Query 026584
Match_columns 236
No_of_seqs 112 out of 722
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1534 Putative transcription 100.0 9.8E-78 2.1E-82 512.3 17.0 232 1-235 34-269 (273)
2 KOG1533 Predicted GTPase [Gene 100.0 2.5E-74 5.4E-79 497.7 18.5 217 1-219 33-255 (290)
3 PF03029 ATP_bind_1: Conserved 100.0 1E-67 2.2E-72 463.6 14.2 210 1-218 27-238 (238)
4 KOG1532 GTPase XAB1, interacts 100.0 4.6E-49 9.9E-54 347.4 18.4 214 1-218 50-265 (366)
5 PRK13768 GTPase; Provisional 100.0 4.8E-38 1E-42 277.7 20.7 217 1-222 33-252 (253)
6 COG1159 Era GTPase [General fu 99.0 5.1E-09 1.1E-13 94.4 12.5 153 38-227 15-182 (298)
7 TIGR00436 era GTP-binding prot 98.9 1.8E-08 3.8E-13 89.6 11.6 150 38-224 9-171 (270)
8 PF00009 GTP_EFTU: Elongation 98.8 1E-07 2.2E-12 79.8 13.6 115 68-217 71-187 (188)
9 cd01898 Obg Obg subfamily. Th 98.7 3.2E-07 6.9E-12 74.1 12.0 118 68-215 49-169 (170)
10 cd01879 FeoB Ferrous iron tran 98.7 3.1E-07 6.8E-12 73.0 10.8 113 67-215 43-155 (158)
11 PF02421 FeoB_N: Ferrous iron 98.7 1.1E-07 2.5E-12 78.7 8.5 131 38-212 9-156 (156)
12 TIGR02729 Obg_CgtA Obg family 98.6 4.2E-07 9.2E-12 83.5 12.6 148 38-216 166-328 (329)
13 PRK12298 obgE GTPase CgtA; Rev 98.6 6.9E-07 1.5E-11 84.0 13.2 151 38-219 168-335 (390)
14 COG2895 CysN GTPases - Sulfate 98.6 1E-07 2.2E-12 87.9 7.3 101 66-206 85-192 (431)
15 cd01884 EF_Tu EF-Tu subfamily. 98.6 1.3E-06 2.9E-11 74.4 13.5 112 67-215 65-191 (195)
16 PRK00089 era GTPase Era; Revie 98.6 1E-06 2.3E-11 78.7 12.6 148 38-222 14-176 (292)
17 cd01889 SelB_euk SelB subfamil 98.6 1.9E-06 4E-11 72.2 13.3 116 67-216 68-185 (192)
18 cd04163 Era Era subfamily. Er 98.5 1.5E-06 3.2E-11 68.6 11.1 115 67-215 51-167 (168)
19 cd00880 Era_like Era (E. coli 98.5 3.9E-06 8.4E-11 65.1 12.9 118 67-215 45-162 (163)
20 cd04171 SelB SelB subfamily. 98.5 2.7E-06 5.9E-11 67.8 12.3 109 68-214 52-163 (164)
21 cd01888 eIF2_gamma eIF2-gamma 98.5 3.7E-06 8.1E-11 71.5 13.3 115 67-219 83-201 (203)
22 cd01881 Obg_like The Obg-like 98.5 1.9E-06 4.2E-11 69.6 10.7 117 67-213 44-173 (176)
23 PRK12299 obgE GTPase CgtA; Rev 98.4 5.1E-06 1.1E-10 76.7 13.5 150 38-218 167-329 (335)
24 cd01895 EngA2 EngA2 subfamily. 98.4 7.8E-06 1.7E-10 65.2 12.8 120 67-215 50-173 (174)
25 cd00157 Rho Rho (Ras homology) 98.4 2.2E-06 4.8E-11 69.1 9.5 119 68-214 49-170 (171)
26 cd04160 Arfrp1 Arfrp1 subfamil 98.4 4.2E-06 9E-11 67.5 10.9 109 67-213 50-165 (167)
27 PRK12297 obgE GTPase CgtA; Rev 98.4 4.6E-06 1E-10 79.3 12.4 147 38-219 167-329 (424)
28 cd01864 Rab19 Rab19 subfamily. 98.4 6.3E-06 1.4E-10 66.6 11.6 110 68-215 53-164 (165)
29 TIGR00437 feoB ferrous iron tr 98.4 2.1E-06 4.6E-11 84.7 10.1 147 38-220 3-158 (591)
30 PRK15467 ethanolamine utilizat 98.4 3.1E-06 6.7E-11 69.3 9.4 136 38-218 10-148 (158)
31 cd00881 GTP_translation_factor 98.3 1.7E-05 3.7E-10 64.6 13.3 124 68-216 63-186 (189)
32 COG1100 GTPase SAR1 and relate 98.3 4.6E-09 1E-13 88.9 -8.2 137 2-146 37-182 (219)
33 PRK15494 era GTPase Era; Provi 98.3 1.1E-05 2.4E-10 74.4 13.4 150 38-226 61-225 (339)
34 cd01887 IF2_eIF5B IF2/eIF5B (i 98.3 1.3E-05 2.9E-10 64.3 12.5 115 67-216 50-165 (168)
35 CHL00071 tufA elongation facto 98.3 9.8E-06 2.1E-10 76.4 12.9 112 67-216 75-210 (409)
36 TIGR03594 GTPase_EngA ribosome 98.3 1.1E-05 2.4E-10 75.7 13.2 120 67-217 220-344 (429)
37 cd01894 EngA1 EngA1 subfamily. 98.3 9.5E-06 2.1E-10 64.1 10.9 109 67-214 45-155 (157)
38 cd04165 GTPBP1_like GTPBP1-lik 98.3 1.8E-05 3.9E-10 68.9 13.4 131 66-214 83-220 (224)
39 PRK12735 elongation factor Tu; 98.3 1.1E-05 2.4E-10 75.7 12.5 114 67-217 75-203 (396)
40 cd01897 NOG NOG1 is a nucleola 98.3 1.4E-05 3.1E-10 64.3 11.6 116 68-216 48-167 (168)
41 PRK12296 obgE GTPase CgtA; Rev 98.3 1E-05 2.2E-10 78.3 12.2 150 38-218 168-341 (500)
42 PRK12736 elongation factor Tu; 98.2 1.9E-05 4.2E-10 74.1 13.4 114 67-217 75-201 (394)
43 cd01890 LepA LepA subfamily. 98.2 3.5E-05 7.6E-10 62.8 13.3 108 69-216 69-176 (179)
44 smart00174 RHO Rho (Ras homolo 98.2 1E-05 2.2E-10 65.8 9.7 121 68-215 47-170 (174)
45 PTZ00327 eukaryotic translatio 98.2 1.9E-05 4.1E-10 75.8 12.9 115 68-218 118-234 (460)
46 cd04130 Wrch_1 Wrch-1 subfamil 98.2 9.8E-06 2.1E-10 66.3 9.5 118 68-212 49-169 (173)
47 cd04112 Rab26 Rab26 subfamily. 98.2 1.9E-05 4.2E-10 66.0 11.4 114 68-218 51-164 (191)
48 TIGR00491 aIF-2 translation in 98.2 2.4E-05 5.3E-10 77.2 13.7 134 68-216 70-215 (590)
49 PRK00049 elongation factor Tu; 98.2 2.4E-05 5.2E-10 73.5 12.7 114 67-217 75-203 (396)
50 PRK10512 selenocysteinyl-tRNA- 98.2 2.4E-05 5.2E-10 77.6 13.0 113 68-218 52-167 (614)
51 cd00878 Arf_Arl Arf (ADP-ribos 98.2 2.1E-05 4.6E-10 62.8 10.4 113 68-213 44-156 (158)
52 PRK00454 engB GTP-binding prot 98.2 5.9E-05 1.3E-09 62.5 13.2 119 67-217 70-194 (196)
53 PRK09866 hypothetical protein; 98.2 2.7E-05 5.8E-10 77.3 12.6 115 66-214 229-350 (741)
54 cd04145 M_R_Ras_like M-Ras/R-R 98.1 3.7E-05 8E-10 61.5 11.2 109 69-216 52-163 (164)
55 PLN03127 Elongation factor Tu; 98.1 4.7E-05 1E-09 72.8 13.7 113 67-217 124-252 (447)
56 cd04164 trmE TrmE (MnmE, ThdF, 98.1 3.4E-05 7.3E-10 60.8 10.4 105 68-216 50-156 (157)
57 PRK00093 GTP-binding protein D 98.1 3.9E-05 8.4E-10 72.3 12.5 118 67-216 221-343 (435)
58 TIGR00485 EF-Tu translation el 98.1 4.3E-05 9.3E-10 71.7 12.6 112 68-216 76-200 (394)
59 smart00173 RAS Ras subfamily o 98.1 2.5E-05 5.5E-10 62.7 9.5 110 69-215 50-160 (164)
60 cd01883 EF1_alpha Eukaryotic e 98.1 2.4E-05 5.2E-10 67.4 9.8 106 67-206 77-194 (219)
61 cd04166 CysN_ATPS CysN_ATPS su 98.1 4.6E-05 1E-09 65.0 11.4 106 67-208 77-185 (208)
62 cd01860 Rab5_related Rab5-rela 98.1 7.8E-05 1.7E-09 59.6 12.0 110 68-216 51-162 (163)
63 TIGR00475 selB selenocysteine- 98.1 5.6E-05 1.2E-09 74.6 13.3 114 68-219 51-168 (581)
64 cd04151 Arl1 Arl1 subfamily. 98.1 5.7E-05 1.2E-09 60.7 11.1 110 67-213 43-156 (158)
65 COG5256 TEF1 Translation elong 98.1 2.8E-05 6.2E-10 73.1 10.0 105 68-208 86-202 (428)
66 cd01893 Miro1 Miro1 subfamily. 98.0 6.3E-05 1.4E-09 61.1 11.0 113 68-216 48-163 (166)
67 TIGR00231 small_GTP small GTP- 98.0 4.9E-05 1.1E-09 58.8 9.9 109 68-213 51-160 (161)
68 TIGR02528 EutP ethanolamine ut 98.0 2.5E-05 5.3E-10 61.6 8.2 103 70-212 38-140 (142)
69 cd01862 Rab7 Rab7 subfamily. 98.0 4.2E-05 9.1E-10 61.6 9.6 112 69-215 51-165 (172)
70 COG0218 Predicted GTPase [Gene 98.0 0.00018 3.8E-09 61.9 13.7 147 38-218 33-198 (200)
71 PF10662 PduV-EutP: Ethanolami 98.0 3.6E-05 7.8E-10 63.0 9.0 101 70-213 39-142 (143)
72 cd01878 HflX HflX subfamily. 98.0 7.6E-05 1.7E-09 62.7 11.4 114 68-216 90-204 (204)
73 cd04139 RalA_RalB RalA/RalB su 98.0 1.7E-05 3.6E-10 63.3 6.8 109 68-215 49-160 (164)
74 TIGR03680 eif2g_arch translati 98.0 0.00011 2.4E-09 69.3 13.4 112 68-217 81-196 (406)
75 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.0 0.00011 2.3E-09 61.2 11.7 114 68-216 53-169 (183)
76 PRK03003 GTP-binding protein D 98.0 0.00011 2.3E-09 70.6 13.2 149 38-217 220-382 (472)
77 cd01861 Rab6 Rab6 subfamily. 98.0 0.00012 2.5E-09 58.5 11.5 111 68-215 50-160 (161)
78 PTZ00141 elongation factor 1- 98.0 5.7E-05 1.2E-09 72.2 11.1 115 67-215 85-223 (446)
79 PRK14845 translation initiatio 98.0 9.5E-05 2.1E-09 77.1 13.4 131 69-217 528-673 (1049)
80 TIGR02034 CysN sulfate adenyly 98.0 7.6E-05 1.6E-09 70.4 11.6 113 67-215 80-207 (406)
81 cd01876 YihA_EngB The YihA (En 98.0 0.00026 5.6E-09 55.9 12.9 118 68-215 46-169 (170)
82 cd01871 Rac1_like Rac1-like su 98.0 4.9E-05 1.1E-09 62.9 8.8 121 68-215 50-173 (174)
83 cd04136 Rap_like Rap-like subf 98.0 7.3E-05 1.6E-09 59.7 9.6 108 69-215 51-161 (163)
84 TIGR03598 GTPase_YsxC ribosome 98.0 8.8E-05 1.9E-09 61.3 10.4 109 67-206 64-179 (179)
85 cd04107 Rab32_Rab38 Rab38/Rab3 98.0 0.00019 4.2E-09 60.4 12.6 111 68-216 51-167 (201)
86 cd00154 Rab Rab family. Rab G 98.0 0.00024 5.2E-09 55.4 12.3 109 68-213 50-158 (159)
87 cd04175 Rap1 Rap1 subgroup. T 97.9 0.0001 2.3E-09 59.3 10.4 110 69-215 51-161 (164)
88 PRK12317 elongation factor 1-a 97.9 5.7E-05 1.2E-09 71.4 10.0 113 67-215 84-215 (425)
89 cd00882 Ras_like_GTPase Ras-li 97.9 8.1E-05 1.8E-09 56.6 9.1 111 68-213 46-156 (157)
90 cd01891 TypA_BipA TypA (tyrosi 97.9 0.00016 3.5E-09 60.5 11.7 66 68-147 66-131 (194)
91 cd04159 Arl10_like Arl10-like 97.9 0.00018 3.9E-09 56.3 11.2 111 68-214 45-158 (159)
92 PRK09518 bifunctional cytidyla 97.9 0.00016 3.5E-09 72.8 13.6 148 38-217 459-621 (712)
93 PRK04000 translation initiatio 97.9 0.0002 4.2E-09 67.8 13.4 112 68-217 86-201 (411)
94 PLN00043 elongation factor 1-a 97.9 7.9E-05 1.7E-09 71.3 10.7 114 68-215 86-223 (447)
95 TIGR03156 GTP_HflX GTP-binding 97.9 0.00012 2.6E-09 67.9 11.6 140 38-215 198-350 (351)
96 cd04132 Rho4_like Rho4-like su 97.9 0.00019 4E-09 59.2 11.4 116 68-218 50-168 (187)
97 PRK05124 cysN sulfate adenylyl 97.9 0.00012 2.6E-09 70.5 11.7 105 67-208 107-216 (474)
98 cd00876 Ras Ras family. The R 97.9 0.00016 3.5E-09 57.1 10.4 109 68-215 48-159 (160)
99 cd04156 ARLTS1 ARLTS1 subfamil 97.9 0.00027 5.9E-09 56.4 11.8 110 68-213 45-158 (160)
100 PRK04213 GTP-binding protein; 97.9 0.00017 3.7E-09 60.4 10.9 125 68-216 53-191 (201)
101 cd04127 Rab27A Rab27a subfamil 97.9 0.00027 5.8E-09 57.8 11.8 108 68-214 64-174 (180)
102 PRK11058 GTPase HflX; Provisio 97.9 0.00011 2.5E-09 69.9 10.8 144 38-216 206-361 (426)
103 cd04154 Arl2 Arl2 subfamily. 97.9 0.00023 4.9E-09 58.2 11.2 108 68-212 59-170 (173)
104 PRK05506 bifunctional sulfate 97.9 0.00016 3.5E-09 71.9 12.1 112 67-215 104-231 (632)
105 PRK09554 feoB ferrous iron tra 97.9 0.00014 3E-09 74.0 11.8 144 38-217 12-168 (772)
106 smart00177 ARF ARF-like small 97.8 0.00032 6.8E-09 57.9 11.8 113 68-216 58-173 (175)
107 PLN03126 Elongation factor Tu; 97.8 0.00038 8.3E-09 67.2 13.7 113 66-215 143-278 (478)
108 cd04157 Arl6 Arl6 subfamily. 97.8 0.00026 5.5E-09 56.4 10.7 110 68-213 46-160 (162)
109 cd04101 RabL4 RabL4 (Rab-like4 97.8 0.00026 5.6E-09 56.7 10.7 108 68-215 53-162 (164)
110 COG1160 Predicted GTPases [Gen 97.8 0.00013 2.8E-09 69.4 9.9 139 38-217 12-165 (444)
111 cd01870 RhoA_like RhoA-like su 97.8 0.00013 2.9E-09 59.1 8.8 124 68-215 50-173 (175)
112 cd04150 Arf1_5_like Arf1-Arf5- 97.8 0.0004 8.7E-09 56.3 11.6 111 67-213 44-157 (159)
113 cd04155 Arl3 Arl3 subfamily. 97.8 0.00053 1.2E-08 55.5 12.3 114 67-214 58-172 (173)
114 cd04116 Rab9 Rab9 subfamily. 97.8 0.00021 4.4E-09 57.9 9.6 56 132-214 113-168 (170)
115 cd04105 SR_beta Signal recogni 97.8 0.0004 8.7E-09 59.2 11.8 74 67-148 48-124 (203)
116 cd04138 H_N_K_Ras_like H-Ras/N 97.8 0.00047 1E-08 54.5 11.4 108 69-215 51-160 (162)
117 cd04137 RheB Rheb (Ras Homolog 97.8 0.00022 4.8E-09 58.3 9.6 112 69-217 51-163 (180)
118 cd01867 Rab8_Rab10_Rab13_like 97.8 0.00049 1.1E-08 55.8 11.5 110 68-216 53-164 (167)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.8 0.00037 8.1E-09 57.2 10.9 111 67-213 59-172 (174)
120 KOG1423 Ras-like GTPase ERA [C 97.8 0.00021 4.6E-09 65.3 9.9 162 38-220 81-274 (379)
121 cd04113 Rab4 Rab4 subfamily. 97.7 0.00045 9.7E-09 55.3 11.0 109 69-214 51-159 (161)
122 smart00175 RAB Rab subfamily o 97.7 0.00042 9.1E-09 55.2 10.7 109 69-216 51-161 (164)
123 cd04134 Rho3 Rho3 subfamily. 97.7 0.00017 3.7E-09 60.2 8.6 123 68-217 49-174 (189)
124 cd04158 ARD1 ARD1 subfamily. 97.7 0.00063 1.4E-08 55.5 11.8 118 68-222 44-166 (169)
125 cd04149 Arf6 Arf6 subfamily. 97.7 0.00049 1.1E-08 56.5 11.0 106 68-213 54-166 (168)
126 cd04119 RJL RJL (RabJ-Like) su 97.7 0.00051 1.1E-08 54.7 10.9 111 68-215 50-165 (168)
127 cd04114 Rab30 Rab30 subfamily. 97.7 0.00053 1.2E-08 55.2 11.1 107 69-214 58-166 (169)
128 PRK04004 translation initiatio 97.7 0.00031 6.8E-09 69.4 11.5 128 69-214 73-215 (586)
129 TIGR00483 EF-1_alpha translati 97.7 0.00033 7.1E-09 66.3 11.1 113 67-215 85-217 (426)
130 cd01886 EF-G Elongation factor 97.7 0.0013 2.8E-08 58.9 14.2 66 67-147 64-130 (270)
131 cd04135 Tc10 TC10 subfamily. 97.7 0.00035 7.6E-09 56.6 9.7 118 70-215 51-172 (174)
132 TIGR00487 IF-2 translation ini 97.7 0.00031 6.7E-09 69.5 11.0 111 68-214 136-247 (587)
133 cd04170 EF-G_bact Elongation f 97.7 0.0018 3.9E-08 57.3 14.8 42 176-217 225-266 (268)
134 cd04122 Rab14 Rab14 subfamily. 97.7 0.00082 1.8E-08 54.3 11.6 108 68-214 52-161 (166)
135 cd04123 Rab21 Rab21 subfamily. 97.7 0.00034 7.5E-09 55.3 9.2 109 68-215 50-160 (162)
136 PRK00093 GTP-binding protein D 97.7 0.00039 8.4E-09 65.5 11.0 136 38-214 10-159 (435)
137 cd01874 Cdc42 Cdc42 subfamily. 97.7 0.00035 7.5E-09 57.8 9.4 120 69-215 51-173 (175)
138 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.7 0.00095 2.1E-08 53.7 11.8 110 68-216 52-163 (166)
139 TIGR01393 lepA GTP-binding pro 97.7 0.00082 1.8E-08 66.6 13.4 110 68-217 71-180 (595)
140 cd04168 TetM_like Tet(M)-like 97.6 0.0022 4.8E-08 56.2 14.6 134 67-217 64-235 (237)
141 cd04142 RRP22 RRP22 subfamily. 97.6 0.00057 1.2E-08 58.0 10.6 121 69-222 51-180 (198)
142 cd04176 Rap2 Rap2 subgroup. T 97.6 0.00061 1.3E-08 54.6 10.2 109 69-216 51-162 (163)
143 cd01865 Rab3 Rab3 subfamily. 97.6 0.00092 2E-08 54.1 11.3 109 68-215 51-161 (165)
144 cd01868 Rab11_like Rab11-like. 97.6 0.0009 2E-08 53.7 11.0 109 68-215 53-163 (165)
145 cd04140 ARHI_like ARHI subfami 97.6 0.0011 2.4E-08 53.6 11.3 107 68-213 50-161 (165)
146 PTZ00099 rab6; Provisional 97.6 0.00066 1.4E-08 56.7 10.2 112 68-218 30-143 (176)
147 cd01882 BMS1 Bms1. Bms1 is an 97.6 0.0016 3.5E-08 56.5 12.9 113 66-216 82-200 (225)
148 KOG1144 Translation initiation 97.6 0.0008 1.7E-08 67.6 12.1 127 67-213 540-683 (1064)
149 cd04177 RSR1 RSR1 subgroup. R 97.6 0.00065 1.4E-08 55.1 9.9 108 69-214 51-161 (168)
150 cd01866 Rab2 Rab2 subfamily. 97.6 0.0023 5E-08 51.9 13.0 109 68-215 54-164 (168)
151 cd01892 Miro2 Miro2 subfamily. 97.6 0.00063 1.4E-08 55.8 9.7 111 69-217 56-166 (169)
152 cd01863 Rab18 Rab18 subfamily. 97.6 0.0014 2.9E-08 52.4 11.2 109 68-214 50-159 (161)
153 PLN00223 ADP-ribosylation fact 97.6 0.0013 2.7E-08 54.8 11.3 110 68-216 62-177 (181)
154 TIGR03594 GTPase_EngA ribosome 97.5 0.0011 2.4E-08 62.2 11.9 140 38-218 8-161 (429)
155 cd04144 Ras2 Ras2 subfamily. 97.5 0.00069 1.5E-08 56.5 9.4 109 69-216 49-162 (190)
156 cd04128 Spg1 Spg1p. Spg1p (se 97.5 0.0021 4.5E-08 53.7 12.2 113 69-216 51-165 (182)
157 PLN03118 Rab family protein; P 97.5 0.0015 3.3E-08 55.4 11.6 111 68-217 63-177 (211)
158 smart00178 SAR Sar1p-like memb 97.5 0.0021 4.6E-08 53.4 12.1 115 68-214 62-182 (184)
159 cd00879 Sar1 Sar1 subfamily. 97.5 0.00074 1.6E-08 55.8 9.2 118 68-214 64-188 (190)
160 PRK05433 GTP-binding protein L 97.5 0.0021 4.5E-08 63.8 13.8 110 69-218 76-185 (600)
161 PRK05291 trmE tRNA modificatio 97.5 0.00051 1.1E-08 65.8 9.2 132 38-217 224-370 (449)
162 cd04124 RabL2 RabL2 subfamily. 97.5 0.0024 5.3E-08 51.5 11.6 103 69-214 51-155 (161)
163 PTZ00133 ADP-ribosylation fact 97.4 0.0039 8.4E-08 51.9 12.8 112 68-215 62-176 (182)
164 cd04147 Ras_dva Ras-dva subfam 97.4 0.0019 4.2E-08 54.2 11.0 113 68-217 48-163 (198)
165 COG0532 InfB Translation initi 97.4 0.0016 3.5E-08 63.0 11.7 109 68-214 56-167 (509)
166 cd04106 Rab23_lke Rab23-like s 97.4 0.0023 4.9E-08 51.0 10.9 107 68-214 52-160 (162)
167 COG0050 TufB GTPases - transla 97.4 0.00073 1.6E-08 61.7 8.6 77 66-157 74-151 (394)
168 CHL00189 infB translation init 97.4 0.0019 4.1E-08 65.5 12.4 113 67-215 295-408 (742)
169 cd01875 RhoG RhoG subfamily. 97.4 0.0017 3.7E-08 54.4 10.2 124 69-218 53-178 (191)
170 COG0536 Obg Predicted GTPase [ 97.4 0.0025 5.3E-08 59.1 11.8 148 38-219 168-335 (369)
171 cd04115 Rab33B_Rab33A Rab33B/R 97.4 0.00091 2E-08 54.4 8.2 109 68-214 52-166 (170)
172 cd00877 Ran Ran (Ras-related n 97.4 0.0033 7.2E-08 51.2 11.5 106 69-216 51-158 (166)
173 COG1160 Predicted GTPases [Gen 97.4 0.0039 8.4E-08 59.5 13.2 144 38-217 187-351 (444)
174 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.4 0.0024 5.1E-08 52.5 10.5 107 69-214 52-161 (172)
175 COG0370 FeoB Fe2+ transport sy 97.4 0.002 4.3E-08 64.1 11.5 138 38-214 12-161 (653)
176 cd04161 Arl2l1_Arl13_like Arl2 97.4 0.0038 8.2E-08 50.9 11.5 114 68-213 44-165 (167)
177 cd01852 AIG1 AIG1 (avrRpt2-ind 97.3 0.0039 8.4E-08 52.4 11.6 129 67-218 49-185 (196)
178 cd04146 RERG_RasL11_like RERG/ 97.3 0.0024 5.2E-08 51.4 10.0 109 69-215 49-162 (165)
179 PLN03110 Rab GTPase; Provision 97.3 0.0026 5.7E-08 54.5 10.5 110 68-216 62-173 (216)
180 cd04110 Rab35 Rab35 subfamily. 97.3 0.0044 9.4E-08 52.2 11.5 108 69-216 57-166 (199)
181 cd01896 DRG The developmentall 97.3 0.0022 4.7E-08 56.0 9.8 147 67-218 47-227 (233)
182 cd04148 RGK RGK subfamily. Th 97.3 0.0029 6.3E-08 54.5 10.5 110 68-217 51-163 (221)
183 cd04118 Rab24 Rab24 subfamily. 97.3 0.0026 5.5E-08 52.8 9.8 111 70-216 53-165 (193)
184 PRK03003 GTP-binding protein D 97.2 0.0025 5.4E-08 61.3 10.6 138 38-217 47-199 (472)
185 cd04109 Rab28 Rab28 subfamily. 97.2 0.0051 1.1E-07 52.4 11.4 111 68-217 51-166 (215)
186 cd04111 Rab39 Rab39 subfamily. 97.2 0.0032 7E-08 53.8 10.2 109 69-216 54-165 (211)
187 PRK05306 infB translation init 97.2 0.0033 7.2E-08 64.2 11.8 111 68-214 338-449 (787)
188 cd04167 Snu114p Snu114p subfam 97.2 0.004 8.6E-08 53.1 10.5 66 68-147 72-137 (213)
189 PTZ00369 Ras-like protein; Pro 97.2 0.0031 6.7E-08 52.5 9.5 110 69-215 55-165 (189)
190 PRK09435 membrane ATPase/prote 97.2 0.0086 1.9E-07 55.4 13.3 28 192-219 235-262 (332)
191 cd04125 RabA_like RabA-like su 97.2 0.0053 1.1E-07 50.8 10.9 110 69-217 51-162 (188)
192 PRK09518 bifunctional cytidyla 97.2 0.0031 6.7E-08 63.7 11.1 141 37-217 283-436 (712)
193 TIGR01394 TypA_BipA GTP-bindin 97.2 0.0061 1.3E-07 60.5 12.7 118 67-218 64-192 (594)
194 cd04143 Rhes_like Rhes_like su 97.2 0.007 1.5E-07 53.4 11.8 111 70-218 51-172 (247)
195 PF04670 Gtr1_RagA: Gtr1/RagA 97.2 0.0023 4.9E-08 56.4 8.6 129 68-223 49-183 (232)
196 cd04129 Rho2 Rho2 subfamily. 97.1 0.0043 9.4E-08 51.5 9.9 123 68-216 50-172 (187)
197 KOG0458 Elongation factor 1 al 97.1 0.0015 3.2E-08 64.0 7.7 105 67-208 255-373 (603)
198 cd04133 Rop_like Rop subfamily 97.1 0.004 8.7E-08 52.0 9.0 120 68-216 50-172 (176)
199 cd04169 RF3 RF3 subfamily. Pe 97.0 0.012 2.7E-07 52.5 12.4 68 67-148 71-138 (267)
200 TIGR00484 EF-G translation elo 97.0 0.019 4.2E-07 57.8 15.2 67 67-147 75-141 (689)
201 cd01858 NGP_1 NGP-1. Autoanti 97.0 0.0028 6.1E-08 51.4 7.7 83 102-216 11-94 (157)
202 cd04120 Rab12 Rab12 subfamily. 97.0 0.0094 2E-07 50.9 11.2 110 69-216 51-162 (202)
203 PRK10218 GTP-binding protein; 97.0 0.0085 1.9E-07 59.6 12.3 116 68-217 69-195 (607)
204 PRK12739 elongation factor G; 97.0 0.014 3E-07 58.8 14.0 68 67-148 73-140 (691)
205 COG0481 LepA Membrane GTPase L 97.0 0.0032 6.8E-08 60.7 8.8 110 67-218 74-187 (603)
206 COG4917 EutP Ethanolamine util 97.0 0.0017 3.6E-08 52.5 5.7 103 70-213 40-142 (148)
207 PRK00007 elongation factor G; 97.0 0.015 3.2E-07 58.7 13.8 68 67-148 75-142 (693)
208 cd04108 Rab36_Rab34 Rab34/Rab3 97.0 0.015 3.2E-07 47.7 11.2 111 68-215 50-163 (170)
209 cd01885 EF2 EF2 (for archaea a 96.9 0.013 2.8E-07 51.0 11.2 65 68-146 74-138 (222)
210 cd04121 Rab40 Rab40 subfamily. 96.9 0.018 3.9E-07 48.6 11.8 107 70-216 58-166 (189)
211 TIGR00750 lao LAO/AO transport 96.9 0.015 3.2E-07 52.7 11.7 68 132-219 171-240 (300)
212 PF09439 SRPRB: Signal recogni 96.9 0.0016 3.5E-08 55.3 5.1 104 36-148 9-127 (181)
213 TIGR00450 mnmE_trmE_thdF tRNA 96.9 0.0088 1.9E-07 57.3 10.7 102 38-148 212-325 (442)
214 PRK12740 elongation factor G; 96.9 0.027 5.8E-07 56.4 14.5 68 67-148 60-127 (668)
215 KOG0462 Elongation factor-type 96.9 0.0068 1.5E-07 59.3 9.6 109 70-218 128-236 (650)
216 cd01849 YlqF_related_GTPase Yl 96.8 0.004 8.6E-08 50.5 6.8 81 102-215 2-83 (155)
217 cd04126 Rab20 Rab20 subfamily. 96.8 0.023 4.9E-07 49.3 11.9 133 69-215 46-188 (220)
218 KOG0090 Signal recognition par 96.8 0.011 2.5E-07 51.6 9.7 137 69-216 84-238 (238)
219 cd01856 YlqF YlqF. Proteins o 96.8 0.0073 1.6E-07 49.8 8.3 89 88-216 11-100 (171)
220 TIGR03596 GTPase_YlqF ribosome 96.8 0.0071 1.5E-07 54.1 8.7 90 88-217 13-103 (276)
221 cd04117 Rab15 Rab15 subfamily. 96.8 0.012 2.5E-07 47.6 9.0 108 69-215 51-160 (161)
222 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 96.7 0.018 4E-07 50.4 10.8 120 69-215 63-186 (232)
223 cd04162 Arl9_Arfrp2_like Arl9/ 96.7 0.028 6.1E-07 45.7 11.2 109 68-212 45-161 (164)
224 cd04104 p47_IIGP_like p47 (47- 96.7 0.038 8.2E-07 46.6 12.3 128 68-217 53-184 (197)
225 PLN03108 Rab family protein; P 96.7 0.03 6.4E-07 47.7 11.5 107 69-214 57-165 (210)
226 cd01859 MJ1464 MJ1464. This f 96.7 0.015 3.2E-07 46.9 8.9 93 88-217 3-96 (156)
227 COG2229 Predicted GTPase [Gene 96.6 0.037 8E-07 47.1 11.2 111 68-220 69-181 (187)
228 smart00176 RAN Ran (Ras-relate 96.6 0.045 9.7E-07 46.7 12.0 106 69-216 46-153 (200)
229 KOG0461 Selenocysteine-specifi 96.6 0.022 4.7E-07 53.3 10.5 115 68-216 71-192 (522)
230 cd04131 Rnd Rnd subfamily. Th 96.6 0.023 4.9E-07 47.3 9.7 119 69-215 51-174 (178)
231 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 96.5 0.026 5.6E-07 47.3 9.9 120 69-215 55-178 (182)
232 PRK09563 rbgA GTPase YlqF; Rev 96.5 0.012 2.5E-07 53.0 8.3 91 87-217 15-106 (287)
233 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 96.5 0.025 5.4E-07 49.2 10.1 121 69-215 51-174 (222)
234 COG2262 HflX GTPases [General 96.4 0.038 8.2E-07 52.3 11.1 115 67-218 240-357 (411)
235 PRK13351 elongation factor G; 96.4 0.078 1.7E-06 53.3 14.1 67 68-148 74-140 (687)
236 PLN03071 GTP-binding nuclear p 96.3 0.063 1.4E-06 46.1 11.1 107 68-216 63-171 (219)
237 cd01850 CDC_Septin CDC/Septin. 96.3 0.047 1E-06 49.0 10.6 76 68-149 64-159 (276)
238 cd01873 RhoBTB RhoBTB subfamil 96.3 0.042 9.2E-07 46.5 9.7 123 68-214 67-193 (195)
239 PF00071 Ras: Ras family; Int 96.2 0.031 6.6E-07 44.5 8.3 108 69-215 50-159 (162)
240 COG0486 ThdF Predicted GTPase 96.2 0.033 7.1E-07 53.5 9.4 140 38-219 226-378 (454)
241 COG3276 SelB Selenocysteine-sp 96.1 0.032 7E-07 53.2 8.8 105 69-217 52-162 (447)
242 PRK12289 GTPase RsgA; Reviewed 96.1 0.031 6.7E-07 52.1 8.7 111 67-214 55-172 (352)
243 cd01899 Ygr210 Ygr210 subfamil 96.0 0.11 2.5E-06 47.7 12.1 38 189-226 240-278 (318)
244 KOG0460 Mitochondrial translat 96.0 0.02 4.3E-07 53.4 6.7 77 66-157 116-193 (449)
245 KOG1490 GTP-binding protein CR 95.9 0.019 4E-07 55.9 6.6 76 69-149 217-297 (620)
246 cd01855 YqeH YqeH. YqeH is an 95.9 0.068 1.5E-06 44.5 9.4 87 102-217 37-125 (190)
247 PF01926 MMR_HSR1: 50S ribosom 95.9 0.019 4.2E-07 43.8 5.5 67 67-142 47-116 (116)
248 cd04103 Centaurin_gamma Centau 95.9 0.14 3E-06 41.6 10.7 104 69-214 49-156 (158)
249 PRK00098 GTPase RsgA; Reviewed 95.8 0.065 1.4E-06 48.5 9.4 85 97-213 79-163 (298)
250 PF00025 Arf: ADP-ribosylation 95.8 0.16 3.5E-06 42.0 11.0 113 68-215 59-174 (175)
251 KOG1489 Predicted GTP-binding 95.8 0.13 2.9E-06 47.5 11.2 145 38-214 205-364 (366)
252 PRK00741 prfC peptide chain re 95.8 0.34 7.3E-06 47.6 14.7 67 67-147 79-145 (526)
253 TIGR03597 GTPase_YqeH ribosome 95.7 0.072 1.6E-06 49.6 9.5 97 87-215 53-151 (360)
254 smart00053 DYNc Dynamin, GTPas 95.6 0.079 1.7E-06 46.9 8.9 76 67-149 125-208 (240)
255 COG5257 GCD11 Translation init 95.6 0.083 1.8E-06 49.1 9.1 112 69-218 88-203 (415)
256 PRK13796 GTPase YqeH; Provisio 95.5 0.12 2.7E-06 48.1 10.3 97 87-215 59-157 (365)
257 TIGR00503 prfC peptide chain r 95.5 0.045 9.7E-07 53.6 7.6 66 67-147 80-146 (527)
258 PF04548 AIG1: AIG1 family; I 95.5 0.17 3.8E-06 43.2 10.4 127 67-218 49-187 (212)
259 COG1084 Predicted GTPase [Gene 95.5 0.041 8.8E-07 50.9 6.7 73 68-148 216-295 (346)
260 PRK01889 GTPase RsgA; Reviewed 95.2 0.14 3.1E-06 47.6 9.6 112 67-213 72-193 (356)
261 TIGR00157 ribosome small subun 95.2 0.22 4.7E-06 43.9 10.2 55 132-214 66-120 (245)
262 PTZ00416 elongation factor 2; 95.2 0.052 1.1E-06 56.0 7.1 64 69-146 94-157 (836)
263 cd01857 HSR1_MMR1 HSR1/MMR1. 95.1 0.14 3.1E-06 40.7 8.0 54 88-148 3-57 (141)
264 COG1100 GTPase SAR1 and relate 94.9 0.47 1E-05 39.7 11.2 129 69-218 56-186 (219)
265 PRK07560 elongation factor EF- 94.8 0.26 5.5E-06 50.2 10.9 65 69-147 89-153 (731)
266 PRK12288 GTPase RsgA; Reviewed 94.7 0.32 7E-06 45.2 10.4 58 131-214 148-205 (347)
267 TIGR00490 aEF-2 translation el 94.7 0.086 1.9E-06 53.5 7.1 65 68-147 87-152 (720)
268 PLN00116 translation elongatio 94.3 0.28 6.2E-06 50.7 10.0 63 70-147 101-164 (843)
269 KOG1145 Mitochondrial translat 94.3 0.6 1.3E-05 46.2 11.4 60 132-213 252-312 (683)
270 cd03112 CobW_like The function 93.5 0.21 4.5E-06 40.9 5.9 70 66-145 86-158 (158)
271 PTZ00132 GTP-binding nuclear p 93.4 0.89 1.9E-05 38.4 9.9 110 68-219 59-170 (215)
272 TIGR00101 ureG urease accessor 93.2 0.77 1.7E-05 39.1 9.1 100 66-215 91-194 (199)
273 cd04178 Nucleostemin_like Nucl 93.1 0.12 2.7E-06 43.1 4.1 50 102-156 2-52 (172)
274 cd00066 G-alpha G protein alph 92.9 0.69 1.5E-05 42.3 9.0 133 68-216 162-310 (317)
275 cd01854 YjeQ_engC YjeQ/EngC. 92.9 0.56 1.2E-05 42.2 8.2 83 98-214 78-161 (287)
276 COG5258 GTPBP1 GTPase [General 92.7 1.2 2.5E-05 42.6 10.2 129 68-213 202-335 (527)
277 PF06858 NOG1: Nucleolar GTP-b 92.7 0.39 8.5E-06 33.4 5.3 44 98-144 12-58 (58)
278 COG5019 CDC3 Septin family pro 92.6 0.97 2.1E-05 42.5 9.5 119 68-218 83-224 (373)
279 KOG0084 GTPase Rab1/YPT1, smal 92.5 1.4 3.1E-05 38.1 9.7 110 69-216 60-171 (205)
280 TIGR00991 3a0901s02IAP34 GTP-b 92.2 0.75 1.6E-05 42.4 8.2 121 38-162 47-183 (313)
281 cd03110 Fer4_NifH_child This p 92.1 2.8 6.1E-05 34.2 10.9 63 66-146 92-156 (179)
282 KOG0466 Translation initiation 92.0 0.48 1E-05 44.0 6.6 64 132-219 177-243 (466)
283 PRK10463 hydrogenase nickel in 91.5 0.28 6.1E-06 44.7 4.6 57 132-214 229-286 (290)
284 PF08477 Miro: Miro-like prote 91.4 0.41 8.9E-06 36.0 4.8 64 69-144 52-119 (119)
285 cd03114 ArgK-like The function 90.9 1 2.2E-05 36.5 7.0 58 66-144 91-148 (148)
286 PF00350 Dynamin_N: Dynamin fa 90.8 0.64 1.4E-05 37.3 5.6 69 66-143 100-168 (168)
287 KOG3887 Predicted small GTPase 90.6 2.5 5.4E-05 38.2 9.5 124 68-218 76-204 (347)
288 cd02036 MinD Bacterial cell di 90.5 0.26 5.6E-06 39.9 3.1 12 68-79 64-75 (179)
289 TIGR01969 minD_arch cell divis 90.2 4.8 0.0001 34.4 11.0 64 66-145 108-172 (251)
290 cd04102 RabL3 RabL3 (Rab-like3 89.2 2.3 4.9E-05 36.4 8.0 16 133-148 129-144 (202)
291 TIGR00073 hypB hydrogenase acc 89.2 0.77 1.7E-05 38.9 5.1 57 132-214 147-204 (207)
292 COG0480 FusA Translation elong 88.9 1 2.3E-05 45.7 6.5 68 67-148 76-143 (697)
293 TIGR01425 SRP54_euk signal rec 88.5 4.1 9E-05 39.1 10.0 71 66-149 182-255 (429)
294 cd01853 Toc34_like Toc34-like 88.5 1.9 4.1E-05 38.2 7.3 78 68-149 80-165 (249)
295 PRK14722 flhF flagellar biosyn 88.0 2.8 6.1E-05 39.5 8.5 85 64-152 213-300 (374)
296 KOG0395 Ras-related GTPase [Ge 87.9 1.9 4.2E-05 36.7 6.7 112 68-216 52-164 (196)
297 cd03115 SRP The signal recogni 87.4 4.6 0.0001 32.8 8.5 74 66-149 82-155 (173)
298 smart00275 G_alpha G protein a 87.4 10 0.00022 35.1 11.7 179 20-215 116-332 (342)
299 COG1217 TypA Predicted membran 86.4 1.3 2.9E-05 43.1 5.3 64 69-147 70-134 (603)
300 COG1161 Predicted GTPases [Gen 86.2 2.7 5.9E-05 38.6 7.1 72 70-157 13-84 (322)
301 KOG0078 GTP-binding protein SE 86.2 4 8.7E-05 35.5 7.7 110 70-217 64-174 (207)
302 CHL00175 minD septum-site dete 85.7 0.84 1.8E-05 40.4 3.5 14 66-79 126-139 (281)
303 KOG2655 Septin family protein 85.5 3.2 6.8E-05 39.1 7.2 73 69-149 81-174 (366)
304 PF00448 SRP54: SRP54-type pro 85.0 5.7 0.00012 33.8 8.1 75 66-151 83-158 (196)
305 PRK12727 flagellar biosynthesi 84.4 4.1 9E-05 40.4 7.8 73 66-150 428-501 (559)
306 PRK10818 cell division inhibit 84.3 1.5 3.4E-05 38.3 4.5 14 66-79 113-126 (270)
307 KOG0465 Mitochondrial elongati 84.2 10 0.00023 38.1 10.4 67 68-148 105-171 (721)
308 KOG2486 Predicted GTPase [Gene 84.1 2.4 5.2E-05 38.8 5.6 76 66-148 182-263 (320)
309 TIGR03348 VI_IcmF type VI secr 83.8 3.8 8.2E-05 44.0 7.9 77 67-147 161-257 (1169)
310 PRK05703 flhF flagellar biosyn 83.6 6.1 0.00013 37.7 8.5 74 66-150 299-374 (424)
311 COG1192 Soj ATPases involved i 83.5 1 2.2E-05 39.2 3.0 14 66-79 119-132 (259)
312 PRK06731 flhF flagellar biosyn 83.5 5.3 0.00012 35.9 7.6 75 66-151 154-229 (270)
313 KOG0094 GTPase Rab6/YPT6/Ryh1, 83.1 4.6 0.0001 35.1 6.6 32 192-223 160-191 (221)
314 PLN00023 GTP-binding protein; 83.0 6.5 0.00014 36.6 8.1 68 69-148 85-166 (334)
315 PHA02519 plasmid partition pro 82.6 3.2 7E-05 39.1 6.1 15 67-81 235-249 (387)
316 PRK10416 signal recognition pa 82.4 6.3 0.00014 36.2 7.8 77 66-149 196-275 (318)
317 PRK14723 flhF flagellar biosyn 82.3 8.7 0.00019 39.6 9.4 80 64-151 261-341 (767)
318 KOG1191 Mitochondrial GTPase [ 81.7 3.5 7.5E-05 40.3 5.9 127 20-148 251-404 (531)
319 KOG0468 U5 snRNP-specific prot 80.9 2.4 5.2E-05 43.1 4.7 61 70-146 200-262 (971)
320 COG4108 PrfC Peptide chain rel 80.7 3.4 7.4E-05 40.0 5.5 66 69-148 83-148 (528)
321 PRK13869 plasmid-partitioning 80.7 4.7 0.0001 38.2 6.5 23 57-79 241-264 (405)
322 PRK12724 flagellar biosynthesi 80.5 7.9 0.00017 37.3 7.9 75 66-151 299-377 (432)
323 PRK12723 flagellar biosynthesi 80.1 9.3 0.0002 36.2 8.2 76 66-152 254-331 (388)
324 PRK09602 translation-associate 80.0 4.7 0.0001 38.2 6.3 38 190-227 243-281 (396)
325 PRK11889 flhF flagellar biosyn 79.8 7.2 0.00016 37.5 7.3 75 67-152 321-396 (436)
326 KOG0393 Ras-related small GTPa 79.4 6.3 0.00014 34.0 6.3 118 70-213 56-175 (198)
327 PF00503 G-alpha: G-protein al 78.6 3.7 8E-05 38.3 5.0 134 68-215 237-388 (389)
328 PRK13849 putative crown gall t 77.7 12 0.00026 32.6 7.7 14 131-144 138-151 (231)
329 TIGR03018 pepcterm_TyrKin exop 77.5 3 6.5E-05 35.3 3.8 14 66-79 148-161 (207)
330 TIGR00064 ftsY signal recognit 77.1 13 0.00028 33.3 7.8 78 66-150 154-234 (272)
331 KOG0098 GTPase Rab2, small G p 77.0 9.1 0.0002 33.2 6.4 109 69-214 57-165 (216)
332 cd02038 FleN-like FleN is a me 76.4 34 0.00075 26.9 9.5 62 67-144 45-108 (139)
333 cd02040 NifH NifH gene encodes 75.8 1.8 3.8E-05 37.7 1.9 28 175-205 238-265 (270)
334 cd02037 MRP-like MRP (Multiple 75.8 4 8.7E-05 33.1 4.0 66 66-145 67-133 (169)
335 PRK00771 signal recognition pa 75.1 12 0.00026 36.0 7.5 68 67-148 176-247 (437)
336 TIGR03453 partition_RepA plasm 74.7 10 0.00022 35.4 6.8 22 57-78 224-246 (387)
337 PF00735 Septin: Septin; Inte 73.6 13 0.00027 33.6 6.9 45 102-153 116-161 (281)
338 cd02032 Bchl_like This family 73.5 3.4 7.5E-05 36.1 3.2 14 66-79 115-128 (267)
339 PRK10867 signal recognition pa 72.4 13 0.00027 35.9 6.9 43 66-111 183-225 (433)
340 PRK14974 cell division protein 72.0 19 0.00041 33.4 7.9 72 66-149 222-295 (336)
341 KOG2874 rRNA processing protei 71.8 2.4 5.2E-05 38.6 1.8 35 15-49 139-177 (356)
342 PF01656 CbiA: CobQ/CobB/MinD/ 71.2 18 0.00038 29.3 6.8 64 67-146 95-161 (195)
343 KOG0079 GTP-binding protein H- 70.8 20 0.00042 30.2 6.8 72 72-149 50-128 (198)
344 TIGR03371 cellulose_yhjQ cellu 70.3 16 0.00034 31.2 6.5 24 55-78 101-126 (246)
345 COG1341 Predicted GTPase or GT 68.8 7.1 0.00015 37.2 4.3 70 1-78 104-183 (398)
346 PF09140 MipZ: ATPase MipZ; I 68.8 3.1 6.7E-05 37.4 1.8 11 66-76 98-108 (261)
347 KOG0467 Translation elongation 68.8 5.5 0.00012 40.9 3.8 65 68-146 73-137 (887)
348 TIGR00959 ffh signal recogniti 67.1 20 0.00043 34.5 7.0 13 66-78 182-194 (428)
349 TIGR01968 minD_bact septum sit 66.8 6 0.00013 33.9 3.2 14 66-79 111-124 (261)
350 TIGR00993 3a0901s04IAP86 chlor 66.2 37 0.0008 34.9 8.9 30 135-164 238-273 (763)
351 KOG2423 Nucleolar GTPase [Gene 64.9 32 0.00068 33.3 7.7 116 88-211 201-329 (572)
352 PRK06995 flhF flagellar biosyn 62.6 34 0.00074 33.5 7.8 74 66-150 334-408 (484)
353 KOG2749 mRNA cleavage and poly 61.2 52 0.0011 31.3 8.3 102 2-110 135-249 (415)
354 TIGR02836 spore_IV_A stage IV 61.1 15 0.00032 35.7 4.9 48 99-146 144-193 (492)
355 KOG0447 Dynamin-like GTP bindi 59.4 21 0.00045 35.9 5.6 77 68-148 413-494 (980)
356 COG1348 NifH Nitrogenase subun 59.1 42 0.00091 30.2 7.0 98 40-147 99-223 (278)
357 cd01900 YchF YchF subfamily. 58.6 27 0.00059 31.4 6.0 52 55-110 48-103 (274)
358 PRK10037 cell division protein 58.4 8.3 0.00018 33.5 2.6 24 56-79 104-130 (250)
359 PRK12726 flagellar biosynthesi 58.4 46 0.001 31.9 7.6 13 66-78 285-297 (407)
360 KOG2484 GTPase [General functi 58.3 12 0.00026 35.8 3.7 48 101-157 148-200 (435)
361 PRK13705 plasmid-partitioning 57.9 20 0.00043 33.8 5.2 24 57-80 224-248 (388)
362 PRK04173 glycyl-tRNA synthetas 57.8 13 0.00029 35.8 4.1 40 30-76 27-66 (456)
363 PRK13232 nifH nitrogenase redu 57.6 9.2 0.0002 33.6 2.8 22 57-78 106-128 (273)
364 COG4604 CeuD ABC-type enteroch 56.8 20 0.00044 31.6 4.6 53 66-119 153-206 (252)
365 KOG3905 Dynein light intermedi 56.4 15 0.00032 34.6 3.9 18 130-147 219-236 (473)
366 TIGR03815 CpaE_hom_Actino heli 56.2 28 0.0006 31.5 5.7 13 66-78 204-216 (322)
367 PHA02518 ParA-like protein; Pr 56.0 12 0.00027 30.9 3.2 13 66-78 76-88 (211)
368 COG2894 MinD Septum formation 55.8 9 0.0002 34.1 2.3 24 55-79 103-126 (272)
369 KOG0464 Elongation factor G [T 55.6 9.2 0.0002 37.1 2.5 66 69-148 104-169 (753)
370 COG0378 HypB Ni2+-binding GTPa 54.3 23 0.00049 30.7 4.5 25 191-215 175-199 (202)
371 COG1163 DRG Predicted GTPase [ 53.9 25 0.00055 32.9 5.0 83 131-217 237-328 (365)
372 PF03308 ArgK: ArgK protein; 51.0 19 0.0004 32.6 3.6 127 37-219 101-232 (266)
373 cd02034 CooC The accessory pro 50.9 7.1 0.00015 30.4 0.8 14 66-79 86-99 (116)
374 TIGR01007 eps_fam capsular exo 50.6 1.4E+02 0.0031 24.6 9.0 66 66-146 127-193 (204)
375 COG1162 Predicted GTPases [Gen 49.2 42 0.00091 30.8 5.6 59 127-214 104-164 (301)
376 TIGR00347 bioD dethiobiotin sy 48.8 1.4E+02 0.0029 23.8 8.5 64 66-139 99-163 (166)
377 PRK14721 flhF flagellar biosyn 48.3 86 0.0019 30.1 7.9 75 66-151 269-344 (420)
378 KOG0097 GTPase Rab14, small G 48.3 1.4E+02 0.0029 24.9 7.9 116 70-213 51-169 (215)
379 KOG1954 Endocytosis/signaling 48.1 55 0.0012 31.5 6.3 77 67-149 147-227 (532)
380 PRK13236 nitrogenase reductase 48.1 21 0.00046 32.1 3.5 14 1-14 37-50 (296)
381 PF02492 cobW: CobW/HypB/UreG, 47.6 15 0.00033 30.3 2.4 73 66-149 84-157 (178)
382 KOG0092 GTPase Rab5/YPT51 and 45.8 2E+02 0.0044 24.9 10.8 116 68-223 55-173 (200)
383 TIGR02475 CobW cobalamin biosy 45.4 48 0.001 30.7 5.5 75 66-149 92-189 (341)
384 TIGR03499 FlhF flagellar biosy 44.8 17 0.00038 32.5 2.5 17 60-76 266-282 (282)
385 PF02684 LpxB: Lipid-A-disacch 44.1 94 0.002 29.3 7.3 59 45-113 63-121 (373)
386 PRK09601 GTP-binding protein Y 44.1 33 0.00072 32.3 4.3 40 67-110 66-107 (364)
387 COG1030 NfeD Membrane-bound se 43.8 75 0.0016 30.7 6.6 46 69-120 61-107 (436)
388 PRK13231 nitrogenase reductase 43.5 19 0.00041 31.4 2.5 12 67-78 114-125 (264)
389 KOG0093 GTPase Rab3, small G p 43.3 1.6E+02 0.0035 24.8 7.7 66 68-147 71-140 (193)
390 PRK11537 putative GTP-binding 43.0 63 0.0014 29.6 5.9 74 66-149 90-166 (318)
391 KOG2423 Nucleolar GTPase [Gene 42.5 24 0.00051 34.2 3.0 36 110-145 410-445 (572)
392 KOG2882 p-Nitrophenyl phosphat 42.4 59 0.0013 30.0 5.5 42 67-110 22-64 (306)
393 KOG1143 Predicted translation 41.1 2.7E+02 0.0058 27.1 9.7 133 69-219 251-390 (591)
394 KOG0075 GTP-binding ADP-ribosy 41.1 2.2E+02 0.0048 24.0 11.7 109 69-214 67-179 (186)
395 PF04493 Endonuclease_5: Endon 40.9 58 0.0013 28.2 5.0 55 85-144 74-128 (206)
396 PTZ00258 GTP-binding protein; 40.1 50 0.0011 31.4 4.9 41 67-110 85-126 (390)
397 cd03111 CpaE_like This protein 40.0 17 0.00037 27.4 1.4 13 67-79 43-55 (106)
398 KOG0082 G-protein alpha subuni 39.9 1.1E+02 0.0024 28.8 7.0 134 66-215 194-342 (354)
399 PRK13235 nifH nitrogenase redu 39.5 26 0.00056 30.8 2.7 13 66-78 117-129 (274)
400 PRK13233 nifH nitrogenase redu 39.1 25 0.00055 30.8 2.6 20 58-77 109-129 (275)
401 PF14331 ImcF-related_N: ImcF- 39.1 28 0.0006 31.0 2.8 61 87-148 10-84 (266)
402 TIGR01281 DPOR_bchL light-inde 38.6 18 0.0004 31.5 1.6 14 66-79 115-128 (268)
403 KOG0091 GTPase Rab39, small G 38.5 2.5E+02 0.0055 24.0 9.3 76 112-214 91-170 (213)
404 COG0455 flhG Antiactivator of 37.9 3E+02 0.0064 24.6 10.1 125 1-144 35-177 (262)
405 PRK13185 chlL protochlorophyll 37.2 20 0.00043 31.3 1.6 14 66-79 117-130 (270)
406 PF05783 DLIC: Dynein light in 36.8 74 0.0016 31.0 5.5 18 130-147 193-210 (472)
407 PF13479 AAA_24: AAA domain 36.5 77 0.0017 26.9 5.1 52 2-79 27-81 (213)
408 cd02042 ParA ParA and ParB of 36.5 22 0.00048 26.0 1.6 12 67-78 40-51 (104)
409 PRK13230 nitrogenase reductase 36.4 20 0.00044 31.6 1.5 13 66-78 116-128 (279)
410 cd01854 YjeQ_engC YjeQ/EngC. 36.2 14 0.0003 33.2 0.4 47 68-119 214-265 (287)
411 PRK09602 translation-associate 35.5 52 0.0011 31.2 4.2 39 69-110 74-113 (396)
412 CHL00072 chlL photochlorophyll 35.3 32 0.0007 30.9 2.7 12 66-77 115-126 (290)
413 KOG0088 GTPase Rab21, small G 35.2 2.6E+02 0.0056 23.8 7.7 70 66-147 61-132 (218)
414 cd01051 Mn_catalase Manganese 34.8 45 0.00096 27.5 3.2 41 12-53 7-47 (156)
415 TIGR01287 nifH nitrogenase iro 34.8 22 0.00049 31.1 1.5 29 175-206 237-265 (275)
416 cd02117 NifH_like This family 33.5 28 0.00062 29.3 1.9 13 66-78 116-128 (212)
417 cd02035 ArsA ArsA ATPase funct 32.6 78 0.0017 26.8 4.5 67 67-145 114-182 (217)
418 PF05067 Mn_catalase: Manganes 32.5 26 0.00056 32.0 1.5 41 12-53 7-47 (283)
419 PF07476 MAAL_C: Methylasparta 32.5 57 0.0012 29.0 3.6 77 35-121 41-124 (248)
420 cd00550 ArsA_ATPase Oxyanion-t 32.5 3.4E+02 0.0073 23.6 12.9 19 192-210 233-251 (254)
421 PF06564 YhjQ: YhjQ protein; 31.6 68 0.0015 28.5 4.0 58 44-111 93-153 (243)
422 COG0541 Ffh Signal recognition 29.7 1.7E+02 0.0038 28.4 6.6 46 66-117 182-230 (451)
423 KOG0469 Elongation factor 2 [T 28.3 1.2E+02 0.0026 30.4 5.3 61 71-145 102-162 (842)
424 KOG2485 Conserved ATP/GTP bind 28.3 1.4E+02 0.003 27.9 5.5 64 70-148 25-88 (335)
425 TIGR02016 BchX chlorophyllide 27.8 53 0.0012 29.6 2.8 14 66-79 122-135 (296)
426 PF10609 ParA: ParA/MinD ATPas 27.4 35 0.00077 25.2 1.3 59 68-141 2-61 (81)
427 KOG1424 Predicted GTP-binding 27.3 98 0.0021 30.8 4.6 53 86-149 164-221 (562)
428 TIGR03134 malonate_gamma malon 26.3 2.3E+02 0.005 25.0 6.5 43 99-141 65-115 (238)
429 PRK13234 nifH nitrogenase redu 25.1 41 0.00089 30.2 1.5 12 66-77 119-130 (295)
430 COG0523 Putative GTPases (G3E 24.5 1.7E+02 0.0037 27.0 5.5 74 67-149 85-161 (323)
431 COG1419 FlhF Flagellar GTP-bin 24.4 3.4E+02 0.0073 26.1 7.5 78 59-150 274-355 (407)
432 KOG1707 Predicted Ras related/ 24.3 1.9E+02 0.0042 29.2 6.0 69 71-149 60-131 (625)
433 PRK00090 bioD dithiobiotin syn 24.1 4.2E+02 0.0092 22.0 10.5 70 66-145 103-174 (222)
434 COG0489 Mrp ATPases involved i 23.7 85 0.0018 27.9 3.3 23 125-147 210-233 (265)
435 cd06387 PBP1_iGluR_AMPA_GluR3 23.6 1.4E+02 0.003 27.8 4.8 41 178-219 111-151 (372)
436 PRK15219 carbonic anhydrase; P 23.5 58 0.0013 28.9 2.1 20 118-140 129-148 (245)
437 COG1137 YhbG ABC-type (unclass 23.1 24 0.00053 31.1 -0.3 7 36-42 36-42 (243)
438 COG1149 MinD superfamily P-loo 23.1 3.3E+02 0.0072 24.9 6.8 73 67-157 164-236 (284)
439 KOG3022 Predicted ATPase, nucl 22.5 90 0.002 28.6 3.1 10 66-75 156-165 (300)
440 cd05009 SIS_GlmS_GlmD_2 SIS (S 22.4 3.1E+02 0.0068 21.0 6.0 62 33-100 18-91 (153)
441 PRK11670 antiporter inner memb 22.2 86 0.0019 29.3 3.1 23 124-146 259-282 (369)
442 COG1703 ArgK Putative periplas 22.1 1.7E+02 0.0038 27.1 4.9 128 39-221 125-258 (323)
443 KOG0410 Predicted GTP binding 22.0 2.7E+02 0.0059 26.4 6.2 102 68-216 227-340 (410)
444 COG0623 FabI Enoyl-[acyl-carri 21.5 1.4E+02 0.0031 26.7 4.1 42 177-218 43-84 (259)
445 PF07015 VirC1: VirC1 protein; 21.4 5.4E+02 0.012 22.7 7.8 67 67-146 84-153 (231)
446 cd01124 KaiC KaiC is a circadi 21.0 1.4E+02 0.0031 23.9 3.9 32 66-97 95-129 (187)
447 cd06367 PBP1_iGluR_NMDA N-term 21.0 3.4E+02 0.0073 24.3 6.7 63 129-204 86-149 (362)
448 KOG4252 GTP-binding protein [S 21.0 94 0.002 27.0 2.8 68 70-149 72-140 (246)
449 PF05049 IIGP: Interferon-indu 20.7 1.5E+02 0.0033 28.0 4.5 67 68-145 87-153 (376)
450 cd01851 GBP Guanylate-binding 20.5 2.4E+02 0.0053 24.1 5.4 73 38-113 16-105 (224)
451 TIGR03029 EpsG chain length de 20.3 1E+02 0.0022 26.9 3.0 12 66-77 212-223 (274)
No 1
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=100.00 E-value=9.8e-78 Score=512.32 Aligned_cols=232 Identities=62% Similarity=1.109 Sum_probs=217.0
Q ss_pred CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCCCceee
Q 026584 1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL 80 (236)
Q Consensus 1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PGQiEl 80 (236)
+++||||||+|.+.|++.+||||+|+++||||++.|||||||+|||||+.+|+ +|+.++++.+ +++|+||||||||||
T Consensus 34 ~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~~Nl-dwL~~~~Gd~-eddylifDcPGQIEL 111 (273)
T KOG1534|consen 34 VHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLLENL-DWLEEEIGDV-EDDYLIFDCPGQIEL 111 (273)
T ss_pred eEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHHHHHH-HHHHhhccCc-cCCEEEEeCCCeeEE
Confidence 47999999999999999999999999999999999999999999999999999 9999999988 999999999999999
Q ss_pred eeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc--hhHhhhhccc
Q 026584 81 FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN--KKEIEDYLNP 158 (236)
Q Consensus 81 f~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~--~~~l~~~l~~ 158 (236)
|||.+.+++|++.|+++++|+|+|||+||++..|..+|+|++|.|+|+|+++++|||||+||+||++. ++++++|+++
T Consensus 112 ytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~ 191 (273)
T KOG1534|consen 112 YTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLKDKNKKELERFLNP 191 (273)
T ss_pred eecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhhhhhHHHHHHhcCC
Confidence 99999999999999889999999999999999999999999999999999999999999999999985 3478999998
Q ss_pred cHHHHHH--HhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccCCCCCCCCCCCCCC
Q 026584 159 ESQFLLS--ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIKDFDPEDDD 235 (236)
Q Consensus 159 ~~~~l~~--~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~~~~~~~~~~~~~ 235 (236)
+...+.+ +++. ..+||++|+++|++++++|++++|+|++..+++||..+++.||.+.|||||+||++||+++.++.
T Consensus 192 d~~~l~~~~~~~~-~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~Ed~E~k~~d~~e~d~~ 269 (273)
T KOG1534|consen 192 DEYLLLEDSEINL-RSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGEDLEPKEPDEDEDDDS 269 (273)
T ss_pred chhhhhccccccc-ccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhccccCccCCCccccccc
Confidence 8766653 3333 33799999999999999999999999999999999999999999999999999999976555543
No 2
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=100.00 E-value=2.5e-74 Score=497.75 Aligned_cols=217 Identities=44% Similarity=0.787 Sum_probs=204.2
Q ss_pred CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCCCceee
Q 026584 1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL 80 (236)
Q Consensus 1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PGQiEl 80 (236)
+++|||||||+++||+|++|||++|+++|||+++|||||||++||||+|+.|+ +|+.++|+.. .++|+|||||||+||
T Consensus 33 ~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~i-dwl~~~l~~~-~~~Y~lFDcPGQVEL 110 (290)
T KOG1533|consen 33 VAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEANI-DWLLEKLKPL-TDHYVLFDCPGQVEL 110 (290)
T ss_pred eEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhhh-HHHHHHhhhc-cCcEEEEeCCCcEEE
Confidence 58999999999999999999999999999999999999999999999999999 9999999997 889999999999999
Q ss_pred eeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHh---hhhcc
Q 026584 81 FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEI---EDYLN 157 (236)
Q Consensus 81 f~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l---~~~l~ 157 (236)
||||+++++|+++|.++++|+|+|+|+|+.+|++|++|+|++|+|+++|+++++||||||||+||++..+++ .+|++
T Consensus 111 ft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~~~ygkl~f~ld~yt 190 (290)
T KOG1533|consen 111 FTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLLKKYGKLPFNLDFYT 190 (290)
T ss_pred EeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHHHhhcccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987655 34555
Q ss_pred --ccHHHHHHHhhh-cchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584 158 --PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 158 --~~~~~l~~~l~~-~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
.|.++|...+.. +..+||+||+++||++|+||++++|.|+++.|++||.+|++.||+|+||.
