Query 026583
Match_columns 236
No_of_seqs 252 out of 883
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12428 DUF3675: Protein of u 100.0 4.6E-37 9.9E-42 247.8 8.9 114 74-189 1-118 (118)
2 KOG3053 Uncharacterized conser 99.9 5.8E-29 1.3E-33 222.2 3.1 152 12-192 14-172 (293)
3 PHA02825 LAP/PHD finger-like p 99.8 1.2E-19 2.6E-24 152.8 6.5 60 14-77 4-63 (162)
4 smart00744 RINGv The RING-vari 99.7 5.7E-18 1.2E-22 117.2 3.1 49 20-69 1-49 (49)
5 KOG1609 Protein involved in mR 99.7 5E-18 1.1E-22 151.8 1.1 191 14-205 74-273 (323)
6 PF12906 RINGv: RING-variant d 99.7 1.8E-17 3.9E-22 113.8 1.7 47 21-68 1-47 (47)
7 PHA02862 5L protein; Provision 99.7 4.1E-17 8.9E-22 135.8 3.6 63 18-88 2-64 (156)
8 COG5183 SSM4 Protein involved 99.4 8.3E-14 1.8E-18 140.0 3.9 74 11-85 5-81 (1175)
9 PF13639 zf-RING_2: Ring finge 98.6 2.8E-08 6E-13 66.2 1.7 44 19-69 1-44 (44)
10 KOG4628 Predicted E3 ubiquitin 98.3 6.5E-07 1.4E-11 84.2 4.7 50 19-74 230-279 (348)
11 COG5540 RING-finger-containing 97.9 6.5E-06 1.4E-10 76.5 3.2 52 16-73 321-372 (374)
12 PF12678 zf-rbx1: RING-H2 zinc 97.9 7.1E-06 1.5E-10 60.8 2.6 46 17-69 18-73 (73)
13 PHA02929 N1R/p28-like protein; 97.8 1E-05 2.3E-10 72.7 2.9 50 17-73 173-227 (238)
14 COG5243 HRD1 HRD ubiquitin lig 97.7 6.5E-05 1.4E-09 71.6 6.3 52 15-73 284-345 (491)
15 cd00162 RING RING-finger (Real 97.7 4.2E-05 9.1E-10 48.7 2.9 44 20-71 1-44 (45)
16 PF12861 zf-Apc11: Anaphase-pr 97.6 5.2E-05 1.1E-09 58.5 3.5 53 17-73 20-82 (85)
17 PF11793 FANCL_C: FANCL C-term 97.6 1.7E-05 3.8E-10 58.5 0.6 54 18-74 2-67 (70)
18 PF13920 zf-C3HC4_3: Zinc fing 97.4 8.1E-05 1.8E-09 50.8 2.2 46 18-73 2-48 (50)
19 PHA02926 zinc finger-like prot 97.4 0.00015 3.2E-09 65.1 3.6 60 17-83 169-238 (242)
20 PLN03208 E3 ubiquitin-protein 97.4 0.00015 3.2E-09 63.5 3.6 50 16-73 16-79 (193)
21 smart00184 RING Ring finger. E 97.3 0.00018 4E-09 44.1 2.7 39 21-68 1-39 (39)
22 PF00097 zf-C3HC4: Zinc finger 97.3 0.00017 3.7E-09 46.8 2.1 41 21-68 1-41 (41)
23 COG5219 Uncharacterized conser 97.2 3.7E-05 8E-10 80.0 -2.5 59 12-73 1463-1523(1525)
24 KOG0802 E3 ubiquitin ligase [P 97.1 0.00025 5.4E-09 70.0 2.2 49 17-72 290-340 (543)
25 KOG0317 Predicted E3 ubiquitin 97.0 0.00071 1.5E-08 62.4 4.1 53 12-74 233-285 (293)
26 KOG0828 Predicted E3 ubiquitin 97.0 0.00051 1.1E-08 67.6 3.0 58 10-73 563-634 (636)
27 PF14634 zf-RING_5: zinc-RING 96.8 0.00092 2E-08 44.6 2.3 44 20-70 1-44 (44)
28 PF13923 zf-C3HC4_2: Zinc fing 96.6 0.0012 2.6E-08 42.8 1.5 39 21-68 1-39 (39)
29 KOG1493 Anaphase-promoting com 96.4 0.001 2.3E-08 50.7 0.8 51 19-73 21-81 (84)
30 smart00504 Ubox Modified RING 96.2 0.0058 1.3E-07 42.6 3.4 44 20-73 3-46 (63)
31 KOG0823 Predicted E3 ubiquitin 96.1 0.0067 1.4E-07 54.5 4.2 51 15-73 44-95 (230)
32 KOG0827 Predicted E3 ubiquitin 96.1 0.0037 7.9E-08 60.1 2.6 47 17-69 3-52 (465)
33 COG5194 APC11 Component of SCF 95.5 0.011 2.4E-07 45.4 2.7 26 46-73 56-81 (88)
34 TIGR00599 rad18 DNA repair pro 95.3 0.011 2.4E-07 57.0 2.7 48 16-73 24-71 (397)
35 KOG0804 Cytoplasmic Zn-finger 95.3 0.0056 1.2E-07 59.7 0.4 47 17-72 174-221 (493)
36 PF06679 DUF1180: Protein of u 95.0 0.028 6.1E-07 48.2 4.0 42 172-213 101-144 (163)
37 KOG4445 Uncharacterized conser 95.0 0.011 2.3E-07 55.5 1.4 53 17-74 114-187 (368)
38 PF13445 zf-RING_UBOX: RING-ty 94.8 0.019 4.2E-07 38.7 1.9 41 21-66 1-43 (43)
39 KOG1734 Predicted RING-contain 94.5 0.011 2.5E-07 54.5 0.4 60 9-73 215-281 (328)
40 PF15227 zf-C3HC4_4: zinc fing 93.2 0.045 9.7E-07 36.4 1.3 40 21-68 1-42 (42)
41 KOG2930 SCF ubiquitin ligase, 93.1 0.05 1.1E-06 43.8 1.6 26 46-73 83-108 (114)
42 KOG1785 Tyrosine kinase negati 93.0 0.034 7.4E-07 54.0 0.6 49 17-73 368-416 (563)
43 PF14570 zf-RING_4: RING/Ubox 92.3 0.11 2.5E-06 36.1 2.3 46 21-73 1-48 (48)
44 KOG4265 Predicted E3 ubiquitin 91.9 0.13 2.8E-06 48.9 3.0 49 15-73 287-336 (349)
45 KOG1941 Acetylcholine receptor 91.5 0.087 1.9E-06 51.1 1.3 60 17-81 364-428 (518)
46 PF09026 CENP-B_dimeris: Centr 91.4 0.057 1.2E-06 42.8 0.0 11 217-227 27-37 (101)
47 KOG1645 RING-finger-containing 91.1 0.17 3.6E-06 49.2 2.9 52 17-72 3-55 (463)
48 PF05883 Baculo_RING: Baculovi 90.8 0.11 2.4E-06 43.3 1.2 73 16-97 24-103 (134)
49 PLN02189 cellulose synthase 90.6 0.3 6.6E-06 52.2 4.4 53 17-73 33-87 (1040)
50 TIGR00570 cdk7 CDK-activating 90.5 0.26 5.6E-06 46.3 3.4 51 18-74 3-55 (309)
51 PLN02436 cellulose synthase A 90.1 0.35 7.6E-06 51.9 4.4 66 4-73 18-89 (1094)
52 KOG0825 PHD Zn-finger protein 90.0 0.074 1.6E-06 55.3 -0.6 27 46-74 146-172 (1134)
53 KOG2177 Predicted E3 ubiquitin 89.1 0.18 3.9E-06 42.4 1.1 45 16-70 11-55 (386)
54 KOG0320 Predicted E3 ubiquitin 88.6 0.41 8.8E-06 41.9 3.0 49 16-72 129-177 (187)
55 KOG0287 Postreplication repair 88.6 0.17 3.8E-06 48.3 0.7 45 19-73 24-68 (442)
56 PF04564 U-box: U-box domain; 88.5 0.29 6.3E-06 35.9 1.8 46 19-73 5-50 (73)
57 KOG1039 Predicted E3 ubiquitin 88.3 0.34 7.3E-06 46.1 2.5 51 17-72 160-220 (344)
58 PF14851 FAM176: FAM176 family 87.5 0.98 2.1E-05 38.5 4.6 19 171-189 28-46 (153)
59 COG5432 RAD18 RING-finger-cont 86.7 0.36 7.8E-06 45.4 1.6 47 17-73 24-70 (391)
60 PF14569 zf-UDP: Zinc-binding 86.4 0.87 1.9E-05 34.9 3.3 55 15-73 6-62 (80)
61 PLN02195 cellulose synthase A 85.8 0.77 1.7E-05 49.0 3.7 53 17-73 5-59 (977)
62 PLN02638 cellulose synthase A 85.4 0.75 1.6E-05 49.5 3.4 53 17-73 16-70 (1079)
63 PF10272 Tmpp129: Putative tra 84.8 0.88 1.9E-05 43.6 3.3 35 36-73 306-351 (358)
64 KOG1002 Nucleotide excision re 84.6 0.7 1.5E-05 46.6 2.6 60 12-79 530-592 (791)
65 PLN02400 cellulose synthase 83.6 1.2 2.5E-05 48.1 3.8 53 17-73 35-89 (1085)
66 KOG1428 Inhibitor of type V ad 81.4 1.2 2.6E-05 49.8 3.0 55 14-73 3482-3544(3738)
67 PF05290 Baculo_IE-1: Baculovi 81.2 1.2 2.6E-05 37.3 2.4 54 17-73 79-132 (140)
68 COG5574 PEX10 RING-finger-cont 80.4 1.7 3.8E-05 40.1 3.3 50 14-72 211-261 (271)
69 KOG1832 HIV-1 Vpr-binding prot 79.0 0.89 1.9E-05 48.5 1.1 12 62-73 1213-1224(1516)
70 PF07800 DUF1644: Protein of u 78.7 2.5 5.4E-05 36.4 3.5 38 18-60 2-49 (162)
71 KOG1952 Transcription factor N 78.4 1.3 2.9E-05 46.5 2.2 56 14-73 187-247 (950)
72 KOG2164 Predicted E3 ubiquitin 77.3 2 4.4E-05 42.8 3.0 49 18-74 186-237 (513)
73 PF01528 Herpes_glycop: Herpes 76.7 3.2 6.9E-05 40.0 4.0 24 178-201 315-338 (374)
74 PF06210 DUF1003: Protein of u 76.4 18 0.0004 28.9 7.7 44 140-183 8-54 (108)
75 PF00558 Vpu: Vpu protein; In 75.0 3.7 8.1E-05 31.5 3.3 15 178-192 15-29 (81)
76 PRK11877 psaI photosystem I re 74.9 3.8 8.3E-05 27.3 2.8 34 160-193 3-36 (38)
77 PF10367 Vps39_2: Vacuolar sor 74.6 1 2.3E-05 34.0 0.2 34 16-55 76-109 (109)
78 PLN02915 cellulose synthase A 74.6 3 6.6E-05 44.9 3.6 55 15-73 12-68 (1044)
79 KOG1834 Calsyntenin [Extracell 73.9 2.2 4.7E-05 44.2 2.2 31 169-199 831-863 (952)
80 PF11368 DUF3169: Protein of u 73.8 13 0.00028 33.2 6.9 27 172-198 50-76 (248)
81 PF02480 Herpes_gE: Alphaherpe 72.4 1.2 2.6E-05 43.6 0.0 29 171-200 358-386 (439)
82 COG5175 MOT2 Transcriptional r 72.2 3.3 7.1E-05 39.9 2.8 61 6-73 2-64 (480)
83 PF08746 zf-RING-like: RING-li 71.4 2.4 5.2E-05 28.4 1.3 23 46-68 21-43 (43)
84 PRK12766 50S ribosomal protein 69.6 1.8 4E-05 39.1 0.6 17 219-235 77-93 (232)
85 KOG3899 Uncharacterized conser 69.2 2.9 6.3E-05 39.5 1.8 32 39-73 323-365 (381)
86 KOG1973 Chromatin remodeling p 68.6 1.4 3E-05 40.3 -0.4 37 35-72 232-269 (274)
87 PF05795 Plasmodium_Vir: Plasm 66.9 4.2 9.1E-05 36.6 2.3 31 169-199 286-316 (354)
88 PF14447 Prok-RING_4: Prokaryo 66.6 4.3 9.4E-05 29.1 1.8 46 17-74 6-51 (55)
89 PF15176 LRR19-TM: Leucine-ric 66.5 24 0.00053 28.3 6.2 14 179-192 32-45 (102)
90 PF14812 PBP1_TM: Transmembran 66.4 1.9 4.1E-05 33.1 0.0 15 219-233 41-55 (81)
91 PF11874 DUF3394: Domain of un 65.7 3.9 8.6E-05 35.8 1.8 20 179-198 163-182 (183)
92 KOG0843 Transcription factor E 63.7 3.5 7.6E-05 36.3 1.1 16 190-205 149-164 (197)
93 KOG3130 Uncharacterized conser 62.7 4.3 9.3E-05 39.8 1.6 13 177-189 239-251 (514)
94 PF05191 ADK_lid: Adenylate ki 62.1 3.2 6.8E-05 27.0 0.4 17 63-79 2-18 (36)
95 PF12273 RCR: Chitin synthesis 59.2 11 0.00024 30.3 3.3 7 191-197 22-28 (130)
96 COG4420 Predicted membrane pro 58.9 38 0.00083 29.9 6.7 47 139-185 61-110 (191)
97 PF08507 COPI_assoc: COPI asso 56.6 28 0.0006 28.3 5.2 12 136-147 70-81 (136)
98 KOG4172 Predicted E3 ubiquitin 56.4 7.3 0.00016 28.2 1.5 46 19-73 8-54 (62)
99 PF09788 Tmemb_55A: Transmembr 55.5 16 0.00034 33.7 3.9 61 131-191 190-251 (256)
100 PRK10747 putative protoheme IX 55.3 41 0.0009 31.6 6.9 16 175-190 49-64 (398)
101 KOG0824 Predicted E3 ubiquitin 55.1 8.3 0.00018 36.4 2.1 53 16-77 5-57 (324)
102 KOG1100 Predicted E3 ubiquitin 54.8 5.2 0.00011 35.4 0.7 40 19-72 159-199 (207)
103 KOG1940 Zn-finger protein [Gen 54.6 6.6 0.00014 36.5 1.3 43 21-70 161-204 (276)
104 COG5236 Uncharacterized conser 53.4 14 0.00029 36.0 3.2 55 13-75 56-110 (493)
105 PF01595 DUF21: Domain of unkn 50.8 88 0.0019 25.5 7.4 25 141-165 95-119 (183)
106 KOG0955 PHD finger protein BR1 50.3 5.4 0.00012 43.2 0.1 52 15-70 216-268 (1051)
107 PF02891 zf-MIZ: MIZ/SP-RING z 50.0 13 0.00027 25.6 1.9 35 34-71 11-50 (50)
108 PF07214 DUF1418: Protein of u 50.0 1.3E+02 0.0028 23.9 8.1 7 182-188 62-68 (96)
109 PF04889 Cwf_Cwc_15: Cwf15/Cwc 49.7 7.3 0.00016 35.4 0.8 6 223-228 144-149 (244)
110 KOG0978 E3 ubiquitin ligase in 49.0 9.2 0.0002 39.8 1.5 48 18-74 643-690 (698)
111 PF08595 RXT2_N: RXT2-like, N- 48.7 9.4 0.0002 32.3 1.3 10 224-233 76-85 (149)
112 KOG1607 Protein transporter of 48.6 1.3E+02 0.0028 28.7 8.8 8 181-188 278-285 (318)
113 KOG1832 HIV-1 Vpr-binding prot 48.0 7.8 0.00017 41.8 0.8 7 121-127 1302-1308(1516)
114 KOG3268 Predicted E3 ubiquitin 46.3 16 0.00035 32.4 2.3 56 14-73 161-228 (234)
115 PF15243 ANAPC15: Anaphase-pro 46.2 19 0.00041 28.3 2.5 6 190-195 40-45 (92)
116 TIGR00540 hemY_coli hemY prote 45.6 43 0.00093 31.5 5.3 11 179-189 53-63 (409)
117 PF02632 BioY: BioY family; I 45.5 53 0.0012 27.4 5.3 56 136-196 25-81 (148)
118 KOG0943 Predicted ubiquitin-pr 45.1 10 0.00022 42.3 1.2 23 47-69 1394-1416(3015)
119 PF13974 YebO: YebO-like prote 43.0 34 0.00074 26.3 3.4 17 173-189 8-24 (80)
120 PF02117 7TM_GPCR_Sra: Serpent 42.0 85 0.0018 29.2 6.6 39 159-197 268-306 (328)
121 smart00249 PHD PHD zinc finger 41.9 8.3 0.00018 24.1 -0.1 30 20-55 1-31 (47)
122 KOG2879 Predicted E3 ubiquitin 41.8 30 0.00065 32.4 3.5 54 13-73 234-287 (298)
123 PF13386 DsbD_2: Cytochrome C 41.3 1E+02 0.0023 26.1 6.6 61 134-197 119-183 (199)
124 KOG4692 Predicted E3 ubiquitin 39.9 21 0.00046 34.8 2.3 48 16-73 420-467 (489)
125 TIGR03052 PS_I_psaI photosyste 39.4 21 0.00046 22.8 1.5 23 171-193 7-29 (31)
126 KOG3970 Predicted E3 ubiquitin 39.3 40 0.00087 31.0 3.8 51 16-72 48-104 (299)
127 PF15539 CAF1-p150_C2: CAF1 co 39.2 20 0.00043 33.5 1.9 33 189-221 216-248 (292)
128 KOG4443 Putative transcription 38.8 25 0.00055 36.4 2.8 39 19-60 19-57 (694)
129 PF04871 Uso1_p115_C: Uso1 / p 38.7 31 0.00067 28.5 2.9 13 197-209 108-120 (136)
130 COG5058 LAG1 Protein transport 38.6 1.9E+02 0.0041 28.1 8.3 21 134-154 286-307 (395)
131 PF03606 DcuC: C4-dicarboxylat 38.6 58 0.0013 31.8 5.2 24 167-190 194-217 (465)
132 KOG4323 Polycomb-like PHD Zn-f 38.4 12 0.00026 37.2 0.4 52 17-71 167-224 (464)
133 PRK11246 hypothetical protein; 37.2 41 0.00088 30.4 3.5 15 202-216 196-210 (218)
134 CHL00186 psaI photosystem I su 36.8 54 0.0012 21.6 3.1 23 171-193 10-32 (36)
135 PF13829 DUF4191: Domain of un 36.7 1.3E+02 0.0027 27.3 6.6 45 138-188 31-75 (224)
136 COG5152 Uncharacterized conser 35.9 25 0.00054 31.7 2.0 45 19-73 197-241 (259)
137 KOG0956 PHD finger protein AF1 35.4 31 0.00068 36.2 2.8 57 17-73 116-182 (900)
138 PF04156 IncA: IncA protein; 35.1 1.7E+02 0.0038 24.4 7.0 24 136-159 8-31 (191)
139 COG1983 PspC Putative stress-r 35.0 45 0.00097 25.0 2.9 15 174-188 45-59 (70)
140 PF12753 Nro1: Nuclear pore co 34.3 14 0.0003 36.1 0.1 25 212-236 223-249 (404)
141 PRK10263 DNA translocase FtsK; 34.1 1.4E+02 0.003 33.8 7.4 7 173-179 115-121 (1355)
142 smart00782 PhnA_Zn_Ribbon PhnA 34.0 19 0.00041 24.8 0.7 24 60-83 5-29 (47)
143 PHA03283 envelope glycoprotein 33.4 40 0.00086 34.2 3.1 9 193-201 427-435 (542)
144 PF09323 DUF1980: Domain of un 32.6 1.1E+02 0.0024 25.9 5.4 26 162-187 72-98 (182)
145 KOG1814 Predicted E3 ubiquitin 32.6 30 0.00065 34.1 2.1 48 18-70 184-237 (445)
146 PF14143 YrhC: YrhC-like prote 32.3 82 0.0018 23.7 4.0 17 137-153 15-31 (72)
147 KOG2548 SWAP mRNA splicing reg 31.8 22 0.00049 36.1 1.1 22 211-232 183-204 (653)
148 PF03854 zf-P11: P-11 zinc fin 30.6 27 0.00058 24.6 1.0 26 46-73 21-46 (50)
149 PF04532 DUF587: Protein of un 30.4 15 0.00032 32.9 -0.4 28 24-51 93-121 (215)
150 PF13878 zf-C2H2_3: zinc-finge 29.9 27 0.00058 23.1 0.9 15 61-75 12-26 (41)
151 PF05715 zf-piccolo: Piccolo Z 29.7 32 0.0007 25.1 1.4 19 62-80 2-20 (61)
152 PF01440 Gemini_AL2: Geminivir 29.7 8.5 0.00018 32.2 -1.9 33 34-69 32-64 (134)
153 PF01299 Lamp: Lysosome-associ 29.6 29 0.00063 31.8 1.4 28 175-202 277-304 (306)
154 PF13894 zf-C2H2_4: C2H2-type 29.1 21 0.00045 19.2 0.2 10 64-73 2-11 (24)
155 KOG4159 Predicted E3 ubiquitin 29.0 35 0.00076 33.3 1.9 48 16-73 82-129 (398)
156 TIGR02230 ATPase_gene1 F0F1-AT 28.7 2.8E+02 0.006 22.0 6.6 43 138-184 48-92 (100)
157 PF13153 DUF3985: Protein of u 28.7 1.9E+02 0.0041 19.6 5.1 24 162-185 14-37 (44)
158 PF05009 EBV-NA3: Epstein-Barr 28.2 19 0.00042 33.0 0.0 27 207-233 214-241 (255)
159 PF11789 zf-Nse: Zinc-finger o 28.0 37 0.0008 24.0 1.4 44 17-67 10-53 (57)
160 KOG2034 Vacuolar sorting prote 27.9 28 0.0006 37.3 1.0 37 16-58 815-851 (911)
161 PF10669 Phage_Gp23: Protein g 27.8 41 0.00089 27.1 1.8 28 161-188 10-37 (121)
162 COG2322 Predicted membrane pro 27.7 1.4E+02 0.0031 26.1 5.2 55 137-191 84-144 (177)
163 PF14018 DUF4234: Domain of un 27.2 2.4E+02 0.0052 20.2 7.9 57 137-194 12-71 (75)
164 PF10628 CotE: Outer spore coa 26.6 28 0.00061 30.6 0.7 15 219-233 160-174 (182)
165 KOG3039 Uncharacterized conser 26.6 50 0.0011 30.7 2.3 50 17-73 220-270 (303)
166 PLN03078 Putative tRNA pseudou 26.5 29 0.00063 34.9 0.9 21 207-227 271-291 (513)
167 PF05086 Dicty_REP: Dictyostel 26.2 25 0.00055 37.2 0.4 10 185-194 871-880 (911)
168 TIGR02848 spore_III_AC stage I 26.1 2.1E+02 0.0046 21.1 5.1 31 156-192 25-55 (64)
169 PF00096 zf-C2H2: Zinc finger, 25.4 23 0.00051 19.5 -0.0 10 64-73 2-11 (23)
170 PF04641 Rtf2: Rtf2 RING-finge 25.3 68 0.0015 28.9 3.0 51 15-73 110-161 (260)
171 PF12420 DUF3671: Protein of u 25.1 2.5E+02 0.0054 22.2 5.8 48 141-188 51-101 (104)
172 COG3071 HemY Uncharacterized e 25.0 2.2E+02 0.0049 27.9 6.5 18 141-158 6-23 (400)
173 PF10497 zf-4CXXC_R1: Zinc-fin 24.9 97 0.0021 24.5 3.5 52 16-71 5-70 (105)
174 PF05097 DUF688: Protein of un 24.8 35 0.00077 33.8 1.1 6 212-217 226-231 (446)
175 COG3216 Uncharacterized protei 24.4 2.6E+02 0.0057 24.7 6.2 30 170-199 147-176 (184)
176 KOG1725 Protein involved in me 24.3 1.2E+02 0.0026 26.7 4.2 35 139-189 45-79 (186)
177 PHA03375 hypothetical protein; 24.2 24 0.00053 37.0 -0.1 28 24-51 99-127 (844)
178 KOG1334 WD40 repeat protein [G 24.1 86 0.0019 31.7 3.6 6 226-231 547-552 (559)
179 PF10571 UPF0547: Uncharacteri 24.0 39 0.00085 20.4 0.8 13 61-73 13-25 (26)
180 PF14017 DUF4233: Protein of u 23.9 2.1E+02 0.0046 22.8 5.3 31 165-195 69-99 (107)
181 PF04423 Rad50_zn_hook: Rad50 23.7 27 0.00058 24.0 0.0 22 52-73 8-31 (54)
182 COG3114 CcmD Heme exporter pro 23.7 1.7E+02 0.0036 21.9 4.1 12 193-204 50-61 (67)
