Query 026583
Match_columns 236
No_of_seqs 252 out of 883
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 17:02:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 1.9E-19 6.5E-24 127.9 4.6 57 15-74 3-59 (60)
2 2d8s_A Cellular modulator of i 99.7 1.5E-18 5E-23 129.7 6.0 68 13-81 10-77 (80)
3 2l0b_A E3 ubiquitin-protein li 98.7 1.1E-08 3.7E-13 76.5 4.3 54 14-74 36-89 (91)
4 2kiz_A E3 ubiquitin-protein li 98.7 1.5E-08 5.1E-13 71.2 4.6 56 14-76 10-65 (69)
5 2ect_A Ring finger protein 126 98.7 1.6E-08 5.4E-13 72.7 3.9 56 14-76 11-66 (78)
6 1iym_A EL5; ring-H2 finger, ub 98.6 1.1E-08 3.9E-13 68.6 2.8 51 16-73 3-54 (55)
7 1x4j_A Ring finger protein 38; 98.6 1.4E-08 4.7E-13 72.7 2.8 54 14-74 19-72 (75)
8 2ep4_A Ring finger protein 24; 98.6 5E-08 1.7E-12 69.3 5.6 52 16-74 13-64 (74)
9 1v87_A Deltex protein 2; ring- 98.6 4.6E-08 1.6E-12 75.0 4.8 57 17-78 24-98 (114)
10 2ecm_A Ring finger and CHY zin 98.5 7.1E-08 2.4E-12 64.5 3.4 51 16-73 3-54 (55)
11 2ecl_A Ring-box protein 2; RNF 98.4 2.7E-07 9.3E-12 67.6 4.0 51 16-73 13-75 (81)
12 2ea6_A Ring finger protein 4; 98.3 3.3E-07 1.1E-11 63.5 3.4 52 15-73 12-67 (69)
13 2ct2_A Tripartite motif protei 98.3 6.2E-07 2.1E-11 65.1 5.0 54 16-74 13-68 (88)
14 3ng2_A RNF4, snurf, ring finge 98.3 2.5E-07 8.7E-12 64.7 2.0 53 14-73 6-62 (71)
15 2d8t_A Dactylidin, ring finger 98.3 2.8E-07 9.6E-12 65.3 2.2 51 16-76 13-63 (71)
16 1chc_A Equine herpes virus-1 r 98.3 2.1E-07 7.3E-12 64.9 1.4 50 16-74 3-52 (68)
17 2xeu_A Ring finger protein 4; 98.2 5.1E-07 1.7E-11 61.7 2.5 50 17-73 2-55 (64)
18 3dpl_R Ring-box protein 1; ubi 98.2 8.9E-07 3.1E-11 68.8 3.9 50 17-73 36-100 (106)
19 2yur_A Retinoblastoma-binding 98.2 1.6E-06 5.5E-11 62.0 4.3 48 17-72 14-62 (74)
20 2ecy_A TNF receptor-associated 98.1 1.5E-06 5.2E-11 60.5 3.8 50 15-73 12-61 (66)
21 2ysl_A Tripartite motif-contai 98.1 1.2E-06 4E-11 61.7 2.9 51 15-73 17-68 (73)
22 2ecn_A Ring finger protein 141 98.1 7.1E-07 2.4E-11 62.6 1.6 47 16-73 13-59 (70)
23 2ct0_A Non-SMC element 1 homol 98.1 3E-06 1E-10 62.3 4.8 51 16-73 13-63 (74)
24 2csy_A Zinc finger protein 183 98.1 3.5E-06 1.2E-10 60.9 4.9 48 16-73 13-60 (81)
25 2ecw_A Tripartite motif-contai 98.0 4.7E-06 1.6E-10 59.6 4.8 51 16-74 17-71 (85)
26 2ecv_A Tripartite motif-contai 98.0 6.5E-06 2.2E-10 58.8 5.5 51 16-74 17-71 (85)
27 3ztg_A E3 ubiquitin-protein li 98.0 4.5E-06 1.5E-10 61.4 3.8 50 15-72 10-60 (92)
28 2djb_A Polycomb group ring fin 98.0 7.1E-06 2.4E-10 58.1 4.3 50 16-74 13-62 (72)
29 2ecj_A Tripartite motif-contai 98.0 5.4E-06 1.8E-10 55.6 3.5 45 16-68 13-58 (58)
30 2ysj_A Tripartite motif-contai 97.9 6.9E-06 2.4E-10 56.5 3.9 46 15-68 17-63 (63)
31 1t1h_A Gspef-atpub14, armadill 97.9 7.6E-06 2.6E-10 58.4 3.7 50 16-74 6-55 (78)
32 4a0k_B E3 ubiquitin-protein li 97.9 1.8E-06 6E-11 68.6 -0.0 50 17-73 47-111 (117)
33 2egp_A Tripartite motif-contai 97.9 3.1E-06 1.1E-10 60.3 1.0 52 15-74 9-65 (79)
34 3lrq_A E3 ubiquitin-protein li 97.8 7.6E-06 2.6E-10 61.8 2.9 49 17-74 21-70 (100)
35 1g25_A CDK-activating kinase a 97.8 9.5E-06 3.3E-10 56.2 3.1 50 18-73 3-54 (65)
36 4ayc_A E3 ubiquitin-protein li 97.8 5.6E-06 1.9E-10 65.9 2.2 45 19-73 54-98 (138)
37 4ap4_A E3 ubiquitin ligase RNF 97.8 7.1E-06 2.4E-10 63.1 2.3 53 15-74 4-60 (133)
38 3fl2_A E3 ubiquitin-protein li 97.8 1.5E-05 5.2E-10 62.0 3.7 48 18-74 52-99 (124)
39 1e4u_A Transcriptional repress 97.8 2.4E-05 8.4E-10 57.4 4.5 54 15-73 8-61 (78)
40 2y43_A E3 ubiquitin-protein li 97.7 1.4E-05 4.7E-10 59.8 2.8 47 18-74 22-69 (99)
41 1jm7_A BRCA1, breast cancer ty 97.7 2.3E-05 7.9E-10 59.2 4.0 50 18-75 21-71 (112)
42 3k1l_B Fancl; UBC, ring, RWD, 97.6 2.2E-05 7.4E-10 73.3 3.0 60 14-76 304-375 (381)
43 3hct_A TNF receptor-associated 97.6 2.3E-05 7.9E-10 60.6 2.7 52 14-74 14-65 (118)
44 2ckl_B Ubiquitin ligase protei 97.6 2.6E-05 9E-10 63.5 2.8 46 19-73 55-101 (165)
45 1z6u_A NP95-like ring finger p 97.5 4.5E-05 1.5E-09 62.1 3.4 49 18-75 78-126 (150)
46 2ckl_A Polycomb group ring fin 97.5 3.5E-05 1.2E-09 58.5 2.3 48 17-74 14-62 (108)
47 4ap4_A E3 ubiquitin ligase RNF 97.5 4.1E-05 1.4E-09 58.8 2.1 53 15-74 69-125 (133)
48 1rmd_A RAG1; V(D)J recombinati 97.4 7.8E-05 2.7E-09 57.1 3.4 48 18-74 23-70 (116)
49 3l11_A E3 ubiquitin-protein li 97.2 4.1E-05 1.4E-09 58.6 -0.2 48 17-73 14-61 (115)
50 2y1n_A E3 ubiquitin-protein li 97.2 0.00019 6.5E-09 67.4 3.9 48 18-74 332-379 (389)
51 1jm7_B BARD1, BRCA1-associated 96.9 0.00019 6.4E-09 55.4 0.4 45 17-73 21-66 (117)
52 3hcs_A TNF receptor-associated 96.8 0.00047 1.6E-08 56.1 2.3 51 15-74 15-65 (170)
53 4ic3_A E3 ubiquitin-protein li 96.8 0.00029 9.8E-09 50.4 0.8 43 18-74 24-67 (74)
54 2vje_B MDM4 protein; proto-onc 96.7 0.00059 2E-08 47.5 2.1 50 16-73 5-55 (63)
55 2vje_A E3 ubiquitin-protein li 96.7 0.00074 2.5E-08 47.2 2.1 47 17-73 7-56 (64)
56 2c2l_A CHIP, carboxy terminus 96.6 0.0013 4.5E-08 56.2 3.6 48 17-73 207-254 (281)
57 3nw0_A Non-structural maintena 96.6 0.0013 4.6E-08 57.5 3.5 50 16-73 178-228 (238)
58 1bor_A Transcription factor PM 96.5 0.00077 2.6E-08 45.6 1.2 45 16-73 4-48 (56)
59 2kr4_A Ubiquitin conjugation f 96.5 0.0026 8.8E-08 46.8 4.1 49 16-74 12-60 (85)
60 3knv_A TNF receptor-associated 96.5 0.00049 1.7E-08 55.4 0.1 48 16-72 29-76 (141)
61 2kre_A Ubiquitin conjugation f 96.3 0.0024 8.2E-08 48.6 3.3 48 17-74 28-75 (100)
62 2yu4_A E3 SUMO-protein ligase 96.2 0.0042 1.4E-07 46.3 4.0 49 15-71 4-59 (94)
63 1wim_A KIAA0161 protein; ring 96.2 0.0025 8.5E-08 47.1 2.7 50 16-72 3-62 (94)
64 2ecg_A Baculoviral IAP repeat- 96.1 0.0029 9.8E-08 45.0 2.8 42 19-74 26-68 (75)
65 2ea5_A Cell growth regulator w 96.1 0.0059 2E-07 43.2 4.2 48 14-75 11-59 (68)
66 2f42_A STIP1 homology and U-bo 95.9 0.0041 1.4E-07 52.5 2.9 49 17-74 105-153 (179)
67 1wgm_A Ubiquitin conjugation f 95.0 0.015 5.1E-07 43.9 3.1 49 17-74 21-69 (98)
68 3t6p_A Baculoviral IAP repeat- 94.5 0.0063 2.2E-07 55.9 -0.2 44 17-74 294-338 (345)
69 2yho_A E3 ubiquitin-protein li 94.3 0.012 4E-07 42.7 1.0 44 18-75 18-62 (79)
70 3htk_C E3 SUMO-protein ligase 92.6 0.04 1.4E-06 49.4 1.7 49 17-73 180-231 (267)
71 2bay_A PRE-mRNA splicing facto 92.3 0.071 2.4E-06 36.9 2.3 45 19-73 4-49 (61)
72 1weo_A Cellulose synthase, cat 91.8 0.36 1.2E-05 36.8 5.9 54 17-74 15-70 (93)
73 2lri_C Autoimmune regulator; Z 91.4 0.067 2.3E-06 38.0 1.4 49 14-71 8-59 (66)
74 2ku3_A Bromodomain-containing 85.5 0.16 5.3E-06 36.6 -0.0 55 12-70 10-65 (71)
75 1wil_A KIAA1045 protein; ring 82.2 1.1 3.6E-05 33.9 3.3 49 15-70 12-75 (89)
76 3o36_A Transcription intermedi 78.4 0.23 7.8E-06 41.0 -1.6 50 16-73 2-53 (184)
77 2l43_A N-teminal domain from h 78.0 0.35 1.2E-05 36.0 -0.5 54 15-72 22-76 (88)
78 1wev_A Riken cDNA 1110020M19; 77.9 0.18 6.1E-06 37.5 -2.2 52 18-73 16-74 (88)
79 2lbm_A Transcriptional regulat 76.4 1.4 4.6E-05 35.9 2.5 46 15-69 60-115 (142)
80 1jb0_I Photosystem 1 reaction 75.3 3.3 0.00011 26.6 3.6 33 161-193 4-36 (38)
81 2vpb_A Hpygo1, pygopus homolog 75.1 1.2 3.9E-05 31.4 1.5 36 13-53 3-40 (65)
82 2ysm_A Myeloid/lymphoid or mix 71.6 0.6 2E-05 35.4 -0.7 50 13-68 2-54 (111)
83 1wep_A PHF8; structural genomi 69.9 5 0.00017 28.7 4.0 56 16-76 10-68 (79)
84 1f62_A Transcription factor WS 69.5 1 3.4E-05 29.6 0.1 45 20-70 2-49 (51)
85 3u5n_A E3 ubiquitin-protein li 69.4 0.48 1.6E-05 39.8 -1.9 50 16-73 5-56 (207)
86 1weu_A Inhibitor of growth fam 67.4 1.4 4.6E-05 33.3 0.5 50 15-72 33-86 (91)
87 2yt5_A Metal-response element- 66.9 0.48 1.6E-05 32.7 -2.0 53 15-71 3-61 (66)
88 3iab_B Ribonucleases P/MRP pro 66.1 1.1 3.8E-05 36.5 -0.3 29 202-230 98-126 (140)
89 2l5u_A Chromodomain-helicase-D 64.1 1.8 6.1E-05 29.8 0.5 49 15-71 8-58 (61)
90 2yql_A PHD finger protein 21A; 63.9 0.41 1.4E-05 32.3 -2.8 49 14-70 5-55 (56)
91 1wen_A Inhibitor of growth fam 63.2 1.1 3.6E-05 32.1 -0.8 53 11-71 9-65 (71)
92 2ko5_A Ring finger protein Z; 63.0 3.9 0.00013 31.4 2.2 47 19-76 29-75 (99)
93 2ri7_A Nucleosome-remodeling f 62.4 1.4 4.6E-05 35.7 -0.4 53 15-72 5-60 (174)
94 2k16_A Transcription initiatio 60.7 1.2 4.2E-05 31.4 -0.9 51 17-72 17-69 (75)
95 4gne_A Histone-lysine N-methyl 58.9 2 7E-05 33.1 0.1 50 12-69 9-60 (107)
96 1mm2_A MI2-beta; PHD, zinc fin 58.0 1.1 3.7E-05 30.9 -1.5 47 16-71 7-56 (61)
97 3ql9_A Transcriptional regulat 57.5 8.9 0.00031 30.5 3.6 48 14-69 53-109 (129)
98 2kwj_A Zinc finger protein DPF 57.0 2.5 8.6E-05 32.4 0.3 36 19-57 2-42 (114)