T Consensus 191 ~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDkAnGy~ 255 (290)
T KOG1533|consen 191 EVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDKANGYI 255 (290)
T ss_pred hhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHhccCeE
Confidence 377788777754 45679999999999999999999999999999999999999999999973
No 3
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=100.00 E-value=1e-67 Score=463.61 Aligned_cols=210 Identities=50% Similarity=0.872 Sum_probs=165.8
Q ss_pred CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCCCceee
Q 026584 1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL 80 (236)
Q Consensus 1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PGQiEl 80 (236)
+++||||||++++||+|+|||||+|+++|||+++|||||||+++|||++.+|+ +|+.++++.. +++|+|||||||+|+
T Consensus 27 ~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~-d~l~~~i~~~-~~~y~l~DtPGQiEl 104 (238)
T PF03029_consen 27 VYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI-DWLDEEIEKY-EDDYLLFDTPGQIEL 104 (238)
T ss_dssp EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-HHHHHHHHHH-H-SEEEEE--SSHHH
T ss_pred ceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-HHHHHHHhhc-CCcEEEEeCCCCEEE
Confidence 57999999999999999999999999999999999999999999999999999 9999999988 789999999999999
Q ss_pred eeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchh-Hhhhhcccc
Q 026584 81 FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKK-EIEDYLNPE 159 (236)
Q Consensus 81 f~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~-~l~~~l~~~ 159 (236)
|+|++++++|+++|++ ++++|+|||+|+.++++|++|+|++|+|+|+|+|+++|||||+||+||++... ...+|.. +
T Consensus 105 f~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~-d 182 (238)
T PF03029_consen 105 FTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSKYLEFILEWFE-D 182 (238)
T ss_dssp HHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHH-S
T ss_pred EEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccchhHHHHHHhc-C
Confidence 9999999999999976 88999999999999999999999999999999999999999999999998431 2233333 4
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhhccCCe-eEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 160 SQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 160 ~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv-~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.+.+...+... +++++++|++++++|+++ +|+|+|+++++++.+|+++||+|+||
T Consensus 183 ~~~l~~~~~~~----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~y 238 (238)
T PF03029_consen 183 PDSLEDLLESD----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQY 238 (238)
T ss_dssp HHHHHHHHHT-----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhcC
Confidence 55555544432 899999999999999997 99999999999999999999999998
No 4
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=100.00 E-value=4.6e-49 Score=347.44 Aligned_cols=214 Identities=24% Similarity=0.461 Sum_probs=192.0
Q ss_pred CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccC-CCCEEEEeCCCcee
Q 026584 1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYL-DDDYLVFDCPGQIE 79 (236)
Q Consensus 1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~-~~~Yil~D~PGQiE 79 (236)
.++||||||+-+.||+..|||||.|++++||++|+||||||+++|+++|.+++++.+ +-|++.. +-+|+|+|||||||
T Consensus 50 pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~tk~dqv~-~~iek~~~~~~~~liDTPGQIE 128 (366)
T KOG1532|consen 50 PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFATKFDQVI-ELIEKRAEEFDYVLIDTPGQIE 128 (366)
T ss_pred CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHHHHHHHHHH-HHHHHhhcccCEEEEcCCCceE
Confidence 489999999999999999999999999999999999999999999999999995432 2333221 34799999999999
Q ss_pred eeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhcccc
Q 026584 80 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPE 159 (236)
Q Consensus 80 lf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~ 159 (236)
.|+|+.++..|.+.|++ .+..|++|++|+...++|..|+|++|.|.|+++|.++|.|.|+||+|+.+.. -..+|++ |
T Consensus 129 ~FtWSAsGsIIte~las-s~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~-fa~eWm~-D 205 (366)
T KOG1532|consen 129 AFTWSASGSIITETLAS-SFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSE-FALEWMT-D 205 (366)
T ss_pred EEEecCCccchHhhHhh-cCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccH-HHHHHHH-H
Confidence 99999999999999965 4889999999999999999999999999999999999999999999998877 4678888 8
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 160 SQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 160 ~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.+.+.+++++...+....|.+++.-.+++|-- ++.+-+|+.+++|+++++.+||++...
T Consensus 206 fE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 206 FEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred HHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 88888888875656789999999999999865 999999999999999999999997543
No 5
>PRK13768 GTPase; Provisional
Probab=100.00 E-value=4.8e-38 Score=277.69 Aligned_cols=217 Identities=31% Similarity=0.573 Sum_probs=197.7
Q ss_pred CEEEecCCCCCCCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCCCceee
Q 026584 1 MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIEL 80 (236)
Q Consensus 1 ~~iVNLDPa~e~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PGQiEl 80 (236)
|.+||+||+.+..||.|++|||+++++++||+++++||||++++|++++..++ +|+.++++.. ..+|+++|||||+|+
T Consensus 33 v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~~~~-~~l~~~l~~~-~~~~~~~d~~g~~~~ 110 (253)
T PRK13768 33 VAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLLTKA-DEIKEEIESL-DADYVLVDTPGQMEL 110 (253)
T ss_pred eEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHHHHH-HHHHHHHHhc-CCCEEEEeCCcHHHH
Confidence 57899999999999999999999999999999999999999999999999999 9999999887 679999999999999
Q ss_pred eeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchh--Hhhhhccc
Q 026584 81 FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKK--EIEDYLNP 158 (236)
Q Consensus 81 f~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~--~l~~~l~~ 158 (236)
|+|++.++.+++.+++.. ..+++||+|+....++.++.+..++.++.+.+.+.|+++|+||+|+++... .+.+++.
T Consensus 111 ~~~~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~- 188 (253)
T PRK13768 111 FAFRESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLE- 188 (253)
T ss_pred HhhhHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHh-
Confidence 999999999999997544 678999999999999999999999999999999999999999999997641 2345555
Q ss_pred cHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhcccccC
Q 026584 159 ESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQWGEDA 222 (236)
Q Consensus 159 ~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y~ed~ 222 (236)
+++++..++....+.+ ++|+++|++.+++++. .+++|+|+++++++++|+..|.+.+..+||.
T Consensus 189 ~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~~~ 252 (253)
T PRK13768 189 DPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGEDL 252 (253)
T ss_pred CHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCCCC
Confidence 7778877777655555 9999999999999987 6999999999999999999999999999986
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.00 E-value=5.1e-09 Score=94.37 Aligned_cols=153 Identities=15% Similarity=0.227 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHH-HhhHHHHHHHhccc----------CCCCEEEEeCCCceeeeeccchHHHHHHHHh-h--CCCceEE
Q 026584 38 PNGGLIYCMEHLE-DNLDDWLAEELDNY----------LDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-S--RNFNVCA 103 (236)
Q Consensus 38 PNGalv~~me~l~-~n~~~wl~~~i~~~----------~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~-~--~~~~~~~ 103 (236)
||.|..+-++.+. +++ ...+.+.+.. .+.+.+++|||| ++.-+..+.+.+.+.. + .+.. ++
T Consensus 15 PNvGKSTLlN~l~G~Ki-sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPG---ih~pk~~l~~~m~~~a~~sl~dvD-li 89 (298)
T COG1159 15 PNVGKSTLLNALVGQKI-SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPG---IHKPKHALGELMNKAARSALKDVD-LI 89 (298)
T ss_pred CCCcHHHHHHHHhcCce-EeecCCcchhhhheeEEEEcCCceEEEEeCCC---CCCcchHHHHHHHHHHHHHhccCc-EE
Confidence 9999999999998 677 7777766642 245789999999 7765555555444443 2 4566 58
Q ss_pred EEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584 104 VYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL 182 (236)
Q Consensus 104 V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l 182 (236)
+|++|+.. +..-..++... +-+...|+|.++||+|.++++..+..+.+
T Consensus 90 lfvvd~~~~~~~~d~~il~~------lk~~~~pvil~iNKID~~~~~~~l~~~~~------------------------- 138 (298)
T COG1159 90 LFVVDADEGWGPGDEFILEQ------LKKTKTPVILVVNKIDKVKPKTVLLKLIA------------------------- 138 (298)
T ss_pred EEEEeccccCCccHHHHHHH------HhhcCCCeEEEEEccccCCcHHHHHHHHH-------------------------
Confidence 99999988 77766666443 22357899999999999987621221111
Q ss_pred HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccCCCCCC
Q 026584 183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIK 227 (236)
Q Consensus 183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~~~~~ 227 (236)
.+-..+.+...+|+|+..+.+++.|...+.+.++.|+=.-|++-
T Consensus 139 -~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 139 -FLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred -HHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhh
Confidence 11223334599999999999999999999999999876666544
No 7
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.89 E-value=1.8e-08 Score=89.60 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=91.4
Q ss_pred ChHHHHHHHHHHHH-hhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchHHHHHHHHh-h-CCCceEEE
Q 026584 38 PNGGLIYCMEHLED-NLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-S-RNFNVCAV 104 (236)
Q Consensus 38 PNGalv~~me~l~~-n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~-~-~~~~~~~V 104 (236)
||.|..+-++.|.. ++ .....+.+. ....+++++||||+.+-. +...+.+.+... . .+.. +++
T Consensus 9 pnvGKSTLln~L~~~~~-~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~l~~~~~~~~~~~l~~aD-vvl 84 (270)
T TIGR00436 9 PNVGKSTLLNQLHGQKI-SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK--HSLNRLMMKEARSAIGGVD-LIL 84 (270)
T ss_pred CCCCHHHHHHHHhCCcE-eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc--chHHHHHHHHHHHHHhhCC-EEE
Confidence 88899999998874 33 222222111 112357999999987752 222222332221 1 2344 589
Q ss_pred EeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584 105 YLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE 184 (236)
Q Consensus 105 ~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~ 184 (236)
+++|+........++ +....+.+.|.+.|+||+|+.... .+... ..+
T Consensus 85 ~VvD~~~~~~~~~~i------~~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~-------------------~~~------- 131 (270)
T TIGR00436 85 FVVDSDQWNGDGEFV------LTKLQNLKRPVVLTRNKLDNKFKD-KLLPL-------------------IDK------- 131 (270)
T ss_pred EEEECCCCCchHHHH------HHHHHhcCCCEEEEEECeeCCCHH-HHHHH-------------------HHH-------
Confidence 999998654443333 222345789999999999997433 21110 001
Q ss_pred HhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccCCC
Q 026584 185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADL 224 (236)
Q Consensus 185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~~ 224 (236)
+...++...++|+|++++++++.|+..|-+.++.++-.-|
T Consensus 132 ~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~ 171 (270)
T TIGR00436 132 YAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYP 171 (270)
T ss_pred HHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCC
Confidence 1111233478999999999999999999999877654333
No 8
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.83 E-value=1e-07 Score=79.84 Aligned_cols=115 Identities=19% Similarity=0.383 Sum_probs=72.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++||||+.. ..+.....++. .. ++++++|+..-..+...- .+.....+++|.|.|+||+|++.
T Consensus 71 ~i~~iDtPG~~~------f~~~~~~~~~~--~D-~ailvVda~~g~~~~~~~-----~l~~~~~~~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 71 KITLIDTPGHED------FIKEMIRGLRQ--AD-IAILVVDANDGIQPQTEE-----HLKILRELGIPIIVVLNKMDLIE 136 (188)
T ss_dssp EEEEEEESSSHH------HHHHHHHHHTT--SS-EEEEEEETTTBSTHHHHH-----HHHHHHHTT-SEEEEEETCTSSH
T ss_pred ceeecccccccc------eeecccceecc--cc-cceeeeeccccccccccc-----ccccccccccceEEeeeeccchh
Confidence 579999999754 34455555633 34 589999997543333221 23445668999999999999982
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
. .+.+. ..++..++.+-...- ..+.++|+|+.++.++..|+.++.+.++
T Consensus 137 ~--~~~~~-------------------~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 137 K--ELEEI-------------------IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp H--HHHHH-------------------HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred h--hHHHH-------------------HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 2 22211 112222222222111 2589999999999999999999988764
No 9
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.69 E-value=3.2e-07 Score=74.12 Aligned_cols=118 Identities=21% Similarity=0.286 Sum_probs=73.1
Q ss_pred CEEEEeCCCceeeeecc-chHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh--hcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHV-PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~-~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~--~l~lP~InVlsK~D 144 (236)
.+.++|||||.+.+... ...+...+.++. .. ++++++|+..-.++...+..+.-.+.... ..+.|.+.|+||+|
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~--~d-~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 125 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIER--TR-LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKID 125 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHh--CC-EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchh
Confidence 67899999998765432 334444455532 33 68999998754234444444433333221 13789999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+.++. ...++.. +.........++++|++++.++..++..|-+.
T Consensus 126 l~~~~-~~~~~~~--------------------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 126 LLDEE-ELFELLK--------------------------ELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred cCCch-hhHHHHH--------------------------HHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 97644 1111100 11112123578999999999999999887653
No 10
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.66 E-value=3.1e-07 Score=73.00 Aligned_cols=113 Identities=20% Similarity=0.244 Sum_probs=68.5
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.++.++|||||-++..........-..+...+.. ++++++|+.... .... . ...+.+.+.|.+.|+||+|+.
T Consensus 43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d-~vi~v~d~~~~~---~~~~-~---~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPD-LIVNVVDATNLE---RNLY-L---TLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred eEEEEEECCCccccCCCChhHHHHHHHhcCCCCc-EEEEEeeCCcch---hHHH-H---HHHHHHcCCCEEEEEehhhhc
Confidence 3589999999988664432211111222212444 689999987532 2111 1 122345799999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
... .... ....+ ...++ ..++|+|+.+++++..++..+.++
T Consensus 115 ~~~-~~~~-------------------~~~~~-------~~~~~-~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 115 EKR-GIKI-------------------DLDKL-------SELLG-VPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ccc-cchh-------------------hHHHH-------HHhhC-CCeEEEEccCCCCHHHHHHHHHHH
Confidence 543 1110 00111 11112 578999999999999999998875
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.66 E-value=1.1e-07 Score=78.71 Aligned_cols=131 Identities=24% Similarity=0.343 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhccc--------------CCCCEEEEeCCCceeeeeccc---hHHHHHHHHhhCCCc
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELDNY--------------LDDDYLVFDCPGQIELFTHVP---VLRNFVDHLKSRNFN 100 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~~--------------~~~~Yil~D~PGQiElf~~~~---~~~~iv~~L~~~~~~ 100 (236)
||-|...-++.|...- . ++.++ ....+.++|+|| +|..++ .-+.-.+.|......
T Consensus 9 PNvGKStLfN~Ltg~~-~----~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG---~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 9 PNVGKSTLFNALTGAK-Q----KVGNWPGTTVEKKEGIFKLGDQQVELVDLPG---IYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp TTSSHHHHHHHHHTTS-E----EEEESTTSSSEEEEEEEEETTEEEEEEE-------SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CCCCHHHHHHHHHCCC-c----eecCCCCCCeeeeeEEEEecCceEEEEECCC---cccCCCCCcHHHHHHHHHhhcCCC
Confidence 7777777777776321 0 22221 135789999999 564332 223334455444455
Q ss_pred eEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584 101 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180 (236)
Q Consensus 101 ~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~ 180 (236)
++++++|+..+. .+-++ +.-+..+++|.|.|+||+|++++++ +. -+ ..+|++
T Consensus 81 -~ii~VvDa~~l~-r~l~l------~~ql~e~g~P~vvvlN~~D~a~~~g-~~----id---------------~~~Ls~ 132 (156)
T PF02421_consen 81 -LIIVVVDATNLE-RNLYL------TLQLLELGIPVVVVLNKMDEAERKG-IE----ID---------------AEKLSE 132 (156)
T ss_dssp -EEEEEEEGGGHH-HHHHH------HHHHHHTTSSEEEEEETHHHHHHTT-EE----E----------------HHHHHH
T ss_pred -EEEEECCCCCHH-HHHHH------HHHHHHcCCCEEEEEeCHHHHHHcC-CE----EC---------------HHHHHH
Confidence 689999998753 33333 3445568999999999999987652 11 01 122222
Q ss_pred HHHHHhhccCCeeEEEeeccCcccHHHHHHHH
Q 026584 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 212 (236)
Q Consensus 181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I 212 (236)
.+. +..+|+|+.+++++++|..+|
T Consensus 133 ----~Lg----~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 133 ----RLG----VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ----HHT----S-EEEEBTTTTBTHHHHHHHH
T ss_pred ----HhC----CCEEEEEeCCCcCHHHHHhhC
Confidence 222 789999999999999999876
No 12
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.64 E-value=4.2e-07 Score=83.54 Aligned_cols=148 Identities=20% Similarity=0.298 Sum_probs=88.9
Q ss_pred ChHHHHHHHHHHHHhh---HH--HHHH--Hhc--ccCC-CCEEEEeCCCceeeeec-cchHHHHHHHHhhCCCceEEEEe
Q 026584 38 PNGGLIYCMEHLEDNL---DD--WLAE--ELD--NYLD-DDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYL 106 (236)
Q Consensus 38 PNGalv~~me~l~~n~---~~--wl~~--~i~--~~~~-~~Yil~D~PGQiElf~~-~~~~~~iv~~L~~~~~~~~~V~L 106 (236)
||.|..+-++.+...- .+ +... .+. .+.+ .++.|+||||++|-... ......+++.+++. + +++|+
T Consensus 166 pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera--d-~ll~V 242 (329)
T TIGR02729 166 PNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT--R-VLLHL 242 (329)
T ss_pred CCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh--C-EEEEE
Confidence 7888888887776421 00 0000 000 1112 46899999999985432 23455666666432 3 68999
Q ss_pred ecCCCc--cchhhHHHHHHHHHHHHh--hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584 107 LDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL 182 (236)
Q Consensus 107 iD~~~~--~dp~~~is~~l~sls~m~--~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l 182 (236)
+|+... ++|-.-+..+.--+.... ..+.|.+.|+||+|+.... ...+ +.+.+
T Consensus 243 vD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-~~~~-----------------------~~~~l 298 (329)
T TIGR02729 243 IDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-ELAE-----------------------LLKEL 298 (329)
T ss_pred EcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH-HHHH-----------------------HHHHH
Confidence 998754 245444444433333322 1478999999999996543 1111 01111
Q ss_pred HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+ +.++ ..++|+|+.+++++++|+..|-+.+
T Consensus 299 ~---~~~~-~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 299 K---KALG-KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred H---HHcC-CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 1 1222 5799999999999999999987654
No 13
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.60 E-value=6.9e-07 Score=84.01 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=89.9
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhc----------ccCCC-CEEEEeCCCceeeee-ccchHHHHHHHHhhCCCceEEEE
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELD----------NYLDD-DYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVY 105 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~----------~~~~~-~Yil~D~PGQiElf~-~~~~~~~iv~~L~~~~~~~~~V~ 105 (236)
||.|..+-++.|...- -.+..... .+.+. .++++||||++|--. ....+.++++.+++ .+ +++|
T Consensus 168 PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r--ad-vlL~ 243 (390)
T PRK12298 168 PNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLER--CR-VLLH 243 (390)
T ss_pred CCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHh--CC-EEEE
Confidence 9999999999987421 11111111 01122 489999999876321 11235566666643 33 6899
Q ss_pred eecCCCc--cchhhHHHHHHHHHHHHh--hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026584 106 LLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS 181 (236)
Q Consensus 106 LiD~~~~--~dp~~~is~~l~sls~m~--~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~ 181 (236)
++|+..+ .+|..-++.++--+.... -.+.|.|.|+||+|+.... ++...+ .
T Consensus 244 VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~-el~~~l-------------------~----- 298 (390)
T PRK12298 244 LIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE-EAEERA-------------------K----- 298 (390)
T ss_pred EeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH-HHHHHH-------------------H-----
Confidence 9998743 244333333333222211 1478999999999997543 221100 0
Q ss_pred HHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584 182 LIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 182 l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
++.+.++. ..++|+|+.+++++++|+..|-+.+..+
T Consensus 299 --~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 299 --AIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred --HHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 11122232 3689999999999999999998877654
No 14
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.60 E-value=1e-07 Score=87.95 Aligned_cols=101 Identities=25% Similarity=0.473 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC----ccchhhHHHHHHHHHHHHhhcCCCEEEE-e
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF----ITDVTKFISGCMASLSAMVQLELPHVNI-L 140 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~----~~dp~~~is~~l~sls~m~~l~lP~InV-l 140 (236)
+.+|||.||||..+ || |+++.--. ... .+|.|+|+.. .+..+.||+++ ||+.|+.| .
T Consensus 85 KRkFIiADTPGHeQ-YT-----RNMaTGAS--Tad-lAIlLVDAR~Gvl~QTrRHs~I~sL---------LGIrhvvvAV 146 (431)
T COG2895 85 KRKFIIADTPGHEQ-YT-----RNMATGAS--TAD-LAILLVDARKGVLEQTRRHSFIASL---------LGIRHVVVAV 146 (431)
T ss_pred cceEEEecCCcHHH-Hh-----hhhhcccc--ccc-EEEEEEecchhhHHHhHHHHHHHHH---------hCCcEEEEEE
Confidence 56899999999665 54 56555442 233 4889999965 57788999876 69999988 8
Q ss_pred cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHH
Q 026584 141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIR 206 (236)
Q Consensus 141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~ 206 (236)
||+||+...++ +|.........+..+-++ +.|+|+|+..++++.
T Consensus 147 NKmDLvdy~e~----------------------~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 147 NKMDLVDYSEE----------------------VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred eeecccccCHH----------------------HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 99999864311 122222222233334443 799999999998874
No 15
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.59 E-value=1.3e-06 Score=74.43 Aligned_cols=112 Identities=21% Similarity=0.307 Sum_probs=66.6
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEeccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~DL 145 (236)
.++.++||||+. +.+......+. ... ++++++|+..-..+...- .+....++++| .|.|+||+|+
T Consensus 65 ~~i~~iDtPG~~------~~~~~~~~~~~--~~D-~~ilVvda~~g~~~~~~~-----~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 65 RHYAHVDCPGHA------DYIKNMITGAA--QMD-GAILVVSATDGPMPQTRE-----HLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred eEEEEEECcCHH------HHHHHHHHHhh--hCC-EEEEEEECCCCCcHHHHH-----HHHHHHHcCCCcEEEEEeCCCC
Confidence 468999999963 23334444443 233 588899987533332211 12334457898 5688999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCccc----------HHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKESS----------IRYVLSQ 211 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~~----------i~~L~~~ 211 (236)
+.+. +..+ ...+.+.+.+..++ -+.|+|+|+.++++ +.-|+.+
T Consensus 131 ~~~~-~~~~----------------------~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~ 187 (195)
T cd01884 131 VDDE-ELLE----------------------LVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDA 187 (195)
T ss_pred CCcH-HHHH----------------------HHHHHHHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHH
Confidence 7433 2111 11112223333333 38999999999886 4577777
Q ss_pred HHHh
Q 026584 212 IDNC 215 (236)
Q Consensus 212 Id~~ 215 (236)
||+.
T Consensus 188 l~~~ 191 (195)
T cd01884 188 LDSY 191 (195)
T ss_pred HHhC
Confidence 7754
No 16
>PRK00089 era GTPase Era; Reviewed
Probab=98.56 E-value=1e-06 Score=78.70 Aligned_cols=148 Identities=20% Similarity=0.316 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHHHh-hHHHHHHHhc----------ccCCCCEEEEeCCCceeeeeccchHHH-HHHHHh-h-CCCceEE
Q 026584 38 PNGGLIYCMEHLEDN-LDDWLAEELD----------NYLDDDYLVFDCPGQIELFTHVPVLRN-FVDHLK-S-RNFNVCA 103 (236)
Q Consensus 38 PNGalv~~me~l~~n-~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~~~~~~~~-iv~~L~-~-~~~~~~~ 103 (236)
||.|..+-++.|... + .....+.+ ...+.+++++||||+.+.. ....+ +..... . .+.. ++
T Consensus 14 pn~GKSTLin~L~g~~~-~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~~~~~~D-~i 88 (292)
T PRK00089 14 PNVGKSTLLNALVGQKI-SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWSSLKDVD-LV 88 (292)
T ss_pred CCCCHHHHHHHHhCCce-eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHHHHhcCC-EE
Confidence 788888888887632 2 11111111 1112479999999965422 22222 222221 1 2344 58
Q ss_pred EEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584 104 VYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL 182 (236)
Q Consensus 104 V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l 182 (236)
++++|+.. +......+. ..+.+.+.|.+.|+||+|+.+...++...+.
T Consensus 89 l~vvd~~~~~~~~~~~i~------~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~------------------------- 137 (292)
T PRK00089 89 LFVVDADEKIGPGDEFIL------EKLKKVKTPVILVLNKIDLVKDKEELLPLLE------------------------- 137 (292)
T ss_pred EEEEeCCCCCChhHHHHH------HHHhhcCCCEEEEEECCcCCCCHHHHHHHHH-------------------------
Confidence 99999976 333333332 2222458999999999999854322221111
Q ss_pred HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccC
Q 026584 183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDA 222 (236)
Q Consensus 183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~ 222 (236)
.+-+.++...++|+|+.+++++..|+..+-+.+..++-.
T Consensus 138 -~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~ 176 (292)
T PRK00089 138 -ELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPY 176 (292)
T ss_pred -HHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 111234567899999999999999999999988766533
No 17
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.56 E-value=1.9e-06 Score=72.21 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=67.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..+.++|||||.. ..+....... ... ++++++|+..-..+...- .+. .....+.|.+.|+||+|+.
T Consensus 68 ~~~~i~DtpG~~~------~~~~~~~~~~--~~d-~vi~VvD~~~~~~~~~~~-~~~----~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 68 LQITLVDCPGHAS------LIRTIIGGAQ--IID-LMLLVVDATKGIQTQTAE-CLV----IGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred ceEEEEECCCcHH------HHHHHHHHHh--hCC-EEEEEEECCCCccHHHHH-HHH----HHHHcCCCEEEEEECcccC
Confidence 3679999999832 2333333332 223 588999987533222211 111 1222488999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhc--cCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d--~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
... ..... ..++.+.+...+.+ +.-+.++|+|+.+++++++|...++.-+
T Consensus 134 ~~~-~~~~~-------------------~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 134 PEE-ERERK-------------------IEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CHH-HHHHH-------------------HHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 533 11110 11111111122222 2347899999999999999999988644
No 18
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.52 E-value=1.5e-06 Score=68.64 Aligned_cols=115 Identities=17% Similarity=0.279 Sum_probs=69.7
Q ss_pred CCEEEEeCCCceeeeeccch-HHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 67 DDYLVFDCPGQIELFTHVPV-LRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
..+.++||||+.+....... ..+..... ..+.. ++++++|+... ......+. ....+.+.|.+.|+||+|
T Consensus 51 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d-~i~~v~d~~~~~~~~~~~~~------~~~~~~~~~~iiv~nK~D 122 (168)
T cd04163 51 AQIIFVDTPGIHKPKKKLGERMVKAAWSA-LKDVD-LVLFVVDASEPIGEGDEFIL------ELLKKSKTPVILVLNKID 122 (168)
T ss_pred eEEEEEECCCCCcchHHHHHHHHHHHHHH-HHhCC-EEEEEEECCCccCchHHHHH------HHHHHhCCCEEEEEEchh
Confidence 35899999997664433221 11111111 12333 58899999765 44433332 223345899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+......+.+++. .+-...+...++++|+.++++++.++..|.+.
T Consensus 123 l~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 123 LVKDKEDLLPLLE--------------------------KLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ccccHHHHHHHHH--------------------------HHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 9743312221111 11122335688999999999999999998764
No 19
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.50 E-value=3.9e-06 Score=65.08 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=76.2
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..+.++|||||.+....+.........+.+ +.. ++++++|+.........- ........+.|.+.|+||+|+.
T Consensus 45 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~-~~d-~il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 45 GPVVLIDTPGIDEAGGLGREREELARRVLE-RAD-LILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred CcEEEEECCCCCccccchhhHHHHHHHHHH-hCC-EEEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEccccC
Confidence 368999999999877655443333333322 233 578899987654443332 2334455799999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
... ....... ........+....++++|+.++.+++.+...+.+.
T Consensus 118 ~~~-~~~~~~~-----------------------~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 118 PEE-EEEELLE-----------------------LRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred Chh-hHHHHHH-----------------------HHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 644 1111000 11122234455789999999999999999988764
No 20
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.50 E-value=2.7e-06 Score=67.83 Aligned_cols=109 Identities=16% Similarity=0.198 Sum_probs=61.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCC-CEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL-PHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~l-P~InVlsK~DLl 146 (236)
.+-++|||||-++ .......+ .+.. ++++++|+..-..+...-. +......+. |.+.|+||+|+.
T Consensus 52 ~~~~~DtpG~~~~------~~~~~~~~--~~ad-~ii~V~d~~~~~~~~~~~~-----~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 52 RLGFIDVPGHEKF------IKNMLAGA--GGID-LVLLVVAADEGIMPQTREH-----LEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred EEEEEECCChHHH------HHHHHhhh--hcCC-EEEEEEECCCCccHhHHHH-----HHHHHHhCCCcEEEEEECcccc
Confidence 5688999998431 12222223 2344 6899999864211222111 111222355 999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHH
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
... ...... .+ +.+.+... ....++|+|++++++++.++..+.+
T Consensus 118 ~~~-~~~~~~-------------------~~----~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 118 DED-WLELVE-------------------EE----IRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CHH-HHHHHH-------------------HH----HHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 432 111000 01 11111221 2368999999999999999988754
No 21
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.48 E-value=3.7e-06 Score=71.51 Aligned_cols=115 Identities=16% Similarity=0.236 Sum_probs=68.2
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCC-CEEEEecccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLEL-PHVNILSKMD 144 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~l-P~InVlsK~D 144 (236)
..+.++|||||-. ..+.....+. +.. ++++++|+.. ...+...- .+ ......+. |.|.|+||+|
T Consensus 83 ~~i~~iDtPG~~~------~~~~~~~~~~--~~D-~~llVvd~~~~~~~~~t~~--~l---~~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 83 RHVSFVDCPGHEI------LMATMLSGAA--VMD-GALLLIAANEPCPQPQTSE--HL---AALEIMGLKHIIIVQNKID 148 (203)
T ss_pred cEEEEEECCChHH------HHHHHHHhhh--cCC-EEEEEEECCCCCCCcchHH--HH---HHHHHcCCCcEEEEEEchh
Confidence 4579999999633 2333444442 334 5899999874 22222221 11 11123455 5788999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
+.+.. .+...+ +.+.+.+..+ ....++|+|+.++++++.|+..|.+.+..+
T Consensus 149 l~~~~-~~~~~~-----------------------~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 149 LVKEE-QALENY-----------------------EQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred ccCHH-HHHHHH-----------------------HHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 97533 111100 1111222222 236799999999999999999998876654
No 22
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.46 E-value=1.9e-06 Score=69.61 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=72.2
Q ss_pred CCEEEEeCCCceeeeeccch-HHHHHHHHhhCCCceEEEEeecCCCcc-----chhhHHHHHHHHHHHHh-------hcC
Q 026584 67 DDYLVFDCPGQIELFTHVPV-LRNFVDHLKSRNFNVCAVYLLDSQFIT-----DVTKFISGCMASLSAMV-------QLE 133 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~~~~~~~~V~LiD~~~~~-----dp~~~is~~l~sls~m~-------~l~ 133 (236)
.++.++||||+.+-+..... .+.+...++. .. ++++++|+.... ++-.-...+...+.... ..+
T Consensus 44 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~--~d-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (176)
T cd01881 44 ARIQVADIPGLIEGASEGRGLGNQFLAHIRR--AD-AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA 120 (176)
T ss_pred CeEEEEeccccchhhhcCCCccHHHHHHHhc--cC-EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 46799999998765543332 3344455532 33 689999987653 33333333333333332 258
Q ss_pred CCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 134 LPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 134 lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
.|.+.|+||+|+.... ....+. ...........++++|+.++.+++.++..+=
T Consensus 121 ~p~ivv~NK~Dl~~~~-~~~~~~--------------------------~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 121 KPVIYVLNKIDLDDAE-ELEEEL--------------------------VRELALEEGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred CCeEEEEEchhcCchh-HHHHHH--------------------------HHHHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence 9999999999997544 221110 0111122236799999999999999988764
No 23
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.42 E-value=5.1e-06 Score=76.69 Aligned_cols=150 Identities=16% Similarity=0.246 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHHH-hh--HHH--HH--HHhc--ccC-CCCEEEEeCCCceeeeec-cchHHHHHHHHhhCCCceEEEEe
Q 026584 38 PNGGLIYCMEHLED-NL--DDW--LA--EELD--NYL-DDDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYL 106 (236)
Q Consensus 38 PNGalv~~me~l~~-n~--~~w--l~--~~i~--~~~-~~~Yil~D~PGQiElf~~-~~~~~~iv~~L~~~~~~~~~V~L 106 (236)
||.|..+-++.+.. +. -+| .. -.+. .+. ..++.++||||++|=-.. ......+++.+++ .+ +++|+
T Consensus 167 PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~--a~-vlI~V 243 (335)
T PRK12299 167 PNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER--TR-LLLHL 243 (335)
T ss_pred CCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh--cC-EEEEE
Confidence 88888888888763 11 011 00 0000 011 235899999999872211 1234566666643 23 68999
Q ss_pred ecCCCccchhhHHHHHHHHHHHHhh--cCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584 107 LDSQFITDVTKFISGCMASLSAMVQ--LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE 184 (236)
Q Consensus 107 iD~~~~~dp~~~is~~l~sls~m~~--l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~ 184 (236)
+|+.....-..+ ..+.--+..... .+.|.+.|+||+|+.... .... . ....
T Consensus 244 iD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~-~~~~----------~--------~~~~------- 296 (335)
T PRK12299 244 VDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEE-EERE----------K--------RAAL------- 296 (335)
T ss_pred EcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCch-hHHH----------H--------HHHH-------
Confidence 998743321222 222222211111 378999999999997543 1100 0 0000
Q ss_pred HhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
....++ ..++|+|+.+++++++|+..|-+.+..
T Consensus 297 ~~~~~~-~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 297 ELAALG-GPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred HHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 011222 578999999999999999999887653
No 24
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.41 E-value=7.8e-06 Score=65.24 Aligned_cols=120 Identities=12% Similarity=0.162 Sum_probs=69.0
Q ss_pred CCEEEEeCCCceeeeeccchHHHH--HHHHh-hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNF--VDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~i--v~~L~-~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
.+|.++||||+-+.........++ .+.+. ..+.. ++++++|+..-..... ..+ +......+.|.+.|+||+
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d-~vi~v~d~~~~~~~~~---~~~--~~~~~~~~~~~iiv~nK~ 123 (174)
T cd01895 50 KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERAD-VVLLVIDATEGITEQD---LRI--AGLILEEGKALVIVVNKW 123 (174)
T ss_pred eeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcC-eEEEEEeCCCCcchhH---HHH--HHHHHhcCCCEEEEEecc
Confidence 468999999987663322222211 12221 12334 5888999754322221 111 122233589999999999
Q ss_pred ccccchh-HhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 144 DLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 144 DLl~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
|+..... .... ..+.+.+.+.......++|+|+++++++..+...+.++
T Consensus 124 Dl~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 124 DLVEKDSKTMKE-----------------------FKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCccHHHHHH-----------------------HHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 9975421 1111 01111111112234689999999999999999998775
No 25
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.40 E-value=2.2e-06 Score=69.06 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=71.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH---HHHHHHHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC---MASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~---l~sls~m~~l~lP~InVlsK~D 144 (236)
.+.++|||||.+.+..+... + ... -++++++|+. ++..|.... +..+. ....+.|.+.|.||+|
T Consensus 49 ~l~~~D~~g~~~~~~~~~~~------~--~~~-~~~i~v~d~~---~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D 115 (171)
T cd00157 49 NLGLWDTAGQEEYDRLRPLS------Y--PNT-DVFLICFSVD---SPSSFENVKTKWIPEIR-HYCPNVPIILVGTKID 115 (171)
T ss_pred EEEEEeCCCcccccccchhh------c--CCC-CEEEEEEECC---CHHHHHHHHHHHHHHHH-hhCCCCCEEEEEccHH
Confidence 37899999999865432221 1 123 3688889975 445554432 22222 2234799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
+.+... ....+...... . . .....+....++...|+++|+.+++++++++..|-+
T Consensus 116 l~~~~~-~~~~~~~~~~~--------v---~---~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 116 LRDDEN-TLKKLEKGKEP--------I---T---PEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhchh-hhhhcccCCCc--------c---C---HHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 986552 21111000000 0 0 011223445567779999999999999999988754
No 26
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.39 E-value=4.2e-06 Score=67.46 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=63.0
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHH-HHHhhcCCCEEEEeccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASL-SAMVQLELPHVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sl-s~m~~l~lP~InVlsK~ 143 (236)
..+.++|||||-++.. +....- .+.+ ++|+++|+.. +..+-.. .+..+ .....-+.|.+.|+||+
T Consensus 50 ~~~~l~Dt~G~~~~~~-------~~~~~~-~~~~-~~v~vvd~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 117 (167)
T cd04160 50 ARLKFWDLGGQESLRS-------LWDKYY-AECH-AIIYVIDSTD---RERFEESKSALEKVLRNEALEGVPLLILANKQ 117 (167)
T ss_pred EEEEEEECCCChhhHH-------HHHHHh-CCCC-EEEEEEECch---HHHHHHHHHHHHHHHhChhhcCCCEEEEEEcc
Confidence 4578999999976322 112221 2344 6899999854 3222221 11111 11112479999999999
Q ss_pred ccccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh--ccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 144 DLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 144 DLl~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~--d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
|+.... .++..++. .... ...-+.++++|+++++++++++..|-
T Consensus 118 D~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 118 DLPDALSVEEIKEVFQ--------------------------DKAEEIGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred ccccCCCHHHHHHHhc--------------------------cccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 985432 01111111 0011 11237899999999999999998774
No 27
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.37 E-value=4.6e-06 Score=79.30 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHHHHh-h--HHH--HHHHh--c--ccC-CCCEEEEeCCCceeeeecc--chHHHHHHHHhhCCCceEEEE
Q 026584 38 PNGGLIYCMEHLEDN-L--DDW--LAEEL--D--NYL-DDDYLVFDCPGQIELFTHV--PVLRNFVDHLKSRNFNVCAVY 105 (236)
Q Consensus 38 PNGalv~~me~l~~n-~--~~w--l~~~i--~--~~~-~~~Yil~D~PGQiElf~~~--~~~~~iv~~L~~~~~~~~~V~ 105 (236)
||.|..+-++.+... . .++ ..-.. . .+. ...+.++|+||++| -.+. ..+..+++.+++ .+ +++|
T Consensus 167 pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie-ga~~~~gLg~~fLrhier--~~-llI~ 242 (424)
T PRK12297 167 PNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE-GASEGVGLGHQFLRHIER--TR-VIVH 242 (424)
T ss_pred CCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcc-cccccchHHHHHHHHHhh--CC-EEEE
Confidence 899999888888642 1 011 00000 0 111 24689999999998 3332 234555666543 34 6899
Q ss_pred eecCCCc--cchhhHHHHHHHHHHHHh--hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026584 106 LLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS 181 (236)
Q Consensus 106 LiD~~~~--~dp~~~is~~l~sls~m~--~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~ 181 (236)
++|+... .+|..-+..+.--+.... ..+.|+|.|+||+||......+ .++
T Consensus 243 VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l-----------------------~~l--- 296 (424)
T PRK12297 243 VIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENL-----------------------EEF--- 296 (424)
T ss_pred EEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHH-----------------------HHH---
Confidence 9998653 244332222222222211 1479999999999973221000 111
Q ss_pred HHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584 182 LIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 182 l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
.+.++ ..++|+|+.++++++.|+..|.+.+.-.
T Consensus 297 ----~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 297 ----KEKLG-PKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred ----HHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 11112 5789999999999999999998876543
No 28
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.37 E-value=6.3e-06 Score=66.60 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=69.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||.+. +.+.+..- .+.. ++++++|+. ++..| +..++..+......++|.+.|.||+|+
T Consensus 53 ~l~i~D~~G~~~~-------~~~~~~~~-~~~d-~~llv~d~~---~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 120 (165)
T cd01864 53 KLQIWDTAGQERF-------RTITQSYY-RSAN-GAIIAYDIT---RRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120 (165)
T ss_pred EEEEEECCChHHH-------HHHHHHHh-ccCC-EEEEEEECc---CHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 5689999998542 12222221 2333 577888874 44444 333444444433468999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.+.. +. . .+...++...++...+++.|++++.++++++..+-+.
T Consensus 121 ~~~~-~~------~-------------------~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 121 EEQR-EV------L-------------------FEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cccc-cc------C-------------------HHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 6432 10 0 0011123345666789999999999999999988654
No 29
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.36 E-value=2.1e-06 Score=84.70 Aligned_cols=147 Identities=20% Similarity=0.259 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHHHhh---HHHHHHHhc------ccCCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeec
Q 026584 38 PNGGLIYCMEHLEDNL---DDWLAEELD------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 108 (236)
Q Consensus 38 PNGalv~~me~l~~n~---~~wl~~~i~------~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD 108 (236)
||.|.-.-++.+...- ..|---..+ .+.+.++.++|||||-++...+..-+..-+.+...+.. ++++++|
T Consensus 3 pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aD-vvI~VvD 81 (591)
T TIGR00437 3 PNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPD-LVVNVVD 81 (591)
T ss_pred CCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCC-EEEEEec
Confidence 6777777777775321 011000000 11134589999999988765543221111223223344 6899999
Q ss_pred CCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhc
Q 026584 109 SQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE 188 (236)
Q Consensus 109 ~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d 188 (236)
+......-. . ..-..+.+.|.+.|+||+|+.++. .... + .+++. +.
T Consensus 82 at~ler~l~-l------~~ql~~~~~PiIIVlNK~Dl~~~~-~i~~----d---------------~~~L~-------~~ 127 (591)
T TIGR00437 82 ASNLERNLY-L------TLQLLELGIPMILALNLVDEAEKK-GIRI----D---------------EEKLE-------ER 127 (591)
T ss_pred CCcchhhHH-H------HHHHHhcCCCEEEEEehhHHHHhC-CChh----h---------------HHHHH-------HH
Confidence 976533211 1 112345799999999999986433 1100 0 01111 11
Q ss_pred cCCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026584 189 YSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 220 (236)
Q Consensus 189 ~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e 220 (236)
++ +.++|+|+++++++++++..+-+...|++
T Consensus 128 lg-~pvv~tSA~tg~Gi~eL~~~i~~~~~~~~ 158 (591)
T TIGR00437 128 LG-VPVVPTSATEGRGIERLKDAIRKAIGLKE 158 (591)
T ss_pred cC-CCEEEEECCCCCCHHHHHHHHHHHhhcch
Confidence 22 57999999999999999999998876764
No 30
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.35 E-value=3.1e-06 Score=69.31 Aligned_cols=136 Identities=13% Similarity=0.241 Sum_probs=79.8
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcc--cCCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV 115 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~--~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp 115 (236)
||.|.-.-++.+..+. .+-. .... +... -++|||||. +.+....+.+...+++ .. ++++++|+....
T Consensus 10 ~~~GKstl~~~l~~~~-~~~~-~~~~v~~~~~--~~iDtpG~~--~~~~~~~~~~~~~~~~--ad-~il~v~d~~~~~-- 78 (158)
T PRK15467 10 VGAGKTTLFNALQGNY-TLAR-KTQAVEFNDK--GDIDTPGEY--FSHPRWYHALITTLQD--VD-MLIYVHGANDPE-- 78 (158)
T ss_pred CCCCHHHHHHHHcCCC-ccCc-cceEEEECCC--CcccCCccc--cCCHHHHHHHHHHHhc--CC-EEEEEEeCCCcc--
Confidence 6667666667765433 2111 1111 1011 169999963 3444445555555533 34 578889986332
Q ss_pred hhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeE
Q 026584 116 TKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSF 194 (236)
Q Consensus 116 ~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f 194 (236)
.++...+..+ ..+.|.+.|+||+|+.... .+ .+.+.+...+. ..+
T Consensus 79 -s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~~--~~---------------------------~~~~~~~~~~~~~p~ 124 (158)
T PRK15467 79 -SRLPAGLLDI----GVSKRQIAVISKTDMPDAD--VA---------------------------ATRKLLLETGFEEPI 124 (158)
T ss_pred -cccCHHHHhc----cCCCCeEEEEEccccCccc--HH---------------------------HHHHHHHHcCCCCCE
Confidence 2222222221 2478999999999984311 10 01122334454 689
Q ss_pred EEeeccCcccHHHHHHHHHHhhcc
Q 026584 195 MPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 195 ~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
+++|+.+++++++|+..+.+.++-
T Consensus 125 ~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 125 FELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred EEEECCCccCHHHHHHHHHHhchh
Confidence 999999999999999999887754
No 31
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.33 E-value=1.7e-05 Score=64.61 Aligned_cols=124 Identities=17% Similarity=0.159 Sum_probs=68.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
++.++||||+..+ .......++ +.. ++++++|+..-..+...- + +....+.+.|.+.|+||+|+..
T Consensus 63 ~~~liDtpG~~~~------~~~~~~~~~--~~d-~~i~v~d~~~~~~~~~~~---~--~~~~~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 63 RVNFIDTPGHEDF------SSEVIRGLS--VSD-GAILVVDANEGVQPQTRE---H--LRIAREGGLPIIVAINKIDRVG 128 (189)
T ss_pred EEEEEeCCCcHHH------HHHHHHHHH--hcC-EEEEEEECCCCCcHHHHH---H--HHHHHHCCCCeEEEEECCCCcc
Confidence 5799999997541 112223332 233 578899986533222111 1 1122236899999999999986
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.. .+..... .+...+.. .+..+.+ .....+.....++|+|+.++.++.+++..+.+.+
T Consensus 129 ~~-~~~~~~~----~~~~~~~~-~~~~~~~-----~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 129 EE-DLEEVLR----EIKELLGL-IGFISTK-----EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hh-cHHHHHH----HHHHHHcc-ccccchh-----hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 32 1211110 11111110 0000000 1112234458999999999999999999988775
No 32
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.33 E-value=4.6e-09 Score=88.93 Aligned_cols=137 Identities=26% Similarity=0.237 Sum_probs=101.8
Q ss_pred EEEecCCCCCCCCC-----CCccccccCcCHHHHHhhcCCCChHHHHHHHHHHH----HhhHHHHHHHhcccCCCCEEEE
Q 026584 2 HIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE----DNLDDWLAEELDNYLDDDYLVF 72 (236)
Q Consensus 2 ~iVNLDPa~e~~~Y-----~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~----~n~~~wl~~~i~~~~~~~Yil~ 72 (236)
.++|.+|+....++ ...+|+++...++.+|..|..||||+++.+-.... +....|.. ++.....+.+.++
T Consensus 37 t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~l~~~~~~~~~ii 115 (219)
T COG1100 37 TIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLE-ELRELAPDDVPIL 115 (219)
T ss_pred ceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHH-HHHHhCCCCceEE
Confidence 46899999988888 67789999999999999999999999987665553 34435655 3444423579999
Q ss_pred eCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 73 DCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 73 D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
++|+|++++.++.....+.+.++ .+.++..+......+..+.+. ++..|++. +..|.|+.+.|.++.
T Consensus 116 lv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~-~~~~~v~~~~~~~~~ 182 (219)
T COG1100 116 LVGNKIDLFDEQSSSEEILNQLN-----REVVLLVLAPKAVLPEVANPA-LLETSAKS-LTGPNVNELFKELLR 182 (219)
T ss_pred EEecccccccchhHHHHHHhhhh-----cCcchhhhHhHHhhhhhcccc-eeEeeccc-CCCcCHHHHHHHHHH
Confidence 99999999999999988887773 235666777766666666665 55555544 566677666666653
No 33
>PRK15494 era GTPase Era; Provisional
Probab=98.33 E-value=1.1e-05 Score=74.41 Aligned_cols=150 Identities=17% Similarity=0.244 Sum_probs=88.1
Q ss_pred ChHHHHHHHHHHHH-hhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchHHHHHHHHh-h-CCCceEEE
Q 026584 38 PNGGLIYCMEHLED-NLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-S-RNFNVCAV 104 (236)
Q Consensus 38 PNGalv~~me~l~~-n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~-~-~~~~~~~V 104 (236)
||.|.-+-++.|.. ++ .....+.+. ....+.+++|||||.+-+.. ..+.+.+... . .+.. +++
T Consensus 61 ~nvGKSTLin~l~~~k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~--l~~~~~r~~~~~l~~aD-vil 136 (339)
T PRK15494 61 PNSGKSTLLNRIIGEKL-SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS--LEKAMVRCAWSSLHSAD-LVL 136 (339)
T ss_pred CCCCHHHHHHHHhCCce-eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc--HHHHHHHHHHHHhhhCC-EEE
Confidence 88999999988874 33 222222221 11346789999999875532 1222222211 1 2344 578
Q ss_pred EeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584 105 YLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI 183 (236)
Q Consensus 105 ~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~ 183 (236)
+++|+... .+....+ +...-..+.|.|.|+||+|+.... +. .+ .
T Consensus 137 ~VvD~~~s~~~~~~~i------l~~l~~~~~p~IlViNKiDl~~~~--~~--------~~----~--------------- 181 (339)
T PRK15494 137 LIIDSLKSFDDITHNI------LDKLRSLNIVPIFLLNKIDIESKY--LN--------DI----K--------------- 181 (339)
T ss_pred EEEECCCCCCHHHHHH------HHHHHhcCCCEEEEEEhhcCcccc--HH--------HH----H---------------
Confidence 89997542 2222222 122234578999999999985321 11 00 0
Q ss_pred HHhhcc-CCeeEEEeeccCcccHHHHHHHHHHhhcccccCCCCC
Q 026584 184 ELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKI 226 (236)
Q Consensus 184 ~li~d~-~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~~~~ 226 (236)
+.+... ....++|+|+.++++++.|+..|-+.+..|+=.-|++
T Consensus 182 ~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~ 225 (339)
T PRK15494 182 AFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAED 225 (339)
T ss_pred HHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCC
Confidence 111112 2367999999999999999999999888775554443
No 34
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.33 E-value=1.3e-05 Score=64.28 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=66.6
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.++.++|||||.++... +. ..+. ... ++++++|+..-..+..+-. +..+.+.+.|.+.|+||+|+.
T Consensus 50 ~~~~iiDtpG~~~~~~~----~~--~~~~--~~d-~il~v~d~~~~~~~~~~~~-----~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 50 PGITFIDTPGHEAFTNM----RA--RGAS--LTD-IAILVVAADDGVMPQTIEA-----IKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred ceEEEEeCCCcHHHHHH----HH--HHHh--hcC-EEEEEEECCCCccHHHHHH-----HHHHHHcCCCEEEEEEceecc
Confidence 36899999998553211 11 1121 233 5788999865333333322 223345799999999999986
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
... .. .+...+. ++.. ...+..+ -..++|+|+.+++++..|+..|.+..
T Consensus 116 ~~~--~~--------~~~~~~~--------~~~~---~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 116 NAN--PE--------RVKNELS--------ELGL---QGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred ccc--HH--------HHHHHHH--------Hhhc---cccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 422 00 0101110 0000 0011222 26899999999999999999987643
No 35
>CHL00071 tufA elongation factor Tu
Probab=98.31 E-value=9.8e-06 Score=76.42 Aligned_cols=112 Identities=20% Similarity=0.311 Sum_probs=67.5
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchh-hHHHHHHHHHHHHhhcCCCE-EEEecccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPH-VNILSKMD 144 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~-InVlsK~D 144 (236)
.+|.++||||. ++.++..+..+.. .. ++++++|+..--.+. .-+ +.....+++|+ |.|+||+|
T Consensus 75 ~~~~~iDtPGh------~~~~~~~~~~~~~--~D-~~ilVvda~~g~~~qt~~~------~~~~~~~g~~~iIvvvNK~D 139 (409)
T CHL00071 75 RHYAHVDCPGH------ADYVKNMITGAAQ--MD-GAILVVSAADGPMPQTKEH------ILLAKQVGVPNIVVFLNKED 139 (409)
T ss_pred eEEEEEECCCh------HHHHHHHHHHHHh--CC-EEEEEEECCCCCcHHHHHH------HHHHHHcCCCEEEEEEEccC
Confidence 46899999993 4445556666643 34 588999987432222 111 22334578995 47899999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCcc-----------------
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKES----------------- 203 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~----------------- 203 (236)
+.... +..+ .+.+.+.+++..++ .+.|+|+|+.++.
T Consensus 140 ~~~~~-~~~~----------------------~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~ 196 (409)
T CHL00071 140 QVDDE-ELLE----------------------LVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWV 196 (409)
T ss_pred CCCHH-HHHH----------------------HHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchh
Confidence 97543 2211 11112222333333 3789999998876
Q ss_pred -cHHHHHHHHHHhh
Q 026584 204 -SIRYVLSQIDNCI 216 (236)
Q Consensus 204 -~i~~L~~~Id~~~ 216 (236)
++..|+.+|++..
T Consensus 197 ~~~~~ll~~l~~~~ 210 (409)
T CHL00071 197 DKIYNLMDAVDSYI 210 (409)
T ss_pred hhHHHHHHHHHhhC
Confidence 3567888888754
No 36
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.31 E-value=1.1e-05 Score=75.73 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=70.0
Q ss_pred CCEEEEeCCCceeeeeccchHH-----HHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEec
Q 026584 67 DDYLVFDCPGQIELFTHVPVLR-----NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 141 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~-----~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVls 141 (236)
..|.++||||+..--....... +-.+.++. .. ++++++|+..-....+ .-+ +....+.+.|.|.|+|
T Consensus 220 ~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~--ad-~~ilV~D~~~~~~~~~---~~~--~~~~~~~~~~iiiv~N 291 (429)
T TIGR03594 220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIER--AD-VVLLVLDATEGITEQD---LRI--AGLILEAGKALVIVVN 291 (429)
T ss_pred cEEEEEECCCccccccchhhHHHHHHHHHHHHHHh--CC-EEEEEEECCCCccHHH---HHH--HHHHHHcCCcEEEEEE
Confidence 3689999999754221111111 11223322 33 6899999864222222 111 2223446899999999
Q ss_pred ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
|+|++.....++. +.+.+.+.+...+...++++|+.++.++.+++..+.+...
T Consensus 292 K~Dl~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 292 KWDLVKDEKTREE-----------------------FKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CcccCCCHHHHHH-----------------------HHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999832211211 1111222223334578999999999999999999888643
No 37
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.30 E-value=9.5e-06 Score=64.06 Aligned_cols=109 Identities=10% Similarity=0.101 Sum_probs=65.3
Q ss_pred CCEEEEeCCCceeeee-ccchHHH-HHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 67 DDYLVFDCPGQIELFT-HVPVLRN-FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~-~~~~~~~-iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
..+.++||||+-+.-. ....+.+ ....+. +.. ++++++|+..-...... . ....+-+.+.|.+.|+||+|
T Consensus 45 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~--~~d-~ii~v~d~~~~~~~~~~---~--~~~~~~~~~~piiiv~nK~D 116 (157)
T cd01894 45 REFILIDTGGIEPDDEGISKEIREQAELAIE--EAD-VILFVVDGREGLTPADE---E--IAKYLRKSKKPVILVVNKVD 116 (157)
T ss_pred eEEEEEECCCCCCchhHHHHHHHHHHHHHHH--hCC-EEEEEEeccccCCccHH---H--HHHHHHhcCCCEEEEEECcc
Confidence 3578999999876432 1111111 112232 233 58999998642222111 1 12233456899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
+.... .. .+.+...+...++++|+.+++++++++..|-+
T Consensus 117 ~~~~~-~~------------------------------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 117 NIKEE-DE------------------------------AAEFYSLGFGEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred cCChH-HH------------------------------HHHHHhcCCCCeEEEecccCCCHHHHHHHHHh
Confidence 96543 11 01112334447899999999999999988764
No 38
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.30 E-value=1.8e-05 Score=68.92 Aligned_cols=131 Identities=13% Similarity=0.121 Sum_probs=70.0
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
...+-++||||+ ....+..+..+...... ++++++|+..- .....-+ +......++|++.|+||+|
T Consensus 83 ~~~i~liDtpG~------~~~~~~~~~~~~~~~~D-~~llVvda~~g~~~~d~~~------l~~l~~~~ip~ivvvNK~D 149 (224)
T cd04165 83 SKLVTFIDLAGH------ERYLKTTLFGLTGYAPD-YAMLVVAANAGIIGMTKEH------LGLALALNIPVFVVVTKID 149 (224)
T ss_pred CcEEEEEECCCc------HHHHHHHHHhhcccCCC-EEEEEEECCCCCcHHHHHH------HHHHHHcCCCEEEEEECcc
Confidence 346899999994 33444555555322223 57889997542 2222222 2334567899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHH----HHHHHH--HHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQF----AKLNKS--LIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~----~~l~~~--l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
+++.. .+.+.+. .+...+....-.+. +..... .+.-..--..+.++++|+.++++++.|.+.+..
T Consensus 150 ~~~~~-~~~~~~~----~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPAN-ILQETLK----DLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHH-HHHHHHH----HHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 97643 2322111 11111110000000 000000 001111122368999999999999999998864
No 39
>PRK12735 elongation factor Tu; Reviewed
Probab=98.28 E-value=1.1e-05 Score=75.74 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=69.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE-Eeccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN-ILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In-VlsK~DL 145 (236)
.+|.++||||+- +.++.....+. +.. ++++++|+..-..+... -.+.....+++|++. |+||+|+
T Consensus 75 ~~i~~iDtPGh~------~f~~~~~~~~~--~aD-~~llVvda~~g~~~qt~-----e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 75 RHYAHVDCPGHA------DYVKNMITGAA--QMD-GAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred cEEEEEECCCHH------HHHHHHHhhhc--cCC-EEEEEEECCCCCchhHH-----HHHHHHHHcCCCeEEEEEEecCC
Confidence 468999999963 33344444442 334 58889998642222211 011223357899885 6999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCc----------ccHHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKE----------SSIRYVLSQ 211 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~----------~~i~~L~~~ 211 (236)
..++ +.. ..+...+..++..++. +.|+|+|+.++ +++..|+.+
T Consensus 141 ~~~~-~~~----------------------~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~ 197 (396)
T PRK12735 141 VDDE-ELL----------------------ELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDA 197 (396)
T ss_pred cchH-HHH----------------------HHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHH
Confidence 7533 111 1111122233444443 78999999998 478999999
Q ss_pred HHHhhc
Q 026584 212 IDNCIQ 217 (236)
Q Consensus 212 Id~~~~ 217 (236)
+++.+.
T Consensus 198 l~~~~~ 203 (396)
T PRK12735 198 VDSYIP 203 (396)
T ss_pred HHhcCC
Confidence 998765
No 40
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.28 E-value=1.4e-05 Score=64.33 Aligned_cols=116 Identities=14% Similarity=0.268 Sum_probs=65.1
Q ss_pred CEEEEeCCCceeeeec-cchH-HHHHHHHhhCCCceEEEEeecCCCccc--hhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 68 DYLVFDCPGQIELFTH-VPVL-RNFVDHLKSRNFNVCAVYLLDSQFITD--VTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~-~~~~-~~iv~~L~~~~~~~~~V~LiD~~~~~d--p~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
++.|+|||||.+-..+ +... ...+..+.. ..-++++++|+..-.. ... ...++-.+.... -+.|.|.|+||+
T Consensus 48 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~--~~d~~l~v~d~~~~~~~~~~~-~~~~~~~l~~~~-~~~pvilv~NK~ 123 (168)
T cd01897 48 RWQVIDTPGLLDRPLEERNTIEMQAITALAH--LRAAVLFLFDPSETCGYSLEE-QLSLFEEIKPLF-KNKPVIVVLNKI 123 (168)
T ss_pred EEEEEECCCcCCccccCCchHHHHHHHHHHh--ccCcEEEEEeCCcccccchHH-HHHHHHHHHhhc-CcCCeEEEEEcc
Confidence 6799999998542111 1111 122222321 1226789999864321 111 112222222111 289999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
|+.... .... ..+ ........+++.|+++++++++++..+-+.+
T Consensus 124 Dl~~~~-~~~~--------------------~~~--------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 124 DLLTFE-DLSE--------------------IEE--------EEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCchh-hHHH--------------------HHH--------hhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 996543 1110 000 1122336799999999999999999887653
No 41
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.26 E-value=1e-05 Score=78.30 Aligned_cols=150 Identities=18% Similarity=0.247 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHHh-h--HHHHHHHhc------ccCCCCEEEEeCCCceeeee-ccchHHHHHHHHhhCCCceEEEEee
Q 026584 38 PNGGLIYCMEHLEDN-L--DDWLAEELD------NYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLL 107 (236)
Q Consensus 38 PNGalv~~me~l~~n-~--~~wl~~~i~------~~~~~~Yil~D~PGQiElf~-~~~~~~~iv~~L~~~~~~~~~V~Li 107 (236)
||.|..+-++.|... . .+|--..+. .+.+..|.++||||++|=-. ....+..+++.+.+ .. ++||++
T Consensus 168 PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier--ad-vLv~VV 244 (500)
T PRK12296 168 PSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER--CA-VLVHVV 244 (500)
T ss_pred CCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh--cC-EEEEEE
Confidence 899888888888631 1 011000111 11134689999999886321 11223445555533 33 689999
Q ss_pred cCCCcc---chhhHHHHHHHHHHHHh-----------hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchh
Q 026584 108 DSQFIT---DVTKFISGCMASLSAMV-----------QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAP 173 (236)
Q Consensus 108 D~~~~~---dp~~~is~~l~sls~m~-----------~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~ 173 (236)
|+.... +|-.-+..+.--+.... ..+.|.|.|+||+|+.... ++... +.
T Consensus 245 D~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~-el~e~-----------l~----- 307 (500)
T PRK12296 245 DCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR-ELAEF-----------VR----- 307 (500)
T ss_pred CCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-HHHHH-----------HH-----
Confidence 987542 34332222222222221 2479999999999986432 11110 00
Q ss_pred HHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 174 QFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 174 ~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
+.+...+ ..++|+|+.++++++.|+..+-+.+.-
T Consensus 308 ----------~~l~~~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 308 ----------PELEARG-WPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred ----------HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1112223 579999999999999999988876644
No 42
>PRK12736 elongation factor Tu; Reviewed
Probab=98.25 E-value=1.9e-05 Score=74.09 Aligned_cols=114 Identities=21% Similarity=0.347 Sum_probs=68.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEeccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~DL 145 (236)
.+|.++||||+-+ .++..+..+. ... ++++++|+..-..+...- .+.....+++|+ |.|+||+|+
T Consensus 75 ~~i~~iDtPGh~~------f~~~~~~~~~--~~d-~~llVvd~~~g~~~~t~~-----~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 75 RHYAHVDCPGHAD------YVKNMITGAA--QMD-GAILVVAATDGPMPQTRE-----HILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred cEEEEEECCCHHH------HHHHHHHHHh--hCC-EEEEEEECCCCCchhHHH-----HHHHHHHcCCCEEEEEEEecCC
Confidence 4689999999643 3344445553 233 588899986522232211 122234579996 578999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCc--------ccHHHHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKE--------SSIRYVLSQID 213 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~--------~~i~~L~~~Id 213 (236)
.+++ ++.+ .+.+.+.+++..++ .+.++|+|+.++ .++..|+..++
T Consensus 141 ~~~~-~~~~----------------------~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~ 197 (394)
T PRK12736 141 VDDE-ELLE----------------------LVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVD 197 (394)
T ss_pred cchH-HHHH----------------------HHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHH
Confidence 7433 1111 01111222233333 378999999997 36889999999
Q ss_pred Hhhc
Q 026584 214 NCIQ 217 (236)
Q Consensus 214 ~~~~ 217 (236)
+.++
T Consensus 198 ~~lp 201 (394)
T PRK12736 198 EYIP 201 (394)
T ss_pred HhCC
Confidence 8765
No 43
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.24 E-value=3.5e-05 Score=62.82 Aligned_cols=108 Identities=14% Similarity=0.233 Sum_probs=62.6
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
..++|||||.++. . .....++ +.. ++++++|+..-.....+ ..+. .....+.|.+.|+||+|+...
T Consensus 69 ~~l~Dt~G~~~~~---~---~~~~~~~--~ad-~~i~v~D~~~~~~~~~~-~~~~----~~~~~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 69 LNLIDTPGHVDFS---Y---EVSRSLA--ACE-GALLLVDATQGVEAQTL-ANFY----LALENNLEIIPVINKIDLPSA 134 (179)
T ss_pred EEEEECCCChhhH---H---HHHHHHH--hcC-eEEEEEECCCCccHhhH-HHHH----HHHHcCCCEEEEEECCCCCcC
Confidence 4689999997631 1 1122332 233 58999998642222222 1111 122468999999999998532
Q ss_pred hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
. .. .. .+++++.+ ......++++|+.+++++++|+..+-+.+
T Consensus 135 ~--~~--------~~---------------~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 135 D--PE--------RV---------------KQQIEDVL-GLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred C--HH--------HH---------------HHHHHHHh-CCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 1 00 00 01111111 11113589999999999999999987654
No 44
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.23 E-value=1e-05 Score=65.75 Aligned_cols=121 Identities=12% Similarity=0.153 Sum_probs=71.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+.++|||||-+...- +.. .+ .+.. +++++.|.. ++.+|-.. ++-.+. ...-+.|.|.|.||+|
T Consensus 47 ~~~i~Dt~G~~~~~~~----~~~--~~--~~~d-~~ilv~d~~---~~~s~~~~~~~~~~~i~-~~~~~~piilv~nK~D 113 (174)
T smart00174 47 ELGLWDTAGQEDYDRL----RPL--SY--PDTD-VFLICFSVD---SPASFENVKEKWYPEVK-HFCPNTPIILVGTKLD 113 (174)
T ss_pred EEEEEECCCCcccchh----chh--hc--CCCC-EEEEEEECC---CHHHHHHHHHHHHHHHH-hhCCCCCEEEEecChh
Confidence 3678999999764321 111 12 2333 688888965 44444332 222222 2234899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+.........+....... . - .+...++...++...|+++|+++++++++++..+-+.
T Consensus 114 l~~~~~~~~~~~~~~~~~--------v---~---~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 114 LREDKSTLRELSKQKQEP--------V---T---YEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred hhhChhhhhhhhcccCCC--------c---c---HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 976442222222110000 0 0 1112244556677789999999999999999987654
No 45
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.22 E-value=1.9e-05 Score=75.84 Aligned_cols=115 Identities=21% Similarity=0.318 Sum_probs=70.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCE-EEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPH-VNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~DL 145 (236)
.+.++|||| |...++.++..+. ... ++++++|+.- ...|..- - .+.+...+++|+ |.|+||+|+
T Consensus 118 ~i~~IDtPG------H~~fi~~m~~g~~--~~D-~alLVVda~~g~~~~qT~-e----hl~i~~~lgi~~iIVvlNKiDl 183 (460)
T PTZ00327 118 HVSFVDCPG------HDILMATMLNGAA--VMD-AALLLIAANESCPQPQTS-E----HLAAVEIMKLKHIIILQNKIDL 183 (460)
T ss_pred eEeeeeCCC------HHHHHHHHHHHHh--hCC-EEEEEEECCCCccchhhH-H----HHHHHHHcCCCcEEEEEecccc
Confidence 589999999 4555666666664 344 4788999974 2223211 0 112223367765 679999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.... .+++.++ + ++++.+ .. ......++|+|+.++++++.|+..|++.+..
T Consensus 184 v~~~-~~~~~~~--------e--------i~~~l~---~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 184 VKEA-QAQDQYE--------E--------IRNFVK---GT--IADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred cCHH-HHHHHHH--------H--------HHHHHH---hh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 7533 2211111 1 111111 11 0123799999999999999999999976543
No 46
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.22 E-value=9.8e-06 Score=66.33 Aligned_cols=118 Identities=10% Similarity=0.130 Sum_probs=68.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+-++|||||-++...++. .+ .+.. +++++.|.. ++.+|-.. ++-.+. ...-+.|.+.|.||+|
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~------~~--~~a~-~~i~v~d~~---~~~sf~~~~~~~~~~~~-~~~~~~piilv~nK~D 115 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPL------CY--PDTD-VFLLCFSVV---NPSSFQNISEKWIPEIR-KHNPKAPIILVGTQAD 115 (173)
T ss_pred EEEEEECCCChhhcccccc------cc--CCCc-EEEEEEECC---CHHHHHHHHHHHHHHHH-hhCCCCCEEEEeeChh
Confidence 4678999999765433221 12 2344 678888864 55555332 222222 2223799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 212 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I 212 (236)
+.+..+.+..+...... .. .. +....+...++...|+++|++++.++++++..+
T Consensus 116 l~~~~~~~~~~~~~~~~--------~v--~~----~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 116 LRTDVNVLIQLARYGEK--------PV--SQ----SRAKALAEKIGACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred hccChhHHHHHhhcCCC--------Cc--CH----HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence 97654322222221000 00 00 011123345566799999999999999998765
No 47
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.21 E-value=1.9e-05 Score=65.99 Aligned_cols=114 Identities=14% Similarity=0.251 Sum_probs=67.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+-|+|||||-.+. .+....- .+.. ++++++|+........ +..++..+....+-+.|.+.|.||+|+..