183 PF02084 Bindin: Bindin; Inte 23.6 17 0.00036 33.1 -1.3 17 207-223 157-173 (238)
184 cd02865 Heme_Cu_Oxidase_III_2 23.3 4.5E+02 0.0098 22.1 7.7 55 133-187 86-147 (184)
185 KOG2068 MOT2 transcription fac 23.3 81 0.0017 30.1 3.1 52 17-74 248-299 (327)
186 COG1268 BioY Uncharacterized c 23.1 82 0.0018 27.5 2.9 53 138-195 56-109 (184)
187 KOG0802 E3 ubiquitin ligase [P 23.0 33 0.00072 34.2 0.6 44 16-73 477-520 (543)
188 PF05568 ASFV_J13L: African sw 23.0 1.5E+02 0.0033 25.6 4.4 23 173-195 34-56 (189)
189 PRK12860 transcriptional activ 22.9 40 0.00087 29.7 1.0 28 36-69 134-161 (189)
190 PF06750 DiS_P_DiS: Bacterial 22.8 84 0.0018 24.2 2.7 34 41-76 39-72 (92)
191 KOG3130 Uncharacterized conser 22.2 42 0.00091 33.2 1.0 12 220-231 278-289 (514)
192 PF15345 TMEM51: Transmembrane 22.1 94 0.002 28.4 3.2 27 171-199 63-89 (233)
193 COG3924 Predicted membrane pro 21.7 2.8E+02 0.0061 21.2 5.1 36 128-163 8-43 (80)
194 COG3088 CcmH Uncharacterized p 21.7 1.7E+02 0.0037 25.1 4.5 11 61-71 43-53 (153)
195 PF00628 PHD: PHD-finger; Int 21.5 25 0.00055 23.2 -0.4 44 20-69 1-49 (51)
196 KOG2533 Permease of the major 21.4 3.2E+02 0.0069 27.2 7.0 13 146-158 414-426 (495)
197 PHA03171 UL37 tegument protein 21.4 77 0.0017 31.4 2.6 24 178-201 34-60 (499)
198 PRK12722 transcriptional activ 21.3 46 0.00099 29.3 1.0 29 36-70 134-162 (187)
199 PF10161 DDDD: Putative mitoch 21.0 41 0.00089 25.8 0.6 13 177-189 45-57 (79)
200 KOG1189 Global transcriptional 21.0 50 0.0011 35.1 1.4 6 161-166 775-780 (960)
201 PF11118 DUF2627: Protein of u 20.6 3.6E+02 0.0078 20.6 5.6 19 136-154 3-21 (77)
202 PHA03096 p28-like protein; Pro 20.6 66 0.0014 29.9 2.0 47 19-70 179-231 (284)
203 PF07219 HemY_N: HemY protein 20.6 2.1E+02 0.0045 22.2 4.5 8 189-196 49-56 (108)
204 TIGR03382 GC_trans_RRR Myxococ 20.6 1.1E+02 0.0023 18.7 2.2 16 178-195 11-26 (27)
205 PF05915 DUF872: Eukaryotic pr 20.5 4.5E+02 0.0097 21.2 6.5 24 171-194 81-104 (115)
206 PF04246 RseC_MucC: Positive r 20.4 3E+02 0.0066 21.9 5.6 22 138-159 74-95 (135)
207 KOG3064 RNA-binding nuclear pr 20.3 38 0.00083 31.6 0.3 13 62-74 40-52 (303)
208 cd00386 Heme_Cu_Oxidase_III_li 20.2 4E+02 0.0087 22.1 6.5 55 134-188 89-147 (183)
209 KOG0772 Uncharacterized conser 20.2 49 0.0011 33.8 1.0 7 175-181 110-116 (641)
210 PHA03237 envelope glycoprotein 20.2 7.9E+02 0.017 24.4 9.3 23 174-196 334-356 (424)
211 KOG3800 Predicted E3 ubiquitin 20.1 81 0.0018 29.7 2.4 51 20-76 2-55 (300)
No 1
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=100.00 E-value=4.6e-37 Score=247.83 Aligned_cols=114 Identities=51% Similarity=0.846 Sum_probs=106.8
Q ss_pred CCccCCCCcchhHHHHh--hcccccccccCCCCCchhHHHH--hhhhcccCCCccccCCCCchhHHHHHHHHHHHHHHHH
Q 026583 74 PGYTAPSKKSQLIEAAV--TISLQIPRREHVPRNPRLVAIA--ERLSAESHYPQCSSAAGRTAACCRSLALTFTVLLLVK 149 (236)
Q Consensus 74 ~~y~~~p~~~pl~~~~i--~~~~~i~~~~~~~~~~~~~~~a--~~~~~~s~Y~~~~~~~~~~~~~cr~~a~i~~vlLllr 149 (236)
|+||+|||+.+..+++| |++|++++ +|++|+++++++ ++++++++|++|+++|++|++||||+|+|||++||||
T Consensus 1 PgYTaPp~~~~~~~~~i~ir~~we~~~--~d~~~~~~~a~~~ae~~~l~~~y~e~~~~~~~~a~~CRsvAli~m~LLllR 78 (118)
T PF12428_consen 1 PGYTAPPKKFQPGETAIDIRGNWEISR--RDLRDPRFLAMAAAERQFLESEYDEYAASNTRGAACCRSVALIFMVLLLLR 78 (118)
T ss_pred CCCCCCCCCCCcCccceEecCCccccc--cCccchhhhhhhhhhhhccccccccccccCCCceeHHHHHHHHHHHHHHHH
Confidence 68999999999988775 88999654 789999999996 5588999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 026583 150 HLFAVLTGNTDDYPFALVTVLLLRACGIILPMYVLMRTIT 189 (236)
Q Consensus 150 h~l~l~~~g~~d~~f~l~tl~~Lra~Gillp~yI~~rai~ 189 (236)
|+++++++|.++|+|++||+++|||+|||||||||+|+|+
T Consensus 79 hal~l~~~~~~~~s~~lftl~~LRaaGilLP~Yim~rais 118 (118)
T PF12428_consen 79 HALALVTGGAEDYSFTLFTLLLLRAAGILLPCYIMARAIS 118 (118)
T ss_pred HHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999974
No 2
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=5.8e-29 Score=222.23 Aligned_cols=152 Identities=24% Similarity=0.342 Sum_probs=132.3
Q ss_pred CCCCCCCCeeeEcccCcccC-CCccccccccCCCcccccHHHHHHHHHhhC------CcccccccCcccCCccCCCCcch
Q 026583 12 KSNPETTSHCRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKG------NTTCEICLQEYGPGYTAPSKKSQ 84 (236)
Q Consensus 12 ~s~s~~~~~CRIC~~e~~e~-~~~li~PC~C~GSlk~vH~~CL~rWl~~k~------~~~CeiCk~~y~~~y~~~p~~~p 84 (236)
.++.+.++.||||+.+++++ ...|+.||.|+||.||||++||.+|+++|. ..+|++|+++|.++| |++.|
T Consensus 14 ~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~---P~l~~ 90 (293)
T KOG3053|consen 14 SDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF---PQLGP 90 (293)
T ss_pred CCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec---cccCh
Confidence 35567889999999998765 344999999999999999999999999984 579999999999999 89999
Q ss_pred hHHHHhhcccccccccCCCCCchhHHHHhhhhcccCCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH
Q 026583 85 LIEAAVTISLQIPRREHVPRNPRLVAIAERLSAESHYPQCSSAAGRTAACCRSLALTFTVLLLVKHLFAVLTGNTDDYPF 164 (236)
Q Consensus 85 l~~~~i~~~~~i~~~~~~~~~~~~~~~a~~~~~~s~Y~~~~~~~~~~~~~cr~~a~i~~vlLllrh~l~l~~~g~~d~~f 164 (236)
+..++-+.+..+. ...|..+++.++.+.| |.+++++++|++|+++|.-++.+++..|+.|
T Consensus 91 ~~~~Le~~d~~i~--------r~cp~l~~g~~v~~iY------------WsAVtyGA~T~lQv~G~~~~m~ime~~d~~~ 150 (293)
T KOG3053|consen 91 FDRVLERLDILIF--------RLCPFLAAGIFVGSIY------------WSAVTYGAVTVLQVVGQEHGMQIMESGDPLF 150 (293)
T ss_pred HHHHHHHhhhHHh--------hcChHHHHHHHhheee------------hhhhhhcceeeeehhhhHHHHHHHhcCCceE
Confidence 8776633333332 4578899999999999 9999999999999999999999999999998
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026583 165 ALVTVLLLRACGIILPMYVLMRTITAIH 192 (236)
Q Consensus 165 ~l~tl~~Lra~Gillp~yI~~rai~~iq 192 (236)
.++ +||++ +.++|+.|.|+|-.
T Consensus 151 lli---GlP~i---pv~LiL~RlirWeD 172 (293)
T KOG3053|consen 151 LLI---GLPSI---PVGLILGRLIRWED 172 (293)
T ss_pred EEE---cCCcc---hHHHHHhhheeHHH
Confidence 877 99999 99999999999976
No 3
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.79 E-value=1.2e-19 Score=152.84 Aligned_cols=60 Identities=25% Similarity=0.620 Sum_probs=53.1
Q ss_pred CCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCCcc
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYT 77 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~y~ 77 (236)
.+...+.||||+++++ .+.+||+|+||+||||++||++|++.+++..||+|+++|++...
T Consensus 4 ~s~~~~~CRIC~~~~~----~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~ 63 (162)
T PHA02825 4 VSLMDKCCWICKDEYD----VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKN 63 (162)
T ss_pred cCCCCCeeEecCCCCC----CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEe
Confidence 4567799999998864 25789999999999999999999999999999999999986653
No 4
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.70 E-value=5.7e-18 Score=117.23 Aligned_cols=49 Identities=49% Similarity=1.201 Sum_probs=43.9
Q ss_pred eeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCccccccc
Q 026583 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (236)
Q Consensus 20 ~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk 69 (236)
.||||+++++ +++++++||+|+||++|||++||++|+.++++.+||+|+
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999999333 456799999999999999999999999999999999996
No 5
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.68 E-value=5e-18 Score=151.81 Aligned_cols=191 Identities=22% Similarity=0.287 Sum_probs=124.4
Q ss_pred CCCCCCeeeEcccCcccCCC-ccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCCccCCCCcchhHHHHh--
Q 026583 14 NPETTSHCRICHEEEFESCN-SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTAPSKKSQLIEAAV-- 90 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~-~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~y~~~p~~~pl~~~~i-- 90 (236)
.+.++..||||+++.++... .++.||.|+|+++++|+.|+++|+..|++..||+|++.|...++.+++.........
T Consensus 74 ~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~~~~ 153 (323)
T KOG1609|consen 74 SPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVISKVRSGA 153 (323)
T ss_pred CCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehhhhhhHh
Confidence 34446899999998765322 689999999999999999999999999999999999999988877555443333222
Q ss_pred hcccccccccCCCCCchhHHHH--hhhhcccCCCccccCCCCchhHHHHHH-HHHHHHHHHHHHHHHHhCC---CCCchH
Q 026583 91 TISLQIPRREHVPRNPRLVAIA--ERLSAESHYPQCSSAAGRTAACCRSLA-LTFTVLLLVKHLFAVLTGN---TDDYPF 164 (236)
Q Consensus 91 ~~~~~i~~~~~~~~~~~~~~~a--~~~~~~s~Y~~~~~~~~~~~~~cr~~a-~i~~vlLllrh~l~l~~~g---~~d~~f 164 (236)
...+..... ....+.....+. ...++...+.+.....+..+..+++.+ .++.++.++++.+.+.... ...+..
T Consensus 154 ~~~~~~~~~-~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 232 (323)
T KOG1609|consen 154 LSERTLSGM-ILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYIFILKS 232 (323)
T ss_pred hhheeeehh-hhhhhhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHHHHHHH
Confidence 111222110 111112222221 122333334333344444445566666 6777778888877765442 225666
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhcccccc
Q 026583 165 ALVTVLLLRACGIILPMYVLMRTITAIHNSIRREYHHVTYD 205 (236)
Q Consensus 165 ~l~tl~~Lra~Gillp~yI~~rai~~iq~~rrrq~~~q~~~ 205 (236)
+.+.++.+++.+++.+.+++.+++-..|.++.++..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (323)
T KOG1609|consen 233 LKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRLVGYLLAN 273 (323)
T ss_pred HHHHHhHhhhhccchhhhhhhhhHHHHHHHHhcceeEEEec
Confidence 77778899999999999998766666676666666554433
No 6
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.66 E-value=1.8e-17 Score=113.84 Aligned_cols=47 Identities=53% Similarity=1.220 Sum_probs=38.4
Q ss_pred eeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccc
Q 026583 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68 (236)
Q Consensus 21 CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiC 68 (236)
||||+++++++. +|++||+|+||++|||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 899999987643 79999999999999999999999999999999998
No 7
>PHA02862 5L protein; Provisional
Probab=99.66 E-value=4.1e-17 Score=135.77 Aligned_cols=63 Identities=22% Similarity=0.520 Sum_probs=52.4
Q ss_pred CCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCCccCCCCcchhHHH
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTAPSKKSQLIEA 88 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~y~~~p~~~pl~~~ 88 (236)
...||||++++++. .+||+|+||+||||++||++|++.+++..||+|+++|.+. ++.+|+...
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik----~~yKpf~kW 64 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK----KTYVSFKKW 64 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE----EccccHHHh
Confidence 36899999987643 6999999999999999999999999999999999999642 334455443
No 8
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.42 E-value=8.3e-14 Score=140.04 Aligned_cols=74 Identities=32% Similarity=0.747 Sum_probs=61.9
Q ss_pred CCCCCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc--CCccC-CCCcchh
Q 026583 11 FKSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG--PGYTA-PSKKSQL 85 (236)
Q Consensus 11 ~~s~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~--~~y~~-~p~~~pl 85 (236)
...+.++...||||+.++.+ ++++.+||+|+||+||+|++||..|+..+++++|++|+++|+ ..|.. .|..-|+
T Consensus 5 ~~~mN~d~~~CRICr~e~~~-d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~~IPf 81 (1175)
T COG5183 5 NTPMNEDKRSCRICRTEDIR-DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQIIPF 81 (1175)
T ss_pred CCCCCccchhceeecCCCCC-CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCcccce
Confidence 34566778999999998865 357999999999999999999999999999999999998874 45644 5666665
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.55 E-value=2.8e-08 Score=66.22 Aligned_cols=44 Identities=32% Similarity=0.833 Sum_probs=35.3
Q ss_pred CeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCccccccc
Q 026583 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk 69 (236)
..|.||+++..+++.....||+ |.+|.+|+++|++.+ .+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhC--CcCCccC
Confidence 3699999999766666677865 999999999999764 5999996
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=6.5e-07 Score=84.24 Aligned_cols=50 Identities=26% Similarity=0.611 Sum_probs=43.9
Q ss_pred CeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
..|-||++++.+++..-+.||+ |.+|..|+..|+... .+.||+||+....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 6999999999988776789999 999999999999765 6779999997653
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=6.5e-06 Score=76.50 Aligned_cols=52 Identities=19% Similarity=0.532 Sum_probs=43.8
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+...+|-||++..-.++..+++||+ |-+|..|+.+|+.. -+..||.|+++.+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~-y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLG-YSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhh-hcccCCccCCCCC
Confidence 4569999999988666667899999 99999999999973 3569999998765
No 12
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.91 E-value=7.1e-06 Score=60.83 Aligned_cols=46 Identities=33% Similarity=0.829 Sum_probs=32.1
Q ss_pred CCCeeeEcccCcccC----------CCccccccccCCCcccccHHHHHHHHHhhCCccccccc
Q 026583 17 TTSHCRICHEEEFES----------CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~----------~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk 69 (236)
....|-||++...+. ......+|+ |.+|..||.+|++ .+.+||+|+
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~--~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLK--QNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHT--TSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHh--cCCcCCCCC
Confidence 345699999887321 112345666 9999999999994 455999996
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.84 E-value=1e-05 Score=72.74 Aligned_cols=50 Identities=22% Similarity=0.598 Sum_probs=38.3
Q ss_pred CCCeeeEcccCcccCCC-----ccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFESCN-----SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~-----~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
...+|.||++...+... ....||. |.+|..|+.+|+. .+.+||+|+..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~--~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKK--EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHh--cCCCCCCCCCEee
Confidence 45899999997543211 2355676 9999999999995 4679999998876
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=6.5e-05 Score=71.64 Aligned_cols=52 Identities=25% Similarity=0.648 Sum_probs=39.9
Q ss_pred CCCCCeeeEcccCc-ccC---------CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 15 PETTSHCRICHEEE-FES---------CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 15 s~~~~~CRIC~~e~-~e~---------~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
..+...|-||.++- ..+ ..+-..||. |..|-.||+.|+. .+.+|||||.+..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~E--RqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLE--RQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHH--hccCCCcccCccc
Confidence 34678999999883 211 123478998 9999999999995 4679999997743
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.66 E-value=4.2e-05 Score=48.71 Aligned_cols=44 Identities=36% Similarity=0.825 Sum_probs=34.0
Q ss_pred eeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCc
Q 026583 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQE 71 (236)
Q Consensus 20 ~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~ 71 (236)
.|.||++.... .....||. |.+|..|+.+|+.. ++..||+|+..
