999999999999999998 43 78899985 588876432 111
Q ss_pred -CcHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCC
Q 026581 119 -YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVG 197 (236)
Q Consensus 119 -~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~ 197 (236)
+++.++++.++|.||+++... ++|+++|||+|+|||.+|...||.++||||.+||.....+.++++.||++++++.+
T Consensus 151 ~~a~~~~~~~v~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~ 228 (470)
T COG0034 151 FEAVKEVLRRVKGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITID 228 (470)
T ss_pred HHHHHHHHhhcCCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEec
Confidence 457889999999999999986 59999999999999999998667799999999999999999999999999885443
Q ss_pred --cEEEEe--CCCC-CC-----cccCCCcceeeCceeE
Q 026581 198 --GLRSFE--NPKN-KI-----TAVPAAEEEIWGATFK 225 (236)
Q Consensus 198 --~~~~y~--~~~~-~~-----~~~~r~ds~i~g~~~~ 225 (236)
++.++. .+.. .. .|||||||.|+|++-+
T Consensus 229 ~~g~~s~~~~~~~~~~~C~fEyVYFARPDS~Idg~sVy 266 (470)
T COG0034 229 GDGLESKQVAEPPRRAPCSFEYVYFARPDSVIDGISVY 266 (470)
T ss_pred CceeEEEeccCCCCCccceEEEEEeecCccccCCeeHH
Confidence 355443 3322 22 2999999999999865
No 28
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.97 E-value=6.7e-31 Score=223.89 Aligned_cols=159 Identities=20% Similarity=0.246 Sum_probs=132.8
Q ss_pred chHHHHHHHhHhcCCCCcceEEc---------------------------CcEEEEEeeC---CC--CCCcceEEeeCCc
Q 026581 28 TTSTALVDRFLQTNSSAVSVQVG---------------------------DNVTLAYTHQ---NE--SPLRQRSFAVKDE 75 (236)
Q Consensus 28 ~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~la~~~~---~~--~~~~QP~~~~~~~ 75 (236)
..+..|+.+|+|||||+.+++.. +.++|||+|. +. ..+.||+...+++
T Consensus 14 ~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qPf~~~~~~ 93 (215)
T cd00714 14 DILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATHGEPTDVNAHPHRSCDGE 93 (215)
T ss_pred HHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCCCCCCccCCCCCCcCCCC
Confidence 45678999999999999998764 3478999992 21 3578999877778
Q ss_pred EEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC---CcHHHHhhccccceeEEEEECCC-CEEE
Q 026581 76 IFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---YPPNHVVGHLSGYFAFIVYDKST-STLF 145 (236)
Q Consensus 76 ~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~---~~~~~~l~~L~G~fa~vi~d~~~-~~l~ 145 (236)
++++|||+|||+.+|+++| |+ +.+|+|++ +++|.+++..+. +++.++++.|+|+|||++||... ++|+
T Consensus 94 ~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi--~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l~ 171 (215)
T cd00714 94 IAVVHNGIIENYAELKEELEAKGYKFESETDTEVI--AHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIV 171 (215)
T ss_pred EEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEEE
Confidence 9999999999999999998 44 78888885 588888764332 45678999999999999999875 4999
Q ss_pred EEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEE
Q 026581 146 VASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFS 193 (236)
Q Consensus 146 ~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~ 193 (236)
++|| .|||||+.. ++.++||||.++|...+. .+..+.+|+++.
T Consensus 172 ~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~~~~~~~~~ 214 (215)
T cd00714 172 AARN---GSPLVIGIG-DGENFVASDAPALLEHTR-RVIYLEDGDIAV 214 (215)
T ss_pred EEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCCEEe
Confidence 9999 499999997 568999999999999986 488999998864
No 29
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.97 E-value=4e-30 Score=248.47 Aligned_cols=183 Identities=17% Similarity=0.225 Sum_probs=149.8
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEE---------------------------cCcE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (236)
|||||+-.-.. . ....+..|+..|.|||||+.+++. .+.+
T Consensus 1 MCGI~g~~~~~------------~-~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~ 67 (604)
T PRK00331 1 MCGIVGYVGQR------------N-AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTT 67 (604)
T ss_pred CcEEEEEEcCc------------c-HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcE
Confidence 99999976211 0 135667899999999999999876 3357
Q ss_pred EEEEeeC---CC--CCCcceEEeeCCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC---C
Q 026581 54 TLAYTHQ---NE--SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (236)
Q Consensus 54 ~la~~~~---~~--~~~~QP~~~~~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~---~ 119 (236)
+|||+|. +. ..+.||+.+.+++++++|||+|||+++|+++| |+ +.+|+|++ +++|.++.+.|. +
T Consensus 68 ~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi--~~l~~~~~~~g~~~~~ 145 (604)
T PRK00331 68 GIGHTRWATHGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVI--AHLIEEELKEGGDLLE 145 (604)
T ss_pred EEEEEecCCCCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHH--HHHHHHHHhhCCCHHH
Confidence 8999992 22 35789998777899999999999999999998 44 67888885 588887743332 4
Q ss_pred cHHHHhhccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCc
Q 026581 120 PPNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGG 198 (236)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~-~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~ 198 (236)
++.+++++|+|+|||++||... ++++++||+ |||||+.. ++.++||||.++|...+. .+++|+||+++.+++++
T Consensus 146 a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~~i~~~~ 220 (604)
T PRK00331 146 AVRKALKRLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTR-RVIYLEDGEIAVLTRDG 220 (604)
T ss_pred HHHHHHHhccCeeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCeEEEEECCe
Confidence 5788999999999999999876 899999995 99999997 567999999999999875 58999999999998777
Q ss_pred EEEEe
Q 026581 199 LRSFE 203 (236)
Q Consensus 199 ~~~y~ 203 (236)
++.+.
T Consensus 221 ~~~~~ 225 (604)
T PRK00331 221 VEIFD 225 (604)
T ss_pred EEEEe
Confidence 76665
No 30
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.96 E-value=5.2e-29 Score=240.88 Aligned_cols=169 Identities=18% Similarity=0.232 Sum_probs=141.0
Q ss_pred chHHHHHHHhHhcCCCCcceEE---------------------------cCcEEEEEeeC---C--CCCCcceEEeeCCc
Q 026581 28 TTSTALVDRFLQTNSSAVSVQV---------------------------GDNVTLAYTHQ---N--ESPLRQRSFAVKDE 75 (236)
Q Consensus 28 ~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~la~~~~---~--~~~~~QP~~~~~~~ 75 (236)
..+..|+.+|.|||||+.+++. .+.++|||+|. + ...+.||+...+++
T Consensus 14 ~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~~ 93 (607)
T TIGR01135 14 PILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATHGKPTEENAHPHTDEGGR 93 (607)
T ss_pred HHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCCCCCCccCCCCcCcCCCC
Confidence 5677899999999999999876 23468999992 2 13578999877788
Q ss_pred EEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC---CcHHHHhhccccceeEEEEECCC-CEEE
Q 026581 76 IFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---YPPNHVVGHLSGYFAFIVYDKST-STLF 145 (236)
Q Consensus 76 ~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~---~~~~~~l~~L~G~fa~vi~d~~~-~~l~ 145 (236)
++++|||+|||+++|+++| |+ +.+|+|++ +++|.++++.+. +++.+++++|+|+|||++||... ++++
T Consensus 94 ~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi--~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l~ 171 (607)
T TIGR01135 94 IAVVHNGIIENYAELREELEARGHVFVSDTDTEVI--AHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETLV 171 (607)
T ss_pred EEEEEecccCCHHHHHHHHHhCCCccccCCHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCEEE
Confidence 9999999999999999998 44 67888885 588988874332 45678999999999999999765 5699
Q ss_pred EEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcEEEEe
Q 026581 146 VASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFE 203 (236)
Q Consensus 146 ~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~ 203 (236)
++||+ |||||+.. ++.++||||.++|...+. .+.+||||+++.++++++..+.