T Consensus 51 ~~~i~Dt~G~~~~~-------~~~~~~~-~~ad-~~i~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 51 KLQIWDTAGQERFR-------SVTHAYY-RDAH-ALLLLYDITNKASFDN-IRAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred EEEEEeCCCcHHHH-------HhhHHHc-cCCC-EEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 35788999984422 1112221 2334 6889999765332222 23333334333445799999999999964
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.. .... . ... .+...++ ..|+++|+.++++++.++..|-+.+.-
T Consensus 121 ~~-~~~~------~------------~~~-------~l~~~~~-~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 121 ER-VVKR------E------------DGE-------RLAKEYG-VPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred cc-ccCH------H------------HHH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 32 1100 0 001 1223334 479999999999999999999876543
No 48
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.21 E-value=2.4e-05 Score=77.25 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=73.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||-. |. .+..+. ..... ++++++|+..-..+..+-+ +......++|.|.|+||+|+..
T Consensus 70 ~l~~iDTpG~e~-f~------~l~~~~-~~~aD-~~IlVvD~~~g~~~qt~e~-----i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 70 GLLFIDTPGHEA-FT------NLRKRG-GALAD-LAILIVDINEGFKPQTQEA-----LNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred cEEEEECCCcHh-HH------HHHHHH-HhhCC-EEEEEEECCcCCCHhHHHH-----HHHHHHcCCCEEEEEECCCccc
Confidence 488999999732 32 111111 12233 6888999875444555433 2233456999999999999974
Q ss_pred chhH--hhhhccccHHHHHHHhhhcchhHHHHHH---------HHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHh
Q 026584 148 NKKE--IEDYLNPESQFLLSELNQHMAPQFAKLN---------KSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 148 ~~~~--l~~~l~~~~~~l~~~l~~~~~~~~~~l~---------~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.... -..|++. ....-..+.....+++..+. ..+...+++|+. +.++|+|+.+++++.+|+..+...
T Consensus 136 ~~~~~~~~~f~e~-sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 136 GWRSHEGRPFMES-FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred hhhhccCchHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 2100 0112110 00000001111111222222 222233456765 899999999999999999988654
Q ss_pred h
Q 026584 216 I 216 (236)
Q Consensus 216 ~ 216 (236)
.
T Consensus 215 ~ 215 (590)
T TIGR00491 215 A 215 (590)
T ss_pred H
Confidence 3
No 49
>PRK00049 elongation factor Tu; Reviewed
Probab=98.19 E-value=2.4e-05 Score=73.54 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=68.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEE-EEeccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV-NILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~I-nVlsK~DL 145 (236)
.+|.++||||+. +.++.....+. ... ++++++|+..-..+...- .+.....++.|++ .|+||+|+
T Consensus 75 ~~i~~iDtPG~~------~f~~~~~~~~~--~aD-~~llVVDa~~g~~~qt~~-----~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 75 RHYAHVDCPGHA------DYVKNMITGAA--QMD-GAILVVSAADGPMPQTRE-----HILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred eEEEEEECCCHH------HHHHHHHhhhc--cCC-EEEEEEECCCCCchHHHH-----HHHHHHHcCCCEEEEEEeecCC
Confidence 468999999953 33344444442 344 588899986532232211 1222344789997 57999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCcc----------cHHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKES----------SIRYVLSQ 211 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~----------~i~~L~~~ 211 (236)
.++. +.. ..+...+.+++..++ -+.|+|+|+.++. ++..|+.+
T Consensus 141 ~~~~-~~~----------------------~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~ 197 (396)
T PRK00049 141 VDDE-ELL----------------------ELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDA 197 (396)
T ss_pred cchH-HHH----------------------HHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHH
Confidence 7533 111 111112223333333 3789999998864 67899999
Q ss_pred HHHhhc
Q 026584 212 IDNCIQ 217 (236)
Q Consensus 212 Id~~~~ 217 (236)
|+....
T Consensus 198 l~~~~~ 203 (396)
T PRK00049 198 VDSYIP 203 (396)
T ss_pred HHhcCC
Confidence 998654
No 50
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.18 E-value=2.4e-05 Score=77.64 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=70.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~DLl 146 (236)
.+-++|||||- ...+.++..+. +.. ++++++|+..--.|...-. +.....++.|+ |.|+||+|+.
T Consensus 52 ~i~~IDtPGhe------~fi~~m~~g~~--~~D-~~lLVVda~eg~~~qT~eh-----l~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 52 VLGFIDVPGHE------KFLSNMLAGVG--GID-HALLVVACDDGVMAQTREH-----LAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred EEEEEECCCHH------HHHHHHHHHhh--cCC-EEEEEEECCCCCcHHHHHH-----HHHHHHcCCCeEEEEEECCccC
Confidence 35799999972 22344444442 344 4788999865333332211 22334468897 5899999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
+.. .++.. ...+.+.+..+++ ..++|+|+.++++++.|...|++....
T Consensus 118 ~~~-~~~~v-----------------------~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 118 DEA-RIAEV-----------------------RRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred CHH-HHHHH-----------------------HHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 533 22111 1122233334443 689999999999999999999986543
No 51
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.18 E-value=2.1e-05 Score=62.84 Aligned_cols=113 Identities=16% Similarity=0.104 Sum_probs=62.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||.+. +......-+ +. -++++++|+..-.........+..........+.|.+.|.||+|+..
T Consensus 44 ~~~i~D~~G~~~~-------~~~~~~~~~-~~-~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 44 SFTVWDVGGQDKI-------RPLWKHYYE-NT-NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred EEEEEECCCChhh-------HHHHHHHhc-cC-CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 5789999998753 112222212 23 36888999874321111111111111111135899999999999975
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
.. .. +.+...+.. .......+.++++|++++.++++++..|-
T Consensus 115 ~~-~~--------~~~~~~~~~---------------~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 115 AL-SV--------SELIEKLGL---------------EKILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred cc-CH--------HHHHHhhCh---------------hhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 33 11 111111110 00111236899999999999999988774
No 52
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.16 E-value=5.9e-05 Score=62.49 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=66.9
Q ss_pred CCEEEEeCCCceeeeecc----chHHHHH-HHHhhC-CCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584 67 DDYLVFDCPGQIELFTHV----PVLRNFV-DHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 140 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~----~~~~~iv-~~L~~~-~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl 140 (236)
.++.|+||||+.. -.+. .....++ ..++.. +.. .+++++|+..-...... .+ ...+-..++|.+.|+
T Consensus 70 ~~l~l~DtpG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~---~i--~~~l~~~~~~~iiv~ 142 (196)
T PRK00454 70 DKLRLVDLPGYGY-AKVSKEEKEKWQKLIEEYLRTRENLK-GVVLLIDSRHPLKELDL---QM--IEWLKEYGIPVLIVL 142 (196)
T ss_pred CeEEEeCCCCCCC-cCCCchHHHHHHHHHHHHHHhCccce-EEEEEEecCCCCCHHHH---HH--HHHHHHcCCcEEEEE
Confidence 3678999999542 1111 1111222 223222 222 46677886542222211 11 122345789999999
Q ss_pred cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
||+|+++.. +... ....+.+.+..+ ...++|+|+.+++++++++..|-+.+.
T Consensus 143 nK~Dl~~~~-~~~~-----------------------~~~~i~~~l~~~-~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 143 TKADKLKKG-ERKK-----------------------QLKKVRKALKFG-DDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred ECcccCCHH-HHHH-----------------------HHHHHHHHHHhc-CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 999997543 1111 111222333333 367889999999999999999987653
No 53
>PRK09866 hypothetical protein; Provisional
Probab=98.15 E-value=2.7e-05 Score=77.29 Aligned_cols=115 Identities=11% Similarity=0.172 Sum_probs=70.6
Q ss_pred CCCEEEEeCCCceeeeec-cc-hHHHHHHHHhhCCCceEEEEeecCCCccchhh-HHHHHHHHHHHHhhcC--CCEEEEe
Q 026584 66 DDDYLVFDCPGQIELFTH-VP-VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLE--LPHVNIL 140 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~-~~-~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~-~is~~l~sls~m~~l~--lP~InVl 140 (236)
..+++++|||| +... +. ....+.+.+... . +++|++|+.....+.+ .+. ..+-+.+ .|++.|+
T Consensus 229 ~~QIIFVDTPG---Ihk~~~~~L~k~M~eqL~eA--D-vVLFVVDat~~~s~~DeeIl------k~Lkk~~K~~PVILVV 296 (741)
T PRK09866 229 PGQLTLLDTPG---PNEAGQPHLQKMLNQQLARA--S-AVLAVLDYTQLKSISDEEVR------EAILAVGQSVPLYVLV 296 (741)
T ss_pred cCCEEEEECCC---CCCccchHHHHHHHHHHhhC--C-EEEEEEeCCCCCChhHHHHH------HHHHhcCCCCCEEEEE
Confidence 36789999999 5432 22 233455556433 3 6999999976444333 332 2233445 5999999
Q ss_pred cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh--ccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~--d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
||+|+.++.... .+.+ .+ .+...+. .......+|+|+..+.++++|+..|-+
T Consensus 297 NKIDl~dreedd-------kE~L------------le---~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 297 NKFDQQDRNSDD-------ADQV------------RA---LISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred EcccCCCcccch-------HHHH------------HH---HHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 999986433100 0011 00 1111111 223568999999999999999998876
No 54
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.14 E-value=3.7e-05 Score=61.46 Aligned_cols=109 Identities=12% Similarity=0.198 Sum_probs=63.8
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHH-hhcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAM-VQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m-~~l~lP~InVlsK~DL 145 (236)
+-++|||||.++-. +.+...+ +.. ++++++|+.. +..| +..++..+.-. -+-+.|.+.|.||+|+
T Consensus 52 ~~i~Dt~G~~~~~~-------~~~~~~~-~~~-~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl 119 (164)
T cd04145 52 LDILDTAGQEEFSA-------MREQYMR-TGE-GFLLVFSVTD---RGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL 119 (164)
T ss_pred EEEEECCCCcchhH-------HHHHHHh-hCC-EEEEEEECCC---HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccc
Confidence 56799999876421 2222212 233 5778888754 3333 33333332222 1247899999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+.. ... .. . ..++...++ ..++++|+++++++.+++..+=+.+
T Consensus 120 ~~~~-~~~------~~------------~-------~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 120 EHQR-KVS------RE------------E-------GQELARKLK-IPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cccc-eec------HH------------H-------HHHHHHHcC-CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 6432 110 00 0 011222344 4789999999999999998876544
No 55
>PLN03127 Elongation factor Tu; Provisional
Probab=98.14 E-value=4.7e-05 Score=72.84 Aligned_cols=113 Identities=18% Similarity=0.320 Sum_probs=66.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhh-HHHHHHHHHHHHhhcCCCE-EEEecccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELPH-VNILSKMD 144 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~-~is~~l~sls~m~~l~lP~-InVlsK~D 144 (236)
.+|.++||||+ ++.++..+..+.. .. ++++++|+..--.+.. -+ +.....+++|+ |.|+||+|
T Consensus 124 ~~i~~iDtPGh------~~f~~~~~~g~~~--aD-~allVVda~~g~~~qt~e~------l~~~~~~gip~iIvviNKiD 188 (447)
T PLN03127 124 RHYAHVDCPGH------ADYVKNMITGAAQ--MD-GGILVVSAPDGPMPQTKEH------ILLARQVGVPSLVVFLNKVD 188 (447)
T ss_pred eEEEEEECCCc------cchHHHHHHHHhh--CC-EEEEEEECCCCCchhHHHH------HHHHHHcCCCeEEEEEEeec
Confidence 36899999995 3455555555533 34 6899999864322222 12 22334578997 67899999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhc--cC--CeeEEEeecc---Ccc-------cHHHHHH
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YS--MVSFMPLDLR---KES-------SIRYVLS 210 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d--~~--lv~f~pls~~---d~~-------~i~~L~~ 210 (236)
+++.. +..+.+. ..+.+++.. |. .+.|+|+|+. +++ ++..|+.
T Consensus 189 lv~~~-~~~~~i~----------------------~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~ 245 (447)
T PLN03127 189 VVDDE-ELLELVE----------------------MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMD 245 (447)
T ss_pred cCCHH-HHHHHHH----------------------HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHH
Confidence 97533 2211110 011112221 21 3788888875 333 4788999
Q ss_pred HHHHhhc
Q 026584 211 QIDNCIQ 217 (236)
Q Consensus 211 ~Id~~~~ 217 (236)
++++.+.
T Consensus 246 ~l~~~lp 252 (447)
T PLN03127 246 AVDEYIP 252 (447)
T ss_pred HHHHhCC
Confidence 9988764
No 56
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.12 E-value=3.4e-05 Score=60.75 Aligned_cols=105 Identities=11% Similarity=0.193 Sum_probs=66.9
Q ss_pred CEEEEeCCCceeeeeccc--hHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVP--VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~--~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
++.++||||+.+.-.... ..++....+. ..+ ++++++|+......... .+... ..+.|.+.|+||+|+
T Consensus 50 ~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~v~d~~~~~~~~~~---~~~~~----~~~~~vi~v~nK~D~ 119 (157)
T cd04164 50 PVRLIDTAGIRETEDEIEKIGIERAREAIE--EAD-LVLFVIDASRGLDEEDL---EILEL----PADKPIIVVLNKSDL 119 (157)
T ss_pred EEEEEECCCcCCCcchHHHHHHHHHHHHHh--hCC-EEEEEEECCCCCCHHHH---HHHHh----hcCCCEEEEEEchhc
Confidence 578999999877543211 1222223332 334 68899998853322221 11111 468999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .. ........++++|++++.+++.++..|.+..
T Consensus 120 ~~~~-~~---------------------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 120 LPDS-EL---------------------------------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred CCcc-cc---------------------------------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 7543 10 1122236899999999999999999987653
No 57
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.11 E-value=3.9e-05 Score=72.32 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=70.0
Q ss_pred CCEEEEeCCCceeeeeccchH-----HHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEec
Q 026584 67 DDYLVFDCPGQIELFTHVPVL-----RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 141 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~-----~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVls 141 (236)
.+|.++||||+..--...... .+-.+.+.. .. ++++++|+..-....+. -+ +....+.+.|.|.|+|
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~--ad-~~ilViD~~~~~~~~~~---~i--~~~~~~~~~~~ivv~N 292 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIER--AD-VVLLVIDATEGITEQDL---RI--AGLALEAGRALVIVVN 292 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHH--CC-EEEEEEeCCCCCCHHHH---HH--HHHHHHcCCcEEEEEE
Confidence 468999999963321111111 122233432 23 68999998653222221 11 2233456899999999
Q ss_pred ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
|+|+...+ .... +.+.+...+...+...++++|+.++.++.+++..+.+..
T Consensus 293 K~Dl~~~~-~~~~-----------------------~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 293 KWDLVDEK-TMEE-----------------------FKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred CccCCCHH-HHHH-----------------------HHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99997432 1111 111222223333457999999999999999999988754
No 58
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.11 E-value=4.3e-05 Score=71.66 Aligned_cols=112 Identities=20% Similarity=0.332 Sum_probs=65.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEE-EEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV-NILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~I-nVlsK~DLl 146 (236)
.+.++|||||-. ..+..+..+. +.. ++++++|+..-..+...= .+.....+++|++ .|+||+|+.
T Consensus 76 ~~~liDtpGh~~------f~~~~~~~~~--~~D-~~ilVvda~~g~~~qt~e-----~l~~~~~~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 76 HYAHVDCPGHAD------YVKNMITGAA--QMD-GAILVVSATDGPMPQTRE-----HILLARQVGVPYIVVFLNKCDMV 141 (394)
T ss_pred EEEEEECCchHH------HHHHHHHHHh--hCC-EEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEEEecccC
Confidence 589999999743 2334444442 333 578899987522233221 1122345699987 579999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcc--------cHHHHHHHHHH
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKES--------SIRYVLSQIDN 214 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~--------~i~~L~~~Id~ 214 (236)
..+ +.. ......+.+++..++. +.++|+|+.++. ++..|+..+++
T Consensus 142 ~~~-~~~----------------------~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 142 DDE-ELL----------------------ELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred CHH-HHH----------------------HHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 543 111 0111122233444443 789999998764 45667777776
Q ss_pred hh
Q 026584 215 CI 216 (236)
Q Consensus 215 ~~ 216 (236)
..
T Consensus 199 ~~ 200 (394)
T TIGR00485 199 YI 200 (394)
T ss_pred cC
Confidence 54
No 59
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.10 E-value=2.5e-05 Score=62.67 Aligned_cols=110 Identities=14% Similarity=0.184 Sum_probs=62.4
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHH-HHHHhhcCCCEEEEeccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS-LSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~s-ls~m~~l~lP~InVlsK~DLl~ 147 (236)
+-++|||||.++... +. ..++. .+ ++++++|+.....-.. +..+... .....+.+.|.+.|.||+|+..
T Consensus 50 l~i~Dt~g~~~~~~~----~~--~~~~~--~~-~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 50 LDILDTAGQEEFSAM----RD--QYMRT--GE-GFLLVYSITDRQSFEE-IKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred EEEEECCCcccchHH----HH--HHHhh--CC-EEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 458999999774321 11 12322 33 5678888654222111 1222212 1222234789999999999864
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.. .. . .+ ...++...++ ..++++|+++++++++++..+=+.
T Consensus 120 ~~-~~----~--~~-------------------~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~ 160 (164)
T smart00173 120 ER-VV----S--TE-------------------EGKELARQWG-CPFLETSAKERVNVDEAFYDLVRE 160 (164)
T ss_pred cc-eE----c--HH-------------------HHHHHHHHcC-CEEEEeecCCCCCHHHHHHHHHHH
Confidence 32 11 0 00 0001222333 689999999999999999887553
No 60
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.09 E-value=2.4e-05 Score=67.37 Aligned_cols=106 Identities=17% Similarity=0.268 Sum_probs=60.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-------chhhHHHHHHHHHHHHhhcCC-CEEE
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-------DVTKFISGCMASLSAMVQLEL-PHVN 138 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-------dp~~~is~~l~sls~m~~l~l-P~In 138 (236)
..+.++||||+..+ .+..++.++. .. ++++++|+..-. .+.. ... +....+++. |.|.
T Consensus 77 ~~i~liDtpG~~~~------~~~~~~~~~~--~d-~~i~VvDa~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~iii 142 (219)
T cd01883 77 YRFTILDAPGHRDF------VPNMITGASQ--AD-VAVLVVDARKGEFEAGFEKGGQT-REH----ALLARTLGVKQLIV 142 (219)
T ss_pred eEEEEEECCChHHH------HHHHHHHhhh--CC-EEEEEEECCCCccccccccccch-HHH----HHHHHHcCCCeEEE
Confidence 36799999997442 2344455532 33 689999987521 1111 111 112234564 5677
Q ss_pred EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHH
Q 026584 139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIR 206 (236)
Q Consensus 139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~ 206 (236)
|+||+|+...... ...+.++...+.+.+..++. +.++|+|+.+++++.
T Consensus 143 vvNK~Dl~~~~~~--------------------~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 143 AVNKMDDVTVNWS--------------------EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEEcccccccccc--------------------HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9999999742100 01122233333344555554 789999999999986
No 61
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.09 E-value=4.6e-05 Score=65.01 Aligned_cols=106 Identities=19% Similarity=0.301 Sum_probs=59.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEeccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~DL 145 (236)
.++.|+|||||.++. ..+...++ ... ++++++|+..-......-. .....+.+.| .|.|+||+|+
T Consensus 77 ~~~~liDTpG~~~~~------~~~~~~~~--~ad-~~llVvD~~~~~~~~~~~~-----~~~~~~~~~~~iIvviNK~D~ 142 (208)
T cd04166 77 RKFIIADTPGHEQYT------RNMVTGAS--TAD-LAILLVDARKGVLEQTRRH-----SYILSLLGIRHVVVAVNKMDL 142 (208)
T ss_pred ceEEEEECCcHHHHH------HHHHHhhh--hCC-EEEEEEECCCCccHhHHHH-----HHHHHHcCCCcEEEEEEchhc
Confidence 478999999975421 23334443 233 5899999864222111110 1112235666 5668999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYV 208 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L 208 (236)
.....+ .+.+....+.+++..++. ..++|+|+.+++++.+.
T Consensus 143 ~~~~~~----------------------~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 143 VDYSEE----------------------VFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred ccCCHH----------------------HHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 642210 111112222233444443 67999999999998753
No 62
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.08 E-value=7.8e-05 Score=59.63 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=65.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|+|||||-+.... +. ..+ .+.. ++++++|+. ++..+- ..++.++....+-+.|.+.|.||+|+
T Consensus 51 ~~~i~D~~G~~~~~~~----~~--~~~--~~~~-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 51 KFEIWDTAGQERYRSL----AP--MYY--RGAA-AAIVVYDIT---SEESFEKAKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred EEEEEeCCchHHHHHH----HH--HHh--ccCC-EEEEEEECc---CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 4678999998542111 11 122 2344 588999976 444442 23333333333357889999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .. +... .. ++...++ +.++++|++++.++.+++..+-+.+
T Consensus 119 ~~~~-~~------~~~~------------~~-------~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 119 ESKR-QV------STEE------------AQ-------EYADENG-LLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred cccC-cC------CHHH------------HH-------HHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6422 00 0000 01 1122333 6799999999999999999987654
No 63
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.08 E-value=5.6e-05 Score=74.57 Aligned_cols=114 Identities=15% Similarity=0.217 Sum_probs=71.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-EEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~DLl 146 (236)
.+-++||||+ ....+..+..+ .+.. ++++++|+..-..|..+-. +..+-.+++| .|.|+||+|+.
T Consensus 51 ~v~~iDtPGh------e~f~~~~~~g~--~~aD-~aILVVDa~~G~~~qT~eh-----l~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 51 RLGFIDVPGH------EKFISNAIAGG--GGID-AALLVVDADEGVMTQTGEH-----LAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEEEECCCH------HHHHHHHHhhh--ccCC-EEEEEEECCCCCcHHHHHH-----HHHHHHcCCCeEEEEEECCCCC
Confidence 4679999995 22233444444 2344 5888999865322333322 2233457999 88889999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC---CeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS---MVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~---lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
+.. .+.. ..+.+.+++..++ -..++|+|+.+++++..+...+.+....-
T Consensus 117 ~~~-~~~~-----------------------~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 117 NEE-EIKR-----------------------TEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred CHH-HHHH-----------------------HHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 533 1111 1112223333443 36899999999999999999988776544
No 64
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.08 E-value=5.7e-05 Score=60.67 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=60.0
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHH-HHHhhcCCCEEEEecccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKMD 144 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sl-s~m~~l~lP~InVlsK~D 144 (236)
-.+-++|||||-++ +.+.. .+ .+.+ ++++++|+......... ...+..+ .....-+.|.+.|+||+|
T Consensus 43 ~~~~i~Dt~G~~~~-------~~~~~~~~--~~~~-~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D 111 (158)
T cd04151 43 LKFQVWDLGGQTSI-------RPYWRCYY--SNTD-AIIYVVDSTDRDRLGTA-KEELHAMLEEEELKGAVLLVFANKQD 111 (158)
T ss_pred EEEEEEECCCCHHH-------HHHHHHHh--cCCC-EEEEEEECCCHHHHHHH-HHHHHHHHhchhhcCCcEEEEEeCCC
Confidence 35789999998542 11112 22 2344 58999997643221111 1111111 111113789999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHH
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id 213 (236)
+.+.. ... .+...+. ...+. -..++|+|+.+++++++++..+-
T Consensus 112 l~~~~-~~~--------~i~~~~~-----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 112 MPGAL-SEA--------EISEKLG-----------------LSELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CCCCC-CHH--------HHHHHhC-----------------ccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 86432 000 0000000 00111 14799999999999999998763
No 65
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=2.8e-05 Score=73.13 Aligned_cols=105 Identities=20% Similarity=0.356 Sum_probs=76.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-------cchhhHHHHHHHHHHHHhhcCCCEEEE-
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-------TDVTKFISGCMASLSAMVQLELPHVNI- 139 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-------~dp~~~is~~l~sls~m~~l~lP~InV- 139 (236)
.|=|+|||| |++..++.+.-.++.+ ++|+++||..- ..+...-.++|.. .+++.++-|
T Consensus 86 ~~tIiDaPG------HrdFvknmItGasqAD---~aVLVV~a~~~efE~g~~~~gQtrEH~~La~-----tlGi~~lIVa 151 (428)
T COG5256 86 NFTIIDAPG------HRDFVKNMITGASQAD---VAVLVVDARDGEFEAGFGVGGQTREHAFLAR-----TLGIKQLIVA 151 (428)
T ss_pred eEEEeeCCc------hHHHHHHhhcchhhcc---EEEEEEECCCCccccccccCCchhHHHHHHH-----hcCCceEEEE
Confidence 468999999 8898888888775544 69999999765 4555555444322 268999887
Q ss_pred ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHHH
Q 026584 140 LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRYV 208 (236)
Q Consensus 140 lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~L 208 (236)
+||+|+++-. ..+|.++...+..++..++. +.|+|+|+-.++++...
T Consensus 152 vNKMD~v~wd----------------------e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 152 VNKMDLVSWD----------------------EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEcccccccC----------------------HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 8999998622 13555555666666767765 68999999999998753
No 66
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.05 E-value=6.3e-05 Score=61.11 Aligned_cols=113 Identities=9% Similarity=0.113 Sum_probs=66.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DL 145 (236)
++.++||||+-+... . ....++ +.. ++++++|+. ++..|-.. ......-..+.+.|.+.|.||+|+
T Consensus 48 ~~~i~Dt~G~~~~~~---~---~~~~~~--~ad-~~ilv~d~~---~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl 115 (166)
T cd01893 48 PTTIVDTSSRPQDRA---N---LAAEIR--KAN-VICLVYSVD---RPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDL 115 (166)
T ss_pred EEEEEeCCCchhhhH---H---Hhhhcc--cCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 468999999765321 1 112232 234 467788854 55555442 222222222348999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHHhh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+.. ... .+ ...+..+...+.. ..+++.|+.++.++++++..+.++.
T Consensus 116 ~~~~-~~~--------~~---------------~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 116 RDGS-SQA--------GL---------------EEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred cccc-chh--------HH---------------HHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 6543 100 00 0001111222322 4799999999999999999998865
No 67
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.05 E-value=4.9e-05 Score=58.82 Aligned_cols=109 Identities=14% Similarity=0.220 Sum_probs=63.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
...++|||||.+..... ....+ +. ...+..+|.... .+........+..+.-....+.|.+.|+||+|+.
T Consensus 51 ~~~~~D~~G~~~~~~~~-------~~~~~-~~-~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIR-------RLYYR-AV-ESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLR 121 (161)
T ss_pred EEEEEECCCcccchHHH-------HHHHh-hh-hEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCC
Confidence 35789999987643321 11111 11 235556666554 3333333233333332233389999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
... .. ......+...+...++|+|+.+++++..++..|.
T Consensus 122 ~~~--~~--------------------------~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 122 DAK--LK--------------------------THVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred cch--hh--------------------------HHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 432 00 0111223344456799999999999999998875
No 68
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.04 E-value=2.5e-05 Score=61.57 Aligned_cols=103 Identities=12% Similarity=0.178 Sum_probs=59.1
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 149 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~ 149 (236)
-++|||||. ..+....+.+...+ .+.. ++++++|+..-. .+....+.. .++.|.|.|+||+||.+..
T Consensus 38 ~~iDt~G~~--~~~~~~~~~~~~~~--~~ad-~vilv~d~~~~~---s~~~~~~~~-----~~~~p~ilv~NK~Dl~~~~ 104 (142)
T TIGR02528 38 GAIDTPGEY--VENRRLYSALIVTA--ADAD-VIALVQSATDPE---SRFPPGFAS-----IFVKPVIGLVTKIDLAEAD 104 (142)
T ss_pred eeecCchhh--hhhHHHHHHHHHHh--hcCC-EEEEEecCCCCC---cCCChhHHH-----hccCCeEEEEEeeccCCcc
Confidence 689999982 12222233333333 2344 588889974322 222111111 1245999999999986422
Q ss_pred hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHH
Q 026584 150 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 212 (236)
Q Consensus 150 ~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~I 212 (236)
. .. + ...+..+..+...++++|+++++++++++..+
T Consensus 105 -~-------~~----~---------------~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 105 -V-------DI----E---------------RAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred -c-------CH----H---------------HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 0 00 0 00122233455578999999999999999876
No 69
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.03 E-value=4.2e-05 Score=61.61 Aligned_cols=112 Identities=13% Similarity=0.239 Sum_probs=63.7
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchh---hHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT---KFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~---~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
+-++|||||..... . ....++ +.. ++++++|+....... .+...++..+......+.|.+.|+||+|+
T Consensus 51 ~~~~D~~g~~~~~~---~---~~~~~~--~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 121 (172)
T cd01862 51 LQIWDTAGQERFQS---L---GVAFYR--GAD-CCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDL 121 (172)
T ss_pred EEEEeCCChHHHHh---H---HHHHhc--CCC-EEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccc
Confidence 45899999743211 1 112232 333 689999976432211 11211111111111237899999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.... .. . .+ .+..+.+.++.+.++++|+.++++++.++..|-+.
T Consensus 122 ~~~~-~~----~--~~-------------------~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 122 EEKR-QV----S--TK-------------------KAQQWCQSNGNIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred cccc-cc----C--HH-------------------HHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 7422 00 0 00 01122335556899999999999999999998764
No 70
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.03 E-value=0.00018 Score=61.94 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=90.1
Q ss_pred ChHHHHHHHHHHHHhhH-HHHHHHhcc------cC-CCCEEEEeCCCceeeeeccc--------hHHHHHHHHhh-CCCc
Q 026584 38 PNGGLIYCMEHLEDNLD-DWLAEELDN------YL-DDDYLVFDCPGQIELFTHVP--------VLRNFVDHLKS-RNFN 100 (236)
Q Consensus 38 PNGalv~~me~l~~n~~-~wl~~~i~~------~~-~~~Yil~D~PGQiElf~~~~--------~~~~iv~~L~~-~~~~ 100 (236)
-|-|....++-|..+-. --..+..+. +. .+.+.++|.|| |=+.. ..+.+.++|+. .+..
T Consensus 33 SNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPG----YGyAkv~k~~~e~w~~~i~~YL~~R~~L~ 108 (200)
T COG0218 33 SNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPG----YGYAKVPKEVKEKWKKLIEEYLEKRANLK 108 (200)
T ss_pred CcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCC----cccccCCHHHHHHHHHHHHHHHhhchhhe
Confidence 47777777777765220 111111111 11 34488999999 64333 34557778863 4554
Q ss_pred eEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584 101 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180 (236)
Q Consensus 101 ~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~ 180 (236)
.+|.|+|+.+.....+- .-+..+...++|++.|+||+|.+++.+ - .+...
T Consensus 109 -~vvlliD~r~~~~~~D~-----em~~~l~~~~i~~~vv~tK~DKi~~~~-~-----------------------~k~l~ 158 (200)
T COG0218 109 -GVVLLIDARHPPKDLDR-----EMIEFLLELGIPVIVVLTKADKLKKSE-R-----------------------NKQLN 158 (200)
T ss_pred -EEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEccccCChhH-H-----------------------HHHHH
Confidence 57889999886655433 124556678999999999999987541 1 11111
Q ss_pred HHHHHhh-ccCC-eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 181 SLIELVD-EYSM-VSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 181 ~l~~li~-d~~l-v~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.+++-+. .+.- ..++..|+..+.++++|...|.+.+..
T Consensus 159 ~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 159 KVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 2222222 2222 238899999999999999999887643
No 71
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.03 E-value=3.6e-05 Score=63.03 Aligned_cols=101 Identities=15% Similarity=0.263 Sum_probs=68.5
Q ss_pred EEEeCCCceeeeeccchHHH-HHHHHhhCCCceEEEEeecCCC--ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 70 LVFDCPGQIELFTHVPVLRN-FVDHLKSRNFNVCAVYLLDSQF--ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~-iv~~L~~~~~~~~~V~LiD~~~--~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
-.||||| =|.-++.+.+ ++.. +.+.. ++++|.|+.. ..-|..|.+. +..|+|-|+||+|+.
T Consensus 39 ~~IDTPG---EyiE~~~~y~aLi~t--a~dad-~V~ll~dat~~~~~~pP~fa~~----------f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 39 NTIDTPG---EYIENPRFYHALIVT--AQDAD-VVLLLQDATEPRSVFPPGFASM----------FNKPVIGVITKIDLP 102 (143)
T ss_pred cEEECCh---hheeCHHHHHHHHHH--HhhCC-EEEEEecCCCCCccCCchhhcc----------cCCCEEEEEECccCc
Confidence 4599999 4665555444 3333 23555 5899999965 3456666643 578999999999998
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
++..++++ ..+.+..-|.-..+++|+.+++++++|...+.
T Consensus 103 ~~~~~i~~---------------------------a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 103 SDDANIER---------------------------AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred cchhhHHH---------------------------HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 44322221 01233444666779999999999999998875
No 72
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.03 E-value=7.6e-05 Score=62.72 Aligned_cols=114 Identities=18% Similarity=0.278 Sum_probs=66.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHh-hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~-~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.+.++||||+.+-..+. ....+...+. ..+.. ++++++|+..-..... +..+.-.+..+-.-+.|.+.|+||+|+.
T Consensus 90 ~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~d-~ii~v~D~~~~~~~~~-~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 90 EVLLTDTVGFIRDLPHQ-LVEAFRSTLEEVAEAD-LLLHVVDASDPDYEEQ-IETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred eEEEeCCCccccCCCHH-HHHHHHHHHHHHhcCC-eEEEEEECCCCChhhH-HHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 78999999987643321 1122222221 12334 5889999864222111 2222222222222368999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
... ... ... .-....++++|+.++.++..++..|.+.+
T Consensus 167 ~~~-~~~------------------------------~~~-~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 167 DDE-ELE------------------------------ERL-EAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ChH-HHH------------------------------HHh-hcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 543 110 000 11235799999999999999999987653
No 73
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.02 E-value=1.7e-05 Score=63.25 Aligned_cols=109 Identities=12% Similarity=0.191 Sum_probs=62.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHh-hcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV-QLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~-~l~lP~InVlsK~D 144 (236)
.+.++|||||.+.-.. .-..+ + +.+ ++++++|.. ++..|- ..++..+..+. ..+.|.+.|.||+|
T Consensus 49 ~~~i~D~~g~~~~~~~------~~~~~-~-~~~-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D 116 (164)
T cd04139 49 QLNILDTAGQEDYAAI------RDNYH-R-SGE-GFLLVFSIT---DMESFTATAEFREQILRVKDDDNVPLLLVGNKCD 116 (164)
T ss_pred EEEEEECCChhhhhHH------HHHHh-h-cCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccc
Confidence 4889999998753211 11123 2 233 467777754 444432 22222222221 35899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+.... .. ... ... .....++ ..++++|+.+++++++++..+-+.
T Consensus 117 ~~~~~-~~------~~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (164)
T cd04139 117 LEDKR-QV------SSE------------EAA-------NLARQWG-VPYVETSAKTRQNVEKAFYDLVRE 160 (164)
T ss_pred ccccc-cc------CHH------------HHH-------HHHHHhC-CeEEEeeCCCCCCHHHHHHHHHHH
Confidence 96521 00 000 000 1112223 478999999999999999988654
No 74
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.01 E-value=0.00011 Score=69.29 Aligned_cols=112 Identities=16% Similarity=0.272 Sum_probs=66.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCCC-EEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELP-HVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~lP-~InVlsK~DL 145 (236)
.+-++|||||-+ ..+.++..+.. .. ++++++|+..-. .+...-. +.....++.+ .|.|+||+|+
T Consensus 81 ~i~liDtPGh~~------f~~~~~~g~~~--aD-~aIlVVDa~~g~~~~qt~e~-----l~~l~~~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 81 RVSFVDAPGHET------LMATMLSGAAL--MD-GALLVIAANEPCPQPQTKEH-----LMALEIIGIKNIVIVQNKIDL 146 (406)
T ss_pred EEEEEECCCHHH------HHHHHHHHHHH--CC-EEEEEEECCCCccccchHHH-----HHHHHHcCCCeEEEEEEcccc
Confidence 578999999744 23444555432 33 589999997421 2222111 1112335555 6888999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.+.. .... .+.+ +.+++..+ .-+.++|+|+.++++++.|+..+++.+.
T Consensus 147 ~~~~-~~~~-------------------~~~~----i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 147 VSKE-KALE-------------------NYEE----IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CCHH-HHHH-------------------HHHH----HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 7543 1110 0011 11122222 1368999999999999999999998654
No 75
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.01 E-value=0.00011 Score=61.17 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=62.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHH-HHHhhcCCCEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sl-s~m~~l~lP~InVlsK~DLl 146 (236)
.+-++|||||-. | +.+....- .+.. ++++++|+.......... ..+..+ ......+.|.+.|+||+|+.
T Consensus 53 ~l~l~Dt~G~~~-~------~~~~~~~~-~~~d-~ii~v~D~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 53 TFHFWDVGGQEK-L------RPLWKSYT-RCTD-GIVFVVDSVDVERMEEAK-TELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred EEEEEECCCcHh-H------HHHHHHHh-ccCC-EEEEEEECCCHHHHHHHH-HHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 468899999832 1 11222221 2333 589999965432222211 122111 22234689999999999985
Q ss_pred cch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 147 TNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
... .++..++. +. + ...+....++|+|+++++++++++..|-+.+
T Consensus 123 ~~~~~~~~~~~~~--------------------~~----~-~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 123 NALSVSEVEKLLA--------------------LH----E-LSASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred ccCCHHHHHHHhC--------------------cc----c-cCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 321 01111100 00 0 0111225689999999999999998876544
No 76
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.00 E-value=0.00011 Score=70.64 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhc----------ccCCCCEEEEeCCCceeeeeccchHHHHHHHH---hh-CCCceEE
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELD----------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL---KS-RNFNVCA 103 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L---~~-~~~~~~~ 103 (236)
||-|.-.-++.|...-......... .+....|.|+||||+..-.... .+......+ .. .+.. ++
T Consensus 220 ~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~-~~~e~~~~~~~~~~i~~ad-~v 297 (472)
T PRK03003 220 PNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQA-SGHEYYASLRTHAAIEAAE-VA 297 (472)
T ss_pred CCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCcccccccc-chHHHHHHHHHHHHHhcCC-EE
Confidence 7777777777776431011111100 1113358899999974322211 111111111 11 1333 68
Q ss_pred EEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584 104 VYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI 183 (236)
Q Consensus 104 V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~ 183 (236)
++++|+..-....+. -+ +.....-+.|.|.|+||+||.... ... .+...+.
T Consensus 298 ilV~Da~~~~s~~~~---~~--~~~~~~~~~piIiV~NK~Dl~~~~-~~~-----------------------~~~~~i~ 348 (472)
T PRK03003 298 VVLIDASEPISEQDQ---RV--LSMVIEAGRALVLAFNKWDLVDED-RRY-----------------------YLEREID 348 (472)
T ss_pred EEEEeCCCCCCHHHH---HH--HHHHHHcCCCEEEEEECcccCChh-HHH-----------------------HHHHHHH
Confidence 899998643222221 11 222334689999999999997532 110 0111111
Q ss_pred HHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 184 ELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 184 ~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+-+.......++++|++++.++++++..|.+.+.
T Consensus 349 ~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 349 RELAQVPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred HhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2222233467899999999999999999988653
No 77
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.00 E-value=0.00012 Score=58.46 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=63.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||... +.+....-+ +.. ++++++|+..-..+.. +..++..+.....-+.|.+.|.||+|+..
T Consensus 50 ~l~~~D~~G~~~~-------~~~~~~~~~-~~~-~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 50 RLQLWDTAGQERF-------RSLIPSYIR-DSS-VAVVVYDITNRQSFDN-TDKWIDDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred EEEEEECCCcHHH-------HHHHHHHhc-cCC-EEEEEEECcCHHHHHH-HHHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence 4689999997542 122222212 233 5888888754322222 22232222211112599999999999963
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.. .. ..+ .... +....+ ..++++|++++++++.++..|-+.
T Consensus 120 ~~-~~------~~~------------~~~~-------~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 120 KR-QV------STE------------EGEK-------KAKELN-AMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred cC-cc------CHH------------HHHH-------HHHHhC-CEEEEEeCCCCCCHHHHHHHHHHh
Confidence 32 10 000 0011 112233 678999999999999999998664
No 78
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.99 E-value=5.7e-05 Score=72.22 Aligned_cols=115 Identities=17% Similarity=0.283 Sum_probs=69.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-------chhhHHHHHHHHHHHHhhcCCCEE-E
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-------DVTKFISGCMASLSAMVQLELPHV-N 138 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-------dp~~~is~~l~sls~m~~l~lP~I-n 138 (236)
..+.|+||||+ .+..+..+..+.. .. ++++++|+..=. .+..- -.+.....+++|++ .
T Consensus 85 ~~i~lIDtPGh------~~f~~~~~~g~~~--aD-~ailVVda~~G~~e~~~~~~~qT~-----eh~~~~~~~gi~~iiv 150 (446)
T PTZ00141 85 YYFTIIDAPGH------RDFIKNMITGTSQ--AD-VAILVVASTAGEFEAGISKDGQTR-----EHALLAFTLGVKQMIV 150 (446)
T ss_pred eEEEEEECCCh------HHHHHHHHHhhhh--cC-EEEEEEEcCCCceecccCCCccHH-----HHHHHHHHcCCCeEEE
Confidence 35789999994 4445666666633 33 578899986311 11111 11223345799985 7
Q ss_pred EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHH-------
Q 026584 139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY------- 207 (236)
Q Consensus 139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~------- 207 (236)
|+||+|...-. |-+ .+|.+..+.+.+.+...++ +.|+|+|+.+++++..
T Consensus 151 ~vNKmD~~~~~-----~~~---------------~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~W 210 (446)
T PTZ00141 151 CINKMDDKTVN-----YSQ---------------ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPW 210 (446)
T ss_pred EEEccccccch-----hhH---------------HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcc
Confidence 89999953110 000 1233334444455554444 7899999999999964
Q ss_pred -----HHHHHHHh
Q 026584 208 -----VLSQIDNC 215 (236)
Q Consensus 208 -----L~~~Id~~ 215 (236)
|+.++++.
T Consensus 211 y~G~tL~~~l~~~ 223 (446)
T PTZ00141 211 YKGPTLLEALDTL 223 (446)
T ss_pred cchHHHHHHHhCC
Confidence 88888875
No 79
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.99 E-value=9.5e-05 Score=77.14 Aligned_cols=131 Identities=22% Similarity=0.283 Sum_probs=71.5
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
..++|||||-. |+. ++ .... .... ++++++|+..--.+..+-+ +....+.+.|.|.|+||+|+...
T Consensus 528 i~fiDTPGhe~-F~~---lr--~~g~--~~aD-ivlLVVDa~~Gi~~qT~e~-----I~~lk~~~iPiIVViNKiDL~~~ 593 (1049)
T PRK14845 528 LLFIDTPGHEA-FTS---LR--KRGG--SLAD-LAVLVVDINEGFKPQTIEA-----INILRQYKTPFVVAANKIDLIPG 593 (1049)
T ss_pred EEEEECCCcHH-HHH---HH--Hhhc--ccCC-EEEEEEECcccCCHhHHHH-----HHHHHHcCCCEEEEEECCCCccc
Confidence 79999999633 321 11 1111 2233 5888999865334544433 23344568999999999999742
Q ss_pred hh-----HhhhhccccHHHHHHHhhhcchhHHHHHHH---------HHHHHhhccCC-eeEEEeeccCcccHHHHHHHHH
Q 026584 149 KK-----EIEDYLNPESQFLLSELNQHMAPQFAKLNK---------SLIELVDEYSM-VSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 149 ~~-----~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~---------~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id 213 (236)
.. .+..-+.........++.. +..++.. ....-+++|+- +.++|+|+.++++|..|+..|-
T Consensus 594 ~~~~~~~~~~~~~~~q~~~~~~el~~----~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~ 669 (1049)
T PRK14845 594 WNISEDEPFLLNFNEQDQHALTELEI----KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA 669 (1049)
T ss_pred cccccchhhhhhhhhhHHHHHHHHHH----HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 10 0100001011111111110 1111111 11122456655 8999999999999999998886
Q ss_pred Hhhc
Q 026584 214 NCIQ 217 (236)
Q Consensus 214 ~~~~ 217 (236)
..-|
T Consensus 670 ~l~~ 673 (1049)
T PRK14845 670 GLAQ 673 (1049)
T ss_pred HhhH
Confidence 5433
No 80
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.98 E-value=7.6e-05 Score=70.40 Aligned_cols=113 Identities=24% Similarity=0.359 Sum_probs=64.3
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEeccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~DL 145 (236)
.++.++||||+ .+..+.+...+.. .. ++++++|+..=-.+...=- +.....++.|+ |.|+||+|+
T Consensus 80 ~~~~liDtPGh------~~f~~~~~~~~~~--aD-~allVVda~~G~~~qt~~~-----~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 80 RKFIVADTPGH------EQYTRNMATGAST--AD-LAVLLVDARKGVLEQTRRH-----SYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred eEEEEEeCCCH------HHHHHHHHHHHhh--CC-EEEEEEECCCCCccccHHH-----HHHHHHcCCCcEEEEEEeccc
Confidence 46899999994 3344445555533 33 5889999864222221100 11122346764 668999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHH------------HHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRY------------VLSQ 211 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~------------L~~~ 211 (236)
.....+ .+.+....+.+++..++. +.++|+|+.+++++.. |+..
T Consensus 146 ~~~~~~----------------------~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~ 203 (406)
T TIGR02034 146 VDYDEE----------------------VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEI 203 (406)
T ss_pred ccchHH----------------------HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHH
Confidence 742211 111111122223333333 6899999999999875 6777
Q ss_pred HHHh
Q 026584 212 IDNC 215 (236)
Q Consensus 212 Id~~ 215 (236)
++..
T Consensus 204 L~~~ 207 (406)
T TIGR02034 204 LETV 207 (406)
T ss_pred HHhc
Confidence 7754
No 81
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.97 E-value=0.00026 Score=55.90 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=65.6
Q ss_pred CEEEEeCCCceeeeec---cchHHH-HHHHHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584 68 DYLVFDCPGQIELFTH---VPVLRN-FVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~---~~~~~~-iv~~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
.+.++||||--..-.. ...... +...++. .+.. .+++++|......+...- ....+...+.|.+.|+||
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~-----~~~~l~~~~~~vi~v~nK 119 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLK-GVVLLIDSRHGPTEIDLE-----MLDWLEELGIPFLVVLTK 119 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhh-EEEEEEEcCcCCCHhHHH-----HHHHHHHcCCCEEEEEEc
Confidence 6789999993322111 011111 1222322 2233 467788876543222211 123334468999999999
Q ss_pred cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh-ccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD-EYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~-d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+|+.+.. +... .... +...++ ......++|+|+.++.++.++...|.+.
T Consensus 120 ~D~~~~~-~~~~-------------------~~~~----~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 120 ADKLKKS-ELAK-------------------ALKE----IKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hhcCChH-HHHH-------------------HHHH----HHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 9997543 1111 0111 112222 2334789999999999999999998764
No 82
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.96 E-value=4.9e-05 Score=62.87 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=69.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D 144 (236)
...|+|||||-+... ++.. .+ .+.. +++++.|+. ++.+|-+. ++..+.. ..-+.|.|.|.||+|
T Consensus 50 ~l~i~Dt~G~~~~~~----~~~~--~~--~~~d-~~ilv~d~~---~~~sf~~~~~~~~~~~~~-~~~~~piilvgnK~D 116 (174)
T cd01871 50 NLGLWDTAGQEDYDR----LRPL--SY--PQTD-VFLICFSLV---SPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 116 (174)
T ss_pred EEEEEECCCchhhhh----hhhh--hc--CCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHH-hCCCCCEEEEeeChh
Confidence 357999999854322 1111 12 2333 688889974 45555443 2222222 223799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
|.+.+...++.... ...... .....++..+++...|++.|+++++++++++..+-+.
T Consensus 117 l~~~~~~~~~~~~~--------~~~~v~------~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 117 LRDDKDTIEKLKEK--------KLTPIT------YPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hccChhhHHHHhhc--------cCCCCC------HHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 96433222221110 000000 1112244456676799999999999999999887653
No 83
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.96 E-value=7.3e-05 Score=59.67 Aligned_cols=108 Identities=14% Similarity=0.209 Sum_probs=61.1
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHh-hcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~-~l~lP~InVlsK~DL 145 (236)
+-|+|||||-++.. ++. ..++ +.. ++++++|... +..| +..++..+.... .-+.|.+.|.||+|+
T Consensus 51 l~i~Dt~G~~~~~~----~~~--~~~~--~~~-~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 118 (163)
T cd04136 51 LEILDTAGTEQFTA----MRD--LYIK--NGQ-GFVLVYSITS---QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDL 118 (163)
T ss_pred EEEEECCCccccch----HHH--HHhh--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 35799999865322 111 1122 233 5677778643 3333 222222222111 137899999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.... .. . . ... . ++...++ ..++++|+++++++.+++..+-+.
T Consensus 119 ~~~~-~~----~--~------------~~~----~---~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 119 EDER-VV----S--R------------EEG----Q---ALARQWG-CPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred cccc-ee----c--H------------HHH----H---HHHHHcC-CeEEEecCCCCCCHHHHHHHHHHh
Confidence 6432 11 0 0 000 0 1223455 789999999999999999887553
No 84
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.96 E-value=8.8e-05 Score=61.33 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=58.4
Q ss_pred CCEEEEeCCCceeeeec---cchHHHHH-HHHhhC-CCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584 67 DDYLVFDCPGQIELFTH---VPVLRNFV-DHLKSR-NFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNIL 140 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~---~~~~~~iv-~~L~~~-~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVl 140 (236)
.++.++||||+-+-..- +.....++ ..++.. ... ++++++|+.. .......+ +...-..+.|++.|+
T Consensus 64 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ii~vvd~~~~~~~~~~~~------~~~~~~~~~pviiv~ 136 (179)
T TIGR03598 64 DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLK-GVVLLMDIRHPLKELDLEM------LEWLRERGIPVLIVL 136 (179)
T ss_pred CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhc-EEEEEecCCCCCCHHHHHH------HHHHHHcCCCEEEEE
Confidence 35789999995432211 11122222 233221 233 5899999864 22222211 122234689999999
Q ss_pred cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHH
Q 026584 141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIR 206 (236)
Q Consensus 141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~ 206 (236)
||+|+.... +.... ...+.+.+...+. .+++|+|+.++++++
T Consensus 137 nK~D~~~~~-~~~~~-----------------------~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 137 TKADKLKKS-ELNKQ-----------------------LKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred ECcccCCHH-HHHHH-----------------------HHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 999997533 22110 0111122222333 589999999999863
No 85
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.95 E-value=0.00019 Score=60.36 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=66.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHH--HHHHHh----hcCCCEEEEec
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA--SLSAMV----QLELPHVNILS 141 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~--sls~m~----~l~lP~InVls 141 (236)
.+.++|||||-. | +.+....- .+.. ++++++|+ +++..|-...-+ .+.... .-++|.|.|.|
T Consensus 51 ~l~l~Dt~G~~~-~------~~~~~~~~-~~a~-~~ilv~D~---t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~N 118 (201)
T cd04107 51 RLQLWDIAGQER-F------GGMTRVYY-RGAV-GAIIVFDV---TRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLAN 118 (201)
T ss_pred EEEEEECCCchh-h------hhhHHHHh-CCCC-EEEEEEEC---CCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence 357899999832 2 11112221 2343 68888995 556665543211 121111 24789999999
Q ss_pred ccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 142 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 142 K~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
|+|+.... .. .. ..+.++...++...+++.|+++++++++++..+-+.+
T Consensus 119 K~Dl~~~~-~~------~~-------------------~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 119 KCDLKKRL-AK------DG-------------------EQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred CCCccccc-cc------CH-------------------HHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99996422 00 00 0111233455667899999999999999999887754
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.95 E-value=0.00024 Score=55.43 Aligned_cols=109 Identities=13% Similarity=0.232 Sum_probs=62.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
++.++|||||.+ +. ......- .+.. ++++++|+..... -..+..++..+......+.|.+.|+||+|+..
T Consensus 50 ~~~l~D~~g~~~---~~----~~~~~~~-~~~d-~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 119 (159)
T cd00154 50 KLQIWDTAGQER---FR----SITPSYY-RGAH-GAILVYDITNRES-FENLDKWLKELKEYAPENIPIILVGNKIDLED 119 (159)
T ss_pred EEEEEecCChHH---HH----HHHHHHh-cCCC-EEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCCcEEEEEEcccccc
Confidence 367899999832 11 1222221 2334 5899999865222 22233333323222224699999999999962
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
.. .. .. ...+++.. . ....++.+|+++++++++++..|-
T Consensus 120 ~~-~~------~~------------~~~~~~~~-------~-~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 120 QR-QV------ST------------EEAQQFAK-------E-NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cc-cc------cH------------HHHHHHHH-------H-cCCeEEEEecCCCCCHHHHHHHHh
Confidence 22 00 00 01111111 1 236899999999999999998763
No 87
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.95 E-value=0.0001 Score=59.26 Aligned_cols=110 Identities=12% Similarity=0.224 Sum_probs=61.0
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEeccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLVT 147 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl~ 147 (236)
+-|+|||||-++... +.. .++ +.. ++++++|+........ +..++..+.-. ..-++|.+.|.||+|+..
T Consensus 51 l~i~Dt~G~~~~~~~----~~~--~~~--~~d-~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 51 LEILDTAGTEQFTAM----RDL--YMK--NGQ-GFVLVYSITAQSTFND-LQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred EEEEECCCcccchhH----HHH--HHh--hCC-EEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 358999999653321 111 122 233 5777888643222221 22222222211 124799999999999964
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.. .. . .. . .. ++.+.++ ..|+++|++++.++.+++..|=+.
T Consensus 121 ~~-~~----~--~~------------~----~~---~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 121 ER-VV----G--KE------------Q----GQ---NLARQWG-CAFLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred cc-EE----c--HH------------H----HH---HHHHHhC-CEEEEeeCCCCCCHHHHHHHHHHH
Confidence 32 11 0 00 0 00 1112233 579999999999999999987553
No 88
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.94 E-value=5.7e-05 Score=71.37 Aligned_cols=113 Identities=17% Similarity=0.335 Sum_probs=63.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC--ccchhhHHHHHHHHHHHHhhcCCC-EEEEeccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF--ITDVTKFISGCMASLSAMVQLELP-HVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~--~~dp~~~is~~l~sls~m~~l~lP-~InVlsK~ 143 (236)
..+.++|||||-. | .+.+...+. +.. ++++++|+.- -..+...- .+.....++.| .+.|+||+
T Consensus 84 ~~i~liDtpG~~~-~-----~~~~~~~~~--~aD-~~ilVvDa~~~~~~~~~~~~-----~~~~~~~~~~~~iivviNK~ 149 (425)
T PRK12317 84 YYFTIVDCPGHRD-F-----VKNMITGAS--QAD-AAVLVVAADDAGGVMPQTRE-----HVFLARTLGINQLIVAINKM 149 (425)
T ss_pred eEEEEEECCCccc-c-----hhhHhhchh--cCC-EEEEEEEcccCCCCCcchHH-----HHHHHHHcCCCeEEEEEEcc
Confidence 3679999999733 2 223333342 233 6889999864 11111111 11112345665 67789999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHH------------
Q 026584 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY------------ 207 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~------------ 207 (236)
|+.....+ .+....+.+.+++..+++ +.++|+|+.+++++.+
T Consensus 150 Dl~~~~~~----------------------~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~ 207 (425)
T PRK12317 150 DAVNYDEK----------------------RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPT 207 (425)
T ss_pred ccccccHH----------------------HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHH
Confidence 99752200 111122222233444443 6899999999999986
Q ss_pred HHHHHHHh
Q 026584 208 VLSQIDNC 215 (236)
Q Consensus 208 L~~~Id~~ 215 (236)
|+.+++..
T Consensus 208 L~~~l~~~ 215 (425)
T PRK12317 208 LLEALDNL 215 (425)
T ss_pred HHHHHhcC
Confidence 77777653
No 89
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.94 E-value=8.1e-05 Score=56.58 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=70.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
...++|||||.+..... ...+ .+.. ++++++|+..-................+...+.|.+.|+||+|+..
T Consensus 46 ~~~l~D~~g~~~~~~~~------~~~~--~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 46 KLQIWDTAGQERFRSLR------RLYY--RGAD-GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEEEEecCChHHHHhHH------HHHh--cCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 57899999987643321 1122 2333 5788899875443333332222345566778999999999999975
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
.. ..... . ............++++|+.++.++..++..|-
T Consensus 117 ~~-~~~~~------------------~-------~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 117 ER-VVSEE------------------E-------LAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred cc-chHHH------------------H-------HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 43 11100 0 11122234458999999999999999998764
No 90
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.94 E-value=0.00016 Score=60.51 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=38.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||-++.. .. ...++ +.. ++++++|+..-..+.. . .+ +......+.|.+.|+||+|+..
T Consensus 66 ~~~l~DtpG~~~~~~---~~---~~~~~--~~d-~~ilV~d~~~~~~~~~--~-~~--~~~~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 66 KINIVDTPGHADFGG---EV---ERVLS--MVD-GVLLLVDASEGPMPQT--R-FV--LKKALELGLKPIVVINKIDRPD 131 (194)
T ss_pred EEEEEECCCcHHHHH---HH---HHHHH--hcC-EEEEEEECCCCccHHH--H-HH--HHHHHHcCCCEEEEEECCCCCC
Confidence 578999999865321 11 12232 233 5788999864211111 1 11 1222346899999999999964
No 91
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.93 E-value=0.00018 Score=56.29 Aligned_cols=111 Identities=20% Similarity=0.271 Sum_probs=61.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHH-HHHHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMAS-LSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~s-ls~m~~l~lP~InVlsK~D 144 (236)
.+.++|||||.+. +.+....-+ +.. ++++++|+.. +..+-.. .+.. +......+.|++.|+||+|
T Consensus 45 ~~~~~D~~g~~~~-------~~~~~~~~~-~~d-~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 112 (159)
T cd04159 45 TLKVWDLGGQPRF-------RSMWERYCR-GVN-AIVYVVDAAD---RTALEAAKNELHDLLEKPSLEGIPLLVLGNKND 112 (159)
T ss_pred EEEEEECCCCHhH-------HHHHHHHHh-cCC-EEEEEEECCC---HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcc
Confidence 4689999998542 222222212 333 5888999754 3332211 1111 1111225789999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
+.+.. .... +...+.. .... ...++++++|++++.+++.++..|.+
T Consensus 113 ~~~~~-~~~~--------~~~~~~~--------------~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 113 LPGAL-SVDE--------LIEQMNL--------------KSIT-DREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCc-CHHH--------HHHHhCc--------------cccc-CCceEEEEEEeccCCChHHHHHHHhh
Confidence 86532 1111 0010100 0001 12268899999999999999988754
No 92
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.93 E-value=0.00016 Score=72.80 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=83.2
Q ss_pred ChHHHHHHHHHHHHh-hHHHHHHHhc----------ccCCCCEEEEeCCCceeeeeccchHHHHHHHH---hh-CCCceE
Q 026584 38 PNGGLIYCMEHLEDN-LDDWLAEELD----------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL---KS-RNFNVC 102 (236)
Q Consensus 38 PNGalv~~me~l~~n-~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L---~~-~~~~~~ 102 (236)
||.|.-.-++.|... . ....+... .+...+|.++||||+.+-.... .+......+ .. .... +
T Consensus 459 ~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~-~~~e~~~~~r~~~~i~~ad-v 535 (712)
T PRK09518 459 PNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKL-TGAEYYSSLRTQAAIERSE-L 535 (712)
T ss_pred CCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccc-hhHHHHHHHHHHHHhhcCC-E
Confidence 788888888877643 1 11111110 1223468899999976533221 111222222 11 1233 5
Q ss_pred EEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584 103 AVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL 182 (236)
Q Consensus 103 ~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l 182 (236)
+++++|+..-....+. -+ +....+.+.|.|.|+||+||.+.. ... .+.+.+
T Consensus 536 vilViDat~~~s~~~~---~i--~~~~~~~~~piIiV~NK~DL~~~~-~~~-----------------------~~~~~~ 586 (712)
T PRK09518 536 ALFLFDASQPISEQDL---KV--MSMAVDAGRALVLVFNKWDLMDEF-RRQ-----------------------RLERLW 586 (712)
T ss_pred EEEEEECCCCCCHHHH---HH--HHHHHHcCCCEEEEEEchhcCChh-HHH-----------------------HHHHHH
Confidence 7899998653322221 11 122345689999999999997532 110 011111
Q ss_pred HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
...+...+....+++|+.++.++..|+..|.++..
T Consensus 587 ~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 587 KTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred HHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11122233467799999999999999999988754
No 93
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.92 E-value=0.0002 Score=67.81 Aligned_cols=112 Identities=14% Similarity=0.224 Sum_probs=66.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCC-CEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLEL-PHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~l-P~InVlsK~DL 145 (236)
.+.++|||||-+ ..+..+..+. +.. ++++++|+..-. .+...-.. .....+++ |.+.|+||+|+
T Consensus 86 ~i~liDtPG~~~------f~~~~~~~~~--~~D-~~llVVDa~~~~~~~~t~~~l-----~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 86 RVSFVDAPGHET------LMATMLSGAA--LMD-GAILVIAANEPCPQPQTKEHL-----MALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred EEEEEECCCHHH------HHHHHHHHHh--hCC-EEEEEEECCCCCCChhHHHHH-----HHHHHcCCCcEEEEEEeecc
Confidence 578999999743 2233333332 334 589999987421 23222211 11224566 47888999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.+.. .... .+. .+.+++..+ .-+.++|+|+.+++++..|+..|++.+.
T Consensus 152 ~~~~-~~~~-------------------~~~----~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 152 VSKE-RALE-------------------NYE----QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred ccch-hHHH-------------------HHH----HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 7543 1110 000 111222222 1368999999999999999999998653
No 94
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.92 E-value=7.9e-05 Score=71.29 Aligned_cols=114 Identities=20% Similarity=0.364 Sum_probs=69.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC--cc-----chhhHHHHHHHHHHHHhhcCCCE-EEE
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF--IT-----DVTKFISGCMASLSAMVQLELPH-VNI 139 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~--~~-----dp~~~is~~l~sls~m~~l~lP~-InV 139 (236)
.+-++|||||.+ ..+..+..+.. .. +++.++|+.. +. .+.. .- .+.....+++|+ |.|
T Consensus 86 ~i~liDtPGh~d------f~~~~~~g~~~--aD-~aIlVVda~~G~~e~g~~~~~qT-~e----h~~~~~~~gi~~iIV~ 151 (447)
T PLN00043 86 YCTVIDAPGHRD------FIKNMITGTSQ--AD-CAVLIIDSTTGGFEAGISKDGQT-RE----HALLAFTLGVKQMICC 151 (447)
T ss_pred EEEEEECCCHHH------HHHHHHhhhhh--cc-EEEEEEEcccCceecccCCCchH-HH----HHHHHHHcCCCcEEEE
Confidence 578999999544 44555555633 33 5788899864 11 0111 11 122233479987 667
Q ss_pred ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHH--------
Q 026584 140 LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY-------- 207 (236)
Q Consensus 140 lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~-------- 207 (236)
+||+|+.... | ...+|.+..+++.+++...++ +.|+|+|+.+++++.+
T Consensus 152 vNKmD~~~~~-----~---------------~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy 211 (447)
T PLN00043 152 CNKMDATTPK-----Y---------------SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY 211 (447)
T ss_pred EEcccCCchh-----h---------------hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCccc
Confidence 9999985211 0 012344444455556665553 7899999999999853
Q ss_pred ----HHHHHHHh
Q 026584 208 ----VLSQIDNC 215 (236)
Q Consensus 208 ----L~~~Id~~ 215 (236)
|+.++|+.
T Consensus 212 ~g~tLl~~l~~i 223 (447)
T PLN00043 212 KGPTLLEALDQI 223 (447)
T ss_pred chHHHHHHHhhc
Confidence 77777764
No 95
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.92 E-value=0.00012 Score=67.93 Aligned_cols=140 Identities=16% Similarity=0.242 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhc----------cc-CCCCEEEEeCCCceeeeecc--chHHHHHHHHhhCCCceEEE
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELD----------NY-LDDDYLVFDCPGQIELFTHV--PVLRNFVDHLKSRNFNVCAV 104 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~----------~~-~~~~Yil~D~PGQiElf~~~--~~~~~iv~~L~~~~~~~~~V 104 (236)
||-|...-++.|...- -+..+.+. .+ ....+.++||||++.-..+. ...+...+.+. +.. +++
T Consensus 198 ~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~--~AD-lil 273 (351)
T TIGR03156 198 TNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVR--EAD-LLL 273 (351)
T ss_pred CCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHH--hCC-EEE
Confidence 8999999999887531 11112211 11 12368999999985422221 12223333332 334 589
Q ss_pred EeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584 105 YLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE 184 (236)
Q Consensus 105 ~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~ 184 (236)
+++|+..-..... +..+.--+...-..+.|.+.|+||+|+.... .+. .+
T Consensus 274 ~VvD~s~~~~~~~-~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-~v~-----------------------~~------ 322 (351)
T TIGR03156 274 HVVDASDPDREEQ-IEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-RIE-----------------------RL------ 322 (351)
T ss_pred EEEECCCCchHHH-HHHHHHHHHHhccCCCCEEEEEEeecCCChH-hHH-----------------------HH------
Confidence 9999854322221 2221111211112378999999999996432 110 00
Q ss_pred HhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.. +...++++|++++++++.|...|.+.
T Consensus 323 -~~--~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 323 -EE--GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred -Hh--CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 00 11357999999999999999998664
No 96
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.91 E-value=0.00019 Score=59.25 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=67.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+.|+|||||-+... + ..+.-.+.. ++++++|+.. +..|-.. ++-.. ....-+.|.|.|.||+|
T Consensus 50 ~l~i~Dt~G~~~~~~-------~-~~~~~~~ad-~ii~v~d~~~---~~s~~~~~~~~~~~~-~~~~~~~piilv~nK~D 116 (187)
T cd04132 50 ELALWDTAGQEEYDR-------L-RPLSYPDVD-VLLICYAVDN---PTSLDNVEDKWFPEV-NHFCPGTPIMLVGLKTD 116 (187)
T ss_pred EEEEEECCCchhHHH-------H-HHHhCCCCC-EEEEEEECCC---HHHHHHHHHHHHHHH-HHhCCCCCEEEEEeChh
Confidence 357889999865221 1 111112344 6888999754 4444322 22222 12234799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
|.... ...+.... ....++...++...+++.|+++++++.+++..+-+....
