BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026582
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1A4Q2|PRXD1_BOVIN Prolyl-tRNA synthetase associated domain-containing protein 1
OS=Bos taurus GN=PRORSD1 PE=2 SV=1
Length = 171
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 8 FKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISLNTNDLDKFLK 65
KV G TP AL + DV +LD F E+ +FHP++N ++ L+ D F+K
Sbjct: 99 LKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLTFVK 157
Query: 66 SIGRDPAYVDLEAN 79
+ G DP ++ + N
Sbjct: 158 NTGHDPIILNFDKN 171
>sp|A6NEY8|PRXD1_HUMAN Putative prolyl-tRNA synthetase associated domain-containing
protein 1 OS=Homo sapiens GN=PRORSD1P PE=5 SV=3
Length = 169
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 8 FKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISLNTNDLDKFLK 65
KV G TP AL + DV +LD F E+ +FHP++N ++ L+ D F+K
Sbjct: 99 LKVGQGCATPLALFCDGG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLTFVK 157
Query: 66 SIGRDPAYVDLE 77
G DP ++ +
Sbjct: 158 MTGHDPIILNFD 169
>sp|Q6NRL0|PRXD1_XENLA Prolyl-tRNA synthetase associated domain-containing protein 1
OS=Xenopus laevis GN=prorsd1p PE=2 SV=1
Length = 168
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 8 FKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISLNTNDLDKFLK 65
KV G TP AL + DV +LD F ER +FHP++N ++ + + FLK
Sbjct: 98 LKVGQGCATPLALFCDRG-DVQFVLDAQFLEGGYERVYFHPMTNAATLGMTPQEFVTFLK 156
Query: 66 SIGRDPAYVDLE 77
G DP + +
Sbjct: 157 KTGHDPIIIHFD 168
>sp|Q9D820|PRXD1_MOUSE Prolyl-tRNA synthetase associated domain-containing protein 1
OS=Mus musculus GN=Prorsd1 PE=2 SV=1
Length = 169
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 8 FKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISLNTNDLDKFLK 65
KV G TP +L + DV +LD F E+ +FHP++N ++ L+ D F+K
Sbjct: 99 LKVGQGCATPLSLFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLIFVK 157
Query: 66 SIGRDPAYVDLE 77
+ G DP ++ +
Sbjct: 158 ATGHDPIILNFD 169
>sp|Q8I5R7|SYP_PLAF7 Proline--tRNA ligase OS=Plasmodium falciparum (isolate 3D7)
GN=proRS PE=1 SV=1
Length = 746
Score = 44.3 bits (103), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 13 GSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 72
G ++P A+ N+ V L D+ K + HPL N S+ + T D+ KF +S P
Sbjct: 113 GCLSPLAIKNDKENIVKLYFDEEIKNMQEVIIHPLHNYSSLYIKTQDVIKFCESFNHAPE 172
Query: 73 YVDLEAN 79
YV ++ +
Sbjct: 173 YVQIKED 179
>sp|Q9L4Q7|PROX_CLOSD Prolyl-tRNA editing protein ProX OS=Clostridium sticklandii (strain
ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) GN=proX
PE=1 SV=1
Length = 164
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 8 FKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSI 67
K+ G+V+PF ++N+ +V ++ DK + HP N ++ L+ DL+K +K+
Sbjct: 96 LKLTKGAVSPFGVLNDETAEVEVVFDKNLVGRSCVAVHPNDNSATVVLSYEDLEKIVKAN 155
Query: 68 G 68
G
Sbjct: 156 G 156
>sp|O60155|YHY6_SCHPO Putative proline--tRNA ligase C19C7.06 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC19C7.06 PE=3 SV=1
Length = 716
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 7 LFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCF-FHPLSNDMSISLNTNDLDKFLK 65
+F +P V F++ E+A V ++LD FHP S+ ++ ++ + +LK
Sbjct: 101 VFGIPPTDVGIFSVNKENASKVHVVLDAALIQHNGLLAFHPSSSAKTVFVSPAAVQTYLK 160
Query: 66 SIGRDPAYVDLEA 78
S+G +P VD A
Sbjct: 161 SVGVNPIIVDFSA 173
>sp|Q6PFS2|PRXD1_DANRE Prolyl-tRNA synthetase associated domain-containing protein 1
OS=Danio rerio GN=Prorsd1 PE=2 SV=1
Length = 184
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 13 GSVTPFALVNESARDVALLLDK----GFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIG 68
G VTP AL ++ R V +LD+ G C HP++N ++ + DL +FL+
Sbjct: 118 GCVTPLALFLDTERSVTAVLDRELTHGGHTHIHC--HPMTNSATMGITPADLLRFLEETQ 175
Query: 69 RDPAYVDLE 77
P + +
Sbjct: 176 HTPVILSFD 184
>sp|A4SGK7|RL7_PROVI 50S ribosomal protein L7/L12 OS=Prosthecochloris vibrioformis
(strain DSM 265) GN=rplL PE=3 SV=1
Length = 123
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 113 SAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILD 168
+AG S +N +A T +K AKD+ D + KAV + S DAEK V+E+ D
Sbjct: 63 AAGDSKINVIKVVRAITGLGLKEAKDLV---DGAPKAVKEAVSKEDAEKIVKELKD 115
>sp|P33076|C2TA_HUMAN MHC class II transactivator OS=Homo sapiens GN=CIITA PE=1 SV=3
Length = 1130
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 19/165 (11%)
Query: 85 DQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKD 144
D+P + F PS +T LP +P+PA ++ H + C AA E + K K + V+
Sbjct: 282 DRPGSTSPFAPS-ATDLPSMPEPALTSRANMTEHKTSPTQCPAAGEVSNKLPKWPEPVEQ 340
Query: 145 --------KSAKAVNPSSSFTDAEKFVEEILDRISAKLLS------ETKEGNIAQQGQEL 190
A+ P + + V+ L+R S+K L + E +AQ G
Sbjct: 341 FYRSLQDTYGAEPAGPDGILVEVD-LVQARLERSSSKSLERELATPDWAERQLAQGGL-- 397
Query: 191 GNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKASSLTQCPR 235
E+ ++ P + + + + AG S C R
Sbjct: 398 -AEVLLAAKEHRRPRETRVIAVLGKAGQGKSYWAGAVSRAWACGR 441
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,835,635
Number of Sequences: 539616
Number of extensions: 3550996
Number of successful extensions: 9170
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 9094
Number of HSP's gapped (non-prelim): 108
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)