T Consensus 172 ~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~~~~~~~~~~~~ 224 (607)
T TIGR01135 172 AARSG---SPLIVGLG-DGENFVASDVTALLPVTR-RVIYLEDGDIAILTRDGVRIYN 224 (607)
T ss_pred EEECC---CceEEEEC-CCeEEEEEChHHHHhhCC-EEEEeCCCeEEEEECCeeEEEe
Confidence 99994 99999997 568999999999998875 5789999999999877776655
No 31
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.96 E-value=7.2e-29 Score=208.58 Aligned_cols=121 Identities=23% Similarity=0.288 Sum_probs=103.9
Q ss_pred CCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEE
Q 026581 73 KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFV 146 (236)
Q Consensus 73 ~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~ 146 (236)
.+++++++||+|||+.+|+++| +. +.+|+|++ +++|++|| .+++++|+|+|||++||.+ ++|++
T Consensus 49 ~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvl--l~~y~~~G-------~~~l~~L~G~FAfai~D~~-~~L~l 118 (199)
T cd01909 49 SETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELL--LLLLTRLG-------LHAFRLAEGDFCFFIEDGN-GRLTL 118 (199)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHH--HHHHHHHh-------HHHHHHcCEEEEEEEEcCC-CEEEE
Confidence 3579999999999999999998 32 56777774 79999999 8999999999999999998 99999
Q ss_pred EEcCCCCccEEEEEecCCEEEEEeChhhhhhhcC-----------------CceEEeCCCeEEEEeCC-------cEEEE
Q 026581 147 ASDQFGKVPLYWGITADGHVAFADDADLLKGACG-----------------KSLASFPQGCFFSTAVG-------GLRSF 202 (236)
Q Consensus 147 aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~-----------------~~i~~lpPG~~~~~~~~-------~~~~y 202 (236)
+|||+|+|||||... +.++||||+++|.+++. +.|+.|||||++.++.. ..++|
T Consensus 119 aRDr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~~~g~~~~~~~~~~y 196 (199)
T cd01909 119 ATDHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLTFDGGSYGTAESRRT 196 (199)
T ss_pred EECCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEEEeeCCcccceEEEEEe
Confidence 999999999999886 57999999999976521 46999999999876533 26678
Q ss_pred eCC
Q 026581 203 ENP 205 (236)
Q Consensus 203 ~~~ 205 (236)
|.|
T Consensus 197 W~p 199 (199)
T cd01909 197 WTP 199 (199)
T ss_pred ecC
Confidence 876
No 32
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.96 E-value=8.3e-29 Score=215.43 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=128.5
Q ss_pred cchHHHHHHHhHhcCC-CCcceEEc------------------------------------CcEEEEEeeC---C--CCC
Q 026581 27 KTTSTALVDRFLQTNS-SAVSVQVG------------------------------------DNVTLAYTHQ---N--ESP 64 (236)
Q Consensus 27 ~~~~~~m~~~l~~RGp-d~~~~~~~------------------------------------~~~~la~~~~---~--~~~ 64 (236)
...+..|+.+|.|||+ |+.++... +..+|||+|. . ...
T Consensus 16 ~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~~igH~R~aT~g~~~~~ 95 (249)
T cd01907 16 GALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYHWIAHTRQPTNSAVWWY 95 (249)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEEEEEEEeccCCCCCCcc
Confidence 4677789999999999 99997763 3478999993 1 135
Q ss_pred CcceEEeeCCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcC-CC--C----------------
Q 026581 65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDR-AP--Y---------------- 119 (236)
Q Consensus 65 ~~QP~~~~~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~-g~--~---------------- 119 (236)
++||+.. ++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++...... +. +
T Consensus 96 n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi--~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~ 171 (249)
T cd01907 96 GAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVI--AYYLDLLLRKGGLPLEYYKHIIRMPEEERELL 171 (249)
T ss_pred CCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHH--HHHHHHHHHhCCChHHHHHHHhcCCHhHHHHH
Confidence 8899976 489999999999999999988 43 78888885 4666532111 11 1
Q ss_pred ---cHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhc---CCceEEeCCCeEEE
Q 026581 120 ---PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGAC---GKSLASFPQGCFFS 193 (236)
Q Consensus 120 ---~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~---~~~i~~lpPG~~~~ 193 (236)
++..+++.|+|+|||++++. +.++++|||+|.|||||+.. ++.++||||.++|...+ .+.+.++.||++++
T Consensus 172 ~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~ 248 (249)
T cd01907 172 LALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNAKVWEPRPGEYVI 248 (249)
T ss_pred HHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchheEecCCCCceEe
Confidence 23468899999999999985 67999999999999999998 57899999999999875 56789999999875
No 33
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.96 E-value=1.4e-28 Score=219.10 Aligned_cols=214 Identities=18% Similarity=0.242 Sum_probs=159.1
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEcC----------------------------c
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGD----------------------------N 52 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~----------------------------~ 52 (236)
|||||+-..+..-+.+ ..+....-.|.|||.++-++-..+ +
T Consensus 1 eCGv~Gi~~a~~~~~l-----------~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~ 69 (474)
T KOG0572|consen 1 ECGVFGIVAAGEASRL-----------PELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGS 69 (474)
T ss_pred CCcEEEEEecCccccC-----------cHHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccc
Confidence 8999998765333111 122223368999998887644322 2
Q ss_pred EEEEEee-C----CCCCCcceEEee--CCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHH--H-HhcC
Q 026581 53 VTLAYTH-Q----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYK--A-LRDR 116 (236)
Q Consensus 53 ~~la~~~-~----~~~~~~QP~~~~--~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~--~-~g~~ 116 (236)
.++||+| + ....+.|||+.. .+.++++|||++.|+++||+++ |+ +.+|+|+++.+-++. + +...
T Consensus 70 ~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~ 149 (474)
T KOG0572|consen 70 IGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVD 149 (474)
T ss_pred eeeeeeecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhccc
Confidence 5678888 1 123678999864 4569999999999999999998 33 889999865333332 1 1112
Q ss_pred CC---CcHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecC--C--EEEEEeChhhhhhhcCCceEEeCCC
Q 026581 117 AP---YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITAD--G--HVAFADDADLLKGACGKSLASFPQG 189 (236)
Q Consensus 117 g~---~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~d--g--~~~faSe~~aL~~~~~~~i~~lpPG 189 (236)
++ ..+..+++.++|.||+++... ++||++|||+|.|||+.|...+ | .+++|||.++|.....+..+++.||
T Consensus 150 ~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PG 227 (474)
T KOG0572|consen 150 APDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPG 227 (474)
T ss_pred CccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCc
Confidence 22 357899999999999999985 6799999999999999998643 2 7999999999999988889999999
Q ss_pred eEEEEeCCcEEEEeCCCCC-----------CcccCCCcceeeCceeEEe
Q 026581 190 CFFSTAVGGLRSFENPKNK-----------ITAVPAAEEEIWGATFKVE 227 (236)
Q Consensus 190 ~~~~~~~~~~~~y~~~~~~-----------~~~~~r~ds~i~g~~~~~~ 227 (236)
+++.+...+.++-|-.+.+ ..||+||||.|+|..-|+.
T Consensus 228 EiV~i~r~g~~s~~~~~~~~~~~~~~cIFEyvYFArpdSi~eG~sVY~~ 276 (474)
T KOG0572|consen 228 EIVEISRNGVKSVDIMKRPDENRMAFCIFEYVYFARPDSIFEGQSVYTV 276 (474)
T ss_pred eEEEEecCCceeeeeecCCccccccceeeeEEEeccCCceecccchHHH
Confidence 9998887776665543322 1399999999999987653
No 34
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.96 E-value=6e-28 Score=203.91 Aligned_cols=160 Identities=26% Similarity=0.382 Sum_probs=134.5
Q ss_pred HHHHHHhHhcCCCCcceEEcC---------------------------cEEEEEeeC---C--CCCCcceEEeeCCcEEE
Q 026581 31 TALVDRFLQTNSSAVSVQVGD---------------------------NVTLAYTHQ---N--ESPLRQRSFAVKDEIFC 78 (236)
Q Consensus 31 ~~m~~~l~~RGpd~~~~~~~~---------------------------~~~la~~~~---~--~~~~~QP~~~~~~~~~l 78 (236)
..|+..+.+||||+.++.... ..+|||+|. + ...+.||+....+++++
T Consensus 21 ~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~g~~~~~n~hPf~~~~~~~~~ 100 (220)
T cd00352 21 LRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIAL 100 (220)
T ss_pred HHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeecCCCCCCCCCCcCcCCCCEEE
Confidence 479999999999999977643 578999992 1 24789999876678999
Q ss_pred EEeeEEcchhhHHHHhC---C---CCCCchHHHHHHHHHHHhcCCC--CcHHHHhhccccceeEEEEECCCCEEEEEEcC
Q 026581 79 LFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAP--YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQ 150 (236)
Q Consensus 79 v~nG~I~N~~~L~~~lg---~---~~~d~e~~~~l~~~~~~g~~g~--~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~ 150 (236)
+|||+|+|+.+|++++. . ..+|+|++ +++|.+|+..+. +++.++++.++|.|+|+++|..+++++++||+
T Consensus 101 ~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~~l~~~rd~ 178 (220)
T cd00352 101 VHNGEIYNYRELREELEARGYRFEGESDSEVI--LHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARDR 178 (220)
T ss_pred EECcEEEcHHHHHHHHHHCCCeecCCCHHHHH--HHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEECCCCEEEEEECC
Confidence 99999999999998873 2 67888875 588988874332 44678999999999999999888999999999
Q ss_pred CCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEE
Q 026581 151 FGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFF 192 (236)
Q Consensus 151 ~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~ 192 (236)
+|.+||||+...++.++||||..++...+.+.+.++|||+++
T Consensus 179 ~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 179 FGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred CCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 999999999983468999999999998876679999999864
No 35
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.96 E-value=3.9e-28 Score=236.07 Aligned_cols=183 Identities=15% Similarity=0.215 Sum_probs=146.0
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEc------------------------------
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG------------------------------ 50 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~------------------------------ 50 (236)
|||||+-.-.+. -...+-.++.+|.|||+|+.|+...