T Consensus 117 l~~~~-~~~~~v~~---------------------~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 117 LRKDK-NLDRKVTP---------------------AQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred hhhCc-cccCCcCH---------------------HHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 96532 11111110 001123345565589999999999999999888775443
No 97
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.90 E-value=0.00012 Score=70.49 Aligned_cols=105 Identities=21% Similarity=0.316 Sum_probs=59.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhHHHHHHHHHHHHhhcCC-CEEEEecccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLEL-PHVNILSKMD 144 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~is~~l~sls~m~~l~l-P~InVlsK~D 144 (236)
.+|.++||||+ .+..+.....+. ... ++++++|+..--.+ ..-... ....+++ |.|.|+||+|
T Consensus 107 ~~i~~iDTPGh------~~f~~~~~~~l~--~aD-~allVVDa~~G~~~qt~~~~~------l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 107 RKFIIADTPGH------EQYTRNMATGAS--TCD-LAILLIDARKGVLDQTRRHSF------IATLLGIKHLVVAVNKMD 171 (474)
T ss_pred cEEEEEECCCc------HHHHHHHHHHHh--hCC-EEEEEEECCCCccccchHHHH------HHHHhCCCceEEEEEeec
Confidence 47899999993 344445555553 233 58999998642222 111111 1122345 4677999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC---CeeEEEeeccCcccHHHH
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS---MVSFMPLDLRKESSIRYV 208 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~---lv~f~pls~~d~~~i~~L 208 (236)
+.+...+ .+.++...+..++..++ ...++|+|+.+++++..+
T Consensus 172 ~~~~~~~----------------------~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 172 LVDYSEE----------------------VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cccchhH----------------------HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 9742211 11111112222233332 378999999999998763
No 98
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.89 E-value=0.00016 Score=57.13 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=61.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHH-HHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLS-AMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls-~m~~l~lP~InVlsK~D 144 (236)
.+.++|||||.+....+ -..++ +.. ++++++|+.. +..+ +..+...+. ...+.+.|.+.|.||+|
T Consensus 48 ~~~l~D~~g~~~~~~~~------~~~~~--~~~-~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (160)
T cd00876 48 TLDILDTAGQEEFSAMR------DLYIR--QGD-GFILVYSITD---RESFEEIKGYREQILRVKDDEDIPIVLVGNKCD 115 (160)
T ss_pred EEEEEECCChHHHHHHH------HHHHh--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCc
Confidence 35689999987722211 12232 233 4677778643 3332 222222222 22225899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+.+.. .. . .+ .+.++...++ ..++++|+++++++..++..|-+.
T Consensus 116 ~~~~~-~~----~--~~-------------------~~~~~~~~~~-~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 116 LENER-QV----S--KE-------------------EGKALAKEWG-CPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred ccccc-ee----c--HH-------------------HHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHhh
Confidence 97522 11 0 00 0001111222 679999999999999999987543
No 99
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.89 E-value=0.00027 Score=56.35 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=60.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHH-HhhcCCCEEEEeccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSA-MVQLELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~-m~~l~lP~InVlsK~ 143 (236)
.+.++|||||-++ +.... .++ +.+ ++|+++|+.. +..+-. ..+..+.. ...-+.|.+.|+||+
T Consensus 45 ~l~i~D~~G~~~~-------~~~~~~~~~--~~~-~iv~v~D~~~---~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 111 (160)
T cd04156 45 SLTVWDVGGQEKM-------RTVWKCYLE--NTD-GLVYVVDSSD---EARLDESQKELKHILKNEHIKGVPVVLLANKQ 111 (160)
T ss_pred EEEEEECCCCHhH-------HHHHHHHhc--cCC-EEEEEEECCc---HHHHHHHHHHHHHHHhchhhcCCCEEEEEECc
Confidence 5788999998542 11112 232 334 5889999764 332222 12222111 111489999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
|+.... . ...+...+. . .+.... .-..++|.|++++++++.++..|-
T Consensus 112 Dl~~~~-~--------~~~i~~~~~--~-----------~~~~~~-~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 112 DLPGAL-T--------AEEITRRFK--L-----------KKYCSD-RDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred ccccCc-C--------HHHHHHHcC--C-----------cccCCC-CcEEEEecccccCCChHHHHHHHh
Confidence 985321 0 001100000 0 001111 125789999999999999998874
No 100
>PRK04213 GTP-binding protein; Provisional
Probab=97.88 E-value=0.00017 Score=60.37 Aligned_cols=125 Identities=18% Similarity=0.304 Sum_probs=62.6
Q ss_pred CEEEEeCCCceeeeeccch----HHHHHH-HHh-hCCCceEEEEeecCCCccch-hhHH-----HHHHHHHHHHhhcCCC
Q 026584 68 DYLVFDCPGQIELFTHVPV----LRNFVD-HLK-SRNFNVCAVYLLDSQFITDV-TKFI-----SGCMASLSAMVQLELP 135 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~----~~~iv~-~L~-~~~~~~~~V~LiD~~~~~dp-~~~i-----s~~l~sls~m~~l~lP 135 (236)
++.++||||.-.+-.+... .+.+.. .+. ..+.-.++++++|+....+. ..+. ..-.-........++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 5899999996322222211 222111 121 11222467889998543221 1110 0000001111235899
Q ss_pred EEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHH
Q 026584 136 HVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 136 ~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id 213 (236)
.+.|+||+|+.....+. ..++. +.+ ++-..|.- ..++|+|+.++ ++++++..|-
T Consensus 133 ~iiv~NK~Dl~~~~~~~-----------~~~~~-----------~~~-~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~ 188 (201)
T PRK04213 133 PIVAVNKMDKIKNRDEV-----------LDEIA-----------ERL-GLYPPWRQWQDIIAPISAKKG-GIEELKEAIR 188 (201)
T ss_pred eEEEEECccccCcHHHH-----------HHHHH-----------HHh-cCCccccccCCcEEEEecccC-CHHHHHHHHH
Confidence 99999999986432000 00000 000 00001111 35899999999 9999999987
Q ss_pred Hhh
Q 026584 214 NCI 216 (236)
Q Consensus 214 ~~~ 216 (236)
+.+
T Consensus 189 ~~~ 191 (201)
T PRK04213 189 KRL 191 (201)
T ss_pred Hhh
Confidence 754
No 101
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.88 E-value=0.00027 Score=57.75 Aligned_cols=108 Identities=13% Similarity=0.183 Sum_probs=63.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh---cCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ---LELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~---l~lP~InVlsK~D 144 (236)
.+-|+|||||-+.. .+....- .+.. ++++++|+. ++.+|....-+--.+.-+ -+.|.+.|.||+|
T Consensus 64 ~~~i~Dt~G~~~~~-------~~~~~~~-~~~~-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 131 (180)
T cd04127 64 HLQLWDTAGQERFR-------SLTTAFF-RDAM-GFLLIFDLT---NEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKAD 131 (180)
T ss_pred EEEEEeCCChHHHH-------HHHHHHh-CCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCcc
Confidence 46799999986521 1112221 2343 588899964 566655432211111111 2689999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
+.+.. ... .+ . ..++...++ +.++++|+++++++++++..+-+
T Consensus 132 l~~~~-~v~------~~------------~-------~~~~~~~~~-~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 132 LEDQR-QVS------EE------------Q-------AKALADKYG-IPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred chhcC-ccC------HH------------H-------HHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHH
Confidence 96432 110 00 0 011222334 47999999999999999988854
No 102
>PRK11058 GTPase HflX; Provisional
Probab=97.87 E-value=0.00011 Score=69.87 Aligned_cols=144 Identities=16% Similarity=0.244 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHHh-h--HHH-------HHHHhcccCC-CCEEEEeCCCceeeeeccchHHHHHHHHhh-CCCceEEEE
Q 026584 38 PNGGLIYCMEHLEDN-L--DDW-------LAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVY 105 (236)
Q Consensus 38 PNGalv~~me~l~~n-~--~~w-------l~~~i~~~~~-~~Yil~D~PGQiElf~~~~~~~~iv~~L~~-~~~~~~~V~ 105 (236)
||.|.-.-++.|... . .++ ....+. ... ...+++||||++..-. ++....+...++. .+.. ++++
T Consensus 206 ~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~-l~~~~~~~l~DTaG~~r~lp-~~lve~f~~tl~~~~~AD-lIL~ 282 (426)
T PRK11058 206 TNAGKSTLFNRITEARVYAADQLFATLDPTLRRID-VADVGETVLADTVGFIRHLP-HDLVAAFKATLQETRQAT-LLLH 282 (426)
T ss_pred CCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEE-eCCCCeEEEEecCcccccCC-HHHHHHHHHHHHHhhcCC-EEEE
Confidence 899999999998742 1 011 111111 112 2679999999754222 2223334444432 2344 5899
Q ss_pred eecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHH
Q 026584 106 LLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIEL 185 (236)
Q Consensus 106 LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~l 185 (236)
++|+..-..... +..+.--+..+-..+.|.+.|+||+|+.+.. .. . .. .
T Consensus 283 VvDaS~~~~~e~-l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~-~~---------~----~~-----~----------- 331 (426)
T PRK11058 283 VVDAADVRVQEN-IEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF-EP---------R----ID-----R----------- 331 (426)
T ss_pred EEeCCCccHHHH-HHHHHHHHHHhccCCCCEEEEEEcccCCCch-hH---------H----HH-----H-----------
Confidence 999854221111 1111111111222479999999999996432 00 0 00 0
Q ss_pred hhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 186 VDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 186 i~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
...+.-.++++|+.++++++.|+..|.+.+
T Consensus 332 -~~~~~~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 332 -DEENKPIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred -HhcCCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 011222257899999999999999998876
No 103
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.86 E-value=0.00023 Score=58.19 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=59.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHH-HHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLS-AMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls-~m~~l~lP~InVlsK~D 144 (236)
.+.++|||||-.+. ... -..+ .+.. ++++++|+..- ..|-. ..+..+. ....-+.|.+.|.||+|
T Consensus 59 ~l~l~D~~G~~~~~---~~~---~~~~--~~~d-~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 126 (173)
T cd04154 59 KLNIWDVGGQKTLR---PYW---RNYF--ESTD-ALIWVVDSSDR---LRLDDCKRELKELLQEERLAGATLLILANKQD 126 (173)
T ss_pred EEEEEECCCCHHHH---HHH---HHHh--CCCC-EEEEEEECCCH---HHHHHHHHHHHHHHhChhhcCCCEEEEEECcc
Confidence 35789999985421 111 1223 2333 68999997543 22221 1111111 11125799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh-ccCCeeEEEeeccCcccHHHHHHHH
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD-EYSMVSFMPLDLRKESSIRYVLSQI 212 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~-d~~lv~f~pls~~d~~~i~~L~~~I 212 (236)
+.... .. +.+...+ +... .-..+.++++|++++++++.++..+
T Consensus 127 l~~~~-~~--------~~~~~~~----------------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 127 LPGAL-SE--------EEIREAL----------------ELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred cccCC-CH--------HHHHHHh----------------CccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 96432 00 0000000 0000 1123689999999999999998875
No 104
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.86 E-value=0.00016 Score=71.87 Aligned_cols=112 Identities=22% Similarity=0.325 Sum_probs=64.3
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhh-HHHHHHHHHHHHhhcCCC-EEEEecccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELP-HVNILSKMD 144 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~-~is~~l~sls~m~~l~lP-~InVlsK~D 144 (236)
.++.++||||+- ...+.++..+.. .. ++++++|+..-..+.. -.. .....++.| .|.|+||+|
T Consensus 104 ~~~~liDtPG~~------~f~~~~~~~~~~--aD-~~llVvda~~g~~~~t~e~~------~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 104 RKFIVADTPGHE------QYTRNMVTGAST--AD-LAIILVDARKGVLTQTRRHS------FIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred ceEEEEECCChH------HHHHHHHHHHHh--CC-EEEEEEECCCCccccCHHHH------HHHHHhCCCeEEEEEEecc
Confidence 368999999943 333444455533 33 5788999864322221 111 112234665 456899999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHH------------HHHH
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIR------------YVLS 210 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~------------~L~~ 210 (236)
+.+...+ .+......+.+++..+++ +.++|+|+.+++++. .|+.
T Consensus 169 ~~~~~~~----------------------~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~ 226 (632)
T PRK05506 169 LVDYDQE----------------------VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLE 226 (632)
T ss_pred cccchhH----------------------HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHH
Confidence 9752211 111112222233444444 679999999999987 3777
Q ss_pred HHHHh
Q 026584 211 QIDNC 215 (236)
Q Consensus 211 ~Id~~ 215 (236)
.++..
T Consensus 227 ~l~~~ 231 (632)
T PRK05506 227 HLETV 231 (632)
T ss_pred HHhcC
Confidence 77764
No 105
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.86 E-value=0.00014 Score=74.00 Aligned_cols=144 Identities=17% Similarity=0.302 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHHHhh---HHHH----HHHhc--ccCCCCEEEEeCCCceeeeeccc--hHHHHH--HHHhhCCCceEEE
Q 026584 38 PNGGLIYCMEHLEDNL---DDWL----AEELD--NYLDDDYLVFDCPGQIELFTHVP--VLRNFV--DHLKSRNFNVCAV 104 (236)
Q Consensus 38 PNGalv~~me~l~~n~---~~wl----~~~i~--~~~~~~Yil~D~PGQiElf~~~~--~~~~iv--~~L~~~~~~~~~V 104 (236)
||-|.-+-+|-+...- ..|- +.+-. .....++.++||||+-++-.... +....+ +++...... +++
T Consensus 12 pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD-~vI 90 (772)
T PRK09554 12 PNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD-LLI 90 (772)
T ss_pred CCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCC-EEE
Confidence 8888888888886321 0121 00100 11133689999999876543211 222222 222222344 579
Q ss_pred EeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584 105 YLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE 184 (236)
Q Consensus 105 ~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~ 184 (236)
+++|+..... ..++ +.-..++++|.|.|+||+|+.++. .... ...++.
T Consensus 91 ~VvDat~ler-~l~l------~~ql~e~giPvIvVlNK~Dl~~~~-~i~i-------------------d~~~L~----- 138 (772)
T PRK09554 91 NVVDASNLER-NLYL------TLQLLELGIPCIVALNMLDIAEKQ-NIRI-------------------DIDALS----- 138 (772)
T ss_pred EEecCCcchh-hHHH------HHHHHHcCCCEEEEEEchhhhhcc-CcHH-------------------HHHHHH-----
Confidence 9999976432 2221 223456899999999999986433 1110 011111
Q ss_pred HhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+.++ +.++|+|+.++++++++...|++..+
T Consensus 139 --~~LG-~pVvpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 139 --ARLG-CPVIPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred --HHhC-CCEEEEEeecCCCHHHHHHHHHHhhh
Confidence 1222 57899999999999999999998753
No 106
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.85 E-value=0.00032 Score=57.88 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=62.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhh-cCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQ-LELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~-l~lP~InVlsK~D 144 (236)
.+.+.|||||-+ .+.+....- .+.+ +++|++|+. ++..+-.+ .+..+..... -+.|.+.|.||+|
T Consensus 58 ~l~l~D~~G~~~-------~~~~~~~~~-~~ad-~ii~v~D~t---~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 125 (175)
T smart00177 58 SFTVWDVGGQDK-------IRPLWRHYY-TNTQ-GLIFVVDSN---DRDRIDEAREELHRMLNEDELRDAVILVFANKQD 125 (175)
T ss_pred EEEEEECCCChh-------hHHHHHHHh-CCCC-EEEEEEECC---CHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcC
Confidence 578999999844 122222221 2444 689999965 44443222 1111111111 2589999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
|.... . .+.+...+. . .. +.+. .+.++|.|+++++++.+++..|-+.+
T Consensus 126 l~~~~-~--------~~~i~~~~~--~-----------~~-~~~~-~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 126 LPDAM-K--------AAEITEKLG--L-----------HS-IRDR-NWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred cccCC-C--------HHHHHHHhC--c-----------cc-cCCC-cEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 85321 0 001101010 0 00 1111 25688999999999999999986653
No 107
>PLN03126 Elongation factor Tu; Provisional
Probab=97.83 E-value=0.00038 Score=67.25 Aligned_cols=113 Identities=18% Similarity=0.311 Sum_probs=66.5
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~D 144 (236)
+..|.++||||+-. .++..+..+.. .. ++++++|+.--..+..- -.+.....+++|+ |.|+||+|
T Consensus 143 ~~~i~liDtPGh~~------f~~~~~~g~~~--aD-~ailVVda~~G~~~qt~-----e~~~~~~~~gi~~iIvvvNK~D 208 (478)
T PLN03126 143 NRHYAHVDCPGHAD------YVKNMITGAAQ--MD-GAILVVSGADGPMPQTK-----EHILLAKQVGVPNMVVFLNKQD 208 (478)
T ss_pred CcEEEEEECCCHHH------HHHHHHHHHhh--CC-EEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEeccc
Confidence 34689999999644 44555666633 33 57889998743222221 1122334569996 56799999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC----CeeEEEeeccCcc-----------------
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKES----------------- 203 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~----lv~f~pls~~d~~----------------- 203 (236)
+...+ +. +..+...+.+++..++ -+.|+|+|+.++.
T Consensus 209 l~~~~-~~----------------------~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy 265 (478)
T PLN03126 209 QVDDE-EL----------------------LELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWV 265 (478)
T ss_pred ccCHH-HH----------------------HHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchh
Confidence 97533 11 1111122333344432 3789999988763
Q ss_pred -cHHHHHHHHHHh
Q 026584 204 -SIRYVLSQIDNC 215 (236)
Q Consensus 204 -~i~~L~~~Id~~ 215 (236)
++..|+.++++.
T Consensus 266 ~~i~~Ll~~l~~~ 278 (478)
T PLN03126 266 DKIYELMDAVDSY 278 (478)
T ss_pred hhHHHHHHHHHHh
Confidence 255788888864
No 108
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.83 E-value=0.00026 Score=56.43 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=60.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHH---HHhhcCCCEEEEecc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLS---AMVQLELPHVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls---~m~~l~lP~InVlsK 142 (236)
..-++|||||-+.-. .. -..+ .+.+ ++++++|+. ++..+-. ..+-.+. .+..-++|.+.|+||
T Consensus 46 ~~~l~Dt~G~~~~~~---~~---~~~~--~~~d-~ii~v~D~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK 113 (162)
T cd04157 46 SFTAFDMSGQGKYRG---LW---EHYY--KNIQ-GIIFVIDSS---DRLRLVVVKDELELLLNHPDIKHRRVPILFFANK 113 (162)
T ss_pred EEEEEECCCCHhhHH---HH---HHHH--ccCC-EEEEEEeCC---cHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeC
Confidence 357999999865211 11 1123 2344 588999975 3333311 1111111 111247999999999
Q ss_pred cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
+|+.+.. ... .+...+. +.+. . -....++++|+++++++++++..|-
T Consensus 114 ~Dl~~~~-~~~--------~~~~~l~-------------~~~~-~-~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 114 MDLPDAL-TAV--------KITQLLG-------------LENI-K-DKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ccccCCC-CHH--------HHHHHhC-------------Cccc-c-CceEEEEEeeCCCCCchHHHHHHHh
Confidence 9996432 100 0000000 0000 0 1125789999999999999998873
No 109
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.82 E-value=0.00026 Score=56.73 Aligned_cols=108 Identities=17% Similarity=0.301 Sum_probs=62.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
++.++|||||-+ |. .+.+..- .+.. ++++++|.. ++..| +..++..+.. .+.+.|.|.|.||+|+
T Consensus 53 ~l~i~Dt~G~~~-~~------~~~~~~~-~~~d-~ii~v~d~~---~~~s~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 53 ELFIFDSAGQEL-YS------DMVSNYW-ESPS-VFILVYDVS---NKASFENCSRWVNKVRT-ASKHMPGVLVGNKMDL 119 (164)
T ss_pred EEEEEECCCHHH-HH------HHHHHHh-CCCC-EEEEEEECc---CHHHHHHHHHHHHHHHH-hCCCCCEEEEEECccc
Confidence 578999999722 21 1122221 2333 688999965 34333 2333322222 2257999999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.+.. +... .....+ ...++ ..++++|+.++.+++.++..+-+.
T Consensus 120 ~~~~-~~~~------------------~~~~~~-------~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 120 ADKA-EVTD------------------AQAQAF-------AQANQ-LKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred cccc-CCCH------------------HHHHHH-------HHHcC-CeEEEEeCCCCCChHHHHHHHHHH
Confidence 6432 1100 000011 11223 468999999999999999887654
No 110
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.81 E-value=0.00013 Score=69.40 Aligned_cols=139 Identities=11% Similarity=0.124 Sum_probs=91.9
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcccC----------CCCEEEEeCCCceeeeecc--chHHHHHHHHh-h-CCCceEE
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELDNYL----------DDDYLVFDCPGQIELFTHV--PVLRNFVDHLK-S-RNFNVCA 103 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~~~----------~~~Yil~D~PGQiElf~~~--~~~~~iv~~L~-~-~~~~~~~ 103 (236)
||-|..+-+|-|...=....++..+-.. ...+.+|||+| +--.. ...+.+-+.-. . .... ++
T Consensus 12 PNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgG---l~~~~~~~l~~~i~~Qa~~Ai~eAD-vi 87 (444)
T COG1160 12 PNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGG---LDDGDEDELQELIREQALIAIEEAD-VI 87 (444)
T ss_pred CCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCC---CCcCCchHHHHHHHHHHHHHHHhCC-EE
Confidence 8999999999888432155554433211 23589999999 33222 23333333322 1 1233 69
Q ss_pred EEeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584 104 VYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL 182 (236)
Q Consensus 104 V~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l 182 (236)
+|++|+..--+| ...++.+ +.+.+.|.|.|.||+|-.+.+...
T Consensus 88 lfvVD~~~Git~~D~~ia~~------Lr~~~kpviLvvNK~D~~~~e~~~------------------------------ 131 (444)
T COG1160 88 LFVVDGREGITPADEEIAKI------LRRSKKPVILVVNKIDNLKAEELA------------------------------ 131 (444)
T ss_pred EEEEeCCCCCCHHHHHHHHH------HHhcCCCEEEEEEcccCchhhhhH------------------------------
Confidence 999999884444 4445433 335679999999999986332100
Q ss_pred HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.-...+|+-..+|+|+.-+.|+.+|+..+=+.++
T Consensus 132 -~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 132 -YEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred -HHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 1124677789999999999999999999999887
No 111
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.81 E-value=0.00013 Score=59.13 Aligned_cols=124 Identities=10% Similarity=0.167 Sum_probs=63.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||-+....+.. .+ .+.. +++++.|.....+-..+...++-.+ ....-+.|.+.|.||+|+..
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~------~~--~~~d-~~i~v~~~~~~~s~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 50 ELALWDTAGQEDYDRLRPL------SY--PDTD-VILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred EEEEEeCCCchhhhhcccc------cc--CCCC-EEEEEEECCCHHHHHHHHHHHHHHH-HhhCCCCCEEEEeeChhccc
Confidence 4689999998543221111 12 1233 3455555443221112111122111 11224899999999999875
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.......... ... ..-. .....++...++...|++.|++++.++++++..|-++
T Consensus 120 ~~~~~~~i~~---------~~~-~~v~----~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 120 DEHTRRELAK---------MKQ-EPVK----PEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred Chhhhhhhhh---------ccC-CCcc----HHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 4311111100 000 0000 0111122344566789999999999999999988754
No 112
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.80 E-value=0.0004 Score=56.27 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=59.9
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhh-cCCCEEEEeccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQ-LELPHVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~-l~lP~InVlsK~ 143 (236)
-.+.+.|||||-++ +.+....- .+.+ ++++++|+..- ..+-.. .+..+...-+ -..|.+.|.||+
T Consensus 44 ~~~~l~D~~G~~~~-------~~~~~~~~-~~ad-~~i~v~D~~~~---~s~~~~~~~~~~~~~~~~~~~~piilv~NK~ 111 (159)
T cd04150 44 ISFTVWDVGGQDKI-------RPLWRHYF-QNTQ-GLIFVVDSNDR---ERIGEAREELQRMLNEDELRDAVLLVFANKQ 111 (159)
T ss_pred EEEEEEECCCCHhH-------HHHHHHHh-cCCC-EEEEEEeCCCH---HHHHHHHHHHHHHHhcHHhcCCCEEEEEECC
Confidence 35799999998442 12222221 2344 58999998642 222221 1211111111 258999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
||.+.. .. ..+...+. +-. +.. .-..+++.|+++++++++++..|-
T Consensus 112 Dl~~~~-~~--------~~i~~~~~-------------~~~-~~~-~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 112 DLPNAM-SA--------AEVTDKLG-------------LHS-LRN-RNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCCCCC-CH--------HHHHHHhC-------------ccc-cCC-CCEEEEEeeCCCCCCHHHHHHHHh
Confidence 985321 00 00101000 000 000 124678999999999999998774
No 113
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.80 E-value=0.00053 Score=55.49 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=62.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHH-HHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.++.++|||||-++ +... ..+ .+.. ++++++|+............+...+......+.|.+.|.||+|+
T Consensus 58 ~~~~~~D~~G~~~~-------~~~~~~~~--~~~~-~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (173)
T cd04155 58 FKLNVWDIGGQRAI-------RPYWRNYF--ENTD-CLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL 127 (173)
T ss_pred EEEEEEECCCCHHH-------HHHHHHHh--cCCC-EEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCC
Confidence 35788999997431 1111 222 2333 58999998753322221111111112222357999999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
.... .... +.+.+. +.++. .....++++|+++++++++++..|-+
T Consensus 128 ~~~~-~~~~--------i~~~l~-------------~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 128 ATAA-PAEE--------IAEALN-------------LHDLR--DRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ccCC-CHHH--------HHHHcC-------------CcccC--CCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 6533 1111 111110 00000 11246789999999999999988743
No 114
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.79 E-value=0.00021 Score=57.88 Aligned_cols=56 Identities=9% Similarity=0.170 Sum_probs=38.9
Q ss_pred cCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHH
Q 026584 132 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 211 (236)
Q Consensus 132 l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~ 211 (236)
-++|.+.|.||+|+.++. . . . +.+.++..+++...+++.|+++++++.+++..
T Consensus 113 ~~~piilv~nK~Dl~~~~--~----~--~-------------------~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 165 (170)
T cd04116 113 ESFPFVVLGNKNDIPERQ--V----S--T-------------------EEAQAWCRENGDYPYFETSAKDATNVAAAFEE 165 (170)
T ss_pred CCCcEEEEEECccccccc--c----C--H-------------------HHHHHHHHHCCCCeEEEEECCCCCCHHHHHHH
Confidence 468999999999986322 0 0 0 00112234566668999999999999999987
Q ss_pred HHH
Q 026584 212 IDN 214 (236)
Q Consensus 212 Id~ 214 (236)
+=+
T Consensus 166 ~~~ 168 (170)
T cd04116 166 AVR 168 (170)
T ss_pred HHh
Confidence 754
No 115
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.78 E-value=0.0004 Score=59.19 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=45.2
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHH---HhhcCCCEEEEeccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA---MVQLELPHVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~---m~~l~lP~InVlsK~ 143 (236)
..+.|+|||||..+ ...+.+.++.. .+ ++||++|+......-..++.++..+-. ...-+.|.+.|.||+
T Consensus 48 ~~~~l~D~pG~~~~------~~~~~~~~~~~-~~-~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~ 119 (203)
T cd04105 48 KKFRLVDVPGHPKL------RDKLLETLKNS-AK-GIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQ 119 (203)
T ss_pred ceEEEEECCCCHHH------HHHHHHHHhcc-CC-EEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecch
Confidence 35889999998764 12334445321 23 699999998763222223333332211 122489999999999
Q ss_pred ccccc
Q 026584 144 DLVTN 148 (236)
Q Consensus 144 DLl~~ 148 (236)
|+...
T Consensus 120 Dl~~a 124 (203)
T cd04105 120 DLFTA 124 (203)
T ss_pred hhccc
Confidence 99753
No 116
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.78 E-value=0.00047 Score=54.55 Aligned_cols=108 Identities=13% Similarity=0.163 Sum_probs=58.2
Q ss_pred EEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh-hcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~-~l~lP~InVlsK~DLl 146 (236)
+-++|||||-+.. .+.. .++ +.. ++++++|......... +..++..+.... .-+.|.+.|.||+|+.
T Consensus 51 ~~i~Dt~G~~~~~-------~l~~~~~~--~~~-~~i~v~~~~~~~s~~~-~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 51 LDILDTAGQEEYS-------AMRDQYMR--TGE-GFLCVFAINSRKSFED-IHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEEECCCCcchH-------HHHHHHHh--cCC-EEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3469999986521 1222 232 233 4666666543221111 112222222111 2378999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
++..... ...+ +...++ ..++++|+++++++++++..+=+.
T Consensus 120 ~~~~~~~--------------------~~~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 120 ARTVSSR--------------------QGQD-------LAKSYG-IPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred cceecHH--------------------HHHH-------HHHHhC-CeEEEecCCCCCCHHHHHHHHHHH
Confidence 5320000 0001 112222 478999999999999999887553
No 117
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.77 E-value=0.00022 Score=58.32 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=62.6
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEeccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLVT 147 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl~ 147 (236)
+.++|||||-+... +-....+ +.. +.++++|+..... -..+..+...+.-. ...+.|.|.|.||+|+..
T Consensus 51 ~~l~D~~g~~~~~~-------~~~~~~~-~~~-~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 51 LEIVDTAGQDEYSI-------LPQKYSI-GIH-GYILVYSVTSRKS-FEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred EEEEECCChHhhHH-------HHHHHHh-hCC-EEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 47899999876221 1111211 223 4677777654222 12233332222222 235789999999999854
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.. ... ... . . .+...++ ..++++|+.+++++..++..+-+.+.
T Consensus 121 ~~-~~~------~~~----~--------~-------~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 121 QR-QVS------TEE----G--------K-------ELAESWG-AAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred cC-ccC------HHH----H--------H-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22 110 000 0 0 1112233 57899999999999999998876544
No 118
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.77 E-value=0.00049 Score=55.78 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=64.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.+.|||||..... ..-..+ + +.. ++++++|+. ++.+| +..++..+.....-+.|.+.|.||+|+
T Consensus 53 ~l~l~D~~g~~~~~~------~~~~~~-~-~ad-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl 120 (167)
T cd01867 53 KLQIWDTAGQERFRT------ITTAYY-R-GAM-GIILVYDIT---DEKSFENIRNWMRNIEEHASEDVERMLVGNKCDM 120 (167)
T ss_pred EEEEEeCCchHHHHH------HHHHHh-C-CCC-EEEEEEECc---CHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 357889999754211 111223 2 333 688899964 44443 333333333333347899999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+.. +. ..+. .. ++...++ ..++++|+++++++.+++..+-+.+
T Consensus 121 ~~~~-~~------~~~~------------~~-------~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 121 EEKR-VV------SKEE------------GE-------ALADEYG-IKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred cccc-CC------CHHH------------HH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7432 11 0000 00 1122333 3789999999999999999887653
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.76 E-value=0.00037 Score=57.21 Aligned_cols=111 Identities=13% Similarity=0.028 Sum_probs=60.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHH-HHhhcCCCEEEEeccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLS-AMVQLELPHVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls-~m~~l~lP~InVlsK~ 143 (236)
-.+.++|||||-++. ... -..++ +.. ++++++|+.. +..+-.. .+..+. ..-.-+.|.+.|.||+
T Consensus 59 ~~~~l~D~~G~~~~~---~~~---~~~~~--~~d-~vi~V~D~s~---~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~ 126 (174)
T cd04153 59 IRFLMWDIGGQESLR---SSW---NTYYT--NTD-AVILVIDSTD---RERLPLTKEELYKMLAHEDLRKAVLLVLANKQ 126 (174)
T ss_pred eEEEEEECCCCHHHH---HHH---HHHhh--cCC-EEEEEEECCC---HHHHHHHHHHHHHHHhchhhcCCCEEEEEECC
Confidence 358999999985421 111 11232 344 5899999754 3333211 121111 1011368999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
|+.... +.+.+...+.. .-+.+. -..++|+|+.++++++.++..|-
T Consensus 127 Dl~~~~---------~~~~i~~~l~~--------------~~~~~~-~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 127 DLKGAM---------TPAEISESLGL--------------TSIRDH-TWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CCCCCC---------CHHHHHHHhCc--------------ccccCC-ceEEEecccCCCCCHHHHHHHHh
Confidence 985421 11111111100 001111 14789999999999999998874
No 120
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.75 E-value=0.00021 Score=65.35 Aligned_cols=162 Identities=15% Similarity=0.232 Sum_probs=98.0
Q ss_pred ChHHHHHHHHHHH-HhhHHHHHHHhccc----------CCCCEEEEeCCCceeeeeccchHHHHHHHHh----h-CCCce
Q 026584 38 PNGGLIYCMEHLE-DNLDDWLAEELDNY----------LDDDYLVFDCPGQIELFTHVPVLRNFVDHLK----S-RNFNV 101 (236)
Q Consensus 38 PNGalv~~me~l~-~n~~~wl~~~i~~~----------~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~----~-~~~~~ 101 (236)
||.|..+--+.+. .++ .-...|.... .+.+-+++||||-|+--.++..... ...++ + .+..
T Consensus 81 PNvGKStLtN~mig~kv-~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~-~s~lq~~~~a~q~AD- 157 (379)
T KOG1423|consen 81 PNVGKSTLTNQMIGQKV-SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLM-MSVLQNPRDAAQNAD- 157 (379)
T ss_pred CCcchhhhhhHhhCCcc-ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHH-HHhhhCHHHHHhhCC-
Confidence 9999998888776 344 4455555432 1346799999998886665554322 22332 2 2344
Q ss_pred EEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhh---hhccccHHHHHHHhhhcchhHHHHH
Q 026584 102 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIE---DYLNPESQFLLSELNQHMAPQFAKL 178 (236)
Q Consensus 102 ~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~---~~l~~~~~~l~~~l~~~~~~~~~~l 178 (236)
|+|.++|+.. +.+.++--++-.+--++ .+|-|.|+||+|.++.+..+. ..++++ ...++
T Consensus 158 ~vvVv~Das~---tr~~l~p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g--------------~l~~~ 219 (379)
T KOG1423|consen 158 CVVVVVDASA---TRTPLHPRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNG--------------ELAKL 219 (379)
T ss_pred EEEEEEeccC---CcCccChHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhcccc--------------ccchh
Confidence 5777899875 55555554443333333 899999999999998763332 222221 00001
Q ss_pred HHHHHHHhhc------------c-CCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026584 179 NKSLIELVDE------------Y-SMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 220 (236)
Q Consensus 179 ~~~l~~li~d------------~-~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e 220 (236)
..++.+-..+ . .+-..+++|+.++++|++|-+.+=.-.+.|+
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 1111111111 1 1346999999999999999988766666554
No 121
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.75 E-value=0.00045 Score=55.26 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=64.1
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
.-++|||||-+... +....- .+.. ++++++|+..-..... +..++..+.....-+.|.+.|.||+|+.+.
T Consensus 51 l~l~D~~G~~~~~~-------~~~~~~-~~~~-~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 120 (161)
T cd04113 51 LQIWDTAGQERFRS-------VTRSYY-RGAA-GALLVYDITNRTSFEA-LPTWLSDARALASPNIVVILVGNKSDLADQ 120 (161)
T ss_pred EEEEECcchHHHHH-------hHHHHh-cCCC-EEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEEchhcchh
Confidence 46899999854221 111221 2333 6888899755322222 233333333344458899999999999642
Q ss_pred hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
. .. +... ...+...++ ..++.+|+++++++.+++..+-+
T Consensus 121 ~-~~------~~~~-------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 121 R-EV------TFLE-------------------ASRFAQENG-LLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred c-cC------CHHH-------------------HHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHH
Confidence 2 10 0000 011222344 78999999999999999988754
No 122
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.75 E-value=0.00042 Score=55.17 Aligned_cols=109 Identities=13% Similarity=0.236 Sum_probs=64.3
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.-++|||||-+.. .+....- .+.. ++++++|+.. +..+ +..++-.+.....-+.|.+.|.||+|+.
T Consensus 51 ~~l~D~~G~~~~~-------~~~~~~~-~~~d-~~ilv~d~~~---~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 51 LQIWDTAGQERFR-------SITSSYY-RGAV-GALLVYDITN---RESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEEECCChHHHH-------HHHHHHh-CCCC-EEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 4688999974322 1222221 2344 5888999754 4433 2223333333333579999999999986
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.. +. +.+ ... ++...++ ..++++|+++++++++++..|-+.+
T Consensus 119 ~~~-~~------~~~------------~~~-------~~~~~~~-~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 119 DQR-QV------SRE------------EAE-------AFAEEHG-LPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred ccc-CC------CHH------------HHH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 422 11 000 011 1122344 4699999999999999999887654
No 123
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.74 E-value=0.00017 Score=60.24 Aligned_cols=123 Identities=11% Similarity=0.195 Sum_probs=66.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH---HHHHHHHHHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS---GCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is---~~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+.|+|||||-+.-. ++. +.-.+.. +++++.| ++++.+|-. .++-.+. ...-+.|.+.|.||+|
T Consensus 49 ~l~i~Dt~G~~~~~~----l~~----~~~~~a~-~~ilv~d---v~~~~sf~~~~~~~~~~i~-~~~~~~piilvgNK~D 115 (189)
T cd04134 49 ELSLWDTAGQEEFDR----LRS----LSYADTD-VIMLCFS---VDSPDSLENVESKWLGEIR-EHCPGVKLVLVALKCD 115 (189)
T ss_pred EEEEEECCCChhccc----ccc----ccccCCC-EEEEEEE---CCCHHHHHHHHHHHHHHHH-HhCCCCCEEEEEEChh
Confidence 467899999965311 111 1111222 3555555 344444432 2322222 2224899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
|.... ....... ......- .. +...++...++...|+++|+++++++++++..+-+..-
T Consensus 116 l~~~~-~~~~~~~--------~~~~~~v-~~----~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 116 LREAR-NERDDLQ--------RYGKHTI-SY----EEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred hccCh-hhHHHHh--------hccCCCC-CH----HHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 97543 1111100 0000000 00 01112344566678999999999999999999887543
No 124
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.73 E-value=0.00063 Score=55.49 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=66.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh-cCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ-LELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~-l~lP~InVlsK~D 144 (236)
.+.++|||||-+... . .-..+ .+.. ++++++|+.. +..+- ..++..+..... -+.|.+.|.||+|
T Consensus 44 ~i~l~Dt~G~~~~~~---~---~~~~~--~~ad-~ii~V~D~s~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 111 (169)
T cd04158 44 KFTIWDVGGKHKLRP---L---WKHYY--LNTQ-AVVFVVDSSH---RDRVSEAHSELAKLLTEKELRDALLLIFANKQD 111 (169)
T ss_pred EEEEEECCCChhcch---H---HHHHh--ccCC-EEEEEEeCCc---HHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcC
Confidence 568999999865321 1 11122 2334 6899999754 33332 222222221112 2489999999999
Q ss_pred cccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccC
Q 026584 145 LVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDA 222 (236)
Q Consensus 145 Ll~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~ 222 (236)
+.... .++..++. +. ++ .....+.|++.|++++.++.+++..+-+.+..++-+
T Consensus 112 l~~~~~~~~~~~~~~--------------------~~----~~-~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~~~ 166 (169)
T cd04158 112 VAGALSVEEMTELLS--------------------LH----KL-CCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGVL 166 (169)
T ss_pred cccCCCHHHHHHHhC--------------------Cc----cc-cCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcccc
Confidence 85321 00111000 00 00 011135788999999999999999998766655443
No 125
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.73 E-value=0.00049 Score=56.46 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=59.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHH-HHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHh-hcCCCEEEEeccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMV-QLELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~-~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~-~l~lP~InVlsK~ 143 (236)
.+.+.|||||-.+ +.+.. .+ .+.+ ++|+++|+.. +..|-.. .+..+..-. .-+.|.+.|.||+
T Consensus 54 ~~~l~Dt~G~~~~-------~~~~~~~~--~~a~-~ii~v~D~t~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~ 120 (168)
T cd04149 54 KFNVWDVGGQDKI-------RPLWRHYY--TGTQ-GLIFVVDSAD---RDRIDEARQELHRIINDREMRDALLLVFANKQ 120 (168)
T ss_pred EEEEEECCCCHHH-------HHHHHHHh--ccCC-EEEEEEeCCc---hhhHHHHHHHHHHHhcCHhhcCCcEEEEEECc
Confidence 5789999998532 11111 22 2344 6899999754 3333222 111111111 1368999999999
Q ss_pred ccccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc-CCeeEEEeeccCcccHHHHHHHHH
Q 026584 144 DLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 144 DLl~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~-~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
|+.... .++..++. +-... ....++|.|+.+++++.+++..|-
T Consensus 121 Dl~~~~~~~~i~~~~~---------------------------~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 121 DLPDAMKPHEIQEKLG---------------------------LTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CCccCCCHHHHHHHcC---------------------------CCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 985321 01111111 00001 125789999999999999998873
No 126
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.73 E-value=0.00051 Score=54.69 Aligned_cols=111 Identities=8% Similarity=0.135 Sum_probs=62.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh-----cCCCEEEEecc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-----LELPHVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~-----l~lP~InVlsK 142 (236)
.+-++|||||-+ |. .+....- .+.. ++++++|+.....-.. +..++-.+.-... .+.|.+.|.||
T Consensus 50 ~l~i~Dt~G~~~-~~------~~~~~~~-~~~d-~~ilv~D~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK 119 (168)
T cd04119 50 RVNFFDLSGHPE-YL------EVRNEFY-KDTQ-GVLLVYDVTDRQSFEA-LDSWLKEMKQEGGPHGNMENIVVVVCANK 119 (168)
T ss_pred EEEEEECCccHH-HH------HHHHHHh-ccCC-EEEEEEECCCHHHHHh-HHHHHHHHHHhccccccCCCceEEEEEEc
Confidence 356999999843 11 1112111 2333 6888999654221111 1222222222221 46899999999
Q ss_pred cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+|+.+.. .. . .+ ... ....+++ ..++++|++++++++.++..|-+.
T Consensus 120 ~Dl~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 120 IDLTKHR-AV----S--ED------------EGR-------LWAESKG-FKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred hhccccc-cc----C--HH------------HHH-------HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 9996322 00 0 00 000 1122444 678999999999999999987654
No 127
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.72 E-value=0.00053 Score=55.17 Aligned_cols=107 Identities=9% Similarity=0.220 Sum_probs=64.1
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
+.+.|||||-+.- .. .-..++ +.. ++++++|+. ++..+ +..++..+.....-++|.+.|.||+|+.
T Consensus 58 ~~~~D~~g~~~~~---~~---~~~~~~--~~d-~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 58 LQIWDTAGQERFR---SI---TQSYYR--SAN-ALILTYDIT---CEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred EEEEECCCcHHHH---HH---HHHHhc--CCC-EEEEEEECc---CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 5778999975421 11 112332 233 588889975 33333 3444444444445589999999999986
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
... ++.. .+.+.+.+. .. ..+++.|+++++++..++..|-+
T Consensus 126 ~~~-~i~~----------------------~~~~~~~~~---~~-~~~~~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 126 ERR-EVSQ----------------------QRAEEFSDA---QD-MYYLETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred ccc-ccCH----------------------HHHHHHHHH---cC-CeEEEeeCCCCCCHHHHHHHHHH
Confidence 433 1110 000111111 12 67999999999999999998754
No 128
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.72 E-value=0.00031 Score=69.41 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=68.2
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
+.++|||||-. |+. ++ .... + ... ++++++|+..--.+..+-+. ..+...+.|.+.|+||+|+...
T Consensus 73 i~~iDTPG~e~-f~~---~~--~~~~-~-~aD-~~IlVvDa~~g~~~qt~e~i-----~~~~~~~vpiIvviNK~D~~~~ 138 (586)
T PRK04004 73 LLFIDTPGHEA-FTN---LR--KRGG-A-LAD-IAILVVDINEGFQPQTIEAI-----NILKRRKTPFVVAANKIDRIPG 138 (586)
T ss_pred EEEEECCChHH-HHH---HH--HHhH-h-hCC-EEEEEEECCCCCCHhHHHHH-----HHHHHcCCCEEEEEECcCCchh
Confidence 78999999854 321 11 1122 1 223 58889998754445555433 2334569999999999998632
Q ss_pred hhH-h-hhhccc---cHHHHHHHhhhcchhHHHHHHHHH---------HHHhhccCC-eeEEEeeccCcccHHHHHHHHH
Q 026584 149 KKE-I-EDYLNP---ESQFLLSELNQHMAPQFAKLNKSL---------IELVDEYSM-VSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 149 ~~~-l-~~~l~~---~~~~l~~~l~~~~~~~~~~l~~~l---------~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id 213 (236)
... . ..|.+. ........ +.....++...+ ..-+.+++. +.|+|+|+.+++++.+|+..+-
T Consensus 139 ~~~~~~~~~~e~~~~~~~~v~~~----f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 139 WKSTEDAPFLESIEKQSQRVQQE----LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred hhhhcCchHHHHHhhhhHHHHHH----HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 100 0 001110 00000000 000111111111 111234444 8999999999999999998875
Q ss_pred H
Q 026584 214 N 214 (236)
Q Consensus 214 ~ 214 (236)
.
T Consensus 215 ~ 215 (586)
T PRK04004 215 G 215 (586)
T ss_pred H
Confidence 4
No 129
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.71 E-value=0.00033 Score=66.29 Aligned_cols=113 Identities=19% Similarity=0.326 Sum_probs=64.0
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc---cchhhHHHHHHHHHHHHhhcCC-CEEEEecc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI---TDVTKFISGCMASLSAMVQLEL-PHVNILSK 142 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~---~dp~~~is~~l~sls~m~~l~l-P~InVlsK 142 (236)
..+.|+|||||-+ ..+.....+. +.. ++++++|+..- ..+...- . +...-.++. |.|.|+||
T Consensus 85 ~~i~iiDtpGh~~------f~~~~~~~~~--~aD-~~ilVvDa~~~~~~~~~~t~~-~----~~~~~~~~~~~iIVviNK 150 (426)
T TIGR00483 85 YEVTIVDCPGHRD------FIKNMITGAS--QAD-AAVLVVAVGDGEFEVQPQTRE-H----AFLARTLGINQLIVAINK 150 (426)
T ss_pred eEEEEEECCCHHH------HHHHHHhhhh--hCC-EEEEEEECCCCCcccCCchHH-H----HHHHHHcCCCeEEEEEEC
Confidence 3578999999754 2233333332 333 68889998643 2222111 0 111122455 46678999
Q ss_pred cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC----eeEEEeeccCcccHHH-----------
Q 026584 143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY----------- 207 (236)
Q Consensus 143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l----v~f~pls~~d~~~i~~----------- 207 (236)
+|+.....+ .+....+.+.+++..++. +.|+|+|+.+++++.+
T Consensus 151 ~Dl~~~~~~----------------------~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~ 208 (426)
T TIGR00483 151 MDSVNYDEE----------------------EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGK 208 (426)
T ss_pred hhccCccHH----------------------HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccch
Confidence 999742200 111112222233444442 7899999999999985
Q ss_pred -HHHHHHHh
Q 026584 208 -VLSQIDNC 215 (236)
Q Consensus 208 -L~~~Id~~ 215 (236)
|+.++++.
T Consensus 209 ~l~~~l~~~ 217 (426)
T TIGR00483 209 TLLEALDAL 217 (426)
T ss_pred HHHHHHhcC
Confidence 77888764
No 130
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.70 E-value=0.0013 Score=58.93 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=42.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhh-HHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~-~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.++.++||||+.. ........++..+ ++++++|+..--.+.. .+ +....+.++|++.|+||+|+
T Consensus 64 ~~i~liDTPG~~d------f~~~~~~~l~~aD---~ailVVDa~~g~~~~t~~~------~~~~~~~~~p~ivviNK~D~ 128 (270)
T cd01886 64 HRINIIDTPGHVD------FTIEVERSLRVLD---GAVAVFDAVAGVEPQTETV------WRQADRYNVPRIAFVNKMDR 128 (270)
T ss_pred EEEEEEECCCcHH------HHHHHHHHHHHcC---EEEEEEECCCCCCHHHHHH------HHHHHHcCCCEEEEEECCCC
Confidence 4689999999654 2233444554333 6889999965333322 22 22234578999999999999
Q ss_pred cc
Q 026584 146 VT 147 (236)
Q Consensus 146 l~ 147 (236)
..
T Consensus 129 ~~ 130 (270)
T cd01886 129 TG 130 (270)
T ss_pred CC
Confidence 75
No 131
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.70 E-value=0.00035 Score=56.62 Aligned_cols=118 Identities=12% Similarity=0.153 Sum_probs=65.6
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccccc
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
-++|||||-+....+. ..-.+.. ++++++|.. ++.+|-.. ++-.+. ...-+.|.+.|.||+|+.
T Consensus 51 ~i~Dt~G~~~~~~~~~--------~~~~~~~-~~ilv~~~~---~~~s~~~~~~~~~~~l~-~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 51 GLYDTAGQEDYDRLRP--------LSYPMTD-VFLICFSVV---NPASFQNVKEEWVPELK-EYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEeCCCccccccccc--------ccCCCCC-EEEEEEECC---CHHHHHHHHHHHHHHHH-hhCCCCCEEEEeEchhhh
Confidence 4799999876322211 1112233 567777754 44444322 222222 224689999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhh-cchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~-~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
........... ... ... ......+...++...|+.+|+.++.++++++..+-++
T Consensus 118 ~~~~~~~~~~~---------~~~~~v~------~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 118 DDPKTLARLND---------MKEKPVT------VEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred cChhhHHHHhh---------ccCCCCC------HHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 54311111100 000 000 0111233445666789999999999999999887554
No 132
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.69 E-value=0.00031 Score=69.49 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=65.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||..+... + .+.. .... ++++++|+..-..|...-+ +......++|.|.|+||+|+..
T Consensus 136 ~i~~iDTPGhe~F~~~----r--~rga--~~aD-iaILVVda~dgv~~qT~e~-----i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 136 MITFLDTPGHEAFTSM----R--ARGA--KVTD-IVVLVVAADDGVMPQTIEA-----ISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEEECCCCcchhhH----H--Hhhh--ccCC-EEEEEEECCCCCCHhHHHH-----HHHHHHcCCCEEEEEECccccc
Confidence 6899999998653321 1 1112 1222 4778888765444444322 2333457999999999999853
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHH
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~ 214 (236)
.. .+.+...+.. ++ -..+.|+. ..|+|+|+.+++++.+|+..|-.
T Consensus 202 ~~----------~e~v~~~L~~-----~g-------~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 202 AN----------PDRVKQELSE-----YG-------LVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CC----------HHHHHHHHHH-----hh-------hhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 21 1111111110 00 01234443 68999999999999999988853
No 133
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.69 E-value=0.0018 Score=57.34 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 176 AKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 176 ~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
..+.+.+.+.+..=.++..++.|+.+..++..|+..+.+.++
T Consensus 225 ~~l~~~l~~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p 266 (268)
T cd04170 225 EELHAGLRRALRAGLLVPVLCGSALTNIGVRELLDALVHLLP 266 (268)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCC
Confidence 356667777777777789999999999999999999987654
No 134
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.68 E-value=0.00082 Score=54.31 Aligned_cols=108 Identities=13% Similarity=0.216 Sum_probs=62.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
++-|+|||||.+.. .+....- .+.. ++++++|+. ++..| +..++-.......-+.|.+.|.||+|+
T Consensus 52 ~l~i~Dt~G~~~~~-------~~~~~~~-~~~~-~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 52 KLQIWDTAGQERFR-------AVTRSYY-RGAA-GALMVYDIT---RRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEEEECCCcHHHH-------HHHHHHh-cCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 35799999986422 2222221 2344 688889964 44444 333332222222346899999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
.+.. .. . .+ ... ++...++ ..|+++|+.+++++.+++..+-+
T Consensus 120 ~~~~-~~----~--~~------------~~~-------~~~~~~~-~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 120 EAQR-DV----T--YE------------EAK-------QFADENG-LLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred cccc-Cc----C--HH------------HHH-------HHHHHcC-CEEEEEECCCCCCHHHHHHHHHH
Confidence 6432 11 0 00 001 1112233 47999999999999998866543
No 135
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.68 E-value=0.00034 Score=55.33 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=62.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.++|||||.+.... .+. .+ .+.. ++++++|+. ++..+- ..++..+.....-++|.+.|+||+|+
T Consensus 50 ~~~~~D~~g~~~~~~~---~~~---~~--~~~~-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~ 117 (162)
T cd04123 50 DLAIWDTAGQERYHAL---GPI---YY--RDAD-GAILVYDIT---DADSFQKVKKWIKELKQMRGNNISLVIVGNKIDL 117 (162)
T ss_pred EEEEEECCchHHHHHh---hHH---Hh--ccCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 3678999998653221 111 12 2334 578888963 333322 22222332233337999999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.... .+.. + ... ++...++ ..++++|+.+++++..++..+-+.
T Consensus 118 ~~~~-~~~~------~------------~~~-------~~~~~~~-~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 118 ERQR-VVSK------S------------EAE-------EYAKSVG-AKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred cccc-CCCH------H------------HHH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 7432 1100 0 000 1111222 467899999999999999988654
No 136
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.68 E-value=0.00039 Score=65.53 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=77.0
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhc----------ccCCCCEEEEeCCCceeeeec--cchHHHHH-HHHhhCCCceEEE
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELD----------NYLDDDYLVFDCPGQIELFTH--VPVLRNFV-DHLKSRNFNVCAV 104 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~~--~~~~~~iv-~~L~~~~~~~~~V 104 (236)
||.|..+-++.|...-..+..+... ......+.++|||||.+ ... ...++... ..+. +.. +++
T Consensus 10 ~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~--~ad-~il 85 (435)
T PRK00093 10 PNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEP-DDDGFEKQIREQAELAIE--EAD-VIL 85 (435)
T ss_pred CCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCC-cchhHHHHHHHHHHHHHH--hCC-EEE
Confidence 6777777777776432011111111 11124579999999876 221 11122211 2222 333 689
Q ss_pred EeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584 105 YLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI 183 (236)
Q Consensus 105 ~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~ 183 (236)
+++|+..-..+ ...+.. .+-+.+.|.|.|+||+|+.+..... .
T Consensus 86 ~vvd~~~~~~~~~~~~~~------~l~~~~~piilv~NK~D~~~~~~~~-----------------------~------- 129 (435)
T PRK00093 86 FVVDGRAGLTPADEEIAK------ILRKSNKPVILVVNKVDGPDEEADA-----------------------Y------- 129 (435)
T ss_pred EEEECCCCCCHHHHHHHH------HHHHcCCcEEEEEECccCccchhhH-----------------------H-------
Confidence 99998653222 222322 2334589999999999964321000 0
Q ss_pred HHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 184 ELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 184 ~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
++ ..+++-.++|+|+.++.++..++..|-+
T Consensus 130 ~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 130 EF-YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred HH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 00 1234446899999999999999998876
No 137
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.67 E-value=0.00035 Score=57.80 Aligned_cols=120 Identities=11% Similarity=0.134 Sum_probs=67.0
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL 145 (236)
..|+|||||-+.... +.. .+ .+.. ++++++|.. ++.+|-.. ++-.+. ...-+.|.|.|.||+|+
T Consensus 51 l~i~Dt~G~~~~~~~----~~~--~~--~~a~-~~ilv~d~~---~~~s~~~~~~~w~~~i~-~~~~~~piilvgnK~Dl 117 (175)
T cd01874 51 LGLFDTAGQEDYDRL----RPL--SY--PQTD-VFLVCFSVV---SPSSFENVKEKWVPEIT-HHCPKTPFLLVGTQIDL 117 (175)
T ss_pred EEEEECCCccchhhh----hhh--hc--ccCC-EEEEEEECC---CHHHHHHHHHHHHHHHH-HhCCCCCEEEEEECHhh
Confidence 468999999653221 111 12 2333 678888864 44444332 221121 12247899999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.... ++..-+. ....+.. -.+...++..+++...|++.|+++++++++++..+-++
T Consensus 118 ~~~~-~~~~~l~-----------~~~~~~v--~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 118 RDDP-STIEKLA-----------KNKQKPI--TPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred hhCh-hhHHHhh-----------hccCCCc--CHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 6543 2211111 0000000 00111233345667899999999999999999887653
No 138
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.67 E-value=0.00095 Score=53.73 Aligned_cols=110 Identities=13% Similarity=0.286 Sum_probs=65.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+-++|||||... ..+....-+ +.. ++++++|+. ++..| +..++..+..+..-+.|.+.|.||+|+
T Consensus 52 ~~~i~D~~G~~~~-------~~~~~~~~~-~~~-~ii~v~d~~---~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl 119 (166)
T cd01869 52 KLQIWDTAGQERF-------RTITSSYYR-GAH-GIIIVYDVT---DQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 119 (166)
T ss_pred EEEEEECCCcHhH-------HHHHHHHhC-cCC-EEEEEEECc---CHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhc
Confidence 4578899997532 112222212 333 688899975 44444 333444333333346899999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .+. .. .- ..+ ...++ +.++++|+++++++.+++..|-+.+
T Consensus 120 ~~~~-~~~------~~------------~~----~~~---~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 120 TDKR-VVD------YS------------EA----QEF---ADELG-IPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred cccc-CCC------HH------------HH----HHH---HHHcC-CeEEEEECCCCcCHHHHHHHHHHHH
Confidence 6433 110 00 00 011 12233 5799999999999999999886644
No 139
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.66 E-value=0.00082 Score=66.59 Aligned_cols=110 Identities=15% Similarity=0.241 Sum_probs=65.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.|+|||||..+ . . .....++. .. ++++++|+..-..+...- .+.. ..+.++|.|.|+||+|+..
T Consensus 71 ~l~liDTPG~~dF-~--~---~v~~~l~~--aD-~aILVvDat~g~~~qt~~-~~~~----~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 71 VLNLIDTPGHVDF-S--Y---EVSRSLAA--CE-GALLLVDAAQGIEAQTLA-NVYL----ALENDLEIIPVINKIDLPS 136 (595)
T ss_pred EEEEEECCCcHHH-H--H---HHHHHHHh--CC-EEEEEecCCCCCCHhHHH-HHHH----HHHcCCCEEEEEECcCCCc
Confidence 3589999999762 1 1 22233433 33 588999986533333221 1211 1246899999999999853
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.. .. ....++ .+.+ .+....++++|++++.++..|+..|.+.+.
T Consensus 137 ~~--~~--------~~~~el---------------~~~l-g~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 137 AD--PE--------RVKKEI---------------EEVI-GLDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred cC--HH--------HHHHHH---------------HHHh-CCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 21 00 000111 1111 111135899999999999999999987654
No 140
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.65 E-value=0.0022 Score=56.21 Aligned_cols=134 Identities=15% Similarity=0.237 Sum_probs=75.6
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.++.++|||||.++. ......++.. . ++++++|+..-..+. ..-+ .....+.++|++.|+||+|+.
T Consensus 64 ~~i~liDTPG~~~f~------~~~~~~l~~a--D-~~IlVvd~~~g~~~~---~~~~--~~~~~~~~~P~iivvNK~D~~ 129 (237)
T cd04168 64 TKVNLIDTPGHMDFI------AEVERSLSVL--D-GAILVISAVEGVQAQ---TRIL--WRLLRKLNIPTIIFVNKIDRA 129 (237)
T ss_pred EEEEEEeCCCccchH------HHHHHHHHHh--C-eEEEEEeCCCCCCHH---HHHH--HHHHHHcCCCEEEEEECcccc
Confidence 468999999997632 2233344322 2 578889986532211 1111 222345799999999999997
Q ss_pred cch-h----Hhhhhcc-------------------ccHHHHHHHhhhc-----------chhHHHHHHHHHHHHhhccCC
Q 026584 147 TNK-K----EIEDYLN-------------------PESQFLLSELNQH-----------MAPQFAKLNKSLIELVDEYSM 191 (236)
Q Consensus 147 ~~~-~----~l~~~l~-------------------~~~~~l~~~l~~~-----------~~~~~~~l~~~l~~li~d~~l 191 (236)
+.. . ++..-+. +-++.|++.+.+. ..-...++...+.+.+..-
T Consensus 130 ~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~-- 207 (237)
T cd04168 130 GADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKR-- 207 (237)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhC--
Confidence 521 1 1111110 0123333333221 1112345566665555543
Q ss_pred eeEEEe---eccCcccHHHHHHHHHHhhc
Q 026584 192 VSFMPL---DLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 192 v~f~pl---s~~d~~~i~~L~~~Id~~~~ 217 (236)
+++|+ |+....|+..|+..|.+.++
T Consensus 208 -~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 208 -KVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred -CeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 55565 99999999999999987653
No 141
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.65 E-value=0.00057 Score=58.03 Aligned_cols=121 Identities=13% Similarity=0.123 Sum_probs=67.0
Q ss_pred EEEEeCCCceeeeeccc--h-HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHh---hcCCCEEEEe
Q 026584 69 YLVFDCPGQIELFTHVP--V-LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMV---QLELPHVNIL 140 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~--~-~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~---~l~lP~InVl 140 (236)
+.|+||||+-+ |.... . .......+ .+.. ++++++|+. ++.+|-.. +.-.+.... .-+.|.|.|.
T Consensus 51 l~i~Dt~G~~~-~~~~~~~e~~~~~~~~~--~~ad-~iilv~D~~---~~~S~~~~~~~~~~i~~~~~~~~~~~piiivg 123 (198)
T cd04142 51 LHILDVPNMQR-YPGTAGQEWMDPRFRGL--RNSR-AFILVYDIC---SPDSFHYVKLLRQQILETRPAGNKEPPIVVVG 123 (198)
T ss_pred EEEEeCCCccc-CCccchhHHHHHHHhhh--ccCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 56999999754 32111 1 11111223 2333 689999964 56655432 211122111 2468999999
Q ss_pred cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH-hhccc
Q 026584 141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN-CIQWG 219 (236)
Q Consensus 141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~-~~~y~ 219 (236)
||+|+.... . .. .+. ..+ +...-.-..|+++|++++.+++.++..+-+ +++-|
T Consensus 124 NK~Dl~~~~-~----~~--~~~------------~~~-------~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 124 NKRDQQRHR-F----AP--RHV------------LSV-------LVRKSWKCGYLECSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred ECccccccc-c----cc--HHH------------HHH-------HHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 999995432 0 00 000 001 111111268999999999999999887765 55555
Q ss_pred ccC
Q 026584 220 EDA 222 (236)
Q Consensus 220 ed~ 222 (236)
...
T Consensus 178 ~~~ 180 (198)
T cd04142 178 RST 180 (198)
T ss_pred CCc
Confidence 443
No 142
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.64 E-value=0.00061 Score=54.57 Aligned_cols=109 Identities=15% Similarity=0.277 Sum_probs=61.2
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHh-hcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMV-QLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~-~l~lP~InVlsK~DL 145 (236)
+-|.|||||-++.. ++. ..++ +.. ++++++|+. ++..|-.. ++..+.-.. ..+.|.+.|.||+|+
T Consensus 51 l~i~Dt~G~~~~~~----~~~--~~~~--~ad-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl 118 (163)
T cd04176 51 LEILDTAGTEQFAS----MRD--LYIK--NGQ-GFIVVYSLV---NQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL 118 (163)
T ss_pred EEEEECCCcccccc----hHH--HHHh--hCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 44799999854321 111 1222 233 577778864 44443322 222222111 257999999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .... .. ...+ ...++ ..++|+|++++.++.+++..+-+.+
T Consensus 119 ~~~~-~~~~------------------~~----~~~~---~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 119 ESER-EVSS------------------AE----GRAL---AEEWG-CPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred hhcC-ccCH------------------HH----HHHH---HHHhC-CEEEEecCCCCCCHHHHHHHHHHhc
Confidence 5422 1000 00 0111 12344 4789999999999999998886543
No 143
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.64 E-value=0.00092 Score=54.06 Aligned_cols=109 Identities=12% Similarity=0.190 Sum_probs=63.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.++|||||-... .+.... -.+.. ++++++|+. ++..|- ..++-.+.....-+.|.+.|.||+||
T Consensus 51 ~~~l~Dt~g~~~~~-------~~~~~~-~~~~~-~~l~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 118 (165)
T cd01865 51 KLQIWDTAGQERYR-------TITTAY-YRGAM-GFILMYDIT---NEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM 118 (165)
T ss_pred EEEEEECCChHHHH-------HHHHHH-ccCCc-EEEEEEECC---CHHHHHHHHHHHHHHHHhCCCCCCEEEEEECccc
Confidence 46789999976421 111222 12333 688889975 344433 33332222222236899999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.+.. ... .+ ... ++.+.++ ..++++|++++.++.+++..+-+.
T Consensus 119 ~~~~-~~~------~~------------~~~-------~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 119 EDER-VVS------SE------------RGR-------QLADQLG-FEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred Cccc-ccC------HH------------HHH-------HHHHHcC-CEEEEEECCCCCCHHHHHHHHHHH
Confidence 6533 110 00 001 1112223 379999999999999999988654
No 144
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.62 E-value=0.0009 Score=53.71 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=62.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+-++|||||.+. +.+....-+ +. .++++++|+. ++..|-. .++..+......+.|.+.|.||+|+
T Consensus 53 ~~~l~D~~g~~~~-------~~~~~~~~~-~~-~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 53 KAQIWDTAGQERY-------RAITSAYYR-GA-VGALLVYDIT---KKQTFENVERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEeCCChHHH-------HHHHHHHHC-CC-CEEEEEEECc---CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 3578999998541 111121112 22 3578889976 4444432 2222222222236899999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.... .. . . ....++ ++ ..+ +.++++|+.++++++.++..+-+.