99 2e6r_A Jumonji/ARID domain-con 55.9 0.84 2.9E-05 34.1 -2.6 49 17-71 15-66 (92)
100 1xwh_A Autoimmune regulator; P 55.1 1 3.5E-05 31.4 -2.1 49 15-71 5-55 (66)
101 3vk6_A E3 ubiquitin-protein li 50.3 11 0.00039 28.9 3.0 32 36-73 17-48 (101)
102 2puy_A PHD finger protein 21A; 50.1 1.2 4.2E-05 30.3 -2.3 47 17-71 4-52 (60)
103 2jwa_A Receptor tyrosine-prote 49.8 24 0.00081 23.2 4.1 24 171-195 15-38 (44)
104 2byk_A Chrac-16; nucleosome sl 47.7 3.9 0.00013 33.0 0.0 8 221-228 124-131 (140)
105 1we9_A PHD finger family prote 46.9 2.7 9.2E-05 28.7 -0.9 54 15-72 3-59 (64)
106 3v43_A Histone acetyltransfera 46.4 9.6 0.00033 28.9 2.1 35 17-55 4-43 (112)
107 1wem_A Death associated transc 44.4 7.7 0.00026 27.3 1.2 51 17-73 15-72 (76)
108 2xb1_A Pygopus homolog 2, B-ce 43.8 7.2 0.00025 29.6 1.0 52 18-73 3-63 (105)
109 3cx5_F Cytochrome B-C1 complex 43.6 4.5 0.00016 33.1 -0.2 18 216-233 60-77 (146)
110 1fp0_A KAP-1 corepressor; PHD 43.3 3.3 0.00011 31.0 -1.0 49 15-71 22-72 (88)
111 2vnf_A ING 4, P29ING4, inhibit 43.1 1.3 4.3E-05 30.5 -3.1 48 15-70 7-58 (60)
112 2l2t_A Receptor tyrosine-prote 42.3 33 0.0011 22.5 3.9 25 171-195 13-37 (44)
113 3asl_A E3 ubiquitin-protein li 39.5 2.8 9.5E-05 29.7 -1.9 45 20-70 20-68 (70)
114 1x4i_A Inhibitor of growth pro 38.4 5 0.00017 28.4 -0.7 52 15-72 3-56 (70)
115 4fp9_B Mterf domain-containing 36.6 7.4 0.00025 35.3 0.0 16 170-185 255-270 (335)
116 2ro1_A Transcription intermedi 36.5 4.9 0.00017 33.4 -1.1 47 18-72 2-50 (189)
117 2g6q_A Inhibitor of growth pro 34.1 2.2 7.5E-05 29.6 -3.1 47 16-70 9-59 (62)
118 3shb_A E3 ubiquitin-protein li 33.7 2.8 9.7E-05 30.4 -2.6 25 46-70 49-76 (77)
119 2kgg_A Histone demethylase jar 33.1 7.5 0.00026 25.6 -0.4 46 20-69 4-52 (52)
120 2jmi_A Protein YNG1, ING1 homo 33.0 3.9 0.00014 30.6 -2.0 47 16-70 24-75 (90)
121 2zd7_A VPS75, vacuolar protein 30.5 29 0.00098 30.4 2.8 10 183-192 208-217 (264)
122 2lv9_A Histone-lysine N-methyl 29.4 11 0.00039 28.0 -0.0 47 17-69 27-74 (98)
123 2ks1_B Epidermal growth factor 29.4 45 0.0015 21.7 2.9 19 176-194 19-37 (44)
124 2jny_A Uncharacterized BCR; st 27.1 13 0.00044 26.4 -0.1 31 35-75 11-41 (67)
125 2odx_A Cytochrome C oxidase po 26.2 7.6 0.00026 28.5 -1.4 20 61-80 55-74 (80)
126 2ayu_A Nucleosome assembly pro 25.2 15 0.00051 34.5 0.0 9 184-192 353-361 (417)
127 3c6w_A P28ING5, inhibitor of g 24.9 4.5 0.00015 27.7 -2.8 47 16-70 7-57 (59)
128 2pk7_A Uncharacterized protein 22.7 16 0.00054 26.0 -0.3 31 35-75 9-39 (69)
129 3ask_A E3 ubiquitin-protein li 22.0 9.6 0.00033 33.1 -1.9 46 20-70 176-224 (226)
130 2da7_A Zinc finger homeobox pr 22.0 42 0.0015 24.1 1.9 16 189-204 51-66 (71)
131 1znf_A 31ST zinc finger from X 21.8 32 0.0011 17.3 0.9 11 63-73 2-12 (27)
132 2jr6_A UPF0434 protein NMA0874 21.5 21 0.00073 25.2 0.2 31 35-75 9-39 (68)
133 2js4_A UPF0434 protein BB2007; 21.2 18 0.00061 25.8 -0.3 31 35-75 9-39 (70)
134 3i2d_A E3 SUMO-protein ligase 20.9 76 0.0026 29.4 3.8 38 33-73 257-299 (371)
135 1ard_A Yeast transcription fac 20.0 35 0.0012 17.3 0.9 11 63-73 3-13 (29)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.77 E-value=1.9e-19 Score=127.93 Aligned_cols=57 Identities=35% Similarity=0.731 Sum_probs=50.7
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
.++...||||+++.+ ++++.||+|+||++|||+.||++|++++++.+||+|+++|++
T Consensus 3 ~~~~~~CrIC~~~~~---~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECS---CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCCC---CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 356789999998753 348999999999999999999999999999999999999974
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=129.73 Aligned_cols=68 Identities=31% Similarity=0.760 Sum_probs=57.8
Q ss_pred CCCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCCccCCCC
Q 026583 13 SNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGYTAPSK 81 (236)
Q Consensus 13 s~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~y~~~p~ 81 (236)
..+.+...|+||+++.+++ ++++.||+|+|++|+||+.||++|+..+++.+||+|++.|.+....+|+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~-~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDE-SPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSS-SCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCCCCeEcCccccCC-CeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCC
Confidence 3455678999999887654 4589999999999999999999999999889999999999876665543
No 3
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.70 E-value=1.1e-08 Score=76.47 Aligned_cols=54 Identities=26% Similarity=0.637 Sum_probs=43.4
Q ss_pred CCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
..+....|.||++...++......||. |.+|..|+.+|++ .+.+||+|++.+.+
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQ--KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHT--TTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHH--cCCcCcCcCccCCC
Confidence 445778999999887665555678876 9999999999995 45699999988753
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.69 E-value=1.5e-08 Score=71.19 Aligned_cols=56 Identities=23% Similarity=0.582 Sum_probs=44.2
Q ss_pred CCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCCc
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGY 76 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~y 76 (236)
..+....|.||++....+......||+ |.+|..|+.+|+..+ .+||+|++.+....
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITN--KKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcC--CCCcCcCccccCcC
Confidence 345678999999887655555678876 999999999999764 47999999887443
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.65 E-value=1.6e-08 Score=72.67 Aligned_cols=56 Identities=20% Similarity=0.520 Sum_probs=43.6
Q ss_pred CCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCCc
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGY 76 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~y 76 (236)
..+....|.||++...........||. |.+|..||.+|++ .+.+||+|++.+...-
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLE--QHDSCPVCRKSLTGQN 66 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHT--TTCSCTTTCCCCCCSC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHH--cCCcCcCcCCccCCcc
Confidence 334668999999988655444567876 9999999999995 4479999999986543
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.65 E-value=1.1e-08 Score=68.64 Aligned_cols=51 Identities=22% Similarity=0.537 Sum_probs=41.0
Q ss_pred CCCCeeeEcccCcccCCCccccc-cccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAP-CACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~P-C~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
++...|.||++...+++.....| |+ |.+|..|+.+|++. +.+||+|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 45678999999987655556666 65 99999999999954 678999998764
No 7
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=72.74 Aligned_cols=54 Identities=26% Similarity=0.591 Sum_probs=43.0
Q ss_pred CCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
...+...|.||++....+......||. |.+|..|+.+|++. +.+||+|++.+.+
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKA--NRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHH--CSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHc--CCcCcCcCCcCCC
Confidence 345678999999887655444678876 99999999999965 4689999988763
No 8
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=5e-08 Score=69.32 Aligned_cols=52 Identities=21% Similarity=0.485 Sum_probs=41.2
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
+....|.||++...+.....+.||. |.+|..|+.+|++.+ .+||+|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVR--KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHC--SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcC--CcCCCcCccccc
Confidence 4568999999998655443455876 999999999999764 499999988753
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.57 E-value=4.6e-08 Score=74.98 Aligned_cols=57 Identities=21% Similarity=0.402 Sum_probs=42.2
Q ss_pred CCCeeeEcccCcccCC---------------CccccccccCCCcccccHHHHHHHHHh---hCCcccccccCcccCCccC
Q 026583 17 TTSHCRICHEEEFESC---------------NSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQEYGPGYTA 78 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~---------------~~li~PC~C~GSlk~vH~~CL~rWl~~---k~~~~CeiCk~~y~~~y~~ 78 (236)
....|.||++...+.. .....||. |.||..||.+|+.. +...+||+|++.|......