T Consensus 24 MCGI~G~~~~~~-------------~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~ 90 (640)
T PTZ00295 24 CCGIVGYLGNED-------------ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLD 90 (640)
T ss_pred CCeEEEEEcCcc-------------hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhc
Confidence 999999752110 1345668999999999999886651
Q ss_pred ----CcEEEEEeeC---C--CCCCcceEEeeCCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhc
Q 026581 51 ----DNVTLAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRD 115 (236)
Q Consensus 51 ----~~~~la~~~~---~--~~~~~QP~~~~~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~ 115 (236)
+..+|||+|. + ...+.||+.+.+++++++|||+|+|+.+||++| |+ +.+|+|++ ++++.+.-.
T Consensus 91 ~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi--~~li~~~~~ 168 (640)
T PTZ00295 91 SHKNSTIGIAHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVI--ANLIGLELD 168 (640)
T ss_pred CCCCCcEEEEEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHH--HHHHHHHHh
Confidence 1247999992 2 236799998777899999999999999999988 44 78888885 577653322
Q ss_pred CCC---CcHHHHhhccccceeEEEEECC-CCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeE
Q 026581 116 RAP---YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCF 191 (236)
Q Consensus 116 ~g~---~~~~~~l~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~ 191 (236)
.|. +++.+++++|+|+|||++||.. .++|+++||+ |||||+.. ++.++||||.++|...+.+ +..++||++
T Consensus 169 ~g~~~~~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pGei 243 (640)
T PTZ00295 169 QGEDFQEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNE-YISLKDGEI 243 (640)
T ss_pred cCCCHHHHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcE-EEEeCCCeE
Confidence 221 4567899999999999999976 4899999996 99999997 5679999999999988875 667999999
Q ss_pred EEEeCCcEEEEe
Q 026581 192 FSTAVGGLRSFE 203 (236)
Q Consensus 192 ~~~~~~~~~~y~ 203 (236)
+.+++++++.|.
T Consensus 244 ~~i~~~~~~~~~ 255 (640)
T PTZ00295 244 AELSLENVNDLY 255 (640)
T ss_pred EEEECCeEEEEe
Confidence 999888888776
No 36
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.94 E-value=1.1e-26 Score=181.93 Aligned_cols=107 Identities=30% Similarity=0.533 Sum_probs=70.5
Q ss_pred CCCCcceEE-eeCCcEEEEEeeEEcchhhHHHHhC---C---CCCCchHHHHHHHHHH---HhcCCCCcHHHHhhccccc
Q 026581 62 ESPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKA---LRDRAPYPPNHVVGHLSGY 131 (236)
Q Consensus 62 ~~~~~QP~~-~~~~~~~lv~nG~I~N~~~L~~~lg---~---~~~d~e~~~~l~~~~~---~g~~g~~~~~~~l~~L~G~ 131 (236)
...+.||+. +.+++++++|||+|||+++|+++|. + +.+|+|+ ++++|++ |+ .+++++|+|.
T Consensus 9 ~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~--i~~~~~~~~~~~-------~~~~~~l~G~ 79 (125)
T PF13537_consen 9 SDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSEL--ILHLYEEYREWG-------EDFLKRLDGP 79 (125)
T ss_dssp ----------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHH--HHHHHHH---HG-------GGGGGT--EE
T ss_pred ccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHH--HHHHHHHHHHHH-------HHHHHhCCce
Confidence 456789999 5778899999999999999999983 2 5666666 4688886 77 8999999999
Q ss_pred eeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhh
Q 026581 132 FAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKG 177 (236)
Q Consensus 132 fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~ 177 (236)
|||++||+++++++++|||+|+|||||+..+++.++||||+++|.+
T Consensus 80 fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 80 FAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp EEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred EEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 9999999988899999999999999999984259999999999864
No 37
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.93 E-value=9.8e-25 Score=213.28 Aligned_cols=190 Identities=17% Similarity=0.259 Sum_probs=144.7
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEc------------------------------
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG------------------------------ 50 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~------------------------------ 50 (236)
|||||+-.-..-++ ...+ -...+-.-+.+|.|||.|+.|+.+.
T Consensus 1 mCGI~g~~~~~~~~------~~~~-~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~ 73 (680)
T PLN02981 1 MCGIFAYLNYNVPR------ERRF-ILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEV 73 (680)
T ss_pred CceEEEEEccCCcc------cccc-HHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhc
Confidence 99999966211000 0000 2356667899999999999886651
Q ss_pred ------------CcEEEEEee---CC--CCCCcceEEee-CCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHH
Q 026581 51 ------------DNVTLAYTH---QN--ESPLRQRSFAV-KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILV 106 (236)
Q Consensus 51 ------------~~~~la~~~---~~--~~~~~QP~~~~-~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~ 106 (236)
++++|||+| .+ ...+.||+... .+.++++|||+|+|+.+|+++| |+ +.+|+|++
T Consensus 74 ~~~~l~~~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi-- 151 (680)
T PLN02981 74 AETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVI-- 151 (680)
T ss_pred cccccccccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHH--
Confidence 136899998 12 23678999864 3679999999999999999998 44 78888885
Q ss_pred HHH----HHHHhcC-C--C--CcHHHHhhccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEec--C-----------
Q 026581 107 IEA----YKALRDR-A--P--YPPNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITA--D----------- 163 (236)
Q Consensus 107 l~~----~~~~g~~-g--~--~~~~~~l~~L~G~fa~vi~d~~~-~~l~~aRD~~G~rPLyy~~~~--d----------- 163 (236)
+++ |+.|+.. + . +++.+++++|+|+|||++++... ++++++||+ +||++|..+ +
T Consensus 152 ~~li~~~~~~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~ 228 (680)
T PLN02981 152 PKLAKFVFDKLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSE 228 (680)
T ss_pred HHHHHHHHHhcccccCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccc
Confidence 466 4555421 1 1 45678999999999999999664 899999995 999999872 1
Q ss_pred ----------CEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcEEEEe
Q 026581 164 ----------GHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLRSFE 203 (236)
Q Consensus 164 ----------g~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~ 203 (236)
+.+++|||.+||... .+.++.++||+++.+++++++.|.
T Consensus 229 ~~~~~~~~~~~~~~~aSe~~al~~~-~~~~~~l~~gei~~i~~~~~~~~~ 277 (680)
T PLN02981 229 GFLTKNRDKPKEFFLASDASAVVEH-TKRVLVIEDNEVVHLKDGGVGIYK 277 (680)
T ss_pred cccccccccCCcEEEEeCHHHHHHh-cCEEEEECCCeEEEEECCeEEEEe
Confidence 369999999999998 557999999999999988877775
No 38
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.92 E-value=4.6e-24 Score=208.13 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=116.4
Q ss_pred EEEEEee---CCC--CCCcceEEeeCCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHH----HHHHhcCC
Q 026581 53 VTLAYTH---QNE--SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEA----YKALRDRA 117 (236)
Q Consensus 53 ~~la~~~---~~~--~~~~QP~~~~~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~----~~~~g~~g 117 (236)
++|||+| .+. ..+.||+.+.+++++++|||+|||+.+||++| |+ +++|+|++ +++ |++||...