T Consensus 121 ~~~~-~~----~--~------------~~~~~~----~~---~~~-~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 121 RHLR-AV----P--T------------EEAKAF----AE---KNG-LSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred cccc-cC----C--H------------HHHHHH----HH---HcC-CEEEEEECCCCCCHHHHHHHHHHH
Confidence 6432 11 0 0 001111 11 122 579999999999999999988654
No 145
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.60 E-value=0.0011 Score=53.58 Aligned_cols=107 Identities=9% Similarity=0.166 Sum_probs=59.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhh---cCCCEEEEecc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ---LELPHVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~---l~lP~InVlsK 142 (236)
.+.++|||||-+... +++ ..+ + +.. ++++++|... +..| +..++-.+..... -++|.+.|.||
T Consensus 50 ~l~i~Dt~G~~~~~~----~~~--~~~-~-~~~-~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (165)
T cd04140 50 TLQITDTTGSHQFPA----MQR--LSI-S-KGH-AFILVYSVTS---KQSLEELKPIYELICEIKGNNIEKIPIMLVGNK 117 (165)
T ss_pred EEEEEECCCCCcchH----HHH--HHh-h-cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEC
Confidence 356999999965321 111 112 1 233 5677788543 3333 2222222221111 46899999999
Q ss_pred cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
+|+.+.. ++.. + . - .. ....++ ..|+++|+++++++.+++..|-
T Consensus 118 ~Dl~~~~-~v~~----------~-----~---~----~~---~~~~~~-~~~~e~SA~~g~~v~~~f~~l~ 161 (165)
T cd04140 118 CDESHKR-EVSS----------N-----E---G----AA---CATEWN-CAFMETSAKTNHNVQELFQELL 161 (165)
T ss_pred ccccccC-eecH----------H-----H---H----HH---HHHHhC-CcEEEeecCCCCCHHHHHHHHH
Confidence 9996422 1100 0 0 0 00 112333 5799999999999999998874
No 146
>PTZ00099 rab6; Provisional
Probab=97.60 E-value=0.00066 Score=56.69 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=65.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
++.|+|||||-..... .. ..+ .+.. ++++++|+.. +..|= ..++..+.....-++|.|.|.||+||
T Consensus 30 ~l~iwDt~G~e~~~~~---~~---~~~--~~ad-~~ilv~D~t~---~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL 97 (176)
T PTZ00099 30 RLQLWDTAGQERFRSL---IP---SYI--RDSA-AAIVVYDITN---RQSFENTTKWIQDILNERGKDVIIALVGNKTDL 97 (176)
T ss_pred EEEEEECCChHHhhhc---cH---HHh--CCCc-EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc
Confidence 5789999999542221 11 112 2344 6888899654 33221 12222221111236888999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.... .. . .+ ........++. .|++.|+++++++..++..|-+.+.-
T Consensus 98 ~~~~-~v----~--~~-------------------e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 98 GDLR-KV----T--YE-------------------EGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cccc-CC----C--HH-------------------HHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5422 11 0 00 00122334443 68999999999999999999877643
No 147
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.60 E-value=0.0016 Score=56.52 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=63.0
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE-Eecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN-ILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In-VlsK~D 144 (236)
...+.++||||.+ ..+++.++.. . ++++++|+..-..+...- .+......+.|.+. |+||+|
T Consensus 82 ~~~i~~vDtPg~~---------~~~l~~ak~a--D-vVllviDa~~~~~~~~~~-----i~~~l~~~g~p~vi~VvnK~D 144 (225)
T cd01882 82 KRRLTFIECPNDI---------NAMIDIAKVA--D-LVLLLIDASFGFEMETFE-----FLNILQVHGFPRVMGVLTHLD 144 (225)
T ss_pred CceEEEEeCCchH---------HHHHHHHHhc--C-EEEEEEecCcCCCHHHHH-----HHHHHHHcCCCeEEEEEeccc
Confidence 4568999999964 3445555433 3 589999987533332211 12233346889655 999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCc-----ccHHHHHHHHHHhh
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE-----SSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~-----~~i~~L~~~Id~~~ 216 (236)
+++....+++.. +.+.+.+.. +-+...+++|+|+.+. ....+++..|+..-
T Consensus 145 ~~~~~~~~~~~~-------------------~~l~~~~~~--~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~ 200 (225)
T cd01882 145 LFKKNKTLRKTK-------------------KRLKHRFWT--EVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMK 200 (225)
T ss_pred cCCcHHHHHHHH-------------------HHHHHHHHH--hhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCC
Confidence 985431221111 111111110 0123478999986655 44566777777643
No 148
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.0008 Score=67.57 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=72.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.-.++||||| |.+..++=.+- +.-+++ ++.++|-++-..|...=|. ..+-+=..|+|.+|||+|-+
T Consensus 540 Pg~lvIdtpg-------hEsFtnlRsrg-sslC~~-aIlvvdImhGlepqtiESi-----~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 540 PGLLVIDTPG-------HESFTNLRSRG-SSLCDL-AILVVDIMHGLEPQTIESI-----NLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred CeeEEecCCC-------chhhhhhhhcc-ccccce-EEEEeehhccCCcchhHHH-----HHHHhcCCCeEEeehhhhhh
Confidence 3579999999 23333322222 122443 7888999998899887664 44444589999999999975
Q ss_pred cchhHhhhhccccHHHHHHHhhh-------cchhHHHHHHHHHHHH-------hh--ccC-CeeEEEeeccCcccHHHHH
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQ-------HMAPQFAKLNKSLIEL-------VD--EYS-MVSFMPLDLRKESSIRYVL 209 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~-------~~~~~~~~l~~~l~~l-------i~--d~~-lv~f~pls~~d~~~i~~L~ 209 (236)
- .|-......+.+.+.. .+..++......+++- .. +-+ .++.+|-|+..++||-+|+
T Consensus 606 Y------gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl 679 (1064)
T KOG1144|consen 606 Y------GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLL 679 (1064)
T ss_pred c------ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHH
Confidence 2 2222111111122211 1111222211111110 11 112 3899999999999999998
Q ss_pred HHHH
Q 026584 210 SQID 213 (236)
Q Consensus 210 ~~Id 213 (236)
..+=
T Consensus 680 ~llv 683 (1064)
T KOG1144|consen 680 LLLV 683 (1064)
T ss_pred HHHH
Confidence 7653
No 149
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.60 E-value=0.00065 Score=55.09 Aligned_cols=108 Identities=12% Similarity=0.158 Sum_probs=61.4
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHH-HhhcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSA-MVQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~-m~~l~lP~InVlsK~DL 145 (236)
.-++|||||-++.. +.+..-+ +.. .+|+++|.. ++..+-+. +.-.+.- ..+-+.|.+.|.||+|+
T Consensus 51 ~~i~Dt~G~~~~~~-------~~~~~~~-~~~-~~vlv~~~~---~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~ 118 (168)
T cd04177 51 LEILDTAGTEQFTA-------MRELYIK-SGQ-GFLLVYSVT---SEASLNELGELREQVLRIKDSDNVPMVLVGNKADL 118 (168)
T ss_pred EEEEeCCCcccchh-------hhHHHHh-hCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhc
Confidence 46899999876422 1122211 222 456666654 33333222 1111111 12347999999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
.... .. . .+ . ...+...++.+.+++.|+++++++..++..+=+
T Consensus 119 ~~~~-~~----~--~~------------~-------~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 119 EDDR-QV----S--RE------------D-------GVSLSQQWGNVPFYETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred cccC-cc----C--HH------------H-------HHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHH
Confidence 6432 11 0 00 0 001223566678999999999999999988754
No 150
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.59 E-value=0.0023 Score=51.93 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=62.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+.|.|||||-++ +.+.....+ +.. ++++++|+. ++..|-.. ++..+.....-+.|.|.|.||+|+
T Consensus 54 ~~~i~Dt~G~~~~-------~~~~~~~~~-~~d-~il~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 121 (168)
T cd01866 54 KLQIWDTAGQESF-------RSITRSYYR-GAA-GALLVYDIT---RRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDL 121 (168)
T ss_pred EEEEEECCCcHHH-------HHHHHHHhc-cCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 5789999997542 222222212 333 589999976 45544322 222222212237899999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.+.. .. ..+. .+. +....+ ..++++|+.+++++.+++..+-+.
T Consensus 122 ~~~~-~~------~~~~------------~~~-------~~~~~~-~~~~e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 122 ESRR-EV------SYEE------------GEA-------FAKEHG-LIFMETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred cccc-CC------CHHH------------HHH-------HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 6432 11 0000 001 111222 468999999999999998766443
No 151
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.58 E-value=0.00063 Score=55.76 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=62.2
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
+.+.|++||-+...... .++ .+.. ++++++|+ +++..|-...-+--.....-+.|.+.|.||+|+.+.
T Consensus 56 l~~~d~~g~~~~~~~~~------~~~--~~~d-~~llv~d~---~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 56 LILREVGEDEVAILLND------AEL--AACD-VACLVYDS---SDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred EEEEecCCcccccccch------hhh--hcCC-EEEEEEeC---CCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccc
Confidence 45667777765321110 112 2344 57889996 455554432110001111237999999999998643
Q ss_pred hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
. .. ... .. . ++...++...++++|+.++++++.++..+-+...
T Consensus 124 ~-~~--~~~-~~---------------~-------~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 124 Q-QR--YEV-QP---------------D-------EFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred c-cc--ccc-CH---------------H-------HHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 2 10 000 00 0 1123345445689999999999999999877653
No 152
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.57 E-value=0.0014 Score=52.35 Aligned_cols=109 Identities=10% Similarity=0.144 Sum_probs=61.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl 146 (236)
++.++|||||-+.... ....-+ +.. ++++++|+.......... .++..+... ..-+.|.+.|.||+|+.
T Consensus 50 ~~~l~D~~g~~~~~~~-------~~~~~~-~~d-~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 50 KLAIWDTAGQERFRTL-------TSSYYR-GAQ-GVILVYDVTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEECCCchhhhhh-------hHHHhC-CCC-EEEEEEECCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 4688899997543211 111212 334 588889975433322222 222222222 13579999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
.... +.+ ...+ +.... -..++++|+++++++++++..+=+
T Consensus 120 ~~~~--------~~~------------~~~~-------~~~~~-~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 120 NREV--------TRE------------EGLK-------FARKH-NMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred cccc--------CHH------------HHHH-------HHHHc-CCEEEEEecCCCCCHHHHHHHHHH
Confidence 3320 000 0011 11122 257999999999999999987644
No 153
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.55 E-value=0.0013 Score=54.84 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=61.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh----cCCCEEEEeccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ----LELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~----l~lP~InVlsK~ 143 (236)
.+-|.|||||-+. +.+....- .+.. +++|++|+.. +..+-... .-+...++ -+.|.+.|.||+
T Consensus 62 ~~~i~D~~Gq~~~-------~~~~~~~~-~~a~-~iI~V~D~s~---~~s~~~~~-~~l~~~l~~~~~~~~piilv~NK~ 128 (181)
T PLN00223 62 SFTVWDVGGQDKI-------RPLWRHYF-QNTQ-GLIFVVDSND---RDRVVEAR-DELHRMLNEDELRDAVLLVFANKQ 128 (181)
T ss_pred EEEEEECCCCHHH-------HHHHHHHh-ccCC-EEEEEEeCCc---HHHHHHHH-HHHHHHhcCHhhCCCCEEEEEECC
Confidence 5789999998431 22222221 2344 5899999753 33332211 11111111 278999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
|+-... . .+.+...+ ++ ... .-..+++.|+++++++.+++..+-+.+
T Consensus 129 Dl~~~~-~--------~~~~~~~l----------------~l-~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 129 DLPNAM-N--------AAEITDKL----------------GL-HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCCC-C--------HHHHHHHh----------------Cc-cccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 985332 1 11111111 00 011 113577899999999999999886543
No 154
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.54 E-value=0.0011 Score=62.17 Aligned_cols=140 Identities=14% Similarity=0.161 Sum_probs=81.6
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhc----------ccCCCCEEEEeCCCceeeeeccchHHHHHHHH-h-h-CCCceEEE
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELD----------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-K-S-RNFNVCAV 104 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L-~-~-~~~~~~~V 104 (236)
||-|.-.-++.|..+-.....+... ......+.|+||||+.+ ....+...+... . . .+.. +++
T Consensus 8 ~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~---~~~~~~~~~~~~~~~~~~~ad-~vl 83 (429)
T TIGR03594 8 PNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE---DDDGLDKQIREQAEIAIEEAD-VIL 83 (429)
T ss_pred CCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC---cchhHHHHHHHHHHHHHhhCC-EEE
Confidence 6777777777776532111111111 01133588999999643 222222222211 1 1 2333 689
Q ss_pred EeecCCCccchhh-HHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584 105 YLLDSQFITDVTK-FISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI 183 (236)
Q Consensus 105 ~LiD~~~~~dp~~-~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~ 183 (236)
+++|+..-..+.+ .+.. .+-+.+.|.+.|.||+|+.+..... .
T Consensus 84 ~vvD~~~~~~~~d~~i~~------~l~~~~~piilVvNK~D~~~~~~~~-----------------------~------- 127 (429)
T TIGR03594 84 FVVDGREGLTPEDEEIAK------WLRKSGKPVILVANKIDGKKEDAVA-----------------------A------- 127 (429)
T ss_pred EEEeCCCCCCHHHHHHHH------HHHHhCCCEEEEEECccCCcccccH-----------------------H-------
Confidence 9999975333322 2322 2335789999999999986533100 0
Q ss_pred HHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 184 ELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 184 ~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
+ ...+++..++++|+..+.++..++..+-+.+.-
T Consensus 128 ~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 128 E-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred H-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 0 123455678999999999999999999887643
No 155
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.53 E-value=0.00069 Score=56.50 Aligned_cols=109 Identities=14% Similarity=0.244 Sum_probs=62.9
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhh---cCCCEEEEeccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ---LELPHVNILSKM 143 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~---l~lP~InVlsK~ 143 (236)
+-|.|||||-+... ++. ..++ +.. ++++++|.. ++..| +..++..+..... -+.|.|.|.||+
T Consensus 49 l~i~Dt~G~~~~~~----~~~--~~~~--~ad-~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~ 116 (190)
T cd04144 49 LEVLDTAGQEEYTA----LRD--QWIR--EGE-GFILVYSIT---SRSTFERVERFREQIQRVKDESAADVPIMIVGNKC 116 (190)
T ss_pred EEEEECCCchhhHH----HHH--HHHH--hCC-EEEEEEECC---CHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEECh
Confidence 56799999854222 111 1232 223 567777864 33333 2233333322221 368999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
|+.... .+.. .. ..++...++ ..|+++|+.+++++.+++..+-+.+
T Consensus 117 Dl~~~~-~v~~------------------~~-------~~~~~~~~~-~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 117 DKVYER-EVST------------------EE-------GAALARRLG-CEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred hccccC-ccCH------------------HH-------HHHHHHHhC-CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 996432 1100 00 011223445 4799999999999999999888754
No 156
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.53 E-value=0.0021 Score=53.68 Aligned_cols=113 Identities=12% Similarity=0.217 Sum_probs=61.3
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.-|.||+||-++.. +.... -.+.. ++++++|. +++..|-. .++--+.....-..| |.|.||+||.
T Consensus 51 l~iwDt~G~~~~~~-------~~~~~-~~~a~-~iilv~D~---t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 51 FSIWDLGGQREFIN-------MLPLV-CNDAV-AILFMFDL---TRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred EEEEeCCCchhHHH-------hhHHH-CcCCC-EEEEEEEC---cCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 46778888855221 11111 12333 57888995 44554433 232222222123466 6789999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
... ... .. ....+...++-..++ ..|+++|+++++++++++..+-+.+
T Consensus 118 ~~~-~~~-----~~---------------~~~~~~~~~~a~~~~-~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 118 ADL-PPE-----EQ---------------EEITKQARKYAKAMK-APLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred ccc-cch-----hh---------------hhhHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 421 000 00 000011112223344 6799999999999999999887654
No 157
>PLN03118 Rab family protein; Provisional
Probab=97.52 E-value=0.0015 Score=55.36 Aligned_cols=111 Identities=13% Similarity=0.142 Sum_probs=64.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHH-hhcCCCEEEEeccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAM-VQLELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m-~~l~lP~InVlsK~ 143 (236)
.+.|+|||||.+... + .-..+ + +.. ++|+++|+.. +..|-.. +.--+... ..-++|.+.|.||+
T Consensus 63 ~l~l~Dt~G~~~~~~----~--~~~~~-~-~~d-~~vlv~D~~~---~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~ 130 (211)
T PLN03118 63 KLTIWDTAGQERFRT----L--TSSYY-R-NAQ-GIILVYDVTR---RETFTNLSDVWGKEVELYSTNQDCVKMLVGNKV 130 (211)
T ss_pred EEEEEECCCchhhHH----H--HHHHH-h-cCC-EEEEEEECCC---HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 458999999865321 1 11223 2 333 5888899754 3333322 11111111 12468999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
|+.... .. . .+. .. .+..+++ ..|+++|+++++++++++..+-+.+.
T Consensus 131 Dl~~~~-~i----~--~~~------------~~-------~~~~~~~-~~~~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 131 DRESER-DV----S--REE------------GM-------ALAKEHG-CLFLECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred cccccC-cc----C--HHH------------HH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 996432 11 0 000 00 1112233 46999999999999999999987653
No 158
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.51 E-value=0.0021 Score=53.39 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=64.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHH-HHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHH-hhcCCCEEEEeccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAM-VQLELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m-~~l~lP~InVlsK~ 143 (236)
++.++|||||... +.+. .++ .+.. +++|++|+. ++..+-.. .+..+.-. ..-+.|.+.|+||+
T Consensus 62 ~~~~~D~~G~~~~-------~~~~~~~~--~~ad-~ii~vvD~~---~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~ 128 (184)
T smart00178 62 KFTTFDLGGHQQA-------RRLWKDYF--PEVN-GIVYLVDAY---DKERFAESKRELDALLSDEELATVPFLILGNKI 128 (184)
T ss_pred EEEEEECCCCHHH-------HHHHHHHh--CCCC-EEEEEEECC---cHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCc
Confidence 5789999998532 1111 223 2444 689999985 45444322 22221111 11479999999999
Q ss_pred ccccc--hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 144 DLVTN--KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 144 DLl~~--~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
|+... ..++.+.+.. .... . ...+ .......++|.|+.+++++.+++..+-+
T Consensus 129 Dl~~~~~~~~i~~~l~l---------~~~~---~-----~~~~--~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 129 DAPYAASEDELRYALGL---------TNTT---G-----SKGK--VGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccCCCCHHHHHHHcCC---------Cccc---c-----cccc--cCCceeEEEEeecccCCChHHHHHHHHh
Confidence 98532 1122222210 0000 0 0000 0234578999999999999999988754
No 159
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.51 E-value=0.00074 Score=55.79 Aligned_cols=118 Identities=17% Similarity=0.225 Sum_probs=63.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHH-HHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHh-hcCCCEEEEeccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV-QLELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv-~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~-~l~lP~InVlsK~ 143 (236)
.+.++|||||.+. +.+. ..+ .+.+ .+++++|+. ++..+- ...+..+.-.. .-+.|.+.|.||+
T Consensus 64 ~~~l~D~~G~~~~-------~~~~~~~~--~~ad-~iilV~D~~---~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~ 130 (190)
T cd00879 64 KFKTFDLGGHEQA-------RRLWKDYF--PEVD-GIVFLVDAA---DPERFQESKEELDSLLSDEELANVPFLILGNKI 130 (190)
T ss_pred EEEEEECCCCHHH-------HHHHHHHh--ccCC-EEEEEEECC---cHHHHHHHHHHHHHHHcCccccCCCEEEEEeCC
Confidence 5689999998542 1221 223 2334 578899975 333331 11222211111 1369999999999
Q ss_pred ccccch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHH
Q 026584 144 DLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 144 DLl~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
|+.... .++..++. . ++....+.+.+.+... ...+++.|+++++++.+++..+-+
T Consensus 131 Dl~~~~~~~~~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 131 DLPGAVSEEELRQALG-----------L-----YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred CCCCCcCHHHHHHHhC-----------c-----ccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 986421 11111111 0 0000001112222322 267999999999999999998854
No 160
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.50 E-value=0.0021 Score=63.82 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=65.7
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
+-|+|||||.++- ....+.++.. . ++++++|+..-..+...- .+.. ....++|.|.|+||+|+...
T Consensus 76 lnLiDTPGh~dF~------~~v~~sl~~a--D-~aILVVDas~gv~~qt~~-~~~~----~~~~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 76 LNLIDTPGHVDFS------YEVSRSLAAC--E-GALLVVDASQGVEAQTLA-NVYL----ALENDLEIIPVLNKIDLPAA 141 (600)
T ss_pred EEEEECCCcHHHH------HHHHHHHHHC--C-EEEEEEECCCCCCHHHHH-HHHH----HHHCCCCEEEEEECCCCCcc
Confidence 5799999998732 1222334332 3 588999986533333321 1211 23468999999999998532
Q ss_pred hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
. ... ...++ .+.+ ......++|+|+.++.++..|+..|-+.+.-
T Consensus 142 ~--~~~--------v~~ei---------------~~~l-g~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 142 D--PER--------VKQEI---------------EDVI-GIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred c--HHH--------HHHHH---------------HHHh-CCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1 110 00111 1110 0111358999999999999999999876643
No 161
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.50 E-value=0.00051 Score=65.76 Aligned_cols=132 Identities=14% Similarity=0.102 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchH-----HHHHHHHhhCCCceE
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVL-----RNFVDHLKSRNFNVC 102 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~-----~~iv~~L~~~~~~~~ 102 (236)
||.|.-.-++.|...-..+..+.... .....+.++||||+-+ + .+.+ ++....++ +.. +
T Consensus 224 ~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~-~--~~~ie~~gi~~~~~~~~--~aD-~ 297 (449)
T PRK05291 224 PNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE-T--DDEVEKIGIERSREAIE--EAD-L 297 (449)
T ss_pred CCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC-C--ccHHHHHHHHHHHHHHH--hCC-E
Confidence 78888888888874310222221111 1123578999999865 2 2222 22223332 334 5
Q ss_pred EEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584 103 AVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL 182 (236)
Q Consensus 103 ~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l 182 (236)
+++++|+..-...... . ++.. .-+.|.+.|+||+|+.+.. ...
T Consensus 298 il~VvD~s~~~s~~~~-~--~l~~----~~~~piiiV~NK~DL~~~~-~~~----------------------------- 340 (449)
T PRK05291 298 VLLVLDASEPLTEEDD-E--ILEE----LKDKPVIVVLNKADLTGEI-DLE----------------------------- 340 (449)
T ss_pred EEEEecCCCCCChhHH-H--HHHh----cCCCCcEEEEEhhhccccc-hhh-----------------------------
Confidence 8999998543322221 1 1111 4579999999999996433 100
Q ss_pred HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
......++++|++++++++.|+..|-+.+.
T Consensus 341 -----~~~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 341 -----EENGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred -----hccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 011145678888888888888888776553
No 162
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.47 E-value=0.0024 Score=51.50 Aligned_cols=103 Identities=12% Similarity=0.215 Sum_probs=59.8
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.-++|||||-. |. .+....- .+.. ++++++|+. ++..+ +..++-.+.. ..-+.|.+.|.||+|+.
T Consensus 51 ~~i~Dt~G~~~-~~------~~~~~~~-~~~d-~~i~v~d~~---~~~s~~~~~~~~~~i~~-~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 51 VDFWDTAGQER-FQ------TMHASYY-HKAH-ACILVFDVT---RKITYKNLSKWYEELRE-YRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEEeCCCchh-hh------hhhHHHh-CCCC-EEEEEEECC---CHHHHHHHHHHHHHHHH-hCCCCcEEEEEECccCc
Confidence 45899999864 21 1222221 2333 688899964 34443 2223222221 12379999999999983
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
... . . ... ++.+.++ ..++++|++++.++++++..+-+
T Consensus 118 ~~~--~------------~--------~~~-------~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 118 PSV--T------------Q--------KKF-------NFAEKHN-LPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred hhH--H------------H--------HHH-------HHHHHcC-CeEEEEeCCCCCCHHHHHHHHHH
Confidence 211 0 0 000 1112232 57899999999999999988865
No 163
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.44 E-value=0.0039 Score=51.87 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=60.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHH-HHHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASL-SAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sl-s~m~~l~lP~InVlsK~D 144 (236)
.+.++|||||-+ .+.+....- .+.+ ++||++|+. ++..+-... +..+ .....-..|.+.|.||+|
T Consensus 62 ~~~l~D~~G~~~-------~~~~~~~~~-~~ad-~iI~v~D~t---~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 129 (182)
T PTZ00133 62 KFTMWDVGGQDK-------LRPLWRHYY-QNTN-GLIFVVDSN---DRERIGDAREELERMLSEDELRDAVLLVFANKQD 129 (182)
T ss_pred EEEEEECCCCHh-------HHHHHHHHh-cCCC-EEEEEEeCC---CHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCC
Confidence 478999999843 122222221 2344 589999975 344433222 1111 100112689999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+.... .. +.+...+.- .-+.. ..+.+.+.|+.+++++.+++..|-+.
T Consensus 130 l~~~~-~~--------~~i~~~l~~--------------~~~~~-~~~~~~~~Sa~tg~gv~e~~~~l~~~ 176 (182)
T PTZ00133 130 LPNAM-ST--------TEVTEKLGL--------------HSVRQ-RNWYIQGCCATTAQGLYEGLDWLSAN 176 (182)
T ss_pred CCCCC-CH--------HHHHHHhCC--------------CcccC-CcEEEEeeeCCCCCCHHHHHHHHHHH
Confidence 85321 00 011011100 00011 12457799999999999999988654
No 164
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.44 E-value=0.0019 Score=54.20 Aligned_cols=113 Identities=12% Similarity=0.234 Sum_probs=64.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh-cCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ-LELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~-l~lP~InVlsK~D 144 (236)
..-|+|||||-+. +. ++.. .+ .+.. ++++++|+. ++..|-. .++..+..... -+.|.|.|.||+|
T Consensus 48 ~l~i~D~~G~~~~---~~-~~~~--~~--~~ad-~vilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D 115 (198)
T cd04147 48 TLDILDTSGSYSF---PA-MRKL--SI--QNSD-AFALVYAVD---DPESFEEVERLREEILEVKEDKFVPIVVVGNKAD 115 (198)
T ss_pred EEEEEECCCchhh---hH-HHHH--Hh--hcCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccc
Confidence 4578999997652 11 2111 12 2333 588899965 4444432 22222222222 4799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+.+....+. ... .... .. ..++ ..++++|+.++.++.+++..+-+.++
T Consensus 116 l~~~~~~v~------~~~-----------~~~~-----~~--~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 116 SLEEERQVP------AKD-----------ALST-----VE--LDWN-CGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred ccccccccc------HHH-----------HHHH-----HH--hhcC-CcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 875321110 000 0000 00 1222 56899999999999999999887655
No 165
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.0016 Score=63.01 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=73.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCC--ceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNF--NVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~--~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.-.++||||. .-+..+++.+. .=++++++|+.----|...-| ..-.-..+.|+|.++||+|.
T Consensus 56 ~itFiDTPGH-----------eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEA-----I~hak~a~vP~iVAiNKiDk 119 (509)
T COG0532 56 GITFIDTPGH-----------EAFTAMRARGASVTDIAILVVAADDGVMPQTIEA-----INHAKAAGVPIVVAINKIDK 119 (509)
T ss_pred eEEEEcCCcH-----------HHHHHHHhcCCccccEEEEEEEccCCcchhHHHH-----HHHHHHCCCCEEEEEecccC
Confidence 5688999993 22333443333 346899999887777777654 55666689999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~ 214 (236)
.... ++....++.+.. =..+.|+- +.|+|+|+++++++.+|+..|=-
T Consensus 120 ~~~n----------p~~v~~el~~~g------------l~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 120 PEAN----------PDKVKQELQEYG------------LVPEEWGGDVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred CCCC----------HHHHHHHHHHcC------------CCHhhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence 7432 111112222110 12355655 89999999999999999988754
No 166
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.43 E-value=0.0023 Score=50.98 Aligned_cols=107 Identities=12% Similarity=0.249 Sum_probs=60.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
++.|+|||||-+.. .+.+..-+ +.. +++++.|+. ++..|-. .++..+. ...-++|.+.|.||+|+
T Consensus 52 ~~~i~D~~G~~~~~-------~~~~~~~~-~~~-~~v~v~d~~---~~~s~~~l~~~~~~~~-~~~~~~p~iiv~nK~Dl 118 (162)
T cd04106 52 RLMLWDTAGQEEFD-------AITKAYYR-GAQ-ACILVFSTT---DRESFEAIESWKEKVE-AECGDIPMVLVQTKIDL 118 (162)
T ss_pred EEEEeeCCchHHHH-------HhHHHHhc-CCC-EEEEEEECC---CHHHHHHHHHHHHHHH-HhCCCCCEEEEEEChhc
Confidence 46889999985421 11122212 333 466777754 4444332 2221111 11248999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
.+.. ... . + . ..++...++ ..++++|++++.++++++..|-+
T Consensus 119 ~~~~-~v~------~----~--------~-------~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 119 LDQA-VIT------N----E--------E-------AEALAKRLQ-LPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred cccc-CCC------H----H--------H-------HHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHH
Confidence 7543 110 0 0 0 001122333 37899999999999999988753
No 167
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00073 Score=61.70 Aligned_cols=77 Identities=22% Similarity=0.453 Sum_probs=57.0
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEE-ecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI-LSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InV-lsK~D 144 (236)
+.+|--+|||| |.+.+++++.--.+.+.-..+|--.|...-......+ ++ -..+.|+|.| +||+|
T Consensus 74 ~rhyahVDcPG------HaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL------la--rqvGvp~ivvflnK~D 139 (394)
T COG0050 74 NRHYAHVDCPG------HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL------LA--RQVGVPYIVVFLNKVD 139 (394)
T ss_pred CceEEeccCCC------hHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh------hh--hhcCCcEEEEEEeccc
Confidence 46899999999 8999999888877777777777777776655555543 11 2369999988 79999
Q ss_pred cccchhHhhhhcc
Q 026584 145 LVTNKKEIEDYLN 157 (236)
Q Consensus 145 Ll~~~~~l~~~l~ 157 (236)
++++. ++.+..+
T Consensus 140 mvdd~-ellelVe 151 (394)
T COG0050 140 MVDDE-ELLELVE 151 (394)
T ss_pred ccCcH-HHHHHHH
Confidence 99876 5554444
No 168
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.41 E-value=0.0019 Score=65.49 Aligned_cols=113 Identities=12% Similarity=0.232 Sum_probs=66.6
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..+.++|||||-. |+ ......++. .. ++++++|+.--..|..+-. +......++|.|.|+||+|+.
T Consensus 295 ~kItfiDTPGhe~-F~-----~mr~rg~~~--aD-iaILVVDA~dGv~~QT~E~-----I~~~k~~~iPiIVViNKiDl~ 360 (742)
T CHL00189 295 QKIVFLDTPGHEA-FS-----SMRSRGANV--TD-IAILIIAADDGVKPQTIEA-----INYIQAANVPIIVAINKIDKA 360 (742)
T ss_pred eEEEEEECCcHHH-HH-----HHHHHHHHH--CC-EEEEEEECcCCCChhhHHH-----HHHHHhcCceEEEEEECCCcc
Confidence 3578999999743 21 112223322 23 5788888865444444322 223345789999999999986
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHHh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
... . +.+...+.. +. .+.++++ .+.++|+|+.+++++..|+..|-..
T Consensus 361 ~~~--~--------e~v~~eL~~-----~~-------ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 361 NAN--T--------ERIKQQLAK-----YN-------LIPEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred ccC--H--------HHHHHHHHH-----hc-------cchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 421 1 111111110 00 0112333 3789999999999999999988654
No 169
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.40 E-value=0.0017 Score=54.36 Aligned_cols=124 Identities=11% Similarity=0.091 Sum_probs=68.7
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m~~l~lP~InVlsK~DLl 146 (236)
+-|.|||||-+... + ..+--.+.. +++++.|. +++.+|-... .........-++|.+.|.||+||-
T Consensus 53 l~i~Dt~G~e~~~~----l----~~~~~~~a~-~~ilvydi---t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 120 (191)
T cd01875 53 LNLWDTAGQEEYDR----L----RTLSYPQTN-VFIICFSI---ASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR 120 (191)
T ss_pred EEEEECCCchhhhh----h----hhhhccCCC-EEEEEEEC---CCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhh
Confidence 56899999954211 1 111112333 46666774 4566664432 111111122479999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
......+...+.. +.... .+...++...++...|+..|+++++++++++..+-+.+-+
T Consensus 121 ~~~~~~~~~~~~~-------~~~v~-------~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 121 NDADTLKKLKEQG-------QAPIT-------PQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred cChhhHHHHhhcc-------CCCCC-------HHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 4331111111000 00000 0011133456677899999999999999999999886643
No 170
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.39 E-value=0.0025 Score=59.10 Aligned_cols=148 Identities=20% Similarity=0.303 Sum_probs=93.9
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcccC---------------CCCEEEEeCCCceeee-eccchHHHHHHHHhhCCCce
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELDNYL---------------DDDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNV 101 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~~~---------------~~~Yil~D~PGQiElf-~~~~~~~~iv~~L~~~~~~~ 101 (236)
||.|..+-+.-+..- +-+|.+|+ ...|++-|-||-||== .-.--+.++++.+++- +
T Consensus 168 PNaGKSTlls~vS~A-----kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt--~- 239 (369)
T COG0536 168 PNAGKSTLLSAVSAA-----KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT--R- 239 (369)
T ss_pred CCCcHHHHHHHHhhc-----CCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh--h-
Confidence 999988877666531 11344331 4569999999998833 2233478899998652 3
Q ss_pred EEEEeecCCCcc--chhhHHHHHHHHHHHH--hhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHH
Q 026584 102 CAVYLLDSQFIT--DVTKFISGCMASLSAM--VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAK 177 (236)
Q Consensus 102 ~~V~LiD~~~~~--dp~~~is~~l~sls~m--~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~ 177 (236)
+.+|++|.+... +|..=.-.+.--|... --.+-|.+.|+||+|+....++++.+
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~---------------------- 297 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEEL---------------------- 297 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHH----------------------
Confidence 589999998664 3544333333333322 11489999999999976443222211
Q ss_pred HHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584 178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 178 l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
.+ .+.+..+...+.|+|+.+.++++.|+..+-+.+.-.
T Consensus 298 -~~---~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 298 -KK---ALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred -HH---HHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 11 223344555566699999999999988877765443
No 171
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.39 E-value=0.00091 Score=54.44 Aligned_cols=109 Identities=17% Similarity=0.308 Sum_probs=60.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH-hhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM-VQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m-~~l~lP~InVlsK~D 144 (236)
.+-|+|||||-+... .+.+... .+.. ++++++|+. ++..|-. .++..+... ..-++|.+.|.||+|
T Consensus 52 ~~~i~Dt~G~~~~~~------~~~~~~~-~~~d-~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 120 (170)
T cd04115 52 KVQLWDTAGQERFRK------SMVQHYY-RNVH-AVVFVYDVT---NMASFHSLPSWIEECEQHSLPNEVPRILVGNKCD 120 (170)
T ss_pred EEEEEeCCChHHHHH------hhHHHhh-cCCC-EEEEEEECC---CHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 457899999865221 1233331 2344 578899975 4444322 222111111 123699999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccC---cccHHHHHHHHHH
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK---ESSIRYVLSQIDN 214 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d---~~~i~~L~~~Id~ 214 (236)
+.... ++.. . .-.+ +...++ ..|++.|+++ .++++.++..+=+
T Consensus 121 l~~~~-~~~~-------~-----------~~~~-------~~~~~~-~~~~e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 121 LREQI-QVPT-------D-----------LAQR-------FADAHS-MPLFETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred chhhc-CCCH-------H-----------HHHH-------HHHHcC-CcEEEEeccCCcCCCCHHHHHHHHHH
Confidence 86432 1100 0 0011 112232 6789999999 8888888876643
No 172
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.38 E-value=0.0033 Score=51.21 Aligned_cols=106 Identities=14% Similarity=0.257 Sum_probs=63.4
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..+.|||||-+ |... +.. .+ .+.. ++|+++|+. ++..+ +..++-.+..... +.|.+.|.||+|+.
T Consensus 51 l~i~Dt~G~~~-~~~~---~~~--~~--~~~d-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~ 117 (166)
T cd00877 51 FNVWDTAGQEK-FGGL---RDG--YY--IGGQ-CAIIMFDVT---SRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIK 117 (166)
T ss_pred EEEEECCCChh-hccc---cHH--Hh--cCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcc
Confidence 47899999954 3211 110 12 2333 578899965 44444 2333333333322 89999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+. . . .... +++ ...-..+++.|++++++++.++..+-+-+
T Consensus 118 ~~~--~----~---------------~~~~----~~~----~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 118 DRK--V----K---------------AKQI----TFH----RKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred ccc--C----C---------------HHHH----HHH----HHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 221 0 0 0000 111 12236899999999999999999887644
No 173
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.37 E-value=0.0039 Score=59.55 Aligned_cols=144 Identities=14% Similarity=0.206 Sum_probs=93.1
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCc---------eeeeeccchHHHHHHHHhhCC
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQ---------IELFTHVPVLRNFVDHLKSRN 98 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQ---------iElf~~~~~~~~iv~~L~~~~ 98 (236)
||-|...-++.|...=.-......+. +...+|.+|||-|- +|-|+-...++. +..
T Consensus 187 PNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a----I~~-- 260 (444)
T COG1160 187 PNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA----IER-- 260 (444)
T ss_pred CCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH----Hhh--
Confidence 99999998888874310111111111 11457999999994 677765544433 222
Q ss_pred CceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch-hHhhhhccccHHHHHHHhhhcchhHHH
Q 026584 99 FNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFA 176 (236)
Q Consensus 99 ~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~ 176 (236)
.-+++.++|++- ++....-+ ++...+.+.|+|-|+||+|++... ..++++..
T Consensus 261 -a~vvllviDa~~~~~~qD~~i------a~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~------------------- 314 (444)
T COG1160 261 -ADVVLLVIDATEGISEQDLRI------AGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKK------------------- 314 (444)
T ss_pred -cCEEEEEEECCCCchHHHHHH------HHHHHHcCCCeEEEEEccccCCchhhHHHHHHH-------------------
Confidence 236889999965 55555444 455678899999999999998752 12222111
Q ss_pred HHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 177 KLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 177 ~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+ +-..+.--+....+++|+.++.++..|+..|+++..
T Consensus 315 ~----i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 315 K----LRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred H----HHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 1 112222234578999999999999999999998753
No 174
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.37 E-value=0.0024 Score=52.54 Aligned_cols=107 Identities=15% Similarity=0.237 Sum_probs=60.9
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH--HHHHHHH-hhcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC--MASLSAM-VQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~--l~sls~m-~~l~lP~InVlsK~DL 145 (236)
.-|+|||||.+.. .+....-+ +.. +++++.|+. ++..|-... .-.+.-+ ..-++|.+.|.||+|+
T Consensus 52 l~i~Dt~G~~~~~-------~l~~~~~~-~~d-~~ilv~d~~---~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl 119 (172)
T cd04141 52 LDILDTAGQAEFT-------AMRDQYMR-CGE-GFIICYSVT---DRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDL 119 (172)
T ss_pred EEEEeCCCchhhH-------HHhHHHhh-cCC-EEEEEEECC---chhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhh
Confidence 5689999997521 11112212 233 577777854 444443321 1112211 2247999999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
.... .+ + .+ . .. ++..+++ ..|++.|+.++.++++++..+-+
T Consensus 120 ~~~~-~v----~--~~---------~-------~~---~~a~~~~-~~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 120 ESQR-QV----T--TE---------E-------GR---NLAREFN-CPFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred hhcC-cc----C--HH---------H-------HH---HHHHHhC-CEEEEEecCCCCCHHHHHHHHHH
Confidence 5432 11 0 00 0 01 1122344 58999999999999999988764
No 175
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.002 Score=64.08 Aligned_cols=138 Identities=18% Similarity=0.327 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHHH-hh--HHH----HHHHhcc--cCCCCEEEEeCCCceeeeeccch--HHHHH-HHHhhCCCceEEEE
Q 026584 38 PNGGLIYCMEHLED-NL--DDW----LAEELDN--YLDDDYLVFDCPGQIELFTHVPV--LRNFV-DHLKSRNFNVCAVY 105 (236)
Q Consensus 38 PNGalv~~me~l~~-n~--~~w----l~~~i~~--~~~~~Yil~D~PGQiElf~~~~~--~~~iv-~~L~~~~~~~~~V~ 105 (236)
||-|.-.-.+-|-. |- ..| .+++-.. +...++-++|.|| .|+..+. =.++. +.|.+.+.. ++|+
T Consensus 12 PNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG---~YSL~~~S~DE~Var~~ll~~~~D-~ivn 87 (653)
T COG0370 12 PNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPG---TYSLTAYSEDEKVARDFLLEGKPD-LIVN 87 (653)
T ss_pred CCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCC---cCCCCCCCchHHHHHHHHhcCCCC-EEEE
Confidence 89888888887762 22 123 1111111 2234689999999 7753332 12233 334344444 6899
Q ss_pred eecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHH
Q 026584 106 LLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIEL 185 (236)
Q Consensus 106 LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~l 185 (236)
++||... ..+-|+ +.-++.++.|.|.++|++|..++++ ++ -|. ++|. +.
T Consensus 88 VvDAtnL-eRnLyl------tlQLlE~g~p~ilaLNm~D~A~~~G-i~----ID~---------------~~L~----~~ 136 (653)
T COG0370 88 VVDATNL-ERNLYL------TLQLLELGIPMILALNMIDEAKKRG-IR----IDI---------------EKLS----KL 136 (653)
T ss_pred EcccchH-HHHHHH------HHHHHHcCCCeEEEeccHhhHHhcC-Cc----ccH---------------HHHH----HH
Confidence 9998855 344444 3456779999999999999987653 11 011 1111 11
Q ss_pred hhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 186 VDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 186 i~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
+ -+..+|.+++.+++++++..+|.+
T Consensus 137 L----GvPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 137 L----GVPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred h----CCCEEEEEeecCCCHHHHHHHHHH
Confidence 1 289999999999999999999976
No 176
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.35 E-value=0.0038 Score=50.92 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=63.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH-hhcCCCEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m-~~l~lP~InVlsK~DLl 146 (236)
.+.++|||||-++.. ....+++ +.+ +++|++|+........ +..++..+... ..-+.|.+.|.||+|+-
T Consensus 44 ~~~i~D~~G~~~~~~------~~~~~~~--~a~-~ii~V~D~s~~~s~~~-~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 44 EVCIFDLGGGANFRG------IWVNYYA--EAH-GLVFVVDSSDDDRVQE-VKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred EEEEEECCCcHHHHH------HHHHHHc--CCC-EEEEEEECCchhHHHH-HHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 467999999855211 1123332 334 6899999765322111 22222222111 11478999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCc------ccHHHHHHHHH
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKE------SSIRYVLSQID 213 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~------~~i~~L~~~Id 213 (236)
... ... .+.+.+. +-++.++.+. ..+++.|+.++ +++.+-+..+-
T Consensus 114 ~~~-~~~--------~i~~~~~-------------l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 114 NAL-LGA--------DVIEYLS-------------LEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred CCC-CHH--------HHHHhcC-------------cccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 432 111 1111110 0012334444 68999999998 78988887764
No 177
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.33 E-value=0.0039 Score=52.44 Aligned_cols=129 Identities=13% Similarity=0.217 Sum_probs=72.0
Q ss_pred CCEEEEeCCCceeeee-ccchHHHHHHHHh--hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 67 DDYLVFDCPGQIELFT-HVPVLRNFVDHLK--SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~-~~~~~~~iv~~L~--~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
....++||||--+... .......+.+.+. ..+.. ++++++|+..++.....+-..+..+- =-+.--+.|.|+||+
T Consensus 49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~-~illVi~~~~~t~~d~~~l~~l~~~f-g~~~~~~~ivv~T~~ 126 (196)
T cd01852 49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPH-AFLLVVPLGRFTEEEEQAVETLQELF-GEKVLDHTIVLFTRG 126 (196)
T ss_pred eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCE-EEEEEEECCCcCHHHHHHHHHHHHHh-ChHhHhcEEEEEECc
Confidence 4689999999443221 1122334444443 23444 68999998775544333322211110 001125788999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEe-----eccCcccHHHHHHHHHHhhcc
Q 026584 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPL-----DLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pl-----s~~d~~~i~~L~~~Id~~~~y 218 (236)
|-+... .+++|+..... .+.++++..+- +++.+ +..+...+..|+..|++....
T Consensus 127 d~l~~~-~~~~~~~~~~~-------------------~l~~l~~~c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 127 DDLEGG-TLEDYLENSCE-------------------ALKRLLEKCGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred cccCCC-cHHHHHHhccH-------------------HHHHHHHHhCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 988655 56655542211 22234444332 23333 356789999999999998764
No 178
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.33 E-value=0.0024 Score=51.41 Aligned_cols=109 Identities=16% Similarity=0.223 Sum_probs=61.9
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHh--hcCCCEEEEecccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV--QLELPHVNILSKMD 144 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~--~l~lP~InVlsK~D 144 (236)
+-++|||||-..+.. ... ..++ +.. ++++++|+..- ..|- ..++..+.... ..+.|.+.|.||+|
T Consensus 49 ~~i~D~~g~~~~~~~--~~~---~~~~--~~d-~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 117 (165)
T cd04146 49 LEILDTAGQQQADTE--QLE---RSIR--WAD-GFVLVYSITDR---SSFDEISQLKQLIREIKKRDREIPVILVGNKAD 117 (165)
T ss_pred EEEEECCCCcccccc--hHH---HHHH--hCC-EEEEEEECCCH---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 569999998852221 111 2232 233 57888997543 3332 22222222221 34899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCc-ccHHHHHHHHHHh
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE-SSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~-~~i~~L~~~Id~~ 215 (236)
+.... .+ . . .-.. .+..+++ ..|++.|+.++ +++++++..+-+.
T Consensus 118 l~~~~-~v----~--~----------------~~~~---~~~~~~~-~~~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 118 LLHYR-QV----S--T----------------EEGE---KLASELG-CLFFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred hHHhC-cc----C--H----------------HHHH---HHHHHcC-CEEEEeCCCCCchhHHHHHHHHHHH
Confidence 84322 10 0 0 0001 1123444 57999999999 5999999887553
No 179
>PLN03110 Rab GTPase; Provisional
Probab=97.31 E-value=0.0026 Score=54.47 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=63.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+-|.|||||.++. .+.....+ +. .++++++|+.. +..| +..++-.+.-....++|.+.|.||+||
T Consensus 62 ~l~l~Dt~G~~~~~-------~~~~~~~~-~~-~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl 129 (216)
T PLN03110 62 KAQIWDTAGQERYR-------AITSAYYR-GA-VGALLVYDITK---RQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL 129 (216)
T ss_pred EEEEEECCCcHHHH-------HHHHHHhC-CC-CEEEEEEECCC---hHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhc
Confidence 45778999986521 22222212 33 35788899753 3333 222322222222247999999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .... .... .++ ..++ ..|++.|+.++.+++.++..+-+.+
T Consensus 130 ~~~~-~~~~------------------~~~~----~l~---~~~~-~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 130 NHLR-SVAE------------------EDGQ----ALA---EKEG-LSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred cccc-CCCH------------------HHHH----HHH---HHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5322 1100 0011 111 2232 6899999999999999998885543
No 180
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.29 E-value=0.0044 Score=52.17 Aligned_cols=108 Identities=14% Similarity=0.231 Sum_probs=62.5
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
+.|+|||||-. |. .+....- .+.. ++++++|+. ++..|-. .++..+.. ..-..|.+.|.||+|+.
T Consensus 57 l~l~D~~G~~~-~~------~~~~~~~-~~a~-~iilv~D~~---~~~s~~~~~~~~~~i~~-~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 57 LQIWDTAGQER-FR------TITSTYY-RGTH-GVIVVYDVT---NGESFVNVKRWLQEIEQ-NCDDVCKVLVGNKNDDP 123 (199)
T ss_pred EEEEeCCCchh-HH------HHHHHHh-CCCc-EEEEEEECC---CHHHHHHHHHHHHHHHH-hCCCCCEEEEEECcccc
Confidence 56899999843 21 1112221 2333 578889964 4444432 22222211 12368999999999986
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.. ... .. ...+ +...++ ..++++|+.++.++++++..|.+.+
T Consensus 124 ~~~-~~~------~~------------~~~~-------~~~~~~-~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 124 ERK-VVE------TE------------DAYK-------FAGQMG-ISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred ccc-ccC------HH------------HHHH-------HHHHcC-CEEEEEECCCCcCHHHHHHHHHHHH
Confidence 432 110 00 0011 112233 6799999999999999999988754
No 181
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.28 E-value=0.0022 Score=56.04 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=72.5
Q ss_pred CCEEEEeCCCceeeeecc-chHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE---------
Q 026584 67 DDYLVFDCPGQIELFTHV-PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH--------- 136 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~-~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~--------- 136 (236)
.++-++|||||++..... ...+.++..++ +.. ++++++|+.........+...|-...+.+.-..|.
T Consensus 47 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~--~ad-~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~g 123 (233)
T cd01896 47 AKIQLLDLPGIIEGAADGKGRGRQVIAVAR--TAD-LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKG 123 (233)
T ss_pred eEEEEEECCCcccccccchhHHHHHHHhhc--cCC-EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecC
Confidence 346789999998865322 23344444442 344 57889998654333344444443333322222332
Q ss_pred -EEEecccccccc-hhHhhhhcc--------------ccHHHHHHHhhhcc--------hhHHHHHHHHHHHHhhccCCe
Q 026584 137 -VNILSKMDLVTN-KKEIEDYLN--------------PESQFLLSELNQHM--------APQFAKLNKSLIELVDEYSMV 192 (236)
Q Consensus 137 -InVlsK~DLl~~-~~~l~~~l~--------------~~~~~l~~~l~~~~--------~~~~~~l~~~l~~li~d~~lv 192 (236)
|.+.+|+++.+- .+....++. ...+.|.+.+.... .-|.......-.+.+.+ ..
T Consensus 124 gi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~--~~ 201 (233)
T cd01896 124 GINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLAR--QP 201 (233)
T ss_pred CEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhc--CC
Confidence 334456666532 112222221 12334444443210 00000001111111111 13
Q ss_pred eEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 193 SFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 193 ~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.++++|+.++.++++++..|-+.++.
T Consensus 202 ~~~~~SA~~g~gi~~l~~~i~~~L~~ 227 (233)
T cd01896 202 NSVVISAEKGLNLDELKERIWDKLGL 227 (233)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999887653
No 182
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.28 E-value=0.0029 Score=54.51 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=62.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHh-hcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMV-QLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~-~l~lP~InVlsK~D 144 (236)
...++|||||- ...+. ...+.+.. ++++++|+. ++..|-. .++..+.... ..+.|.|.|.||+|
T Consensus 51 ~l~i~Dt~G~~------~~~~~---~~~~~~ad-~iilV~d~t---d~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~D 117 (221)
T cd04148 51 TLVVIDHWEQE------MWTED---SCMQYQGD-AFVVVYSVT---DRSSFERASELRIQLRRNRQLEDRPIILVGNKSD 117 (221)
T ss_pred EEEEEeCCCcc------hHHHh---HHhhcCCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence 35689999986 11111 11111333 567777754 4444432 2222222111 14799999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+.+.. +.. . + . .. ++ ...++ ..|+++|+.++.+++.++..|-+.+.
T Consensus 118 l~~~~-~v~---~-------~-----~---~~----~~---a~~~~-~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 118 LARSR-EVS---V-------Q-----E---GR----AC---AVVFD-CKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred ccccc-eec---H-------H-----H---HH----HH---HHHcC-CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 96533 110 0 0 0 01 11 12333 47899999999999999998877553
No 183
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.27 E-value=0.0026 Score=52.76 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=61.2
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
-++|||||-+.. .+.... -.+.. ++++++|+.. +..|- ..++-.+ ....-+.|.+.|.||+|+.+
T Consensus 53 ~i~D~~G~~~~~-------~~~~~~-~~~~d-~iilv~d~~~---~~s~~~~~~~~~~i-~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 53 GIWDTAGSERYE-------AMSRIY-YRGAK-AAIVCYDLTD---SSSFERAKFWVKEL-QNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EEEECCCchhhh-------hhhHhh-cCCCC-EEEEEEECCC---HHHHHHHHHHHHHH-HhcCCCCCEEEEEEcccccc
Confidence 378999984421 111212 12344 6788898643 34332 2222111 11223799999999999865
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.. ...+-.. . ..+.++...++ ..++++|+++++++..++..|-+.+
T Consensus 120 ~~-~~~~~v~--~-------------------~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 120 QD-RSLRQVD--F-------------------HDVQDFADEIK-AQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred cc-cccCccC--H-------------------HHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 32 1100000 0 00011122333 5688999999999999999988744
No 184
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.24 E-value=0.0025 Score=61.26 Aligned_cols=138 Identities=9% Similarity=0.122 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccchHHHHHH----HHhhCCCceEE
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPVLRNFVD----HLKSRNFNVCA 103 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~~~~iv~----~L~~~~~~~~~ 103 (236)
||-|.-.-++-|..+-........+. .....+.++|||||-+-. ......+.+ .++ +.. ++
T Consensus 47 ~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~~--~aD-~i 121 (472)
T PRK03003 47 PNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAEVAMR--TAD-AV 121 (472)
T ss_pred CCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHHHHH--hCC-EE
Confidence 78888888887775320111111110 112357899999975311 111112211 222 334 68
Q ss_pred EEeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584 104 VYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL 182 (236)
Q Consensus 104 V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l 182 (236)
++++|+..-..+. ..+. ...-+.+.|.|.|.||+|+.+...+..
T Consensus 122 l~VvD~~~~~s~~~~~i~------~~l~~~~~piilV~NK~Dl~~~~~~~~----------------------------- 166 (472)
T PRK03003 122 LFVVDATVGATATDEAVA------RVLRRSGKPVILAANKVDDERGEADAA----------------------------- 166 (472)
T ss_pred EEEEECCCCCCHHHHHHH------HHHHHcCCCEEEEEECccCCccchhhH-----------------------------
Confidence 9999987533322 2222 222356899999999999853210000
Q ss_pred HHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+ ....++-..+|+|+..+.++.+|+..|-+.+.
T Consensus 167 -~-~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 167 -A-LWSLGLGEPHPVSALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred -H-HHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcc
Confidence 0 01123334579999999999999998877653
No 185
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.23 E-value=0.0051 Score=52.44 Aligned_cols=111 Identities=13% Similarity=0.177 Sum_probs=63.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHh---hcCCCEEEEecc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMV---QLELPHVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~---~l~lP~InVlsK 142 (236)
.+.|.|||||- .|. .+....- .+.. ++++++|+. ++..|-.. ++-.+.-.. .-..|.|.|.||
T Consensus 51 ~~~i~Dt~G~~-~~~------~l~~~~~-~~ad-~iilV~D~t---~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK 118 (215)
T cd04109 51 TLQVWDIGGQS-IGG------KMLDKYI-YGAH-AVFLVYDVT---NSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNK 118 (215)
T ss_pred EEEEEECCCcH-HHH------HHHHHHh-hcCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhccccCCCceEEEEEEC
Confidence 35789999983 232 2222221 2344 688999964 44444322 222221111 124678999999
Q ss_pred cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+||.... .. . . .... ++...++ ..++++|++++++++.++..+-+.+.
T Consensus 119 ~DL~~~~-~v----~--~------------~~~~-------~~~~~~~-~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 119 TDLEHNR-TV----K--D------------DKHA-------RFAQANG-MESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred ccccccc-cc----C--H------------HHHH-------HHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9996432 10 0 0 0011 2223445 46889999999999999999887543
No 186
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.23 E-value=0.0032 Score=53.78 Aligned_cols=109 Identities=16% Similarity=0.285 Sum_probs=61.5
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhh-cCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQ-LELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~-l~lP~InVlsK~DL 145 (236)
.-++|||||-. | ..+....- .+. -++|+++|.. ++..|-.. ++.-+..... -..|.+.|.||+|+
T Consensus 54 l~i~Dt~G~~~-~------~~~~~~~~-~~~-d~iilv~D~~---~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 54 LQLWDTAGQER-F------RSITRSYY-RNS-VGVLLVFDIT---NRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred EEEEeCCcchh-H------HHHHHHHh-cCC-cEEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 46889999843 1 11111111 223 3578888954 44443332 2221111111 25678889999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.... .. . .+ . .. ++...++ +.|+..|+++++++.+++..|-+.+
T Consensus 122 ~~~~-~v----~--~~------------~----~~---~~~~~~~-~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 122 ESQR-QV----T--RE------------E----AE---KLAKDLG-MKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred cccc-cc----C--HH------------H----HH---HHHHHhC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6432 11 0 00 0 01 1123444 7899999999999999999998743
No 187
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.22 E-value=0.0033 Score=64.21 Aligned_cols=111 Identities=16% Similarity=0.238 Sum_probs=64.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||-. |+ .++ .+..+ ... ++++++|+..-..|...-. +...-..++|.|.|+||+|+..
T Consensus 338 ~ItfiDTPGhe~-F~---~m~--~rga~--~aD-iaILVVdAddGv~~qT~e~-----i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 338 KITFLDTPGHEA-FT---AMR--ARGAQ--VTD-IVVLVVAADDGVMPQTIEA-----INHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred EEEEEECCCCcc-ch---hHH--Hhhhh--hCC-EEEEEEECCCCCCHhHHHH-----HHHHHhcCCcEEEEEECccccc
Confidence 467999999754 32 111 12221 223 4778888764333433322 2333457899999999999953
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHHHHHH
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~~Id~ 214 (236)
.. .. .....+.. +. -+.++++. +.|+|+|+.+++++..|+..|-.
T Consensus 404 a~--~e--------~V~~eL~~-----~~-------~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 404 AN--PD--------RVKQELSE-----YG-------LVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred cC--HH--------HHHHHHHH-----hc-------ccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 21 11 11111110 00 01233443 78999999999999999988864
No 188
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.21 E-value=0.004 Score=53.11 Aligned_cols=66 Identities=17% Similarity=0.299 Sum_probs=39.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||.++. ......+... . ++++++|+..-..... .-+ +......+.|.+.|+||+|++.
T Consensus 72 ~i~iiDtpG~~~f~------~~~~~~~~~a--D-~~llVvD~~~~~~~~~---~~~--~~~~~~~~~p~iiviNK~D~~~ 137 (213)
T cd04167 72 LFNIIDTPGHVNFM------DEVAAALRLS--D-GVVLVVDVVEGVTSNT---ERL--IRHAILEGLPIVLVINKIDRLI 137 (213)
T ss_pred EEEEEECCCCcchH------HHHHHHHHhC--C-EEEEEEECCCCCCHHH---HHH--HHHHHHcCCCEEEEEECcccCc
Confidence 46899999998742 1223334322 3 5888999864332211 111 1112235799999999999873
No 189
>PTZ00369 Ras-like protein; Provisional
Probab=97.20 E-value=0.0031 Score=52.48 Aligned_cols=110 Identities=12% Similarity=0.165 Sum_probs=60.9
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh-cCCCEEEEeccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-LELPHVNILSKMDLVT 147 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~-l~lP~InVlsK~DLl~ 147 (236)
+-|+|||||-+.... .....+ +. -++++++|+.....- ..+..+...+.-... -++|.|.|.||+|+.+
T Consensus 55 l~i~Dt~G~~~~~~l-------~~~~~~-~~-d~iilv~D~s~~~s~-~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 55 LDILDTAGQEEYSAM-------RDQYMR-TG-QGFLCVYSITSRSSF-EEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred EEEEeCCCCccchhh-------HHHHhh-cC-CEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 347999998763321 111212 33 357888886443221 123333322222211 2789999999999853
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.. .+.. . . .. +....++ ..++.+|+++++++++++..+=+.
T Consensus 125 ~~-~i~~------~---------~-------~~---~~~~~~~-~~~~e~Sak~~~gi~~~~~~l~~~ 165 (189)
T PTZ00369 125 ER-QVST------G---------E-------GQ---ELAKSFG-IPFLETSAKQRVNVDEAFYELVRE 165 (189)
T ss_pred cc-ccCH------H---------H-------HH---HHHHHhC-CEEEEeeCCCCCCHHHHHHHHHHH
Confidence 22 1100 0 0 00 1112233 478999999999999999888554
No 190
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.20 E-value=0.0086 Score=55.40 Aligned_cols=28 Identities=7% Similarity=-0.014 Sum_probs=25.4
Q ss_pred eeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584 192 VSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 192 v~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
..++++|+.+++++++|+..|++.+++-
T Consensus 235 ~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 235 PPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999987763
No 191
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.19 E-value=0.0053 Score=50.80 Aligned_cols=110 Identities=17% Similarity=0.277 Sum_probs=63.1
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
+-++|||||-+ | +.+....- .+.. ++++++|+.. +..| +..++-.+.....-..|.|.|.||+|+.
T Consensus 51 ~~i~Dt~g~~~-~------~~~~~~~~-~~~d-~iilv~d~~~---~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 51 LQIWDTNGQER-F------RSLNNSYY-RGAH-GYLLVYDVTD---QESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred EEEEECCCcHH-H------HhhHHHHc-cCCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 35789999643 1 11112221 2333 6888899753 3433 2333333333333468999999999987
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+.. .... + . -. .+ .+.++ +.++.+|++++.++..++..+-+.+.
T Consensus 119 ~~~-~v~~------~---------~---~~----~~---~~~~~-~~~~evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 119 NNK-VVDS------N---------I---AK----SF---CDSLN-IPFFETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred ccc-cCCH------H---------H---HH----HH---HHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 432 1100 0 0 00 11 11223 37999999999999999888776543
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.19 E-value=0.0031 Score=63.69 Aligned_cols=141 Identities=13% Similarity=0.143 Sum_probs=79.8
Q ss_pred CChHHHHHHHHHHHHhhHHHHHHHhc----------ccCCCCEEEEeCCCceeeeec-cchH-HHHHHHHhhCCCceEEE
Q 026584 37 GPNGGLIYCMEHLEDNLDDWLAEELD----------NYLDDDYLVFDCPGQIELFTH-VPVL-RNFVDHLKSRNFNVCAV 104 (236)
Q Consensus 37 GPNGalv~~me~l~~n~~~wl~~~i~----------~~~~~~Yil~D~PGQiElf~~-~~~~-~~iv~~L~~~~~~~~~V 104 (236)
.||.|.-.-++.|...-........+ .....++.++||||+.+-... ...+ ......++ +.. +++
T Consensus 283 ~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~--~aD-~iL 359 (712)
T PRK09518 283 RPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS--LAD-AVV 359 (712)
T ss_pred CCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH--hCC-EEE
Confidence 38999998888886431011111111 011235789999997632111 1111 11222232 344 689
Q ss_pred EeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHH
Q 026584 105 YLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI 183 (236)
Q Consensus 105 ~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~ 183 (236)
|++|+..-..+. .-+... +-+.+.|.|.|+||+|+.+...... .+
T Consensus 360 ~VvDa~~~~~~~d~~i~~~------Lr~~~~pvIlV~NK~D~~~~~~~~~--------------------~~-------- 405 (712)
T PRK09518 360 FVVDGQVGLTSTDERIVRM------LRRAGKPVVLAVNKIDDQASEYDAA--------------------EF-------- 405 (712)
T ss_pred EEEECCCCCCHHHHHHHHH------HHhcCCCEEEEEECcccccchhhHH--------------------HH--------
Confidence 999996422222 223222 2357999999999999853220000 00
Q ss_pred HHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 184 ELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 184 ~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
...++-..+|+|+.++.++.+|+..|-+.+.
T Consensus 406 ---~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 406 ---WKLGLGEPYPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred ---HHcCCCCeEEEECCCCCCchHHHHHHHHhcc
Confidence 0112334579999999999999998887664
No 193
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.16 E-value=0.0061 Score=60.47 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=66.3
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
..+-|+||||+..+ .......++.. . ++++++|+..-..+ ..++ +......++|.|.|+||+|+
T Consensus 64 ~kinlIDTPGh~DF------~~ev~~~l~~a--D-~alLVVDa~~G~~~qT~~~------l~~a~~~~ip~IVviNKiD~ 128 (594)
T TIGR01394 64 TKINIVDTPGHADF------GGEVERVLGMV--D-GVLLLVDASEGPMPQTRFV------LKKALELGLKPIVVINKIDR 128 (594)
T ss_pred EEEEEEECCCHHHH------HHHHHHHHHhC--C-EEEEEEeCCCCCcHHHHHH------HHHHHHCCCCEEEEEECCCC
Confidence 35789999997552 22333444333 3 57889998642112 2222 33445679999999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc----------cHHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES----------SIRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~----------~i~~L~~~Id~~ 215 (236)
.... ..... +++.. .+.++. .-++.-.+.+++.|+.++. ++..|+..|-+.
T Consensus 129 ~~a~--~~~v~--------~ei~~----l~~~~g-----~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~ 189 (594)
T TIGR01394 129 PSAR--PDEVV--------DEVFD----LFAELG-----ADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRH 189 (594)
T ss_pred CCcC--HHHHH--------HHHHH----HHHhhc-----cccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHh
Confidence 5422 11111 11110 011100 0011112578999999985 788898888776
Q ss_pred hcc
Q 026584 216 IQW 218 (236)
Q Consensus 216 ~~y 218 (236)
++-
T Consensus 190 lP~ 192 (594)
T TIGR01394 190 VPA 192 (594)
T ss_pred CCC
Confidence 653
No 194
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.16 E-value=0.007 Score=53.40 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=62.4
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHH---------hhcCCCEEE
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAM---------VQLELPHVN 138 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m---------~~l~lP~In 138 (236)
-|+|||||-. |. .++. +.-.+.. ++++++|.. ++..|-. .++--+... ..-+.|.|.
T Consensus 51 ~I~Dt~G~~~-~~---~~~~----~~~~~ad-~iIlVfdv~---~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIi 118 (247)
T cd04143 51 DILDTSGNHP-FP---AMRR----LSILTGD-VFILVFSLD---NRESFEEVCRLREQILETKSCLKNKTKENVKIPMVI 118 (247)
T ss_pred EEEECCCChh-hh---HHHH----HHhccCC-EEEEEEeCC---CHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEE
Confidence 4899999854 21 1222 2112333 567777765 4444422 222111111 123789999
Q ss_pred EecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 139 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 139 VlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
|.||+|+.... +. ..+. +.+++....-..++++|+++++++++++..|-+....
T Consensus 119 vgNK~Dl~~~~-~v------~~~e-------------------i~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~ 172 (247)
T cd04143 119 CGNKADRDFPR-EV------QRDE-------------------VEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKL 172 (247)
T ss_pred EEECccchhcc-cc------CHHH-------------------HHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 99999996422 11 0000 1111112223679999999999999999999776544
No 195
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.16 E-value=0.0023 Score=56.36 Aligned_cols=129 Identities=16% Similarity=0.341 Sum_probs=73.9
Q ss_pred CEEEEeCCCceeeeecc--chHHHHHHHHhhCCCceEEEEeecCCC--ccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 68 DYLVFDCPGQIELFTHV--PVLRNFVDHLKSRNFNVCAVYLLDSQF--ITDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~--~~~~~iv~~L~~~~~~~~~V~LiD~~~--~~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
..=|.|||||..++... .....+ + .+.. +.||++|++. ..+.-.++..++.++ ...+-++..-..+-|+
T Consensus 49 ~l~iwD~pGq~~~~~~~~~~~~~~i---f--~~v~-~LIyV~D~qs~~~~~~l~~~~~~i~~l-~~~sp~~~v~vfiHK~ 121 (232)
T PF04670_consen 49 PLNIWDCPGQDDFMENYFNSQREEI---F--SNVG-VLIYVFDAQSDDYDEDLAYLSDCIEAL-RQYSPNIKVFVFIHKM 121 (232)
T ss_dssp EEEEEEE-SSCSTTHTTHTCCHHHH---H--CTES-EEEEEEETT-STCHHHHHHHHHHHHHH-HHHSTT-EEEEEEE-C
T ss_pred EEEEEEcCCccccccccccccHHHH---H--hccC-EEEEEEEcccccHHHHHHHHHHHHHHH-HHhCCCCeEEEEEeec
Confidence 46799999999876532 222222 3 2333 6899999983 223333333333222 2344466666668999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHHHhhccccc
Q 026584 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQWGED 221 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed 221 (236)
|+++.... ...++...+.+.+.+.+.+ -+.|..-|+-|..-.+..=+.+++.++..+.
T Consensus 122 D~l~~~~r--------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~Sly~A~S~Ivq~LiP~~~~ 181 (232)
T PF04670_consen 122 DLLSEDER--------------------EEIFRDIQQRIRDELEDLGIEDITFFLTSIWDESLYEAWSKIVQKLIPNLST 181 (232)
T ss_dssp CCS-HHHH--------------------HHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTSTHHHHHHHHHHHTTSTTHCC
T ss_pred ccCCHHHH--------------------HHHHHHHHHHHHHHhhhccccceEEEeccCcCcHHHHHHHHHHHHHcccHHH
Confidence 99865411 1234445555566666766 4899999999976556666666777766555
Q ss_pred CC
Q 026584 222 AD 223 (236)
Q Consensus 222 ~~ 223 (236)
.|
T Consensus 182 le 183 (232)
T PF04670_consen 182 LE 183 (232)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 196
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.15 E-value=0.0043 Score=51.52 Aligned_cols=123 Identities=11% Similarity=0.108 Sum_probs=63.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
++.++|||||.+....+.. .++ +.+ +++++.|......-...-..++..+. ...-..|.|.|.||+|+..