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~ 98 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGT 98 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCC
Confidence 3469999998864321 01157777 99999999999965 3578999999999755443
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.49 E-value=7.1e-08 Score=64.53 Aligned_cols=51 Identities=27% Similarity=0.561 Sum_probs=40.9
Q ss_pred CCCCeeeEcccCcccC-CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFES-CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~-~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
.....|.||++...++ ......||. |.+|..|+.+|++.+ .+||+|++.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 4568899999987442 345678886 999999999999765 79999998764
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2.7e-07 Score=67.58 Aligned_cols=51 Identities=22% Similarity=0.559 Sum_probs=38.0
Q ss_pred CCCCeeeEcccCccc-----------CCCccccc-cccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFE-----------SCNSLEAP-CACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e-----------~~~~li~P-C~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
.+...|.||++...+ ++.....| |+ |.+|..||.+|++. +.+||+|++++.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQ--NNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTT--CCBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHh--CCCCCCcCCCcc
Confidence 356779999887743 22234444 55 99999999999964 469999999875
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=3.3e-07 Score=63.54 Aligned_cols=52 Identities=21% Similarity=0.451 Sum_probs=40.8
Q ss_pred CCCCCeeeEcccCcccC----CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 15 PETTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~----~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
......|.||++...+. ......||. |.+|..|+.+|+.. +.+||+|++.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 34678999999987542 122567887 99999999999965 569999998875
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=6.2e-07 Score=65.11 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=43.2
Q ss_pred CCCCeeeEcccCcccCCC-ccccccccCCCcccccHHHHHHHHHhh-CCcccccccCcccC
Q 026583 16 ETTSHCRICHEEEFESCN-SLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEICLQEYGP 74 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~-~li~PC~C~GSlk~vH~~CL~rWl~~k-~~~~CeiCk~~y~~ 74 (236)
.+...|.||++...+... +...||. |.+|..|+.+|++.+ +...||+|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 456889999988865332 5677886 999999999999865 46899999998753
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.27 E-value=2.5e-07 Score=64.73 Aligned_cols=53 Identities=21% Similarity=0.444 Sum_probs=41.6
Q ss_pred CCCCCCeeeEcccCcccC----CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 14 NPETTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~----~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
.+++...|.||++...+. ......||. |.+|..|+.+|++.+ .+||+|++.+.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccC
Confidence 455778999999886432 223577887 999999999999654 69999999876
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=2.8e-07 Score=65.26 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=41.0
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCCc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGY 76 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~y 76 (236)
.+...|.||++...+ +...||. |.+|..|+.+|+. .+..||+|+..+....
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~Cg-----H~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCK-----HVFCYLCVKGASW--LGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTT-----EEEEHHHHHHCTT--CSSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCC---CEEccCC-----CHHHHHHHHHHHH--CCCcCcCcCchhCHhh
Confidence 456789999987753 3667876 9999999999995 3479999999987544
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.26 E-value=2.1e-07 Score=64.88 Aligned_cols=50 Identities=30% Similarity=0.660 Sum_probs=40.4
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
+....|.||++...+ .....||+ |.+|..|+.+|+.. +.+||+|++++..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~C~-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALPCL-----HAFCYVCITRWIRQ--NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETTTT-----EEESTTHHHHHHHH--SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecCCC-----CeeHHHHHHHHHhC--cCcCcCCChhhHh
Confidence 466899999988753 23678887 99999999999964 3699999988763
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.21 E-value=5.1e-07 Score=61.67 Aligned_cols=50 Identities=18% Similarity=0.408 Sum_probs=39.6
Q ss_pred CCCeeeEcccCcccC----CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~----~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+...|.||++...+. ......||. |.+|..|+.+|++. +.+||+|++.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCC
Confidence 457899999887532 222567877 99999999999975 569999998876
No 18
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.20 E-value=8.9e-07 Score=68.83 Aligned_cols=50 Identities=24% Similarity=0.602 Sum_probs=38.1
Q ss_pred CCCeeeEcccCcccC---------------CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFES---------------CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~---------------~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
....|-||++...+. ......||+ |.+|..||.+|+. .+.+||+|++.|.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~--~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLK--TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHT--TCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHH--cCCcCcCCCCcce
Confidence 457899998876532 112346776 9999999999995 4679999999875
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.16 E-value=1.6e-06 Score=61.98 Aligned_cols=48 Identities=25% Similarity=0.528 Sum_probs=40.6
Q ss_pred CCCeeeEcccCcccCCCccccc-cccCCCcccccHHHHHHHHHhhCCcccccccCcc
Q 026583 17 TTSHCRICHEEEFESCNSLEAP-CACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~P-C~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y 72 (236)
....|.||++...+ +...| |. |.+|+.||.+|+..++...||+|++++
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 14 DELLCLICKDIMTD---AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGGSCSSSCCCCTT---CEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCcCCChHHhC---CeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 45789999888764 36788 77 999999999999887778999999874
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.5e-06 Score=60.48 Aligned_cols=50 Identities=16% Similarity=0.373 Sum_probs=40.5
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
..+...|.||++...+. ...||. |.+|..|+.+|++ ++...||+|++++.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTECG-----HRFCESCMAALLS-SSSPKCTACQESIV 61 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCC
T ss_pred CCcCCCCCCCChHhcCe---eECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCC
Confidence 34668899999877543 457877 9999999999996 45679999998875
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=1.2e-06 Score=61.75 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=41.0
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh-hCCcccccccCccc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE-KGNTTCEICLQEYG 73 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~-k~~~~CeiCk~~y~ 73 (236)
.+....|.||++...+ +...||. |.+|..|+.+|++. ++...||+|++.+.
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 3466899999987754 3566876 99999999999964 35679999998875
No 22
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=7.1e-07 Score=62.62 Aligned_cols=47 Identities=28% Similarity=0.699 Sum_probs=40.0
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
.+...|.||++...+ ...||. |.+|..|+.+|+. +..+||+|++++.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTT
T ss_pred CCCCCCeeCCcCccC----cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCccc
Confidence 456899999988754 678887 9999999999995 6789999998876
No 23
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.10 E-value=3e-06 Score=62.32 Aligned_cols=51 Identities=18% Similarity=0.520 Sum_probs=40.5
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+....|-||++....+ ..-+ .|. +-+|..||.+|++.+++.+||+|++.+.
T Consensus 13 ~~i~~C~IC~~~i~~g---~~C~-~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG---QSCE-TCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSS---EECS-SSC---CEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccC---CccC-CCC---chhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4568999999887643 1222 565 8899999999998777799999999886
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=3.5e-06 Score=60.87 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=39.9
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+....|.||++...+ +.+.||. |.+|..|+.+|+.. ...||+|++.+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 455789999988754 4678887 99999999999964 679999999986
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.04 E-value=4.7e-06 Score=59.61 Aligned_cols=51 Identities=27% Similarity=0.486 Sum_probs=41.7
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh----CCcccccccCcccC
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK----GNTTCEICLQEYGP 74 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k----~~~~CeiCk~~y~~ 74 (236)
.....|.||++...+ +...||. |.+|..|+.+|+..+ +...||+|+..+..
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCc---ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 356789999988754 3577876 999999999999874 37899999998763
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=6.5e-06 Score=58.82 Aligned_cols=51 Identities=25% Similarity=0.584 Sum_probs=41.8
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh----hCCcccccccCcccC
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE----KGNTTCEICLQEYGP 74 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~----k~~~~CeiCk~~y~~ 74 (236)
.....|.||++...+ +...||. |.+|..|+.+|+.. .+...||+|++.+..
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCC---ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 456899999988754 3566876 99999999999987 357899999998864
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.98 E-value=4.5e-06 Score=61.45 Aligned_cols=50 Identities=24% Similarity=0.486 Sum_probs=42.1
Q ss_pred CCCCCeeeEcccCcccCCCccccc-cccCCCcccccHHHHHHHHHhhCCcccccccCcc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAP-CACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~P-C~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y 72 (236)
..+.-.|.||++...+ +...| |. |.+++.||.+|+..++...||+|+..+
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcC---ceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3466899999987754 46778 76 999999999999887889999999987
No 28
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=7.1e-06 Score=58.07 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=39.4
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
+....|.||++...+. ....||. |.+|..|+.+|++. +..||+|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHCc--CEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 3457899999887642 2345887 99999999999965 5799999998863
No 29
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=5.4e-06 Score=55.63 Aligned_cols=45 Identities=24% Similarity=0.672 Sum_probs=36.6
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh-hCCcccccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE-KGNTTCEIC 68 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~-k~~~~CeiC 68 (236)
.....|.||++...+. ...||. |.+|..|+.+|++. ++..+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 4568999999887643 567877 99999999999864 467899998
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=6.9e-06 Score=56.46 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=37.0
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh-CCcccccc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEIC 68 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k-~~~~CeiC 68 (236)
.+....|.||++...+ +...||. |.+|+.||.+|++.+ +..+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 3466899999988764 3566877 999999999999853 56799998
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.90 E-value=7.6e-06 Score=58.42 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=41.1
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
...-.|.||++...+ +...||. |.+++.|+.+|+. ++..+||+|++++..
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~Cg-----H~fc~~Ci~~~~~-~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVSTG-----QTYERSSIQKWLD-AGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEETTT-----EEEEHHHHHHHHT-TTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC---CEEcCCC-----CeecHHHHHHHHH-HCcCCCCCCcCCCCh
Confidence 466899999987754 4677877 9999999999996 357899999998863
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.88 E-value=1.8e-06 Score=68.61 Aligned_cols=50 Identities=22% Similarity=0.513 Sum_probs=0.9
Q ss_pred CCCeeeEcccCcccC-------------C--CccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFES-------------C--NSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~-------------~--~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
....|-||++...+. + ..+..||+ |.+|..||.+|+.. +.+||+|++.|.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~--~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHc--CCcCCCCCCeee
Confidence 347899999886431 1 11234666 99999999999965 579999999875
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.86 E-value=3.1e-06 Score=60.28 Aligned_cols=52 Identities=29% Similarity=0.515 Sum_probs=41.7
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh-----CCcccccccCcccC
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK-----GNTTCEICLQEYGP 74 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k-----~~~~CeiCk~~y~~ 74 (236)
-++...|.||++...+ +...||. |.+|..|+.+|++.+ +...||+|+..+..
T Consensus 9 ~~~~~~C~IC~~~~~~---p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTE---PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSS---CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCC---eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3467899999988754 3567877 999999999999763 37899999998763
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.84 E-value=7.6e-06 Score=61.84 Aligned_cols=49 Identities=27% Similarity=0.562 Sum_probs=40.0
Q ss_pred CCCeeeEcccCcccCCCccc-cccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 17 TTSHCRICHEEEFESCNSLE-APCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li-~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
+...|.||++...+ +.. .||. |.+|..||.+|+..++ ..||+|+..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCccCCccccC---ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 34689999988764 355 8887 9999999999997653 799999999853
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.83 E-value=9.5e-06 Score=56.18 Aligned_cols=50 Identities=14% Similarity=0.353 Sum_probs=38.2
Q ss_pred CCeeeEccc-CcccCC-CccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 18 TSHCRICHE-EEFESC-NSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 18 ~~~CRIC~~-e~~e~~-~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
...|.||++ ...++. ..+..||. |.+|..|+.+|+.. +...||+|+..+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCccc
Confidence 468999998 443322 12457887 99999999999863 5679999999875
No 36
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.83 E-value=5.6e-06 Score=65.91 Aligned_cols=45 Identities=29% Similarity=0.626 Sum_probs=37.5
Q ss_pred CeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
..|.||++...+ +...||. |.+|..|+.+|+. .+.+||+|++.+.
T Consensus 54 ~~C~iC~~~~~~---~~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIE---AVTLNCA-----HSFCSYCINEWMK--RKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSS---EEEETTS-----CEEEHHHHHHHTT--TCSBCTTTCCBCC
T ss_pred CCCcccCcccCC---ceECCCC-----CCccHHHHHHHHH--cCCcCCCCCCcCC
Confidence 579999988754 4678886 9999999999995 4678999998875
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.80 E-value=7.1e-06 Score=63.08 Aligned_cols=53 Identities=19% Similarity=0.378 Sum_probs=40.9
Q ss_pred CCCCCeeeEcccCcccC----CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 15 PETTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~----~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
+.+...|.||++...++ ......||. |.+|..|+.+|++. +.+||+|++.+..
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 60 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTT--CSBCTTTCCBCTT
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHh--CCCCCCCCCcCcc
Confidence 34668999999887532 223677887 99999999999954 4699999998863
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.77 E-value=1.5e-05 Score=61.97 Aligned_cols=48 Identities=25% Similarity=0.561 Sum_probs=39.4
Q ss_pred CCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
...|.||++...+ +...||. |.+|+.|+.+|+. .+...||+|+..+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 3679999988764 3667887 9999999999997 455699999999864
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.76 E-value=2.4e-05 Score=57.37 Aligned_cols=54 Identities=26% Similarity=0.448 Sum_probs=43.0
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
.++...|.||++.... ......||.|. |.+++.|+.+|.+. +...||+|++.|.