T Consensus 1 ~C~iC~~~~~~--~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFRE--PVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhC--ceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 48899887732 22455676 99999999999975 57789999965
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.63 E-value=5.2e-05 Score=58.48 Aligned_cols=53 Identities=25% Similarity=0.485 Sum_probs=38.5
Q ss_pred CCCeeeEcccCccc--------CC-CccccccccCCCcccccHHHHHHHHHhh-CCcccccccCccc
Q 026583 17 TTSHCRICHEEEFE--------SC-NSLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e--------~~-~~li~PC~C~GSlk~vH~~CL~rWl~~k-~~~~CeiCk~~y~ 73 (236)
....|-||....+. ++ -++ .-+.|+ |-||..||.+|+++. .+..||+|+++++
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cpl-v~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPL-VWGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCce-eeccCc---cHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 36789999876642 11 112 124566 999999999999864 5689999999886
No 17
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.60 E-value=1.7e-05 Score=58.46 Aligned_cols=54 Identities=19% Similarity=0.394 Sum_probs=25.6
Q ss_pred CCeeeEcccCcccCCCccccc---cccCCCcccccHHHHHHHHHhhC---------CcccccccCcccC
Q 026583 18 TSHCRICHEEEFESCNSLEAP---CACSGTVKFAHRDCIQRWCYEKG---------NTTCEICLQEYGP 74 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~P---C~C~GSlk~vH~~CL~rWl~~k~---------~~~CeiCk~~y~~ 74 (236)
+..|.||+....+.......- .+|+ +.+|..||.+|+.... .-+||.|++++..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999998754221122333 4677 8999999999997531 2369999988763
No 18
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.45 E-value=8.1e-05 Score=50.76 Aligned_cols=46 Identities=26% Similarity=0.626 Sum_probs=37.3
Q ss_pred CCeeeEcccCcccCCCccccccccCCCccc-ccHHHHHHHHHhhCCcccccccCccc
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~-vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
...|.||++...+ ....||+ |. +-..|+.+|++ +...||+|+++++
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 3689999987643 5789998 88 99999999996 7789999998875
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=97.38 E-value=0.00015 Score=65.05 Aligned_cols=60 Identities=23% Similarity=0.494 Sum_probs=43.7
Q ss_pred CCCeeeEcccCccc------CCCccccccccCCCcccccHHHHHHHHHhh----CCcccccccCcccCCccCCCCcc
Q 026583 17 TTSHCRICHEEEFE------SCNSLEAPCACSGTVKFAHRDCIQRWCYEK----GNTTCEICLQEYGPGYTAPSKKS 83 (236)
Q Consensus 17 ~~~~CRIC~~e~~e------~~~~li~PC~C~GSlk~vH~~CL~rWl~~k----~~~~CeiCk~~y~~~y~~~p~~~ 83 (236)
.+.+|-||++.--+ ..-.+..+|+ |.+...|+.+|.+.+ ....||+|+..+. +..|.+-.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pSrf~ 238 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMSKFY 238 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccccce
Confidence 46899999987422 1123577888 999999999999864 2467999999987 44454433
No 20
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.38 E-value=0.00015 Score=63.53 Aligned_cols=50 Identities=20% Similarity=0.655 Sum_probs=40.3
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh--------------hCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--------------KGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~--------------k~~~~CeiCk~~y~ 73 (236)
++.-.|.||++...+ +.+++|. |.+...||.+|+.. ++...||+|+..+.
T Consensus 16 ~~~~~CpICld~~~d---PVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRD---PVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCC---cEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 456899999987654 4788887 99999999999863 23568999999874
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.34 E-value=0.00018 Score=44.08 Aligned_cols=39 Identities=44% Similarity=0.995 Sum_probs=31.4
Q ss_pred eeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccc
Q 026583 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68 (236)
Q Consensus 21 CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiC 68 (236)
|.||++... +....||. |.+|..|+.+|++ .+...||+|
T Consensus 1 C~iC~~~~~---~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 778988732 34678887 9999999999997 566789987
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.27 E-value=0.00017 Score=46.76 Aligned_cols=41 Identities=32% Similarity=0.861 Sum_probs=35.0
Q ss_pred eeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccc
Q 026583 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68 (236)
Q Consensus 21 CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiC 68 (236)
|.||++...+. ....||. |.+...|+.+|++.++...||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 78998887643 2489998 99999999999988788999998
No 23
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.20 E-value=3.7e-05 Score=80.02 Aligned_cols=59 Identities=24% Similarity=0.523 Sum_probs=42.4
Q ss_pred CCCCCCCCeeeEcccCcccCCCcc-ccccc-cCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 12 KSNPETTSHCRICHEEEFESCNSL-EAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 12 ~s~s~~~~~CRIC~~e~~e~~~~l-i~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
.-.-++..+|.||..--.--+..+ -..|. |+ +-+|..||.+|++++++.+||+|+..++
T Consensus 1463 ~~~fsG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1463 DEKFSGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhcCCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 334457789999975543101112 23444 66 7899999999999999999999997764
No 24
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00025 Score=70.03 Aligned_cols=49 Identities=29% Similarity=0.682 Sum_probs=40.5
Q ss_pred CCCeeeEcccCcccCCC--ccccccccCCCcccccHHHHHHHHHhhCCcccccccCcc
Q 026583 17 TTSHCRICHEEEFESCN--SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~--~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y 72 (236)
....|.||.++...+.+ +-..||. |.+|..||++|++. ..+||+|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhhh
Confidence 46899999998865322 4688988 99999999999965 67999999944
No 25
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00071 Score=62.44 Aligned_cols=53 Identities=34% Similarity=0.876 Sum_probs=43.7
Q ss_pred CCCCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 12 KSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 12 ~s~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
++.++....|-+|++.-..+ --+||. |.|=-.|+..|+.+|. .||+|+..++|
T Consensus 233 ~~i~~a~~kC~LCLe~~~~p---SaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~p 285 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNP---SATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQP 285 (293)
T ss_pred ccCCCCCCceEEEecCCCCC---CcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCC
Confidence 45567779999999988643 479999 9999999999997654 59999998864
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00051 Score=67.57 Aligned_cols=58 Identities=22% Similarity=0.502 Sum_probs=42.3
Q ss_pred cCCCCCCCCCeeeEcccCcc---c-----------CCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 10 DFKSNPETTSHCRICHEEEF---E-----------SCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 10 d~~s~s~~~~~CRIC~~e~~---e-----------~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+...-.+....|-||...-+ + ..+-+.+||+ |.+|+.||++|.+. .+..||.|+.+.+
T Consensus 563 h~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~-ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 563 HLEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDT-YKLICPVCRCPLP 634 (636)
T ss_pred cccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhh-hcccCCccCCCCC
Confidence 33333456689999986542 1 1234677999 99999999999974 2479999998765
No 27
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.80 E-value=0.00092 Score=44.61 Aligned_cols=44 Identities=25% Similarity=0.616 Sum_probs=37.8
Q ss_pred eeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccC
Q 026583 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (236)
Q Consensus 20 ~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~ 70 (236)
.|-||++...+...+++++|. |.+...|+.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 488999998545567899998 999999999999 67889999985
No 28
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.55 E-value=0.0012 Score=42.81 Aligned_cols=39 Identities=28% Similarity=0.817 Sum_probs=30.0
Q ss_pred eeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccc
Q 026583 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEIC 68 (236)
Q Consensus 21 CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiC 68 (236)
|.||++...+ .....||. |.+.+.|+.+|++. +.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC--cCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 7899887654 22578888 99999999999965 5799988
No 29
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.001 Score=50.65 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=37.2
Q ss_pred CeeeEcccCccc---------CCCccccccccCCCcccccHHHHHHHHHhh-CCcccccccCccc
Q 026583 19 SHCRICHEEEFE---------SCNSLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEICLQEYG 73 (236)
Q Consensus 19 ~~CRIC~~e~~e---------~~~~li~PC~C~GSlk~vH~~CL~rWl~~k-~~~~CeiCk~~y~ 73 (236)
..|-||....+. .+-+|+-- .|+ +.+|..|+.+|++.+ .+..||.|++.|+
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeE
Confidence 488899877642 12234322 444 899999999999876 4689999999886
No 30
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.18 E-value=0.0058 Score=42.57 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=36.3
Q ss_pred eeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 20 ~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
.|.||.+-..+ +.+.||. +-+-+.|+.+|+.. +.+||+|+..+.
T Consensus 3 ~Cpi~~~~~~~---Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMKD---PVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCCC---CEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 68999887654 4778875 89999999999976 568999998874
No 31
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0067 Score=54.52 Aligned_cols=51 Identities=18% Similarity=0.511 Sum_probs=42.8
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhC-CcccccccCccc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKG-NTTCEICLQEYG 73 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~-~~~CeiCk~~y~ 73 (236)
++..-.|-||++...+ +.+++|. |.+==.||.+|+..+. ...||+||....
T Consensus 44 ~~~~FdCNICLd~akd---PVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---PVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccCC---CEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccc
Confidence 4566789999998865 4899999 9999999999998764 567799998864
No 32
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0037 Score=60.13 Aligned_cols=47 Identities=23% Similarity=0.646 Sum_probs=33.5
Q ss_pred CCCeeeEcccCcccCCCcc--ccccccCCCcccccHHHHHHHHHhhCC-ccccccc
Q 026583 17 TTSHCRICHEEEFESCNSL--EAPCACSGTVKFAHRDCIQRWCYEKGN-TTCEICL 69 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~l--i~PC~C~GSlk~vH~~CL~rWl~~k~~-~~CeiCk 69 (236)
....|.||- ..-+....+ +..|. |.+|..||++|+..-.. +.||||+
T Consensus 3 i~A~C~Ic~-d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 3 IMAECHICI-DGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ccceeeEec-cCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 357899993 332222222 45555 99999999999976654 6999999
No 33
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.53 E-value=0.011 Score=45.45 Aligned_cols=26 Identities=31% Similarity=0.568 Sum_probs=23.6
Q ss_pred ccccHHHHHHHHHhhCCcccccccCccc
Q 026583 46 KFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 46 k~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
|.+|..|+.||++.| ..||+++++|.
T Consensus 56 HaFH~HCI~rWL~Tk--~~CPld~q~w~ 81 (88)
T COG5194 56 HAFHDHCIYRWLDTK--GVCPLDRQTWV 81 (88)
T ss_pred hHHHHHHHHHHHhhC--CCCCCCCceeE
Confidence 899999999999875 49999999986
No 34
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.35 E-value=0.011 Score=56.95 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=39.4
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+....|.||++.... +.+.||. |.|...|+.+|+.. ...||+|+..+.
T Consensus 24 e~~l~C~IC~d~~~~---PvitpCg-----H~FCs~CI~~~l~~--~~~CP~Cr~~~~ 71 (397)
T TIGR00599 24 DTSLRCHICKDFFDV---PVLTSCS-----HTFCSLCIRRCLSN--QPKCPLCRAEDQ 71 (397)
T ss_pred ccccCCCcCchhhhC---ccCCCCC-----CchhHHHHHHHHhC--CCCCCCCCCccc
Confidence 355799999987754 4678988 99999999999965 358999999875
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.27 E-value=0.0056 Score=59.71 Aligned_cols=47 Identities=23% Similarity=0.555 Sum_probs=36.4
Q ss_pred CCCeeeEcccCcccC-CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcc
Q 026583 17 TTSHCRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~-~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y 72 (236)
+.+.|.+|++--+++ ...+..+|+ |-+|-.|+++|-+ .+||+|++.-
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~----~scpvcR~~q 221 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWD----SSCPVCRYCQ 221 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecc-----cccchHHHhhccc----CcChhhhhhc
Confidence 559999999887654 334556666 9999999999974 5899998543
No 36
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=95.04 E-value=0.028 Score=48.18 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=22.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhh-hhhhcccccc-CCCCCCch
Q 026583 172 LRACGIILPMYVLMRTITAIHNSI-RREYHHVTYD-DETSNSDE 213 (236)
Q Consensus 172 Lra~Gillp~yI~~rai~~iq~~r-rrq~~~q~~~-~~~~~~~~ 213 (236)
|-.+-.++..|+++|++|.=.+.| .|-|.++... ++.+|..-
T Consensus 101 l~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~~~~~Em~pL 144 (163)
T PF06679_consen 101 LVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTRAENVEMAPL 144 (163)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccceeecccCCCcccceeccc
Confidence 333334577889999887322111 1555554433 44555533
No 37
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.00 E-value=0.011 Score=55.47 Aligned_cols=53 Identities=21% Similarity=0.427 Sum_probs=40.7
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh---------------------CCcccccccCcccC
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK---------------------GNTTCEICLQEYGP 74 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k---------------------~~~~CeiCk~~y~~ 74 (236)
...+|-||+-...++....+++|. ||+|..||.|.+++- -...|++|+.+..+
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 446788888777666555689988 999999999988641 14679999977643
No 38
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=94.77 E-value=0.019 Score=38.75 Aligned_cols=41 Identities=27% Similarity=0.631 Sum_probs=23.7
Q ss_pred eeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh--CCcccc
Q 026583 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--GNTTCE 66 (236)
Q Consensus 21 CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k--~~~~Ce 66 (236)
|.||.+-.++.+.+++.||. |-+=++||++|.+.+ +..+||
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 78898843445567899988 999999999999865 466675
No 39
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.011 Score=54.55 Aligned_cols=60 Identities=23% Similarity=0.547 Sum_probs=44.9
Q ss_pred ecCCCCCCCCCeeeEcccCcccC-------CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 9 EDFKSNPETTSHCRICHEEEFES-------CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 9 ~d~~s~s~~~~~CRIC~~e~~e~-------~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+....+..+...|-+|-..-..+ ++.-...|+ |-+|+-|++-|+-.-++.+||-||.+..
T Consensus 215 ~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 215 SGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 34455666789999996443211 234466777 9999999999998888899999998764
No 40
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=93.25 E-value=0.045 Score=36.45 Aligned_cols=40 Identities=28% Similarity=0.664 Sum_probs=28.7
Q ss_pred eeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCC--cccccc
Q 026583 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGN--TTCEIC 68 (236)
Q Consensus 21 CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~--~~CeiC 68 (236)
|.||++-..+ +...+|. |-+=+.||.+|.+..+. ..||+|
T Consensus 1 CpiC~~~~~~---Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 7789887754 4788998 99999999999976544 589987
No 41
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.05 Score=43.76 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=22.9
Q ss_pred ccccHHHHHHHHHhhCCcccccccCccc
Q 026583 46 KFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 46 k~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
|-||..|+.||++. +..||+|.+++.
T Consensus 83 HaFH~hCisrWlkt--r~vCPLdn~eW~ 108 (114)
T KOG2930|consen 83 HAFHFHCISRWLKT--RNVCPLDNKEWV 108 (114)
T ss_pred hHHHHHHHHHHHhh--cCcCCCcCccee
Confidence 89999999999955 569999998865
No 42
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.05 E-value=0.034 Score=54.00 Aligned_cols=49 Identities=27% Similarity=0.642 Sum_probs=40.8
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
....|.||-+.+.+ .-+-||. |..-..||..|..+.+..+||.|+.+.+
T Consensus 368 TFeLCKICaendKd---vkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 368 TFELCKICAENDKD---VKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred hHHHHHHhhccCCC---ccccccc-----chHHHHHHHhhcccCCCCCCCceeeEec
Confidence 34689999776643 3589998 8888999999999888999999997764
No 43
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.33 E-value=0.11 Score=36.09 Aligned_cols=46 Identities=26% Similarity=0.527 Sum_probs=21.2
Q ss_pred eeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh--CCcccccccCccc
Q 026583 21 CRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--GNTTCEICLQEYG 73 (236)
Q Consensus 21 CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k--~~~~CeiCk~~y~ 73 (236)
|.+|.++.+.. ..-..||.|. ++-|+.=|.+-+ .+..||-||.+|+
T Consensus 1 cp~C~e~~d~~-d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDET-DKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CC-CTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccC-CCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 56787666432 3358999998 455666666554 4789999999984
No 44
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.13 Score=48.91 Aligned_cols=49 Identities=24% Similarity=0.563 Sum_probs=34.3
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCccc-ccHHHHHHHHHhhCCcccccccCccc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~-vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
++..+.|-||+.+.-+ .++.||+ |. .=..|.+.-. -....||||++.+.
T Consensus 287 ~~~gkeCVIClse~rd---t~vLPCR-----HLCLCs~Ca~~Lr--~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 287 SESGKECVICLSESRD---TVVLPCR-----HLCLCSGCAKSLR--YQTNNCPICRQPIE 336 (349)
T ss_pred ccCCCeeEEEecCCcc---eEEecch-----hhehhHhHHHHHH--HhhcCCCccccchH
Confidence 3668999999988754 3789987 21 2335655544 34578999998875
No 45
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.48 E-value=0.087 Score=51.11 Aligned_cols=60 Identities=25% Similarity=0.517 Sum_probs=44.0
Q ss_pred CCCeeeEcccCcccCCCcc-ccccccCCCcccccHHHHHHHHHhhCCcccccccCcc----cCCccCCCC
Q 026583 17 TTSHCRICHEEEFESCNSL-EAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY----GPGYTAPSK 81 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~l-i~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y----~~~y~~~p~ 81 (236)
.+-.|-.|-+.....++.+ -.||. |.+|..|++..+...+..+||-|++-. .|+|...|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~ 428 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVP 428 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCc
Confidence 3456888876654322234 68998 999999999999888899999999433 267766443
No 46
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=91.40 E-value=0.057 Score=42.81 Aligned_cols=11 Identities=100% Similarity=1.398 Sum_probs=0.0
Q ss_pred cccCCCCchhh
Q 026583 217 EEEDDDDDDEE 227 (236)
Q Consensus 217 ~~~~~~~~~~~ 227 (236)
|+|||||||++
T Consensus 27 EEedDddddee 37 (101)
T PF09026_consen 27 EEEDDDDDDEE 37 (101)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 33333333333
No 47
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=0.17 Score=49.25 Aligned_cols=52 Identities=19% Similarity=0.554 Sum_probs=40.4
Q ss_pred CCCeeeEcccCcccC-CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcc
Q 026583 17 TTSHCRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~-~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y 72 (236)
....|.||+++..-+ +--++.| .|. +.+-..|+.+|+-.+-...||+|+.+-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCChh
Confidence 457899999998543 3335555 666 999999999999755678999999763
No 48
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=90.83 E-value=0.11 Score=43.27 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=44.0
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCc---ccccHHHHHHHHHhhCCcccccccCcc----cCCccCCCCcchhHHH
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTV---KFAHRDCIQRWCYEKGNTTCEICLQEY----GPGYTAPSKKSQLIEA 88 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSl---k~vH~~CL~rWl~~k~~~~CeiCk~~y----~~~y~~~p~~~pl~~~ 88 (236)
.-..+|+||++.-.++.+...-+|. |++ |.+|..|++||-++++ +-+| ...|.-||+...-...