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~------~~~--~a~-~~llv~~i~~~~s~~~~~~~~~~~i~-~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 50 QLALWDTAGQEEYERLRPL------SYS--KAH-VILIGFAVDTPDSLENVRTKWIEEVR-RYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred EEEEEECCCChhccccchh------hcC--CCC-EEEEEEECCCHHHHHHHHHHHHHHHH-HhCCCCCEEEEeeChhhhh
Confidence 3678899999764432211 121 223 34444454222111111112322222 2223799999999999854
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.....+...... .. . .. ....+...++...|+..|+++++++++++..+-+..
T Consensus 120 ~~~~~~~~~~~~-------~~--~----~~---~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 120 DAVAKEEYRTQR-------FV--P----IQ---QGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred CcccccccccCC-------cC--C----HH---HHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 321111100000 00 0 00 001223456667899999999999999999998643
No 197
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0015 Score=63.97 Aligned_cols=105 Identities=20% Similarity=0.361 Sum_probs=66.5
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-----ch---hhHHHHHHHHHHHHhhcCCCEEE
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-----DV---TKFISGCMASLSAMVQLELPHVN 138 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-----dp---~~~is~~l~sls~m~~l~lP~In 138 (236)
..+.|+|+|| |++..++.+......+ ++|.++||..-. +| ..-.+. +.-.|++.++-
T Consensus 255 ~~~tliDaPG------hkdFi~nmi~g~sqaD---~avLvvd~s~~~FE~gfd~~gQtrEha~------llr~Lgi~qli 319 (603)
T KOG0458|consen 255 KIVTLIDAPG------HKDFIPNMISGASQAD---VAVLVVDASTGEFESGFDPGGQTREHAL------LLRSLGISQLI 319 (603)
T ss_pred eeEEEecCCC------ccccchhhhccccccc---eEEEEEECCcchhhhccCCCCchHHHHH------HHHHcCcceEE
Confidence 3589999999 7777778777664444 688899996521 12 122222 22236788877
Q ss_pred E-ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHh-hccCC----eeEEEeeccCcccHHHH
Q 026584 139 I-LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV-DEYSM----VSFMPLDLRKESSIRYV 208 (236)
Q Consensus 139 V-lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li-~d~~l----v~f~pls~~d~~~i~~L 208 (236)
| +||+|+++=.+ .+|..+...+-.++ +..++ ++|+|+|...++++...
T Consensus 320 vaiNKmD~V~Wsq----------------------~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 320 VAINKMDLVSWSQ----------------------DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred EEeecccccCccH----------------------HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 7 89999986221 12222333333444 45554 79999999999988654
No 198
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.07 E-value=0.004 Score=51.95 Aligned_cols=120 Identities=14% Similarity=0.209 Sum_probs=68.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D 144 (236)
+.-|.||+||-+....++. .+ + +.. +++++.|.. ++.+|-.. ++-.+. ...-+.|.|.|-||+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~------~~-~-~a~-~~ilvyd~~---~~~Sf~~~~~~w~~~i~-~~~~~~piilvgnK~D 116 (176)
T cd04133 50 NLGLWDTAGQEDYNRLRPL------SY-R-GAD-VFVLAFSLI---SRASYENVLKKWVPELR-HYAPNVPIVLVGTKLD 116 (176)
T ss_pred EEEEEECCCCccccccchh------hc-C-CCc-EEEEEEEcC---CHHHHHHHHHHHHHHHH-HhCCCCCEEEEEeChh
Confidence 3568899999664332211 12 2 333 577777854 45555432 332222 2234899999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
|.+...... .+... ..+. .+...++...++...|+..|++++++|+.++..+-+..
T Consensus 117 l~~~~~~~~--~~~~~----~~v~----------~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 117 LRDDKQYLA--DHPGA----SPIT----------TAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred hccChhhhh--hccCC----CCCC----------HHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 965431110 00000 0000 01111233455655799999999999999999988753
No 199
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.05 E-value=0.012 Score=52.50 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=40.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.++.++|||||.++ . ......++. .. ++++++|+..-..... ..+ +...-..++|.+.++||+|+.
T Consensus 71 ~~i~liDTPG~~df-~-----~~~~~~l~~--aD-~~IlVvda~~g~~~~~---~~i--~~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 71 CVINLLDTPGHEDF-S-----EDTYRTLTA--VD-SAVMVIDAAKGVEPQT---RKL--FEVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred EEEEEEECCCchHH-H-----HHHHHHHHH--CC-EEEEEEECCCCccHHH---HHH--HHHHHhcCCCEEEEEECCccC
Confidence 46799999998652 1 223344432 33 5788999864211111 111 222334689999999999986
Q ss_pred cc
Q 026584 147 TN 148 (236)
Q Consensus 147 ~~ 148 (236)
..
T Consensus 137 ~a 138 (267)
T cd04169 137 GR 138 (267)
T ss_pred CC
Confidence 53
No 200
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.05 E-value=0.019 Score=57.77 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=42.4
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.++.++||||+.++. ......++.. . ++++++|+..--.+..- .+ +....+.++|++.|+||+|+.
T Consensus 75 ~~i~liDTPG~~~~~------~~~~~~l~~~--D-~~ilVvda~~g~~~~~~---~~--~~~~~~~~~p~ivviNK~D~~ 140 (689)
T TIGR00484 75 HRINIIDTPGHVDFT------VEVERSLRVL--D-GAVAVLDAVGGVQPQSE---TV--WRQANRYEVPRIAFVNKMDKT 140 (689)
T ss_pred eEEEEEECCCCcchh------HHHHHHHHHh--C-EEEEEEeCCCCCChhHH---HH--HHHHHHcCCCEEEEEECCCCC
Confidence 468999999987622 1233444333 3 58999998653222211 11 122345789999999999998
Q ss_pred c
Q 026584 147 T 147 (236)
Q Consensus 147 ~ 147 (236)
+
T Consensus 141 ~ 141 (689)
T TIGR00484 141 G 141 (689)
T ss_pred C
Confidence 5
No 201
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.05 E-value=0.0028 Score=51.40 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=51.3
Q ss_pred EEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584 102 CAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180 (236)
Q Consensus 102 ~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~ 180 (236)
++++++|+..- ......+-..+-. ...+.|.|.|+||+||+++. ++..++.
T Consensus 11 ~il~VvD~~~p~~~~~~~i~~~l~~----~~~~~p~ilVlNKiDl~~~~-~~~~~~~----------------------- 62 (157)
T cd01858 11 VVIQVLDARDPMGTRCKHVEEYLKK----EKPHKHLIFVLNKCDLVPTW-VTARWVK----------------------- 62 (157)
T ss_pred EEEEEEECCCCccccCHHHHHHHHh----ccCCCCEEEEEEchhcCCHH-HHHHHHH-----------------------
Confidence 58999998652 3334444433321 23458999999999997543 2221111
Q ss_pred HHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+-+.+. ...+|+|++.+.+++.|+..+-...
T Consensus 63 ---~~~~~~~-~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 63 ---ILSKEYP-TIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ---HHhcCCc-EEEEEeeccccccHHHHHHHHHHHH
Confidence 0111121 2258999999999999988886643
No 202
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.04 E-value=0.0094 Score=50.95 Aligned_cols=110 Identities=14% Similarity=0.224 Sum_probs=61.5
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.-|.|||||-. |. .++. ..+ .+.. ++++++|+. ++.+|= ..++-.+.....-+.|.|.|.||+||.
T Consensus 51 l~iwDtaGqe~-~~---~l~~--~y~--~~ad-~iIlVfDvt---d~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 51 LQIWDTAGQER-FN---SITS--AYY--RSAK-GIILVYDIT---KKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEEeCCCchh-hH---HHHH--HHh--cCCC-EEEEEEECc---CHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 46889999843 21 1111 122 2333 578888965 444442 233322222222369999999999995
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
... ++.. ....+++ ....-..|+..||+++++|.+++..+-+.+
T Consensus 119 ~~~-~v~~----------------------~~~~~~a---~~~~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 119 TDR-EISR----------------------QQGEKFA---QQITGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred ccc-ccCH----------------------HHHHHHH---HhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 422 1110 0001111 122125799999999999999997776543
No 203
>PRK10218 GTP-binding protein; Provisional
Probab=97.04 E-value=0.0085 Score=59.62 Aligned_cols=116 Identities=12% Similarity=0.191 Sum_probs=64.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.+.++|||||..+. ......++. .. ++++++|+..- ..-..++ +......++|+|.|+||+|+.
T Consensus 69 ~inliDTPG~~df~------~~v~~~l~~--aD-g~ILVVDa~~G~~~qt~~~------l~~a~~~gip~IVviNKiD~~ 133 (607)
T PRK10218 69 RINIVDTPGHADFG------GEVERVMSM--VD-SVLLVVDAFDGPMPQTRFV------TKKAFAYGLKPIVVINKVDRP 133 (607)
T ss_pred EEEEEECCCcchhH------HHHHHHHHh--CC-EEEEEEecccCccHHHHHH------HHHHHHcCCCEEEEEECcCCC
Confidence 57899999987632 122233432 33 57889998642 2222333 223345799999999999985
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc----------cHHHHHHHHHHhh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES----------SIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~----------~i~~L~~~Id~~~ 216 (236)
... .. ...+++.+ .+..+ ...++-.-+.++|.|+.++. ++..|+..|-+.+
T Consensus 134 ~a~--~~--------~vl~ei~~----l~~~l-----~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 134 GAR--PD--------WVVDQVFD----LFVNL-----DATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCc--hh--------HHHHHHHH----HHhcc-----CccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 422 11 11111111 11110 11111112678999999997 5788887766655
Q ss_pred c
Q 026584 217 Q 217 (236)
Q Consensus 217 ~ 217 (236)
.
T Consensus 195 P 195 (607)
T PRK10218 195 P 195 (607)
T ss_pred C
Confidence 4
No 204
>PRK12739 elongation factor G; Reviewed
Probab=97.03 E-value=0.014 Score=58.83 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=43.9
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.++.++||||+.+ .+....+.+...+ ++++++|+..--.+.+- . + +....+.++|+|.++||+|+.
T Consensus 73 ~~i~liDTPG~~~------f~~e~~~al~~~D---~~ilVvDa~~g~~~qt~-~--i--~~~~~~~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 73 HRINIIDTPGHVD------FTIEVERSLRVLD---GAVAVFDAVSGVEPQSE-T--V--WRQADKYGVPRIVFVNKMDRI 138 (691)
T ss_pred EEEEEEcCCCHHH------HHHHHHHHHHHhC---eEEEEEeCCCCCCHHHH-H--H--HHHHHHcCCCEEEEEECCCCC
Confidence 4689999999765 2234455554333 68999998654333221 1 1 222345789999999999998
Q ss_pred cc
Q 026584 147 TN 148 (236)
Q Consensus 147 ~~ 148 (236)
..
T Consensus 139 ~~ 140 (691)
T PRK12739 139 GA 140 (691)
T ss_pred CC
Confidence 53
No 205
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.03 E-value=0.0032 Score=60.75 Aligned_cols=110 Identities=19% Similarity=0.308 Sum_probs=71.9
Q ss_pred CCEE--EEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 67 DDYL--VFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 67 ~~Yi--l~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
..|+ +|||||.+- |++ ...+.|..-. -++.++||..=-.... ++++-+|+. .++-.|+|+||+|
T Consensus 74 ~~Y~lnlIDTPGHVD-FsY-----EVSRSLAACE---GalLvVDAsQGveAQT-lAN~YlAle----~~LeIiPViNKID 139 (603)
T COG0481 74 ETYVLNLIDTPGHVD-FSY-----EVSRSLAACE---GALLVVDASQGVEAQT-LANVYLALE----NNLEIIPVLNKID 139 (603)
T ss_pred CEEEEEEcCCCCccc-eEE-----EehhhHhhCC---CcEEEEECccchHHHH-HHHHHHHHH----cCcEEEEeeeccc
Confidence 3464 799999888 442 2233353211 2678899975444333 566655555 7999999999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
|=..+ ++....+ +-+-.|+ ...+-+|++++.+|++++.+|=+.++.
T Consensus 140 LP~Ad----------pervk~e------------------Ie~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 140 LPAAD----------PERVKQE------------------IEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred CCCCC----------HHHHHHH------------------HHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 94322 2221111 1122333 578889999999999999999887766
No 206
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.00 E-value=0.0017 Score=52.48 Aligned_cols=103 Identities=15% Similarity=0.229 Sum_probs=66.6
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 149 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~ 149 (236)
-.||||| |.|.|+..-..++..++. ..+. +++ +...+|.+-++..+++. +--|+|-|+||+||.++.
T Consensus 40 ~~IDTPG--Ey~~~~~~Y~aL~tt~~d--advi-~~v---~~and~~s~f~p~f~~~-----~~k~vIgvVTK~DLaed~ 106 (148)
T COG4917 40 GDIDTPG--EYFEHPRWYHALITTLQD--ADVI-IYV---HAANDPESRFPPGFLDI-----GVKKVIGVVTKADLAEDA 106 (148)
T ss_pred cccCCch--hhhhhhHHHHHHHHHhhc--ccee-eee---ecccCccccCCcccccc-----cccceEEEEecccccchH
Confidence 4789999 778887776667666643 3332 222 44566655555544322 356799999999998644
Q ss_pred hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 150 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 150 ~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
++.. ..+.+-+-|--..+-+|+.|+.|++.|...+.
T Consensus 107 -dI~~---------------------------~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 107 -DISL---------------------------VKRWLREAGAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred -hHHH---------------------------HHHHHHHcCCcceEEEeccCcccHHHHHHHHH
Confidence 2210 00223345556788899999999999987664
No 207
>PRK00007 elongation factor G; Reviewed
Probab=97.00 E-value=0.015 Score=58.71 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=44.5
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..+.++||||+.+ .+......+...+ ++|+++|+..--.+.+.- -+....+.++|+|.++||+|+.
T Consensus 75 ~~~~liDTPG~~~------f~~ev~~al~~~D---~~vlVvda~~g~~~qt~~-----~~~~~~~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 75 HRINIIDTPGHVD------FTIEVERSLRVLD---GAVAVFDAVGGVEPQSET-----VWRQADKYKVPRIAFVNKMDRT 140 (693)
T ss_pred eEEEEEeCCCcHH------HHHHHHHHHHHcC---EEEEEEECCCCcchhhHH-----HHHHHHHcCCCEEEEEECCCCC
Confidence 4689999999644 3334555554333 689999986543333211 1223446799999999999998
Q ss_pred cc
Q 026584 147 TN 148 (236)
Q Consensus 147 ~~ 148 (236)
+.
T Consensus 141 ~~ 142 (693)
T PRK00007 141 GA 142 (693)
T ss_pred CC
Confidence 53
No 208
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=96.95 E-value=0.015 Score=47.72 Aligned_cols=111 Identities=12% Similarity=0.147 Sum_probs=60.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHH-HHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLS-AMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls-~m~~l~lP~InVlsK~D 144 (236)
+.-|.|||||-+... ++ -..+ .+.. ++++++|+. ++..+ +..++-.+. ....-..|.+.|.||+|
T Consensus 50 ~l~i~Dt~G~~~~~~----~~--~~~~--~~ad-~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~D 117 (170)
T cd04108 50 SLQLWDTAGQERFKC----IA--STYY--RGAQ-AIIIVFDLT---DVASLEHTRQWLEDALKENDPSSVLLFLVGTKKD 117 (170)
T ss_pred EEEEEeCCChHHHHh----hH--HHHh--cCCC-EEEEEEECc---CHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChh
Confidence 367899999955221 11 1112 2333 578888874 34444 223322221 11122467899999999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+.+.. +... .+ .... .+...++ ..++.+|++++++++.++..+-+.
T Consensus 118 l~~~~-~~~~-~~---------------~~~~-------~~~~~~~-~~~~e~Sa~~g~~v~~lf~~l~~~ 163 (170)
T cd04108 118 LSSPA-QYAL-ME---------------QDAI-------KLAAEMQ-AEYWSVSALSGENVREFFFRVAAL 163 (170)
T ss_pred cCccc-cccc-cH---------------HHHH-------HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 86432 1100 00 0000 1112233 478899999999999999887654
No 209
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.93 E-value=0.013 Score=51.04 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=39.5
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
...++|||||.++- ......++.. . ++++++|+..-..+..- -+ +....+.++|.|.|+||+|+.
T Consensus 74 ~i~iiDTPG~~~f~------~~~~~~l~~a--D-~~ilVvD~~~g~~~~t~---~~--l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 74 LINLIDSPGHVDFS------SEVTAALRLC--D-GALVVVDAVEGVCVQTE---TV--LRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EEEEECCCCccccH------HHHHHHHHhc--C-eeEEEEECCCCCCHHHH---HH--HHHHHHcCCCEEEEEECCCcc
Confidence 35689999998722 2334445332 3 57888998653333221 11 222234579999999999986
No 210
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=96.92 E-value=0.018 Score=48.59 Aligned_cols=107 Identities=10% Similarity=0.215 Sum_probs=62.0
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
-+.|||||-. | +.+....- .+.. ++++++|... +..|-. .++--+.... -+.|.|.|-||+||..
T Consensus 58 ~iwDt~G~~~-~------~~l~~~~~-~~ad-~illVfD~t~---~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~ 124 (189)
T cd04121 58 QLWDTSGQGR-F------CTIFRSYS-RGAQ-GIILVYDITN---RWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAF 124 (189)
T ss_pred EEEeCCCcHH-H------HHHHHHHh-cCCC-EEEEEEECcC---HHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchh
Confidence 5789999843 2 12222221 2333 6788888654 333322 2222222212 3899999999999953
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.. .+ . . + . .++ +...++ ..|+..|++++.++++++..+-+.+
T Consensus 125 ~~-~v----~--~----~-----~-------~~~---~a~~~~-~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 125 KR-QV----A--T----E-----Q-------AQA---YAERNG-MTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred cc-CC----C--H----H-----H-------HHH---HHHHcC-CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 22 11 0 0 0 0 011 122344 5799999999999999999998754
No 211
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.90 E-value=0.015 Score=52.66 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=42.5
Q ss_pred cCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc-CC-eeEEEeeccCcccHHHHH
Q 026584 132 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SM-VSFMPLDLRKESSIRYVL 209 (236)
Q Consensus 132 l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~-~l-v~f~pls~~d~~~i~~L~ 209 (236)
.+.|.+.|+||+|+.... .... .. ..+...+..+.... +. ..++++|+.++++++.|+
T Consensus 171 ~~~~~ivv~NK~Dl~~~~-~~~~-~~------------------~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~ 230 (300)
T TIGR00750 171 MEIADIYVVNKADGEGAT-NVTI-AR------------------LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELW 230 (300)
T ss_pred hhhccEEEEEcccccchh-HHHH-HH------------------HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHH
Confidence 489999999999997543 1100 00 00001111122221 22 368999999999999999
Q ss_pred HHHHHhhccc
Q 026584 210 SQIDNCIQWG 219 (236)
Q Consensus 210 ~~Id~~~~y~ 219 (236)
..|.+..++.
T Consensus 231 ~~i~~~~~~~ 240 (300)
T TIGR00750 231 DAIEEHKTFL 240 (300)
T ss_pred HHHHHHHHHH
Confidence 9999876644
No 212
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.89 E-value=0.0016 Score=55.30 Aligned_cols=104 Identities=21% Similarity=0.281 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHHHhhHHHHHH--Hhc--------ccCCCCEEEEeCCCceeeeeccchHHHHHHHHh-hCCCceEEE
Q 026584 36 LGPNGGLIYCMEHLEDNLDDWLAE--ELD--------NYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAV 104 (236)
Q Consensus 36 LGPNGalv~~me~l~~n~~~wl~~--~i~--------~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~-~~~~~~~~V 104 (236)
+||+||=.+++=+.+.+- .+..- -++ .-....+-++|+||.--+- .++++.+. ..+.+ ++|
T Consensus 9 ~Gps~SGKTaLf~~L~~~-~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr------~~~~~~~~~~~~~k-~II 80 (181)
T PF09439_consen 9 VGPSGSGKTALFSQLVNG-KTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR------SKLLDELKYLSNAK-GII 80 (181)
T ss_dssp E-STTSSHHHHHHHHHHS-S---B---SSEEEECCGSSTCGTCECEEEETT-HCCC------HHHHHHHHHHGGEE-EEE
T ss_pred EcCCCCCHHHHHHHHhcC-CcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHH------HHHHHhhhchhhCC-EEE
Confidence 699998888886555443 32110 000 0013468899999954432 34555532 22344 799
Q ss_pred EeecCCCc----cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 105 YLLDSQFI----TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 105 ~LiD~~~~----~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
|++||... .+.+.|+-.+|...... +-+.|.+.+.||.|+...
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT-
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCcccccc
Confidence 99999753 34555555555444433 468999999999999864
No 213
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.89 E-value=0.0088 Score=57.29 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeeeeccch--HHHHHHHHhhCCCceEEEE
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELFTHVPV--LRNFVDHLKSRNFNVCAVY 105 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf~~~~~--~~~iv~~L~~~~~~~~~V~ 105 (236)
||.|.-.-++.|...-..+..+.... +....+.++|||||-+....... +.+-...++ +.. ++++
T Consensus 212 ~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~--~aD-~il~ 288 (442)
T TIGR00450 212 PNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK--QAD-LVIY 288 (442)
T ss_pred CCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh--hCC-EEEE
Confidence 78888888888875310111111110 11224689999998764321111 112223332 344 5899
Q ss_pred eecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 106 LLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 106 LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
++|+..-.+.... ++ ....+.+.|.|.|+||+|+.+.
T Consensus 289 V~D~s~~~s~~~~---~l---~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 289 VLDASQPLTKDDF---LI---IDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred EEECCCCCChhHH---HH---HHHhhCCCCEEEEEECccCCCc
Confidence 9998654333332 21 1122358999999999999643
No 214
>PRK12740 elongation factor G; Reviewed
Probab=96.88 E-value=0.027 Score=56.38 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=41.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.++.++||||+.++ .......+... . ++++++|+..-...... -+ +......++|.+.|+||+|+.
T Consensus 60 ~~i~liDtPG~~~~------~~~~~~~l~~a--D-~vllvvd~~~~~~~~~~---~~--~~~~~~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 60 HKINLIDTPGHVDF------TGEVERALRVL--D-GAVVVVCAVGGVEPQTE---TV--WRQAEKYGVPRIIFVNKMDRA 125 (668)
T ss_pred EEEEEEECCCcHHH------HHHHHHHHHHh--C-eEEEEEeCCCCcCHHHH---HH--HHHHHHcCCCEEEEEECCCCC
Confidence 36899999998652 12233344332 3 57889998653222211 11 223345689999999999997
Q ss_pred cc
Q 026584 147 TN 148 (236)
Q Consensus 147 ~~ 148 (236)
..
T Consensus 126 ~~ 127 (668)
T PRK12740 126 GA 127 (668)
T ss_pred CC
Confidence 53
No 215
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.0068 Score=59.27 Aligned_cols=109 Identities=14% Similarity=0.220 Sum_probs=68.1
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 149 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~ 149 (236)
=+|||||.+-+ .-...+-|..-+ -++.++||..=--+.. ++++-+|+. .++-.|+|+||+|+-+..
T Consensus 128 NLIDTPGHvDF------s~EVsRslaac~---G~lLvVDA~qGvqAQT-~anf~lAfe----~~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 128 NLIDTPGHVDF------SGEVSRSLAACD---GALLVVDASQGVQAQT-VANFYLAFE----AGLAIIPVLNKIDLPSAD 193 (650)
T ss_pred EeecCCCcccc------cceehehhhhcC---ceEEEEEcCcCchHHH-HHHHHHHHH----cCCeEEEeeeccCCCCCC
Confidence 37999996652 223333343211 3678899965433333 445545554 799999999999995432
Q ss_pred hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 150 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 150 ~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
++....++. + +.+...-..+-+|++.+-+++.++.+|=+.++-
T Consensus 194 ----------pe~V~~q~~---------------~-lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 194 ----------PERVENQLF---------------E-LFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred ----------HHHHHHHHH---------------H-HhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 222212111 1 123333588999999999999999988776654
No 216
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.84 E-value=0.004 Score=50.48 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=49.7
Q ss_pred EEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHH
Q 026584 102 CAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNK 180 (236)
Q Consensus 102 ~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~ 180 (236)
++++++|+..- ......+ .. ......+.|.|.|+||+||++.. ++..|+.
T Consensus 2 vvl~VvD~~~p~~~~~~~i----~~-~~~~~~~~p~IiVlNK~Dl~~~~-~~~~~~~----------------------- 52 (155)
T cd01849 2 VILEVLDARDPLGTRSPDI----ER-VLIKEKGKKLILVLNKADLVPKE-VLRKWLA----------------------- 52 (155)
T ss_pred EEEEEEeccCCccccCHHH----HH-HHHhcCCCCEEEEEechhcCCHH-HHHHHHH-----------------------
Confidence 47899998542 2222222 11 22233589999999999997543 2222111
Q ss_pred HHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 181 SLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 181 ~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
. .........+++|+.++.+++.|...|-+.
T Consensus 53 ---~-~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 53 ---Y-LRHSYPTIPFKISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred ---H-HHhhCCceEEEEeccCCcChhhHHHHHHHH
Confidence 0 011113568999999999999999988553
No 217
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=96.82 E-value=0.023 Score=49.35 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=65.0
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..|+|||||-. |. . ++.. .+ .+.. ++++++|.. ++..|-+. ++..+.-...-+.|.|.|.||+||.
T Consensus 46 l~iwDt~G~e~-~~--~-l~~~--~~--~~ad-~~IlV~Dvt---~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 46 ISIWDTAGREQ-FH--G-LGSM--YC--RGAA-AVILTYDVS---NVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred EEEEeCCCccc-ch--h-hHHH--Hh--ccCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 57899999954 32 1 1111 12 2333 688899955 44444433 3333332223468999999999997
Q ss_pred cchhHhhhhccccHHHHH-HHhhhc-chhHHHHHHHHHH------HHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 147 TNKKEIEDYLNPESQFLL-SELNQH-MAPQFAKLNKSLI------ELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~-~~l~~~-~~~~~~~l~~~l~------~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.....-. .+.++.... ...... ......++.+++. +=+.-+.-+.|+..|+.++++|++++..+-+.
T Consensus 114 ~~~~~~~--~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~ 188 (220)
T cd04126 114 EEGALAG--QEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL 188 (220)
T ss_pred ccccccc--ccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence 5220000 000000000 000000 0000111111110 00001112579999999999999999887764
No 218
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.011 Score=51.58 Aligned_cols=137 Identities=19% Similarity=0.209 Sum_probs=76.2
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHH---hhcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM---VQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m---~~l~lP~InVlsK~DL 145 (236)
-=|||.|| |...-+++.++++..-.-..+||++||..+..--.=++-+|.-..+- ..-..|.+.+-||.|+
T Consensus 84 ~~LVD~PG------H~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl 157 (238)
T KOG0090|consen 84 VTLVDLPG------HSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDL 157 (238)
T ss_pred eEEEeCCC------cHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhh
Confidence 36899999 66667788888852112246899999977554444444444443333 3456677777899999
Q ss_pred ccc--hhHhhhhccccHHHHHHHhh------hcchhHHHHHHHHHHHHhhccC-------CeeEEEeeccCcccHHHHHH
Q 026584 146 VTN--KKEIEDYLNPESQFLLSELN------QHMAPQFAKLNKSLIELVDEYS-------MVSFMPLDLRKESSIRYVLS 210 (236)
Q Consensus 146 l~~--~~~l~~~l~~~~~~l~~~l~------~~~~~~~~~l~~~l~~li~d~~-------lv~f~pls~~d~~~i~~L~~ 210 (236)
.-. .+.+.+-++.....+.++-+ .+...+-.-+.. =-.||. -++|.+-|++++ .+..+..
T Consensus 158 ~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~----~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~ 232 (238)
T KOG0090|consen 158 FTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGK----EGEDFKFSHLEDQKVTFAEASAKTG-EIDQWES 232 (238)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccc----cccccchhhcccceeEEeecccCcC-ChHHHHH
Confidence 842 22233333322222211110 000000000000 011221 278999999988 8899988
Q ss_pred HHHHhh
Q 026584 211 QIDNCI 216 (236)
Q Consensus 211 ~Id~~~ 216 (236)
.|++++
T Consensus 233 wi~~~l 238 (238)
T KOG0090|consen 233 WIREAL 238 (238)
T ss_pred HHHHhC
Confidence 888753
No 219
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.81 E-value=0.0073 Score=49.76 Aligned_cols=89 Identities=13% Similarity=0.279 Sum_probs=52.3
Q ss_pred HHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHH
Q 026584 88 RNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSE 166 (236)
Q Consensus 88 ~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~ 166 (236)
+++.+.++ +.. ++++++|+..- ......+.. .. .+.|++.|+||+||.... ....+.
T Consensus 11 ~~~~~~i~--~aD-~il~v~D~~~~~~~~~~~i~~-------~~-~~k~~ilVlNK~Dl~~~~-~~~~~~---------- 68 (171)
T cd01856 11 RQIKEKLK--LVD-LVIEVRDARIPLSSRNPLLEK-------IL-GNKPRIIVLNKADLADPK-KTKKWL---------- 68 (171)
T ss_pred HHHHHHHh--hCC-EEEEEeeccCccCcCChhhHh-------Hh-cCCCEEEEEehhhcCChH-HHHHHH----------
Confidence 34444443 334 58999998642 222222211 11 268999999999996432 111110
Q ss_pred hhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 167 LNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 167 l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
+.+... ...++++|+.++++++.|...+-+.+
T Consensus 69 -----------------~~~~~~-~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 69 -----------------KYFESK-GEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred -----------------HHHHhc-CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 001111 14678999999999999999988754
No 220
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.79 E-value=0.0071 Score=54.07 Aligned_cols=90 Identities=17% Similarity=0.349 Sum_probs=54.1
Q ss_pred HHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHH
Q 026584 88 RNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSE 166 (236)
Q Consensus 88 ~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~ 166 (236)
+.+-+.+++ .. ++++++|+..- +.....+... + -+.|+|.|+||+||.+.. +...|.+
T Consensus 13 ~~~~~~l~~--aD-vVl~V~Dar~p~~~~~~~i~~~-------l-~~kp~IiVlNK~DL~~~~-~~~~~~~--------- 71 (276)
T TIGR03596 13 REIKEKLKL--VD-VVIEVLDARIPLSSRNPMIDEI-------R-GNKPRLIVLNKADLADPA-VTKQWLK--------- 71 (276)
T ss_pred HHHHHHHhh--CC-EEEEEEeCCCCCCCCChhHHHH-------H-CCCCEEEEEEccccCCHH-HHHHHHH---------
Confidence 334444433 33 68999999642 2222222221 1 278999999999996432 2221111
Q ss_pred hhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 167 LNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 167 l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.+ ...+ ..++++|+.++.+++.|...+.+...
T Consensus 72 -------~~-----------~~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 72 -------YF-----------EEKG-IKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred -------HH-----------HHcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 01 1111 36789999999999999988877654
No 221
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.75 E-value=0.012 Score=47.59 Aligned_cols=108 Identities=16% Similarity=0.247 Sum_probs=60.9
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
+-+.|||||-.... +....- .+.. ++++++|... +..| +..++-.+.....-++|.+.|-||+||.
T Consensus 51 l~i~D~~g~~~~~~-------~~~~~~-~~~~-~~i~v~d~~~---~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 51 IQIWDTAGQERYQT-------ITKQYY-RRAQ-GIFLVYDISS---ERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred EEEEeCCCcHhHHh-------hHHHHh-cCCc-EEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 46889999754222 111121 2333 5788888653 3333 2333322222222368999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+.. .... +....+ ...++ ..|++.|++++.++++++..|-+.
T Consensus 119 ~~~-~v~~----------------------~~~~~~---~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 119 QKR-QVGD----------------------EQGNKL---AKEYG-MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ccc-CCCH----------------------HHHHHH---HHHcC-CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 432 1100 000011 11223 578999999999999999887543
No 222
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.75 E-value=0.018 Score=50.44 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=67.1
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.-|.|||||-+ |.. ++. ... .+.. +++++.|. +++..|-+. |+--+.. ..-+.|.|.|.||+||
T Consensus 63 l~iwDTaG~e~-~~~---~~~--~~~--~~ad-~vIlVyDi---t~~~Sf~~~~~~w~~~i~~-~~~~~piilVgNK~DL 129 (232)
T cd04174 63 LSLWDTSGSPY-YDN---VRP--LCY--SDSD-AVLLCFDI---SRPETVDSALKKWKAEIMD-YCPSTRILLIGCKTDL 129 (232)
T ss_pred EEEEeCCCchh-hHH---HHH--HHc--CCCc-EEEEEEEC---CChHHHHHHHHHHHHHHHH-hCCCCCEEEEEECccc
Confidence 56889999854 321 111 112 2344 57888886 466666542 3222221 2237899999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc-cHHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~-~i~~L~~~Id~~ 215 (236)
-...+.+...... -..... .....++...++...|+..|+++++ ++++++..+-+.
T Consensus 130 ~~~~~~~~~l~~~--------~~~~Vs------~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 130 RTDLSTLMELSNQ--------KQAPIS------YEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred ccccchhhhhccc--------cCCcCC------HHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHH
Confidence 5432111110000 000000 0111234456676689999999997 899999987664
No 223
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.73 E-value=0.028 Score=45.65 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=59.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DL 145 (236)
+.-++|||||-++-. ++. ..++ +.+ ++++++|+.. +..+-+. ++..+. ...-+.|.+.|.||+|+
T Consensus 45 ~l~i~Dt~G~~~~~~----~~~--~~~~--~ad-~ii~V~D~t~---~~s~~~~~~~l~~~~-~~~~~~piilv~NK~Dl 111 (164)
T cd04162 45 IMELLEIGGSQNLRK----YWK--RYLS--GSQ-GLIFVVDSAD---SERLPLARQELHQLL-QHPPDLPLVVLANKQDL 111 (164)
T ss_pred EEEEEECCCCcchhH----HHH--HHHh--hCC-EEEEEEECCC---HHHHHHHHHHHHHHH-hCCCCCcEEEEEeCcCC
Confidence 468899999965321 111 2232 334 5789999654 3333221 112121 11248999999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccC------cccHHHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK------ESSIRYVLSQI 212 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d------~~~i~~L~~~I 212 (236)
.... ... .+...+. . .++..+.+ ..|++.|+.+ ++++++++...
T Consensus 112 ~~~~-~~~--------~i~~~~~--~-----------~~~~~~~~-~~~~~~Sa~~~~s~~~~~~v~~~~~~~ 161 (164)
T cd04162 112 PAAR-SVQ--------EIHKELE--L-----------EPIARGRR-WILQGTSLDDDGSPSRMEAVKDLLSQL 161 (164)
T ss_pred cCCC-CHH--------HHHHHhC--C-----------hhhcCCCc-eEEEEeeecCCCChhHHHHHHHHHHHH
Confidence 5432 111 1111110 0 01222333 5788999999 88888877653
No 224
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.72 E-value=0.038 Score=46.59 Aligned_cols=128 Identities=7% Similarity=0.097 Sum_probs=67.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
+..++||||+-+... .....++.+.-.+..+ .+++.+.. ++.....+. ....+.+.|.+.|+||+|+..
T Consensus 53 ~l~l~DtpG~~~~~~---~~~~~l~~~~~~~~d~-~l~v~~~~-~~~~d~~~~------~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 53 NVTLWDLPGIGSTAF---PPDDYLEEMKFSEYDF-FIIISSTR-FSSNDVKLA------KAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CceEEeCCCCCcccC---CHHHHHHHhCccCcCE-EEEEeCCC-CCHHHHHHH------HHHHHhCCCEEEEEecccchh
Confidence 578999999776432 2333344432123333 44444444 333333222 222335889999999999975
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccC--cccHHHHHHHHHHhhc
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRK--ESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d--~~~i~~L~~~Id~~~~ 217 (236)
.......-.....+. ....+.+.+.+.+...+. -.++++|+.+ +.++.+|...|-..+.
T Consensus 122 ~~~~~~~~~~~~~~~-----------~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 122 SNEQRSKPRSFNREQ-----------VLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred hhhhccccccccHHH-----------HHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 431111000000111 122333344444544443 5889999984 5788888887766553
No 225
>PLN03108 Rab family protein; Provisional
Probab=96.70 E-value=0.03 Score=47.67 Aligned_cols=107 Identities=13% Similarity=0.181 Sum_probs=59.4
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
+-++|||||..+.. +....- .+.. ++|+++|+.. +..|-. .++-.+.....-.+|.+.|.||+||.
T Consensus 57 l~l~Dt~G~~~~~~-------~~~~~~-~~ad-~~vlv~D~~~---~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 57 LQIWDTAGQESFRS-------ITRSYY-RGAA-GALLVYDITR---RETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred EEEEeCCCcHHHHH-------HHHHHh-ccCC-EEEEEEECCc---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 45889999854211 111111 2333 5788889753 333322 23222222222378999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
+.. .+ . .+ . -. ++..+++ +.++++|+++++++.+++..+-+
T Consensus 125 ~~~-~~----~--~~---------~---~~-------~~~~~~~-~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 125 HRR-AV----S--TE---------E---GE-------QFAKEHG-LIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred ccc-CC----C--HH---------H---HH-------HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHH
Confidence 532 11 0 00 0 00 1122344 47999999999999997755543
No 226
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.65 E-value=0.015 Score=46.86 Aligned_cols=93 Identities=12% Similarity=0.226 Sum_probs=55.1
Q ss_pred HHHHHHHhhCCCceEEEEeecCCCc-cchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHH
Q 026584 88 RNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSE 166 (236)
Q Consensus 88 ~~iv~~L~~~~~~~~~V~LiD~~~~-~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~ 166 (236)
+++++++.+ +.. ++++++|+..- ......+... ....+.|.+.|+||+|+.+.. ....
T Consensus 3 ~~~~~~i~~-~aD-~vl~V~D~~~~~~~~~~~l~~~------~~~~~~p~iiv~NK~Dl~~~~-~~~~------------ 61 (156)
T cd01859 3 KRLVRRIIK-ESD-VVLEVLDARDPELTRSRKLERY------VLELGKKLLIVLNKADLVPKE-VLEK------------ 61 (156)
T ss_pred HHHHHHHHh-hCC-EEEEEeeCCCCcccCCHHHHHH------HHhCCCcEEEEEEhHHhCCHH-HHHH------------
Confidence 344555533 344 58899998542 2222222111 123589999999999996432 1110
Q ss_pred hhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 167 LNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 167 l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
+.. +.+..+ ..++++|+.++++++.|...+.+.+.
T Consensus 62 --------~~~-------~~~~~~-~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 62 --------WKS-------IKESEG-IPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred --------HHH-------HHHhCC-CcEEEEEccccccHHHHHHHHHHHHh
Confidence 000 011112 46789999999999999999987654
No 227
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.61 E-value=0.037 Score=47.15 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=68.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.-=||+||||.= .+.+.+-+.+ + ..-+|+|+|+..-.+- ...+-..+. .+-.+|.+.+.||.||-
T Consensus 69 ~v~LfgtPGq~R-------F~fm~~~l~~-g-a~gaivlVDss~~~~~~a~~ii~f~~-----~~~~ip~vVa~NK~DL~ 134 (187)
T COG2229 69 GVHLFGTPGQER-------FKFMWEILSR-G-AVGAIVLVDSSRPITFHAEEIIDFLT-----SRNPIPVVVAINKQDLF 134 (187)
T ss_pred eEEEecCCCcHH-------HHHHHHHHhC-C-cceEEEEEecCCCcchHHHHHHHHHh-----hccCCCEEEEeeccccC
Confidence 347999999854 2344444533 3 3568899998654443 122211111 11129999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc-CCeeEEEeeccCcccHHHHHHHHHHhhcccc
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 220 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~-~lv~f~pls~~d~~~i~~L~~~Id~~~~y~e 220 (236)
... .++ ++++ ++..- --+..++.++.++++..+.+..+....+|+.
T Consensus 135 ~a~---------ppe------------~i~e-------~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~~~~~~ 181 (187)
T COG2229 135 DAL---------PPE------------KIRE-------ALKLELLSVPVIEIDATEGEGARDQLDVLLLKDLLGS 181 (187)
T ss_pred CCC---------CHH------------HHHH-------HHHhccCCCceeeeecccchhHHHHHHHHHhhcccCc
Confidence 532 111 1111 11111 1288999999999999999998888766653
No 228
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=96.61 E-value=0.045 Score=46.70 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=61.5
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.-|.|||||-+ |.. ++. ..+ .+.. ++++++|+.. +..|-+ .++--+-- ..-++|.+.|.||+||.
T Consensus 46 l~iwDt~G~e~-~~~---l~~--~~~--~~ad-~~ilV~D~t~---~~S~~~i~~w~~~i~~-~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 46 FNVWDTAGQEK-FGG---LRD--GYY--IQGQ-CAIIMFDVTA---RVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEECCCchh-hhh---hhH--HHh--cCCC-EEEEEEECCC---hHHHHHHHHHHHHHHH-hCCCCCEEEEEECcccc
Confidence 45889999955 321 111 122 2333 5678888654 344432 22221211 12479999999999984
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
.+. . . .+ ..+ ++ ... -..|+..|++++++|..++..+-+.+
T Consensus 113 ~~~--v----~--~~-------------~~~----~~---~~~-~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 113 DRK--V----K--AK-------------SIT----FH---RKK-NLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred ccc--C----C--HH-------------HHH----HH---HHc-CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 321 0 0 00 001 11 112 26799999999999999999998755
No 229
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.022 Score=53.34 Aligned_cols=115 Identities=16% Similarity=0.322 Sum_probs=76.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
++-++|||| |...+|.|+-.-+- +.+ .+.++|++.-..+..-= +| .+=-.+--..|.|+||+|++.
T Consensus 71 q~tlvDCPG------HasLIRtiiggaqi--iDl-m~lviDv~kG~QtQtAE--cL---iig~~~c~klvvvinkid~lp 136 (522)
T KOG0461|consen 71 QFTLVDCPG------HASLIRTIIGGAQI--IDL-MILVIDVQKGKQTQTAE--CL---IIGELLCKKLVVVINKIDVLP 136 (522)
T ss_pred eeEEEeCCC------cHHHHHHHHhhhhe--eee-eeEEEehhcccccccch--hh---hhhhhhccceEEEEecccccc
Confidence 689999999 66667777666532 333 66788986644333211 11 111113345678899999986
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC---eeEEEeeccCc----ccHHHHHHHHHHhh
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM---VSFMPLDLRKE----SSIRYVLSQIDNCI 216 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l---v~f~pls~~d~----~~i~~L~~~Id~~~ 216 (236)
... ..++..++.+++..-++..++ ..++|+|+.++ +++.+|...+...+
T Consensus 137 E~q--------------------r~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 137 ENQ--------------------RASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred chh--------------------hhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 531 123556667777777777765 78999999999 89999988887754
No 230
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.57 E-value=0.023 Score=47.25 Aligned_cols=119 Identities=10% Similarity=0.112 Sum_probs=66.7
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH---HHHHHHHHHhhcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS---GCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is---~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.-|.|||||-+ |.. ++. +.-.+.. +++++.|. +++.+|-+ .++-.+... .-..|.|.|-||+||
T Consensus 51 l~iwDt~G~~~-~~~---~~~----~~~~~a~-~~ilvfdi---t~~~Sf~~~~~~w~~~i~~~-~~~~~iilVgnK~DL 117 (178)
T cd04131 51 LSLWDTSGSPY-YDN---VRP----LCYPDSD-AVLICFDI---SRPETLDSVLKKWRGEIQEF-CPNTKVLLVGCKTDL 117 (178)
T ss_pred EEEEECCCchh-hhh---cch----hhcCCCC-EEEEEEEC---CChhhHHHHHHHHHHHHHHH-CCCCCEEEEEEChhh
Confidence 46889999844 211 111 1112344 57788886 45666543 233222222 247899999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhh-cchhHHHHHHHHHHHHhhccCCeeEEEeeccCccc-HHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS-IRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~-~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~-i~~L~~~Id~~ 215 (236)
....+....+-. ... ... .+...++...++...|+-.|++++++ +++++..+=++
T Consensus 118 ~~~~~~~~~~~~---------~~~~~v~------~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 118 RTDLSTLMELSH---------QRQAPVS------YEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred hcChhHHHHHHh---------cCCCCCC------HHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 543211111000 000 000 01122344567767899999999995 99999887663
No 231
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=96.54 E-value=0.026 Score=47.27 Aligned_cols=120 Identities=9% Similarity=0.106 Sum_probs=67.1
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.-|.||+||-+ |. .+ ..+.-.+.. +++++.|. +++.+|-+. ++-.+.. ..-+.|.|.|.||+||
T Consensus 55 l~iwDtaG~e~-~~---~~----~~~~~~~ad-~~ilvyDi---t~~~Sf~~~~~~w~~~i~~-~~~~~piilVgNK~DL 121 (182)
T cd04172 55 LSLWDTSGSPY-YD---NV----RPLSYPDSD-AVLICFDI---SRPETLDSVLKKWKGEIQE-FCPNTKMLLVGCKSDL 121 (182)
T ss_pred EEEEECCCchh-hH---hh----hhhhcCCCC-EEEEEEEC---CCHHHHHHHHHHHHHHHHH-HCCCCCEEEEeEChhh
Confidence 56889999844 21 11 112112344 57788884 566666442 2222222 2237899999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCccc-HHHHHHHHHHh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS-IRYVLSQIDNC 215 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~-i~~L~~~Id~~ 215 (236)
-.....+..... .-...-. .+...++...++...|+-.|++++++ |++++..+-++
T Consensus 122 ~~~~~~~~~~~~--------~~~~~v~------~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 122 RTDLTTLVELSN--------HRQTPVS------YDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred hcChhhHHHHHh--------cCCCCCC------HHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 543211111000 0000000 01122444567777999999999998 99999887663
No 232
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.54 E-value=0.012 Score=52.99 Aligned_cols=91 Identities=18% Similarity=0.372 Sum_probs=54.3
Q ss_pred HHHHHHHHhhCCCceEEEEeecCCCccc-hhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHH
Q 026584 87 LRNFVDHLKSRNFNVCAVYLLDSQFITD-VTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLS 165 (236)
Q Consensus 87 ~~~iv~~L~~~~~~~~~V~LiD~~~~~d-p~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~ 165 (236)
.+.+-+.+++. . ++++++|+..-.. -...+.. ... +.|.+.|+||+||.+.. ....|.+
T Consensus 15 ~~~l~~~l~~a--D-vIL~VvDar~p~~~~~~~l~~-------~~~-~kp~iiVlNK~DL~~~~-~~~~~~~-------- 74 (287)
T PRK09563 15 RREIKENLKLV--D-VVIEVLDARIPLSSENPMIDK-------IIG-NKPRLLILNKSDLADPE-VTKKWIE-------- 74 (287)
T ss_pred HHHHHHHhhhC--C-EEEEEEECCCCCCCCChhHHH-------HhC-CCCEEEEEEchhcCCHH-HHHHHHH--------
Confidence 34444445333 3 5899999954322 2222211 112 78999999999996432 2222111
Q ss_pred HhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 166 ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 166 ~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
.+ +..+ ..++++|+.++.++..|...+.+.+.
T Consensus 75 --------~~-----------~~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 75 --------YF-----------EEQG-IKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred --------HH-----------HHcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 01 1111 45789999999999999998877653
No 233
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=96.53 E-value=0.025 Score=49.20 Aligned_cols=121 Identities=13% Similarity=0.067 Sum_probs=67.7
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.-|.|||||-++...+ .+.-.+.. ++++++|. +++..|=+. ......-...-+.|.|.|.||+||.
T Consensus 51 L~iwDt~G~e~~~~l~--------~~~~~~~d-~illvfdi---s~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 51 LNMWDTSGSSYYDNVR--------PLAYPDSD-AVLICFDI---SRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred EEEEeCCCcHHHHHHh--------HHhccCCC-EEEEEEEC---CCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 4578999996533211 11112444 57888884 455555333 1222222223479999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc-cHHHHHHHHHHh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNC 215 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~-~i~~L~~~Id~~ 215 (236)
.....+...-+.. ..+- - .+.-.++...++...|+-.|+.+++ +|.+++..+-++
T Consensus 119 ~~~~~~~~~~~~~--------~~pI---s---~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 119 TDLATLRELSKQR--------LIPV---T---HEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred cchhhhhhhhhcc--------CCcc---C---HHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 5331111100000 0000 0 0111233456677799999999888 599999888774
No 234
>COG2262 HflX GTPases [General function prediction only]
Probab=96.42 E-value=0.038 Score=52.33 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=71.1
Q ss_pred CCEEEEeCCCceeeeeccc--hHHHHHHHHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 67 DDYLVFDCPGQIELFTHVP--VLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~--~~~~iv~~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
..-++=||=|-| .+-+ .+..+=..|.. .... +.++++|++.= +...-+....--+.-+--.+.|+|.|+||+
T Consensus 240 ~~vlLtDTVGFI---~~LP~~LV~AFksTLEE~~~aD-lllhVVDaSdp-~~~~~~~~v~~vL~el~~~~~p~i~v~NKi 314 (411)
T COG2262 240 RKVLLTDTVGFI---RDLPHPLVEAFKSTLEEVKEAD-LLLHVVDASDP-EILEKLEAVEDVLAEIGADEIPIILVLNKI 314 (411)
T ss_pred ceEEEecCccCc---ccCChHHHHHHHHHHHHhhcCC-EEEEEeecCCh-hHHHHHHHHHHHHHHcCCCCCCEEEEEecc
Confidence 357888999932 2222 23333334432 3444 58999997543 333333333322333323578999999999
Q ss_pred ccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 144 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 144 DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
|++.+. ... ..+....- ..+++|+.++++++.|...|.+.+..
T Consensus 315 D~~~~~-~~~------------------------------~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 315 DLLEDE-EIL------------------------------AELERGSP-NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred cccCch-hhh------------------------------hhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 998665 100 11222222 68999999999999999999998774
No 235
>PRK13351 elongation factor G; Reviewed
Probab=96.41 E-value=0.078 Score=53.32 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=41.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
.+.++|||||.++. ......++. .. ++++++|+..-..... .-+ +....+.++|++.|+||+|+..
T Consensus 74 ~i~liDtPG~~df~------~~~~~~l~~--aD-~~ilVvd~~~~~~~~~---~~~--~~~~~~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 74 RINLIDTPGHIDFT------GEVERSLRV--LD-GAVVVFDAVTGVQPQT---ETV--WRQADRYGIPRLIFINKMDRVG 139 (687)
T ss_pred EEEEEECCCcHHHH------HHHHHHHHh--CC-EEEEEEeCCCCCCHHH---HHH--HHHHHhcCCCEEEEEECCCCCC
Confidence 57899999987622 122333432 23 4788899865322221 111 1223456899999999999986
Q ss_pred c
Q 026584 148 N 148 (236)
Q Consensus 148 ~ 148 (236)
.
T Consensus 140 ~ 140 (687)
T PRK13351 140 A 140 (687)
T ss_pred C
Confidence 4
No 236
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=96.28 E-value=0.063 Score=46.12 Aligned_cols=107 Identities=11% Similarity=0.195 Sum_probs=61.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+-|.|||||-... .+....- .+.. ++|+++|... +..|-. .++-.+... .-+.|.+.|.||+|+
T Consensus 63 ~l~i~Dt~G~~~~~-------~~~~~~~-~~~~-~~ilvfD~~~---~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl 129 (219)
T PLN03071 63 RFYCWDTAGQEKFG-------GLRDGYY-IHGQ-CAIIMFDVTA---RLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV 129 (219)
T ss_pred EEEEEECCCchhhh-------hhhHHHc-cccc-EEEEEEeCCC---HHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhh
Confidence 46789999985521 1111121 1233 5788888653 444332 232222222 247999999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
..+. . . .+. + + +.... -..|+..|++++.++.+++..+-+.+
T Consensus 130 ~~~~--v----~--~~~----~---------~-------~~~~~-~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 130 KNRQ--V----K--AKQ----V---------T-------FHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred hhcc--C----C--HHH----H---------H-------HHHhc-CCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 4321 0 0 000 0 1 11122 26789999999999999997776544
No 237
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.27 E-value=0.047 Score=49.00 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=41.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHh--------------h-C---CCc-eEEEEeecCCC-ccchhhHHHHHHHHHH
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLK--------------S-R---NFN-VCAVYLLDSQF-ITDVTKFISGCMASLS 127 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~--------------~-~---~~~-~~~V~LiD~~~-~~dp~~~is~~l~sls 127 (236)
++.++||||.=+-.........|++++. + . +.+ -+++|++++.. -..+.+.- + +.
T Consensus 64 ~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~--~---lk 138 (276)
T cd01850 64 KLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE--F---MK 138 (276)
T ss_pred EEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH--H---HH
Confidence 4799999996554333344444443221 0 0 111 35788887653 22232211 1 11
Q ss_pred HHhhcCCCEEEEecccccccch
Q 026584 128 AMVQLELPHVNILSKMDLVTNK 149 (236)
Q Consensus 128 ~m~~l~lP~InVlsK~DLl~~~ 149 (236)
.+ +-+.|+|.|+||+|++...
T Consensus 139 ~l-~~~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 139 RL-SKRVNIIPVIAKADTLTPE 159 (276)
T ss_pred HH-hccCCEEEEEECCCcCCHH
Confidence 11 2279999999999998644
No 238
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.26 E-value=0.042 Score=46.50 Aligned_cols=123 Identities=10% Similarity=0.109 Sum_probs=63.4
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH---HHHHHHHHhhcCCCEEEEecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG---CMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~---~l~sls~m~~l~lP~InVlsK~D 144 (236)
..-|.||+||-+ + ++ .+.-.+.. +++++.|. +++.+|-.. ++--+... .-+.|.|.|.||+|
T Consensus 67 ~l~iwDTaG~~~-~-----~~----~~~~~~ad-~iilv~d~---t~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~D 131 (195)
T cd01873 67 SLRLWDTFGDHD-K-----DR----RFAYGRSD-VVLLCFSI---ASPNSLRNVKTMWYPEIRHF-CPRVPVILVGCKLD 131 (195)
T ss_pred EEEEEeCCCChh-h-----hh----cccCCCCC-EEEEEEEC---CChhHHHHHHHHHHHHHHHh-CCCCCEEEEEEchh
Confidence 457899999954 1 11 12112333 46777785 455555432 22222211 13789999999999
Q ss_pred cccchh-HhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 145 LVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 145 Ll~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
|..... .......+ +........ ..-. +...++..+++. .|+-.|+++++++++++..+-+
T Consensus 132 L~~~~~~~~~~~~~~----~~~~~~~~~-~V~~---~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 132 LRYADLDEVNRARRP----LARPIKNAD-ILPP---ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccccchhhhcccc----cccccccCC-ccCH---HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHH
Confidence 954210 00000000 000000000 0000 011123345565 8999999999999999988754
No 239
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.23 E-value=0.031 Score=44.47 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=63.5
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh--cCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ--LELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~--l~lP~InVlsK~DLl 146 (236)
.-|+|+|||-+... .+ ... -.+.. +++++.|. .++++|-...-+.-.+.-. -..|.+.|-||+|+.
T Consensus 50 l~i~D~~g~~~~~~----~~---~~~-~~~~~-~~ii~fd~---~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 50 LEIWDTSGQERFDS----LR---DIF-YRNSD-AIIIVFDV---TDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp EEEEEETTSGGGHH----HH---HHH-HTTES-EEEEEEET---TBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred cccccccccccccc----cc---ccc-ccccc-cccccccc---cccccccccccccccccccccccccceeeecccccc
Confidence 46789999753221 11 122 12233 45666674 4555554443333222322 258999999999986
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
... ++. . +...++..+++ ..|+-+|++++.++.+++..+=+.
T Consensus 118 ~~~-~v~------~-------------------~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 118 DER-EVS------V-------------------EEAQEFAKELG-VPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp GGS-SSC------H-------------------HHHHHHHHHTT-SEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred ccc-cch------h-------------------hHHHHHHHHhC-CEEEEEECCCCCCHHHHHHHHHHH
Confidence 422 110 0 01113345677 999999999999999998877554
No 240
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.17 E-value=0.033 Score=53.48 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=86.7
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcccC----------CCCEEEEeCCCceeeeeccchHHHH-HHHH-hh-CCCceEEE
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELDNYL----------DDDYLVFDCPGQIELFTHVPVLRNF-VDHL-KS-RNFNVCAV 104 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~~~----------~~~Yil~D~PGQiElf~~~~~~~~i-v~~L-~~-~~~~~~~V 104 (236)
||.|...-+|.|...=..+..+..+... .-..-|+||-|.-| +.+.+-++ +++- +. .... .++
T Consensus 226 PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe---t~d~VE~iGIeRs~~~i~~AD-lvL 301 (454)
T COG0486 226 PNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE---TDDVVERIGIERAKKAIEEAD-LVL 301 (454)
T ss_pred CCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCccc---CccHHHHHHHHHHHHHHHhCC-EEE
Confidence 9999999999988532133332222210 11468999999554 44444332 2222 11 2344 489
Q ss_pred EeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH
Q 026584 105 YLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE 184 (236)
Q Consensus 105 ~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~ 184 (236)
|++|+..-.+..+... +. ..+-+.|++.|+||+||.+.. ....
T Consensus 302 ~v~D~~~~~~~~d~~~-----~~-~~~~~~~~i~v~NK~DL~~~~-~~~~------------------------------ 344 (454)
T COG0486 302 FVLDASQPLDKEDLAL-----IE-LLPKKKPIIVVLNKADLVSKI-ELES------------------------------ 344 (454)
T ss_pred EEEeCCCCCchhhHHH-----HH-hcccCCCEEEEEechhccccc-ccch------------------------------
Confidence 9999987422222221 11 456689999999999998754 1110
Q ss_pred HhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584 185 LVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 185 li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
+ +-..-..++++|++++++++.|..+|.+.++..
T Consensus 345 ~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 345 E-KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred h-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 0 011113689999999999999999999988877
No 241
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.032 Score=53.22 Aligned_cols=105 Identities=16% Similarity=0.315 Sum_probs=69.3
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCC---CccchhhHHHHHHHHHHHHhhcCCCE-EEEecccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ---FITDVTKFISGCMASLSAMVQLELPH-VNILSKMD 144 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~---~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~D 144 (236)
--++|.|| |-+-++.++..+ .++. ++++++|+. ...+-.. +.+.-.|+.++ +.|+||+|
T Consensus 52 ~~fIDvpg------h~~~i~~miag~--~~~d-~alLvV~~deGl~~qtgEh--------L~iLdllgi~~giivltk~D 114 (447)
T COG3276 52 MGFIDVPG------HPDFISNLLAGL--GGID-YALLVVAADEGLMAQTGEH--------LLILDLLGIKNGIIVLTKAD 114 (447)
T ss_pred eEEeeCCC------cHHHHHHHHhhh--cCCc-eEEEEEeCccCcchhhHHH--------HHHHHhcCCCceEEEEeccc
Confidence 47899999 444455555554 2344 688889883 3333333 44566689999 88899999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
..... .++. .+-+++.+.++ .+.++.|++.+++|++|-..|-+...
T Consensus 115 ~~d~~-r~e~--------------------------~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 115 RVDEA-RIEQ--------------------------KIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred cccHH-HHHH--------------------------HHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 97543 1211 11122222223 67799999999999999999888765
No 242
>PRK12289 GTPase RsgA; Reviewed
Probab=96.08 E-value=0.031 Score=52.10 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=62.9
Q ss_pred CCEEEEeCC------CceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCCCEEEE
Q 026584 67 DDYLVFDCP------GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNI 139 (236)
Q Consensus 67 ~~Yil~D~P------GQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~lP~InV 139 (236)
.++|.++.+ |.|+=-..|.+ .+.+-.-.+.. ++++++|+.--. ++ ..+.-+|... ...++|.|.|
T Consensus 55 GD~V~~~~~~~~~~~~~I~~vlpR~~---~L~R~~~aNvD-~vLlV~d~~~p~~~~-~~LdR~L~~a---~~~~ip~ILV 126 (352)
T PRK12289 55 GDRVIVEEPDWQGQRGAIAEVLPRKT---ELDRPPVANAD-QILLVFALAEPPLDP-WQLSRFLVKA---ESTGLEIVLC 126 (352)
T ss_pred CCEEEEeecCCCCCceEEEEEecccc---ceechhhhcCC-EEEEEEECCCCCCCH-HHHHHHHHHH---HHCCCCEEEE
Confidence 578988854 33432222221 11111113454 477888865321 22 2334443322 3468999999
Q ss_pred ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 140 LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 140 lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
+||+||++.. +...|. +.+...+ +.++++|+.++++++.|+..+..
T Consensus 127 lNK~DLv~~~-~~~~~~---------------------------~~~~~~g-~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 127 LNKADLVSPT-EQQQWQ---------------------------DRLQQWG-YQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEchhcCChH-HHHHHH---------------------------HHHHhcC-CeEEEEEcCCCCCHHHHhhhhcc
Confidence 9999997543 221111 1112233 36899999999999999988764
No 243
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=96.04 E-value=0.11 Score=47.68 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=30.5
Q ss_pred cCCeeEEEeeccCcccHHHHHH-HHHHhhcccccCCCCC
Q 026584 189 YSMVSFMPLDLRKESSIRYVLS-QIDNCIQWGEDADLKI 226 (236)
Q Consensus 189 ~~lv~f~pls~~d~~~i~~L~~-~Id~~~~y~ed~~~~~ 226 (236)
+.....+|+|+..+.++.+|.. .+-+.++.++..+...
T Consensus 240 ~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~ 278 (318)
T cd01899 240 YPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITD 278 (318)
T ss_pred CCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecc
Confidence 3446799999999999999997 5888888886666543
No 244
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.02 Score=53.42 Aligned_cols=77 Identities=22% Similarity=0.436 Sum_probs=57.3
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEE-ecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI-LSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InV-lsK~D 144 (236)
..+|-=+|||| |.+.+++++.--.+.+.-..+|--.|...=......+ |+ -..+++||.| +||.|
T Consensus 116 ~RhYaH~DCPG------HADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlL------LA--rQVGV~~ivvfiNKvD 181 (449)
T KOG0460|consen 116 KRHYAHTDCPG------HADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLL------LA--RQVGVKHIVVFINKVD 181 (449)
T ss_pred ccccccCCCCc------hHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHH------HH--HHcCCceEEEEEeccc
Confidence 46899999999 8889999887776666656677777887766777655 22 3468999999 79999
Q ss_pred cccchhHhhhhcc
Q 026584 145 LVTNKKEIEDYLN 157 (236)
Q Consensus 145 Ll~~~~~l~~~l~ 157 (236)
++.+. ++.++.+
T Consensus 182 ~V~d~-e~leLVE 193 (449)
T KOG0460|consen 182 LVDDP-EMLELVE 193 (449)
T ss_pred ccCCH-HHHHHHH
Confidence 99766 4544433
No 245
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=95.95 E-value=0.019 Score=55.86 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=50.2
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHh--h-CCCceEEEEeecCCCc--cchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLK--S-RNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~--~-~~~~~~~V~LiD~~~~--~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
|-++|||| +--|-..-+++++... . ...+.+++|++|-+-. ..++.-+.. +-++--.+ -+-|.|.|+|||
T Consensus 217 wQViDTPG---ILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkL-fhsIKpLF-aNK~~IlvlNK~ 291 (620)
T KOG1490|consen 217 WQVIDTPG---ILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKL-YHSIKPLF-ANKVTILVLNKI 291 (620)
T ss_pred eeecCCcc---ccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHH-HHHhHHHh-cCCceEEEeecc
Confidence 68999999 7767666777776653 1 3677899999997432 233332221 11111111 388999999999
Q ss_pred ccccch
Q 026584 144 DLVTNK 149 (236)
Q Consensus 144 DLl~~~ 149 (236)
|++..+
T Consensus 292 D~m~~e 297 (620)
T KOG1490|consen 292 DAMRPE 297 (620)
T ss_pred cccCcc
Confidence 999765
No 246
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.94 E-value=0.068 Score=44.54 Aligned_cols=87 Identities=10% Similarity=0.129 Sum_probs=50.3
Q ss_pred EEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH
Q 026584 102 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS 181 (236)
Q Consensus 102 ~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~ 181 (236)
++++++|+...... .... + . ....+.|.+.|+||+|+++.. .... . +. .+. ++
T Consensus 37 ~il~VvD~~~~~~~--~~~~-l---~-~~~~~~~~ilV~NK~Dl~~~~-~~~~-------~----~~-----~~~---~~ 89 (190)
T cd01855 37 LVVHVVDIFDFPGS--LIPR-L---R-LFGGNNPVILVGNKIDLLPKD-KNLV-------R----IK-----NWL---RA 89 (190)
T ss_pred EEEEEEECccCCCc--cchh-H---H-HhcCCCcEEEEEEchhcCCCC-CCHH-------H----HH-----HHH---HH
Confidence 68999998643211 1111 1 1 112478999999999997543 1000 0 00 000 00
Q ss_pred HHHHhhc--cCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 182 LIELVDE--YSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 182 l~~li~d--~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
. .... +....++++|+.++++++.|+..|.+.+.
T Consensus 90 ~--~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 90 K--AAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred H--HHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 0 0011 22246899999999999999999988653
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.90 E-value=0.019 Score=43.75 Aligned_cols=67 Identities=16% Similarity=0.313 Sum_probs=37.5
Q ss_pred CCEEEEeCCCceeeeeccc---hHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584 67 DDYLVFDCPGQIELFTHVP---VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~---~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
..+.++||||-.+--.... ..+++.+.+ ...+ +++|++|+.... ..-...++ -.++-+.|.+.|+||
T Consensus 47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~~~d-~ii~vv~~~~~~--~~~~~~~~----~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 47 KKFILVDTPGINDGESQDNDGKEIRKFLEQI--SKSD-LIIYVVDASNPI--TEDDKNIL----RELKNKKPIILVLNK 116 (116)
T ss_dssp EEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--CTES-EEEEEEETTSHS--HHHHHHHH----HHHHTTSEEEEEEES
T ss_pred eeEEEEeCCCCcccchhhHHHHHHHHHHHHH--HHCC-EEEEEEECCCCC--CHHHHHHH----HHHhcCCCEEEEEcC
Confidence 3579999999333211111 233344444 2344 589999976621 11111111 122578999999998
No 248
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=95.86 E-value=0.14 Score=41.55 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=59.5
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHhh-cCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMVQ-LELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~~-l~lP~InVlsK~DL 145 (236)
.-|.||+||-. .. .. + +.. +++++.|.. ++..|-. .++--+....+ -++|.+.|-||+||
T Consensus 49 l~i~D~~g~~~--------~~---~~-~-~~~-~~ilv~d~~---~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl 111 (158)
T cd04103 49 LLIRDEGGAPD--------AQ---FA-S-WVD-AVIFVFSLE---NEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAI 111 (158)
T ss_pred EEEEECCCCCc--------hh---HH-h-cCC-EEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHh
Confidence 46789999832 11 12 2 223 577788854 4444443 23222322222 36899999999998
Q ss_pred ccch-hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 146 VTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 146 l~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
.... ..+ . .+..+++ ....+-..|+..|++++.+|++++..+-+
T Consensus 112 ~~~~~~~v----~------------------~~~~~~~---~~~~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 112 SESNPRVI----D------------------DARARQL---CADMKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred hhcCCccc----C------------------HHHHHHH---HHHhCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 4211 000 0 0011112 22344468999999999999999988754
No 249
>PRK00098 GTPase RsgA; Reviewed
Probab=95.81 E-value=0.065 Score=48.52 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=49.6
Q ss_pred CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHH
Q 026584 97 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFA 176 (236)
Q Consensus 97 ~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~ 176 (236)
.+.. ++++++|+..-..-...+--++..+ -..+.|.+.|+||+||.........