T Consensus 8 ~~~~~~CpICle~~~~-~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEI-DDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCT-TTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCcc-ccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccC
Confidence 3567899999997643 23467888886 99999999999753 5789999999986
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.73 E-value=1.4e-05 Score=59.78 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=37.9
Q ss_pred CCeeeEcccCcccCCCccc-cccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 18 TSHCRICHEEEFESCNSLE-APCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li-~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
...|.||++...+ +.. .||. |.+|..|+.+|+. .+..||+|+..+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCS-----HNYCSLCIRKFLS--YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTC-----CEEEHHHHHHHHT--TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECCCC-----CHhhHHHHHHHHH--CCCCCCCCCCcCCh
Confidence 4689999988754 234 4787 9999999999996 45799999998763
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.72 E-value=2.3e-05 Score=59.20 Aligned_cols=50 Identities=22% Similarity=0.513 Sum_probs=40.0
Q ss_pred CCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhh-CCcccccccCcccCC
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEK-GNTTCEICLQEYGPG 75 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k-~~~~CeiCk~~y~~~ 75 (236)
...|.||++...+ +...||. |.+|..|+.+|+..+ +...||+|+..+...
T Consensus 21 ~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC---eEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 4589999987754 3567877 999999999999764 457999999988643
No 42
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.62 E-value=2.2e-05 Score=73.26 Aligned_cols=60 Identities=17% Similarity=0.520 Sum_probs=44.5
Q ss_pred CCCCCCeeeEcccCcccCCCccccccc---cCCCcccccHHHHHHHHHhhCC---------cccccccCcccCCc
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCA---CSGTVKFAHRDCIQRWCYEKGN---------TTCEICLQEYGPGY 76 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~---C~GSlk~vH~~CL~rWl~~k~~---------~~CeiCk~~y~~~y 76 (236)
..+....|-||++...++...-...|. |+ +.+|..||.+|+++.++ ..||.|+++....|
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 345778999999987653322244563 66 99999999999987533 58999999876555
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.62 E-value=2.3e-05 Score=60.62 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=41.0
Q ss_pred CCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
..+....|.||++...+ +...||. |.++..|+.+|+..++ .+||+|+..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALRE---AVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcC---eEECCcC-----ChhhHHHHHHHHhhCC-CCCCCCCCCcCH
Confidence 33456799999987754 3567876 9999999999997654 499999998864
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.59 E-value=2.6e-05 Score=63.45 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=37.4
Q ss_pred CeeeEcccCcccCCCccc-cccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 19 SHCRICHEEEFESCNSLE-APCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li-~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
..|.||++...+ +.. .||. |.+|..|+.+|+.. +...||+|+..+.
T Consensus 55 ~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN---TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS---EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCcccChHhhC---cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 489999988764 344 4877 99999999999973 4789999999874
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.53 E-value=4.5e-05 Score=62.06 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=39.9
Q ss_pred CCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCC
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~ 75 (236)
...|.||++...+ +...||. |.+++.||.+|+.. +...||+|+..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 3689999987754 4668887 99999999999974 556899999998754
No 46
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.51 E-value=3.5e-05 Score=58.53 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=38.8
Q ss_pred CCCeeeEcccCcccCCCcccc-ccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 17 TTSHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~-PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
....|.||++...+ +... ||. |.+|..|+.+|+.. +..||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECL-----HSFCKTCIVRYLET--SKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTC-----CEEEHHHHHHHHTS--CSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC---cCEeCCCC-----ChhhHHHHHHHHHh--CCcCcCCCccccc
Confidence 45789999988754 3454 887 99999999999954 4899999998763
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.46 E-value=4.1e-05 Score=58.76 Aligned_cols=53 Identities=19% Similarity=0.378 Sum_probs=39.8
Q ss_pred CCCCCeeeEcccCcccC----CCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 15 PETTSHCRICHEEEFES----CNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~----~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
.++...|.||++...+. ......||. |.+|..|+.+|+.. +.+||+|+..+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHc--CCCCCCCCCcCCh
Confidence 35678899999876531 112455665 99999999999965 4599999998763
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.43 E-value=7.8e-05 Score=57.13 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=39.3
Q ss_pred CCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
...|.||++...+ +...||. |.++..|+.+|+..+ ...||+|+.++..
T Consensus 23 ~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcC---cEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 4689999988754 3567876 999999999999763 5689999999864
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.24 E-value=4.1e-05 Score=58.63 Aligned_cols=48 Identities=25% Similarity=0.562 Sum_probs=39.0
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+.-.|.||++...+ +...||. |.++..|+.+|+. +++..||+|++.+.
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLPCN-----HTLCKPCFQSTVE-KASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECTTS-----CEECHHHHCCCCC-TTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCc---eeEcCCC-----CHHhHHHHHHHHh-HCcCCCCCCCcccC
Confidence 44679999987754 4667887 9999999999995 34689999999875
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.20 E-value=0.00019 Score=67.38 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=39.9
Q ss_pred CCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
...|.||++...+ +...||. |.+|..|+.+|+.. +...||+|+..+..
T Consensus 332 ~~~C~ICle~~~~---pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC---eEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 3689999987753 4778998 88999999999963 56799999998764
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.87 E-value=0.00019 Score=55.36 Aligned_cols=45 Identities=18% Similarity=0.370 Sum_probs=37.2
Q ss_pred CCCeeeEcccCcccCCCcccc-ccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~-PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
..-.|.||++...+ +... ||. |.+++.|+.+|+. ..||+|+..+.
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC---ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 35789999988754 3555 887 9999999999995 78999999875
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.80 E-value=0.00047 Score=56.09 Aligned_cols=51 Identities=22% Similarity=0.413 Sum_probs=40.5
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
.++.-.|.||++...+ +...||. |.+.+.|+.+|++.++ .+||+|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~~---pv~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALRE---AVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcC---cEECCCC-----CHHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence 3456799999988754 3567766 9999999999997654 499999988764
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.79 E-value=0.00029 Score=50.42 Aligned_cols=43 Identities=19% Similarity=0.617 Sum_probs=35.9
Q ss_pred CCeeeEcccCcccCCCccccccccCCCccc-ccHHHHHHHHHhhCCcccccccCcccC
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~-vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
...|.||++...+ +...||. |. +...|+.+| ..||+|++.+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 4789999987653 4677987 88 999999999 699999998763
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.73 E-value=0.00059 Score=47.50 Aligned_cols=50 Identities=16% Similarity=0.429 Sum_probs=37.6
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCccc-ccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~-vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+....|.||++...+.. .+..||+ |. +=..|+.+|.+. +..||+|++++.
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHGRTG-----HLVTCFHCARRLKKA--GASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEETTEE-----EEEECHHHHHHHHHT--TCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeE-EEecCCC-----CHhHHHHHHHHHHHh--CCcCCCcCchhh
Confidence 35678999998764321 1234998 87 789999999854 479999999875
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.65 E-value=0.00074 Score=47.15 Aligned_cols=47 Identities=19% Similarity=0.387 Sum_probs=36.4
Q ss_pred CCCeeeEcccCcccCCCcccc--ccccCCCccc-ccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFESCNSLEA--PCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~--PC~C~GSlk~-vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+...|.||++...+. ... ||+ |. +=..|+.+|.+ .+..||+|++++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTG-----HLMACFTCAKKLKK--RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEE-----EEEECHHHHHHHHH--TTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCC-----ChhhHHHHHHHHHH--cCCcCCCcCcchh
Confidence 557899999877542 444 998 77 45899999995 4568999999875
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.57 E-value=0.0013 Score=56.17 Aligned_cols=48 Identities=15% Similarity=0.020 Sum_probs=39.5
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
..-.|.||++-..+ |.++||. |-+-+.||.+|+..++. +||+|+.++.
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~~g-----h~f~~~~i~~~~~~~~~-~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITPSG-----ITYDRKDIEEHLQRVGH-FNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCSS---EEECSSC-----CEEETTHHHHHHHHTCS-SCTTTCCCCC
T ss_pred cccCCcCcCCHhcC---CeECCCC-----CEECHHHHHHHHHHCCC-CCcCCCCCCc
Confidence 56789999988764 4789986 88999999999986544 4999999886
No 57
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.55 E-value=0.0013 Score=57.50 Aligned_cols=50 Identities=20% Similarity=0.613 Sum_probs=39.4
Q ss_pred CCCCeeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
+....|-||.+--..+ .-|. |. .-+|..|+.+|++.+++..||.|+..++
T Consensus 178 ~~i~~C~iC~~iv~~g-----~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG-----QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TTCCBCTTTCSBCSSC-----EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCCcCcchhhHHhCC-----cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3578999998766432 2232 55 8899999999998877889999999876
No 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.47 E-value=0.00077 Score=45.62 Aligned_cols=45 Identities=20% Similarity=0.446 Sum_probs=36.4
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
.+...|.||++...+ +...||. |.++..|+.+| ...||+|++.+.
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC---eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEee
Confidence 356789999988764 3678887 88999999874 578999998875
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.47 E-value=0.0026 Score=46.75 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=40.3
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
...-.|.||++-..+ +.+.||. +-+-+.|+.+|+.. +.+||+|+.++..
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred chheECcccCchhcC---CeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 356899999887764 4788875 88999999999974 5799999998863
No 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.45 E-value=0.00049 Score=55.40 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=38.6
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y 72 (236)
+..-.|.||++...+ +..+||. |.+++.||.+|++ ++...||+|+.+.
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~Cg-----H~FC~~Ci~~~~~-~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQCG-----HRYCSFCLASILS-SGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHGG-GSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcC---cEECCCC-----CccCHHHHHHHHh-cCCCCCCCCCCcc
Confidence 456789999987754 3667777 9999999999995 3557999999864
No 61
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.32 E-value=0.0024 Score=48.57 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=39.8
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
..-.|.||++-..+ +.+.||. +-+-+.||.+|+. ++.+||+|+.++..
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~cG-----htf~r~~I~~~l~--~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLPSG-----TIMDRSIILRHLL--NSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEETTT-----EEEEHHHHHHHTT--SCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccC---CeECCCC-----CEEchHHHHHHHH--cCCCCCCCCCCCCh
Confidence 56789999887754 4788875 8899999999996 46799999998863
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.18 E-value=0.0042 Score=46.26 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=39.2
Q ss_pred CCCCCeeeEcccCcccCCCccccc-cccCCCcccccHHHHHHHHHhh----CCccccc--ccCc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAP-CACSGTVKFAHRDCIQRWCYEK----GNTTCEI--CLQE 71 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~P-C~C~GSlk~vH~~CL~rWl~~k----~~~~Cei--Ck~~ 71 (236)
+...-.|.||++-..+ +.+.| |. |-+-+.||.+|+... +..+||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~d---PV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK---PVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSS---EEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcC---CEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3466789999987754 47776 77 899999999999864 4679999 9866
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.18 E-value=0.0025 Score=47.12 Aligned_cols=50 Identities=20% Similarity=0.424 Sum_probs=38.2
Q ss_pred CCCCeeeEcccCcccCCCccc--cccccCCCcccccHHHHHHHHHhh---C---Cccccc--ccCcc
Q 026583 16 ETTSHCRICHEEEFESCNSLE--APCACSGTVKFAHRDCIQRWCYEK---G---NTTCEI--CLQEY 72 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li--~PC~C~GSlk~vH~~CL~rWl~~k---~---~~~Cei--Ck~~y 72 (236)
.+...|.||++....+. +. .||. |.+-+.|+.+++..+ + ...||. |+..+
T Consensus 3 ~~~~~C~IC~~~~~~~~--~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQ--MTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp CSBCCCSSSCCCCBGGG--EEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCCcCCcccCccccccc--ceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 35678999998875432 33 4787 999999999999764 2 469999 99873
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.15 E-value=0.0029 Score=45.04 Aligned_cols=42 Identities=19% Similarity=0.633 Sum_probs=33.7
Q ss_pred CeeeEcccCcccCCCccccccccCCCccc-ccHHHHHHHHHhhCCcccccccCcccC
Q 026583 19 SHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li~PC~C~GSlk~-vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
..|.||++...+ +...||. |. +...|+.+. ..||+|+.++..