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~~--g~lnLEkmfc~~C~~rw~~~~~-------rDPfnR~I~y~F~fPf~~~~ec~~ 94 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTDG--GTLNLEKMFCADCDKRWRRERN-------RDPFNRNIKYWFNFPFKNLEECKS 94 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEecC--CeehHHHHHHHHHHHHHHhhcc-------CCCcccceEEEEeCCCCCHHHHHH
Confidence 3468999999988664455666665 444 5699999999965432 1223 2234557765444444
Q ss_pred Hhhcccccc
Q 026583 89 AVTISLQIP 97 (236)
Q Consensus 89 ~i~~~~~i~ 97 (236)
.++.+-.++
T Consensus 95 ~L~~~~~FI 103 (134)
T PF05883_consen 95 FLEKSKGFI 103 (134)
T ss_pred HHHhccCcC
Confidence 444443443
No 49
>PLN02189 cellulose synthase
Probab=90.59 E-value=0.3 Score=52.18 Aligned_cols=53 Identities=25% Similarity=0.529 Sum_probs=39.2
Q ss_pred CCCeeeEcccCcc-cCCCccccccc-cCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~-e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+...|+||-++-. +.++.....|+ |. --|=+.|.. .-...|+..||+||++|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cye-yer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCYE-YERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCC---Cccccchhh-hhhhcCCccCcccCCchh
Confidence 4469999988753 22334678898 76 558889984 334458999999999997
No 50
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.51 E-value=0.26 Score=46.27 Aligned_cols=51 Identities=16% Similarity=0.437 Sum_probs=38.0
Q ss_pred CCeeeEcccCcc--cCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 18 TSHCRICHEEEF--ESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 18 ~~~CRIC~~e~~--e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
...|.+|....- .+...++++|. |-+=.+|+.+.+. ++...||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~-~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFV-RGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhc-CCCCCCCCCCCccch
Confidence 368999998653 22233677787 8899999999763 467799999988753
No 51
>PLN02436 cellulose synthase A
Probab=90.10 E-value=0.35 Score=51.90 Aligned_cols=66 Identities=21% Similarity=0.477 Sum_probs=44.7
Q ss_pred eeEEeec-CC---CCCCCCCeeeEcccCcc-cCCCccccccc-cCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 4 VVLFVED-FK---SNPETTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 4 vvl~~~d-~~---s~s~~~~~CRIC~~e~~-e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
||+..++ .. .+.-....|+||-++-. ..++.+...|+ |. --|=+.|.. .-...|+..||+||++|+
T Consensus 18 ~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cye-yer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 18 VLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCYE-YERREGNQACPQCKTRYK 89 (1094)
T ss_pred eEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCC---Cccccchhh-hhhhcCCccCcccCCchh
Confidence 5666552 21 22335569999987753 12334778888 66 558889984 334458999999999998
No 52
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=90.04 E-value=0.074 Score=55.35 Aligned_cols=27 Identities=22% Similarity=0.720 Sum_probs=23.9
Q ss_pred ccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 46 KFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 46 k~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
||+|..|+..|. +.-.+|++|+..|.-
T Consensus 146 H~FC~~Ci~sWs--R~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 146 HYFCEECVGSWS--RCAQTCPVDRGEFGE 172 (1134)
T ss_pred cccHHHHhhhhh--hhcccCchhhhhhhe
Confidence 999999999999 556799999999953
No 53
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=0.18 Score=42.44 Aligned_cols=45 Identities=29% Similarity=0.578 Sum_probs=39.5
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccC
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~ 70 (236)
++...|.||++...++ .+.||. |.+=+.|+..|.. ....||.|+.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---cccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 4678999999998764 789998 9999999999997 7799999995
No 54
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=0.41 Score=41.91 Aligned_cols=49 Identities=24% Similarity=0.545 Sum_probs=37.6
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y 72 (236)
++..-|.||++...+.. +.-+-|. |.|=+.|++.-+ |....||+|++..
T Consensus 129 ~~~~~CPiCl~~~sek~-~vsTkCG-----HvFC~~Cik~al--k~~~~CP~C~kkI 177 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKV-PVSTKCG-----HVFCSQCIKDAL--KNTNKCPTCRKKI 177 (187)
T ss_pred ccccCCCceecchhhcc-ccccccc-----hhHHHHHHHHHH--HhCCCCCCccccc
Confidence 34578999999987531 2234444 999999999999 6789999999754
No 55
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=88.56 E-value=0.17 Score=48.31 Aligned_cols=45 Identities=22% Similarity=0.467 Sum_probs=37.7
Q ss_pred CeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
-.|-||++-..- ++++||. |-+-.-|+...+ +.+..||.|..++.
T Consensus 24 LRC~IC~eyf~i---p~itpCs-----HtfCSlCIR~~L--~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 24 LRCGICFEYFNI---PMITPCS-----HTFCSLCIRKFL--SYKPQCPTCCVTVT 68 (442)
T ss_pred HHHhHHHHHhcC---ceecccc-----chHHHHHHHHHh--ccCCCCCceecccc
Confidence 579999987753 5999987 889999999999 45679999998764
No 56
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=88.46 E-value=0.29 Score=35.87 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=32.2
Q ss_pred CeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
-.|.|+++--.+ +.+.||. +.+=+.|+.+|+.. +..+||+|+.+..
T Consensus 5 f~CpIt~~lM~d---PVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 5 FLCPITGELMRD---PVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLS 50 (73)
T ss_dssp GB-TTTSSB-SS---EEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-S
T ss_pred cCCcCcCcHhhC---ceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCC
Confidence 357777666543 4788866 88999999999965 5789999998765
No 57
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.29 E-value=0.34 Score=46.09 Aligned_cols=51 Identities=22% Similarity=0.521 Sum_probs=37.7
Q ss_pred CCCeeeEcccCcccCC-----CccccccccCCCcccccHHHHHHHHHhhC-----CcccccccCcc
Q 026583 17 TTSHCRICHEEEFESC-----NSLEAPCACSGTVKFAHRDCIQRWCYEKG-----NTTCEICLQEY 72 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~-----~~li~PC~C~GSlk~vH~~CL~rWl~~k~-----~~~CeiCk~~y 72 (236)
..+.|-||++...+.. .....+|+ |.+=.+|+.+|-..+. ...||+|+..-
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 4689999998875432 11224466 8888999999997665 68999999653
No 58
>PF14851 FAM176: FAM176 family
Probab=87.54 E-value=0.98 Score=38.46 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=9.8
Q ss_pred HHHHhhhhHHHHHHHHHHH
Q 026583 171 LLRACGIILPMYVLMRTIT 189 (236)
Q Consensus 171 ~Lra~Gillp~yI~~rai~ 189 (236)
+.-.+|+|+-..+++--|+
T Consensus 28 ~gVC~GLlLtLcllV~ris 46 (153)
T PF14851_consen 28 SGVCAGLLLTLCLLVIRIS 46 (153)
T ss_pred HHHHHHHHHHHHHHHhhhe
Confidence 4445666665555544443
No 59
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=86.70 E-value=0.36 Score=45.42 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=37.9
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
....|+||.+-..- +.++||. |-|-.-|+.+-+. .+-.||+|+..+.
T Consensus 24 s~lrC~IC~~~i~i---p~~TtCg-----HtFCslCIR~hL~--~qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISI---PCETTCG-----HTFCSLCIRRHLG--TQPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeec---ceecccc-----cchhHHHHHHHhc--CCCCCccccccHH
Confidence 45789999877643 4789998 8899999999994 4679999997653
No 60
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=86.38 E-value=0.87 Score=34.86 Aligned_cols=55 Identities=24% Similarity=0.468 Sum_probs=23.2
Q ss_pred CCCCCeeeEcccCcc-cCCCccccccc-cCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 15 PETTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 15 s~~~~~CRIC~~e~~-e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
.-+...|.||-++-. ..+..+...|+ |. --+=+.|..-=.++ |+..|+.|+++|+
T Consensus 6 ~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~---fPvCr~CyEYErke-g~q~CpqCkt~yk 62 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTENGEVFVACHECA---FPVCRPCYEYERKE-GNQVCPQCKTRYK 62 (80)
T ss_dssp --SS-B-SSS--B--B-SSSSB--S-SSS--------HHHHHHHHHT-S-SB-TTT--B--
T ss_pred hcCCcccccccCccccCCCCCEEEEEcccC---CccchhHHHHHhhc-CcccccccCCCcc
Confidence 345689999977653 12234566666 54 55888998766643 7899999999987
No 61
>PLN02195 cellulose synthase A
Probab=85.76 E-value=0.77 Score=48.96 Aligned_cols=53 Identities=25% Similarity=0.464 Sum_probs=36.8
Q ss_pred CCCeeeEcccCcc-cCCCccccccc-cCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~-e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+...|+||-++-. +.++....-|+ |. --|=+.|.+-=. .-|+..||+||++|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~---~pvCrpCyeyer-~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS---YPLCKACLEYEI-KEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC---Cccccchhhhhh-hcCCccCCccCCccc
Confidence 4568999987653 22233556676 54 458889974333 348999999999997
No 62
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=85.42 E-value=0.75 Score=49.48 Aligned_cols=53 Identities=23% Similarity=0.465 Sum_probs=37.0
Q ss_pred CCCeeeEcccCcc-cCCCccccccc-cCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~-e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+...|+||-++-. ..++.+.--|+ |. --|=+.|..-=. .-|+..||+||++|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~---FPVCrpCYEYEr-~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA---FPVCRPCYEYER-KDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC---Cccccchhhhhh-hcCCccCCccCCchh
Confidence 4569999987753 12333566777 44 448889974333 348999999999997
No 63
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=84.81 E-value=0.88 Score=43.56 Aligned_cols=35 Identities=20% Similarity=0.709 Sum_probs=27.7
Q ss_pred ccccccCCCcccccHHHHHHHHHhh-----------CCcccccccCccc
Q 026583 36 EAPCACSGTVKFAHRDCIQRWCYEK-----------GNTTCEICLQEYG 73 (236)
Q Consensus 36 i~PC~C~GSlk~vH~~CL~rWl~~k-----------~~~~CeiCk~~y~ 73 (236)
-.+|.|+ -.-=.+|+-||+.++ ++..||-|++.|=
T Consensus 306 C~~C~CR---PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 306 CQQCYCR---PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred Ccccccc---chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 3477787 455679999999876 4789999999873
No 64
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=84.64 E-value=0.7 Score=46.63 Aligned_cols=60 Identities=22% Similarity=0.538 Sum_probs=48.0
Q ss_pred CCCCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh---hCCcccccccCcccCCccCC
Q 026583 12 KSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQEYGPGYTAP 79 (236)
Q Consensus 12 ~s~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~---k~~~~CeiCk~~y~~~y~~~ 79 (236)
.....+..+|.+|++..++ .+++.|+ |-+-+.|+..++.. ..+.+||.|.....+..+.|
T Consensus 530 ~~enk~~~~C~lc~d~aed---~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAED---YIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred CccccCceeecccCChhhh---hHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 3445677999999988765 3789888 88999999999865 35799999999988776554
No 65
>PLN02400 cellulose synthase
Probab=83.56 E-value=1.2 Score=48.12 Aligned_cols=53 Identities=21% Similarity=0.500 Sum_probs=36.1
Q ss_pred CCCeeeEcccCcc-cCCCccccccc-cCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~-e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+...|+||-++-. ..++.+..-|+ |. --|=+.|..-=. .-|+..||+||++|+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa---FPVCRpCYEYER-keGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA---FPVCRPCYEYER-KDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC---Cccccchhheec-ccCCccCcccCCccc
Confidence 4569999987753 12233556676 44 447788863322 237999999999998
No 66
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=81.44 E-value=1.2 Score=49.80 Aligned_cols=55 Identities=24% Similarity=0.520 Sum_probs=38.8
Q ss_pred CCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh--------CCcccccccCccc
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--------GNTTCEICLQEYG 73 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k--------~~~~CeiCk~~y~ 73 (236)
+......|-||+.+--. -.||---|--|.+|-.|..+-+..+ +-..||||+.+.+
T Consensus 3482 kQD~DDmCmICFTE~L~-----AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALS-----AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhC-----CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 45577899999987643 2344322222999999998766543 4579999998876
No 67
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=81.18 E-value=1.2 Score=37.35 Aligned_cols=54 Identities=20% Similarity=0.517 Sum_probs=41.0
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
..-+|-||.+...+. .+..|=.|-|. +.---=|.+-|--.+-...||+|++.|+
T Consensus 79 ~lYeCnIC~etS~ee--~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEE--RFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchh--hcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccc
Confidence 457899999888653 48899888872 2334445788887777889999999997
No 68
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.43 E-value=1.7 Score=40.07 Aligned_cols=50 Identities=22% Similarity=0.514 Sum_probs=38.7
Q ss_pred CCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHH-HHHhhCCcccccccCcc
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQR-WCYEKGNTTCEICLQEY 72 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~r-Wl~~k~~~~CeiCk~~y 72 (236)
.++....|-||++..+. +.-+||. |.|=-.||.. |... ....||+|++.-
T Consensus 211 ip~~d~kC~lC~e~~~~---ps~t~Cg-----HlFC~~Cl~~~~t~~-k~~~CplCRak~ 261 (271)
T COG5574 211 IPLADYKCFLCLEEPEV---PSCTPCG-----HLFCLSCLLISWTKK-KYEFCPLCRAKV 261 (271)
T ss_pred ccccccceeeeecccCC---ccccccc-----chhhHHHHHHHHHhh-ccccCchhhhhc
Confidence 34556789999988764 3678988 9999999999 9853 345699999764
No 69
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.04 E-value=0.89 Score=48.50 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=7.9
Q ss_pred CcccccccCccc
Q 026583 62 NTTCEICLQEYG 73 (236)
Q Consensus 62 ~~~CeiCk~~y~ 73 (236)
..+|..|.+-+.
T Consensus 1213 vqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1213 VQTCSPLQTYLT 1224 (1516)
T ss_pred cccCcHHHHhcC
Confidence 467888877443
No 70
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=78.73 E-value=2.5 Score=36.38 Aligned_cols=38 Identities=21% Similarity=0.657 Sum_probs=26.1
Q ss_pred CCeeeEcccCcccCCCccccccc----------cCCCcccccHHHHHHHHHhh
Q 026583 18 TSHCRICHEEEFESCNSLEAPCA----------CSGTVKFAHRDCIQRWCYEK 60 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~----------C~GSlk~vH~~CL~rWl~~k 60 (236)
...|.||++-.-. ....-|. |. +.|-|..||.|..+..
T Consensus 2 d~~CpICme~PHN---AVLLlCSS~~kgcRpymc~--Ts~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 2 DVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCD--TSYRHSNCLDQFKKAY 49 (162)
T ss_pred CccCceeccCCCc---eEEEEeccccCCccccccC--CccchhHHHHHHHHHh
Confidence 5789999987642 1233332 55 3688999999998753
No 71
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=78.41 E-value=1.3 Score=46.55 Aligned_cols=56 Identities=20% Similarity=0.475 Sum_probs=41.7
Q ss_pred CCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh-----CCcccccccCccc
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK-----GNTTCEICLQEYG 73 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k-----~~~~CeiCk~~y~ 73 (236)
.+....+|-||.+.-....+.|- |+.--+.||..|+++|-..+ ..+.||-|+..++
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WS----C~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWS----CKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred HhcCceEEEEeeeeccccCCcee----cchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 44566899999988866555552 33333999999999999754 3689999997664
No 72
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.33 E-value=2 Score=42.81 Aligned_cols=49 Identities=22% Similarity=0.504 Sum_probs=37.6
Q ss_pred CCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh---CCcccccccCcccC
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK---GNTTCEICLQEYGP 74 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k---~~~~CeiCk~~y~~ 74 (236)
...|.||+++..-. ..+-|. |++=-.||.+.++.+ +-..||+|+..+.+
T Consensus 186 ~~~CPICL~~~~~p---~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc---cccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 68999999987543 344466 999999998877653 56899999987653
No 73
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=76.67 E-value=3.2 Score=40.01 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhcc
Q 026583 178 ILPMYVLMRTITAIHNSIRREYHH 201 (236)
Q Consensus 178 llp~yI~~rai~~iq~~rrrq~~~ 201 (236)
+--..+++|.+|...++|+|+-++
T Consensus 315 i~l~~~vvR~vR~~~~hr~~~~~y 338 (374)
T PF01528_consen 315 ICLIMMVVRLVRAFLYHRRRSTRY 338 (374)
T ss_pred HHHHHHHHHHHHHHHHhhccchhh
Confidence 345567789999888776554434
No 74
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=76.36 E-value=18 Score=28.89 Aligned_cols=44 Identities=32% Similarity=0.532 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHHhhhhHHHHH
Q 026583 140 LTFTVLLLVKHLFAVLTGN---TDDYPFALVTVLLLRACGIILPMYV 183 (236)
Q Consensus 140 ~i~~vlLllrh~l~l~~~g---~~d~~f~l~tl~~Lra~Gillp~yI 183 (236)
++++++++++-.+.+.... -+.|||.++++++-=.+.++-|+..
T Consensus 8 ~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~Il 54 (108)
T PF06210_consen 8 IIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLIL 54 (108)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665433 4788999988766655555555533
No 75
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=74.98 E-value=3.7 Score=31.54 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHH
Q 026583 178 ILPMYVLMRTITAIH 192 (236)
Q Consensus 178 llp~yI~~rai~~iq 192 (236)
++-+-|++|++-++.
T Consensus 15 ~~iiaIvvW~iv~ie 29 (81)
T PF00558_consen 15 ALIIAIVVWTIVYIE 29 (81)
T ss_dssp HHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566777776655
No 76
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=74.91 E-value=3.8 Score=27.30 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=26.3
Q ss_pred CCchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 026583 160 DDYPFALVTVLLLRACGIILPMYVLMRTITAIHN 193 (236)
Q Consensus 160 ~d~~f~l~tl~~Lra~Gillp~yI~~rai~~iq~ 193 (236)
++|+.+.+--++.|.+|++.|...|+-....||+
T Consensus 3 g~~aas~LPsI~VPlVGlvfPai~Mallf~yIe~ 36 (38)
T PRK11877 3 GDFAASWLPWIFVPLVGWVFPAVFMVLLGRYITA 36 (38)
T ss_pred chHhHHhCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455445555678999999999999998888774
No 77
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=74.63 E-value=1 Score=33.98 Aligned_cols=34 Identities=26% Similarity=0.619 Sum_probs=25.5
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHH
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQR 55 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~r 55 (236)
.....|.+|...-..+ .-.+-||+ +.+|..|++|
T Consensus 76 ~~~~~C~vC~k~l~~~-~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNS-VFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCc-eEEEeCCC-----eEEecccccC
Confidence 3457799998877643 34578887 8999999864
No 78
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=74.59 E-value=3 Score=44.91 Aligned_cols=55 Identities=22% Similarity=0.479 Sum_probs=38.1
Q ss_pred CCCCCeeeEcccCcc-cCCCccccccc-cCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 15 PETTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 15 s~~~~~CRIC~~e~~-e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+-....|.||-++-. ..++.+..-|+ |. --|=+.|..-=. ..|+..||+||++|+
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~---fpvCr~cyeye~-~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCG---FPVCKPCYEYER-SEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCC---Cccccchhhhhh-hcCCccCCccCCchh
Confidence 336789999987753 12333556676 44 448889984333 348999999999997
No 79
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=73.87 E-value=2.2 Score=44.23 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=16.4
Q ss_pred HHHHHHhhhhHHHHHHHHH-HHHHHhhh-hhhh
Q 026583 169 VLLLRACGIILPMYVLMRT-ITAIHNSI-RREY 199 (236)
Q Consensus 169 l~~Lra~Gillp~yI~~ra-i~~iq~~r-rrq~ 199 (236)
|++.--+|||+.|.||+.. |+..+++| |||.
T Consensus 831 vViVVcVgfLv~mvvlGv~rir~~h~~~~r~q~ 863 (952)
T KOG1834|consen 831 VVIVVCVGFLVFMVVLGVLRIRDAHRRRRRRQK 863 (952)
T ss_pred EEEEeehhHHHHHHHHhheeeecccchhhhhhc
Confidence 3345556777777776532 34444443 4443
No 80
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=73.78 E-value=13 Score=33.17 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=11.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhh
Q 026583 172 LRACGIILPMYVLMRTITAIHNSIRRE 198 (236)
Q Consensus 172 Lra~Gillp~yI~~rai~~iq~~rrrq 198 (236)
+..++.++-+..++-++..+.+.|+++
T Consensus 50 ~~~i~~~~~~i~~~~~~~~~~~~~k~~ 76 (248)
T PF11368_consen 50 ISFIALLIIIILFLLTFYFIYKSRKYK 76 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 81
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=72.38 E-value=1.2 Score=43.58 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhhhhhc
Q 026583 171 LLRACGIILPMYVLMRTITAIHNSIRREYH 200 (236)
Q Consensus 171 ~Lra~Gillp~yI~~rai~~iq~~rrrq~~ 200 (236)
++.++++++.+.++++.+....++ |++++
T Consensus 358 VlgvavlivVv~viv~vc~~~rrr-R~~~~ 386 (439)
T PF02480_consen 358 VLGVAVLIVVVGVIVWVCLRCRRR-RRQRD 386 (439)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHhheeeeehhc-ccccc
Confidence 334444444444444444433333 34443
No 82
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=72.24 E-value=3.3 Score=39.95 Aligned_cols=61 Identities=20% Similarity=0.433 Sum_probs=42.1
Q ss_pred EEeecCCCCCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh--CCcccccccCccc
Q 026583 6 LFVEDFKSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK--GNTTCEICLQEYG 73 (236)
Q Consensus 6 l~~~d~~s~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k--~~~~CeiCk~~y~ 73 (236)
+.+|...+...++..|..|.++-+-++ .-..||.|. .-+-+-| |-+-+ -+-.||-|+..|.
