Query 026582
Match_columns 236
No_of_seqs 132 out of 452
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 09:53:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3760 Uncharacterized conser 99.9 2.5E-22 5.5E-27 169.8 6.4 77 2-78 88-164 (164)
2 cd04335 PrdX_deacylase This CD 99.5 1.1E-13 2.3E-18 113.1 7.1 73 2-74 84-156 (156)
3 PF04073 tRNA_edit: Aminoacyl- 98.9 2.3E-09 4.9E-14 84.0 7.0 59 2-63 65-123 (123)
4 TIGR00011 YbaK_EbsC ybaK/ebsC 98.9 3.6E-09 7.9E-14 86.1 6.5 60 2-65 86-145 (152)
5 cd00002 YbaK_deacylase This CD 98.8 4.3E-09 9.3E-14 85.9 5.3 60 2-65 87-146 (152)
6 PRK10670 hypothetical protein; 98.8 9.5E-09 2.1E-13 85.9 6.3 67 2-77 90-156 (159)
7 cd04332 YbaK_like YbaK-like. 98.8 7.7E-09 1.7E-13 80.8 5.1 60 2-65 72-131 (136)
8 cd04336 YeaK YeaK is an unchar 98.8 1.1E-08 2.4E-13 82.9 5.5 60 2-65 86-146 (153)
9 cd04333 ProX_deacylase This CD 98.6 5.3E-08 1.1E-12 79.0 5.7 60 2-65 83-142 (148)
10 cd04939 PA2301 PA2301 is an un 97.9 1.5E-05 3.3E-10 66.2 4.9 60 2-65 76-135 (139)
11 cd04334 ProRS-INS INS is an am 97.3 0.00026 5.7E-09 58.2 4.0 44 2-50 97-140 (160)
12 COG2606 EbsC Uncharacterized c 97.2 0.00065 1.4E-08 57.6 5.4 60 2-65 87-146 (155)
13 PRK09194 prolyl-tRNA synthetas 92.4 0.14 3E-06 50.7 3.9 43 2-48 318-360 (565)
14 PRK13169 DNA replication intia 50.5 30 0.00064 28.3 4.3 14 206-224 72-85 (110)
15 PRK14563 ribosome modulation f 34.7 12 0.00026 27.5 -0.2 21 215-235 10-31 (55)
16 PF14196 ATC_hydrolase: L-2-am 33.1 1.3E+02 0.0029 23.6 5.5 71 163-234 21-98 (149)
17 smart00335 ANX Annexin repeats 31.2 1.2E+02 0.0025 20.2 4.3 51 157-212 2-52 (53)
18 PF04957 RMF: Ribosome modulat 25.3 17 0.00037 26.6 -0.7 21 215-235 10-31 (55)
19 PF00191 Annexin: Annexin; In 25.2 2.3E+02 0.005 19.4 5.6 52 157-213 15-66 (66)
20 PF04091 Sec15: Exocyst comple 23.9 1.2E+02 0.0025 28.3 4.3 66 156-221 38-107 (311)
21 PF14658 EF-hand_9: EF-hand do 23.2 28 0.00061 26.2 0.1 50 43-92 3-57 (66)
22 cd03028 GRX_PICOT_like Glutare 22.2 1.5E+02 0.0032 22.1 3.8 22 57-78 26-47 (90)
No 1
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=2.5e-22 Score=169.75 Aligned_cols=77 Identities=34% Similarity=0.563 Sum_probs=75.6
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccC
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA 78 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa 78 (236)
|+|+|+|||.|||||+||++||.+++|++|+|++|++.+.++|||++||+|.+|..+||.+||+++||+|.++|+++
T Consensus 88 E~l~E~LGv~pG~VT~Fglindt~~rv~ivlD~~l~~~~~infHPl~N~aTt~ia~~dl~~fL~atGhep~il~~~~ 164 (164)
T COG3760 88 ERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMDDDLINFHPLSNTATTSIASADLIRFLEATGHEPRILDVSA 164 (164)
T ss_pred HHHHHHhCCCcCceeEeeeecCccceEEEEEhHhhhhccccccccCCCccceeehHHHHHHHHHHcCCCceeeeccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=99.47 E-value=1.1e-13 Score=113.14 Aligned_cols=73 Identities=42% Similarity=0.681 Sum_probs=70.3
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEE
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 74 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~V 74 (236)
|++++.+|+.+|+|+|||+.+|.++.+++|+|+++...+.+.|||++|+.|+.|+++||.+|+..+||++.+|
