Query 026582
Match_columns 236
No_of_seqs 132 out of 452
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 17:00:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjf_A DNA-binding protein, pu 99.6 2E-15 6.9E-20 125.7 7.8 79 2-80 99-177 (180)
2 1vki_A Hypothetical protein AT 99.6 4.3E-15 1.5E-19 123.9 9.2 77 2-78 105-181 (181)
3 3op6_A Uncharacterized protein 98.9 8.6E-10 2.9E-14 88.8 5.0 60 2-65 86-146 (152)
4 2z0x_A Putative uncharacterize 98.9 2.8E-09 9.5E-14 85.6 6.9 67 2-77 90-156 (158)
5 1dbu_A HI1434, cysteinyl-tRNA( 98.9 3.4E-09 1.2E-13 84.9 7.0 68 2-78 90-157 (158)
6 2dxa_A Protein YBAK; trans-edi 98.7 1.8E-08 6.2E-13 81.8 5.1 67 2-77 97-163 (166)
7 1wdv_A Hypothetical protein AP 98.6 4.5E-08 1.5E-12 77.6 6.5 67 2-77 85-151 (152)
8 3mem_A Putative signal transdu 98.3 1.2E-07 4.2E-12 88.5 2.3 73 2-78 74-147 (457)
9 2j3l_A Prolyl-tRNA synthetase; 37.9 42 0.0014 31.5 5.4 43 2-48 320-362 (572)
10 2jrm_A Ribosome modulation fac 31.8 8.2 0.00028 28.1 -0.4 21 215-235 10-31 (65)
11 3v22_V Ribosome modulation fac 30.5 8.8 0.0003 27.6 -0.4 21 215-235 10-31 (61)
No 1
>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1
Probab=99.59 E-value=2e-15 Score=125.71 Aligned_cols=79 Identities=34% Similarity=0.584 Sum_probs=75.9
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccCCC
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANP 80 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa~p 80 (236)
|++++.+|+.+|+|+|||+.+|..++|++|+|+++...+.+.|||+.|+.++.|+++||.+|+..++|++.||||++..
T Consensus 99 eel~~~tG~~~G~v~P~Gl~~~~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v~~~~~~ 177 (180)
T 1vjf_A 99 EMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVDFAAME 177 (180)
T ss_dssp HHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEEETTTTE
T ss_pred HHHHHHhCCCCceeCccccCCCCCCccEEEEchHHhcCCcEEEeCCCCCeEEEECHHHHHHHHHhcCCCeEEEECcccc
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999998844
No 2
>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1
Probab=99.58 E-value=4.3e-15 Score=123.86 Aligned_cols=77 Identities=34% Similarity=0.501 Sum_probs=74.3
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccC
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA 78 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa 78 (236)
+++++.+|+.+|+|+|||++||..+.|++|+|+++...+.+.|||+.|+.++.|+++||.+|+...||++.||||++
T Consensus 105 eel~~~tG~~~G~v~P~Gl~~d~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v~~~~ 181 (181)
T 1vki_A 105 EKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLVLKVSE 181 (181)
T ss_dssp HHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCEEECCBC
T ss_pred HHHHHHHCCCcceECcceeccCCCCCCEEEEchHHhcCCeEEEeCCCCCeEEEECHHHHHHHHHhcCCCeEEEeCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999964
No 3
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=98.92 E-value=8.6e-10 Score=88.82 Aligned_cols=60 Identities=22% Similarity=0.380 Sum_probs=55.9
Q ss_pred hHhhhhh-CCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582 2 VCMCLLF-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 65 (236)
Q Consensus 2 e~LeE~L-GV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~ 65 (236)
|+|++.| |+.+|+|+|||+.++ +++|+|+++...+.+.||++.++.++.|+++||.+|+.
T Consensus 86 e~l~~~~tG~~~G~v~P~g~~~~----~~v~~D~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~ 146 (152)
T 3op6_A 86 SEFEGKFAECDVGAMPPFGNLYG----LPVLVSTKLSAQDNILFNAGSHSELMQLSFGDFEKLVK 146 (152)
T ss_dssp GGTGGGCTTSCTTCCCSCGGGGT----CCEEEEHHHHTSSEEEEECSSSSEEEEEEHHHHHHHHC
T ss_pred HHHHHHhcCCCcCCCCCCCCCcC----CeEEEehhhccCCeEEEeCCCCCcEEEECHHHHHHHhc
Confidence 5677786 999999999999874 99999999999999999999999999999999999986
No 4
>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A* 3rij_A 3ri0_A
Probab=98.89 E-value=2.8e-09 Score=85.63 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=60.7
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEcc
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 77 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfs 77 (236)
|++++.+|+.+|+|+|||+. ..+++|+|+++...+.+.+|++.++.++.|+.+||.+++. ..++|+.