T Consensus 2 m~~qei~~sedeed~cplcie~mditd-knf~pc~cg---y~ic~fc---~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 2 MNVQEIHNSEDEEDYCPLCIEPMDITD-KNFFPCPCG---YQICQFC---YNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cchhhccccccccccCccccccccccc-CCcccCCcc---cHHHHHH---HHHHHhhccCCChHhhhhcc
Confidence 346667766667788999998875332 247899997 3344444 54444 3679999999994
No 83
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=71.43 E-value=2.4 Score=28.44 Aligned_cols=23 Identities=26% Similarity=0.720 Sum_probs=15.9
Q ss_pred ccccHHHHHHHHHhhCCcccccc
Q 026583 46 KFAHRDCIQRWCYEKGNTTCEIC 68 (236)
Q Consensus 46 k~vH~~CL~rWl~~k~~~~CeiC 68 (236)
.-+|..|++++++.+.+..||.|
T Consensus 21 ~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 21 VRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -EE-HHHHHHHTTT-SS-B-TTT
T ss_pred chHHHHHHHHHHhcCCCCCCcCC
Confidence 44999999999988777799987
No 84
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=69.59 E-value=1.8 Score=39.14 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=10.9
Q ss_pred cCCCCchhhhccCCCCC
Q 026583 219 EDDDDDDEEEQLDPRHS 235 (236)
Q Consensus 219 ~~~~~~~~~~~~~~~~~ 235 (236)
+||||+|-|+.|||||-
T Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (232)
T PRK12766 77 EEEEDADVETELRPRGL 93 (232)
T ss_pred hhhhhhhhhhhcccccc
Confidence 33344445788999984
No 85
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.25 E-value=2.9 Score=39.48 Aligned_cols=32 Identities=22% Similarity=0.742 Sum_probs=25.2
Q ss_pred cccCCCcccccHHHHHHHHHhh-----------CCcccccccCccc
Q 026583 39 CACSGTVKFAHRDCIQRWCYEK-----------GNTTCEICLQEYG 73 (236)
Q Consensus 39 C~C~GSlk~vH~~CL~rWl~~k-----------~~~~CeiCk~~y~ 73 (236)
|-|+ -.--++||.+|+..+ |+.+||.|++.|-
T Consensus 323 c~cr---p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 323 CICR---PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccc---cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 4466 566789999999654 5789999999874
No 86
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=68.64 E-value=1.4 Score=40.33 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=27.6
Q ss_pred cccccccCCCc-ccccHHHHHHHHHhhCCcccccccCcc
Q 026583 35 LEAPCACSGTV-KFAHRDCIQRWCYEKGNTTCEICLQEY 72 (236)
Q Consensus 35 li~PC~C~GSl-k~vH~~CL~rWl~~k~~~~CeiCk~~y 72 (236)
|+ -|.|.+-- .|||..|+--=..-+|++.|+-|+..-
T Consensus 232 Mi-~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 232 MI-GCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred cc-ccCCCCCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 54 47776666 999999976544456899999998653
No 87
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=66.92 E-value=4.2 Score=36.61 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=24.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhhhhh
Q 026583 169 VLLLRACGIILPMYVLMRTITAIHNSIRREY 199 (236)
Q Consensus 169 l~~Lra~Gillp~yI~~rai~~iq~~rrrq~ 199 (236)
+.++-++|+++++|++-|...|+-++|+|-.
T Consensus 286 ~~~~~~~G~~~~~f~LYK~g~~~~~~~~r~~ 316 (354)
T PF05795_consen 286 SPVLSVLGIPLIFFLLYKFGSWFNRRRGRRR 316 (354)
T ss_pred hhhhhhHHHHHHHHHHhccchhhcccccccc
Confidence 4577788999999999998888887765543
No 88
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=66.58 E-value=4.3 Score=29.09 Aligned_cols=46 Identities=15% Similarity=0.387 Sum_probs=32.5
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
....|..|...... ..+.||. |++=+.|..-| +..-||+|+++|..
T Consensus 6 ~~~~~~~~~~~~~~---~~~~pCg-----H~I~~~~f~~~----rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK---GTVLPCG-----HLICDNCFPGE----RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccc---ccccccc-----ceeeccccChh----hccCCCCCCCcccC
Confidence 34567777655443 3689999 88877775443 45789999999873
No 89
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=66.54 E-value=24 Score=28.26 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 026583 179 LPMYVLMRTITAIH 192 (236)
Q Consensus 179 lp~yI~~rai~~iq 192 (236)
+-+.+.+|.-.|-+
T Consensus 32 lLIalaaKC~~~~k 45 (102)
T PF15176_consen 32 LLIALAAKCPVWYK 45 (102)
T ss_pred HHHHHHHHhHHHHH
Confidence 44444556555444
No 90
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=66.38 E-value=1.9 Score=33.14 Aligned_cols=15 Identities=73% Similarity=1.119 Sum_probs=0.0
Q ss_pred cCCCCchhhhccCCC
Q 026583 219 EDDDDDDEEEQLDPR 233 (236)
Q Consensus 219 ~~~~~~~~~~~~~~~ 233 (236)
+||+||||||+.=|+
T Consensus 41 DDD~dDdeeee~m~r 55 (81)
T PF14812_consen 41 DDDDDDDEEEEPMPR 55 (81)
T ss_dssp ---------------
T ss_pred cccccchhhcccccc
Confidence 333444455554444
No 91
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=65.73 E-value=3.9 Score=35.75 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 026583 179 LPMYVLMRTITAIHNSIRRE 198 (236)
Q Consensus 179 lp~yI~~rai~~iq~~rrrq 198 (236)
+|.+++.-.|.|+|+||+|+
T Consensus 163 iPAlLLL~lv~~lQrRR~~~ 182 (183)
T PF11874_consen 163 IPALLLLGLVAWLQRRRRRK 182 (183)
T ss_pred HHHHHHHHHHHHHhhhhccC
Confidence 57777888899999998664
No 92
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=63.74 E-value=3.5 Score=36.34 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=11.9
Q ss_pred HHHhhhhhhhcccccc
Q 026583 190 AIHNSIRREYHHVTYD 205 (236)
Q Consensus 190 ~iq~~rrrq~~~q~~~ 205 (236)
|+|+||-+|.+.|..+
T Consensus 149 WFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 149 WFQNRRTKHKRMQQED 164 (197)
T ss_pred hhhhhhHHHHHHHHHh
Confidence 7999987777676653
No 93
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.67 E-value=4.3 Score=39.84 Aligned_cols=13 Identities=15% Similarity=-0.026 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHH
Q 026583 177 IILPMYVLMRTIT 189 (236)
Q Consensus 177 illp~yI~~rai~ 189 (236)
-+.|++.-.-..+
T Consensus 239 ~~~~~l~~~~~~t 251 (514)
T KOG3130|consen 239 SHTPCLKDVASST 251 (514)
T ss_pred ccchHhhcCCCcC
Confidence 3455554444443
No 94
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=62.07 E-value=3.2 Score=27.01 Aligned_cols=17 Identities=24% Similarity=0.598 Sum_probs=13.3
Q ss_pred cccccccCcccCCccCC
Q 026583 63 TTCEICLQEYGPGYTAP 79 (236)
Q Consensus 63 ~~CeiCk~~y~~~y~~~ 79 (236)
.+|+.|+..|...|.+|
T Consensus 2 r~C~~Cg~~Yh~~~~pP 18 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPP 18 (36)
T ss_dssp EEETTTTEEEETTTB--
T ss_pred cCcCCCCCccccccCCC
Confidence 47999999999888654
No 95
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=59.18 E-value=11 Score=30.34 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=2.6
Q ss_pred HHhhhhh
Q 026583 191 IHNSIRR 197 (236)
Q Consensus 191 iq~~rrr 197 (236)
+-+||+|
T Consensus 22 ~~rRR~r 28 (130)
T PF12273_consen 22 HNRRRRR 28 (130)
T ss_pred HHHHHhh
Confidence 3344333
No 96
>COG4420 Predicted membrane protein [Function unknown]
Probab=58.93 E-value=38 Score=29.95 Aligned_cols=47 Identities=34% Similarity=0.547 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhhhhHHHHHHH
Q 026583 139 ALTFTVLLLVKHLFAVLTG---NTDDYPFALVTVLLLRACGIILPMYVLM 185 (236)
Q Consensus 139 a~i~~vlLllrh~l~l~~~---g~~d~~f~l~tl~~Lra~Gillp~yI~~ 185 (236)
.+.+++++++|-.+.+... .-+.|||.++.+++--.+.|--|+..|.
T Consensus 61 il~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~AaiqAp~IlmS 110 (191)
T COG4420 61 ILTFTLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAAIQAPLILMS 110 (191)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence 3667777888887777533 3689999999887777776666665443
No 97
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=56.61 E-value=28 Score=28.28 Aligned_cols=12 Identities=33% Similarity=0.274 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 026583 136 RSLALTFTVLLL 147 (236)
Q Consensus 136 r~~a~i~~vlLl 147 (236)
|-+..+|+-.+.
T Consensus 70 RGlfyif~G~l~ 81 (136)
T PF08507_consen 70 RGLFYIFLGTLC 81 (136)
T ss_pred HHHHHHHHHHHH
Confidence 334444433333
No 98
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.41 E-value=7.3 Score=28.24 Aligned_cols=46 Identities=24% Similarity=0.451 Sum_probs=28.3
Q ss_pred CeeeEcccCcccCCCccccccccCCCccc-ccHHHHHHHHHhhCCcccccccCccc
Q 026583 19 SHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li~PC~C~GSlk~-vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
.+|-||.+..-++ .+--|. |. .-..|-.+-.+ .....||||+.+.+
T Consensus 8 dECTICye~pvds---VlYtCG-----HMCmCy~Cg~rl~~-~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDS---VLYTCG-----HMCMCYACGLRLKK-ALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchH---HHHHcc-----hHHhHHHHHHHHHH-ccCCcCcchhhHHH
Confidence 8999999887553 344443 11 22355433332 26779999998764
No 99
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=55.46 E-value=16 Score=33.72 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026583 131 TAACCRSLALTFTVLLLVKHLFAVL-TGNTDDYPFALVTVLLLRACGIILPMYVLMRTITAI 191 (236)
Q Consensus 131 ~~~~cr~~a~i~~vlLllrh~l~l~-~~g~~d~~f~l~tl~~Lra~Gillp~yI~~rai~~i 191 (236)
|..+.|.=+++|.++-++--++++. +.|+-+++...-.++++-+..||+-++.++|+++|.
T Consensus 190 G~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~yy~ 251 (256)
T PF09788_consen 190 GPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSIYYC 251 (256)
T ss_pred cchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhheeE
Confidence 4456777777776665555555553 345555444433334555555667788888888763
No 100
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=55.35 E-value=41 Score=31.64 Aligned_cols=16 Identities=0% Similarity=0.088 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHHHHH
Q 026583 175 CGIILPMYVLMRTITA 190 (236)
Q Consensus 175 ~Gillp~yI~~rai~~ 190 (236)
+.+++-+|++.|.++.
T Consensus 49 ~~~~~~~~~~~~~~~~ 64 (398)
T PRK10747 49 ILAMVVLFAIEWLLRR 64 (398)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333445555555543
No 101
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.14 E-value=8.3 Score=36.43 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=35.2
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCCcc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYT 77 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~y~ 77 (236)
...++|-||+....- +...||. |-+=..|++-=.. .++.+|.+|+.++.-.+-
T Consensus 5 ~~~~eC~IC~nt~n~---Pv~l~C~-----HkFCyiCiKGsy~-ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 5 TKKKECLICYNTGNC---PVNLYCF-----HKFCYICIKGSYK-NDKKTCAVCRFPIDSTID 57 (324)
T ss_pred ccCCcceeeeccCCc---Ccccccc-----chhhhhhhcchhh-cCCCCCceecCCCCcchh
Confidence 356899999887643 3567776 6666666544331 246789999999864443
No 102
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.78 E-value=5.2 Score=35.40 Aligned_cols=40 Identities=33% Similarity=0.617 Sum_probs=26.2
Q ss_pred CeeeEcccCcccCCCccccccccCCCccccc-HHHHHHHHHhhCCcccccccCcc
Q 026583 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAH-RDCIQRWCYEKGNTTCEICLQEY 72 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH-~~CL~rWl~~k~~~~CeiCk~~y 72 (236)
..||.|.+.+. ..+..||+ |+.| ..| .++ ..+||+|+..-
T Consensus 159 ~~Cr~C~~~~~---~VlllPCr-----Hl~lC~~C-----~~~-~~~CPiC~~~~ 199 (207)
T KOG1100|consen 159 RSCRKCGEREA---TVLLLPCR-----HLCLCGIC-----DES-LRICPICRSPK 199 (207)
T ss_pred ccceecCcCCc---eEEeeccc-----ceEecccc-----ccc-CccCCCCcChh
Confidence 44999977764 25899998 5433 122 222 66899999653
No 103
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=54.59 E-value=6.6 Score=36.46 Aligned_cols=43 Identities=33% Similarity=0.685 Sum_probs=32.7
Q ss_pred eeEcccCcccC-CCccccccccCCCcccccHHHHHHHHHhhCCcccccccC
Q 026583 21 CRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (236)
Q Consensus 21 CRIC~~e~~e~-~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~ 70 (236)
|.||.+....+ ..+-..||. ++.|..|++.-+.+ +.+||+|+.
T Consensus 161 cPic~e~l~~s~~~~~~~~Cg-----H~~h~~cf~e~~~~--~y~CP~C~~ 204 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCG-----HYMHSRCFEEMICE--GYTCPICSK 204 (276)
T ss_pred CchhHHHhccccccCCccCcc-----cchHHHHHHHHhcc--CCCCCcccc
Confidence 88998776544 233478887 99998888887753 399999997
No 104
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=53.41 E-value=14 Score=35.95 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=38.9
Q ss_pred CCCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCC
Q 026583 13 SNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (236)
Q Consensus 13 s~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~ 75 (236)
...++...|-||-....-+ -+.||+ |-.-..|--|-..-..+..|++|+++...+
T Consensus 56 dtDEen~~C~ICA~~~TYs---~~~PC~-----H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 56 DTDEENMNCQICAGSTTYS---ARYPCG-----HQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccccccceeEEecCCceEE---EeccCC-----chHHHHHHHHHHHHHhccCCCccccccceE
Confidence 3446778999997765432 479998 545556666665556778999999998643
No 105
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=50.77 E-value=88 Score=25.51 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHH
Q 026583 141 TFTVLLLVKHLFAVLTGNTDDYPFA 165 (236)
Q Consensus 141 i~~vlLllrh~l~l~~~g~~d~~f~ 165 (236)
+..++++++..+|=.+.-.....++
T Consensus 95 ~~~l~lif~e~lPk~l~~~~~~~~~ 119 (183)
T PF01595_consen 95 ITLLILIFGEILPKALARRHPEKIA 119 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344456666666554433333333
No 106
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=50.27 E-value=5.4 Score=43.15 Aligned_cols=52 Identities=29% Similarity=0.584 Sum_probs=35.5
Q ss_pred CCCCCeeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHHhhCCcccccccC
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~ 70 (236)
-+....|-||++.+.++.+ .+.-|. |. ..||+.|.-.=....|.+.|--|.+
T Consensus 216 ~~~D~~C~iC~~~~~~n~n-~ivfCD~Cn---l~VHq~Cygi~~ipeg~WlCr~Cl~ 268 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSN-VIVFCDGCN---LAVHQECYGIPFIPEGQWLCRRCLQ 268 (1051)
T ss_pred cCCCccceeecccccCCCc-eEEEcCCCc---chhhhhccCCCCCCCCcEeehhhcc
Confidence 3567899999999876443 556665 66 9999999873233335666666653
No 107
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=50.05 E-value=13 Score=25.64 Aligned_cols=35 Identities=17% Similarity=0.435 Sum_probs=15.1
Q ss_pred ccccccccCCCcccccHHHH--HHHHHh---hCCcccccccCc
Q 026583 34 SLEAPCACSGTVKFAHRDCI--QRWCYE---KGNTTCEICLQE 71 (236)
Q Consensus 34 ~li~PC~C~GSlk~vH~~CL--~rWl~~---k~~~~CeiCk~~ 71 (236)
.+..|++=+ .-.|..|. ..|+.. ++.+.||+|+++
T Consensus 11 ~i~~P~Rg~---~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 11 RIRIPVRGK---NCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-SSEEEET---T--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred EEEeCccCC---cCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 466777633 56788884 567753 467899999863
No 108
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=49.95 E-value=1.3e+02 Score=23.91 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 026583 182 YVLMRTI 188 (236)
Q Consensus 182 yI~~rai 188 (236)
+||-|+.
T Consensus 62 ~ivWR~a 68 (96)
T PF07214_consen 62 NIVWRVA 68 (96)
T ss_pred HHHHHHH
Confidence 3344444
No 109
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=49.69 E-value=7.3 Score=35.36 Aligned_cols=6 Identities=33% Similarity=0.817 Sum_probs=2.3
Q ss_pred Cchhhh
Q 026583 223 DDDEEE 228 (236)
Q Consensus 223 ~~~~~~ 228 (236)
||||++
T Consensus 144 deDd~~ 149 (244)
T PF04889_consen 144 DEDDTA 149 (244)
T ss_pred cchHHH
Confidence 333333
No 110
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=48.97 E-value=9.2 Score=39.75 Aligned_cols=48 Identities=17% Similarity=0.508 Sum_probs=37.1
Q ss_pred CCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
.-.|..|....-+ ..+.-|. |.|=..|++.-+.. ...+||.|+..|.+
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~-----H~FC~~Cvq~r~et-RqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCG-----HVFCEECVQTRYET-RQRKCPKCNAAFGA 690 (698)
T ss_pred ceeCCCccCchhh---HHHHhcc-----hHHHHHHHHHHHHH-hcCCCCCCCCCCCc
Confidence 3679999744432 3677776 99999999999976 46899999999863
No 111
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=48.73 E-value=9.4 Score=32.33 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=4.3
Q ss_pred chhhhccCCC
Q 026583 224 DDEEEQLDPR 233 (236)
Q Consensus 224 ~~~~~~~~~~ 233 (236)
|++++..||-
T Consensus 76 ~~~~~d~nP~ 85 (149)
T PF08595_consen 76 DEDAADENPY 85 (149)
T ss_pred hhhhhccCch
Confidence 3333345553
No 112
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.62 E-value=1.3e+02 Score=28.70 Aligned_cols=8 Identities=25% Similarity=0.837 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 026583 181 MYVLMRTI 188 (236)
Q Consensus 181 ~yI~~rai 188 (236)
.|+|.|+.
T Consensus 278 ~~lI~rm~ 285 (318)
T KOG1607|consen 278 FYLILRMA 285 (318)
T ss_pred HHHHHHHH
Confidence 33444443
No 113
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=47.98 E-value=7.8 Score=41.79 Aligned_cols=7 Identities=29% Similarity=0.676 Sum_probs=3.5
Q ss_pred CCccccC
Q 026583 121 YPQCSSA 127 (236)
Q Consensus 121 Y~~~~~~ 127 (236)
-+.|+.+
T Consensus 1302 Ldqc~Vt 1308 (1516)
T KOG1832|consen 1302 LDQCAVT 1308 (1516)
T ss_pred ccceEEE
Confidence 3346555
No 114
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.25 E-value=16 Score=32.44 Aligned_cols=56 Identities=20% Similarity=0.516 Sum_probs=32.4
Q ss_pred CCCCCCeeeEcccCcccCCCcccccc---ccCCCcccccHHHHHHHHHhh---C------CcccccccCccc
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPC---ACSGTVKFAHRDCIQRWCYEK---G------NTTCEICLQEYG 73 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC---~C~GSlk~vH~~CL~rWl~~k---~------~~~CeiCk~~y~ 73 (236)
+++....|-||..-.-++.. --.-| .|. |-+|+-||..|++.- . --.||-|..+..