T Consensus 84 ee~~~~~g~~~G~v~P~gl~~~~~~~v~i~iD~~l~~~~~v~~~~G~~~~~~~i~~~dl~~~~~~~~~~~~~~ 156 (156)
T cd04335 84 ERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDLLEEERVGFHPLTNTATVGISTEDLLKFLEATGHEPTVV 156 (156)
T ss_pred HHHHHHHCCCCceeCcceeccCCCCceEEEEChHHhcCCeEEEeCCCCceEEEEcHHHHHHHHHHcCCCceEC
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999875
No 3
>PF04073 tRNA_edit: Aminoacyl-tRNA editing domain; InterPro: IPR007214 This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligonucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA [].; PDB: 3MEM_A 2J3L_A 2J3M_A 1WDV_B 2Z0X_A 2Z0K_A 2CX5_C 1DBX_B 1DBU_A 1VJF_A ....
Probab=98.94 E-value=2.3e-09 Score=84.00 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=54.2
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHH
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKF 63 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KF 63 (236)
|++++++|+.+|.|+||++. ...+.+|+|+++.+.+.+.||++.++.++.|+.+||.+|
T Consensus 65 e~~~~~~g~~~G~v~P~g~~---~~~~~vvvD~~l~~~~~v~~~~g~~~~~l~~~~~dl~~l 123 (123)
T PF04073_consen 65 EELEELTGYEPGGVSPFGLP---PKGVPVVVDESLLELDNVYFGAGEPGSHLEISNEDLRKL 123 (123)
T ss_dssp HHHHHHHSSTTTS--SSGGG---STTEEEEEEGGGGGSSEEEEECSSTTEEEEEEHHHHHHH
T ss_pred HHhhhccCCCcceecccccc---cCccEEEEEHHHcCCCcEEEeCCCCCeEEEEChHHhccC
Confidence 68899999999999999996 569999999999999999999999999999999999987
No 4
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=98.89 E-value=3.6e-09 Score=86.14 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=55.8
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 65 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~ 65 (236)
+++++++|+.+|+|+|||+. ..+++|+|+++.+.+.+.|||+.++.++.|+++||.+|++
T Consensus 86 ee~~~~~g~~~G~v~P~g~~----~~~~vivD~~l~~~~~~~~~~g~~~~~~~i~~~dl~~~~~ 145 (152)
T TIGR00011 86 KDAEKVTGYIRGGISPIGQK----KKFPTYIDESAKQLETIYVSGGKRGLQIELAPDDLIRLLD 145 (152)
T ss_pred HHHHHhcCCcccccCCCCcC----CCccEEEehHHhcCCEEEEecCCCCcEEEECHHHHHHHhC
Confidence 57888999999999999974 4789999999999999999999999999999999999986
No 5
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=98.83 E-value=4.3e-09 Score=85.87 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=56.3
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 65 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~ 65 (236)
|++++++|+.+|+|+||++. ..|++|+|+++.+.+.+.+|++.|+.++.|+.+||.+|++
T Consensus 87 ee~~~~~g~~~G~v~P~~l~----~~v~~liD~~l~~~~~~~~~ag~~~~~l~i~~~~l~~~~~ 146 (152)
T cd00002 87 KDAERLTGYIRGGISPLGQK----KRLPTVIDESALDLDTIYVSAGKRGLQIELAPQDLAKLTG 146 (152)
T ss_pred HHHHHhcCCcccccCccCcC----CCccEEEehHHhcCCEEEEeCCCCCcEEEECHHHHHHHhC
Confidence 67889999999999999996 4789999999999999999999999999999999999986
No 6
>PRK10670 hypothetical protein; Provisional
Probab=98.80 E-value=9.5e-09 Score=85.86 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=60.6
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEcc
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 77 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfs 77 (236)
|++++++|+.+|+|+|||+- ..+++|+|+.+...+.+.++++.++.++.|+++||.+++. .+++||.