T Consensus 26 ~~C~IC~~~~~~---~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA---IVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC---BCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC---EEEecCC-----CHHHHHHHhhCC------CCCccCCceecC
Confidence 579999987643 4678987 88 999999643 699999998764
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.09 E-value=0.0059 Score=43.16 Aligned_cols=48 Identities=19% Similarity=0.501 Sum_probs=37.2
Q ss_pred CCCCCCeeeEcccCcccCCCccccccccCCCccc-ccHHHHHHHHHhhCCcccccccCcccCC
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~-vH~~CL~rWl~~k~~~~CeiCk~~y~~~ 75 (236)
..++...|.||++...+ ....||. |. +-..|+.+ ...||+|++.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~---~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN---WVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSCCC---CEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCCCC---EEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhce
Confidence 33456899999987643 4789998 77 88899883 36999999988643
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=95.87 E-value=0.0041 Score=52.47 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=40.2
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
..-.|.||++-..+ |.+.||. +-+=+.||.+|+...+. +||+|+.++..
T Consensus 105 ~~f~CPI~~elm~D---PV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMRE---PCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred HhhcccCccccCCC---CeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 56789999887764 4788876 88999999999987554 79999998863
No 67
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.00 E-value=0.015 Score=43.93 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=39.0
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
..-.|.||++-..+ +.+.||. | |-+-+.||.+|+.. +.+||+|+.++..
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred HhcCCcCccccccC---CeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 56789999887764 4678865 2 66889999999964 5699999998863
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=94.45 E-value=0.0063 Score=55.93 Aligned_cols=44 Identities=20% Similarity=0.626 Sum_probs=36.5
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCccc-ccHHHHHHHHHhhCCcccccccCcccC
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~-vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
+...|.||++...+ +...||. |. +...|+.+| ..||+|+..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 35789999988753 4677998 88 999999998 589999998863
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=94.32 E-value=0.012 Score=42.72 Aligned_cols=44 Identities=25% Similarity=0.600 Sum_probs=35.0
Q ss_pred CCeeeEcccCcccCCCccccccccCCCccc-ccHHHHHHHHHhhCCcccccccCcccCC
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKF-AHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~-vH~~CL~rWl~~k~~~~CeiCk~~y~~~ 75 (236)
...|.||++...+ +...||. |. +=..|+.+| ..||+|+..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 4689999987643 4678998 77 678999887 3999999998643
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=92.57 E-value=0.04 Score=49.37 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=39.5
Q ss_pred CCCeeeEcccCcccCCCccc-cccccCCCcccccHHHHHHHHHhhCCccccc--ccCccc
Q 026583 17 TTSHCRICHEEEFESCNSLE-APCACSGTVKFAHRDCIQRWCYEKGNTTCEI--CLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li-~PC~C~GSlk~vH~~CL~rWl~~k~~~~Cei--Ck~~y~ 73 (236)
..-.|.||++-..+ |.. ..|+ |-+=+.||.+|+...+...||+ |++.+.
T Consensus 180 ~el~CPIcl~~f~D---PVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEA---PLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSS---EEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccC---CeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 45789999887754 244 3666 8899999999998767789999 999875
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=92.29 E-value=0.071 Score=36.91 Aligned_cols=45 Identities=9% Similarity=0.172 Sum_probs=34.5
Q ss_pred CeeeEcccCcccCCCcccc-ccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 19 SHCRICHEEEFESCNSLEA-PCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li~-PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
-.|.||++--.+ +.+. +|. +-+=+.|+.+|++..+ +||+++.++.
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCC
T ss_pred EEecCCCCCCCC---CEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCC
Confidence 468888777654 3566 555 7899999999998654 5999998875
No 72
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.81 E-value=0.36 Score=36.80 Aligned_cols=54 Identities=24% Similarity=0.469 Sum_probs=39.4
Q ss_pred CCCeeeEcccCcc-cCCCccccccc-cCCCcccccHHHHHHHHHhhCCcccccccCcccC
Q 026583 17 TTSHCRICHEEEF-ESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGP 74 (236)
Q Consensus 17 ~~~~CRIC~~e~~-e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~ 74 (236)
....|.||-++-. ..+..+...|+ |. --|=+.|+.-=.+ .++..|++||++|+-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~---FPvCrpCyEYErk-eG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG---FPACRPCYEYERR-EGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC---CCCCHHHHHHHHH-TSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC---ChhhHHHHHHHHh-ccCccccccCCcccc
Confidence 5589999987753 12333666676 54 5588999877664 488999999999973
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.40 E-value=0.067 Score=38.03 Aligned_cols=49 Identities=18% Similarity=0.430 Sum_probs=35.0
Q ss_pred CCCCCCeeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHHh--hCCcccccccCc
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~ 71 (236)
.+.....|.||....+ | .-|. |. +.+|..||.-.+.. ++.+.|+.|...
T Consensus 8 ~~~~~~~C~vC~~~~~-----l-l~Cd~C~---~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 8 NLAPGARCGVCGDGTD-----V-LRCTHCA---AAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTCCCTTTSCCTT-----C-EECSSSC---CEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCCcCCCCCCCe-----E-EECCCCC---CceecccCCCccCcCCCCCEECccccCC
Confidence 4446678999975421 3 3344 44 89999999877754 378999999855
No 74
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=85.55 E-value=0.16 Score=36.58 Aligned_cols=55 Identities=27% Similarity=0.567 Sum_probs=37.6
Q ss_pred CCCCCCCCeeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHHhhCCcccccccC
Q 026583 12 KSNPETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQ 70 (236)
Q Consensus 12 ~s~s~~~~~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~ 70 (236)
.+...+...|.||...+.+..+.| .-|. |. ..+|..|+.--..-++.+.|+.|..
T Consensus 10 ~~~~~~~~~C~vC~~~~s~~~~~l-l~CD~C~---~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 10 QSLIDEDAVCSICMDGESQNSNVI-LFCDMCN---LAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCCSSCSCSSSCCCCCCSSSCE-EECSSSC---CEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCCCCCCCCCCCCCCCCCE-EECCCCC---CccccccCCCCcCCCCCcCCccCcC
Confidence 456677899999987763322333 3344 55 7999999864333457899999974
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.16 E-value=1.1 Score=33.93 Aligned_cols=49 Identities=22% Similarity=0.563 Sum_probs=34.4
Q ss_pred CCCCCeeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHH------------H--hhCCcccccccC
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWC------------Y--EKGNTTCEICLQ 70 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl------------~--~k~~~~CeiCk~ 70 (236)
......|-||..-..+ -..||+ |. +-+|..||++== + ....+.|+-|..
T Consensus 12 ~~~D~~C~VC~~~t~~----~l~pCRvC~---RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAE----SLFPCRVCT---RVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCCCSS----CCSSCSSSS---SCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCcccccccc----ceecccccc---ccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 3477899999543332 478998 77 999999999851 0 113578888863
No 76
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=78.44 E-value=0.23 Score=40.98 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=34.2
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh--hCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~y~ 73 (236)
.+...|.+|..+++ ..-|. +--+.+|..|+..-+.. ++.+.|+.|+..-.
T Consensus 2 ~~~~~C~~C~~~g~------ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 2 PNEDWCAVCQNGGE------LLCCE--KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSCSSCTTTCCCSS------CEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCccccCCCCCe------eeecC--CCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 35678999985532 33343 33389999998665543 47899999997643
No 77
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=78.04 E-value=0.35 Score=35.95 Aligned_cols=54 Identities=26% Similarity=0.547 Sum_probs=36.2
Q ss_pred CCCCCeeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHHhhCCcccccccCcc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y 72 (236)
.++...|.||...+.+..+ -+.-|. |. ..+|..|+.--..-++.+.|+.|...-
T Consensus 22 ~~~~~~C~vC~~~~s~~~~-~ll~CD~C~---~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSN-VILFCDMCN---LAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEE-EEEECSSSC---CCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCC-CEEECCCCC---chhhcccCCCCccCCCceECccccCcc
Confidence 4567899999877633222 233443 44 789999986433445789999998543
No 78
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.89 E-value=0.18 Score=37.49 Aligned_cols=52 Identities=23% Similarity=0.516 Sum_probs=36.5
Q ss_pred CCeeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHH------hhCCcccccccCccc
Q 026583 18 TSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCY------EKGNTTCEICLQEYG 73 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~------~k~~~~CeiCk~~y~ 73 (236)
...|.+|.....+..+.| .-|. |. +.+|..|+.--+. -++.+.|+.|....+
T Consensus 16 ~~~C~vC~~~~~~~~~~l-l~CD~C~---~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQL-VECQECH---NLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCE-EECSSSC---CEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCce-EECCCCC---CeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 468999988765432333 3343 55 8999999976553 357899999987665
No 79
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=76.45 E-value=1.4 Score=35.86 Aligned_cols=46 Identities=30% Similarity=0.537 Sum_probs=34.1
Q ss_pred CCCCCeeeEcccCcccCCCcccccc-ccCCCcccccHHHHHHHHH---------hhCCccccccc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPC-ACSGTVKFAHRDCIQRWCY---------EKGNTTCEICL 69 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC-~C~GSlk~vH~~CL~rWl~---------~k~~~~CeiCk 69 (236)
.+.+..|++|.++.+ | .-| .|. +-+|..||.+=+. ..+.+.|+.|.
T Consensus 60 Dg~~d~C~vC~~GG~-----L-lcCD~Cp---r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN-----L-ICCDFCH---NAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCSS-----E-EECSSSC---CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCCc-----E-EeCCCCC---CeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 456789999987653 2 233 255 8999999997652 35899999997
No 80
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=75.31 E-value=3.3 Score=26.63 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 026583 161 DYPFALVTVLLLRACGIILPMYVLMRTITAIHN 193 (236)
Q Consensus 161 d~~f~l~tl~~Lra~Gillp~yI~~rai~~iq~ 193 (236)
+|+.+.+--++.|.+|+++|...|+-....||+
T Consensus 4 ~~aa~~LPsI~VPlVglvfPai~Mallf~yIe~ 36 (38)
T 1jb0_I 4 SYAASFLPWIFIPVVCWLMPTVVMGLLFLYIEG 36 (38)
T ss_dssp SSTTTTHHHHHHHHHHTHHHHHHHHHHHHHHHC
T ss_pred hhhhhhCChhhHhHHHHHHHHHHHHHHHHhhcc
Confidence 444444445578999999999999999888874
No 81
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=75.07 E-value=1.2 Score=31.40 Aligned_cols=36 Identities=31% Similarity=0.650 Sum_probs=21.4
Q ss_pred CCCCCCCeeeEcccCcccCCCcccccc--ccCCCcccccHHHH
Q 026583 13 SNPETTSHCRICHEEEFESCNSLEAPC--ACSGTVKFAHRDCI 53 (236)
Q Consensus 13 s~s~~~~~CRIC~~e~~e~~~~li~PC--~C~GSlk~vH~~CL 53 (236)
+.++....|.+|.....+.. .|+ -| .|+ +|+|..|+
T Consensus 3 ~~~~~~~~C~~C~~p~~~~~-~mI-~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 3 SSSDPVYPCGICTNEVNDDQ-DAI-LCEASCQ---KWFHRICT 40 (65)
T ss_dssp ------CBCTTTCSBCCTTS-CEE-EBTTTTC---CEEEHHHH
T ss_pred CCCCCcCcCccCCCccCCCC-CeE-ecccCcc---ccCchhcc
Confidence 44667789999998775432 233 34 355 99999997
No 82
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=71.64 E-value=0.6 Score=35.44 Aligned_cols=50 Identities=18% Similarity=0.431 Sum_probs=31.9
Q ss_pred CCCCCCCeeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHHh--hCCcccccc
Q 026583 13 SNPETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEIC 68 (236)
Q Consensus 13 s~s~~~~~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~--k~~~~CeiC 68 (236)
|...+...|.||....+.. .| .-|. |. +.+|..||.-+... ++.+.|+-|
T Consensus 2 s~~~~~~~C~~C~~~g~~~--~l-l~C~~C~---~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLL--DQ-FFCTTCG---QHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTT--TS-EECSSSC---CEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCCCCCCcCCCCCCCCc--CC-eECCCCC---CCcChHHhCCccccccccCccCCcC
Confidence 4456789999998876432 13 3343 44 89999999876642 245555444
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.88 E-value=5 Score=28.66 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=35.8
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh---hCCcccccccCcccCCc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQEYGPGY 76 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~---k~~~~CeiCk~~y~~~y 76 (236)
.....| ||....++. ..|+.==.|. .|+|..|+.-=-.. .....|+.|.....+.+
T Consensus 10 ~~~~~C-~C~~~~d~~-~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~ 68 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVN-HFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSI 68 (79)
T ss_dssp CCCCCS-TTSCSCCSS-SCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCB
T ss_pred CCccEE-EcCCccCCC-CceEEcCCCC---CcEEeeecCcccccccCCCeEECCCcccccCCCc
Confidence 345666 897766432 3465533465 99999998643322 25789999997765433
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.46 E-value=1 Score=29.57 Aligned_cols=45 Identities=27% Similarity=0.662 Sum_probs=29.4
Q ss_pred eeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHHh--hCCcccccccC
Q 026583 20 HCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (236)
Q Consensus 20 ~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~ 70 (236)
.|.||....+++. ..-|. |. +++|..|+.-=+.+ ++.+.|+.|..