T Consensus 161 kdd~~~~cgicyayqldGTi-pDqtCdN~qCg---kpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 161 KDDELGACGICYAYQLDGTI-PDQTCDNIQCG---KPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cchhhhcccceeeeecCCcc-ccccccccccC---CcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 44555677777643322210 01112 233 899999999999642 1 246888876654
No 115
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=46.17 E-value=19 Score=28.31 Aligned_cols=6 Identities=0% Similarity=-0.069 Sum_probs=2.6
Q ss_pred HHHhhh
Q 026583 190 AIHNSI 195 (236)
Q Consensus 190 ~iq~~r 195 (236)
|||..+
T Consensus 40 Wl~sI~ 45 (92)
T PF15243_consen 40 WLQSIA 45 (92)
T ss_pred HHHHHH
Confidence 444443
No 116
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=45.62 E-value=43 Score=31.55 Aligned_cols=11 Identities=0% Similarity=0.117 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 026583 179 LPMYVLMRTIT 189 (236)
Q Consensus 179 lp~yI~~rai~ 189 (236)
..+|++.|.++
T Consensus 53 ~~~~~~~~l~~ 63 (409)
T TIGR00540 53 AIIFAFEWGLR 63 (409)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 117
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=45.47 E-value=53 Score=27.42 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhCCCCCchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q 026583 136 RSLALTFTVLLLVKHL-FAVLTGNTDDYPFALVTVLLLRACGIILPMYVLMRTITAIHNSIR 196 (236)
Q Consensus 136 r~~a~i~~vlLllrh~-l~l~~~g~~d~~f~l~tl~~Lra~Gillp~yI~~rai~~iq~~rr 196 (236)
|-.+++..+.++++-. +|+..+++.- +..++-|+.|+++-+.+++..+.++-++.+
T Consensus 25 ~~g~~s~~~YlllG~~GlPVFagg~gG-----~~~l~gPTgGyl~gf~~~a~i~g~~~~~~~ 81 (148)
T PF02632_consen 25 RRGFLSVLLYLLLGAIGLPVFAGGSGG-----LGYLLGPTGGYLLGFPLAALIIGLLAERLK 81 (148)
T ss_pred HHHHHHHHHHHHHHHHCCchhcCCCCc-----hHHHhcCCChHHHHHHHHHHHHHHHHHhcc
Confidence 3345666777788866 7777777554 233478999999999999999999987743
No 118
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=45.09 E-value=10 Score=42.27 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=15.0
Q ss_pred cccHHHHHHHHHhhCCccccccc
Q 026583 47 FAHRDCIQRWCYEKGNTTCEICL 69 (236)
Q Consensus 47 ~vH~~CL~rWl~~k~~~~CeiCk 69 (236)
.+-..|++.|=.-++...|-+=+
T Consensus 1394 ~ALEqcckdaNal~nsircgi~k 1416 (3015)
T KOG0943|consen 1394 LALEQCCKDANALKNSIRCGIIK 1416 (3015)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhh
Confidence 34566777777666667776554
No 119
>PF13974 YebO: YebO-like protein
Probab=42.99 E-value=34 Score=26.29 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=10.1
Q ss_pred HHhhhhHHHHHHHHHHH
Q 026583 173 RACGIILPMYVLMRTIT 189 (236)
Q Consensus 173 ra~Gillp~yI~~rai~ 189 (236)
-.+|+++.+||.=-+++
T Consensus 8 ~lv~livWFFVnRaSvR 24 (80)
T PF13974_consen 8 LLVGLIVWFFVNRASVR 24 (80)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34566678887644433
No 120
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=42.02 E-value=85 Score=29.23 Aligned_cols=39 Identities=10% Similarity=0.237 Sum_probs=27.2
Q ss_pred CCCchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Q 026583 159 TDDYPFALVTVLLLRACGIILPMYVLMRTITAIHNSIRR 197 (236)
Q Consensus 159 ~~d~~f~l~tl~~Lra~Gillp~yI~~rai~~iq~~rrr 197 (236)
.+.+...+.-+.+.|.+++++|..|+.+.-....+|+++
T Consensus 268 ~~~~~~~~~~~Yt~py~~l~lP~li~~~~~~~~~~R~~~ 306 (328)
T PF02117_consen 268 PETFHNIVLWFYTFPYAALSLPLLIIYRIRRIRRQRKRK 306 (328)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555667889999999999997766655544433
No 121
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.80 E-value=30 Score=32.44 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=40.0
Q ss_pred CCCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 13 SNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 13 s~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
|......+|.+|.+...- +..+.||. |.+=..|+..=+...-.-+||.|+.+-.
T Consensus 234 s~~t~~~~C~~Cg~~Pti--P~~~~~C~-----HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTI--PHVIGKCG-----HIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCCCCC--Ceeecccc-----ceeehhhhhhhhcchhhcccCccCCCCc
Confidence 334567999999665432 22477788 8888899888777666789999998764
No 123
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=41.30 E-value=1e+02 Score=26.14 Aligned_cols=61 Identities=15% Similarity=0.044 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHH-HHhCCCCCchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Q 026583 134 CCRSLALTFTVLLLVK---HLFA-VLTGNTDDYPFALVTVLLLRACGIILPMYVLMRTITAIHNSIRR 197 (236)
Q Consensus 134 ~cr~~a~i~~vlLllr---h~l~-l~~~g~~d~~f~l~tl~~Lra~Gillp~yI~~rai~~iq~~rrr 197 (236)
+-..+.+.++-++-=. -++. ....+..-+...+..+|.|.|+ ||+.++.....++.++.||
T Consensus 119 ~~~~~lG~l~gllPCg~~y~~l~~A~~s~s~~~G~l~m~~FgLGT~---p~ll~~~~~~~~l~~~~~~ 183 (199)
T PF13386_consen 119 WGAFLLGFLNGLLPCGPVYFALALAAASGSPLYGALLMLAFGLGTL---PALLLAGLLAGKLSRRLRR 183 (199)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHH
Confidence 4445555555543211 1111 2334566666777778888886 9999999999998876543
No 124
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.91 E-value=21 Score=34.76 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=36.1
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
.+...|.||....-. .+..||+ |-.-..|+.+-+. +...|=.||+...
T Consensus 420 sEd~lCpICyA~pi~---Avf~PC~-----H~SC~~CI~qHlm--N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPIN---AVFAPCS-----HRSCYGCITQHLM--NCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccch---hhccCCC-----CchHHHHHHHHHh--cCCeeeEecceee
Confidence 366899999987743 4899998 5566678887773 5668999997754
No 125
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=39.41 E-value=21 Score=22.77 Aligned_cols=23 Identities=13% Similarity=0.340 Sum_probs=19.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHh
Q 026583 171 LLRACGIILPMYVLMRTITAIHN 193 (236)
Q Consensus 171 ~Lra~Gillp~yI~~rai~~iq~ 193 (236)
+.+.+|++.|...|+-....||+
T Consensus 7 ~VPlVglvfPai~Ma~lf~yIe~ 29 (31)
T TIGR03052 7 FVPLVGLVFPAVFMALLFRYIEA 29 (31)
T ss_pred ehhHHHHHHHHHHHHHHHHheec
Confidence 56889999999999988877764
No 126
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.28 E-value=40 Score=31.02 Aligned_cols=51 Identities=20% Similarity=0.479 Sum_probs=37.7
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh------CCcccccccCcc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK------GNTTCEICLQEY 72 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k------~~~~CeiCk~~y 72 (236)
.-...|+.|-....+++ ....-|- +.+|-+||..|-..- ....||-|..+.
T Consensus 48 DY~pNC~LC~t~La~gd-t~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGD-TTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCCceeCCccccCc-ceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 34577999976665442 3456666 999999999998642 257999999875
No 127
>PF15539 CAF1-p150_C2: CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
Probab=39.24 E-value=20 Score=33.46 Aligned_cols=33 Identities=30% Similarity=0.310 Sum_probs=17.7
Q ss_pred HHHHhhhhhhhccccccCCCCCCchhhhcccCC
Q 026583 189 TAIHNSIRREYHHVTYDDETSNSDEEEEEEEDD 221 (236)
Q Consensus 189 ~~iq~~rrrq~~~q~~~~~~~~~~~~~~~~~~~ 221 (236)
+-+-++||.--+...-|.+..--+-||+||||+
T Consensus 216 t~fmkk~~~~~q~~~~d~dgfqadtee~eeed~ 248 (292)
T PF15539_consen 216 TKFMKKRRHDEQVGAGDMDGFQADTEEDEEEDG 248 (292)
T ss_pred HHHHHhcCcccccccccCcccccCcccccccCC
Confidence 334445444335566677766556555555543
No 128
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=38.85 E-value=25 Score=36.38 Aligned_cols=39 Identities=18% Similarity=0.423 Sum_probs=26.4
Q ss_pred CeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh
Q 026583 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK 60 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k 60 (236)
..|-+|-..... ......-|.|.| +..|..|+.-|+++.
T Consensus 19 ~mc~l~~s~G~~-~ag~m~ac~~c~--~~yH~~cvt~~~~~~ 57 (694)
T KOG4443|consen 19 LMCPLCGSSGKG-RAGRLLACSDCG--QKYHPYCVTSWAQHA 57 (694)
T ss_pred hhhhhhcccccc-ccCcchhhhhhc--ccCCcchhhHHHhHH
Confidence 445555433332 222467788777 899999999999875
No 129
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=38.73 E-value=31 Score=28.50 Aligned_cols=13 Identities=38% Similarity=0.429 Sum_probs=6.0
Q ss_pred hhhccccccCCCC
Q 026583 197 REYHHVTYDDETS 209 (236)
Q Consensus 197 rq~~~q~~~~~~~ 209 (236)
+..+...++++.+
T Consensus 108 k~LG~eVSddE~~ 120 (136)
T PF04871_consen 108 KELGEEVSDDEDS 120 (136)
T ss_pred HHcCCCccCCccc
Confidence 4444444554444
No 130
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=38.63 E-value=1.9e+02 Score=28.09 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHH
Q 026583 134 CCRSLALTFTVL-LLVKHLFAV 154 (236)
Q Consensus 134 ~cr~~a~i~~vl-Lllrh~l~l 154 (236)
.|-.+++||... .-+||-+-+
T Consensus 286 l~~~iF~iFv~~wIysRHyln~ 307 (395)
T COG5058 286 LATFIFGIFVFIWIYSRHYLNL 307 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666655 446665443
No 131
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=38.62 E-value=58 Score=31.83 Aligned_cols=24 Identities=4% Similarity=0.141 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q 026583 167 VTVLLLRACGIILPMYVLMRTITA 190 (236)
Q Consensus 167 ~tl~~Lra~Gillp~yI~~rai~~ 190 (236)
+..+.+|.+-+.++..+.+..+.+
T Consensus 194 ~sg~~~r~i~~~i~~~i~~~~~~~ 217 (465)
T PF03606_consen 194 FSGFWFRQIPFVIFTLIAIAYVHR 217 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777666655554444433
No 132
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=38.37 E-value=12 Score=37.20 Aligned_cols=52 Identities=17% Similarity=0.386 Sum_probs=38.7
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh------CCcccccccCc
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK------GNTTCEICLQE 71 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k------~~~~CeiCk~~ 71 (236)
...+|-+|+.......|.|+-=|+|+ .|+|+.|-+--+.-. ..+.|-.|...
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~---~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCR---QWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccc---cHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 33569999977754444688777888 999999988777422 36899999844
No 133
>PRK11246 hypothetical protein; Provisional
Probab=37.16 E-value=41 Score=30.35 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=7.0
Q ss_pred ccccCCCCCCchhhh
Q 026583 202 VTYDDETSNSDEEEE 216 (236)
Q Consensus 202 q~~~~~~~~~~~~~~ 216 (236)
.++-..++..+++|+
T Consensus 196 ~~l~~~~~~~~~~~~ 210 (218)
T PRK11246 196 FLLTASKPVPEEEES 210 (218)
T ss_pred eeeccCCCCcccccc
Confidence 345555555444433
No 134
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=36.81 E-value=54 Score=21.64 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=19.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHh
Q 026583 171 LLRACGIILPMYVLMRTITAIHN 193 (236)
Q Consensus 171 ~Lra~Gillp~yI~~rai~~iq~ 193 (236)
+.+.+|++.|...|+-...-+|+
T Consensus 10 ~VPlVGlvfPai~Ma~lf~yIe~ 32 (36)
T CHL00186 10 LVPLVGLVFPAIAMASLFLYIQK 32 (36)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhh
Confidence 67999999999999988877774
No 135
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=36.72 E-value=1.3e+02 Score=27.33 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026583 138 LALTFTVLLLVKHLFAVLTGNTDDYPFALVTVLLLRACGIILPMYVLMRTI 188 (236)
Q Consensus 138 ~a~i~~vlLllrh~l~l~~~g~~d~~f~l~tl~~Lra~Gillp~yI~~rai 188 (236)
..++|.+.+++.-.+++++. .+.+.+ ++.-.+|+|..++|+.|-.
T Consensus 31 ml~a~l~~~~v~v~ig~l~~---~~~~~~---i~gi~~g~l~am~vl~rra 75 (224)
T PF13829_consen 31 MLGAFLGPIAVFVLIGLLFG---SWWYWL---IIGILLGLLAAMIVLSRRA 75 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHc---cHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34455555666666777665 222222 3444567788888888755
No 136
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=35.86 E-value=25 Score=31.74 Aligned_cols=45 Identities=18% Similarity=0.361 Sum_probs=35.8
Q ss_pred CeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
-.|-||...+.+ +.++-|. |++-..|..+=. +....|-+|+..-.
T Consensus 197 F~C~iCKkdy~s---pvvt~CG-----H~FC~~Cai~~y--~kg~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYES---PVVTECG-----HSFCSLCAIRKY--QKGDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccc---hhhhhcc-----hhHHHHHHHHHh--ccCCcceecchhhc
Confidence 389999888865 4788888 889889977665 56789999997643
No 137
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=35.45 E-value=31 Score=36.19 Aligned_cols=57 Identities=28% Similarity=0.500 Sum_probs=37.9
Q ss_pred CCCeeeEcccCcccCCCc--cccccccCCCcccccHHHHHHH---HHhh-----CCcccccccCccc
Q 026583 17 TTSHCRICHEEEFESCNS--LEAPCACSGTVKFAHRDCIQRW---CYEK-----GNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~--li~PC~C~GSlk~vH~~CL~rW---l~~k-----~~~~CeiCk~~y~ 73 (236)
..+.|.||.|+.-++... --.-|+=.|--+-||-.|-|+- +.+. +-.+|--|++.|.
T Consensus 116 fnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 116 FNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred hcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 458999998886543211 1345553444489999999874 3333 3468999998874
No 138
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=35.10 E-value=1.7e+02 Score=24.42 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Q 026583 136 RSLALTFTVLLLVKHLFAVLTGNT 159 (236)
Q Consensus 136 r~~a~i~~vlLllrh~l~l~~~g~ 159 (236)
.++++++.++++..-..+++..+.
T Consensus 8 ~i~~iilgilli~~gI~~Lv~~~~ 31 (191)
T PF04156_consen 8 SIILIILGILLIASGIAALVLFIS 31 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555566666666665554
No 139
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=34.96 E-value=45 Score=25.00 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=12.2
Q ss_pred HhhhhHHHHHHHHHH
Q 026583 174 ACGIILPMYVLMRTI 188 (236)
Q Consensus 174 a~Gillp~yI~~rai 188 (236)
..|+.++.||+++.|
T Consensus 45 ~~~~~ii~Yiia~~i 59 (70)
T COG1983 45 LTGFGIIAYIIAALI 59 (70)
T ss_pred chhHHHHHHHHHHHH
Confidence 567778999998877
No 140
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=34.27 E-value=14 Score=36.11 Aligned_cols=25 Identities=44% Similarity=0.708 Sum_probs=5.3
Q ss_pred chhhhcccCCCCchhhh--ccCCCCCC
Q 026583 212 DEEEEEEEDDDDDDEEE--QLDPRHSV 236 (236)
Q Consensus 212 ~~~~~~~~~~~~~~~~~--~~~~~~~~ 236 (236)
+.+++||.|.|||||++ +|+..|++
T Consensus 223 ~~~~~e~~dsd~~ee~~~iel~~~hPL 249 (404)
T PF12753_consen 223 ENEIEEGLDSDDEEEEEEIELSENHPL 249 (404)
T ss_dssp -----------------T--TTTTTTH
T ss_pred cccccccccccccccccceeeCCCCCc
Confidence 34444444444444444 78888863
No 141
>PRK10263 DNA translocase FtsK; Provisional
Probab=34.06 E-value=1.4e+02 Score=33.75 Aligned_cols=7 Identities=29% Similarity=0.672 Sum_probs=2.9
Q ss_pred HHhhhhH
Q 026583 173 RACGIIL 179 (236)
Q Consensus 173 ra~Gill 179 (236)
|++|+++
T Consensus 115 RliGlLL 121 (1355)
T PRK10263 115 RIIGVLA 121 (1355)
T ss_pred HHHHHHH
Confidence 3444444
No 142
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=34.04 E-value=19 Score=24.82 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=15.9
Q ss_pred hCCcccccccCccc-CCccCCCCcc
Q 026583 60 KGNTTCEICLQEYG-PGYTAPSKKS 83 (236)
Q Consensus 60 k~~~~CeiCk~~y~-~~y~~~p~~~ 83 (236)
+...+||+|+..-+ ..|..||...
T Consensus 5 Rs~~kCELC~a~~~L~vy~Vpp~~~ 29 (47)
T smart00782 5 RCESKCELCGSDSPLVVYAVPPSSD 29 (47)
T ss_pred HcCCcccCcCCCCCceEEecCCCCC
Confidence 44578999998765 3566666443
No 143
>PHA03283 envelope glycoprotein E; Provisional
Probab=33.39 E-value=40 Score=34.15 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=4.6
Q ss_pred hhhhhhhcc
Q 026583 193 NSIRREYHH 201 (236)
Q Consensus 193 ~~rrrq~~~ 201 (236)
++|||-|++
T Consensus 427 ~~~~~~y~i 435 (542)
T PHA03283 427 RSNRKPYEV 435 (542)
T ss_pred hhcCCcccc
Confidence 333566655
No 144
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=32.64 E-value=1.1e+02 Score=25.91 Aligned_cols=26 Identities=15% Similarity=0.186 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHH-hhhhHHHHHHHHH
Q 026583 162 YPFALVTVLLLRA-CGIILPMYVLMRT 187 (236)
Q Consensus 162 ~~f~l~tl~~Lra-~Gillp~yI~~ra 187 (236)
.......+|++|+ +|+++|-=.+.-.
T Consensus 72 ~~~~~y~l~~iPll~g~l~p~~~L~S~ 98 (182)
T PF09323_consen 72 KKLWSYFLFLIPLLIGFLFPPASLDSS 98 (182)
T ss_pred cccHHHHHHHHHHHHHHcCCCcCccHH
Confidence 3444445667776 5666665555433
No 145
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.63 E-value=30 Score=34.09 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=36.6
Q ss_pred CCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh------CCcccccccC
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK------GNTTCEICLQ 70 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k------~~~~CeiCk~ 70 (236)
.-.|-||+++..-..-....||. |++=++|+...+..- ....||-|+.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~-----Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCS-----HVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecccc-----hHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 36799999887533344589999 999999999998642 3578988773
No 146
>PF14143 YrhC: YrhC-like protein
Probab=32.29 E-value=82 Score=23.68 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026583 137 SLALTFTVLLLVKHLFA 153 (236)
Q Consensus 137 ~~a~i~~vlLllrh~l~ 153 (236)
.+-+++.++|-+|-.+|
T Consensus 15 ~vLLAvs~FlYiG~viP 31 (72)
T PF14143_consen 15 FVLLAVSTFLYIGTVIP 31 (72)
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 34556666666665555
No 147
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=31.75 E-value=22 Score=36.07 Aligned_cols=22 Identities=41% Similarity=0.836 Sum_probs=13.9
Q ss_pred CchhhhcccCCCCchhhhccCC
Q 026583 211 SDEEEEEEEDDDDDDEEEQLDP 232 (236)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~ 232 (236)
.+.+.|++|||||.|++..+|-
T Consensus 183 ~dgda~sdEdedd~D~Dve~D~ 204 (653)
T KOG2548|consen 183 ADGDAESDEDEDDEDEDVEFDS 204 (653)
T ss_pred cccccccccccccccccccccc
Confidence 3444456677777777777664
No 148
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=30.63 E-value=27 Score=24.56 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=19.3
Q ss_pred ccccHHHHHHHHHhhCCcccccccCccc
Q 026583 46 KFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 46 k~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
||.=..||..-+ +.+..||||+++.+
T Consensus 21 HYLCl~CLt~ml--~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 21 HYLCLNCLTLML--SRSDRCPICGKPLP 46 (50)
T ss_dssp -EEEHHHHHHT---SSSSEETTTTEE--
T ss_pred hhHHHHHHHHHh--ccccCCCcccCcCc
Confidence 899999999888 56779999998764
No 149
>PF04532 DUF587: Protein of unknown function (DUF587); InterPro: IPR007618 This domain is found at the N-termini of some human herpesvirus U58 proteins, and some cytomegalovirus UL87 proteins. This region is always found N-terminal to the UL87 (IPR004285 from INTERPRO), which has no known function.