T Consensus 90 eev~~~tG~~~G~v~P~Gl~----~~v~v~vD~~l~~~~~i~~~aG~~~~~~~i~~~dl~~l~~-----~~~~di~ 156 (159)
T PRK10670 90 MVAQRSTGYLVGGISPLGQK----KRLPTVIDAPAQEFATIYVSGGKRGLDIELAAGDLAKLLD-----AKFADIA 156 (159)
T ss_pred HHHHHhhCCccceECccCCC----CCCeEEEehHHhcCCEEEEcCCCCCcEEEECHHHHHHHhC-----CEEEEEE
Confidence 67899999999999999983 4799999999999999999999999999999999999976 3577775
No 7
>cd04332 YbaK_like YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).
Probab=98.79 E-value=7.7e-09 Score=80.79 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=56.5
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 65 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~ 65 (236)
|++.+++|+.+|+|+||++. .+|++|+|+++.+.+.+.+|++.|+.++.|+.+||.+++.
T Consensus 72 ~~~~~~~g~~~G~v~P~~~~----~~v~~~iD~~l~~~~~~~~~~g~~~~~~~i~~~~l~~~~~ 131 (136)
T cd04332 72 EELEELTGCEPGGVGPFGLK----KGVPVVVDESLLELEDVYVGAGERGADLHLSPADLLRLLG 131 (136)
T ss_pred HHHHHHhCCCcCccCccccC----CCCcEEEehHHhhCCeEEEcCCCcCcEEEECHHHHHHHhc
Confidence 67888999999999999997 5799999999999999999999999999999999999887
No 8
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=98.76 E-value=1.1e-08 Score=82.88 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=56.0
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccC-CCeeeeecCCCcceeEecHHHHHHHHH
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKA-QERCFFHPLSNDMSISLNTNDLDKFLK 65 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~-~e~I~fHP~~NTaTI~IS~~DL~KFL~ 65 (236)
+++++++|+.+|+|+||++. ..+++|+|.++.+ .+.+++||++|+.++.|+.+||.+|..
T Consensus 86 ~~l~~~~g~~~G~v~P~gl~----~~v~~~iD~~l~~~~~~v~~~~G~~~~~l~i~~~dl~~~~~ 146 (153)
T cd04336 86 EEAEELTGCVIGAVPPFSFD----PKLKLIADPSLLDRGDEIAFNAGRLDASVVLDTADYLRIAR 146 (153)
T ss_pred HHHHHHhCCccccCCCCCCC----CCceEEEChHHhccCCEEEEcCCCCCcEEEECHHHHHHHhC
Confidence 67889999999999999995 3789999999999 799999999999999999999999986
No 9
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=98.63 E-value=5.3e-08 Score=79.00 Aligned_cols=60 Identities=17% Similarity=0.309 Sum_probs=56.0
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 65 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~ 65 (236)
+++++++|+.+|+|+||++.. .|++|+|+++...+.+.+|++.++.++.|+++||.+|+.
T Consensus 83 ~~~~~~~g~~~G~v~P~gl~~----~v~v~vD~~l~~~~~i~~~~g~~~~~~~i~~~dl~~~~~ 142 (148)
T cd04333 83 EEVRELTGFAIGGVCPFGHPE----PLPVYLDESLKRFDEVWAAAGTPNAAFRLTPDELERLTG 142 (148)
T ss_pred HHHHHHHCCCCCcCCCCCCCC----CCeEEEehhHhhCCeEEEcCCCCCcEEEECHHHHHHHhC
Confidence 678889999999999999963 699999999999999999999999999999999999986
No 10
>cd04939 PA2301 PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=97.91 E-value=1.5e-05 Score=66.21 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=56.0
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 65 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~ 65 (236)
+++++..|..+|.|||||+-. .+.++||++++..+.+.+-.+.-..++.|+++||.++..