T Consensus 90 e~~~~~tG~~~G~v~P~gl~----~~v~v~iD~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~-----~~~~di~ 156 (158)
T 2z0x_A 90 EEVRELTGFAIGGVPPVGHN----TPLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTG-----AQVADLK 156 (158)
T ss_dssp HHHHHHHSSCTTSCCSSCCS----SCCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHC-----CEEECCB
T ss_pred HHHHHHhCCCCccCCcCCCC----CCCcEEEEhHHhcCCcEEEECCCCCEEEEECHHHHHHHhC-----CEEEEee
Confidence 67889999999999999985 4799999999999999999999999999999999999986 2467765
No 5
>1dbu_A HI1434, cysteinyl-tRNA(Pro) deacylase; structural genomics, YBAK, structure 2 function project, S2F, hydrolase; HET: MSE; 1.80A {Haemophilus influenzae} SCOP: d.116.1.1 PDB: 1dbx_A
Probab=98.87 E-value=3.4e-09 Score=84.93 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=61.0
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccC
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA 78 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa 78 (236)
+++++.+|+.+|+|+|||+. ..|.+|+|+++...+.+.+|++.++.++.|+++||.+++.. .++|+..
T Consensus 90 e~~~~~tG~~~G~v~P~g~~----~~v~v~iD~~l~~~~~i~~~ag~~~~~~~v~~~dl~~~~~~-----~~~di~~ 157 (158)
T 1dbu_A 90 DAAQKSTGYLVGGISPLGQK----KRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLGA-----EFTDIVD 157 (158)
T ss_dssp HHHHHHHSSCTTSCCSSSCS----SCCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHTC-----EEECCBC
T ss_pred HHHHHHhCCCCccCCCCCCC----CCCEEEEEhHHhcCCeEEEeCCCCCcEEEECHHHHHHHhCC-----EEEeeec
Confidence 67889999999999999973 47999999999999999999999999999999999999863 5777753
No 6
>2dxa_A Protein YBAK; trans-editing domain, prolyl-tRNA synthetase, structural genomics, NPPSFA; HET: MSE; 1.58A {Escherichia coli}
Probab=98.67 E-value=1.8e-08 Score=81.78 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=59.8
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEcc
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 77 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfs 77 (236)
+++++.+|+.+|.|+|||+. ..|.+|+|+++...+.+.+|++.++.++.|+++||.+++.. .++|+.
T Consensus 97 e~~~~~tG~~~G~v~P~g~~----~~v~v~iD~~l~~~~~i~~~ag~~~~~i~~~~~dl~~~~~~-----~~~di~ 163 (166)
T 2dxa_A 97 MVAQRSTGYLVGGISPLGQK----KRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDA-----KFADIA 163 (166)
T ss_dssp HHHHHHHSSCTTCCCSSSCS----SCCCEEEEGGGGGSSCEEEEEEETTEEEEECHHHHHHHHTC-----EEECCE
T ss_pred HHHHHccCCCCccCCCcCCC----CCCeEEEEhHHhcCCeEEEcCCCCCcEEEECHHHHHHHhCC-----EEEEEe
Confidence 67888999999999999983 47999999999999999999999999999999999999863 466664
No 7
>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1
Probab=98.64 E-value=4.5e-08 Score=77.58 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=59.5
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEcc
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 77 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfs 77 (236)
|++++.+|+.+|+|+|||+.+ .+++|+|+++...+.+.+|++.+..++.++++||.+++.. .++|+.