T Consensus 2 ~C~vC~~~~~~~~---ll~Cd~C~---~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDK---LILCDECN---KAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSC---CEECTTTC---CEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCC---EEECCCCC---hhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5889987664332 33333 44 89999998543322 36789999974
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=69.37 E-value=0.48 Score=39.85 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=34.6
Q ss_pred CCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh--hCCcccccccCccc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQEYG 73 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~y~ 73 (236)
.+...|.+|..+++ +.-|. |--+.+|..|+...+.. +|.+.|+.|...-+
T Consensus 5 ~~~~~C~~C~~~g~------ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 5 PNEDWCAVCQNGGD------LLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSCSSBTTTCCCEE------EEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCc------eEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 35578999976542 23343 33489999998766543 47899999997654
No 86
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.42 E-value=1.4 Score=33.25 Aligned_cols=50 Identities=26% Similarity=0.618 Sum_probs=32.0
Q ss_pred CCCCCeeeEcccCcccCCCcccc--ccccCCCcccccHHHHHHHHHh--hCCcccccccCcc
Q 026583 15 PETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQEY 72 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~--PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~y 72 (236)
+.+...| ||..... + .|+. -|.|.. .|+|..|+. +.. ++++.|+.|...-
T Consensus 33 ~~e~~yC-iC~~~~~-g--~MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 33 PNEPTYC-LCHQVSY-G--EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCBCS-TTCCBCC-S--CCCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCcEE-ECCCCCC-C--CEeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3455677 8876543 2 2442 233542 699999997 433 3689999998543
No 87
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=66.87 E-value=0.48 Score=32.71 Aligned_cols=53 Identities=25% Similarity=0.489 Sum_probs=35.6
Q ss_pred CCCCCeeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHH-----hhCCcccccccCc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCY-----EKGNTTCEICLQE 71 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~-----~k~~~~CeiCk~~ 71 (236)
+++...|.+|.....+..+.| .-|. |. +.+|..|+.--+. .++.+.|+.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~l-l~Cd~C~---~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEM-VICDKCG---QGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCE-EECSSSC---CEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCE-EECCCCC---hHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 567789999987753322223 3333 55 8999999875432 3578999999743
No 88
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=66.06 E-value=1.1 Score=36.47 Aligned_cols=29 Identities=31% Similarity=0.475 Sum_probs=5.6
Q ss_pred ccccCCCCCCchhhhcccCCCCchhhhcc
Q 026583 202 VTYDDETSNSDEEEEEEEDDDDDDEEEQL 230 (236)
Q Consensus 202 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (236)
+..|+-.+.++++|+++++|+|+|+|-.+
T Consensus 98 ~vvDd~~~~~~~~~~~d~~~~d~d~e~~~ 126 (140)
T 3iab_B 98 EVLDEVITEGQADIDMESDVEDDDKETQL 126 (140)
T ss_dssp EEEEECC--------------------CE
T ss_pred EEEEeeeecCCcccccccccccccccchh
Confidence 56777766666555555555555555443
No 89
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=64.14 E-value=1.8 Score=29.76 Aligned_cols=49 Identities=18% Similarity=0.468 Sum_probs=32.9
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh--hCCcccccccCc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~ 71 (236)
......|.+|.... . | .-|. +--+.+|..||..-+.+ ++.+.|+.|...
T Consensus 8 ~~~~~~C~vC~~~g---~--l-l~CD--~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQGG---E--I-ILCD--TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCCS---S--E-EECS--SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCCC---c--E-EECC--CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34668899998642 1 2 2233 33389999999865432 478999999753
No 90
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.88 E-value=0.41 Score=32.34 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=31.8
Q ss_pred CCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh--hCCcccccccC
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~ 70 (236)
.++....|.+|.... . | .-|. +--+.+|..||..-+.. ++.+.|+.|..
T Consensus 5 ~~~~~~~C~vC~~~g---~--l-l~Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKSG---Q--L-LMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCSS---C--C-EECS--SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCCC---e--E-EEcC--CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345678899998642 1 2 3343 33389999998754432 36788888864
No 91
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=63.16 E-value=1.1 Score=32.11 Aligned_cols=53 Identities=25% Similarity=0.609 Sum_probs=33.6
Q ss_pred CCCCCCCCCeeeEcccCcccCCCcccc--ccccCCCcccccHHHHHHHHHh--hCCcccccccCc
Q 026583 11 FKSNPETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (236)
Q Consensus 11 ~~s~s~~~~~CRIC~~e~~e~~~~li~--PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~ 71 (236)
....+.+...| ||..... + .|+. -|.|.. .|+|..|+. +.. +++..|+.|...
T Consensus 9 ~~~d~~~~~~C-~C~~~~~-g--~MI~CD~~~C~~--~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 9 MPVDPNEPTYC-LCHQVSY-G--EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCCTTSCCCS-TTCCCSC-S--SEECCSCSSCSC--CCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred cccCCCCCCEE-ECCCCCC-C--CEeEeeCCCCCC--ccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34444566778 8976543 2 2543 222541 699999997 433 368999999854
No 92
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=62.97 E-value=3.9 Score=31.43 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=33.7
Q ss_pred CeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCCc
Q 026583 19 SHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPGY 76 (236)
Q Consensus 19 ~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~y 76 (236)
--|..|+-... + |+. |.. ||.=..||..-+ +....|+||+++.....
T Consensus 29 ~nCKsCWf~~k-~---LV~---C~d--HYLCl~CLtlmL--~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 29 QFCKSCWFENK-G---LVE---CNN--HYLCLNCLTLLL--SVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCSSCSCCS-S---EEE---CSS--CEEEHHHHHHTC--SSSSEETTTTEECCCCS
T ss_pred ccChhhccccC-C---eee---ecc--hhhHHHHHHHHH--hhccCCcccCCcCCcce
Confidence 56777766553 1 453 222 999999999888 56679999999986443
No 93
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=62.40 E-value=1.4 Score=35.74 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=33.9
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh---hCCcccccccCcc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQEY 72 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~---k~~~~CeiCk~~y 72 (236)
++....| +|....+++ ..|+.=-.|. .|+|..|+.---.. .+...|+.|+..-
T Consensus 5 ~~~~~~C-~C~~~~~~~-~~mi~Cd~C~---~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDES-KFYIGCDRCQ---NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTT-SCEEECTTTC---CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCC-CCEeECCCCC---chhChhhcCCchhhccCccCeecCCCcchh
Confidence 4566789 998765432 2355422455 99999998532222 4689999998653
No 94
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=60.71 E-value=1.2 Score=31.43 Aligned_cols=51 Identities=14% Similarity=0.311 Sum_probs=32.4
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh--hCCcccccccCcc
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQEY 72 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~y 72 (236)
+...|.||...... ..|+. |. +--.|+|..|+.--... .+...|+.|....
T Consensus 17 ~~~~C~~C~~~~~~--~~mi~-CD--~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDDG--SPMIG-CD--DCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCSS--CCEEE-CS--SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCCC--CCEEE-cC--CCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 44668889766532 12433 32 33399999998654432 2578999998654
No 95
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=58.93 E-value=2 Score=33.11 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCCCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh--hCCccccccc
Q 026583 12 KSNPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICL 69 (236)
Q Consensus 12 ~s~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk 69 (236)
+.+......|.+|...+ -..-|..++--+++|..||. +.. +|.+.|+-|.
T Consensus 9 ~~~~~~~~~C~~C~~~G------~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGG------ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp -CCCSSCSSCTTTCCCS------EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCcCCCCCCCCcCCCCC------cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 34456778899998432 14557511222899999997 543 3566676443
No 96
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=58.02 E-value=1.1 Score=30.86 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=31.4
Q ss_pred CCCCeeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHHh--hCCcccccccCc
Q 026583 16 ETTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~ 71 (236)
.....|.+|.... + +.-|. |. +.+|..||..-+.+ ++.+.|+.|...
T Consensus 7 ~~~~~C~vC~~~g---~---ll~Cd~C~---~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGG---E---LLCCDTCP---SSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCS---S---CBCCSSSC---CCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCC---C---EEEcCCCC---HHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4567899997542 1 23333 44 78999998754432 468899999753
No 97
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=57.46 E-value=8.9 Score=30.52 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=33.3
Q ss_pred CCCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHH------H---hhCCccccccc
Q 026583 14 NPETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWC------Y---EKGNTTCEICL 69 (236)
Q Consensus 14 ~s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl------~---~k~~~~CeiCk 69 (236)
.++.+..|++|.++.+ ++ -| .+--+-+|.+||.+=+ + .++.+.|..|.
T Consensus 53 ~Dg~~~~C~vC~dGG~-----Ll-cC--d~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGGN-----LI-CC--DFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TTSCBSSCTTTCCCSE-----EE-EC--SSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCCcCeecCCCCe-----eE-ec--CCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 4556788999987643 22 22 2333899999999752 2 35789999996
No 98
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=56.98 E-value=2.5 Score=32.37 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=22.1
Q ss_pred CeeeEcccCcccC----CCccccccc-cCCCcccccHHHHHHHH
Q 026583 19 SHCRICHEEEFES----CNSLEAPCA-CSGTVKFAHRDCIQRWC 57 (236)
Q Consensus 19 ~~CRIC~~e~~e~----~~~li~PC~-C~GSlk~vH~~CL~rWl 57 (236)
..|.||+....++ ...-..-|. |. +.+|..||..+.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~---~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCG---RSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSC---CEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCC---CccchhhCCChh
Confidence 5799998766321 111233343 55 889999998653
No 99
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.88 E-value=0.84 Score=34.10 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=33.0
Q ss_pred CCCeeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHHh--hCCcccccccCc
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~ 71 (236)
+...|.||....+++ ...-|. |. +.+|..||.-=+.. ++.+.|+.|...
T Consensus 15 ~~~~C~vC~~~~~~~---~ll~CD~C~---~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDD---KLLFCDGCD---DNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGG---GCEECTTTC---CEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCC---CEEEcCCCC---chhccccCCCCcccCCCCCcCCccCcCc
Confidence 456799998776532 344443 55 89999998633322 468899999754
No 100
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=55.10 E-value=1 Score=31.39 Aligned_cols=49 Identities=27% Similarity=0.573 Sum_probs=32.6
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh--hCCcccccccCc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~ 71 (236)
..+...|.||.... + | .-|. +--+.+|..||..-+.. ++.+.|+.|...