T Consensus 76 ~ev~~~TGy~~GGvsP~G~~~----~~pv~iD~sl~~~~~v~~saG~~~~~~~l~p~~L~~~~~ 135 (139)
T cd04939 76 ETAVELTGMEYGGITPVGLPA----GWPILVDSAVAERPAVVIGSGVRRSKLLLPGAALAELPG 135 (139)
T ss_pred HHHHHhhCCCCccCCcCCcCC----CCCEEEehHHhcCCEEEECCCCCCcEEEECHHHHHHHhC
Confidence 678999999999999999954 799999999999999999999999999999999998864
No 11
>cd04334 ProRS-INS INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-celled parasites. ProRS catalyzes the attachment of proline to tRNA(Pro); proline is first activated by ATP, and then transferred to the acceptor end of tRNA(Pro). ProRS can inadvertently process noncognate amino acids such as alanine and cysteine, and to avoid such errors, in post-transfer editing, the INS domain deacylates mischarged Ala-tRNA(Pro), thus ensuring the fidelity of translation. Misacylated Cys-tRNA(Pro) is not edited by ProRS. In addition to the INS editing domain, the prokaryote-like ProRS protein contains catalytic and anticodon-binding domains which form a dimeric interface.
Probab=97.30 E-value=0.00026 Score=58.25 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=36.8
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCc
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSND 50 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NT 50 (236)
|+|++++|+.+|+|+|||+. .|++++|.++...+.+.+--+.+.
T Consensus 97 eel~~~~g~~~G~v~P~gl~-----~v~~~iD~~l~~~~~~~~ga~~~~ 140 (160)
T cd04334 97 EEIEAATGAPPGFIGPVGLK-----KIPIIADRSVADLKNFVCGANEDD 140 (160)
T ss_pred HHHHHhhCCCCCEECCcCCC-----CCeEEEehHHhcCCCEEEcCCCCC
Confidence 67889999999999999997 799999999999877655444443
No 12
>COG2606 EbsC Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.00065 Score=57.57 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=56.7
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 65 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~ 65 (236)
+++++.+|..-|.|||||+-. .+.+|+|+.+++.++|.+--+.-...|.|++.||.+++.
T Consensus 87 ~~v~~~TGy~vGGv~P~G~~~----~~p~~iD~s~~~~~~I~~~aG~rg~~v~lap~dl~~l~~ 146 (155)
T COG2606 87 EEVQRLTGYVVGGVSPFGQKK----RLPTYIDESALRFDTIYVSAGKRGLLVELAPQDLAELLG 146 (155)
T ss_pred HHHHHHhCCcccCcCCCCcCC----CCCEEEehhhhcCCeEEecCCCcCceEEECHHHHHHhhc
Confidence 678999999999999999965 899999999999999999999999999999999999886
No 13
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=92.40 E-value=0.14 Score=50.71 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=35.6
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCC
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLS 48 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~ 48 (236)
+++.+.+|+.+|+|+|||+.+ +|.+|+|.++...+.+.+.-+.