T Consensus 85 ~e~~~~tG~~~G~v~P~g~~~----~v~v~~D~~l~~~~~v~~~~g~~~~~~~v~~~dl~~~~~~-----~~~di~ 151 (152)
T 1wdv_A 85 NEVVELTGYPVGGVPPVALPP----NIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATGA-----VVADVS 151 (152)
T ss_dssp HHHHHHHSSCGGGCCSSSCCT----TCEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHTC-----EEECCB
T ss_pred HHHHHHhCCCCCCCCcCCCCC----CCcEEEehHHhcCCeEEEcCCCCCeEEEECHHHHHHHhCC-----EEEeee
Confidence 678899999999999999864 8999999999999889999999999999999999988742 466653
No 8
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=98.34 E-value=1.2e-07 Score=88.54 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=64.0
Q ss_pred hHhhhhh-CCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccC
Q 026582 2 VCMCLLF-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA 78 (236)
Q Consensus 2 e~LeE~L-GV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa 78 (236)
+++++.+ |+.+|.|||||+.+ .+.+|||+++...+.+.+|++++..++.|+++||.+++...+|.-.-++.+.
T Consensus 74 ~~~~~~~~g~~~Ggv~P~g~~~----~~~~~iD~~l~~~~~i~~~~G~~~~~i~l~~~dl~~~~~~~~~~~f~~~~~~ 147 (457)
T 3mem_A 74 REQVRVRQKAGLQELPALPSLT----GWPTVVDRRVDELEAVALELGEQDLGLMMPAEDFRQLTAKAARHDFAVDTAN 147 (457)
T ss_dssp HHHHHHHHHHTCSSCCSCGGGT----CCCEEEEHHHHHCSEEEEECSSSSEEEEEEHHHHHHHTTTSEEECCEECGGG
T ss_pred HHHHHHcCCCCCCCCCCCCCCc----CCCEEEehhhccCCEEEEECCCCCceEEECHHHHHHHHccCCcccccccccc
Confidence 5688888 69999999999987 5999999999999999999999999999999999999998877544444443
No 9
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=37.93 E-value=42 Score=31.50 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=34.8
Q ss_pred hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCC
Q 026582 2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLS 48 (236)
Q Consensus 2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~ 48 (236)
+.+.+.+|..+|.++|+++- ..+.+++|..+.....+.+-.+.
T Consensus 320 ~el~~~~g~~~g~~~p~gl~----~~i~~~iD~sl~r~~~~~~ga~~ 362 (572)
T 2j3l_A 320 EDARRVLGAGFGSIGPVNVS----EDVKIYADLAVQDLANAIVGANE 362 (572)
T ss_dssp HHHHHHHSSCTTSCCSTTCC----TTCEEEEETTTTTCCSEEEECSS
T ss_pred HHHHHhhCCCccccCCccCC----CCCcEEEehhhhcCCceEEccCC
Confidence 35778889999999999983 47899999999987666665554
No 10
>2jrm_A Ribosome modulation factor; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Vibrio parahaemolyticus}
Probab=31.84 E-value=8.2 Score=28.13 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=16.7
Q ss_pred ccccccccccccc-cccccCCC
Q 026582 215 NTAYTQGFHAGKA-SSLTQCPR 235 (236)
Q Consensus 215 n~ay~~gf~a~~~-~~~~~~~~ 235 (236)
+.||..||.||.. .....||-
T Consensus 10 eRA~~rGYqAGl~GrSke~CPy 31 (65)
T 2jrm_A 10 ERAQSQGYKAGLNGRSQEACPY 31 (65)
T ss_dssp HHHHHHHHHHHHTSCSGGGCCS
T ss_pred HHHHHHHHHhhcCCCCcccCCC
Confidence 5689999999964 45678985
No 11
>3v22_V Ribosome modulation factor; stress response, small subunit H movement, stationary phase, ribosome hibernation; 3.00A {Escherichia coli} PDB: 3v24_V
Probab=30.50 E-value=8.8 Score=27.64 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=16.5
Q ss_pred ccccccccccccc-cccccCCC
Q 026582 215 NTAYTQGFHAGKA-SSLTQCPR 235 (236)
Q Consensus 215 n~ay~~gf~a~~~-~~~~~~~~ 235 (236)
+.||..||.||.. .....||-
T Consensus 10 eRA~~rGYqAGl~GrSke~CPy 31 (61)
T 3v22_V 10 ERAHQRGYQAGIAGRSKEMCPY 31 (61)
T ss_dssp HHHHHHHHHHHSSSSCCSSCCC
T ss_pred HHHHHHHHHhhccCCChhhCCC
Confidence 5689999999965 45678885
Done!