T Consensus 99 ~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi--~~li~~~~~~~g~~~ 176 (670)
T PTZ00394 99 VGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVI--SVLSEYLYTRKGIHN 176 (670)
T ss_pred EEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHH--HHHHHHHHHhcCCCC
Confidence 5788988 222 36789998888899999999999999999998 44 78899986 444 44443111
Q ss_pred C-CcHHHHhhccccceeEEEEECC-CCEEEEEEcCCCCccEEEEEecC--------------------CEEEEEeChhhh
Q 026581 118 P-YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITAD--------------------GHVAFADDADLL 175 (236)
Q Consensus 118 ~-~~~~~~l~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPLyy~~~~d--------------------g~~~faSe~~aL 175 (236)
. +++.+++++|+|+|||++.+.. .++|+++||+ +||++|..++ +.++|||+..||
T Consensus 177 ~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a~ 253 (670)
T PTZ00394 177 FADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNSF 253 (670)
T ss_pred HHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHHH
Confidence 1 4567999999999999998643 4899999997 9999999731 479999999999
Q ss_pred hhhcCCceEEeCCCeEEEEeCCcEEEEe
Q 026581 176 KGACGKSLASFPQGCFFSTAVGGLRSFE 203 (236)
Q Consensus 176 ~~~~~~~i~~lpPG~~~~~~~~~~~~y~ 203 (236)
...+. .+..|++|+++.+++++++-|.
T Consensus 254 ~~~t~-~~~~l~dg~~~~~~~~~~~~~~ 280 (670)
T PTZ00394 254 AEYTR-EVVFLEDGDIAHYCDGALRFYN 280 (670)
T ss_pred HHhhc-eEEEecCCeEEEEECCEEEEEe
Confidence 99986 5899999999999887665554
No 39
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.92 E-value=4.4e-24 Score=169.12 Aligned_cols=120 Identities=26% Similarity=0.415 Sum_probs=102.2
Q ss_pred CCCcce--EEcCcEEEEEeeC----CC-CCCcceEEeeCCcEEEEEeeEEcchhhHHHHhC---C---CCCCchHHHHHH
Q 026581 42 SSAVSV--QVGDNVTLAYTHQ----NE-SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L---AKSANEVILVIE 108 (236)
Q Consensus 42 pd~~~~--~~~~~~~la~~~~----~~-~~~~QP~~~~~~~~~lv~nG~I~N~~~L~~~lg---~---~~~d~e~~~~l~ 108 (236)
||..++ +..+.++|||+|. .. ..+.||+.+.+++++++|||+|+|+.+|+++++ + +.+|||++ ++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii--~~ 78 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEII--AA 78 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHH--HH
Confidence 566665 6677799999991 12 345599966678899999999999999999883 3 67888886 57
Q ss_pred HHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeC
Q 026581 109 AYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADD 171 (236)
Q Consensus 109 ~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe 171 (236)
+++++| .++++.|+|.|++++++...++++++||++|.|||||+.. ++.++||||
T Consensus 79 li~~~g-------~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 79 LIHRWG-------EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HHHHHH-------HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 888888 7899999999999999987899999999999999999998 578999998
No 40
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=5.9e-21 Score=181.16 Aligned_cols=181 Identities=18% Similarity=0.257 Sum_probs=145.1
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEc---------------------------CcE
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNV 53 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~ 53 (236)
||||++--....+ ....+.+-+++|-.||=|+.|+... +.+
T Consensus 1 MCGIvG~i~~~~~------------~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~ 68 (597)
T COG0449 1 MCGIVGYIGFLRE------------AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGV 68 (597)
T ss_pred CCcEEEEEcCCcc------------HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCce
Confidence 9999995422221 2356777899999999998774432 236
Q ss_pred EEEEee----C-CCCCCcceEEeeCCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCCC-CcH
Q 026581 54 TLAYTH----Q-NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-YPP 121 (236)
Q Consensus 54 ~la~~~----~-~~~~~~QP~~~~~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g~-~~~ 121 (236)
++||+| + ....+++|+.+ +++++||||.|.|+.+||++| |+ |++|||++ .|++.++-+.+. +++
T Consensus 69 gIgHTRWATHG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi--~hLi~~~~~~~~~~a~ 144 (597)
T COG0449 69 GIAHTRWATHGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVI--AHLLEEIYDTSLLEAV 144 (597)
T ss_pred eeeeccccCCCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHH--HHHHHHHHHhHHHHHH
Confidence 789999 1 23478899865 889999999999999999999 56 88888885 588865432222 567
Q ss_pred HHHhhccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCcEE
Q 026581 122 NHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGCFFSTAVGGLR 200 (236)
Q Consensus 122 ~~~l~~L~G~fa~vi~d~~~-~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~~~ 200 (236)
..++++|+|+||+++.|.+. ++|++||. | .||+.|.. +|..++||+..|+.....+ +..+.+|++..++.+++.
T Consensus 145 ~~~l~~l~Gsyal~~~~~~~p~~i~~ar~--~-sPL~iG~g-~~e~f~aSD~~a~l~~t~~-~~~l~dgd~~~~~~~~v~ 219 (597)
T COG0449 145 KKVLKRLEGSYALLCTHSDFPDELVAARK--G-SPLVIGVG-EGENFLASDVSALLNFTRR-FVYLEEGDIAKLTTDGVS 219 (597)
T ss_pred HHHHHHhcceeEEEEEecCCCCeEEEEcC--C-CCeEEEec-CCcceEecChhhhhhhhce-EEEeCCCCEEEEECCcEE
Confidence 89999999999999999886 79999998 3 99999998 6889999999999998874 889999999999888877
Q ss_pred EEe
Q 026581 201 SFE 203 (236)
Q Consensus 201 ~y~ 203 (236)
+.
T Consensus 220 -~~ 221 (597)
T COG0449 220 -IN 221 (597)
T ss_pred -Ee
Confidence 44
No 41
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.71 E-value=1.1e-16 Score=145.95 Aligned_cols=163 Identities=19% Similarity=0.225 Sum_probs=111.2
Q ss_pred CeeeeccCccCCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcce-EEcCcEEEE-------EeeCCCCCCcceEEee
Q 026581 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSV-QVGDNVTLA-------YTHQNESPLRQRSFAV 72 (236)
Q Consensus 1 m~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~-~~~~~~~la-------~~~~~~~~~~QP~~~~ 72 (236)
|||||++-....+ +. ......+|...+..||||.++- ......++. +.|+ -...||++.