T Consensus 5 ~~~~~~C~vC~~~g---~--l-l~CD--~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDGG---E--L-ICCD--GCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCCS---S--C-EECS--SCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCCC---C--E-EEcC--CCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45678999998643 1 2 3333 33389999998754432 468899999743
No 101
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=50.33 E-value=11 Score=28.91 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=27.3
Q ss_pred ccccccCCCcccccHHHHHHHHHhhCCcccccccCccc
Q 026583 36 EAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYG 73 (236)
Q Consensus 36 i~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~ 73 (236)
..||+ |.+=.+|...|-. ++..+|+.|+.++.
T Consensus 17 mIPCk-----HvFCydCa~~~~~-~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 17 MIPCK-----HVFCYDCAILHEK-KGDKMCPGCSDPVQ 48 (101)
T ss_dssp EETTC-----CEEEHHHHHHHHH-TTCCBCTTTCCBCS
T ss_pred ecccc-----ccHHHHHHHHHHh-ccCCCCcCcCCeee
Confidence 67988 8999999999984 46789999998874
No 102
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=50.09 E-value=1.2 Score=30.27 Aligned_cols=47 Identities=23% Similarity=0.519 Sum_probs=30.8
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh--hCCcccccccCc
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~ 71 (236)
....|.+|.... . | .-|. +--+.+|..|+..-+.. ++.+.|+.|...
T Consensus 4 ~~~~C~vC~~~g---~--l-l~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKSG---Q--L-LMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCCS---S--C-EECS--SSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCCC---c--E-EEcC--CCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 457899997642 1 2 3333 33389999998754432 367889998744
No 103
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=49.75 E-value=24 Score=23.23 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=12.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhh
Q 026583 171 LLRACGIILPMYVLMRTITAIHNSI 195 (236)
Q Consensus 171 ~Lra~Gillp~yI~~rai~~iq~~r 195 (236)
..-++| ++-+.|++-.+-.+-|||
T Consensus 15 a~~vVG-vll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 15 ISAVVG-ILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHhheehh
Confidence 556666 444444444444444443
No 104
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=47.69 E-value=3.9 Score=32.97 Aligned_cols=8 Identities=100% Similarity=1.427 Sum_probs=0.0
Q ss_pred CCCchhhh
Q 026583 221 DDDDDEEE 228 (236)
Q Consensus 221 ~~~~~~~~ 228 (236)
||||||||
T Consensus 124 ~~~~~~~~ 131 (140)
T 2byk_A 124 DDDDDEEE 131 (140)
T ss_dssp --------
T ss_pred cccchhhh
Confidence 33344443
No 105
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.91 E-value=2.7 Score=28.69 Aligned_cols=54 Identities=15% Similarity=0.296 Sum_probs=35.4
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh---hCCcccccccCcc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE---KGNTTCEICLQEY 72 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~---k~~~~CeiCk~~y 72 (236)
+++...|.||....++. ..|+.==.|. .|+|..|+.--... .....|+.|....
T Consensus 3 ~~e~~~C~~C~~~~~~~-~~mI~Cd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYAAD-EFWICCDLCE---MWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCCSS-SCEEECSSSC---CEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccCCC-CCEEEccCCC---CCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 45678899998776433 3365422354 99999998643321 2568899998543
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=46.41 E-value=9.6 Score=28.87 Aligned_cols=35 Identities=23% Similarity=0.580 Sum_probs=22.4
Q ss_pred CCCeeeEcccCcccC----CCccccccc-cCCCcccccHHHHHH
Q 026583 17 TTSHCRICHEEEFES----CNSLEAPCA-CSGTVKFAHRDCIQR 55 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~----~~~li~PC~-C~GSlk~vH~~CL~r 55 (236)
....|.+|+.....+ .+.|+ -|. |. +.+|..||.-
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll-~C~~C~---~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELI-SCADCG---NSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCE-ECTTTC---CEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhce-EhhhcC---CCCCCchhcC
Confidence 567899998775321 12243 333 44 8999999963
No 107
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.37 E-value=7.7 Score=27.31 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=32.2
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHH-------hhCCcccccccCccc
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCY-------EKGNTTCEICLQEYG 73 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~-------~k~~~~CeiCk~~y~ 73 (236)
....| ||...... ..|+.==.|. .|+|..|+.-=.. ......|+.|.....
T Consensus 15 ~~~~C-~C~~~~~~--~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 15 NALYC-ICRQPHNN--RFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp TCCCS-TTCCCCCS--SCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCEE-ECCCccCC--CCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 34667 78766542 2365422465 9999999843221 236899999986543
No 108
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=43.84 E-value=7.2 Score=29.59 Aligned_cols=52 Identities=21% Similarity=0.431 Sum_probs=35.4
Q ss_pred CCeeeEcccCcccCCCcccccc-ccCCCcccccHHHHHHHH--------HhhCCcccccccCccc
Q 026583 18 TSHCRICHEEEFESCNSLEAPC-ACSGTVKFAHRDCIQRWC--------YEKGNTTCEICLQEYG 73 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC-~C~GSlk~vH~~CL~rWl--------~~k~~~~CeiCk~~y~ 73 (236)
.-.|.||.....+. ..|+.=| .|+ .|+|..|+.-=- +.++...|+.|...-.
T Consensus 3 ~~~C~iC~~p~~~~-~~mi~Cdd~C~---~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDD-QDAILCEASCQ---KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTT-SCEEECTTTTC---CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCC-CCEEEecCCcc---cccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 45799998886443 3466666 787 999999984111 0125789999997644
No 109
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=43.57 E-value=4.5 Score=33.09 Aligned_cols=18 Identities=33% Similarity=0.765 Sum_probs=3.4
Q ss_pred hcccCCCCchhhhccCCC
Q 026583 216 EEEEDDDDDDEEEQLDPR 233 (236)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~ 233 (236)
++++++++++|||..||.
T Consensus 60 eeeeeeeeeeEEE~vDPk 77 (146)
T 3cx5_F 60 DDDDDEDEEEEEEVTDQL 77 (146)
T ss_dssp -------------CCCHH
T ss_pred cccccccccccccccChH
Confidence 334444455556677774
No 110
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.31 E-value=3.3 Score=31.01 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=33.0
Q ss_pred CCCCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh--hCCcccccccCc
Q 026583 15 PETTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQE 71 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~ 71 (236)
.++...|.+|...++ | .-| .+--+.+|..||..=+.+ ++.+.|+.|...
T Consensus 22 d~n~~~C~vC~~~g~-----L-L~C--D~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGD-----L-VMC--NQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSC-----C-EEC--TTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCC-----E-EEC--CCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 346689999986531 2 223 333489999998554432 478999999843
No 111
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=43.06 E-value=1.3 Score=30.55 Aligned_cols=48 Identities=25% Similarity=0.685 Sum_probs=29.4
Q ss_pred CCCCCeeeEcccCcccCCCcccc--ccccCCCcccccHHHHHHHHHh--hCCcccccccC
Q 026583 15 PETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li~--PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~ 70 (236)
+++...| ||..... + .|+. -|.|+ ..|+|..|+. +.. +++..|+.|..
T Consensus 7 ~~e~~~C-~C~~~~~-g--~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY-G--EMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC-S--EEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC-C--CEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 3455677 8876543 2 2443 22344 2699999998 433 36889999874
No 112
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=42.26 E-value=33 Score=22.50 Aligned_cols=25 Identities=8% Similarity=0.006 Sum_probs=11.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhh
Q 026583 171 LLRACGIILPMYVLMRTITAIHNSI 195 (236)
Q Consensus 171 ~Lra~Gillp~yI~~rai~~iq~~r 195 (236)
....+|.++.+.+++-.+-.+-|||
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehHHHHHHHHHHHHHHHHhhhh
Confidence 3444554455555554444444443
No 113
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=39.52 E-value=2.8 Score=29.68 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=27.1
Q ss_pred eeeEcccCcccCCCccccccc-cCCCcccccHHHHHHHHHh--hC-CcccccccC
Q 026583 20 HCRICHEEEFESCNSLEAPCA-CSGTVKFAHRDCIQRWCYE--KG-NTTCEICLQ 70 (236)
Q Consensus 20 ~CRIC~~e~~e~~~~li~PC~-C~GSlk~vH~~CL~rWl~~--k~-~~~CeiCk~ 70 (236)
.|.+|....+.+ .+.-|. |. +.+|..||.-=+.. ++ .+.|+.|..
T Consensus 20 ~C~~C~~~~~~~---~ll~CD~C~---~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD---KQLMCDECD---MAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG---GEEECTTTC---CEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC---CEEEcCCCC---CceecccCCCCcCCCCCCCCcCCcCccC
Confidence 345665443322 234454 55 89999998743332 35 788988874
No 114
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.41 E-value=5 Score=28.42 Aligned_cols=52 Identities=19% Similarity=0.512 Sum_probs=30.7
Q ss_pred CCCCCeeeEcccCcccCCCccc--cccccCCCcccccHHHHHHHHHhhCCcccccccCcc
Q 026583 15 PETTSHCRICHEEEFESCNSLE--APCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEY 72 (236)
Q Consensus 15 s~~~~~CRIC~~e~~e~~~~li--~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y 72 (236)
+++...| ||..... + .|+ --|.|. ..|+|..|+.-=-..++...|+.|....
T Consensus 3 ~~~~~yC-~C~~~~~-g--~MI~CD~cdC~--~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 3 SGSSGYC-ICNQVSY-G--EMVGCDNQDCP--IEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CSCCCCS-TTSCCCC-S--SEECCSCTTCS--CCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCCeEE-EcCCCCC-C--CEeEeCCCCCC--ccCCcccccccCcCCCCCEECCCCCccc
Confidence 3455667 4766532 2 354 234453 3799999987211123678899998543
No 115
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=36.57 E-value=7.4 Score=35.31 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=10.8
Q ss_pred HHHHHhhhhHHHHHHH
Q 026583 170 LLLRACGIILPMYVLM 185 (236)
Q Consensus 170 ~~Lra~Gillp~yI~~ 185 (236)
|+-++|+.-+.-|-..
T Consensus 255 F~~~vA~~s~eey~~F 270 (335)
T 4fp9_B 255 FLARTACTSVEEFQVF 270 (335)
T ss_dssp HHHHTSCCCHHHHHHH
T ss_pred HHHHHHhcCHHHHHHH
Confidence 5667777777777543
No 116
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=36.50 E-value=4.9 Score=33.40 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=31.7
Q ss_pred CCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh--hCCcccccccCcc
Q 026583 18 TSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQEY 72 (236)
Q Consensus 18 ~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~~y 72 (236)
...|.+|..+++ ..-|. |--+.+|..|+..=+.. +|.+.|+.|...-
T Consensus 2 ~~~C~~C~~~g~------ll~Cd--~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGD------LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSS------CCCCT--TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCc------eeECC--CCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 467999986542 23343 33489999998644432 4789999998654
No 117
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=34.09 E-value=2.2 Score=29.62 Aligned_cols=47 Identities=19% Similarity=0.577 Sum_probs=29.2
Q ss_pred CCCCeeeEcccCcccCCCcccc--ccccCCCcccccHHHHHHHHHh--hCCcccccccC
Q 026583 16 ETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~--PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~ 70 (236)
.+...| ||..... + .|+. -|.|+ ..|+|..|+. +.. +++..|+.|..
T Consensus 9 ~e~~yC-~C~~~~~-g--~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSY-G--EMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECC-S--EEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCC-C--CeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 455677 8876532 2 3543 23354 2799999987 332 36789999974
No 118
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=33.69 E-value=2.8 Score=30.38 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=17.4
Q ss_pred ccccHHHHHHHHHh--hCC-cccccccC
Q 026583 46 KFAHRDCIQRWCYE--KGN-TTCEICLQ 70 (236)
Q Consensus 46 k~vH~~CL~rWl~~--k~~-~~CeiCk~ 70 (236)
+.+|..||.--+.. ++. +.|+.|+.