T Consensus 318 eel~~~~g~~~G~v~P~Gl~~----~v~viiD~sl~~~~~~~~gan~ 360 (565)
T PRK09194 318 EEIRAALGAVPGFLGPVGLPK----DVPIIADRSVADMSNFVVGANE 360 (565)
T ss_pred HHHHHhhCCCCCccCcccCCC----CceEEEeccccccccccccCCC
Confidence 567889999999999999975 7999999999987666554433
No 14
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=50.52 E-value=30 Score=28.31 Aligned_cols=14 Identities=50% Similarity=0.940 Sum_probs=10.4
Q ss_pred hhHHHHHhhcccccccccc
Q 026582 206 LKNLATIFKNTAYTQGFHA 224 (236)
Q Consensus 206 l~~l~~~~kn~ay~~gf~a 224 (236)
..||+++ |-+|||-
T Consensus 72 ~~NL~~L-----Y~EGFHI 85 (110)
T PRK13169 72 KDNLARL-----YQEGFHI 85 (110)
T ss_pred HHHHHHH-----HHcCcee
Confidence 3577776 7899984
No 15
>PRK14563 ribosome modulation factor; Provisional
Probab=34.73 E-value=12 Score=27.47 Aligned_cols=21 Identities=38% Similarity=0.795 Sum_probs=16.2
Q ss_pred cccccccccccccc-ccccCCC
Q 026582 215 NTAYTQGFHAGKAS-SLTQCPR 235 (236)
Q Consensus 215 n~ay~~gf~a~~~~-~~~~~~~ 235 (236)
+.||..||.||..- ....||-
T Consensus 10 ~RA~~rGYqAGv~GrSke~CPy 31 (55)
T PRK14563 10 ERAFSRGYQAGIAGRSKEMCPY 31 (55)
T ss_pred HHHHHHHHhhhccCCCcccCCC
Confidence 46899999999754 4667884
No 16
>PF14196 ATC_hydrolase: L-2-amino-thiazoline-4-carboxylic acid hydrolase
Probab=33.06 E-value=1.3e+02 Score=23.61 Aligned_cols=71 Identities=18% Similarity=0.366 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhchhhhhHHHHHHhhhcchhhhHHHHHhhccccccccc-------cccccccccCC
Q 026582 163 VEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFH-------AGKASSLTQCP 234 (236)
Q Consensus 163 v~~i~~~~s~~~lse~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~~kn~ay~~gf~-------a~~~~~~~~~~ 234 (236)
..+..+.++.-=..++-.+++..-|+..|..+....... ..+++.++..+++.-...+|. .+.....++||
T Consensus 21 y~~~~~~~~~e~~~~~~~~a~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cp 98 (149)
T PF14196_consen 21 YKALIEEMGPEEAEEIIREAIRRFGRKRGKALAERMRRK-PDDFEKFAEMMKDYPSDWVFEEVVEDDEDEFEFDFTRCP 98 (149)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHhcCCccccceeeecCCCCeEEEEEEeCh
Confidence 334444444333334445566666666655544434333 567777777666666666664 23345566776
No 17
>smart00335 ANX Annexin repeats.
Probab=31.17 E-value=1.2e+02 Score=20.16 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=31.8
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhHHHHHHhhhcchhhhHHHHH
Q 026582 157 TDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATI 212 (236)
Q Consensus 157 ~~~~~~v~~i~~~~s~~~lse~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~ 212 (236)
+|-..++ +|+-.-|..=+.+|...--..+|+.| .++|++.++-|++.+.+.
T Consensus 2 tde~~l~-~il~~rs~~~~~~i~~~Y~~~~~~~L----~~~i~~e~sG~~~~~l~~ 52 (53)
T smart00335 2 TDEKTLI-EILASRSNAQLQAIKQAYKKRYGKDL----EDDIKSETSGDFEKLLLA 52 (53)
T ss_pred CCHHHHH-HHHHcCCHHHHHHHHHHHHHHhCccH----HHHHHHhcChHHHHHHHh
Confidence 3444443 33333334445566665556667666 688888899999988765
No 18
>PF04957 RMF: Ribosome modulation factor; InterPro: IPR007040 This entry contains ribosome modulation factors (RMF). They associate with 70s ribosomes and converts them to a dimeric form (100S ribosomes) which appear during the transition from the exponential growth phase to the stationary phase of Escherichia colicells [, ]. It has been proposed that RMF mediates the formation of a 'storage ribosome', the 100S particle, in stationary phase by inactivating excess ribosomes to protect them from degradation and to maintain the required balance between the concentrations of ribosomes and protein synthesis factors in order to maintain translational elongation efficiency [, ]. ; PDB: 2JRM_A 3V24_V 3V22_V.