T Consensus 79 aniD-~vllV~d~~~p~~~~~~idr~L~~~---~~~~ip~iIVlNK~DL~~~~~~~~~---------------------- 132 (298)
T PRK00098 79 ANVD-QAVLVFAAKEPDFSTDLLDRFLVLA---EANGIKPIIVLNKIDLLDDLEEARE---------------------- 132 (298)
T ss_pred ecCC-EEEEEEECCCCCCCHHHHHHHHHHH---HHCCCCEEEEEEhHHcCCCHHHHHH----------------------
Confidence 3455 4677888742211122233333222 2468999999999999633211110
Q ss_pred HHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 177 KLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 177 ~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
..+.....+ ..++++|+.++++++.|...+-
T Consensus 133 -----~~~~~~~~g-~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 133 -----LLALYRAIG-YDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred -----HHHHHHHCC-CeEEEEeCCCCccHHHHHhhcc
Confidence 001122233 4789999999999999988774
No 250
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.79 E-value=0.16 Score=41.95 Aligned_cols=113 Identities=17% Similarity=0.241 Sum_probs=64.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHh-hcCCCEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~-~l~lP~InVlsK~DLl 146 (236)
.+-++|.+||-.+. +..+.. ++ +.+ .+||++|+.-... -.-....|..+.... .-+.|.+.++||+|+-
T Consensus 59 ~~~~~d~gG~~~~~---~~w~~y---~~--~~~-~iIfVvDssd~~~-l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 59 SLTIWDLGGQESFR---PLWKSY---FQ--NAD-GIIFVVDSSDPER-LQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp EEEEEEESSSGGGG---GGGGGG---HT--TES-EEEEEEETTGGGG-HHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred EEEEEecccccccc---ccceee---cc--ccc-eeEEEEeccccee-ecccccchhhhcchhhcccceEEEEecccccc
Confidence 57899999986532 222211 21 333 5899999874321 111112222222221 1379999999999986
Q ss_pred cch--hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 147 TNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 147 ~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
... .++...+. +. + +..-.-+.+++.|+.+++++.+.+..+-+.
T Consensus 129 ~~~~~~~i~~~l~---------l~---------------~-l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 129 DAMSEEEIKEYLG---------LE---------------K-LKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TSSTHHHHHHHTT---------GG---------------G-TTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred CcchhhHHHhhhh---------hh---------------h-cccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 432 11221111 00 0 112223789999999999999999887653
No 251
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=95.79 E-value=0.13 Score=47.53 Aligned_cols=145 Identities=17% Similarity=0.255 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHH---hhHHHH----HHHhcc--cC-CCCEEEEeCCCceeee-eccchHHHHHHHHhhCCCceEEEEe
Q 026584 38 PNGGLIYCMEHLED---NLDDWL----AEELDN--YL-DDDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYL 106 (236)
Q Consensus 38 PNGalv~~me~l~~---n~~~wl----~~~i~~--~~-~~~Yil~D~PGQiElf-~~~~~~~~iv~~L~~~~~~~~~V~L 106 (236)
||.|..+-++.+.. ++-+|= .-+|.. +. ..++-+-|.||-||== ..+--+.++++.+.+. + ..+|+
T Consensus 205 PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~--~-~l~fV 281 (366)
T KOG1489|consen 205 PNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC--K-GLLFV 281 (366)
T ss_pred CCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh--c-eEEEE
Confidence 99999998888863 222331 111221 10 1247899999988833 4455578898888653 2 47999
Q ss_pred ecCCCc--cchhhHHHHHHHHHHHHhh--cCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHH
Q 026584 107 LDSQFI--TDVTKFISGCMASLSAMVQ--LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL 182 (236)
Q Consensus 107 iD~~~~--~dp~~~is~~l~sls~m~~--l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l 182 (236)
+|.+.. .+|-.-+-.+..-+-..-. -.-|++.|.||+|+...+..+ + ++|...+.
T Consensus 282 vD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l----~~L~~~lq-------------- 340 (366)
T KOG1489|consen 282 VDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---L----SSLAKRLQ-------------- 340 (366)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---H----HHHHHHcC--------------
Confidence 998765 3555545433333322211 367999999999995322111 0 11111111
Q ss_pred HHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 183 IELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 183 ~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
-...+|+|++.+++++.|+..+-+
T Consensus 341 --------~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 341 --------NPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred --------CCcEEEeeeccccchHHHHHHHhh
Confidence 127999999999999999987754
No 252
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=95.76 E-value=0.34 Score=47.55 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=41.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..+.++||||+..+ . ......+.. .. ++|+++|+..--.+. ..-+ +....+.++|.+.++||+|+.
T Consensus 79 ~~inliDTPG~~df-~-----~~~~~~l~~--aD-~aIlVvDa~~gv~~~---t~~l--~~~~~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 79 CLINLLDTPGHEDF-S-----EDTYRTLTA--VD-SALMVIDAAKGVEPQ---TRKL--MEVCRLRDTPIFTFINKLDRD 144 (526)
T ss_pred EEEEEEECCCchhh-H-----HHHHHHHHH--CC-EEEEEEecCCCCCHH---HHHH--HHHHHhcCCCEEEEEECCccc
Confidence 35799999997652 1 223344533 33 588899986422221 1111 223344699999999999987
Q ss_pred c
Q 026584 147 T 147 (236)
Q Consensus 147 ~ 147 (236)
.
T Consensus 145 ~ 145 (526)
T PRK00741 145 G 145 (526)
T ss_pred c
Confidence 5
No 253
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.71 E-value=0.072 Score=49.58 Aligned_cols=97 Identities=19% Similarity=0.264 Sum_probs=56.1
Q ss_pred HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHH
Q 026584 87 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSE 166 (236)
Q Consensus 87 ~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~ 166 (236)
.++++..+.+ + .-++++++|+.- -+..+...+.- ..+ +.|.+.|+||+||+.+....+ .
T Consensus 53 f~~~l~~~~~-~-~~~Il~VvD~~d--~~~s~~~~l~~----~~~-~~piilV~NK~DLl~k~~~~~--------~---- 111 (360)
T TIGR03597 53 FLNLLNSLGD-S-NALIVYVVDIFD--FEGSLIPELKR----FVG-GNPVLLVGNKIDLLPKSVNLS--------K---- 111 (360)
T ss_pred HHHHHhhccc-C-CcEEEEEEECcC--CCCCccHHHHH----HhC-CCCEEEEEEchhhCCCCCCHH--------H----
Confidence 3445555422 2 236999999732 22233322211 111 789999999999985431000 0
Q ss_pred hhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHh
Q 026584 167 LNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 167 l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
..++ +.+....+++ ..++++|++++.+++.|+..|.+.
T Consensus 112 --------~~~~---l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 112 --------IKEW---MKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred --------HHHH---HHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 0111 1112234444 368999999999999999999764
No 254
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=95.62 E-value=0.079 Score=46.87 Aligned_cols=76 Identities=9% Similarity=0.143 Sum_probs=43.6
Q ss_pred CCEEEEeCCCceeeeec-----cchHHHHHHHHh-h--CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE
Q 026584 67 DDYLVFDCPGQIELFTH-----VPVLRNFVDHLK-S--RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 138 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~-----~~~~~~iv~~L~-~--~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In 138 (236)
.++.++|||| ++.. .......++.+. + .+-+.++++++|+..=-.+++-. --.-..-+.+.|.+-
T Consensus 125 ~~ltLIDlPG---l~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l----~ia~~ld~~~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPG---ITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL----KLAKEVDPQGERTIG 197 (240)
T ss_pred CceEEEeCCC---ccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH----HHHHHHHHcCCcEEE
Confidence 4799999999 4321 122333333331 1 12334689999986422222211 011223347899999
Q ss_pred Eecccccccch
Q 026584 139 ILSKMDLVTNK 149 (236)
Q Consensus 139 VlsK~DLl~~~ 149 (236)
|+||+|.+++.
T Consensus 198 ViTK~D~~~~~ 208 (240)
T smart00053 198 VITKLDLMDEG 208 (240)
T ss_pred EEECCCCCCcc
Confidence 99999998654
No 255
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.083 Score=49.07 Aligned_cols=112 Identities=17% Similarity=0.355 Sum_probs=67.9
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecC-CCccchhhHHHHHHHHHHHHhhcCCCEEEEe-cccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS-QFITDVTKFISGCMASLSAMVQLELPHVNIL-SKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~-~~~~dp~~~is~~l~sls~m~~l~lP~InVl-sK~DLl 146 (236)
--++|+|| |-.-|--++.--.-.+ .++.++.+ ..|-.|.. .-=|+|+-+ +++.+|.|. ||+||+
T Consensus 88 VSfVDaPG------He~LMATMLsGAAlMD---gAlLvIaANEpcPQPQT--~EHl~AleI---igik~iiIvQNKIDlV 153 (415)
T COG5257 88 VSFVDAPG------HETLMATMLSGAALMD---GALLVIAANEPCPQPQT--REHLMALEI---IGIKNIIIVQNKIDLV 153 (415)
T ss_pred EEEeeCCc------hHHHHHHHhcchhhhc---ceEEEEecCCCCCCCch--HHHHHHHhh---hccceEEEEeccccee
Confidence 46899999 3222322322221122 35666776 34555543 222333443 688888774 999999
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
+++..+++|- .|.+++.--- -...+|+|+.-+-+|+.|+.+|.+-+.-
T Consensus 154 ~~E~AlE~y~------------------------qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 154 SRERALENYE------------------------QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred cHHHHHHHHH------------------------HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 8774444321 1222232222 2689999999999999999999997764
No 256
>PRK13796 GTPase YqeH; Provisional
Probab=95.53 E-value=0.12 Score=48.12 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=56.9
Q ss_pred HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHH
Q 026584 87 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSE 166 (236)
Q Consensus 87 ~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~ 166 (236)
..++++.+.. ...++++++|+.-.. .++... +.-.. -+.|.+.|+||+||+.+.... +
T Consensus 59 ~~~~l~~i~~--~~~lIv~VVD~~D~~--~s~~~~----L~~~~-~~kpviLViNK~DLl~~~~~~--------~----- 116 (365)
T PRK13796 59 FLKLLNGIGD--SDALVVNVVDIFDFN--GSWIPG----LHRFV-GNNPVLLVGNKADLLPKSVKK--------N----- 116 (365)
T ss_pred HHHHHHhhcc--cCcEEEEEEECccCC--CchhHH----HHHHh-CCCCEEEEEEchhhCCCccCH--------H-----
Confidence 4556666632 234789999975422 222222 11111 278999999999997532000 0
Q ss_pred hhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHHHHHh
Q 026584 167 LNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 167 l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+..++.+ .....+++ ..++++|+.++.+++.|+..|.+.
T Consensus 117 -------~i~~~l~---~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 117 -------KVKNWLR---QEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred -------HHHHHHH---HHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 0001111 11223343 368999999999999999999764
No 257
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=95.50 E-value=0.045 Score=53.64 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=40.0
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.++.++|||||.. |. ....+.+.. .. ++|+++|+..-..+. .. ++ ...-..++|.+.|+||+|+
T Consensus 80 ~~inliDTPG~~d-f~-----~~~~~~l~~--aD-~aIlVvDa~~gv~~~t~~----l~--~~~~~~~~PiivviNKiD~ 144 (527)
T TIGR00503 80 CLVNLLDTPGHED-FS-----EDTYRTLTA--VD-NCLMVIDAAKGVETRTRK----LM--EVTRLRDTPIFTFMNKLDR 144 (527)
T ss_pred eEEEEEECCChhh-HH-----HHHHHHHHh--CC-EEEEEEECCCCCCHHHHH----HH--HHHHhcCCCEEEEEECccc
Confidence 4578999999843 21 223344532 33 588999986522221 11 11 1222358999999999999
Q ss_pred cc
Q 026584 146 VT 147 (236)
Q Consensus 146 l~ 147 (236)
..
T Consensus 145 ~~ 146 (527)
T TIGR00503 145 DI 146 (527)
T ss_pred cC
Confidence 64
No 258
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=95.50 E-value=0.17 Score=43.24 Aligned_cols=127 Identities=19% Similarity=0.321 Sum_probs=71.1
Q ss_pred CCEEEEeCCCceeeeecc----chHHHHHHHHh--hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584 67 DDYLVFDCPGQIELFTHV----PVLRNFVDHLK--SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 140 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~----~~~~~iv~~L~--~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVl 140 (236)
....+||||| ++-.. ...+.|.+.+. ..+.+ +.++++....++.-...+-..+..+=-. ..---.|.|+
T Consensus 49 ~~v~VIDTPG---l~d~~~~~~~~~~~i~~~l~~~~~g~h-a~llVi~~~r~t~~~~~~l~~l~~~FG~-~~~k~~ivvf 123 (212)
T PF04548_consen 49 RQVTVIDTPG---LFDSDGSDEEIIREIKRCLSLCSPGPH-AFLLVIPLGRFTEEDREVLELLQEIFGE-EIWKHTIVVF 123 (212)
T ss_dssp EEEEEEE--S---SEETTEEHHHHHHHHHHHHHHTTT-ES-EEEEEEETTB-SHHHHHHHHHHHHHHCG-GGGGGEEEEE
T ss_pred eEEEEEeCCC---CCCCcccHHHHHHHHHHHHHhccCCCe-EEEEEEecCcchHHHHHHHHHHHHHccH-HHHhHhhHHh
Confidence 3578999999 55322 23445555553 24555 5788888876665555444333222000 0111266778
Q ss_pred cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeecc------CcccHHHHHHHHHH
Q 026584 141 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR------KESSIRYVLSQIDN 214 (236)
Q Consensus 141 sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~------d~~~i~~L~~~Id~ 214 (236)
|.+|-+... .+++|+.. .-+.++-++++..+- +++-++.+ +...+..|+..|++
T Consensus 124 T~~d~~~~~-~~~~~l~~------------------~~~~~l~~li~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~ 183 (212)
T PF04548_consen 124 THADELEDD-SLEDYLKK------------------ESNEALQELIEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEE 183 (212)
T ss_dssp EEGGGGTTT-THHHHHHH------------------HHHHHHHHHHHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccc-cHHHHHhc------------------cCchhHhHHhhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHH
Confidence 988877655 34443331 112345566666664 67777776 55788999999998
Q ss_pred hhcc
Q 026584 215 CIQW 218 (236)
Q Consensus 215 ~~~y 218 (236)
..+.
T Consensus 184 mv~~ 187 (212)
T PF04548_consen 184 MVQE 187 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 259
>COG1084 Predicted GTPase [General function prediction only]
Probab=95.48 E-value=0.041 Score=50.88 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=44.5
Q ss_pred CEEEEeCCCceeeee-ccchHH----HHHHHHhhCCCceEEEEeecCCC--ccchhhHHHHHHHHHHHHhhcCCCEEEEe
Q 026584 68 DYLVFDCPGQIELFT-HVPVLR----NFVDHLKSRNFNVCAVYLLDSQF--ITDVTKFISGCMASLSAMVQLELPHVNIL 140 (236)
Q Consensus 68 ~Yil~D~PGQiElf~-~~~~~~----~iv~~L~~~~~~~~~V~LiD~~~--~~dp~~~is~~l~sls~m~~l~lP~InVl 140 (236)
.|=+||||| |-- --..++ +-+..|+ ...-+++|++|.+- -.....-++.+ -.+--.+..|.+.|+
T Consensus 216 R~QvIDTPG---lLDRPl~ErN~IE~qAi~AL~--hl~~~IlF~~D~Se~cgy~lE~Q~~L~---~eIk~~f~~p~v~V~ 287 (346)
T COG1084 216 RIQVIDTPG---LLDRPLEERNEIERQAILALR--HLAGVILFLFDPSETCGYSLEEQISLL---EEIKELFKAPIVVVI 287 (346)
T ss_pred eEEEecCCc---ccCCChHHhcHHHHHHHHHHH--HhcCeEEEEEcCccccCCCHHHHHHHH---HHHHHhcCCCeEEEE
Confidence 467999999 431 111122 2334443 23447999999843 23344444322 345556789999999
Q ss_pred cccccccc
Q 026584 141 SKMDLVTN 148 (236)
Q Consensus 141 sK~DLl~~ 148 (236)
||+|+...
T Consensus 288 nK~D~~~~ 295 (346)
T COG1084 288 NKIDIADE 295 (346)
T ss_pred ecccccch
Confidence 99999843
No 260
>PRK01889 GTPase RsgA; Reviewed
Probab=95.20 E-value=0.14 Score=47.57 Aligned_cols=112 Identities=12% Similarity=0.177 Sum_probs=60.9
Q ss_pred CCEEEEeC--CCcee-eeeccchHHHH-------HHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE
Q 026584 67 DDYLVFDC--PGQIE-LFTHVPVLRNF-------VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 136 (236)
Q Consensus 67 ~~Yil~D~--PGQiE-lf~~~~~~~~i-------v~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~ 136 (236)
.++|++|+ ||.|+ ++--+..+.+= .+-+ -.|... ++.++++..--++. ++--+| ...-..++|.
T Consensus 72 GD~V~~~~~~~g~I~~i~pR~~~L~R~~~~~~~~~q~i-aANvD~-vliV~s~~p~~~~~-~ldr~L---~~a~~~~i~p 145 (356)
T PRK01889 72 GDWVLLDNEKKARIVRLLPRRSLFSRKAAGTRSEEQLI-AANVDT-VFIVCSLNHDFNLR-RIERYL---ALAWESGAEP 145 (356)
T ss_pred CcEEEEecCCceEEEEEECCCceEEcCCCCCCccceeE-EEeCCE-EEEEEecCCCCChh-HHHHHH---HHHHHcCCCE
Confidence 57999997 88885 33322222110 0000 124443 45556653222221 333332 2233468999
Q ss_pred EEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 137 VNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 137 InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
+.||||+||++... ... ..+..+ ......+++|+.++++++.|...+.
T Consensus 146 iIVLNK~DL~~~~~---~~~-----------------------~~~~~~---~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 146 VIVLTKADLCEDAE---EKI-----------------------AEVEAL---APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred EEEEEChhcCCCHH---HHH-----------------------HHHHHh---CCCCcEEEEECCCCccHHHHHHHhh
Confidence 99999999975320 000 001111 1125778899999999999998885
No 261
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.19 E-value=0.22 Score=43.89 Aligned_cols=55 Identities=11% Similarity=0.374 Sum_probs=37.8
Q ss_pred cCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHH
Q 026584 132 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 211 (236)
Q Consensus 132 l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~ 211 (236)
-++|.+.|+||+||.... +... +..+.....+ ..++.+|+++++++++|+..
T Consensus 66 ~~i~~vIV~NK~DL~~~~-~~~~--------------------------~~~~~~~~~g-~~v~~~SAktg~gi~eLf~~ 117 (245)
T TIGR00157 66 QNIEPIIVLNKIDLLDDE-DMEK--------------------------EQLDIYRNIG-YQVLMTSSKNQDGLKELIEA 117 (245)
T ss_pred CCCCEEEEEECcccCCCH-HHHH--------------------------HHHHHHHHCC-CeEEEEecCCchhHHHHHhh
Confidence 689999999999996433 1100 0001112333 57899999999999999988
Q ss_pred HHH
Q 026584 212 IDN 214 (236)
Q Consensus 212 Id~ 214 (236)
+-+
T Consensus 118 l~~ 120 (245)
T TIGR00157 118 LQN 120 (245)
T ss_pred hcC
Confidence 764
No 262
>PTZ00416 elongation factor 2; Provisional
Probab=95.17 E-value=0.052 Score=55.98 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=41.2
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
+.++||||..++ .......+... . ++++++|+.-=-.+..-- + +....+.++|.|.|+||+|+.
T Consensus 94 i~liDtPG~~~f------~~~~~~al~~~--D-~ailVvda~~g~~~~t~~---~--~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 94 INLIDSPGHVDF------SSEVTAALRVT--D-GALVVVDCVEGVCVQTET---V--LRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEcCCCHHhH------HHHHHHHHhcC--C-eEEEEEECCCCcCccHHH---H--HHHHHHcCCCEEEEEEChhhh
Confidence 689999997662 22344445333 3 578899986532222211 1 344455689999999999997
No 263
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.07 E-value=0.14 Score=40.66 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 88 RNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 88 ~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
+.+.+.+++. . ++++++|+.. ..+....+..++-. ..-+.|.+.|+||+||..+
T Consensus 3 ~~~~~~i~~a--D-~vl~ViD~~~p~~~~~~~l~~~l~~----~~~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 3 RQLWRVVERS--D-IVVQIVDARNPLLFRPPDLERYVKE----VDPRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHHHHhhC--C-EEEEEEEccCCcccCCHHHHHHHHh----ccCCCcEEEEEechhcCCH
Confidence 4455666443 3 5889999854 22233344333221 1137899999999999754
No 264
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.89 E-value=0.47 Score=39.70 Aligned_cols=129 Identities=15% Similarity=0.194 Sum_probs=73.8
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
..++||+||.|+- .+...- -.+.+ +++++.|......-....-.+...+.-...-+.|.+.|.||+||...
T Consensus 56 ~~~~Dt~gq~~~~-------~~~~~y-~~~~~-~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 56 LQLWDTAGQEEYR-------SLRPEY-YRGAN-GILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred EEeecCCCHHHHH-------HHHHHH-hcCCC-EEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 7889999999853 222111 23333 57778887765555555555555544443346999999999999865
Q ss_pred hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeecc--CcccHHHHHHHHHHhhcc
Q 026584 149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR--KESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~--d~~~i~~L~~~Id~~~~y 218 (236)
......+.. .+.. ..........+.....+... ++..++. ...++..++..+-+.+..
T Consensus 127 ~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 127 QSSSEEILN--------QLNR---EVVLLVLAPKAVLPEVANPA-LLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred hhHHHHHHh--------hhhc---CcchhhhHhHHhhhhhcccc-eeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 422111111 0000 00001111111222223334 8888998 999999999888776643
No 265
>PRK07560 elongation factor EF-2; Reviewed
Probab=94.84 E-value=0.26 Score=50.16 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=40.3
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
..++||||+.++ .......+... . ++|+++|+.---.+...- + +....+.++|.|.++||+|+..
T Consensus 89 i~liDtPG~~df------~~~~~~~l~~~--D-~avlVvda~~g~~~~t~~---~--~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 89 INLIDTPGHVDF------GGDVTRAMRAV--D-GAIVVVDAVEGVMPQTET---V--LRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred EEEEcCCCccCh------HHHHHHHHHhc--C-EEEEEEECCCCCCccHHH---H--HHHHHHcCCCeEEEEECchhhc
Confidence 478999998773 23344445333 3 578899986533332211 1 1122456889999999999864
No 266
>PRK12288 GTPase RsgA; Reviewed
Probab=94.71 E-value=0.32 Score=45.24 Aligned_cols=58 Identities=9% Similarity=0.206 Sum_probs=39.1
Q ss_pred hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHH
Q 026584 131 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 210 (236)
Q Consensus 131 ~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~ 210 (236)
..++|.+.|+||+||+... +... + .+..+..+..+ ..++++|+.++++++.|..
T Consensus 148 ~~~i~~VIVlNK~DL~~~~-~~~~------------~------------~~~~~~y~~~g-~~v~~vSA~tg~GideL~~ 201 (347)
T PRK12288 148 TLGIEPLIVLNKIDLLDDE-GRAF------------V------------NEQLDIYRNIG-YRVLMVSSHTGEGLEELEA 201 (347)
T ss_pred hcCCCEEEEEECccCCCcH-HHHH------------H------------HHHHHHHHhCC-CeEEEEeCCCCcCHHHHHH
Confidence 4689999999999997543 1100 0 00001112233 5789999999999999999
Q ss_pred HHHH
Q 026584 211 QIDN 214 (236)
Q Consensus 211 ~Id~ 214 (236)
.+..
T Consensus 202 ~L~~ 205 (347)
T PRK12288 202 ALTG 205 (347)
T ss_pred HHhh
Confidence 8865
No 267
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=94.70 E-value=0.086 Score=53.48 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=40.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchh-hHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~-~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
++.++||||+.. |. ......+...+ ++++++|+..--.+. ..+ +....+.++|.+.|+||+|..
T Consensus 87 ~i~liDTPG~~~-f~-----~~~~~al~~aD---~~llVvda~~g~~~~t~~~------~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 87 LINLIDTPGHVD-FG-----GDVTRAMRAVD---GAIVVVCAVEGVMPQTETV------LRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred EEEEEeCCCccc-cH-----HHHHHHHHhcC---EEEEEEecCCCCCccHHHH------HHHHHHcCCCEEEEEEChhcc
Confidence 469999999877 22 23344554333 578889985422222 111 122335689999999999997
Q ss_pred c
Q 026584 147 T 147 (236)
Q Consensus 147 ~ 147 (236)
.
T Consensus 152 ~ 152 (720)
T TIGR00490 152 I 152 (720)
T ss_pred c
Confidence 4
No 268
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=94.32 E-value=0.28 Score=50.67 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=40.6
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
=++||||+.++ .......++..+ +++.++|+.- +...+.-+ +......++|.|.++||+|..-
T Consensus 101 nliDtPGh~dF------~~e~~~al~~~D---~ailVvda~~Gv~~~t~~~------~~~~~~~~~p~i~~iNK~D~~~ 164 (843)
T PLN00116 101 NLIDSPGHVDF------SSEVTAALRITD---GALVVVDCIEGVCVQTETV------LRQALGERIRPVLTVNKMDRCF 164 (843)
T ss_pred EEECCCCHHHH------HHHHHHHHhhcC---EEEEEEECCCCCcccHHHH------HHHHHHCCCCEEEEEECCcccc
Confidence 48999997553 334455553333 5788899863 22222211 3445667999999999999974
No 269
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.28 E-value=0.6 Score=46.16 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=41.5
Q ss_pred cCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC-eeEEEeeccCcccHHHHHH
Q 026584 132 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLS 210 (236)
Q Consensus 132 l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l-v~f~pls~~d~~~i~~L~~ 210 (236)
-+.|.|.++||||.-.. +++....+|-... =.++++|- ++.+|+|+.+++++..|..
T Consensus 252 A~VpiVvAinKiDkp~a----------~pekv~~eL~~~g------------i~~E~~GGdVQvipiSAl~g~nl~~L~e 309 (683)
T KOG1145|consen 252 ANVPIVVAINKIDKPGA----------NPEKVKRELLSQG------------IVVEDLGGDVQVIPISALTGENLDLLEE 309 (683)
T ss_pred cCCCEEEEEeccCCCCC----------CHHHHHHHHHHcC------------ccHHHcCCceeEEEeecccCCChHHHHH
Confidence 59999999999995321 1111111111111 24789988 9999999999999999987
Q ss_pred HHH
Q 026584 211 QID 213 (236)
Q Consensus 211 ~Id 213 (236)
+|=
T Consensus 310 ail 312 (683)
T KOG1145|consen 310 AIL 312 (683)
T ss_pred HHH
Confidence 763
No 270
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=93.51 E-value=0.21 Score=40.89 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=39.6
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHH--HHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVD--HLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~--~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
+.+++++||||=.+. ...+..++. .+.. .... .+++++|+..+....+-. -...-.++.--+.|+||
T Consensus 86 ~~d~I~IEt~G~~~p---~~~~~~~~~~~~~~~~~~~d-~vv~vvDa~~~~~~~~~~------~~~~~Qi~~ad~ivlnk 155 (158)
T cd03112 86 AFDRIVIETTGLADP---GPVAQTFFMDEELAERYLLD-GVITLVDAKHANQHLDQQ------TEAQSQIAFADRILLNK 155 (158)
T ss_pred CCCEEEEECCCcCCH---HHHHHHHhhchhhhcceeec-cEEEEEEhhHhHHHhhcc------HHHHHHHHHCCEEEEec
Confidence 568999999994432 223333221 1221 2233 478999986554322111 11234466677789999
Q ss_pred ccc
Q 026584 143 MDL 145 (236)
Q Consensus 143 ~DL 145 (236)
+||
T Consensus 156 ~dl 158 (158)
T cd03112 156 TDL 158 (158)
T ss_pred ccC
Confidence 996
No 271
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=93.39 E-value=0.89 Score=38.39 Aligned_cols=110 Identities=13% Similarity=0.214 Sum_probs=60.6
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.+-+.|||||-+... ++ .... + +.. ++++++|.. +...|- ..++..+.... =.+|.+.|.||+|+
T Consensus 59 ~i~~~Dt~g~~~~~~----~~--~~~~-~-~~~-~~i~v~d~~---~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl 125 (215)
T PTZ00132 59 CFNVWDTAGQEKFGG----LR--DGYY-I-KGQ-CAIIMFDVT---SRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDV 125 (215)
T ss_pred EEEEEECCCchhhhh----hh--HHHh-c-cCC-EEEEEEECc---CHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccC
Confidence 356889999854311 11 1112 1 222 567788864 333331 22222222111 36899999999998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
.... .. . . ..++....+ ..|+++|+.++.+++..+..|-+++-..
T Consensus 126 ~~~~--~~---~----------------~-------~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 126 KDRQ--VK---A----------------R-------QITFHRKKN-LQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred cccc--CC---H----------------H-------HHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 5322 00 0 0 001112233 4788999999999999888888776544
No 272
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=93.17 E-value=0.77 Score=39.12 Aligned_cols=100 Identities=11% Similarity=0.227 Sum_probs=59.4
Q ss_pred CCCEEEEeCCC--ceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 66 DDDYLVFDCPG--QIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 66 ~~~Yil~D~PG--QiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
+.+++++.|-| +.+.+. ..+. + .+|-++|+....+-... .. -.+...-+.|+||+
T Consensus 91 ~~D~iiIEt~G~~l~~~~~---------~~l~--~---~~i~vvD~~~~~~~~~~-------~~--~qi~~ad~~~~~k~ 147 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFS---------PELA--D---LTIFVIDVAAGDKIPRK-------GG--PGITRSDLLVINKI 147 (199)
T ss_pred CCCEEEEECCCCCcccccc---------hhhh--C---cEEEEEEcchhhhhhhh-------hH--hHhhhccEEEEEhh
Confidence 46899999999 444331 1121 2 25667888654442111 01 13344568999999
Q ss_pred ccccch-hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc-CCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 144 DLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 144 DLl~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~-~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
|+.+.. .+++. + . +.+..+ .-..++++|+++++++++++..|-+.
T Consensus 148 d~~~~~~~~~~~--------~---------------~----~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 148 DLAPMVGADLGV--------M---------------E----RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred hccccccccHHH--------H---------------H----HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 997421 01111 0 0 111121 23789999999999999999998764
No 273
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=93.13 E-value=0.12 Score=43.09 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=31.5
Q ss_pred EEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhc
Q 026584 102 CAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYL 156 (236)
Q Consensus 102 ~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l 156 (236)
++++++|+.. +......+-..+ ...+.+.|+|.|+||+||++.. .+..|+
T Consensus 2 vVl~VvDar~p~~~~~~~i~~~~----~l~~~~kp~IlVlNK~DL~~~~-~l~~~~ 52 (172)
T cd04178 2 VILEVLDARDPLGCRCPQVEEAV----LQAGGNKKLVLVLNKIDLVPKE-NVEKWL 52 (172)
T ss_pred EEEEEEECCCCCCCCCHHHHHHH----HhccCCCCEEEEEehhhcCCHH-HHHHHH
Confidence 5899999865 333333332221 1223578999999999998755 444443
No 274
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=92.92 E-value=0.69 Score=42.26 Aligned_cols=133 Identities=15% Similarity=0.288 Sum_probs=73.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccc------hhhHHHHHHHHHHHHhh----cCCCEE
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD------VTKFISGCMASLSAMVQ----LELPHV 137 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~d------p~~~is~~l~sls~m~~----l~lP~I 137 (236)
.+-++|+.||-. .| ++-..... +.. +++|++|+.-... ...-+.-.+..+..+++ -+.|.+
T Consensus 162 ~~~~~DvgGq~~---~R---~kW~~~f~--~v~-~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pil 232 (317)
T cd00066 162 KFRMFDVGGQRS---ER---KKWIHCFE--DVT-AIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSII 232 (317)
T ss_pred EEEEECCCCCcc---cc---hhHHHHhC--CCC-EEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEE
Confidence 467899999844 11 22334442 444 6899999864311 12334444444444444 378999
Q ss_pred EEecccccccch---hHhhhhccc--c-HHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHH
Q 026584 138 NILSKMDLVTNK---KEIEDYLNP--E-SQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 211 (236)
Q Consensus 138 nVlsK~DLl~~~---~~l~~~l~~--~-~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~ 211 (236)
.++||.|++..+ ..+..+... + .... ++...-...+|..+.+. .-..+..+..++.|.+++..++..
T Consensus 233 l~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~-~~~~~~i~~~F~~~~~~------~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 233 LFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDY-EEAAKFIRKKFLDLNRN------PNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred EEccChHHHHHhhcCCCccccCCCCCCCCCCH-HHHHHHHHHHHHHhhcC------CCCeEEEEeccccchHHHHHHHHH
Confidence 999999998643 112223221 0 1111 11111111233333221 112377788999999999999988
Q ss_pred HHHhh
Q 026584 212 IDNCI 216 (236)
Q Consensus 212 Id~~~ 216 (236)
+-..+
T Consensus 306 v~~~i 310 (317)
T cd00066 306 VKDII 310 (317)
T ss_pred HHHHH
Confidence 76643
No 275
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=92.88 E-value=0.56 Score=42.22 Aligned_cols=83 Identities=11% Similarity=0.109 Sum_probs=49.7
Q ss_pred CCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHH
Q 026584 98 NFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFA 176 (236)
Q Consensus 98 ~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~ 176 (236)
+.. ++++++|+..-. ++ ..+.-++..+ ...+.|.+.|+||+||.... +... ..
T Consensus 78 nvD-~vllV~d~~~p~~s~-~~ldr~L~~~---~~~~ip~iIVlNK~DL~~~~-~~~~--------------------~~ 131 (287)
T cd01854 78 NVD-QLVIVVSLNEPFFNP-RLLDRYLVAA---EAAGIEPVIVLTKADLLDDE-EEEL--------------------EL 131 (287)
T ss_pred eCC-EEEEEEEcCCCCCCH-HHHHHHHHHH---HHcCCCEEEEEEHHHCCChH-HHHH--------------------HH
Confidence 344 367778875432 22 3444443322 23589999999999996532 1000 00
Q ss_pred HHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 177 KLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 177 ~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
......+ ..++++|+.++.+++.|...+..
T Consensus 132 -------~~~~~~g-~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 132 -------VEALALG-YPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred -------HHHHhCC-CeEEEEECCCCccHHHHHhhhcc
Confidence 0001122 57889999999999999887764
No 276
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=92.73 E-value=1.2 Score=42.62 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=77.0
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHh--hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLK--SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~--~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
---++||=| |-++++.-++-|- +.+|-+.+|=-=|......... +.+|+-+++|.+.|++|||+
T Consensus 202 lVsfVDtvG------HEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH--------Lgi~~a~~lPviVvvTK~D~ 267 (527)
T COG5258 202 LVSFVDTVG------HEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH--------LGIALAMELPVIVVVTKIDM 267 (527)
T ss_pred EEEEEecCC------ccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh--------hhhhhhhcCCEEEEEEeccc
Confidence 357899999 7788888888883 5677665555444444444444 56777899999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHH--HHHHhhcc-CCeeEEEeeccCcccHHHHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKS--LIELVDEY-SMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~--l~~li~d~-~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
..+. .+....+ +...++...+. .+-..+..... -+..+..- +.+..+-.|+-++++++-|....-
T Consensus 268 ~~dd-r~~~v~~-ei~~~Lk~v~R-ip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 268 VPDD-RFQGVVE-EISALLKRVGR-IPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred CcHH-HHHHHHH-HHHHHHHHhcc-cceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 9765 3333222 23333332221 00000111111 01222222 357889999999999987766543
No 277
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=92.66 E-value=0.39 Score=33.44 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=24.2
Q ss_pred CCceEEEEeecCCC-cc-chhhHHHHHHHHHHHHhhc-CCCEEEEecccc
Q 026584 98 NFNVCAVYLLDSQF-IT-DVTKFISGCMASLSAMVQL-ELPHVNILSKMD 144 (236)
Q Consensus 98 ~~~~~~V~LiD~~~-~~-dp~~~is~~l~sls~m~~l-~lP~InVlsK~D 144 (236)
..+-+++|++|.+- |. ....-++ +--++.-++ +.|.+.|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~---L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLS---LFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHH---HHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHH---HHHHHHHHcCCCCEEEEEeccC
Confidence 34568999999843 22 2333332 224555567 899999999998
No 278
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=92.56 E-value=0.97 Score=42.45 Aligned_cols=119 Identities=17% Similarity=0.306 Sum_probs=77.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHh-----------hCCC-------c-eEEEEeecC-CCccchhhHHHHHHHHHH
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLK-----------SRNF-------N-VCAVYLLDS-QFITDVTKFISGCMASLS 127 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~-----------~~~~-------~-~~~V~LiD~-~~~~dp~~~is~~l~sls 127 (236)
..-++||||--+....+.+..-+++++. +... | =|++|++-. .+...|-+. -
T Consensus 83 ~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI--------e 154 (373)
T COG5019 83 NLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI--------E 154 (373)
T ss_pred EEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH--------H
Confidence 3689999999998877777777776652 1111 1 256666664 445555553 3
Q ss_pred HHhhc--CCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcc-c
Q 026584 128 AMVQL--ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-S 204 (236)
Q Consensus 128 ~m~~l--~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~-~ 204 (236)
+|-++ .+-.|+|+.|+|.+... ++..+. +.|.+.++.++.--|.|.+..+.+ .
T Consensus 155 ~Mk~ls~~vNlIPVI~KaD~lT~~-El~~~K-----------------------~~I~~~i~~~nI~vf~pyd~e~~~~e 210 (373)
T COG5019 155 AMKRLSKRVNLIPVIAKADTLTDD-ELAEFK-----------------------ERIREDLEQYNIPVFDPYDPEDDEDE 210 (373)
T ss_pred HHHHHhcccCeeeeeeccccCCHH-HHHHHH-----------------------HHHHHHHHHhCCceeCCCCccccchh
Confidence 34444 67789999999998766 443322 234466777887555587777653 6
Q ss_pred HHHHHHHHHHhhcc
Q 026584 205 IRYVLSQIDNCIQW 218 (236)
Q Consensus 205 i~~L~~~Id~~~~y 218 (236)
.-+.-+.+..+++|
T Consensus 211 ~~e~~~~l~~~~PF 224 (373)
T COG5019 211 SLEENQDLRSLIPF 224 (373)
T ss_pred hHHHHHHHhhcCCe
Confidence 66667777777776
No 279
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.53 E-value=1.4 Score=38.08 Aligned_cols=110 Identities=15% Similarity=0.291 Sum_probs=67.5
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
-=|-||-|| |=|. .|+..- -++.+ -+|++.|... .++|= -.|+.-.--...-++|.+.|-||||+.
T Consensus 60 lQIWDTAGQ-ERFr------tit~sy-YR~ah-Gii~vyDiT~---~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 60 LQIWDTAGQ-ERFR------TITSSY-YRGAH-GIIFVYDITK---QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred EEeeecccc-HHHh------hhhHhh-ccCCC-eEEEEEEccc---HHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 456799999 4333 222211 13444 4677788543 34332 234434444444578999999999997
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
... ... . + . -.++.+..++-.|.+.|+++..++++.+..+.+.+
T Consensus 128 ~~~-~v~---~-~-----------~----------a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 128 EKR-VVS---T-E-----------E----------AQEFADELGIPIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred hhe-ecC---H-H-----------H----------HHHHHHhcCCcceeecccCCccCHHHHHHHHHHHH
Confidence 543 110 0 0 0 01334556665699999999999999999998854
No 280
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=92.23 E-value=0.75 Score=42.36 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHhcc-----------cCCCCEEEEeCCCceeeeeccchHHHHHHHH-hhCCCceEEEE
Q 026584 38 PNGGLIYCMEHLEDNLDDWLAEELDN-----------YLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVY 105 (236)
Q Consensus 38 PNGalv~~me~l~~n~~~wl~~~i~~-----------~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L-~~~~~~~~~V~ 105 (236)
||-|...-++-+...--.+.. .... .......++||||..+..........+++.. .+.+.. +++|
T Consensus 47 tGVGKSSliNsIlG~~v~~vs-~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~D-vVLy 124 (313)
T TIGR00991 47 GGVGKSSTVNSIIGERIATVS-AFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTID-VLLY 124 (313)
T ss_pred CCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCC-EEEE
Confidence 677777777777632101111 1100 0123578999999666422122222233322 122444 4677
Q ss_pred e--ecCCCccchhhHHHHHHHH-HHHHhhcCCCEEEEecccccccch-hHhhhhccccHHH
Q 026584 106 L--LDSQFITDVTKFISGCMAS-LSAMVQLELPHVNILSKMDLVTNK-KEIEDYLNPESQF 162 (236)
Q Consensus 106 L--iD~~~~~dp~~~is~~l~s-ls~m~~l~lP~InVlsK~DLl~~~-~~l~~~l~~~~~~ 162 (236)
+ +|+.....-..-+-..+.. +. -+.--+.|.|+|++|.+..+ ..++.|+......
T Consensus 125 V~rLD~~R~~~~DkqlLk~Iqe~FG--~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~~~~~ 183 (313)
T TIGR00991 125 VDRLDAYRVDTLDGQVIRAITDSFG--KDIWRKSLVVLTHAQFSPPDGLEYNDFFSKRSEA 183 (313)
T ss_pred EeccCcccCCHHHHHHHHHHHHHhh--hhhhccEEEEEECCccCCCCCCCHHHHHHhcHHH
Confidence 6 4554443332222222211 11 11235789999999988543 2466666643333
No 281
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=92.09 E-value=2.8 Score=34.25 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=35.3
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc--cchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~--~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
+.+|+|+||||.+. + .....+...+ . ++..+..... .+....+ ...-+.+.|+..|+||+
T Consensus 92 ~~d~viiDtpp~~~-----~---~~~~~l~~aD--~-vliv~~~~~~~~~~~~~~~-------~~l~~~~~~~~vV~N~~ 153 (179)
T cd03110 92 GAELIIIDGPPGIG-----C---PVIASLTGAD--A-ALLVTEPTPSGLHDLERAV-------ELVRHFGIPVGVVINKY 153 (179)
T ss_pred CCCEEEEECcCCCc-----H---HHHHHHHcCC--E-EEEEecCCcccHHHHHHHH-------HHHHHcCCCEEEEEeCC
Confidence 56899999998653 1 2233343333 2 4444444432 2222222 22335688999999999
Q ss_pred ccc
Q 026584 144 DLV 146 (236)
Q Consensus 144 DLl 146 (236)
|.-
T Consensus 154 ~~~ 156 (179)
T cd03110 154 DLN 156 (179)
T ss_pred CCC
Confidence 863
No 282
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=91.99 E-value=0.48 Score=43.95 Aligned_cols=64 Identities=20% Similarity=0.373 Sum_probs=46.2
Q ss_pred cCCCEEEEe-cccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHH
Q 026584 132 LELPHVNIL-SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYV 208 (236)
Q Consensus 132 l~lP~InVl-sK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L 208 (236)
+.+.||.++ ||+||++.+..+++ +++|..++..... ...+|+|++=+.+++.+
T Consensus 177 M~LkhiiilQNKiDli~e~~A~eq------------------------~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v 232 (466)
T KOG0466|consen 177 MKLKHIIILQNKIDLIKESQALEQ------------------------HEQIQKFIQGTVAEGAPIIPISAQLKYNIDVV 232 (466)
T ss_pred hhhceEEEEechhhhhhHHHHHHH------------------------HHHHHHHHhccccCCCceeeehhhhccChHHH
Confidence 578899886 99999976532221 2233344444433 58999999999999999
Q ss_pred HHHHHHhhccc
Q 026584 209 LSQIDNCIQWG 219 (236)
Q Consensus 209 ~~~Id~~~~y~ 219 (236)
...|=+.++.-
T Consensus 233 ~eyivkkIPvP 243 (466)
T KOG0466|consen 233 CEYIVKKIPVP 243 (466)
T ss_pred HHHHHhcCCCC
Confidence 99998877653
No 283
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=91.51 E-value=0.28 Score=44.66 Aligned_cols=57 Identities=11% Similarity=0.193 Sum_probs=39.3
Q ss_pred cCCCEEEEecccccccch-hHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHH
Q 026584 132 LELPHVNILSKMDLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 210 (236)
Q Consensus 132 l~lP~InVlsK~DLl~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~ 210 (236)
+..+.+.|+||+||++.. .+++.++. .+-.-.....++|+|++++++++.|+.
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~--------------------------~lr~lnp~a~I~~vSA~tGeGld~L~~ 282 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIA--------------------------CAREVNPEIEIILISATSGEGMDQWLN 282 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHH--------------------------HHHhhCCCCcEEEEECCCCCCHHHHHH
Confidence 478899999999998532 11211111 111112448899999999999999999
Q ss_pred HHHH
Q 026584 211 QIDN 214 (236)
Q Consensus 211 ~Id~ 214 (236)
.+.+
T Consensus 283 ~L~~ 286 (290)
T PRK10463 283 WLET 286 (290)
T ss_pred HHHH
Confidence 9865
No 284
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.36 E-value=0.41 Score=36.02 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=36.4
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHH--HHHHHHHHHh--hcCCCEEEEecccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS--GCMASLSAMV--QLELPHVNILSKMD 144 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is--~~l~sls~m~--~l~lP~InVlsK~D 144 (236)
+.+.|++||.+....+... +++.+ +++++.|+. ++.++-. .++.-+...- .-.+|.|.|.||.|
T Consensus 52 ~~~~d~~g~~~~~~~~~~~------~~~~d---~~ilv~D~s---~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQFF------LKKAD---AVILVYDLS---DPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHHH------HHHSC---EEEEEEECC---GHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEecCccceecccccch------hhcCc---EEEEEEcCC---ChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 4577999997655433322 43332 578888855 5554433 2221222222 23599999999998
No 285
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=90.92 E-value=1 Score=36.51 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
..+|+|+|||| .+... ...+...+ .++|-.... ..|..-++ --..++.-++.|+||+|
T Consensus 91 ~~D~iiIDtaG-----~~~~~----~~~~~~Ad--~~ivv~tpe--~~D~y~~~--------k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVG-----VGQSE----VDIASMAD--TTVVVMAPG--AGDDIQAI--------KAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCc-----cChhh----hhHHHhCC--EEEEEECCC--chhHHHHh--------hhhHhhhcCEEEEeCCC
Confidence 56899999999 12222 22333233 333332322 33332222 22336778899999997
No 286
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=90.80 E-value=0.64 Score=37.29 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
.....|+||||--+....+. ..+.+++ .... +++|++++............ ....-...-.++.|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~--~~~~~~~--~~~d-~vi~V~~~~~~~~~~~~~~l----~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHT--EITEEYL--PKAD-VVIFVVDANQDLTESDMEFL----KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTS--HHHHHHH--STTE-EEEEEEETTSTGGGHHHHHH----HHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhH--HHHHHhh--ccCC-EEEEEeccCcccchHHHHHH----HHHhcCCCCeEEEEEcCC
Confidence 34689999999544332222 3334444 2333 68999999774443322211 222333455599999985
No 287
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.63 E-value=2.5 Score=38.16 Aligned_cols=124 Identities=16% Similarity=0.241 Sum_probs=70.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHH---HHHHHHHh--hcCCCEEEEecc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC---MASLSAMV--QLELPHVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~---l~sls~m~--~l~lP~InVlsK 142 (236)
++=+.|+|||+-.|-.+--..++.+. -+ +.+|++||+ ..|+-++ -+...--+ +-.+-.=..+-|
T Consensus 76 nf~v~dfPGQ~~~Fd~s~D~e~iF~~---~g---ALifvIDaQ-----ddy~eala~L~~~v~raykvNp~in~EVfiHK 144 (347)
T KOG3887|consen 76 NFQVWDFPGQMDFFDPSFDYEMIFRG---VG---ALIFVIDAQ-----DDYMEALARLHMTVERAYKVNPNINFEVFIHK 144 (347)
T ss_pred ceEEeecCCccccCCCccCHHHHHhc---cC---eEEEEEech-----HHHHHHHHHHHHHhhheeecCCCceEEEEEEe
Confidence 57899999999999544333344332 22 479999987 3444322 11111111 112222223789
Q ss_pred cccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 143 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 143 ~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
.|=++.+..++. ....+.+-+..++++..+---++|..-|+-|..-.+..-+.++|.++-
T Consensus 145 vDGLsdd~kiet----------------qrdI~qr~~d~l~d~gle~v~vsf~LTSIyDHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 145 VDGLSDDFKIET----------------QRDIHQRTNDELADAGLEKVQVSFYLTSIYDHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred ccCCchhhhhhh----------------HHHHHHHhhHHHHhhhhccceEEEEEeeecchHHHHHHHHHHHHHhhh
Confidence 998876522211 001344455555555444333888888888887777777777776543
No 288
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=90.52 E-value=0.26 Score=39.90 Aligned_cols=12 Identities=50% Similarity=1.043 Sum_probs=10.4
Q ss_pred CEEEEeCCCcee
Q 026584 68 DYLVFDCPGQIE 79 (236)
Q Consensus 68 ~Yil~D~PGQiE 79 (236)
+|+||||||...
T Consensus 64 d~viiD~p~~~~ 75 (179)
T cd02036 64 DYILIDSPAGIE 75 (179)
T ss_pred CEEEEECCCCCc
Confidence 799999999754
No 289
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=90.23 E-value=4.8 Score=34.35 Aligned_cols=64 Identities=17% Similarity=0.325 Sum_probs=32.7
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~D 144 (236)
..+|+|+|||+-+.. .....|...+. ++..+++...+ -.. .+-.....-+.+.+. ..|+||++
T Consensus 108 ~yD~VIiD~p~~~~~--------~~~~~l~~ad~---vliv~~~~~~s-~~~----~~~~~~~~~~~~~~~~~vv~N~~~ 171 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--------DAVTALAAADE---LLLVVNPEISS-ITD----ALKTKIVAEKLGTAILGVVLNRVT 171 (251)
T ss_pred hCCEEEEeCCCccCH--------HHHHHHHhCCe---EEEEECCCCch-HHH----HHHHHHHHHhcCCceEEEEEECCC
Confidence 458999999997642 22233433332 44445544322 111 111122233457775 46789987
Q ss_pred c
Q 026584 145 L 145 (236)
Q Consensus 145 L 145 (236)
-
T Consensus 172 ~ 172 (251)
T TIGR01969 172 R 172 (251)
T ss_pred c
Confidence 5
No 290
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=89.20 E-value=2.3 Score=36.36 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=13.9
Q ss_pred CCCEEEEecccccccc
Q 026584 133 ELPHVNILSKMDLVTN 148 (236)
Q Consensus 133 ~lP~InVlsK~DLl~~ 148 (236)
.+|.|.|-||+||...
T Consensus 129 ~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 129 QIPLLVIGTKLDQIPE 144 (202)
T ss_pred CceEEEEEECccchhh
Confidence 6899999999999753
No 291
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=89.20 E-value=0.77 Score=38.93 Aligned_cols=57 Identities=11% Similarity=0.250 Sum_probs=38.3
Q ss_pred cCCCEEEEecccccccchh-HhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHH
Q 026584 132 LELPHVNILSKMDLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 210 (236)
Q Consensus 132 l~lP~InVlsK~DLl~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~ 210 (236)
.+.|.+.|+||+|+.+... +... +...+.++ .....++++|+.++++++.++.
T Consensus 147 ~~~a~iiv~NK~Dl~~~~~~~~~~-----------------------~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~ 200 (207)
T TIGR00073 147 FKEADLIVINKADLAEAVGFDVEK-----------------------MKADAKKI---NPEAEIILMSLKTGEGLDEWLE 200 (207)
T ss_pred HhhCCEEEEEHHHccccchhhHHH-----------------------HHHHHHHh---CCCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999975320 1111 01111111 1347899999999999999999
Q ss_pred HHHH
Q 026584 211 QIDN 214 (236)
Q Consensus 211 ~Id~ 214 (236)
.+.+
T Consensus 201 ~i~~ 204 (207)
T TIGR00073 201 FLEG 204 (207)
T ss_pred HHHH
Confidence 9865
No 292
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=88.86 E-value=1 Score=45.71 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=42.3
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..+=||||||.+. |+ ...-+.|+-.+. +|.++|+.-=-.|..-- . .-...+.++|.|.++||+|.+
T Consensus 76 ~~iNlIDTPGHVD-Ft-----~EV~rslrvlDg---avvVvdaveGV~~QTEt-v----~rqa~~~~vp~i~fiNKmDR~ 141 (697)
T COG0480 76 YRINLIDTPGHVD-FT-----IEVERSLRVLDG---AVVVVDAVEGVEPQTET-V----WRQADKYGVPRILFVNKMDRL 141 (697)
T ss_pred eEEEEeCCCCccc-cH-----HHHHHHHHhhcc---eEEEEECCCCeeecHHH-H----HHHHhhcCCCeEEEEECcccc
Confidence 3567999999777 32 334444532342 55566775433333321 1 234456899999999999998
Q ss_pred cc
Q 026584 147 TN 148 (236)
Q Consensus 147 ~~ 148 (236)
..
T Consensus 142 ~a 143 (697)
T COG0480 142 GA 143 (697)
T ss_pred cc
Confidence 64
No 293
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=88.54 E-value=4.1 Score=39.12 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHh---hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK---SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~---~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
..++|||||||.. |.+ ..+++.|. +......+++++|+..-.+...... .+-+.--+.-.|+||
T Consensus 182 ~~DvViIDTaGr~----~~d--~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~-------~F~~~~~~~g~IlTK 248 (429)
T TIGR01425 182 NFDIIIVDTSGRH----KQE--DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK-------AFKDSVDVGSVIITK 248 (429)
T ss_pred CCCEEEEECCCCC----cch--HHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH-------HHHhccCCcEEEEEC
Confidence 4589999999942 221 22333342 2222345788999865433322221 111112366778999
Q ss_pred cccccch
Q 026584 143 MDLVTNK 149 (236)
Q Consensus 143 ~DLl~~~ 149 (236)
.|-..+.
T Consensus 249 lD~~arg 255 (429)
T TIGR01425 249 LDGHAKG 255 (429)
T ss_pred ccCCCCc
Confidence 9976543
No 294
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=88.49 E-value=1.9 Score=38.18 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=39.0
Q ss_pred CEEEEeCCCceeee----eccchHHHHHHHHhhCCCceEEEEe--ecCCCccchhhHHHHHHHHHHHHh--hcCCCEEEE
Q 026584 68 DYLVFDCPGQIELF----THVPVLRNFVDHLKSRNFNVCAVYL--LDSQFITDVTKFISGCMASLSAMV--QLELPHVNI 139 (236)
Q Consensus 68 ~Yil~D~PGQiElf----~~~~~~~~iv~~L~~~~~~~~~V~L--iD~~~~~dp~~~is~~l~sls~m~--~l~lP~InV 139 (236)
.+.++||||-.|-- .....+..+-+.+++.+.. +++|+ +|+........-+-.. +.-.+ ++-.+.+.|
T Consensus 80 ~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~id-vIL~V~rlD~~r~~~~d~~llk~---I~e~fG~~i~~~~ivV 155 (249)
T cd01853 80 KLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPD-VVLYVDRLDMYRRDYLDLPLLRA---ITDSFGPSIWRNAIVV 155 (249)
T ss_pred EEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCC-EEEEEEcCCCCCCCHHHHHHHHH---HHHHhChhhHhCEEEE
Confidence 57899999944421 1111222233344333444 45565 3544433332222111 11111 222578999
Q ss_pred ecccccccch
Q 026584 140 LSKMDLVTNK 149 (236)
Q Consensus 140 lsK~DLl~~~ 149 (236)
+||+|...+.
T Consensus 156 ~T~~d~~~p~ 165 (249)
T cd01853 156 LTHAASSPPD 165 (249)
T ss_pred EeCCccCCCC
Confidence 9999998654
No 295
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.04 E-value=2.8 Score=39.51 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=42.7
Q ss_pred cCCCCEEEEeCCCceeeeeccch-HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCC--CEEEEe
Q 026584 64 YLDDDYLVFDCPGQIELFTHVPV-LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL--PHVNIL 140 (236)
Q Consensus 64 ~~~~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~l--P~InVl 140 (236)
+.+.+++|||||| +.+++. ....+..|.......-.++++++..-.+.-.-+...+....-..+.-+ +.=.|+
T Consensus 213 l~~~DlVLIDTaG----~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~ 288 (374)
T PRK14722 213 LRNKHMVLIDTIG----MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCIL 288 (374)
T ss_pred hcCCCEEEEcCCC----CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEE
Confidence 3356899999999 443332 334445553323333457778877644332222111111111111111 234679
Q ss_pred cccccccchhHh
Q 026584 141 SKMDLVTNKKEI 152 (236)
Q Consensus 141 sK~DLl~~~~~l 152 (236)
||.|=..+.+.+
T Consensus 289 TKlDEt~~~G~~ 300 (374)
T PRK14722 289 TKLDEASNLGGV 300 (374)
T ss_pred eccccCCCccHH
Confidence 999987665443
No 296
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=87.92 E-value=1.9 Score=36.72 Aligned_cols=112 Identities=15% Similarity=0.239 Sum_probs=58.3
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecC-CCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS-QFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~-~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
..-|.||+||-|.=. ++. ..+ +.+.-.+.||=+++ ..+..-..+...+ +-+.-+-.+|.|.|-||+||.
T Consensus 52 ~l~ilDt~g~~~~~~----~~~--~~~-~~~~gF~lVysitd~~SF~~~~~l~~~I---~r~~~~~~~PivlVGNK~Dl~ 121 (196)
T KOG0395|consen 52 MLEILDTAGQEEFSA----MRD--LYI-RNGDGFLLVYSITDRSSFEEAKQLREQI---LRVKGRDDVPIILVGNKCDLE 121 (196)
T ss_pred EEEEEcCCCcccChH----HHH--Hhh-ccCcEEEEEEECCCHHHHHHHHHHHHHH---HHhhCcCCCCEEEEEEcccch
Confidence 457999999877322 111 112 22223455653333 2222222322221 222233568999999999996
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhh
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 216 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~ 216 (236)
... +. . .+.+ ++ +...++ ..|+-.|++...++++++..+=+..
T Consensus 122 ~~R-~V----~-----------~eeg-------~~---la~~~~-~~f~E~Sak~~~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 122 RER-QV----S-----------EEEG-------KA---LARSWG-CAFIETSAKLNYNVDEVFYELVREI 164 (196)
T ss_pred hcc-cc----C-----------HHHH-------HH---HHHhcC-CcEEEeeccCCcCHHHHHHHHHHHH
Confidence 532 11 0 0000 01 122333 4488888888888887777665543
No 297
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=87.41 E-value=4.6 Score=32.78 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=39.0
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
..+++|+||||-.-. ....+..+ ..+......-.+++++|+.. +.+-+. ....+ .-+.+ ..-.|+||+|.
T Consensus 82 ~~d~viiDt~g~~~~--~~~~l~~l-~~l~~~~~~~~~~lVv~~~~---~~~~~~-~~~~~--~~~~~-~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQI--DENLMEEL-KKIKRVVKPDEVLLVVDAMT---GQDAVN-QAKAF--NEALG-ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchh--hHHHHHHH-HHHHhhcCCCeEEEEEECCC---ChHHHH-HHHHH--HhhCC-CCEEEEECCcC
Confidence 557999999995432 22223333 22222112445788899742 222222 11222 12234 36677899998
Q ss_pred ccch
Q 026584 146 VTNK 149 (236)
Q Consensus 146 l~~~ 149 (236)
..+.
T Consensus 152 ~~~~ 155 (173)
T cd03115 152 DARG 155 (173)
T ss_pred CCCc
Confidence 7654
No 298
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=87.36 E-value=10 Score=35.08 Aligned_cols=179 Identities=15% Similarity=0.179 Sum_probs=92.0
Q ss_pred ccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHH------------Hhcc---------cCCCCEEEEeCCCce
Q 026584 20 DIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAE------------ELDN---------YLDDDYLVFDCPGQI 78 (236)
Q Consensus 20 DIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~------------~i~~---------~~~~~Yil~D~PGQi 78 (236)
+|+.+-.-..|.+-+.-..+=.+.-+..|+.++++..... .... +..-.+.++|..||-
T Consensus 116 ~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr 195 (342)
T smart00275 116 AIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGDPDYVPTEQDILRSRVPTTGIQETAFIVKKLFFRMFDVGGQR 195 (342)
T ss_pred HHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhCCCCCCCHHHhhheeCCccceEEEEEEECCeEEEEEecCCch
Confidence 4555555444555544344446666788888888322211 1100 011236789999982
Q ss_pred eeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-----ch-hhHHHHHHHHHHHHhh----cCCCEEEEecccccccc
Q 026584 79 ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-----DV-TKFISGCMASLSAMVQ----LELPHVNILSKMDLVTN 148 (236)
Q Consensus 79 Elf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-----dp-~~~is~~l~sls~m~~----l~lP~InVlsK~DLl~~ 148 (236)
..| ++-..... +.. +++|++|+.-.. ++ ..-+.-.+..+..+++ -+.|.+.++||.|++..
T Consensus 196 ---~~R---~kW~~~f~--~v~-~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~ 266 (342)
T smart00275 196 ---SER---KKWIHCFD--NVT-AIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEE 266 (342)
T ss_pred ---hhh---hhHHHHhC--CCC-EEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHH
Confidence 111 23334442 444 689999987431 11 1223333333333333 37899999999999864
Q ss_pred h---hHhhhhccc--cHHHHHHHhhhcchhHHHHHHHHHHHHhhc-c-CCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 149 K---KEIEDYLNP--ESQFLLSELNQHMAPQFAKLNKSLIELVDE-Y-SMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 149 ~---~~l~~~l~~--~~~~l~~~l~~~~~~~~~~l~~~l~~li~d-~-~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
+ ..+..+... +.... ++...-...+|.. +... - ..+-.+..++.|.+++..++..+...
T Consensus 267 Kl~~~~l~~~fp~y~g~~~~-~~~~~yi~~~F~~-------~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~ 332 (342)
T smart00275 267 KIKKVPLVDYFPDYKGPNDY-EAAAKFIKQKFLR-------LNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDI 332 (342)
T ss_pred HhCCCchhccCCCCCCCCCH-HHHHHHHHHHHHH-------hccCCCCceEEEEEeeecccHHHHHHHHHHHHH
Confidence 3 112222221 00000 0000001112222 2211 1 23778889999999999999887764
No 299
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=86.37 E-value=1.3 Score=43.10 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=42.1
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
-=|+|||| |-+.+-..=+-| +. .. .++.|+||.-=.=| .+|+ +.--+..+++-|.|+||+|--.
T Consensus 70 INIvDTPG------HADFGGEVERvl-~M-VD-gvlLlVDA~EGpMPQTrFV------lkKAl~~gL~PIVVvNKiDrp~ 134 (603)
T COG1217 70 INIVDTPG------HADFGGEVERVL-SM-VD-GVLLLVDASEGPMPQTRFV------LKKALALGLKPIVVINKIDRPD 134 (603)
T ss_pred EEEecCCC------cCCccchhhhhh-hh-cc-eEEEEEEcccCCCCchhhh------HHHHHHcCCCcEEEEeCCCCCC
Confidence 46899999 444443322223 22 12 47889999654433 5666 4556678999999999999754
No 300
>COG1161 Predicted GTPases [General function prediction only]
Probab=86.21 E-value=2.7 Score=38.59 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=41.9
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 149 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~ 149 (236)
.+-++||++. ..++.+...-+ ..-+++.++|++.-.....-. +.-. .-+-|.+.|+||+||++..
T Consensus 13 ~i~~~~g~~~------k~~~~~~~~~~--~~d~vvevvDar~P~~s~~~~------l~~~-v~~k~~i~vlNK~DL~~~~ 77 (322)
T COG1161 13 KIQWFPGHMK------KAKRQLKEVLK--SVDVVVEVVDARDPLGTRNPE------LERI-VKEKPKLLVLNKADLAPKE 77 (322)
T ss_pred cccCCCCchH------HHHHHHHHhcc--cCCEEEEEEeccccccccCcc------HHHH-HccCCcEEEEehhhcCCHH
Confidence 5566788443 44454444422 233689999996532222111 1222 2478889999999999765
Q ss_pred hHhhhhcc
Q 026584 150 KEIEDYLN 157 (236)
Q Consensus 150 ~~l~~~l~ 157 (236)
...+|..
T Consensus 78 -~~~~W~~ 84 (322)
T COG1161 78 -VTKKWKK 84 (322)
T ss_pred -HHHHHHH
Confidence 4444433
No 301
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.16 E-value=4 Score=35.47 Aligned_cols=110 Identities=14% Similarity=0.204 Sum_probs=61.2
Q ss_pred EEEeCCCceeeeeccchHHHHHHH-HhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~-L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
-|.||-||-...+ |... ..+...-+.+.-+.+-..+.+-...+...=-..+ =+.|.+.|=||+|+-.+
T Consensus 64 QiWDtaGQerf~t-------i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~----~~v~~~LvGNK~D~~~~ 132 (207)
T KOG0078|consen 64 QIWDTAGQERFRT-------ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS----DDVVKILVGNKCDLEEK 132 (207)
T ss_pred EEEEcccchhHHH-------HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC----CCCcEEEeecccccccc
Confidence 4667777654322 2222 2222211333333344445555554443222222 38999999999999643
Q ss_pred hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhc
Q 026584 149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~ 217 (236)
. +. ..+. -+ .+..+| -+.|.-.|++++.+|++.+..+-+.+.
T Consensus 133 R-~V---------------~~e~-------ge---~lA~e~-G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 133 R-QV---------------SKER-------GE---ALAREY-GIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred c-cc---------------cHHH-------HH---HHHHHh-CCeEEEccccCCCCHHHHHHHHHHHHH
Confidence 2 11 0001 11 223344 389999999999999999888877544
No 302
>CHL00175 minD septum-site determining protein; Validated
Probab=85.72 E-value=0.84 Score=40.37 Aligned_cols=14 Identities=43% Similarity=1.080 Sum_probs=11.4
Q ss_pred CCCEEEEeCCCcee
Q 026584 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
..+|||||||+.+.
T Consensus 126 ~yD~VIiDtpp~~~ 139 (281)
T CHL00175 126 GYDYILIDCPAGID 139 (281)
T ss_pred CCCEEEEeCCCCCC
Confidence 45899999999754
No 303
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.55 E-value=3.2 Score=39.11 Aligned_cols=73 Identities=16% Similarity=0.289 Sum_probs=47.8
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHh-----------hC------CCc-eEEEEeecC-CCccchhhHHHHHHHHHHHH
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLK-----------SR------NFN-VCAVYLLDS-QFITDVTKFISGCMASLSAM 129 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~-----------~~------~~~-~~~V~LiD~-~~~~dp~~~is~~l~sls~m 129 (236)
.=++||||--+.+-.+.+.+-+++++. +. +-| =|++|++-. .+..+|-+ +..|
T Consensus 81 LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D--------i~~M 152 (366)
T KOG2655|consen 81 LTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD--------IEFM 152 (366)
T ss_pred eEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh--------HHHH
Confidence 567999999998876666666665551 11 112 245665554 44456655 3344
Q ss_pred hh--cCCCEEEEecccccccch
Q 026584 130 VQ--LELPHVNILSKMDLVTNK 149 (236)
Q Consensus 130 ~~--l~lP~InVlsK~DLl~~~ 149 (236)
-+ -.+..|+|+.|+|.+...