T Consensus 1 MCGI~~s~~~~~~--l~--------~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG--~~t~Qpvv~- 67 (520)
T KOG0573|consen 1 MCGIFLSVDKDLA--LN--------SELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG--YLTKQPVVE- 67 (520)
T ss_pred CceEEEeecCCcc--cc--------ccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee--eeccCceec-
Confidence 9999998753333 11 2345678999999999998662 222211111 2222 367899875
Q ss_pred CCcEEEEEeeEEcchhhHHHHhCCCCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEEEcCCC
Q 026581 73 KDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFG 152 (236)
Q Consensus 73 ~~~~~lv~nG~I~N~~~L~~~lg~~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G 152 (236)
++++++.|||+|||... ++.+.+...+++.+...++. ..+.+.++.++|+|||++||.+.++||++||++|
T Consensus 68 d~~~vfl~NGeIyn~~~-------s~~~~d~~~l~~~l~~~~e~--~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~G 138 (520)
T KOG0573|consen 68 DDRYVFLFNGEIYNGEK-------SDTLFDTDILAEELSNLKES--GDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIG 138 (520)
T ss_pred ccceEEEecceeccCCC-------ccccchHHHHHHHHhcCCcc--ccHHHHHHhccCCceEEEEEccCcEEEEeccccc
Confidence 45589999999999653 23333333235666544321 4578999999999999999999999999999999
Q ss_pred CccEEEEEecCCEEEE-EeChhhhhhhcCCceEEeCCCe
Q 026581 153 KVPLYWGITADGHVAF-ADDADLLKGACGKSLASFPQGC 190 (236)
Q Consensus 153 ~rPLyy~~~~dg~~~f-aSe~~aL~~~~~~~i~~lpPG~ 190 (236)
+|+|.|+.++.+..++ +|.-. ..+.|.++||+-
T Consensus 139 RrSLly~~~~~~f~~~~st~g~-----~~~~i~e~~~~F 172 (520)
T KOG0573|consen 139 RRSLLYSLDPFNFSLVLSTVGT-----SGKLIYEVPPVF 172 (520)
T ss_pred ceeeeEEeccCceeEEeecccc-----CCccccccCchh
Confidence 9999999986553333 33322 234477999993
No 42
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.69 E-value=7.1e-16 Score=142.00 Aligned_cols=136 Identities=14% Similarity=0.158 Sum_probs=100.0
Q ss_pred cEEEEEee-CCC----CCCcceEEeeCCcEEEEEeeEEcchhhHHHHhC--------------------C---CCCCchH
Q 026581 52 NVTLAYTH-QNE----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--------------------L---AKSANEV 103 (236)
Q Consensus 52 ~~~la~~~-~~~----~~~~QP~~~~~~~~~lv~nG~I~N~~~L~~~lg--------------------~---~~~d~e~ 103 (236)
..+|+|+| +.. -..+||+. +++|||||+|+..+++.+. + +.|||++
T Consensus 202 ~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ 275 (413)
T cd00713 202 AFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSAS 275 (413)
T ss_pred EEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHH
Confidence 36788988 211 14679974 4899999999988776541 0 3788887
Q ss_pred HHHHHHHHHHhcCCC---CcHH-------------------------HHhhccccceeEEEEECCCCEEEEEEcCCCCcc
Q 026581 104 ILVIEAYKALRDRAP---YPPN-------------------------HVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVP 155 (236)
Q Consensus 104 ~~~l~~~~~~g~~g~---~~~~-------------------------~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rP 155 (236)
+ .++++-.-..|. +++. .+++.++|+||+++.|. +.++++|||+|.||
T Consensus 276 l--d~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRP 351 (413)
T cd00713 276 L--DNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRP 351 (413)
T ss_pred H--HHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcc
Confidence 4 344432211121 2222 56688999999999984 78999999999999
Q ss_pred EEEEEecCCEEEEEeChhhhhhhcCCceE---EeCCCeEEEEeCCc
Q 026581 156 LYWGITADGHVAFADDADLLKGACGKSLA---SFPQGCFFSTAVGG 198 (236)
Q Consensus 156 Lyy~~~~dg~~~faSe~~aL~~~~~~~i~---~lpPG~~~~~~~~~ 198 (236)
|+|+.++|+.+++|||..+|.. ..+.+. ++.||+++.++..+
T Consensus 352 l~~~~t~d~~~v~ASE~gal~~-~~~~V~~kg~l~PGe~v~id~~~ 396 (413)
T cd00713 352 ARYVITKDGLLIMSSEVGVVDV-PPEKVVEKGRLGPGEMLLVDLEE 396 (413)
T ss_pred eEEEEECCCEEEEEeCCcccCC-CcceeeecCCCCCCeEEEEECCC
Confidence 9999986668999999999965 444565 89999998886543
No 43
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.65 E-value=1.6e-15 Score=132.53 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=104.3
Q ss_pred cEEEEEeeC---C--CCCCcceEEeeCCcEEEEEeeEEcchhhHHHHh---C---C-CCCCchHHHHHHHHHHHh-cCC-
Q 026581 52 NVTLAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---G---L-AKSANEVILVIEAYKALR-DRA- 117 (236)
Q Consensus 52 ~~~la~~~~---~--~~~~~QP~~~~~~~~~lv~nG~I~N~~~L~~~l---g---~-~~~d~e~~~~l~~~~~~g-~~g- 117 (236)
..+|+|+|. + ...+.||+.. ++++++|||.|.|+.+|+..+ + . +.+|||+++ +++.+.. +.+
T Consensus 81 ~~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~--~li~~~l~~~~~ 156 (257)
T cd01908 81 PLVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAF--ALLLSRLLERDP 156 (257)
T ss_pred cEEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHH--HHHHHHHHhcCC
Confidence 367899992 1 2467899976 489999999999999999877 2 2 688889864 4454332 111
Q ss_pred ------CCcHHHHhhccc-----cceeEEEEECCCCEEEEEEcCCCCccEEEEEec-----------------CCEEEEE
Q 026581 118 ------PYPPNHVVGHLS-----GYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA-----------------DGHVAFA 169 (236)
Q Consensus 118 ------~~~~~~~l~~L~-----G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~-----------------dg~~~fa 169 (236)
.+++.++++.|+ |.|+|++.|. ++|+++||+. .+||||.... ++.++||
T Consensus 157 ~~~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vva 233 (257)
T cd01908 157 LDPAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVA 233 (257)
T ss_pred cchHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEE
Confidence 145778889999 7888888875 7899999987 7999999863 3589999
Q ss_pred eChhhhhhhcCCceEEeCCCeEEEEeCC
Q 026581 170 DDADLLKGACGKSLASFPQGCFFSTAVG 197 (236)
Q Consensus 170 Se~~aL~~~~~~~i~~lpPG~~~~~~~~ 197 (236)
||..+... .|+++|||++++++++
T Consensus 234 SE~l~~~~----~w~~v~~ge~~~i~~~ 257 (257)
T cd01908 234 SEPLTDDE----GWTEVPPGELVVVSEG 257 (257)
T ss_pred eCCCCCCC----CceEeCCCEEEEEeCC
Confidence 99987643 5999999999988653
No 44
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.63 E-value=4.3e-15 Score=129.53 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=100.2
Q ss_pred EEEEEeeC---C--C-CCCcceEEeeCCcEEEEEeeEEcchh-----hHHHHh---C--C--CCCCchHHHHHHHHHHHh
Q 026581 53 VTLAYTHQ---N--E-SPLRQRSFAVKDEIFCLFEGALDNLG-----SLRQQY---G--L--AKSANEVILVIEAYKALR 114 (236)
Q Consensus 53 ~~la~~~~---~--~-~~~~QP~~~~~~~~~lv~nG~I~N~~-----~L~~~l---g--~--~~~d~e~~~~l~~~~~~g 114 (236)
.++||+|. + . ..+.|||.. ++++++|||.|.|++ +|+++| + . +.+|||+++ +++.+..
T Consensus 84 ~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~--~li~~~~ 159 (251)
T TIGR03442 84 CVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLF--ALLLNRL 159 (251)
T ss_pred eEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHH--HHHHHHH
Confidence 56889981 2 1 268999974 789999999999997 565555 2 1 688899754 4444332
Q ss_pred -cCCC----CcHHHHhhccccc-------eeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCC-
Q 026581 115 -DRAP----YPPNHVVGHLSGY-------FAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGK- 181 (236)
Q Consensus 115 -~~g~----~~~~~~l~~L~G~-------fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~- 181 (236)
+..+ +++.++++.|.|. |+|++.|. ++|++.||+. ||||+..+ +.++||||. | ...
T Consensus 160 ~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~~-~~~vvASEp--l---~~~~ 228 (251)
T TIGR03442 160 LENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKDP-EGVIVASEP--Y---DDDP 228 (251)
T ss_pred hhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEcC-CEEEEEeCC--c---CCCC
Confidence 2111 3456788888888 99999984 7999999975 99999974 579999998 2 333
Q ss_pred ceEEeCCCeEEEEeCCcEEE
Q 026581 182 SLASFPQGCFFSTAVGGLRS 201 (236)
Q Consensus 182 ~i~~lpPG~~~~~~~~~~~~ 201 (236)
.|+++|||+++++++++++.
T Consensus 229 ~W~~v~pge~v~i~~~~v~~ 248 (251)
T TIGR03442 229 GWQDVPDRHLLSVSEDDVTI 248 (251)
T ss_pred CceEeCCCeEEEEECCcEEE
Confidence 79999999999998877553
No 45
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.47 E-value=7.2e-13 Score=123.06 Aligned_cols=182 Identities=18% Similarity=0.277 Sum_probs=120.0
Q ss_pred CeeeeccC--cc-CCchhhccCCCCCCCccchHHHHHHHhHhcCCCCcceEEcC--------------------------
Q 026581 1 MLGVFSSA--IV-SPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGD-------------------------- 51 (236)
Q Consensus 1 m~g~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------- 51 (236)
|||||+-. +. ++..++ -.++-+-+++|-.||=|+.|+.+.+
T Consensus 1 MCGIF~Y~N~l~~R~R~eI----------id~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~ 70 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEI----------IDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQN 70 (670)
T ss_pred CcceeeeeccccCCcHHHH----------HHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcC
Confidence 99999876 21 221111 1233445678888987876644332
Q ss_pred ---------cEEEEEee-----CCCCCCcceEEee-CCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHH
Q 026581 52 ---------NVTLAYTH-----QNESPLRQRSFAV-KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAY 110 (236)
Q Consensus 52 ---------~~~la~~~-----~~~~~~~QP~~~~-~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~ 110 (236)
++++||+| ...+.+.+|+-+. .+.++++|||.|.||++|+..| |+ +++|+|.+. .++
T Consensus 71 ~~l~~~f~sH~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEcia--KL~ 148 (670)
T KOG1268|consen 71 LNLDEKFISHCGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIA--KLY 148 (670)
T ss_pred cccceeeeeeeeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHH--HHH
Confidence 26789998 2345778998753 5679999999999999999888 54 788888753 444
Q ss_pred HHHhcCCC------CcHHHHhhccccceeEEEEECC-CCEEEEEEcCCCCccEEEEEec---------------------
Q 026581 111 KALRDRAP------YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITA--------------------- 162 (236)
Q Consensus 111 ~~~g~~g~------~~~~~~l~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPLyy~~~~--------------------- 162 (236)
+..-+.-+ +-+..++++|+|+|++++-... .+++.+.|+ | .||..|...