Probab=30.40 E-value=15 Score=32.90 Aligned_cols=28 Identities=25% Similarity=0.621 Sum_probs=20.0
Q ss_pred cccCcccCCCc-cccccccCCCcccccHH
Q 026583 24 CHEEEFESCNS-LEAPCACSGTVKFAHRD 51 (236)
Q Consensus 24 C~~e~~e~~~~-li~PC~C~GSlk~vH~~ 51 (236)
|..++.+.++- ...|+.|.|.+-|||++
T Consensus 93 CyCdeWd~~eyl~~~~~~C~GP~LYVhr~ 121 (215)
T PF04532_consen 93 CYCDEWDTNEYLAECAYFCRGPLLYVHRK 121 (215)
T ss_pred eeecceehhhHHhhCCcccCCceEEEEcc
Confidence 55555443222 37899999999999994
No 150
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=29.92 E-value=27 Score=23.08 Aligned_cols=15 Identities=53% Similarity=1.052 Sum_probs=12.4
Q ss_pred CCcccccccCcccCC
Q 026583 61 GNTTCEICLQEYGPG 75 (236)
Q Consensus 61 ~~~~CeiCk~~y~~~ 75 (236)
+.++|+.|+-.|.++
T Consensus 12 ~~~~C~~CgM~Y~~~ 26 (41)
T PF13878_consen 12 GATTCPTCGMLYSPG 26 (41)
T ss_pred CCcCCCCCCCEECCC
Confidence 568999999998754
No 151
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=29.71 E-value=32 Score=25.13 Aligned_cols=19 Identities=21% Similarity=0.618 Sum_probs=12.3
Q ss_pred CcccccccCcccCCccCCC
Q 026583 62 NTTCEICLQEYGPGYTAPS 80 (236)
Q Consensus 62 ~~~CeiCk~~y~~~y~~~p 80 (236)
+..||+||.....+-..||
T Consensus 2 k~~CPlCkt~~n~gsk~~p 20 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSKDPP 20 (61)
T ss_pred CccCCcccchhhcCCCCCC
Confidence 4578888887765554443
No 152
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=29.66 E-value=8.5 Score=32.20 Aligned_cols=33 Identities=24% Similarity=0.674 Sum_probs=27.4
Q ss_pred ccccccccCCCcccccHHHHHHHHHhhCCccccccc
Q 026583 34 SLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (236)
Q Consensus 34 ~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk 69 (236)
.+-.||.|. -|+|-.|-...+.++|...|---+
T Consensus 32 RIDL~CGCS---yyihinC~~hGFTHRGthhCsS~~ 64 (134)
T PF01440_consen 32 RIDLPCGCS---YYIHINCHNHGFTHRGTHHCSSSR 64 (134)
T ss_pred ccccCCCCE---EEeecccCCCCcCCCcCccCCCcC
Confidence 356899999 999999999999988877775433
No 153
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=29.55 E-value=29 Score=31.84 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhccc
Q 026583 175 CGIILPMYVLMRTITAIHNSIRREYHHV 202 (236)
Q Consensus 175 ~Gillp~yI~~rai~~iq~~rrrq~~~q 202 (236)
+|+.|..+|++-.|.-+=.|||++.+||
T Consensus 277 VG~~La~lvlivLiaYli~Rrr~~~gYq 304 (306)
T PF01299_consen 277 VGAALAGLVLIVLIAYLIGRRRSRAGYQ 304 (306)
T ss_pred HHHHHHHHHHHHHHhheeEecccccccc
Confidence 5555555555555444444443433455
No 154
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=29.13 E-value=21 Score=19.23 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=6.6
Q ss_pred ccccccCccc
Q 026583 64 TCEICLQEYG 73 (236)
Q Consensus 64 ~CeiCk~~y~ 73 (236)
.|++|+..|.
T Consensus 2 ~C~~C~~~~~ 11 (24)
T PF13894_consen 2 QCPICGKSFR 11 (24)
T ss_dssp E-SSTS-EES
T ss_pred CCcCCCCcCC
Confidence 6999998875
No 155
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.02 E-value=35 Score=33.25 Aligned_cols=48 Identities=21% Similarity=0.575 Sum_probs=35.5
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
..+-.|-||..-... +..+||. |-+=..||++=+ .....||+|+..|.
T Consensus 82 ~sef~c~vc~~~l~~---pv~tpcg-----hs~c~~Cl~r~l--d~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTPCG-----HSFCLECLDRSL--DQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcCC---Ccccccc-----ccccHHHHHHHh--ccCCCCcccccccc
Confidence 345789999766543 4678998 666666888844 36789999999986
No 156
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=28.72 E-value=2.8e+02 Score=22.04 Aligned_cols=43 Identities=7% Similarity=0.247 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhhhhHHHHHH
Q 026583 138 LALTFTVLLLVKHLFAVLTGN--TDDYPFALVTVLLLRACGIILPMYVL 184 (236)
Q Consensus 138 ~a~i~~vlLllrh~l~l~~~g--~~d~~f~l~tl~~Lra~Gillp~yI~ 184 (236)
+.+.+.+-.+++-.++.-++. ...+.|++..+ .+|+.+-||-+
T Consensus 48 IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~l----llGv~~G~~n~ 92 (100)
T TIGR02230 48 IGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTML----IVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHH----HHHHHHHHHHH
Confidence 344445556777777777665 33566666433 33444555544
No 157
>PF13153 DUF3985: Protein of unknown function (DUF3985)
Probab=28.71 E-value=1.9e+02 Score=19.60 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHhhhhHHHHHHH
Q 026583 162 YPFALVTVLLLRACGIILPMYVLM 185 (236)
Q Consensus 162 ~~f~l~tl~~Lra~Gillp~yI~~ 185 (236)
|.+...+.+.+|...+++.++.+.
T Consensus 14 yv~~kvayvalkilai~lii~~iv 37 (44)
T PF13153_consen 14 YVFFKVAYVALKILAILLIIFLIV 37 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777776665544
No 158
>PF05009 EBV-NA3: Epstein-Barr virus nuclear antigen 3 (EBNA-3); InterPro: IPR007706 This family contains EBNA-3A, -3B, and -3C which are latent infection nuclear proteins important for Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)-induced B-cell immortalisation and the immune response to EBVG infection. ; GO: 0016032 viral reproduction, 0042025 host cell nucleus; PDB: 3SJV_H 3DXA_M.
Probab=28.18 E-value=19 Score=33.02 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=0.0
Q ss_pred CCCCCchhhhcccCCCCch-hhhccCCC
Q 026583 207 ETSNSDEEEEEEEDDDDDD-EEEQLDPR 233 (236)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 233 (236)
.+..+++|||+-|.|.||| |--+..|+
T Consensus 214 a~~Et~sE~eD~e~e~dde~elP~ivp~ 241 (255)
T PF05009_consen 214 AIVETSSESEDSESESDDEAELPYIVPR 241 (255)
T ss_dssp ----------------------------
T ss_pred CcccccccchhhccccCcccCCceecCC
Confidence 3344455555555555555 45566654
No 159
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=27.97 E-value=37 Score=24.01 Aligned_cols=44 Identities=14% Similarity=0.406 Sum_probs=26.6
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCccccc
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEI 67 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~Cei 67 (236)
....|.|.+....+ +..+. .|. |-+-++.+.+|++.++...||+
T Consensus 10 ~~~~CPiT~~~~~~---PV~s~-~C~---H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED---PVKSK-KCG---HTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS---EEEES-SS-----EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC---CcCcC-CCC---CeecHHHHHHHHHhcCCCCCCC
Confidence 34678887766543 34432 333 9999999999997778899998
No 160
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.87 E-value=28 Score=37.26 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=28.3
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHH
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCY 58 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~ 58 (236)
+....|++|-..-.. ..-++-||. |.+|+.||.+=..
T Consensus 815 ep~d~C~~C~~~ll~-~pF~vf~Cg-----H~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLI-KPFYVFPCG-----HCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhc-Ccceeeecc-----chHHHHHHHHHHH
Confidence 466899999666532 234699999 9999999987764
No 161
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=27.81 E-value=41 Score=27.10 Aligned_cols=28 Identities=11% Similarity=0.363 Sum_probs=15.5
Q ss_pred CchHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026583 161 DYPFALVTVLLLRACGIILPMYVLMRTI 188 (236)
Q Consensus 161 d~~f~l~tl~~Lra~Gillp~yI~~rai 188 (236)
||+.+..++|..-++...+..+|+.+.|
T Consensus 10 dyal~K~~~FA~L~i~~FiILLIi~~~I 37 (121)
T PF10669_consen 10 DYALTKIMFFAFLFIVVFIILLIITKSI 37 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666555555554445555555554
No 162
>COG2322 Predicted membrane protein [Function unknown]
Probab=27.69 E-value=1.4e+02 Score=26.08 Aligned_cols=55 Identities=35% Similarity=0.523 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh--CC----CCCchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026583 137 SLALTFTVLLLVKHLFAVLT--GN----TDDYPFALVTVLLLRACGIILPMYVLMRTITAI 191 (236)
Q Consensus 137 ~~a~i~~vlLllrh~l~l~~--~g----~~d~~f~l~tl~~Lra~Gillp~yI~~rai~~i 191 (236)
.++++|.++-+-||-++-.+ .| ..-|.|.|++=..|-++++-+..|.+.++++-.
T Consensus 84 ~l~l~FlvlYltr~~l~~~t~f~~~G~~k~~Y~~iL~~Hi~LA~i~vPLal~al~~a~~~~ 144 (177)
T COG2322 84 TLALVFLVLYLTRHGLGGETAFGGTGIYKGIYFFILITHIILAAINVPLALYALILAWKGL 144 (177)
T ss_pred HHHHHHHHHHHHHHhccccccCCCCeeeehHHHHHHHHHHHHHHHhhhHHHHHHHHHhcch
Confidence 45678888888888887765 33 345677777778999999999999999988643
No 163
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=27.23 E-value=2.4e+02 Score=20.22 Aligned_cols=57 Identities=12% Similarity=-0.006 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCC--CchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 026583 137 SLALTFTVLLLVKHLFAVLT-GNTD--DYPFALVTVLLLRACGIILPMYVLMRTITAIHNS 194 (236)
Q Consensus 137 ~~a~i~~vlLllrh~l~l~~-~g~~--d~~f~l~tl~~Lra~Gillp~yI~~rai~~iq~~ 194 (236)
++.+|--+..+.+..-.+.. .|.. +.+..+..++. ..+..+.++|-.-|+...+++-
T Consensus 12 iT~GIY~l~W~y~~~~~~~~~~~~~~~~~~~~~~lll~-ilt~gi~~i~w~~k~~~~i~~~ 71 (75)
T PF14018_consen 12 ITCGIYGLYWLYKIWKELNQLTGRIISPRSMTLWLLLS-ILTCGIYSIYWAYKLGNRINEE 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666543 3333 33334433333 3344456777777777777544
No 164
>PF10628 CotE: Outer spore coat protein E (CotE); InterPro: IPR018901 CotE is a morphogenic protein that is required for the assembly of the outer coat of the endospore [] and spore resistance to lysozyme []. CotE also regulates the expression of cotA, cotB, cotC and other genes encoding spore outer coat proteins []. The timing of cotE expression has been shown in Bacillus subtilis to affect spore coat morphology but not lysozyme resistance [].
Probab=26.65 E-value=28 Score=30.58 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=10.9
Q ss_pred cCCCCchhhhccCCC
Q 026583 219 EDDDDDDEEEQLDPR 233 (236)
Q Consensus 219 ~~~~~~~~~~~~~~~ 233 (236)
|.+.+|+|-|+|||.
T Consensus 160 d~~~~d~e~e~l~p~ 174 (182)
T PF10628_consen 160 DFEIEDEEFEDLDPD 174 (182)
T ss_pred ccccccchhhhcChh
Confidence 344557888999995
No 165
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.62 E-value=50 Score=30.74 Aligned_cols=50 Identities=6% Similarity=0.225 Sum_probs=37.1
Q ss_pred CCCeeeEcccCcccC-CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~-~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
..-.|.+|.+..... .-...+||. +-|-..|+.+.+ ++...||+|..+..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg-----~Vv~~ecvEkli--r~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSG-----HVVTKECVEKLI--RKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCC-----cEeeHHHHHHhc--cccccccCCCCcCc
Confidence 446899998887532 112355555 889999999999 67889999997764
No 166
>PLN03078 Putative tRNA pseudouridine synthase; Provisional
Probab=26.55 E-value=29 Score=34.93 Aligned_cols=21 Identities=38% Similarity=0.609 Sum_probs=11.6
Q ss_pred CCCCCchhhhcccCCCCchhh
Q 026583 207 ETSNSDEEEEEEEDDDDDDEE 227 (236)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~ 227 (236)
..++++++|+++|++|+|+|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~e~ 291 (513)
T PLN03078 271 EMSSSESEENHGEISEEDEED 291 (513)
T ss_pred ccccccccccccccccchhhh
Confidence 445556666666655555544
No 167
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=26.24 E-value=25 Score=37.18 Aligned_cols=10 Identities=10% Similarity=0.345 Sum_probs=4.4
Q ss_pred HHHHHHHHhh
Q 026583 185 MRTITAIHNS 194 (236)
Q Consensus 185 ~rai~~iq~~ 194 (236)
+.-++.+..-
T Consensus 871 ~n~lt~le~~ 880 (911)
T PF05086_consen 871 LNKLTKLEEY 880 (911)
T ss_pred hcchhHHHHH
Confidence 3444444443
No 168
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=26.12 E-value=2.1e+02 Score=21.11 Aligned_cols=31 Identities=10% Similarity=0.382 Sum_probs=21.6
Q ss_pred hCCCCCchHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026583 156 TGNTDDYPFALVTVLLLRACGIILPMYVLMRTITAIH 192 (236)
Q Consensus 156 ~~g~~d~~f~l~tl~~Lra~Gillp~yI~~rai~~iq 192 (236)
-+|.+|+++.. -.+|+++..|.++..++-+=
T Consensus 25 ~sGkee~A~~~------tLaG~iiVL~~Vi~~i~~LF 55 (64)
T TIGR02848 25 QSGKEEQAQMV------TLAGIVVVLFMVITLINDLF 55 (64)
T ss_pred HcCcHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 37889988633 35777788888777776543
No 169
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=25.41 E-value=23 Score=19.52 Aligned_cols=10 Identities=30% Similarity=0.979 Sum_probs=8.6
Q ss_pred ccccccCccc
Q 026583 64 TCEICLQEYG 73 (236)
Q Consensus 64 ~CeiCk~~y~ 73 (236)
.|+.|+..|.
T Consensus 2 ~C~~C~~~f~ 11 (23)
T PF00096_consen 2 KCPICGKSFS 11 (23)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCCccC
Confidence 6999998886
No 170
>PF04641 Rtf2: Rtf2 RING-finger
Probab=25.32 E-value=68 Score=28.90 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=34.0
Q ss_pred CCCCCeeeEcccCcccC-CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 15 PETTSHCRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~-~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
....-.|.|...+.... .-..+.||. +-+-..+|.+-- ....|++|+.+|.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG-----~V~s~~alke~k---~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCG-----CVFSEKALKELK---KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCC-----CEeeHHHHHhhc---ccccccccCCccc
Confidence 34556777776655322 223478999 457777777662 3567999999996
No 171
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=25.13 E-value=2.5e+02 Score=22.20 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhCCCC---CchHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026583 141 TFTVLLLVKHLFAVLTGNTD---DYPFALVTVLLLRACGIILPMYVLMRTI 188 (236)
Q Consensus 141 i~~vlLllrh~l~l~~~g~~---d~~f~l~tl~~Lra~Gillp~yI~~rai 188 (236)
.+.++.+++-.+++.....+ .+.......+.+-+++++.-+||+.|.+
T Consensus 51 l~~l~~l~g~I~~il~~~~~~~~~~~~~~~f~~i~~~i~ll~iiYi~~Kvi 101 (104)
T PF12420_consen 51 LPFLVPLIGLIFPILFSACVKIKIPDTNYIFFIIFITIILLVIIYIFIKVI 101 (104)
T ss_pred HHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHhhc
Confidence 33444455555555544111 1222333345788999999999999876
No 172
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=24.99 E-value=2.2e+02 Score=27.93 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 026583 141 TFTVLLLVKHLFAVLTGN 158 (236)
Q Consensus 141 i~~vlLllrh~l~l~~~g 158 (236)
-++++++++-.++..+.|
T Consensus 6 ~l~~ll~agi~~g~~~~~ 23 (400)
T COG3071 6 LLFVLLLAGIGVGLAIAG 23 (400)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344455555555555554
No 173
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=24.90 E-value=97 Score=24.49 Aligned_cols=52 Identities=19% Similarity=0.482 Sum_probs=34.9
Q ss_pred CCCCeeeEcccCcccCCCcccccc-------ccCCCcccccHHHHHHHHHhh-------CCcccccccCc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPC-------ACSGTVKFAHRDCIQRWCYEK-------GNTTCEICLQE 71 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC-------~C~GSlk~vH~~CL~rWl~~k-------~~~~CeiCk~~ 71 (236)
.....|..|.....+ ....| .|.+..+.+=..||.++..+. .++.||-|+--
T Consensus 5 ~~g~~CHqCrqKt~~----~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 5 VNGKTCHQCRQKTLD----FKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCCCchhhcCCCCC----CceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 356778888765543 23445 354445678889999999753 57899988753
No 174
>PF05097 DUF688: Protein of unknown function (DUF688); InterPro: IPR007789 This entry consists of uncharacterised proteins.
Probab=24.78 E-value=35 Score=33.77 Aligned_cols=6 Identities=67% Similarity=1.022 Sum_probs=2.3
Q ss_pred chhhhc
Q 026583 212 DEEEEE 217 (236)
Q Consensus 212 ~~~~~~ 217 (236)
++||+|
T Consensus 226 ~~ee~e 231 (446)
T PF05097_consen 226 DDEESE 231 (446)
T ss_pred cccccc
Confidence 333333
No 175
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.44 E-value=2.6e+02 Score=24.66 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=21.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhhhhh
Q 026583 170 LLLRACGIILPMYVLMRTITAIHNSIRREY 199 (236)
Q Consensus 170 ~~Lra~Gillp~yI~~rai~~iq~~rrrq~ 199 (236)
+.+.++|.++...+--+.++++++||||+.
T Consensus 147 v~~~a~~~ll~y~~~r~~v~~f~~rR~~~~ 176 (184)
T COG3216 147 VPAGAIGGLLFYGLTRYSVTRFRERRRRSL 176 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777766677788999998875543
No 176
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.34 E-value=1.2e+02 Score=26.67 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 026583 139 ALTFTVLLLVKHLFAVLTGNTDDYPFALVTVLLLRACGIILPMYVLMRTIT 189 (236)
Q Consensus 139 a~i~~vlLllrh~l~l~~~g~~d~~f~l~tl~~Lra~Gillp~yI~~rai~ 189 (236)
++.++++++++|-..+ +-..+||+.|.|.=.++|.
T Consensus 45 ~~l~~v~l~~g~~~~l----------------~cn~ig~~yP~y~Sv~aIe 79 (186)
T KOG1725|consen 45 ILLLAVYLLFGSGGPL----------------LCNLIGFLYPAYASVKAIE 79 (186)
T ss_pred HHHHHHHHHhcccHHH----------------HHHHHHHHHHHHHHHHhhh
Confidence 4556666666665443 2356777777777776553
No 177
>PHA03375 hypothetical protein; Provisional
Probab=24.15 E-value=24 Score=36.96 Aligned_cols=28 Identities=25% Similarity=0.719 Sum_probs=20.3
Q ss_pred cccCcccCCCc-cccccccCCCcccccHH
Q 026583 24 CHEEEFESCNS-LEAPCACSGTVKFAHRD 51 (236)
Q Consensus 24 C~~e~~e~~~~-li~PC~C~GSlk~vH~~ 51 (236)
|..++.+.++- ...+|+|.|.+-|+|++
T Consensus 99 CycdeWd~~eyl~~~~~~C~gP~LYvhr~ 127 (844)
T PHA03375 99 CYCDEWDVNEYLAKTACNCRGPLLYIHRS 127 (844)
T ss_pred ccccchhhhhhhhhcccccCCceEEEEec
Confidence 66666443222 37999999999999993
No 178
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=24.14 E-value=86 Score=31.73 Aligned_cols=6 Identities=33% Similarity=0.723 Sum_probs=2.3
Q ss_pred hhhccC
Q 026583 226 EEEQLD 231 (236)
Q Consensus 226 ~~~~~~ 231 (236)
+++..|
T Consensus 547 ~d~~~d 552 (559)
T KOG1334|consen 547 EDDDQD 552 (559)
T ss_pred cccccc
Confidence 333334
No 179
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.04 E-value=39 Score=20.40 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=10.1
Q ss_pred CCcccccccCccc
Q 026583 61 GNTTCEICLQEYG 73 (236)
Q Consensus 61 ~~~~CeiCk~~y~ 73 (236)
....||.|++.|.