Probab=25.27 E-value=17 Score=26.57 Aligned_cols=21 Identities=38% Similarity=0.798 Sum_probs=14.5
Q ss_pred ccccccccccccc-cccccCCC
Q 026582 215 NTAYTQGFHAGKA-SSLTQCPR 235 (236)
Q Consensus 215 n~ay~~gf~a~~~-~~~~~~~~ 235 (236)
+.||..||.||.. .....||-
T Consensus 10 ~RA~~~GYqAG~~Grske~CPy 31 (55)
T PF04957_consen 10 ERAYSRGYQAGLSGRSKELCPY 31 (55)
T ss_dssp HHHHHHHHHHHCTTTSGCC--S
T ss_pred HHHHHHHHHhhccCCCcccCCC
Confidence 4689999999965 44667885
No 19
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=25.21 E-value=2.3e+02 Score=19.40 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=37.2
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhHHHHHHhhhcchhhhHHHHHh
Q 026582 157 TDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIF 213 (236)
Q Consensus 157 ~~~~~~v~~i~~~~s~~~lse~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~~ 213 (236)
+|-..|++ ||-.-|.-=+.+|...=-+++|+.| .+.|++.++-|++.++..+
T Consensus 15 ~de~~li~-Il~~rs~~ql~~i~~~Y~~~~g~~L----~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 15 TDEDVLIE-ILCTRSPAQLRAIKQAYKKKYGKDL----EEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp STHHHHHH-HHHHSTHHHHHHHHHHHHHHHSS-H----HHHHHHHSTHHHHHHHHHH
T ss_pred CChhHhhh-HHhhhcccccceeehhhhhhhHHHH----HHHHHHhCCHHHHHHHHhC
Confidence 66666655 5555555557777777667888877 6889999999999987653
No 20
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=23.86 E-value=1.2e+02 Score=28.30 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=46.4
Q ss_pred ccChHHHHHHHHHHHHHHHH--hhhhhhhhhhhchhhhhHHHHHHhhhcch--hhhHHHHHhhccccccc
Q 026582 156 FTDAEKFVEEILDRISAKLL--SETKEGNIAQQGQELGNEIANRLRKCCYP--ELKNLATIFKNTAYTQG 221 (236)
Q Consensus 156 ~~~~~~~v~~i~~~~s~~~l--se~~~~~~~~~~~~~~~~~~~~~~~~~~~--dl~~l~~~~kn~ay~~g 221 (236)
+..+..|+++.+.-++-+-+ +|+.+--.+--.+=|+..|.+.|++++.. .+.-++.|.-|+.|-+.
T Consensus 38 c~~ir~fi~~~~~F~~~~~~~~~eid~~v~ks~d~lL~~~l~~~L~~~i~~~~~l~qi~Qi~iNl~~le~ 107 (311)
T PF04091_consen 38 CRQIRSFIEKCYKFSDDLYQSSTEIDDIVRKSLDRLLTRVLNGSLKSKIRSSLNLSQIVQIVINLEYLEK 107 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHH
Confidence 67889999999999988865 66666322333344466677777777765 58889999999998663
No 21
>PF14658 EF-hand_9: EF-hand domain
Probab=23.20 E-value=28 Score=26.16 Aligned_cols=50 Identities=16% Similarity=0.326 Sum_probs=36.2
Q ss_pred eeecCCCcceeEecHHHHHHHHHhcCC-CcEEEEccC----CCCCCCCCCCCccc
Q 026582 43 FFHPLSNDMSISLNTNDLDKFLKSIGR-DPAYVDLEA----NPAVGKDQPPDLAA 92 (236)
Q Consensus 43 ~fHP~~NTaTI~IS~~DL~KFL~slGh-ep~~VDfsa----~p~vgkdqppdla~ 92 (236)
.|+.++...|=.+..++|..||+++|+ .|.--+|.+ ..+-|.|-.-+|-.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~ 57 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDT 57 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHH
Confidence 467778888888999999999999999 777666543 45555554444433
No 22
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=22.20 E-value=1.5e+02 Score=22.08 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCCcEEEEccC
Q 026582 57 TNDLDKFLKSIGRDPAYVDLEA 78 (236)
Q Consensus 57 ~~DL~KFL~slGhep~~VDfsa 78 (236)
-..++++|++.|.++.++|+..
T Consensus 26 C~~ak~~L~~~~i~y~~idv~~ 47 (90)
T cd03028 26 SRKVVQILNQLGVDFGTFDILE 47 (90)
T ss_pred HHHHHHHHHHcCCCeEEEEcCC
Confidence 3567899999999999999764
Done!