T Consensus 149 ~~~~D~~~~~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rr--g-SPlliGvKs~~kls~d~~~V~y~~~~~~~~ 225 (670)
T KOG1268|consen 149 KHIYDTSPEDLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARK--G-SPLLIGVKSKTKLSVDFFPVEYGDTQEVSY 225 (670)
T ss_pred HHHHhhCCCcccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeecc--C-Ccceeeecccccccccceeeeccccceecc
Confidence 42212221 1146788999999999987654 489999998 4 777777421
Q ss_pred ----------------CC--EEEEEeChhhhhhhcCCceEEeCCCeEEEEeCCc
Q 026581 163 ----------------DG--HVAFADDADLLKGACGKSLASFPQGCFFSTAVGG 198 (236)
Q Consensus 163 ----------------dg--~~~faSe~~aL~~~~~~~i~~lpPG~~~~~~~~~ 198 (236)
+. .|+|||+..++..+..+ +.-+..+.+..+.+|+
T Consensus 226 ~~~~~~d~~~~~~~~~~~~vEff~aSDasa~IEhT~r-V~flEDddia~v~dG~ 278 (670)
T KOG1268|consen 226 LKLNKTDTKASLHFLAGSPVEFFTASDASALIEHTKR-VLFLEDDDIAHVSDGE 278 (670)
T ss_pred cccCCcccccccccccCCceEEEEecCcchhheecce-eEEeccCcEEEEecCc
Confidence 11 56777777777666554 4455556665555554
No 46
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.42 E-value=1.1e-12 Score=119.89 Aligned_cols=114 Identities=23% Similarity=0.232 Sum_probs=77.5
Q ss_pred EcCcEEEEEee-C-C---CCCCcceEEeeCCcEEEEEeeEEcchhhHHHHh---CC---C----------------CCCc
Q 026581 49 VGDNVTLAYTH-Q-N---ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---A----------------KSAN 101 (236)
Q Consensus 49 ~~~~~~la~~~-~-~---~~~~~QP~~~~~~~~~lv~nG~I~N~~~L~~~l---g~---~----------------~~d~ 101 (236)
+.+..+|+|+| + + .-..+||+. +++|||+|.|...+++.+ +. + .|||
T Consensus 193 ~~s~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS 266 (361)
T PF00310_consen 193 FKSHFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDS 266 (361)
T ss_dssp EEBSEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HH
T ss_pred ccceEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChH
Confidence 44458899999 2 1 125789986 899999999999998886 22 3 7888
Q ss_pred hHHHHHHHHHHHhcCC------------------C----------CcHHHHhhccccceeEEEEECCCCEEEEEEcCCCC
Q 026581 102 EVILVIEAYKALRDRA------------------P----------YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (236)
Q Consensus 102 e~~~~l~~~~~~g~~g------------------~----------~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (236)
|++ ..+++..-..+ . +.+..+++.++|+|++++.|. +.++++|||.|.
T Consensus 267 ~~l--~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GL 342 (361)
T PF00310_consen 267 EVL--DNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGL 342 (361)
T ss_dssp HHH--HHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--
T ss_pred HHH--HHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCC
Confidence 875 33443222222 0 113466788999999999975 679999999999
Q ss_pred ccEEEEEecCCEEEEEeCh
Q 026581 154 VPLYWGITADGHVAFADDA 172 (236)
Q Consensus 154 rPLyy~~~~dg~~~faSe~ 172 (236)
||+.|+.++|+.+++|||.
T Consensus 343 RP~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 343 RPLRYGITEDGLVVLASEA 361 (361)
T ss_dssp S--EEEEETTCEEEEESST
T ss_pred cceEEEEECCCEEEEEeCC
Confidence 9999999977889999984
No 47
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.08 E-value=1.9e-09 Score=111.30 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=62.5
Q ss_pred HhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCceE--EeCCCeEEEEeCC
Q 026581 124 VVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLA--SFPQGCFFSTAVG 197 (236)
Q Consensus 124 ~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~i~--~lpPG~~~~~~~~ 197 (236)
+++-++|+||+++.|. +.+++.|||+|.|||.|+.++|+.+++|||..++.....+.++ ++.||+++.++..
T Consensus 332 lmEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id~~ 405 (1485)
T PRK11750 332 HMEPWDGPAGIVMTDG--RYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVIDTR 405 (1485)
T ss_pred hcccCCCCEEEEEEeC--CEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEeCC
Confidence 3445799999999984 7999999999999999999877789999999999877777777 9999999888653
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.87 E-value=2.4e-08 Score=88.17 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=67.3
Q ss_pred EEEEEeeC-----CCCCCcceEEee--CCcEEEEEeeEEcchhhHHHH-hCC-CCCCchHHHHHHHHHHHhcCC---C--
Q 026581 53 VTLAYTHQ-----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQ-YGL-AKSANEVILVIEAYKALRDRA---P-- 118 (236)
Q Consensus 53 ~~la~~~~-----~~~~~~QP~~~~--~~~~~lv~nG~I~N~~~L~~~-lg~-~~~d~e~~~~l~~~~~~g~~g---~-- 118 (236)
..|+|+|. ....+.|||... .++.+++|||.|.+.+.++.. +.. ..+|||.+++ .++....+.+ .
T Consensus 73 ~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~~~~~G~TDSE~~F~-lll~~l~~~~~~~~~~ 151 (271)
T PF13230_consen 73 LFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDRYQPVGTTDSEHAFC-LLLDQLRDRGPDAPPA 151 (271)
T ss_dssp EEEEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHHHT--S--HHHHHHH-HHHHTTTTT-HH--HH
T ss_pred EEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccccccCCCcHHHHHHH-HHHHHHHHhCCccccc
Confidence 46889982 123688999853 357899999999998766522 222 6889998753 2333221111 1
Q ss_pred -----CcHHHHhhccc--cceeEEEEECCCCEEEEEEcC----CCCccEE-------------EE---EecCCEEEEEeC
Q 026581 119 -----YPPNHVVGHLS--GYFAFIVYDKSTSTLFVASDQ----FGKVPLY-------------WG---ITADGHVAFADD 171 (236)
Q Consensus 119 -----~~~~~~l~~L~--G~fa~vi~d~~~~~l~~aRD~----~G~rPLy-------------y~---~~~dg~~~faSe 171 (236)
..+.++.+.+. |.+.|++.|. +.|++.|+. .-+++.+ .. ...+..++||||
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSe 229 (271)
T PF13230_consen 152 LEELFEALRELAKEINEYGSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASE 229 (271)
T ss_dssp HHHHHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEESS
T ss_pred HHHHHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEec
Confidence 12345555555 6788888885 699999982 1122211 00 112347888888
Q ss_pred hhhhhhhcCCceEEeCCCeEEEEeCCcEEEEeCC
Q 026581 172 ADLLKGACGKSLASFPQGCFFSTAVGGLRSFENP 205 (236)
Q Consensus 172 ~~aL~~~~~~~i~~lpPG~~~~~~~~~~~~y~~~ 205 (236)
.=. ....|.++|+|++++++.|++..-..+
T Consensus 230 PLt----~~e~W~~vp~g~~l~~~~G~v~~~~~~ 259 (271)
T PF13230_consen 230 PLT----DDEDWEPVPPGSLLVFRDGEVVARSKP 259 (271)
T ss_dssp --------SS--EE--SSEEEE------------
T ss_pred cCC----CCCCeEEcCCCcEEEEecccccccccc
Confidence 543 234699999999999998875544433
No 49
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=97.98 E-value=0.00035 Score=57.46 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=74.0
Q ss_pred CcEEEEEeeEEcchhhHHHHhCC------CCCCchHHHHHHHHHHHhcCCCCcHHHHhhccccceeEEEEECCCCEEEEE
Q 026581 74 DEIFCLFEGALDNLGSLRQQYGL------AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147 (236)
Q Consensus 74 ~~~~lv~nG~I~N~~~L~~~lg~------~~~d~e~~~~l~~~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~a 147 (236)
.+-..-.-|.|||..-|+.-.|+ .-+|.|++ +.++.+.| ..++.--+|.|+|.+=|+ +++|.+.