T Consensus 13 ~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 13 SAKFCPHCGYDFE 25 (26)
T ss_pred hcCcCCCCCCCCc
Confidence 3568999998774
No 180
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=23.95 E-value=2.1e+02 Score=22.78 Aligned_cols=31 Identities=3% Similarity=-0.089 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 026583 165 ALVTVLLLRACGIILPMYVLMRTITAIHNSI 195 (236)
Q Consensus 165 ~l~tl~~Lra~Gillp~yI~~rai~~iq~~r 195 (236)
.+.+-|..++++++=.++..+|......++|
T Consensus 69 ~i~~g~v~p~m~vvG~iF~~~W~~~l~lg~~ 99 (107)
T PF14017_consen 69 LIAGGFVHPAMFVVGVIFAAVWWYALYLGRR 99 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567788888888888888887766554
No 181
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.70 E-value=27 Score=23.98 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=10.9
Q ss_pred HHHHHHHhh--CCcccccccCccc
Q 026583 52 CIQRWCYEK--GNTTCEICLQEYG 73 (236)
Q Consensus 52 CL~rWl~~k--~~~~CeiCk~~y~ 73 (236)
-+.+++..- ....||+|+.+|.
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~ 31 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLD 31 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCC
Confidence 356666532 2339999999875
No 182
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=23.68 E-value=1.7e+02 Score=21.85 Aligned_cols=12 Identities=17% Similarity=-0.033 Sum_probs=6.3
Q ss_pred hhhhhhhccccc
Q 026583 193 NSIRREYHHVTY 204 (236)
Q Consensus 193 ~~rrrq~~~q~~ 204 (236)
++++||.+++..
T Consensus 50 r~~aReaR~~~a 61 (67)
T COG3114 50 RQRAREARLRAA 61 (67)
T ss_pred HHHHHHHHHHHH
Confidence 344566666543
No 183
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=23.61 E-value=17 Score=33.08 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=12.0
Q ss_pred CCCCCchhhhcccCCCC
Q 026583 207 ETSNSDEEEEEEEDDDD 223 (236)
Q Consensus 207 ~~~~~~~~~~~~~~~~~ 223 (236)
.|-|+++|||||+|---
T Consensus 157 LsAMqEeeeEEe~DAa~ 173 (238)
T PF02084_consen 157 LSAMQEEEEEEEQDAAN 173 (238)
T ss_pred HHHHhhhHHHHHHHHhh
Confidence 36788888888877543
No 184
>cd02865 Heme_Cu_Oxidase_III_2 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=23.33 E-value=4.5e+02 Score=22.08 Aligned_cols=55 Identities=18% Similarity=0.027 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---hCCCCCchHHHHHHHHH----HHhhhhHHHHHHHHH
Q 026583 133 ACCRSLALTFTVLLLVKHLFAVL---TGNTDDYPFALVTVLLL----RACGIILPMYVLMRT 187 (236)
Q Consensus 133 ~~cr~~a~i~~vlLllrh~l~l~---~~g~~d~~f~l~tl~~L----ra~Gillp~yI~~ra 187 (236)
..+-..+++|+++|+........ ......|..+.+++.++ -++|++...+++.|.
T Consensus 86 ~~t~~Lg~~F~~~q~~E~~~~~~~g~~~~~~~~~s~f~~ltg~H~lHV~~G~~~l~~~~~~~ 147 (184)
T cd02865 86 ALAGALALAFLAGQLLAWHALNDAGYGPTSNPAGSFFYLLTGLHGLHVIGGLVALAIVLAGL 147 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888888876665 34455666666666556 345555555554444
No 185
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=23.30 E-value=81 Score=30.14 Aligned_cols=52 Identities=25% Similarity=0.473 Sum_probs=34.8
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
....|.||-+..... .....||.|. ...+..|+..=. .+...|+.|+++|..
T Consensus 248 v~~s~p~~~~~~~~~-d~~~lP~~~~---~~~~l~~~~t~~--~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLT-DSNFLPCPCG---FRLCLFCHKTIS--DGDGRCPGCRKPYER 299 (327)
T ss_pred cCCCCCCCCCccccc-cccccccccc---ccchhhhhhccc--ccCCCCCccCCcccc
Confidence 458999998766432 2357899988 334444444333 357899999988863
No 186
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=23.14 E-value=82 Score=27.55 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHH-HHHHhCCCCCchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 026583 138 LALTFTVLLLVKHL-FAVLTGNTDDYPFALVTVLLLRACGIILPMYVLMRTITAIHNSI 195 (236)
Q Consensus 138 ~a~i~~vlLllrh~-l~l~~~g~~d~~f~l~tl~~Lra~Gillp~yI~~rai~~iq~~r 195 (236)
-+++..+.++++-. +|+...|..- +..++-|+.|+|+-+.+.+..+.|+-++-
T Consensus 56 G~ls~l~yl~lG~~GlPVFagg~gG-----i~~~~GPTgGyL~gfi~aa~l~G~l~~k~ 109 (184)
T COG1268 56 GALSVLLYLLLGAIGLPVFAGGRGG-----IAVLFGPTGGYLIGFIIAAFLIGLLAEKI 109 (184)
T ss_pred HHHHHHHHHHHHHhCCCeecCCCCc-----eeeeecCchhHHHHHHHHHHHHHHHHHhh
Confidence 34555666777776 7777777554 23457899999999999999999998664
No 187
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.02 E-value=33 Score=34.19 Aligned_cols=44 Identities=30% Similarity=0.802 Sum_probs=32.5
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+....|+||..+- .. -+.||. |..|++.|... +..||+|+....
T Consensus 477 ~~~~~~~~~~~~~-~~---~~~~~~--------~~~~l~~~~~~--~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SA---RITPCS--------HALCLRKWLYV--QEVCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH-Hh---cccccc--------chhHHHhhhhh--ccccCCCchhhh
Confidence 3458899998776 21 356666 99999999954 458999987654
No 188
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=22.99 E-value=1.5e+02 Score=25.58 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=17.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhh
Q 026583 173 RACGIILPMYVLMRTITAIHNSI 195 (236)
Q Consensus 173 ra~Gillp~yI~~rai~~iq~~r 195 (236)
-.+||++++.|+...|.|.-+|.
T Consensus 34 ILiaIvVliiiiivli~lcssRK 56 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRK 56 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34566788888888888888765
No 189
>PRK12860 transcriptional activator FlhC; Provisional
Probab=22.92 E-value=40 Score=29.72 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=20.5
Q ss_pred ccccccCCCcccccHHHHHHHHHhhCCccccccc
Q 026583 36 EAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICL 69 (236)
Q Consensus 36 i~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk 69 (236)
..||.|.|+--.+|.. ....+..|++|+
T Consensus 134 l~~C~~Cgg~fv~~~~------e~~~~f~CplC~ 161 (189)
T PRK12860 134 LARCCRCGGKFVTHAH------DLRHNFVCGLCQ 161 (189)
T ss_pred eccCCCCCCCeecccc------ccCCCCcCCCCC
Confidence 7999966654445655 445689999999
No 190
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=22.83 E-value=84 Score=24.19 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=21.3
Q ss_pred cCCCcccccHHHHHHHHHhhCCcccccccCcccCCc
Q 026583 41 CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGY 76 (236)
Q Consensus 41 C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~y 76 (236)
|+-.+++.+.-=+--|+-.|| +|.-|++++.+.|
T Consensus 39 C~~~L~~~~lIPi~S~l~lrG--rCr~C~~~I~~~y 72 (92)
T PF06750_consen 39 CGHPLSWWDLIPILSYLLLRG--RCRYCGAPIPPRY 72 (92)
T ss_pred CCCcCcccccchHHHHHHhCC--CCcccCCCCChHH
Confidence 555555655555667775555 6777777765444
No 191
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.22 E-value=42 Score=33.21 Aligned_cols=12 Identities=75% Similarity=1.285 Sum_probs=4.9
Q ss_pred CCCCchhhhccC
Q 026583 220 DDDDDDEEEQLD 231 (236)
Q Consensus 220 ~~~~~~~~~~~~ 231 (236)
|||+||+||.+|
T Consensus 278 ddd~dDdeeN~d 289 (514)
T KOG3130|consen 278 DDDDDDDEENID 289 (514)
T ss_pred cccccchhhccc
Confidence 333334444444
No 192
>PF15345 TMEM51: Transmembrane protein 51
Probab=22.10 E-value=94 Score=28.36 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=14.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhhhhh
Q 026583 171 LLRACGIILPMYVLMRTITAIHNSIRREY 199 (236)
Q Consensus 171 ~Lra~Gillp~yI~~rai~~iq~~rrrq~ 199 (236)
+|--+|++|-++-++-.|| ++|||||.
T Consensus 63 VLVG~Gv~LLLLSICL~IR--~KRr~rq~ 89 (233)
T PF15345_consen 63 VLVGSGVALLLLSICLSIR--DKRRRRQG 89 (233)
T ss_pred ehhhHHHHHHHHHHHHHHH--HHHHHhhc
Confidence 3334466666655555554 55554443
No 193
>COG3924 Predicted membrane protein [Function unknown]
Probab=21.73 E-value=2.8e+02 Score=21.21 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=15.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhCCCCCch
Q 026583 128 AGRTAACCRSLALTFTVLLLVKHLFAVLTGNTDDYP 163 (236)
Q Consensus 128 ~~~~~~~cr~~a~i~~vlLllrh~l~l~~~g~~d~~ 163 (236)
+++-|.|.-.+.+.-++-.++---++=.+-|.-+.+
T Consensus 8 A~KEA~WAlgLtllYl~gW~v~AYlp~~t~G~~gfP 43 (80)
T COG3924 8 AHKEARWALGLTLLYLAGWLVAAYLPGNTPGFTGFP 43 (80)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCh
Confidence 344566764444444444333333333333443333
No 194
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=21.72 E-value=1.7e+02 Score=25.09 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=8.1
Q ss_pred CCcccccccCc
Q 026583 61 GNTTCEICLQE 71 (236)
Q Consensus 61 ~~~~CeiCk~~ 71 (236)
....||+|.-+
T Consensus 43 ~~LRCp~CQNq 53 (153)
T COG3088 43 EELRCPQCQNQ 53 (153)
T ss_pred HhcCCCcCCCC
Confidence 46789999844
No 195
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=21.53 E-value=25 Score=23.21 Aligned_cols=44 Identities=20% Similarity=0.601 Sum_probs=27.0
Q ss_pred eeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHHh----hCCccccccc
Q 026583 20 HCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE----KGNTTCEICL 69 (236)
Q Consensus 20 ~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~----k~~~~CeiCk 69 (236)
.|.||.....++ ...-|. |. .++|..|+.-=... ++...|+.|.
T Consensus 1 ~C~vC~~~~~~~---~~i~C~~C~---~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDG---DMIQCDSCN---RWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTS---SEEEBSTTS---CEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCC---CeEEcCCCC---hhhCcccCCCChhhccCCCCcEECcCCc
Confidence 478887744332 233343 55 99999998654432 2367888775
No 196
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=21.44 E-value=3.2e+02 Score=27.20 Aligned_cols=13 Identities=8% Similarity=-0.192 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhCC
Q 026583 146 LLVKHLFAVLTGN 158 (236)
Q Consensus 146 Lllrh~l~l~~~g 158 (236)
-+.+-+.+....+
T Consensus 414 ~s~~~~~~~~~~~ 426 (495)
T KOG2533|consen 414 GSAGAISGQLFRS 426 (495)
T ss_pred hHHHHhhhhhccc
Confidence 3444444444444
No 197
>PHA03171 UL37 tegument protein; Provisional
Probab=21.40 E-value=77 Score=31.41 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHhhh---hhhhcc
Q 026583 178 ILPMYVLMRTITAIHNSI---RREYHH 201 (236)
Q Consensus 178 llp~yI~~rai~~iq~~r---rrq~~~ 201 (236)
|+|-+=--||...-|++| ||||.+
T Consensus 34 lppw~~~~~~~~~~~~~r~rl~rq~gv 60 (499)
T PHA03171 34 LPPWLRKEKACALRQQRRHRLQRQHGV 60 (499)
T ss_pred CChhHhhhHHHHHHHHHHHHHHHhcCc
Confidence 356655556665555444 456544
No 198
>PRK12722 transcriptional activator FlhC; Provisional
Probab=21.29 E-value=46 Score=29.30 Aligned_cols=29 Identities=24% Similarity=0.595 Sum_probs=20.9
Q ss_pred ccccccCCCcccccHHHHHHHHHhhCCcccccccC
Q 026583 36 EAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (236)
Q Consensus 36 i~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~ 70 (236)
..||.|.|+--.+|.. ..+.+..|++|+-
T Consensus 134 l~~C~~Cgg~fv~~~~------e~~~~f~CplC~~ 162 (187)
T PRK12722 134 LSSCNCCGGHFVTHAH------DPVGSFVCGLCQP 162 (187)
T ss_pred eccCCCCCCCeecccc------ccCCCCcCCCCCC
Confidence 7899966654445665 3456889999994
No 199
>PF10161 DDDD: Putative mitochondrial precursor protein; InterPro: IPR018782 This entry represents a family of small conserved proteins found from nematodes to humans. The C-terminal region is rich in asparagine. These proteins have been putatively designated as mitochondrial precursor proteins but this has not been confirmed.
Probab=21.00 E-value=41 Score=25.80 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHH
Q 026583 177 IILPMYVLMRTIT 189 (236)
Q Consensus 177 illp~yI~~rai~ 189 (236)
..+|.+.++-.|+
T Consensus 45 vvip~l~~Ga~is 57 (79)
T PF10161_consen 45 VVIPGLYLGATIS 57 (79)
T ss_pred eeccHHHHHHHHH
Confidence 3456655554443
No 200
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=20.99 E-value=50 Score=35.14 Aligned_cols=6 Identities=33% Similarity=1.159 Sum_probs=2.2
Q ss_pred CchHHH
Q 026583 161 DYPFAL 166 (236)
Q Consensus 161 d~~f~l 166 (236)
+|||++
T Consensus 775 E~P~~V 780 (960)
T KOG1189|consen 775 EWPFFV 780 (960)
T ss_pred cCCceE
Confidence 333333
No 201
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=20.63 E-value=3.6e+02 Score=20.64 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026583 136 RSLALTFTVLLLVKHLFAV 154 (236)
Q Consensus 136 r~~a~i~~vlLllrh~l~l 154 (236)
|.+|++++++=-+--+.++
T Consensus 3 R~iAlliLvIPg~~a~yGi 21 (77)
T PF11118_consen 3 RFIALLILVIPGILAAYGI 21 (77)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666554333334444
No 202
>PHA03096 p28-like protein; Provisional
Probab=20.61 E-value=66 Score=29.91 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=31.2
Q ss_pred CeeeEcccCcccC---C--CccccccccCCCcccccHHHHHHHHHhhC-CcccccccC
Q 026583 19 SHCRICHEEEFES---C--NSLEAPCACSGTVKFAHRDCIQRWCYEKG-NTTCEICLQ 70 (236)
Q Consensus 19 ~~CRIC~~e~~e~---~--~~li~PC~C~GSlk~vH~~CL~rWl~~k~-~~~CeiCk~ 70 (236)
+.|-||++...+. + --+..-|. |-+=..|+..|..++. +.+|+.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~-----h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIK-----HEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCC-----cHHHHHHHHHHHHhhhhcccCccccc
Confidence 7899999876421 1 11234444 7788899999998763 456666663
No 203
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.59 E-value=2.1e+02 Score=22.18 Aligned_cols=8 Identities=13% Similarity=-0.130 Sum_probs=3.5
Q ss_pred HHHHhhhh
Q 026583 189 TAIHNSIR 196 (236)
Q Consensus 189 ~~iq~~rr 196 (236)
+|.++||+
T Consensus 49 ~~~~~rr~ 56 (108)
T PF07219_consen 49 RWRRRRRR 56 (108)
T ss_pred HHHHHHHH
Confidence 34444443
No 204
>TIGR03382 GC_trans_RRR Myxococcales GC_trans_RRR domain. The domain described here is small (about 30 amino acids), hydrophobic, only moderately conserved, and similar to numerous other transmembrane helix-containing sequence regions from convergent evolution. This domain is found, once per protein but in many proteins per genome in several bacteria of the order Myxococcales. It begins with a signature Gly-Cys motif. Its other features, including a hydrophobic transmembrane helix, Arg-rich cluster, and location at the protein C-terminus, resemble the PEP-CTERM proposed protein targeting domain.
Probab=20.59 E-value=1.1e+02 Score=18.75 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 026583 178 ILPMYVLMRTITAIHNSI 195 (236)
Q Consensus 178 llp~yI~~rai~~iq~~r 195 (236)
++|+..+ +..++.+||
T Consensus 11 ~~~l~~l--~l~~l~rRR 26 (27)
T TIGR03382 11 LLALALL--ALAALLRRR 26 (27)
T ss_pred HHHHHHH--HHHHHHhcc
Confidence 3454444 555566654
No 205
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.51 E-value=4.5e+02 Score=21.17 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=17.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhh
Q 026583 171 LLRACGIILPMYVLMRTITAIHNS 194 (236)
Q Consensus 171 ~Lra~Gillp~yI~~rai~~iq~~ 194 (236)
++.++=|+|-+|-+..+..+..++
T Consensus 81 ilG~L~fIPG~Y~~~i~y~a~rg~ 104 (115)
T PF05915_consen 81 ILGILCFIPGFYHTRIAYYAWRGY 104 (115)
T ss_pred HHHHHHHhccHHHHHHHHHHHcCC
Confidence 667777778899888888775544
No 206
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=20.43 E-value=3e+02 Score=21.91 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 026583 138 LALTFTVLLLVKHLFAVLTGNT 159 (236)
Q Consensus 138 ~a~i~~vlLllrh~l~l~~~g~ 159 (236)
+|++=+++++++-.++-.+...
T Consensus 74 ~Y~lPll~li~g~~l~~~~~~~ 95 (135)
T PF04246_consen 74 VYLLPLLALIAGAVLGSYLGGS 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566665555443333
No 207
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=20.33 E-value=38 Score=31.58 Aligned_cols=13 Identities=15% Similarity=0.605 Sum_probs=9.7
Q ss_pred CcccccccCcccC
Q 026583 62 NTTCEICLQEYGP 74 (236)
Q Consensus 62 ~~~CeiCk~~y~~ 74 (236)
..+||+=+.+|..
T Consensus 40 R~SCPLANSrYAT 52 (303)
T KOG3064|consen 40 RSSCPLANSRYAT 52 (303)
T ss_pred cccCcCcccccee
Confidence 4588888888853
No 208
>cd00386 Heme_Cu_Oxidase_III_like Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex
Probab=20.17 E-value=4e+02 Score=22.14 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH----HHhhhhHHHHHHHHHH
Q 026583 134 CCRSLALTFTVLLLVKHLFAVLTGNTDDYPFALVTVLLL----RACGIILPMYVLMRTI 188 (236)
Q Consensus 134 ~cr~~a~i~~vlLllrh~l~l~~~g~~d~~f~l~tl~~L----ra~Gillp~yI~~rai 188 (236)
.+-.++++|+++|+..-...........|..+.+.+.++ -++|++...+++.|+.
T Consensus 89 ~t~~lg~~Fl~~q~~E~~~~~~~~~~~~~~s~f~~ltglH~~HV~~G~i~l~~~~~~~~ 147 (183)
T cd00386 89 LTILLGLAFLGLQAYEYSHLIFTISDSVFGSTFFLLTGFHGLHVIIGLIFLLVVLIRLR 147 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466677777777766555544455556566666555 4455555555554443
No 209
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=20.17 E-value=49 Score=33.76 Aligned_cols=7 Identities=29% Similarity=0.467 Sum_probs=3.6
Q ss_pred hhhhHHH
Q 026583 175 CGIILPM 181 (236)
Q Consensus 175 ~Gillp~ 181 (236)
+|=|+|-
T Consensus 110 mgplPP~ 116 (641)
T KOG0772|consen 110 MGPLPPK 116 (641)
T ss_pred cCCCCch
Confidence 3445665
No 210
>PHA03237 envelope glycoprotein M; Provisional
Probab=20.16 E-value=7.9e+02 Score=24.38 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=13.9
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhh
Q 026583 174 ACGIILPMYVLMRTITAIHNSIR 196 (236)
Q Consensus 174 a~Gillp~yI~~rai~~iq~~rr 196 (236)
.+-++-.+.+++|.+|.....||
T Consensus 334 viail~l~m~vvRlvRa~~yHr~ 356 (424)
T PHA03237 334 IFAVIIVIMLVVRLVRACLYHRR 356 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556677888887764433
No 211
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.09 E-value=81 Score=29.74 Aligned_cols=51 Identities=16% Similarity=0.432 Sum_probs=37.4
Q ss_pred eeeEcccCc--ccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc-CCc
Q 026583 20 HCRICHEEE--FESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG-PGY 76 (236)
Q Consensus 20 ~CRIC~~e~--~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~-~~y 76 (236)
.|.+|.... ..+-..+++||. |-.-.+|+.+-+. .|...||-|..... .+|
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~-----H~lCEsCvd~iF~-~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECG-----HRLCESCVDRIFS-LGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeecccc-----chHHHHHHHHHHh-cCCCCCCcccchhhhccc
Confidence 588887554 233444689998 7788899998774 68999999998763 344
Done!