T Consensus 49 ~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 49 MAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp CEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CccCcccCCCcccCCCCCCceECcCccc
Confidence 88999998755543 244 78888874
No 119
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=33.13 E-value=7.5 Score=25.61 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=28.9
Q ss_pred eeeEcccCcccCCCcccccc-ccCCCcccccHHHHHHHHH--hhCCccccccc
Q 026583 20 HCRICHEEEFESCNSLEAPC-ACSGTVKFAHRDCIQRWCY--EKGNTTCEICL 69 (236)
Q Consensus 20 ~CRIC~~e~~e~~~~li~PC-~C~GSlk~vH~~CL~rWl~--~k~~~~CeiCk 69 (236)
.|-+|...+.++ ..|+.=- .|. .|+|..|+.-=.. ......|+.|+
T Consensus 4 ~cc~C~~p~~~~-~~mI~Cd~~C~---~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDK-VDWVQCDGGCD---EWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTT-CCEEECTTTTC---CEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCC-CcEEEeCCCCC---ccCcccccCCCccccCCCCEECCCCC
Confidence 567887776543 3466522 366 9999999753322 23678888884
No 120
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=32.96 E-value=3.9 Score=30.60 Aligned_cols=47 Identities=21% Similarity=0.592 Sum_probs=30.3
Q ss_pred CCCCeeeEcccCcccCCCccc--cccccCCCcccccHHHHHHHHHh--hCCccccc-ccC
Q 026583 16 ETTSHCRICHEEEFESCNSLE--APCACSGTVKFAHRDCIQRWCYE--KGNTTCEI-CLQ 70 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li--~PC~C~GSlk~vH~~CL~rWl~~--k~~~~Cei-Ck~ 70 (236)
.+...| ||..... + .|+ --|.|. ..|+|..|+. +.. ++.+.|+. |..
T Consensus 24 ~~~~yC-iC~~~~~-g--~MI~CD~c~C~--~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-G--PMVACDNPACP--FEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-S--SEECCCSSSCS--CSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-C--CEEEecCCCCc--cccCcCccCC--CCcCCCCCccCChhhcc
Confidence 355678 8976543 2 254 334455 2799999986 322 36899999 874
No 121
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=30.54 E-value=29 Score=30.40 Aligned_cols=10 Identities=0% Similarity=-0.114 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 026583 183 VLMRTITAIH 192 (236)
Q Consensus 183 I~~rai~~iq 192 (236)
|+-+++.+..
T Consensus 208 I~P~al~yf~ 217 (264)
T 2zd7_A 208 IYPFCVKYYA 217 (264)
T ss_dssp HHHHHHHHHH
T ss_pred hccCHHHHhc
Confidence 3445555554
No 122
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=29.38 E-value=11 Score=28.03 Aligned_cols=47 Identities=23% Similarity=0.402 Sum_probs=28.6
Q ss_pred CCCeeeEcccCcccCCCccccccccCCCcccccHHHHHHHHH-hhCCccccccc
Q 026583 17 TTSHCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCY-EKGNTTCEICL 69 (236)
Q Consensus 17 ~~~~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~-~k~~~~CeiCk 69 (236)
+...| ||....+++ .|+.==.|. .|+|..|+.-=.. ......|+.|+
T Consensus 27 d~vrC-iC~~~~~~~--~mi~Cd~C~---~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG--YMICCDKCS---VWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CBCCC-TTSCCSCSS--CEEEBTTTC---BEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CCEEe-ECCCccCCC--cEEEcCCCC---CcCcCcCCCCCccCCCCCEECCCCc
Confidence 34567 886655433 354322355 8999999853111 12468999997
No 123
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=29.37 E-value=45 Score=21.74 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 026583 176 GIILPMYVLMRTITAIHNS 194 (236)
Q Consensus 176 Gillp~yI~~rai~~iq~~ 194 (236)
|.++.+.+++-++-.+-||
T Consensus 19 gGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 19 GALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3333333444333333444
No 124
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.14 E-value=13 Score=26.37 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=22.4
Q ss_pred cccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCC
Q 026583 35 LEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (236)
Q Consensus 35 li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~ 75 (236)
+.-| .|+|.+.+.- .++...|+-|+..|++.
T Consensus 11 L~CP-~ck~~L~~~~---------~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 11 LACP-KDKGPLRYLE---------SEQLLVNERLNLAYRID 41 (67)
T ss_dssp CBCT-TTCCBCEEET---------TTTEEEETTTTEEEEEE
T ss_pred hCCC-CCCCcCeEeC---------CCCEEEcCCCCccccCC
Confidence 4556 6888877642 35678999999998754
No 125
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=26.20 E-value=7.6 Score=28.51 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=15.3
Q ss_pred CCcccccccCcccCCccCCC
Q 026583 61 GNTTCEICLQEYGPGYTAPS 80 (236)
Q Consensus 61 ~~~~CeiCk~~y~~~y~~~p 80 (236)
....|+.|++.|+..+..++
T Consensus 55 ~~~RC~eCG~~fkL~~vg~~ 74 (80)
T 2odx_A 55 EVARCWECGSVYKLNPVGVP 74 (80)
T ss_dssp CEEECSSSCCEEEECCCC--
T ss_pred CCeECCCCCeEEEEEEcCCC
Confidence 34699999999998887665
No 126
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=25.23 E-value=15 Score=34.54 Aligned_cols=9 Identities=11% Similarity=0.220 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 026583 184 LMRTITAIH 192 (236)
Q Consensus 184 ~~rai~~iq 192 (236)
+=+||.|+.
T Consensus 353 iP~AV~yft 361 (417)
T 2ayu_A 353 IPRAVDWFT 361 (417)
T ss_dssp TTTHHHHHH
T ss_pred cccHHHHhc
Confidence 445555555
No 127
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=24.91 E-value=4.5 Score=27.66 Aligned_cols=47 Identities=23% Similarity=0.624 Sum_probs=28.9
Q ss_pred CCCCeeeEcccCcccCCCcccc--ccccCCCcccccHHHHHHHHHh--hCCcccccccC
Q 026583 16 ETTSHCRICHEEEFESCNSLEA--PCACSGTVKFAHRDCIQRWCYE--KGNTTCEICLQ 70 (236)
Q Consensus 16 ~~~~~CRIC~~e~~e~~~~li~--PC~C~GSlk~vH~~CL~rWl~~--k~~~~CeiCk~ 70 (236)
++...| ||..... + .|+. -|.|+. .|+|..|+. +.. +++..|+.|..
T Consensus 7 ~e~~yC-~C~~~~~-g--~mi~CD~~~C~~--~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-G--EMIGCDNPDCPI--EWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-S--EEEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-C--CeeEeeCCCCCC--CCEecccCC--cccCCCCCEECcCccC
Confidence 355667 8876542 2 3543 223541 699999987 433 36789999874
No 128
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.68 E-value=16 Score=25.96 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=21.8
Q ss_pred cccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCC
Q 026583 35 LEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (236)
Q Consensus 35 li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~ 75 (236)
+.-| .|+|.+.+.- .++...|+-|+..|++.
T Consensus 9 L~CP-~ck~~L~~~~---------~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 9 LACP-ICKGPLKLSA---------DKTELISKGAGLAYPIR 39 (69)
T ss_dssp CCCT-TTCCCCEECT---------TSSEEEETTTTEEEEEE
T ss_pred eeCC-CCCCcCeEeC---------CCCEEEcCCCCcEecCc
Confidence 4455 6888877631 25678999999999754
No 129
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=21.98 E-value=9.6 Score=33.10 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=24.8
Q ss_pred eeeEcccCcccCCCccccccccCCCcccccHHHHHHHHHh--hC-CcccccccC
Q 026583 20 HCRICHEEEFESCNSLEAPCACSGTVKFAHRDCIQRWCYE--KG-NTTCEICLQ 70 (236)
Q Consensus 20 ~CRIC~~e~~e~~~~li~PC~C~GSlk~vH~~CL~rWl~~--k~-~~~CeiCk~ 70 (236)
.|.+|......+ ...-|. |--+.+|..||.-=+.. +| .+.|+.|..
T Consensus 176 ~C~vC~~~~~~~---~lL~CD--~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPD---KQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC-----CCEECS--SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCC---CeEEcC--CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 366665543322 233443 33389999998744432 35 789999974
No 130
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.97 E-value=42 Score=24.14 Aligned_cols=16 Identities=6% Similarity=-0.004 Sum_probs=11.1
Q ss_pred HHHHhhhhhhhccccc
Q 026583 189 TAIHNSIRREYHHVTY 204 (236)
Q Consensus 189 ~~iq~~rrrq~~~q~~ 204 (236)
-|+|++|.+|+.+|.+
T Consensus 51 VWFqNrRa~~~~~~~~ 66 (71)
T 2da7_A 51 EWFEQRKVYQYSNSRS 66 (71)
T ss_dssp HHHHHHHHHHHSCSSS
T ss_pred HHHhhccccccCCCCC
Confidence 4789998777755543
No 131
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=21.77 E-value=32 Score=17.28 Aligned_cols=11 Identities=18% Similarity=0.724 Sum_probs=8.7
Q ss_pred cccccccCccc
Q 026583 63 TTCEICLQEYG 73 (236)
Q Consensus 63 ~~CeiCk~~y~ 73 (236)
..|++|+..|.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 36999998875
No 132
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.53 E-value=21 Score=25.21 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=21.5
Q ss_pred cccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCC
Q 026583 35 LEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (236)
Q Consensus 35 li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~ 75 (236)
+.-| .|+|.+.+.- .++...|+-|+..|++.
T Consensus 9 L~CP-~ck~~L~~~~---------~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 9 LVCP-VTKGRLEYHQ---------DKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CBCS-SSCCBCEEET---------TTTEEEETTTTEEEEEE
T ss_pred eECC-CCCCcCeEeC---------CCCEEEcCCCCcEecCC
Confidence 4555 5888777632 24678999999998753
No 133
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.16 E-value=18 Score=25.77 Aligned_cols=31 Identities=19% Similarity=0.491 Sum_probs=22.0
Q ss_pred cccccccCCCcccccHHHHHHHHHhhCCcccccccCcccCC
Q 026583 35 LEAPCACSGTVKFAHRDCIQRWCYEKGNTTCEICLQEYGPG 75 (236)
Q Consensus 35 li~PC~C~GSlk~vH~~CL~rWl~~k~~~~CeiCk~~y~~~ 75 (236)
+.-| .|+|.+.+.- .++...|+-|+..|++.
T Consensus 9 L~CP-~ck~~L~~~~---------~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 9 LVCP-VCKGRLEFQR---------AQAELVCNADRLAFPVR 39 (70)
T ss_dssp CBCT-TTCCBEEEET---------TTTEEEETTTTEEEEEE
T ss_pred eECC-CCCCcCEEeC---------CCCEEEcCCCCceecCC
Confidence 4555 6888777632 24678999999999754
No 134
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=20.94 E-value=76 Score=29.38 Aligned_cols=38 Identities=13% Similarity=0.359 Sum_probs=27.4
Q ss_pred CccccccccCCCcccccHHHH--HHHHH---hhCCcccccccCccc
Q 026583 33 NSLEAPCACSGTVKFAHRDCI--QRWCY---EKGNTTCEICLQEYG 73 (236)
Q Consensus 33 ~~li~PC~C~GSlk~vH~~CL--~rWl~---~k~~~~CeiCk~~y~ 73 (236)
..+..||+-+ +..|-.|+ ..|+. .++.+.||+|++.+.
T Consensus 257 ~ri~~PvRg~---~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 257 TRMKYPSKSI---NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCSSEEEET---TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ccccccCcCC---cCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4578898855 66787775 33553 357999999998764
No 135
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.03 E-value=35 Score=17.26 Aligned_cols=11 Identities=27% Similarity=1.008 Sum_probs=9.0
Q ss_pred cccccccCccc
Q 026583 63 TTCEICLQEYG 73 (236)
Q Consensus 63 ~~CeiCk~~y~ 73 (236)
..|++|+..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 47999998875
Done!