T Consensus 47 ~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL--~~~~~~lG-------~~aLsLAEGdfcffiE~k-ng~L~l~ 116 (201)
T PF09147_consen 47 ERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELL--YTIFTRLG-------NSALSLAEGDFCFFIEDK-NGELTLI 116 (201)
T ss_dssp TTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHH--HHHHHHH--------GGGGGG--SSEEEEEEET-TSEEEEE
T ss_pred cCccEEEEEEeccHHHHHHhhheeeccceeeccHHHH--HHHHHHhh-------hhhhhhhcCceEEEEecC-CCcEEEE
Confidence 34456667999999988776664 35666764 56788888 789999999999999876 6899999
Q ss_pred EcCCCCccEEEEEecCCEEEEEeChhhhhhh-------------------------cCCceEEeCCCeEEEEe
Q 026581 148 SDQFGKVPLYWGITADGHVAFADDADLLKGA-------------------------CGKSLASFPQGCFFSTA 195 (236)
Q Consensus 148 RD~~G~rPLyy~~~~dg~~~faSe~~aL~~~-------------------------~~~~i~~lpPG~~~~~~ 195 (236)
.|+-|..|+|.-.+ +..++...+|-+-.. +.+.+..+.||.+-+.+
T Consensus 117 Tds~G~~pv~lV~~--~~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na~RlkPGsin~l~ 187 (201)
T PF09147_consen 117 TDSRGFNPVYLVQS--KFIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNAQRLKPGSINVLT 187 (201)
T ss_dssp E-SSSSS-EEEEES--SSEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTEEEE-SSEEEEEE
T ss_pred ecCCCCceEEEEec--CceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccceecCCCceEEEE
Confidence 99999999998876 357887776654332 22578899999985553
No 50
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00025 Score=64.90 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=89.6
Q ss_pred CcEEEEEee-CC-C---CCCcceEEeeCCcEEEEEeeEEcchhhHHHHh---CC---CCCCchHHHHHHHHHHHhcCC--
Q 026581 51 DNVTLAYTH-QN-E---SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRA-- 117 (236)
Q Consensus 51 ~~~~la~~~-~~-~---~~~~QP~~~~~~~~~lv~nG~I~N~~~L~~~l---g~---~~~d~e~~~~l~~~~~~g~~g-- 117 (236)
+..+|+|+| +. . -..+||+- .++|||||.++...++.+ +. +.+|+|.+. .++......+
T Consensus 202 s~~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a--~l~p~~~~~~sD 273 (371)
T COG0067 202 SAIALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLA--KLLPILMRGGSD 273 (371)
T ss_pred eeEEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHHH--HHHHHhcccCCc
Confidence 347788998 21 1 14578863 469999999998776665 32 777877642 3332110000
Q ss_pred --------------CCcHHHHhhccccceeEEEEECC-CCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCCc
Q 026581 118 --------------PYPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKS 182 (236)
Q Consensus 118 --------------~~~~~~~l~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~~ 182 (236)
..+ ..-...+.|+||++.-... .+...+.+|+.+.+|.+-|-. +..|.++|+..|++..++
T Consensus 274 s~~~dn~lE~l~~~G~~-l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrng-- 349 (371)
T COG0067 274 SASLDNALELLLLGGRD-LYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRNG-- 349 (371)
T ss_pred chhhhHHHHHHHhcCcC-chhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccCC--
Confidence 011 2344678899998876422 367889999999999999987 568999999999876543
Q ss_pred eEEeCCCeEEEEeCCcE
Q 026581 183 LASFPQGCFFSTAVGGL 199 (236)
Q Consensus 183 i~~lpPG~~~~~~~~~~ 199 (236)
+.|+.|++.+++.+
T Consensus 350 ---Lrp~Ry~~t~d~~v 363 (371)
T COG0067 350 ---LRPARYWITKDGEV 363 (371)
T ss_pred ---CCcceEEEecCCEE
Confidence 67777776666543
No 51
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.49 E-value=0.0018 Score=56.70 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=33.4
Q ss_pred EEEEEeeC---C--CCCCcceEEee--CCcEEEEEeeEEcchhhH-HHHhC-CCCCCchH
Q 026581 53 VTLAYTHQ---N--ESPLRQRSFAV--KDEIFCLFEGALDNLGSL-RQQYG-LAKSANEV 103 (236)
Q Consensus 53 ~~la~~~~---~--~~~~~QP~~~~--~~~~~lv~nG~I~N~~~L-~~~lg-~~~~d~e~ 103 (236)
..++|+|. + ...+.||++.+ ...++++|||.|.+++.+ ...+. ...+|+|.
T Consensus 72 ~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~~~~~~~~~~~tds~~ 131 (252)
T COG0121 72 LVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEGRKLEPVGYTDSEA 131 (252)
T ss_pred EEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccccccccCCCCcchHHH
Confidence 67899992 1 23678999865 235678999999999873 33332 13455554
No 52
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=89.17 E-value=1.8 Score=45.59 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=47.4
Q ss_pred hccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChhhhhhhcCC--ceEEeCCCeEEEEe
Q 026581 126 GHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGK--SLASFPQGCFFSTA 195 (236)
Q Consensus 126 ~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~aL~~~~~~--~i~~lpPG~~~~~~ 195 (236)
+--+|+--+.+-|. +.+-+.=||.|.||-=|+.+.|+.++.|||.-.+.-...+ .--.+.||.++.++
T Consensus 408 EpWDGPALl~FsDG--ry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD 477 (2142)
T KOG0399|consen 408 EPWDGPALLTFSDG--RYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVD 477 (2142)
T ss_pred CCCCCceEEEecCC--ceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEE
Confidence 44567655555553 5677788999999998888878899999997554322111 12468999987774
No 53
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=74.19 E-value=6.3 Score=36.48 Aligned_cols=49 Identities=27% Similarity=0.263 Sum_probs=42.5
Q ss_pred HHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEeChh
Q 026581 123 HVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDAD 173 (236)
Q Consensus 123 ~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~dg~~~faSe~~ 173 (236)
.+..-.+|.=+.++.|. +.+-+.||+.|.||-=|..++|+.++++||..
T Consensus 322 ~l~epwdGpa~~~f~dg--se~gA~ldrngLrp~Ry~~t~d~~vv~~se~g 370 (371)
T COG0067 322 ALMEPWDGPADIVFTDG--SEEGAILDRNGLRPARYWITKDGEVVVASEAG 370 (371)
T ss_pred hCCCCccCCcceeEEee--eeeeeeeccCCCCcceEEEecCCEEEEEEecc
Confidence 45677889989999986 68899999999999999998889999999863
No 54
>PF10736 DUF2527: Protein of unknown function (DUF2627) ; InterPro: IPR019672 This entry represents small proteins with unknown function and appear to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence. Some proteins are annotated as YobF and may be involved in stress responses in E. coli.
Probab=59.13 E-value=2.9 Score=25.18 Aligned_cols=9 Identities=44% Similarity=0.866 Sum_probs=7.5
Q ss_pred CeeeeccCc
Q 026581 1 MLGVFSSAI 9 (236)
Q Consensus 1 m~g~~~~~~ 9 (236)
|||||+..+
T Consensus 1 M~GIFSKE~ 9 (38)
T PF10736_consen 1 MNGIFSKEV 9 (38)
T ss_pred CcccccHhh
Confidence 899998874
No 55
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=50.63 E-value=24 Score=24.09 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=19.8
Q ss_pred eeEEEEECCCCEEEEEEcCCCC--ccEEEE
Q 026581 132 FAFIVYDKSTSTLFVASDQFGK--VPLYWG 159 (236)
Q Consensus 132 fa~vi~d~~~~~l~~aRD~~G~--rPLyy~ 159 (236)
+.-+.+|...+++++..|. |+ |||+.-
T Consensus 33 ~vsi~~~~~~~ei~I~tD~-GR~~RPL~vV 61 (63)
T PF04566_consen 33 EVSIVYDIREKEIRINTDA-GRLCRPLFVV 61 (63)
T ss_dssp TSEEEEETTTTEEEEE-SS-CEEEEEEEEE
T ss_pred eeEEEEeccCCEEEEEccC-CcccceeEEe
Confidence 3345688888999999995 84 888763
No 56
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=44.63 E-value=2.1e+02 Score=24.85 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=0.0
Q ss_pred eeEEEEECCCCEEEEEEcCCCCcc-EEEEEec---CCEEEEEeChhhh----hhhcCCceEEeCC-CeEEEEe-------
Q 026581 132 FAFIVYDKSTSTLFVASDQFGKVP-LYWGITA---DGHVAFADDADLL----KGACGKSLASFPQ-GCFFSTA------- 195 (236)
Q Consensus 132 fa~vi~d~~~~~l~~aRD~~G~rP-Lyy~~~~---dg~~~faSe~~aL----~~~~~~~i~~lpP-G~~~~~~------- 195 (236)
|=-+.||++++++++++. ++| ..|.... +..+.++-..... ....-..+.--|. |++++..
T Consensus 120 ~EGla~D~~~~~L~v~kE---~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~ 196 (248)
T PF06977_consen 120 FEGLAYDPKTNRLFVAKE---RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLL 196 (248)
T ss_dssp -EEEEEETTTTEEEEEEE---SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEEcCCCCEEEEEeC---CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEE
Q ss_pred ----CCcEEEEeCCCCCCc----ccCCCcce---eeCceeEEeCcccc
Q 026581 196 ----VGGLRSFENPKNKIT----AVPAAEEE---IWGATFKVEGPAVL 232 (236)
Q Consensus 196 ----~~~~~~y~~~~~~~~----~~~r~ds~---i~g~~~~~~~~~~~ 232 (236)
+|++.++........ -++.|.+. =+| +-|++|+|||
T Consensus 197 ~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvsEpNl 243 (248)
T PF06977_consen 197 ELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIVSEPNL 243 (248)
T ss_dssp EE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTE
T ss_pred EECCCCCEEEEEEeCCcccCcccccCCccEEEECCCC-CEEEEcCCce
No 57
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=34.22 E-value=17 Score=28.79 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=18.2
Q ss_pred ccceeEEEEECCCCEEEEEEcCCCCccEE
Q 026581 129 SGYFAFIVYDKSTSTLFVASDQFGKVPLY 157 (236)
Q Consensus 129 ~G~fa~vi~d~~~~~l~~aRD~~G~rPLy 157 (236)
.|.|++++++. ++++-..+ .|++|||
T Consensus 10 e~~~S~Vv~~~--~~i~t~~~-rGv~pL~ 35 (134)
T PF08973_consen 10 EENYSCVVLKD--GEIRTSDG-RGVKPLY 35 (134)
T ss_dssp HTT-SEEEESS--SEEEEE---STTHHHH
T ss_pred hCCceEEEEeC--CEEEEeCC-CChHHHH
Confidence 36799999974 56777666 4999998
No 58
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=28.30 E-value=39 Score=27.53 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.3
Q ss_pred CcEEEEEeeEEcchhhHHH
Q 026581 74 DEIFCLFEGALDNLGSLRQ 92 (236)
Q Consensus 74 ~~~~lv~nG~I~N~~~L~~ 92 (236)
+++.+|+||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999987754
No 59
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=28.14 E-value=64 Score=24.64 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.5
Q ss_pred cHHHHhhccccceeEEEEECCCCEE
Q 026581 120 PPNHVVGHLSGYFAFIVYDKSTSTL 144 (236)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l 144 (236)
.+.+++...+|.|+|..|-.++..+
T Consensus 73 glVDFpa~~Ng~~~~lCWK~DE~~i 97 (123)
T COG4911 73 GLVDFPAIINGKPAFLCWKIDENDI 97 (123)
T ss_pred ccccchhhhCCceEEEEEecCCcce
Confidence 3578999999999999998766554
No 60
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=27.94 E-value=40 Score=27.47 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.3
Q ss_pred CcEEEEEeeEEcchhhHHH
Q 026581 74 DEIFCLFEGALDNLGSLRQ 92 (236)
Q Consensus 74 ~~~~lv~nG~I~N~~~L~~ 92 (236)
+++.+|+||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999987754
No 61
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=25.44 E-value=48 Score=24.25 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=15.8
Q ss_pred EEEEcCCCCccEEEEEecCC
Q 026581 145 FVASDQFGKVPLYWGITADG 164 (236)
Q Consensus 145 ~~aRD~~G~rPLyy~~~~dg 164 (236)
-..++.+|++|||-|...|+
T Consensus 27 ~~~~~e~gIk~lyrGvskdD 46 (86)
T PF12594_consen 27 QAMHKEFGIKSLYRGVSKDD 46 (86)
T ss_pred HHHHHhcCCeEEEEecccCC
Confidence 34567899999999997654
No 62
>COG4315 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.55 E-value=72 Score=24.91 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=24.0
Q ss_pred hhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEe
Q 026581 125 VGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGIT 161 (236)
Q Consensus 125 l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~ 161 (236)
-.+-.|.|+++.-+ .++.--+.| | +|||+...
T Consensus 86 ~dka~Gdysii~Rk--DGt~QWa~d--G-kPLY~w~k 117 (138)
T COG4315 86 ADKASGDYSIIARK--DGTKQWAYD--G-KPLYLWVK 117 (138)
T ss_pred ccccCCCeeeEEec--CchhhhhcC--C-ceeEEEee
Confidence 35678999988875 456666677 5 99998875
No 63
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.31 E-value=1.4e+02 Score=22.37 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=19.5
Q ss_pred EEEEEeChhhhhhhcCCceEEeCC--CeEEEEeCCcEEEEe
Q 026581 165 HVAFADDADLLKGACGKSLASFPQ--GCFFSTAVGGLRSFE 203 (236)
Q Consensus 165 ~~~faSe~~aL~~~~~~~i~~lpP--G~~~~~~~~~~~~y~ 203 (236)
-+++|+..-.--.+.. -|.++-| |-+|+.++|..++|-
T Consensus 65 PvyIs~~QyeaWKHTq-LIIDVVpGRGGmFSLdng~E~RFL 104 (116)
T COG3564 65 PVYISGPQYEAWKHTQ-LIIDVVPGRGGMFSLDNGREKRFL 104 (116)
T ss_pred EEEecCcHHhhhhccE-EEEEEecCCCceeEccCCcceeee
Confidence 3455444333333443 3445544 567888776555553
No 64
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.75 E-value=4.2e+02 Score=23.94 Aligned_cols=76 Identities=24% Similarity=0.443 Sum_probs=45.8
Q ss_pred HhhccccceeEEEEECCCCEEEEEEc-CCCCccEEEEE---ecCCEEEEEeChhhhhhh---------------------
Q 026581 124 VVGHLSGYFAFIVYDKSTSTLFVASD-QFGKVPLYWGI---TADGHVAFADDADLLKGA--------------------- 178 (236)
Q Consensus 124 ~l~~L~G~fa~vi~d~~~~~l~~aRD-~~G~rPLyy~~---~~dg~~~faSe~~aL~~~--------------------- 178 (236)
++.+=-|.|+.+ +|.+++++..-.. +-|+ -|||. +.||.+.++||...-..-
T Consensus 21 afaRRPG~~~~v-~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~ 97 (305)
T PF07433_consen 21 AFARRPGTFALV-FDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH 97 (305)
T ss_pred EEEeCCCcEEEE-EEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC
Confidence 445566888754 5766665443333 2242 47774 457899999997542110
Q ss_pred --cCCceEEeCCCeEEEEeCCcEEEE
Q 026581 179 --CGKSLASFPQGCFFSTAVGGLRSF 202 (236)
Q Consensus 179 --~~~~i~~lpPG~~~~~~~~~~~~y 202 (236)
...++.-.|.|..+++-+|++.+-
T Consensus 98 GIGPHel~l~pDG~tLvVANGGI~Th 123 (305)
T PF07433_consen 98 GIGPHELLLMPDGETLVVANGGIETH 123 (305)
T ss_pred CcChhhEEEcCCCCEEEEEcCCCccC
Confidence 012466677787878878887765
No 65
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=20.74 E-value=55 Score=22.24 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=16.7
Q ss_pred cceEEeeCCcEEEEEeeEEcch
Q 026581 66 RQRSFAVKDEIFCLFEGALDNL 87 (236)
Q Consensus 66 ~QP~~~~~~~~~lv~nG~I~N~ 87 (236)
.|-++..++.+.+-|||.+|-.
T Consensus 30 S~~Lfgg~~~i~I~H~Ga~Y~l 51 (63)
T COG4256 30 SQTLFGGDGKIIIDHDGAEYLL 51 (63)
T ss_pred hhhcccCCCeEEEecCCceEEE
Confidence 3444556788999999999864
Done!