T Consensus 153 k~l~~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 153 KKLSKKVNLIPVIAKADTLTKD 174 (366)
T ss_pred HHHhccccccceeeccccCCHH
Confidence 44 478899999999999766
No 304
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=85.02 E-value=5.7 Score=33.79 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=37.3
Q ss_pred CCCEEEEeCCCceeee-eccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 66 DDDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf-~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
+.++|||||||.-.-- .....++++++.+ .+.-+.+++++..-.+--.-+ ....-.+++.. .|+||.|
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~----~~~~~~LVlsa~~~~~~~~~~------~~~~~~~~~~~-lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEAL----NPDEVHLVLSATMGQEDLEQA------LAFYEAFGIDG-LILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHH----SSSEEEEEEEGGGGGHHHHHH------HHHHHHSSTCE-EEEESTT
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhc----CCccceEEEecccChHHHHHH------HHHhhcccCce-EEEEeec
Confidence 4589999999933110 1112233333333 223466677776543222211 22222345554 4599999
Q ss_pred cccchhH
Q 026584 145 LVTNKKE 151 (236)
Q Consensus 145 Ll~~~~~ 151 (236)
-..+.+.
T Consensus 152 et~~~G~ 158 (196)
T PF00448_consen 152 ETARLGA 158 (196)
T ss_dssp SSSTTHH
T ss_pred CCCCccc
Confidence 8766543
No 305
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.40 E-value=4.1 Score=40.35 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=37.9
Q ss_pred CCCEEEEeCCCceeeeeccch-HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPV-LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
+.++|||||||-. +++. ...-+..|... .....+.++++..- +.+.-. .+ . .++-.-+.-.|+||+|
T Consensus 428 ~~DLVLIDTaG~s----~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss--~~Dl~e-ii---~-~f~~~~~~gvILTKlD 495 (559)
T PRK12727 428 DYKLVLIDTAGMG----QRDRALAAQLNWLRAA-RQVTSLLVLPANAH--FSDLDE-VV---R-RFAHAKPQGVVLTKLD 495 (559)
T ss_pred cCCEEEecCCCcc----hhhHHHHHHHHHHHHh-hcCCcEEEEECCCC--hhHHHH-HH---H-HHHhhCCeEEEEecCc
Confidence 5689999999943 2222 11122233211 12345667787642 222221 11 1 1222346778999999
Q ss_pred cccchh
Q 026584 145 LVTNKK 150 (236)
Q Consensus 145 Ll~~~~ 150 (236)
-..+.+
T Consensus 496 Et~~lG 501 (559)
T PRK12727 496 ETGRFG 501 (559)
T ss_pred Cccchh
Confidence 866544
No 306
>PRK10818 cell division inhibitor MinD; Provisional
Probab=84.27 E-value=1.5 Score=38.31 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=11.8
Q ss_pred CCCEEEEeCCCcee
Q 026584 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
..+|+||||||.+.
T Consensus 113 ~yd~viiD~p~~~~ 126 (270)
T PRK10818 113 DFEFIVCDSPAGIE 126 (270)
T ss_pred CCCEEEEeCCCCcc
Confidence 45899999999775
No 307
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=84.17 E-value=10 Score=38.15 Aligned_cols=67 Identities=22% Similarity=0.360 Sum_probs=43.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
..-||||||.+- ||. ..-+.|+-++. +|.++|+..=-.+.. ...---|-|.+.|.|.-+||+|-++
T Consensus 105 ~iNiIDTPGHvD-FT~-----EVeRALrVlDG---aVlvl~aV~GVqsQt-----~tV~rQ~~ry~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 105 RINIIDTPGHVD-FTF-----EVERALRVLDG---AVLVLDAVAGVESQT-----ETVWRQMKRYNVPRICFINKMDRMG 170 (721)
T ss_pred eeEEecCCCcee-EEE-----EehhhhhhccC---eEEEEEcccceehhh-----HHHHHHHHhcCCCeEEEEehhhhcC
Confidence 458999999998 442 22233432332 455677754322222 2234568889999999999999987
Q ss_pred c
Q 026584 148 N 148 (236)
Q Consensus 148 ~ 148 (236)
.
T Consensus 171 a 171 (721)
T KOG0465|consen 171 A 171 (721)
T ss_pred C
Confidence 4
No 308
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=84.07 E-value=2.4 Score=38.77 Aligned_cols=76 Identities=18% Similarity=0.175 Sum_probs=47.0
Q ss_pred CCCEEEEeCCC------ceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEE
Q 026584 66 DDDYLVFDCPG------QIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 139 (236)
Q Consensus 66 ~~~Yil~D~PG------QiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InV 139 (236)
..+|.++|.|| --|+=+ +....--.++....--+++..|+|+..--.|.+... .+..=+.++|...|
T Consensus 182 ~~~~~~vDlPG~~~a~y~~~~~~--d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~-----i~~~ge~~VP~t~v 254 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGFELPA--DWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPE-----IAWLGENNVPMTSV 254 (320)
T ss_pred cceEEEEecCCcccccCCccCcc--hHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHH-----HHHHhhcCCCeEEe
Confidence 35799999999 112111 112222233332222256677889877666666553 44556789999999
Q ss_pred ecccccccc
Q 026584 140 LSKMDLVTN 148 (236)
Q Consensus 140 lsK~DLl~~ 148 (236)
+||||-.+.
T Consensus 255 fTK~DK~k~ 263 (320)
T KOG2486|consen 255 FTKCDKQKK 263 (320)
T ss_pred eehhhhhhh
Confidence 999998653
No 309
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=83.81 E-value=3.8 Score=44.05 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=52.0
Q ss_pred CCEEEEeCCCceeeeecc--------chHHHHHHHHhh----CCCceEEEEeecCCCcc--chh------hHHHHHHHHH
Q 026584 67 DDYLVFDCPGQIELFTHV--------PVLRNFVDHLKS----RNFNVCAVYLLDSQFIT--DVT------KFISGCMASL 126 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~--------~~~~~iv~~L~~----~~~~~~~V~LiD~~~~~--dp~------~~is~~l~sl 126 (236)
++-|++||+| -|+.. ..-..+++.|++ ...+ -+|..+|..-.. ++. .-+-.-|.-+
T Consensus 161 ~~avliDtaG---~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~pln-Gvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el 236 (1169)
T TIGR03348 161 DEAVLIDTAG---RYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLN-GVVVTVSLADLLTADPAERKAHARAIRQRLQEL 236 (1169)
T ss_pred CCEEEEcCCC---ccccCCCcccccHHHHHHHHHHHHHhCCCCCCC-eEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3569999999 45433 236678888863 2333 345556664432 332 3555566677
Q ss_pred HHHhhcCCCEEEEeccccccc
Q 026584 127 SAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 127 s~m~~l~lP~InVlsK~DLl~ 147 (236)
...+...+|+..|+||||++.
T Consensus 237 ~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 237 REQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHhCCCCCEEEEEecchhhc
Confidence 888889999999999999995
No 310
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.61 E-value=6.1 Score=37.73 Aligned_cols=74 Identities=14% Similarity=0.176 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCceeeeeccch--HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPV--LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~--~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
+.++|||||||. .+.+. +..+-+.+.......-+..++++..- +..+-. . ....-.+++ .=.|+||+
T Consensus 299 ~~DlVlIDt~G~----~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~-~---~~~f~~~~~-~~vI~TKl 367 (424)
T PRK05703 299 DCDVILIDTAGR----SQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKD-I---YKHFSRLPL-DGLIFTKL 367 (424)
T ss_pred CCCEEEEeCCCC----CCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHH-H---HHHhCCCCC-CEEEEecc
Confidence 568999999994 33332 22232333212233445566776543 222111 1 111122333 34679999
Q ss_pred ccccchh
Q 026584 144 DLVTNKK 150 (236)
Q Consensus 144 DLl~~~~ 150 (236)
|-....+
T Consensus 368 Det~~~G 374 (424)
T PRK05703 368 DETSSLG 374 (424)
T ss_pred ccccccc
Confidence 9865543
No 311
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=83.46 E-value=1 Score=39.18 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=11.1
Q ss_pred CCCEEEEeCCCcee
Q 026584 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
+-+|+|+|||+..-
T Consensus 119 ~yD~iiID~pp~l~ 132 (259)
T COG1192 119 DYDYIIIDTPPSLG 132 (259)
T ss_pred CCCEEEECCCCchh
Confidence 45899999999553
No 312
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.45 E-value=5.3 Score=35.92 Aligned_cols=75 Identities=13% Similarity=0.293 Sum_probs=40.3
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-chhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
+.+++||||||.. +.....+..+.+.+.... +.-+++++++.... +-...+.. +-.++ +.=.|+||.|
T Consensus 154 ~~D~ViIDt~Gr~--~~~~~~l~el~~~~~~~~-~~~~~LVl~a~~~~~d~~~~~~~-------f~~~~-~~~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKN--YRASETVEEMIETMGQVE-PDYICLTLSASMKSKDMIEIITN-------FKDIH-IDGIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCC--cCCHHHHHHHHHHHhhhC-CCeEEEEEcCccCHHHHHHHHHH-------hCCCC-CCEEEEEeec
Confidence 4589999999963 222333444444442211 22356678876543 33332221 11223 3345689999
Q ss_pred cccchhH
Q 026584 145 LVTNKKE 151 (236)
Q Consensus 145 Ll~~~~~ 151 (236)
-..+.+.
T Consensus 223 et~~~G~ 229 (270)
T PRK06731 223 ETASSGE 229 (270)
T ss_pred CCCCccH
Confidence 8776543
No 313
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.05 E-value=4.6 Score=35.14 Aligned_cols=32 Identities=9% Similarity=0.213 Sum_probs=28.6
Q ss_pred eeEEEeeccCcccHHHHHHHHHHhhcccccCC
Q 026584 192 VSFMPLDLRKESSIRYVLSQIDNCIQWGEDAD 223 (236)
Q Consensus 192 v~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~ 223 (236)
+-|+-.|++.+.+|+.|++.|-.++..-+..+
T Consensus 160 a~f~etsak~g~NVk~lFrrIaa~l~~~~~~~ 191 (221)
T KOG0094|consen 160 AEFIETSAKAGENVKQLFRRIAAALPGMEVLE 191 (221)
T ss_pred cEEEEecccCCCCHHHHHHHHHHhccCccccc
Confidence 48999999999999999999999998876655
No 314
>PLN00023 GTP-binding protein; Provisional
Probab=83.05 E-value=6.5 Score=36.61 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=37.5
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHH--HHHHHHHHHHhh------------cCC
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMVQ------------LEL 134 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~i--s~~l~sls~m~~------------l~l 134 (236)
.-|.||+||-..-. +.... -.+.. +++++.|.. ++..|- ..++-.+..... .++
T Consensus 85 LqIWDTAGqErfrs-------L~~~y-yr~Ad-giILVyDIT---dr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~i 152 (334)
T PLN00023 85 VELWDVSGHERYKD-------CRSLF-YSQIN-GVIFVHDLS---QRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPV 152 (334)
T ss_pred EEEEECCCChhhhh-------hhHHh-ccCCC-EEEEEEeCC---CHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence 45888898854221 11111 12333 577888854 344443 233333332211 248
Q ss_pred CEEEEecccccccc
Q 026584 135 PHVNILSKMDLVTN 148 (236)
Q Consensus 135 P~InVlsK~DLl~~ 148 (236)
|.|.|-||+||..+
T Consensus 153 pIILVGNK~DL~~~ 166 (334)
T PLN00023 153 PYIVIGNKADIAPK 166 (334)
T ss_pred cEEEEEECcccccc
Confidence 99999999999653
No 315
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=82.62 E-value=3.2 Score=39.12 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=12.0
Q ss_pred CCEEEEeCCCceeee
Q 026584 67 DDYLVFDCPGQIELF 81 (236)
Q Consensus 67 ~~Yil~D~PGQiElf 81 (236)
-+|||||||+++-..
T Consensus 235 YD~IlID~pPslg~l 249 (387)
T PHA02519 235 YDIIVIDSAPNLGTG 249 (387)
T ss_pred CCEEEEECCCCccHH
Confidence 489999999977533
No 316
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=82.39 E-value=6.3 Score=36.20 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=39.9
Q ss_pred CCCEEEEeCCCceeeee-ccchHHHHHHHHhh--CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584 66 DDDYLVFDCPGQIELFT-HVPVLRNFVDHLKS--RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~-~~~~~~~iv~~L~~--~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
..+||||||||....=. ....++++.+.+.+ ...+.-+++++|+.. ....+. .. ....+.--+.-.|+||
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~--g~~~~~-~a----~~f~~~~~~~giIlTK 268 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT--GQNALS-QA----KAFHEAVGLTGIILTK 268 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC--ChHHHH-HH----HHHHhhCCCCEEEEEC
Confidence 45899999999644211 11334444443321 122334678899883 222222 11 1111111355678999
Q ss_pred cccccch
Q 026584 143 MDLVTNK 149 (236)
Q Consensus 143 ~DLl~~~ 149 (236)
+|-....
T Consensus 269 lD~t~~~ 275 (318)
T PRK10416 269 LDGTAKG 275 (318)
T ss_pred CCCCCCc
Confidence 9965443
No 317
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.32 E-value=8.7 Score=39.60 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=40.3
Q ss_pred cCCCCEEEEeCCCceeeeeccch-HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584 64 YLDDDYLVFDCPGQIELFTHVPV-LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 64 ~~~~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
..+.++||||||| -.|++. +..-+..+.....+.-++.++|+..-. ..+- ...-+.+...-.+ +.=.|+||
T Consensus 261 ~~~~D~VLIDTAG----Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--~~l~-~i~~~f~~~~~~~-i~glIlTK 332 (767)
T PRK14723 261 LGDKHLVLIDTVG----MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--DTLN-EVVHAYRHGAGED-VDGCIITK 332 (767)
T ss_pred hcCCCEEEEeCCC----CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--HHHH-HHHHHHhhcccCC-CCEEEEec
Confidence 3355899999999 333332 223333333233344577888887532 2211 1111111100012 34467999
Q ss_pred cccccchhH
Q 026584 143 MDLVTNKKE 151 (236)
Q Consensus 143 ~DLl~~~~~ 151 (236)
.|=..+.+.
T Consensus 333 LDEt~~~G~ 341 (767)
T PRK14723 333 LDEATHLGP 341 (767)
T ss_pred cCCCCCccH
Confidence 998766543
No 318
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=81.69 E-value=3.5 Score=40.34 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=77.3
Q ss_pred ccccCcCHHHHHhhcCCC--------ChHHHHHHHHHHHHhhHHHHHHHhcc----------cCCCCEEEEeCCCceeee
Q 026584 20 DIRELISLEDVMEELGLG--------PNGGLIYCMEHLEDNLDDWLAEELDN----------YLDDDYLVFDCPGQIELF 81 (236)
Q Consensus 20 DIrd~i~~~dvM~~~~LG--------PNGalv~~me~l~~n~~~wl~~~i~~----------~~~~~Yil~D~PGQiElf 81 (236)
||.-.+..-|.|+....| ||-|...-+|.|.+.=..+.....+. ...-...|.||-|--|
T Consensus 251 ~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe-- 328 (531)
T KOG1191|consen 251 DVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE-- 328 (531)
T ss_pred HHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc--
Confidence 333444555677777777 89999999988875311333322221 1123579999999877
Q ss_pred eccchHHH-HHHHHh-hCCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcC------CCEEEEecccccccc
Q 026584 82 THVPVLRN-FVDHLK-SRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLE------LPHVNILSKMDLVTN 148 (236)
Q Consensus 82 ~~~~~~~~-iv~~L~-~~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~------lP~InVlsK~DLl~~ 148 (236)
...+..-+ =+++-+ +....=++++++|+.. ++....-++..+-....++... -|.+.|.||.|+.++
T Consensus 329 ~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 329 ESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred ccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 22222211 122222 2222236888999944 3333334566777777777766 899999999999876
No 319
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=80.86 E-value=2.4 Score=43.05 Aligned_cols=61 Identities=21% Similarity=0.396 Sum_probs=37.3
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC--ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF--ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~--~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
=++||||.+- .+......|...+ .+|.++|+.- .-+....+ ---+.-.+|.+.|+||+|.+
T Consensus 200 nilDTPGHVn------F~DE~ta~l~~sD---gvVlvvDv~EGVmlntEr~i-------khaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 200 NILDTPGHVN------FSDETTASLRLSD---GVVLVVDVAEGVMLNTERII-------KHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred eeecCCCccc------chHHHHHHhhhcc---eEEEEEEcccCceeeHHHHH-------HHHHhccCcEEEEEehhHHH
Confidence 4799999664 2333344453223 4677788742 22333333 22344689999999999987
No 320
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=80.70 E-value=3.4 Score=40.03 Aligned_cols=66 Identities=17% Similarity=0.292 Sum_probs=40.8
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
.=|.||||.-- | .-.=-+.|..-+ ++|.+|||..=-.|...= |+ --|.+| ++|.++.+||.|--.+
T Consensus 83 iNLLDTPGHeD-F-----SEDTYRtLtAvD---sAvMVIDaAKGiE~qT~K---Lf-eVcrlR-~iPI~TFiNKlDR~~r 148 (528)
T COG4108 83 VNLLDTPGHED-F-----SEDTYRTLTAVD---SAVMVIDAAKGIEPQTLK---LF-EVCRLR-DIPIFTFINKLDREGR 148 (528)
T ss_pred EeccCCCCccc-c-----chhHHHHHHhhh---eeeEEEecccCccHHHHH---HH-HHHhhc-CCceEEEeeccccccC
Confidence 46899999544 2 222223343323 588999998766655422 11 123333 9999999999997654
No 321
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=80.69 E-value=4.7 Score=38.20 Aligned_cols=23 Identities=39% Similarity=0.722 Sum_probs=15.0
Q ss_pred HHHHhcccC-CCCEEEEeCCCcee
Q 026584 57 LAEELDNYL-DDDYLVFDCPGQIE 79 (236)
Q Consensus 57 l~~~i~~~~-~~~Yil~D~PGQiE 79 (236)
|.+.|.... +-+|||||||+..-
T Consensus 241 L~~~L~~~~~~yD~IiIDtpP~l~ 264 (405)
T PRK13869 241 VAQAFDEVADDYDVVVIDCPPQLG 264 (405)
T ss_pred HHHHHHHhhccCCEEEEECCCchh
Confidence 444444431 34899999999664
No 322
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=80.46 E-value=7.9 Score=37.27 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=40.4
Q ss_pred CCCEEEEeCCCceeeeeccch--HHHHHHHHhhC--CCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEec
Q 026584 66 DDDYLVFDCPGQIELFTHVPV--LRNFVDHLKSR--NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 141 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~--~~~iv~~L~~~--~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVls 141 (236)
..++|+||||| +.+++. +..+-+.+... ..+.-.++++||..-.+-..-+ ....-.+++. =.|+|
T Consensus 299 ~~D~VLIDTaG----r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~------~~~f~~~~~~-glIlT 367 (432)
T PRK12724 299 GSELILIDTAG----YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV------LKAYESLNYR-RILLT 367 (432)
T ss_pred CCCEEEEeCCC----CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH------HHHhcCCCCC-EEEEE
Confidence 55899999999 555443 33333333211 1233467778887654222211 1122223443 45799
Q ss_pred ccccccchhH
Q 026584 142 KMDLVTNKKE 151 (236)
Q Consensus 142 K~DLl~~~~~ 151 (236)
|.|=..+.+.
T Consensus 368 KLDEt~~~G~ 377 (432)
T PRK12724 368 KLDEADFLGS 377 (432)
T ss_pred cccCCCCccH
Confidence 9998766543
No 323
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=80.08 E-value=9.3 Score=36.21 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=41.0
Q ss_pred CCCEEEEeCCCceeeeeccchH--HHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVL--RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~--~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
+.++|||||||. .|++.+ .++-+.+...+.+.-++.++|+..- +.... ..+ ...-.++ +.=.|+||.
T Consensus 254 ~~DlVLIDTaGr----~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~-~~~---~~~~~~~-~~~~I~TKl 322 (388)
T PRK12723 254 DFDLVLVDTIGK----SPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVK-EIF---HQFSPFS-YKTVIFTKL 322 (388)
T ss_pred CCCEEEEcCCCC----CccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHH-HHH---HHhcCCC-CCEEEEEec
Confidence 568999999994 355543 3444444333333346777887654 22211 111 1111123 445679999
Q ss_pred ccccchhHh
Q 026584 144 DLVTNKKEI 152 (236)
Q Consensus 144 DLl~~~~~l 152 (236)
|=..+.+.+
T Consensus 323 Det~~~G~~ 331 (388)
T PRK12723 323 DETTCVGNL 331 (388)
T ss_pred cCCCcchHH
Confidence 987665543
No 324
>PRK09602 translation-associated GTPase; Reviewed
Probab=80.01 E-value=4.7 Score=38.17 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=31.8
Q ss_pred CCeeEEEeeccCcccHHH-HHHHHHHhhcccccCCCCCC
Q 026584 190 SMVSFMPLDLRKESSIRY-VLSQIDNCIQWGEDADLKIK 227 (236)
Q Consensus 190 ~lv~f~pls~~d~~~i~~-L~~~Id~~~~y~ed~~~~~~ 227 (236)
+...++|+|+..+.++.. +...+-+.++.++...|.+.
T Consensus 243 ~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ 281 (396)
T PRK09602 243 KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGE 281 (396)
T ss_pred CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcccc
Confidence 456789999999999999 88888888888877777654
No 325
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=79.76 E-value=7.2 Score=37.52 Aligned_cols=75 Identities=12% Similarity=0.268 Sum_probs=39.4
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccch-hhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp-~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
.++|||||||.. ......+..+.+.++.. ..--+++++|+..-... ...+. .+-.+++ .=.|+||.|=
T Consensus 321 ~DvVLIDTaGRs--~kd~~lm~EL~~~lk~~-~PdevlLVLsATtk~~d~~~i~~-------~F~~~~i-dglI~TKLDE 389 (436)
T PRK11889 321 VDYILIDTAGKN--YRASETVEEMIETMGQV-EPDYICLTLSASMKSKDMIEIIT-------NFKDIHI-DGIVFTKFDE 389 (436)
T ss_pred CCEEEEeCcccc--CcCHHHHHHHHHHHhhc-CCCeEEEEECCccChHHHHHHHH-------HhcCCCC-CEEEEEcccC
Confidence 489999999952 22233355555555322 22234566777543322 22221 1112333 3346899998
Q ss_pred ccchhHh
Q 026584 146 VTNKKEI 152 (236)
Q Consensus 146 l~~~~~l 152 (236)
....+.+
T Consensus 390 T~k~G~i 396 (436)
T PRK11889 390 TASSGEL 396 (436)
T ss_pred CCCccHH
Confidence 7665433
No 326
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=79.35 E-value=6.3 Score=34.04 Aligned_cols=118 Identities=16% Similarity=0.132 Sum_probs=61.4
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHhhcCCCEEEEeccccccc
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
=+.||-||-|.-.-| -| .|+-.=|||+ +..+.+|.+|-.. --+--.....=+.|.|.|-+|.||-.
T Consensus 56 ~LwDTAGqedYDrlR--------pl---sY~~tdvfl~-cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 56 GLWDTAGQEDYDRLR--------PL---SYPQTDVFLL-CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD 123 (198)
T ss_pred eeeecCCCccccccc--------cc---CCCCCCEEEE-EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh
Confidence 478999999963321 12 2222223322 2345566665421 11122222334799999999999974
Q ss_pred chhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 148 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 148 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
+...+++.-... ...+ ....-. ++-.+-|.++++--|+...+++.+++...=
T Consensus 124 d~~~~~~l~~~~-~~~V------t~~~g~-------~lA~~iga~~y~EcSa~tq~~v~~vF~~a~ 175 (198)
T KOG0393|consen 124 DPSTLEKLQRQG-LEPV------TYEQGL-------ELAKEIGAVKYLECSALTQKGVKEVFDEAI 175 (198)
T ss_pred CHHHHHHHHhcc-CCcc------cHHHHH-------HHHHHhCcceeeeehhhhhCCcHHHHHHHH
Confidence 432222111100 0000 000111 233445668899999999999888876443
No 327
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=78.58 E-value=3.7 Score=38.35 Aligned_cols=134 Identities=13% Similarity=0.252 Sum_probs=71.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc-----cch-hhHHHHHHHHHHHHhh----cCCCEE
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-----TDV-TKFISGCMASLSAMVQ----LELPHV 137 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~-----~dp-~~~is~~l~sls~m~~----l~lP~I 137 (236)
.|-++|.-||- ..-++-+..+. +.. +++|+++..-. .++ .+-+.-.|.-...+++ -..|.|
T Consensus 237 ~~~~~DvGGqr------~eRkKW~~~F~--~v~-~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~ii 307 (389)
T PF00503_consen 237 KFRLIDVGGQR------SERKKWIHCFE--DVT-AVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPII 307 (389)
T ss_dssp EEEEEEETSSG------GGGGGGGGGGT--TES-EEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEE
T ss_pred ccceecCCCCc------hhhhhHHHHhc--ccc-EEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceE
Confidence 47889999982 23333344442 454 68999986432 222 2333333333333222 278999
Q ss_pred EEecccccccch---hH-hhhhccccHHHHHHHhhhcchhHHHH-HHHHHHHHhhcc---CCeeEEEeeccCcccHHHHH
Q 026584 138 NILSKMDLVTNK---KE-IEDYLNPESQFLLSELNQHMAPQFAK-LNKSLIELVDEY---SMVSFMPLDLRKESSIRYVL 209 (236)
Q Consensus 138 nVlsK~DLl~~~---~~-l~~~l~~~~~~l~~~l~~~~~~~~~~-l~~~l~~li~d~---~lv~f~pls~~d~~~i~~L~ 209 (236)
.+|||+|++..+ +. +..+.. +.. .... .......+ +.....++.... .-+..+..++.|.+.+..++
T Consensus 308 l~lnK~D~f~~Kl~~~~~l~~~fp-~y~---g~~~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~ 382 (389)
T PF00503_consen 308 LFLNKIDLFEEKLKKGPKLSKYFP-DYT---GDRP-NDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVF 382 (389)
T ss_dssp EEEE-HHHHHHHTTTSSCGGGTST-TGG---SH-T-SSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHH
T ss_pred EeeecHHHHHHHccCCCchHhhCC-CCC---CCcc-cCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHH
Confidence 999999998643 11 222222 110 0000 00011111 222233344444 34788899999999999999
Q ss_pred HHHHHh
Q 026584 210 SQIDNC 215 (236)
Q Consensus 210 ~~Id~~ 215 (236)
..|-..
T Consensus 383 ~~v~~~ 388 (389)
T PF00503_consen 383 NAVKDI 388 (389)
T ss_dssp HHHHHH
T ss_pred HHhcCc
Confidence 988764
No 328
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=77.68 E-value=12 Score=32.61 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=11.6
Q ss_pred hcCCCEEEEecccc
Q 026584 131 QLELPHVNILSKMD 144 (236)
Q Consensus 131 ~l~lP~InVlsK~D 144 (236)
+-++|+..|+|.++
T Consensus 138 ~~~l~~~iv~~~~~ 151 (231)
T PRK13849 138 NLAIPTAILRQRVP 151 (231)
T ss_pred CCCCCeEEEEEecc
Confidence 55889888999886
No 329
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=77.50 E-value=3 Score=35.27 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=10.6
Q ss_pred CCCEEEEeCCCcee
Q 026584 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
+.+|||||||....
T Consensus 148 ~~D~IiiD~pp~~~ 161 (207)
T TIGR03018 148 PDRIIIIDTPPLLV 161 (207)
T ss_pred CCCEEEEECCCCcc
Confidence 34899999998443
No 330
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=77.05 E-value=13 Score=33.34 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=39.4
Q ss_pred CCCEEEEeCCCceeee-eccchHHHHHHHHhh--CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584 66 DDDYLVFDCPGQIELF-THVPVLRNFVDHLKS--RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf-~~~~~~~~iv~~L~~--~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
..+|+||||||....= .....++++.+..++ ....--+++++|+.. ....+- .. ....-+.+ +.-.|+||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~-~~---~~f~~~~~-~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALE-QA---KVFNEAVG-LTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHH-HH---HHHHhhCC-CCEEEEEc
Confidence 4589999999965410 011123333333321 112334678889863 333322 11 11111133 46778999
Q ss_pred cccccchh
Q 026584 143 MDLVTNKK 150 (236)
Q Consensus 143 ~DLl~~~~ 150 (236)
+|-..+.+
T Consensus 227 lDe~~~~G 234 (272)
T TIGR00064 227 LDGTAKGG 234 (272)
T ss_pred cCCCCCcc
Confidence 99866543
No 331
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.02 E-value=9.1 Score=33.17 Aligned_cols=109 Identities=11% Similarity=0.165 Sum_probs=59.6
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
-=|+||-||--+ +.+.+.--+ +. .-++.+-|-. ..+.=+-++++|.-+-....-++-.+.+-||+||.++
T Consensus 57 lqiwDtaGqe~f-------rsv~~syYr-~a-~GalLVydit-~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 57 LQIWDTAGQESF-------RSVTRSYYR-GA-AGALLVYDIT-RRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred EEEEecCCcHHH-------HHHHHHHhc-cC-cceEEEEEcc-chhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 468888887432 222222212 11 2233334422 2233333566665555444556777777899999765
Q ss_pred hhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 149 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 149 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
. +..+ +.++ ..-++++++.+ --|+++.+++++.+..+-+
T Consensus 127 R-~Vs~---------------EEGe----------aFA~ehgLifm-ETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 127 R-EVSK---------------EEGE----------AFAREHGLIFM-ETSAKTAENVEEAFINTAK 165 (216)
T ss_pred c-cccH---------------HHHH----------HHHHHcCceee-hhhhhhhhhHHHHHHHHHH
Confidence 5 2211 1111 12335777655 7888999888888776554
No 332
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=76.36 E-value=34 Score=26.88 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=31.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc--chhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT--DVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~--dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
.+|+++|||+.++- .....++..+ .++.+++....+ +-..++.. +. ...-..+...|+||++
T Consensus 45 yd~VIiD~p~~~~~--------~~~~~l~~aD---~vviv~~~~~~s~~~~~~~l~~----l~-~~~~~~~~~lVvN~~~ 108 (139)
T cd02038 45 YDYIIIDTGAGISD--------NVLDFFLAAD---EVIVVTTPEPTSITDAYALIKK----LA-KQLRVLNFRVVVNRAE 108 (139)
T ss_pred CCEEEEECCCCCCH--------HHHHHHHhCC---eEEEEcCCChhHHHHHHHHHHH----HH-HhcCCCCEEEEEeCCC
Confidence 47999999995431 1123343333 356666664332 11222211 11 1112456667889886
No 333
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=75.80 E-value=1.8 Score=37.72 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhccCCeeEEEeeccCcccH
Q 026584 175 FAKLNKSLIELVDEYSMVSFMPLDLRKESSI 205 (236)
Q Consensus 175 ~~~l~~~l~~li~d~~lv~f~pls~~d~~~i 205 (236)
|+++.+ ++++.++++.+.|+..++-+++
T Consensus 238 ~~~La~---el~~~~~~~~~~~~~~~~~~~~ 265 (270)
T cd02040 238 YRELAR---KIVENKLLVIPTPLEMDELEEL 265 (270)
T ss_pred HHHHHH---HHHhcCCCCCCCCCCHHHHHHH
Confidence 445544 4456777888888877655543
No 334
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=75.78 E-value=4 Score=33.14 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE-Eecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN-ILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In-VlsK~D 144 (236)
+.+|+|+|||+.+. +.. ...+...... .++.++.+... + +....-.+..+-+.+.|.+- |+|+++
T Consensus 67 ~yD~VIiD~pp~~~-----~~~---~~~~~~~~ad-~viiV~~p~~~-s----~~~~~~~~~~l~~~~~~~~gvv~N~~~ 132 (169)
T cd02037 67 ELDYLVIDMPPGTG-----DEH---LTLAQSLPID-GAVIVTTPQEV-A----LDDVRKAIDMFKKVNIPILGVVENMSY 132 (169)
T ss_pred CCCEEEEeCCCCCc-----HHH---HHHHhccCCC-eEEEEECCchh-h----HHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 45899999999532 111 1122101112 23444443321 1 22233334555567888764 478887
Q ss_pred c
Q 026584 145 L 145 (236)
Q Consensus 145 L 145 (236)
-
T Consensus 133 ~ 133 (169)
T cd02037 133 F 133 (169)
T ss_pred c
Confidence 5
No 335
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=75.12 E-value=12 Score=36.03 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=34.2
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHh---hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEecc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLK---SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSK 142 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~---~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK 142 (236)
.++|||||||+.-. . ..+++.|+ ..-..-.+++++|+..-. +.+. .+..++-.++. -.|+||
T Consensus 176 ~DvVIIDTAGr~~~--d----~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~-----~a~~F~~~l~i~gvIlTK 241 (437)
T PRK00771 176 ADVIIVDTAGRHAL--E----EDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKN-----QAKAFHEAVGIGGIIITK 241 (437)
T ss_pred CCEEEEECCCcccc--h----HHHHHHHHHHHHHhcccceeEEEeccccH---HHHH-----HHHHHHhcCCCCEEEEec
Confidence 48999999996432 1 12222221 111123467889986532 2221 11122212333 456899
Q ss_pred cccccc
Q 026584 143 MDLVTN 148 (236)
Q Consensus 143 ~DLl~~ 148 (236)
+|--.+
T Consensus 242 lD~~a~ 247 (437)
T PRK00771 242 LDGTAK 247 (437)
T ss_pred ccCCCc
Confidence 997544
No 336
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=74.66 E-value=10 Score=35.43 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=13.8
Q ss_pred HHHHhcccC-CCCEEEEeCCCce
Q 026584 57 LAEELDNYL-DDDYLVFDCPGQI 78 (236)
Q Consensus 57 l~~~i~~~~-~~~Yil~D~PGQi 78 (236)
+.+.+.... +-+|||||||+..
T Consensus 224 l~~~l~~l~~~yD~IiiD~pp~~ 246 (387)
T TIGR03453 224 VGEALAEVEDDYDVVVIDCPPQL 246 (387)
T ss_pred HHHHHHHHHhcCCEEEEeCCccH
Confidence 344444331 3489999999944
No 337
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=73.61 E-value=13 Score=33.59 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=27.2
Q ss_pred EEEEeecCC-CccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhh
Q 026584 102 CAVYLLDSQ-FITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIE 153 (236)
Q Consensus 102 ~~V~LiD~~-~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~ 153 (236)
|++|+++.. .-..|.+.- +|-.+ .-.++.|+|++|+|.+... ++.
T Consensus 116 ~cLYfI~pt~~~L~~~Di~--~mk~L----s~~vNvIPvIaKaD~lt~~-el~ 161 (281)
T PF00735_consen 116 ACLYFIPPTGHGLKPLDIE--FMKRL----SKRVNVIPVIAKADTLTPE-ELQ 161 (281)
T ss_dssp EEEEEE-TTSSSS-HHHHH--HHHHH----TTTSEEEEEESTGGGS-HH-HHH
T ss_pred eEEEEEcCCCccchHHHHH--HHHHh----cccccEEeEEecccccCHH-HHH
Confidence 688888864 334455543 12222 2367889999999999865 453
No 338
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=73.46 E-value=3.4 Score=36.15 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=11.3
Q ss_pred CCCEEEEeCCCcee
Q 026584 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
+-+|+||||||.+.
T Consensus 115 ~yD~vIIDt~g~~~ 128 (267)
T cd02032 115 EYDVILFDVLGDVV 128 (267)
T ss_pred cCCEEEEeCCCCcc
Confidence 45899999999654
No 339
>PRK10867 signal recognition particle protein; Provisional
Probab=72.37 E-value=13 Score=35.87 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=21.7
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 111 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~ 111 (236)
..+++||||||..- .....+..+ ..+...-.+--+++++|+..
T Consensus 183 ~~DvVIIDTaGrl~--~d~~lm~eL-~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 183 GYDVVIVDTAGRLH--IDEELMDEL-KAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred CCCEEEEeCCCCcc--cCHHHHHHH-HHHHHhhCCCeEEEEEeccc
Confidence 45799999999532 111222222 22222111223588888753
No 340
>PRK14974 cell division protein FtsY; Provisional
Probab=72.04 E-value=19 Score=33.42 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=36.0
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHh-hcCCCEEEEeccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKM 143 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~-~l~lP~InVlsK~ 143 (236)
..++|||||||..- +....+..+ +.+.+ .+ .-.+++++|+..-. +-+... .... ..+ +.-.|+||+
T Consensus 222 ~~DvVLIDTaGr~~--~~~~lm~eL-~~i~~~~~-pd~~iLVl~a~~g~---d~~~~a----~~f~~~~~-~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMH--TDANLMDEL-KKIVRVTK-PDLVIFVGDALAGN---DAVEQA----REFNEAVG-IDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccC--CcHHHHHHH-HHHHHhhC-CceEEEeeccccch---hHHHHH----HHHHhcCC-CCEEEEeee
Confidence 34699999999653 122222222 22211 12 22467888885422 222110 1111 123 356689999
Q ss_pred ccccch
Q 026584 144 DLVTNK 149 (236)
Q Consensus 144 DLl~~~ 149 (236)
|-..+.
T Consensus 290 D~~~~~ 295 (336)
T PRK14974 290 DADAKG 295 (336)
T ss_pred cCCCCc
Confidence 986554
No 341
>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning]
Probab=71.80 E-value=2.4 Score=38.59 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=28.7
Q ss_pred CCCc-cccccCcCHHHHHhhc---CCCChHHHHHHHHHH
Q 026584 15 YPVA-MDIRELISLEDVMEEL---GLGPNGGLIYCMEHL 49 (236)
Q Consensus 15 Y~~~-iDIrd~i~~~dvM~~~---~LGPNGalv~~me~l 49 (236)
|.|+ |+|-.+|+-++...+- -.||||+-+.++|.|
T Consensus 139 v~CdiIkIgn~V~nkerFvKRRqRLiGpng~TLKAlelL 177 (356)
T KOG2874|consen 139 VACDIIKIGNLVRNKERFVKRRQRLIGPNGSTLKALELL 177 (356)
T ss_pred cceeeeehhhhhccHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 4566 4999999999977643 389999999999877
No 342
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=71.20 E-value=18 Score=29.31 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=35.8
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC--E-EEEeccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP--H-VNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP--~-InVlsK~ 143 (236)
.+|+|||||+.+... ....+...+ .+|..++..... +..+......+-+++.+ . -.|+||+
T Consensus 95 yD~iiiD~~~~~~~~--------~~~~l~~ad---~viv~~~~~~~~-----i~~~~~~~~~l~~~~~~~~~~~vv~N~v 158 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--------VRNALAAAD---YVIVPIEPDPSS-----IEGAERLIELLKRLGKKLKIIGVVINRV 158 (195)
T ss_dssp SSEEEEEECSSSSHH--------HHHHHHTSS---EEEEEEESSHHH-----HHHHHHHHHHHHHHTHTEEEEEEEEEEE
T ss_pred ccceeecccccccHH--------HHHHHHhCc---eeeeecCCcHHH-----HHHHHHHHHHHHHhccccceEEEEEeee
Confidence 689999999966543 233343223 234444443321 44444445556666643 3 4468998
Q ss_pred ccc
Q 026584 144 DLV 146 (236)
Q Consensus 144 DLl 146 (236)
+.-
T Consensus 159 ~~~ 161 (195)
T PF01656_consen 159 DPG 161 (195)
T ss_dssp TSC
T ss_pred CCC
Confidence 764
No 343
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=70.79 E-value=20 Score=30.16 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=46.4
Q ss_pred EeCCCc-eeeeeccchHHHHHHHHhh----CCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 72 FDCPGQ-IELFTHVPVLRNFVDHLKS----RNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 72 ~D~PGQ-iElf~~~~~~~~iv~~L~~----~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
+|-||| ++||.|-..++..++.+.+ ...-+|+|| |.. +-.+| ++-+|--.-...- .+|-|.|-||+|
T Consensus 50 v~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY--DVT---n~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d 123 (198)
T KOG0079|consen 50 VDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY--DVT---NGESFNNVKRWLEEIRNNCD-SVPKVLVGNKND 123 (198)
T ss_pred eecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE--ECc---chhhhHhHHHHHHHHHhcCc-cccceecccCCC
Confidence 688997 7999999999887777752 222244554 433 22333 3344443433333 789999999999
Q ss_pred cccch
Q 026584 145 LVTNK 149 (236)
Q Consensus 145 Ll~~~ 149 (236)
+-.++
T Consensus 124 ~~~Rr 128 (198)
T KOG0079|consen 124 DPERR 128 (198)
T ss_pred Cccce
Confidence 97654
No 344
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=70.26 E-value=16 Score=31.17 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=15.5
Q ss_pred HHHHHHhcccC--CCCEEEEeCCCce
Q 026584 55 DWLAEELDNYL--DDDYLVFDCPGQI 78 (236)
Q Consensus 55 ~wl~~~i~~~~--~~~Yil~D~PGQi 78 (236)
+|+++.++... ..+|+|+|||+.+
T Consensus 101 ~~l~~~l~~l~~~~~D~viiD~pp~~ 126 (246)
T TIGR03371 101 GWLARLLQQLDLAARDWVLIDVPRGP 126 (246)
T ss_pred HHHHHHHHhcccCCCCEEEEECCCCc
Confidence 56655555442 1389999999943
No 345
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=68.84 E-value=7.1 Score=37.16 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=37.5
Q ss_pred CEEEecCCCCCCC-C---------CCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEE
Q 026584 1 MHIVNLDPAAENF-D---------YPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYL 70 (236)
Q Consensus 1 ~~iVNLDPa~e~~-~---------Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yi 70 (236)
|+++.+|||..++ | -.+-++.+++-...-.. ==..=|.|..--++.-. .|+.+...+ ..+.+
T Consensus 104 v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~F-vG~isP~~~~~~~i~~v-----~rL~~~a~~--~~~~i 175 (398)
T COG1341 104 VAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYF-VGSISPQGFPGRYIAGV-----ARLVDLAKK--EADFI 175 (398)
T ss_pred EEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEE-EeccCCCCChHHHHHHH-----HHHHHHhhc--cCCEE
Confidence 5799999999643 1 12233333332221111 00133777666555544 444444333 35789
Q ss_pred EEeCCCce
Q 026584 71 VFDCPGQI 78 (236)
Q Consensus 71 l~D~PGQi 78 (236)
|+||||-|
T Consensus 176 lIdT~GWi 183 (398)
T COG1341 176 LIDTDGWI 183 (398)
T ss_pred EEcCCCce
Confidence 99999944
No 346
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=68.82 E-value=3.1 Score=37.38 Aligned_cols=11 Identities=64% Similarity=1.129 Sum_probs=8.4
Q ss_pred CCCEEEEeCCC
Q 026584 66 DDDYLVFDCPG 76 (236)
Q Consensus 66 ~~~Yil~D~PG 76 (236)
+.+||+|||||
T Consensus 98 ~~DfLVID~PG 108 (261)
T PF09140_consen 98 DLDFLVIDTPG 108 (261)
T ss_dssp H-SEEEEEE-S
T ss_pred CCCEEEEeCCC
Confidence 56899999999
No 347
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=68.80 E-value=5.5 Score=40.91 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=36.9
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
-|-+||+||.+-+-.-.++..+ | + +. ++.|+|+.---.+..+- . +.--..=++..+.|+||+|-+
T Consensus 73 ~~nlidspghvdf~sevssas~----l-~-d~---alvlvdvvegv~~qt~~-v----lrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 73 LINLIDSPGHVDFSSEVSSASR----L-S-DG---ALVLVDVVEGVCSQTYA-V----LRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred EEEEecCCCccchhhhhhhhhh----h-c-CC---cEEEEeeccccchhHHH-H----HHHHHHccCceEEEEehhhhH
Confidence 4689999998875443333322 3 2 22 45567764322222221 0 122234689999999999943
No 348
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=67.07 E-value=20 Score=34.48 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=10.6
Q ss_pred CCCEEEEeCCCce
Q 026584 66 DDDYLVFDCPGQI 78 (236)
Q Consensus 66 ~~~Yil~D~PGQi 78 (236)
..++|||||||..
T Consensus 182 ~~DvVIIDTaGr~ 194 (428)
T TIGR00959 182 GFDVVIVDTAGRL 194 (428)
T ss_pred CCCEEEEeCCCcc
Confidence 4579999999953
No 349
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=66.80 E-value=6 Score=33.92 Aligned_cols=14 Identities=50% Similarity=1.130 Sum_probs=11.5
Q ss_pred CCCEEEEeCCCcee
Q 026584 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
..+|+||||||.+.
T Consensus 111 ~~D~viiD~p~~~~ 124 (261)
T TIGR01968 111 EFDYVIIDCPAGIE 124 (261)
T ss_pred hCCEEEEeCCCCcC
Confidence 35899999999765
No 350
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=66.16 E-value=37 Score=34.90 Aligned_cols=30 Identities=7% Similarity=0.124 Sum_probs=20.0
Q ss_pred CEEEEecccccccchh------HhhhhccccHHHHH
Q 026584 135 PHVNILSKMDLVTNKK------EIEDYLNPESQFLL 164 (236)
Q Consensus 135 P~InVlsK~DLl~~~~------~l~~~l~~~~~~l~ 164 (236)
=.|.|+|..|.+..++ .++.|+...++.|.
T Consensus 238 ~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq 273 (763)
T TIGR00993 238 NAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQ 273 (763)
T ss_pred CEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHH
Confidence 4678899999996431 46777775444443
No 351
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=64.87 E-value=32 Score=33.34 Aligned_cols=116 Identities=19% Similarity=0.262 Sum_probs=69.0
Q ss_pred HHHHHHHhh-CCCceEEEEeecCCC-ccchhhHHHHHHHHHHHHhhcCCCE---EEEecccccccchhHhhhhcc----c
Q 026584 88 RNFVDHLKS-RNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPH---VNILSKMDLVTNKKEIEDYLN----P 158 (236)
Q Consensus 88 ~~iv~~L~~-~~~~~~~V~LiD~~~-~~dp~~~is~~l~sls~m~~l~lP~---InVlsK~DLl~~~~~l~~~l~----~ 158 (236)
++|-..|-+ .+.+=|+|.++||.- .......+ ...++=+-|| |.|||||||+.-- .-..|+. +
T Consensus 201 kRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~v-------e~ylkke~phKHli~vLNKvDLVPtw-vt~~Wv~~lSke 272 (572)
T KOG2423|consen 201 KRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHV-------EEYLKKEKPHKHLIYVLNKVDLVPTW-VTAKWVRHLSKE 272 (572)
T ss_pred hHHHHHHHHhhcccceeEEeeeccCCcccccHHH-------HHHHhhcCCcceeEEEeeccccccHH-HHHHHHHHHhhh
Confidence 455566643 455668999999842 33333333 2345678887 7899999999743 2233332 1
Q ss_pred cHH-HHHHHhhhcchh-HHHHHHHHHHHHhhccCC--eeEEEeeccCcccHHHHHHH
Q 026584 159 ESQ-FLLSELNQHMAP-QFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQ 211 (236)
Q Consensus 159 ~~~-~l~~~l~~~~~~-~~~~l~~~l~~li~d~~l--v~f~pls~~d~~~i~~L~~~ 211 (236)
.+. .+..+++..+++ ..-.|.+.++.+..|-.- |.|+-.-..-+.||.+-++.
T Consensus 273 yPTiAfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~ 329 (572)
T KOG2423|consen 273 YPTIAFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRK 329 (572)
T ss_pred CcceeeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhh
Confidence 111 122445555543 223566666677655443 78888888888888776653
No 352
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.58 E-value=34 Score=33.46 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=37.5
Q ss_pred CCCEEEEeCCCceeeeeccch-HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPV-LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
+.++++|||+| -.|++. +...+..+.......-.++++|+..-.+--. . .....-..+ ..=.|+||+|
T Consensus 334 d~d~VLIDTaG----r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~---~---i~~~f~~~~-~~g~IlTKlD 402 (484)
T PRK06995 334 NKHIVLIDTIG----MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN---E---VVQAYRGPG-LAGCILTKLD 402 (484)
T ss_pred CCCeEEeCCCC----cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH---H---HHHHhccCC-CCEEEEeCCC
Confidence 45799999999 334443 2233344432222333667788765331111 1 111112233 3445799999
Q ss_pred cccchh
Q 026584 145 LVTNKK 150 (236)
Q Consensus 145 Ll~~~~ 150 (236)
=..+.+
T Consensus 403 et~~~G 408 (484)
T PRK06995 403 EAASLG 408 (484)
T ss_pred Ccccch
Confidence 765443
No 353
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=61.15 E-value=52 Score=31.32 Aligned_cols=102 Identities=21% Similarity=0.265 Sum_probs=53.6
Q ss_pred EEEecCCCCCCCCCC---CccccccCcCHHHH-------HhhcCC-CChHHHHHHHHHHHHhhHHHHHHHhcccC--CCC
Q 026584 2 HIVNLDPAAENFDYP---VAMDIRELISLEDV-------MEELGL-GPNGGLIYCMEHLEDNLDDWLAEELDNYL--DDD 68 (236)
Q Consensus 2 ~iVNLDPa~e~~~Y~---~~iDIrd~i~~~dv-------M~~~~L-GPNGalv~~me~l~~n~~~wl~~~i~~~~--~~~ 68 (236)
..|||||+.-.+-.+ ..+=|..++++.|= .-.+|+ -||+-+.-=-..+ +.+-+-+..++..-+ +..
T Consensus 135 lfv~LDvgQ~sitiPGsiaA~~i~~~~D~~eGf~l~~pLV~~FG~~sp~~N~~LY~~~~-s~La~v~~~~~~~n~~ar~s 213 (415)
T KOG2749|consen 135 LFVELDVGQGSITIPGSIAAIPIEMPLDVIEGFSLTAPLVYNFGLTSPSTNLELYKALV-SELAEVLKQRLSLNPEARVS 213 (415)
T ss_pred eEEEcCCCCCceecccchhheecccccchhhCcccCCceeeeccCCCCCcCHHHHHHHH-HHHHHHHHHHhccCchhccc
Confidence 479999999744332 23445555544221 113454 5666654322222 222244444554321 346
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCC
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 110 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~ 110 (236)
-.||||+|-++ ..--..++...++ ++..+|.++|.-
T Consensus 214 G~iInT~g~i~----~egy~~llhai~~--f~v~vviVLg~E 249 (415)
T KOG2749|consen 214 GCIINTCGWIE----GEGYAALLHAIKA--FEVDVVIVLGQE 249 (415)
T ss_pred ceEEeccceec----cccHHHHHHHHHH--cCccEEEEeccH
Confidence 79999999776 2222334554433 455677777764
No 354
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=61.14 E-value=15 Score=35.74 Aligned_cols=48 Identities=10% Similarity=0.204 Sum_probs=31.1
Q ss_pred CceEEEEee-cCCCcc-chhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 99 FNVCAVYLL-DSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 99 ~~~~~V~Li-D~~~~~-dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
+..+++.++ |++... ...+|+.+=.--..-+-..+.|+|.|+||+|-.
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 445667777 885332 122344444444566777999999999999943
No 355
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=59.36 E-value=21 Score=35.90 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=46.8
Q ss_pred CEEEEeCCCceeeeec---cchHHHHHHHHh--hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584 68 DYLVFDCPGQIELFTH---VPVLRNFVDHLK--SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~---~~~~~~iv~~L~--~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
.-+++|.||-|-.-|. ++.-..|++.-+ -.+=+.+++.+-|+..=...+..- -+ .|.|--+|.-+|.||+|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVT-DL---Vsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVT-DL---VSQMDPHGRRTIFVLTK 488 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHH-HH---HHhcCCCCCeeEEEEee
Confidence 3699999998876652 222222332222 134455666666766544333321 11 34566789999999999
Q ss_pred cccccc
Q 026584 143 MDLVTN 148 (236)
Q Consensus 143 ~DLl~~ 148 (236)
+||...
T Consensus 489 VDlAEk 494 (980)
T KOG0447|consen 489 VDLAEK 494 (980)
T ss_pred cchhhh
Confidence 999864
No 356
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=59.12 E-value=42 Score=30.21 Aligned_cols=98 Identities=16% Similarity=0.319 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhcccCC-CCEEEEeCCCce---------------eeeec--c-----chHHHHHHHHh-
Q 026584 40 GGLIYCMEHLEDNLDDWLAEELDNYLD-DDYLVFDCPGQI---------------ELFTH--V-----PVLRNFVDHLK- 95 (236)
Q Consensus 40 Galv~~me~l~~n~~~wl~~~i~~~~~-~~Yil~D~PGQi---------------Elf~~--~-----~~~~~iv~~L~- 95 (236)
-|++.++++|.+. +.+.+ -+|+++|-+|-+ |+|.- . -..++|.+-++
T Consensus 99 RGVitai~~Le~l---------gaf~~~~DvviyDVLGDVVCGGFAmPiReg~AdeiyIVtSge~MalYAANNI~kgi~k 169 (278)
T COG1348 99 RGVITAINLLEEL---------GAFEEDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEMMALYAANNIAKGIRK 169 (278)
T ss_pred chHHHHHHHHHHh---------CCccccCCEEEEeccCceeecceeeehhcccCcEEEEEecCchHHHHHHHHHHHHHHH
Confidence 4789999887554 33322 378999988865 45521 1 12344555543
Q ss_pred ---hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccccc
Q 026584 96 ---SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 147 (236)
Q Consensus 96 ---~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~ 147 (236)
+.+.|+..+ +--++...+-..++..+--.+.+.+-..+|..|++.|+-+-+
T Consensus 170 ~a~~~~~rLgGi-IcNsr~~~~e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~~ 223 (278)
T COG1348 170 YAKTGGVRLGGI-ICNSRSVDRERELVEAFAERLGTQLIHFVPRDNIVQKAELNG 223 (278)
T ss_pred HhhcCCcceeeE-EecCCCcccHHHHHHHHHHHhCCceEeeccchHHHHHHHHcC
Confidence 345666555 455666667777777766666666666778888888776643
No 357
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=58.61 E-value=27 Score=31.42 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=29.8
Q ss_pred HHHHHHhcc--cCCCCEEEEeCCCceeeeecc--chHHHHHHHHhhCCCceEEEEeecCC
Q 026584 55 DWLAEELDN--YLDDDYLVFDCPGQIELFTHV--PVLRNFVDHLKSRNFNVCAVYLLDSQ 110 (236)
Q Consensus 55 ~wl~~~i~~--~~~~~Yil~D~PGQiElf~~~--~~~~~iv~~L~~~~~~~~~V~LiD~~ 110 (236)
+|+.+..+. ....++.++|+||-++= .|. ..+++++..++. .. +.++++|+.
T Consensus 48 ~~l~~~~~~~k~~~~~i~lvD~pGl~~~-a~~~~glg~~fL~~i~~--~D-~li~VV~~f 103 (274)
T cd01900 48 DKLAEIVKPKKIVPATIEFVDIAGLVKG-ASKGEGLGNKFLSHIRE--VD-AIAHVVRCF 103 (274)
T ss_pred hhHHHHhCCceeeeeEEEEEECCCcCCC-CchhhHHHHHHHHHHHh--CC-EEEEEEeCc
Confidence 555544332 11335899999994432 222 234566666643 33 589999974
No 358
>PRK10037 cell division protein; Provisional
Probab=58.45 E-value=8.3 Score=33.52 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=16.1
Q ss_pred HHHHHhcccC---CCCEEEEeCCCcee
Q 026584 56 WLAEELDNYL---DDDYLVFDCPGQIE 79 (236)
Q Consensus 56 wl~~~i~~~~---~~~Yil~D~PGQiE 79 (236)
++.+.++... +-+|+|||||+.+.
T Consensus 104 ~l~~~l~~l~~~~~yD~iiIDtpp~~~ 130 (250)
T PRK10037 104 DICSALQQLKASGRYQWILLDLPRGAS 130 (250)
T ss_pred HHHHHHHHhcccCCCCEEEEECCCCcc
Confidence 3444444442 45899999999765
No 359
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.37 E-value=46 Score=31.88 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=10.7
Q ss_pred CCCEEEEeCCCce
Q 026584 66 DDDYLVFDCPGQI 78 (236)
Q Consensus 66 ~~~Yil~D~PGQi 78 (236)
..+||||||||..
T Consensus 285 ~~D~VLIDTAGr~ 297 (407)
T PRK12726 285 CVDHILIDTVGRN 297 (407)
T ss_pred CCCEEEEECCCCC
Confidence 4589999999953
No 360
>KOG2484 consensus GTPase [General function prediction only]
Probab=58.32 E-value=12 Score=35.82 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=32.2
Q ss_pred eEEEEeecCCC-----ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhcc
Q 026584 101 VCAVYLLDSQF-----ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLN 157 (236)
Q Consensus 101 ~~~V~LiD~~~-----~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~ 157 (236)
=|+++++||.- |.+-..-+. ...=+--.|.||||+||++++ .+++|+.
T Consensus 148 DVVleVlDARDPlgtR~~~vE~~V~--------~~~gnKkLILVLNK~DLVPrE-v~e~Wl~ 200 (435)
T KOG2484|consen 148 DVVLEVLDARDPLGTRCPEVEEAVL--------QAHGNKKLILVLNKIDLVPRE-VVEKWLV 200 (435)
T ss_pred heEEEeeeccCCCCCCChhHHHHHH--------hccCCceEEEEeehhccCCHH-HHHHHHH
Confidence 37999999843 333333331 111237789999999999987 6777665
No 361
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=57.87 E-value=20 Score=33.77 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=15.1
Q ss_pred HHHHhcccC-CCCEEEEeCCCceee
Q 026584 57 LAEELDNYL-DDDYLVFDCPGQIEL 80 (236)
Q Consensus 57 l~~~i~~~~-~~~Yil~D~PGQiEl 80 (236)
+.+.++... +-+|||||||+.+..
T Consensus 224 L~~~l~~l~~~YD~IiIDtpP~l~~ 248 (388)
T PRK13705 224 LRLAIETVAHDYDVIVIDSAPNLGI 248 (388)
T ss_pred HHHHHHhhhccCCEEEEECCCchhH
Confidence 444444431 347899999996553
No 362
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=57.80 E-value=13 Score=35.83 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=26.2
Q ss_pred HHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCCC
Q 026584 30 VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPG 76 (236)
Q Consensus 30 vM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PG 76 (236)
|---|.+||+|+.++ +|+.++..+..-.. ...|.-+|||-
T Consensus 27 ~~g~~d~~P~G~~l~------~~i~~~~r~~~~~~-~~~~~ev~tp~ 66 (456)
T PRK04173 27 LAGFWDYGPLGVELK------NNIKRAWWKSFVQE-REDVVGIDSPI 66 (456)
T ss_pred hhcccccChhhHHHH------HHHHHHHHHHHHhc-cCCEEEEeccc
Confidence 444578999998765 55656555443322 35799999994
No 363
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=57.59 E-value=9.2 Score=33.64 Aligned_cols=22 Identities=41% Similarity=0.770 Sum_probs=14.0
Q ss_pred HHHHhcccC-CCCEEEEeCCCce
Q 026584 57 LAEELDNYL-DDDYLVFDCPGQI 78 (236)
Q Consensus 57 l~~~i~~~~-~~~Yil~D~PGQi 78 (236)
+.+.+.... +-+|+||||||-+
T Consensus 106 l~~~l~~~~~~yD~vlID~~~~~ 128 (273)
T PRK13232 106 LLENLGAYTDDLDYVFYDVLGDV 128 (273)
T ss_pred HHHHcccccccCCEEEEecCCCe
Confidence 334444331 3489999999965
No 364
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=56.78 E-value=20 Score=31.61 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=37.9
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHh-hCCCceEEEEeecCCCccchhhHH
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFI 119 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~-~~~~~~~~V~LiD~~~~~dp~~~i 119 (236)
+.+|++.|-|=-===-.|+-.+.+++++|. +.+ +.+++.|=|-.|++.-++.+
T Consensus 153 dTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~-KtiviVlHDINfAS~YsD~I 206 (252)
T COG4604 153 DTDYVLLDEPLNNLDMKHSVQIMKILRRLADELG-KTIVVVLHDINFASCYSDHI 206 (252)
T ss_pred cCcEEEecCcccccchHHHHHHHHHHHHHHHHhC-CeEEEEEecccHHHhhhhhe
Confidence 568999999952211257777888888886 454 45678888988877666655
No 365
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=56.38 E-value=15 Score=34.65 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=16.1
Q ss_pred hhcCCCEEEEeccccccc
Q 026584 130 VQLELPHVNILSKMDLVT 147 (236)
Q Consensus 130 ~~l~lP~InVlsK~DLl~ 147 (236)
-++|+|++.|.+|||+++
T Consensus 219 ~NlGi~vlVV~TK~D~~s 236 (473)
T KOG3905|consen 219 HNLGIPVLVVCTKCDAVS 236 (473)
T ss_pred hcCCCcEEEEEeccchhh
Confidence 458999999999999975
No 366
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=56.25 E-value=28 Score=31.46 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=10.6
Q ss_pred CCCEEEEeCCCce
Q 026584 66 DDDYLVFDCPGQI 78 (236)
Q Consensus 66 ~~~Yil~D~PGQi 78 (236)
.-+|+|+|||+..
T Consensus 204 ~~D~VIID~p~~~ 216 (322)
T TIGR03815 204 GGDLVVVDLPRRL 216 (322)
T ss_pred cCCEEEEeCCCCC
Confidence 3489999999954
No 367
>PHA02518 ParA-like protein; Provisional
Probab=55.97 E-value=12 Score=30.85 Aligned_cols=13 Identities=38% Similarity=0.396 Sum_probs=10.8
Q ss_pred CCCEEEEeCCCce
Q 026584 66 DDDYLVFDCPGQI 78 (236)
Q Consensus 66 ~~~Yil~D~PGQi 78 (236)
..+|+||||||..
T Consensus 76 ~~d~viiD~p~~~ 88 (211)
T PHA02518 76 GYDYVVVDGAPQD 88 (211)
T ss_pred cCCEEEEeCCCCc
Confidence 4589999999964
No 368
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=55.76 E-value=9 Score=34.15 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=17.7
Q ss_pred HHHHHHhcccCCCCEEEEeCCCcee
Q 026584 55 DWLAEELDNYLDDDYLVFDCPGQIE 79 (236)
Q Consensus 55 ~wl~~~i~~~~~~~Yil~D~PGQiE 79 (236)
+++.+++... .-+|+|+|||--||
T Consensus 103 ~~vv~eL~~~-~fDyIi~DsPAGIE 126 (272)
T COG2894 103 KKVVNELKAM-DFDYIIIDSPAGIE 126 (272)
T ss_pred HHHHHHHHhc-CCCEEEecCcchHH
Confidence 4455555542 45899999999999
No 369
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=55.60 E-value=9.2 Score=37.08 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=40.7
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
.=+|||||.+.+-. ...+-++-| +. +|-++|++.--.|..+- .| .---++.+|.+..+||+|.+..
T Consensus 104 inlidtpghvdf~l---everclrvl---dg---avav~dasagve~qtlt-vw----rqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 104 INLIDTPGHVDFRL---EVERCLRVL---DG---AVAVFDASAGVEAQTLT-VW----RQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EeeecCCCcceEEE---EHHHHHHHh---cC---eEEEEeccCCcccceee-ee----hhccccCCchhhhhhhhhhhhh
Confidence 46899999888433 344544555 22 34457876544444321 11 1223589999999999998753
No 370
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=54.35 E-value=23 Score=30.74 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=22.0
Q ss_pred CeeEEEeeccCcccHHHHHHHHHHh
Q 026584 191 MVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 191 lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
-..|+..|.+++++++.++..|...
T Consensus 175 ~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 175 EAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred CCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 3799999999999999999988653
No 371
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=53.91 E-value=25 Score=32.91 Aligned_cols=83 Identities=20% Similarity=0.307 Sum_probs=41.2
Q ss_pred hcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHH---Hhhcc----C-CeeE-EEeeccC
Q 026584 131 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE---LVDEY----S-MVSF-MPLDLRK 201 (236)
Q Consensus 131 ~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~---li~d~----~-lv~f-~pls~~d 201 (236)
|--.|.+.|+||+|+.+.+ ++....... .++.-+.+ .+-...+|-+.|-+ ++.=| + ...| -|+=...
T Consensus 237 rvY~p~l~v~NKiD~~~~e-~~~~l~~~~-~~v~isa~--~~~nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~ 312 (365)
T COG1163 237 RVYKPALYVVNKIDLPGLE-ELERLARKP-NSVPISAK--KGINLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRR 312 (365)
T ss_pred ceeeeeEEEEecccccCHH-HHHHHHhcc-ceEEEecc--cCCCHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeC
Confidence 4589999999999999844 443322100 00000000 00011222222222 12111 1 1344 6777777
Q ss_pred cccHHHHHHHHHHhhc
Q 026584 202 ESSIRYVLSQIDNCIQ 217 (236)
Q Consensus 202 ~~~i~~L~~~Id~~~~ 217 (236)
+.++.++.+.|.+.+-
T Consensus 313 GsTV~Dvc~~IH~~l~ 328 (365)
T COG1163 313 GSTVGDVCRKIHRDLV 328 (365)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 7777777777777654
No 372
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=50.96 E-value=19 Score=32.57 Aligned_cols=127 Identities=19% Similarity=0.235 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCCC--ceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccc
Q 026584 37 GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPG--QIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD 114 (236)
Q Consensus 37 GPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PG--QiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~d 114 (236)
|-.||+-.+.--...- ++.. .-++||+-|-| |.|+ +-. +. ..++++.+.... .|
T Consensus 101 G~lGGls~~t~~~v~l--------l~aa-G~D~IiiETVGvGQsE~-----------~I~-~~-aD~~v~v~~Pg~--GD 156 (266)
T PF03308_consen 101 GSLGGLSRATRDAVRL--------LDAA-GFDVIIIETVGVGQSEV-----------DIA-DM-ADTVVLVLVPGL--GD 156 (266)
T ss_dssp SSHHHHHHHHHHHHHH--------HHHT-T-SEEEEEEESSSTHHH-----------HHH-TT-SSEEEEEEESST--CC
T ss_pred CCCCCccHhHHHHHHH--------HHHc-CCCEEEEeCCCCCccHH-----------HHH-Hh-cCeEEEEecCCC--cc
Confidence 6678887666433222 2223 55899999986 8772 112 21 234444444331 11
Q ss_pred hhhHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhcc--CC-
Q 026584 115 VTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SM- 191 (236)
Q Consensus 115 p~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~--~l- 191 (236)
.-..+-+- -+|++-|.|+||+|.-..+ .. ++.+ +.+.++...- +.
T Consensus 157 ~iQ~~KaG--------imEiaDi~vVNKaD~~gA~-~~----------------------~~~l-~~~l~l~~~~~~~W~ 204 (266)
T PF03308_consen 157 EIQAIKAG--------IMEIADIFVVNKADRPGAD-RT----------------------VRDL-RSMLHLLREREDGWR 204 (266)
T ss_dssp CCCTB-TT--------HHHH-SEEEEE--SHHHHH-HH----------------------HHHH-HHHHHHCSTSCTSB-
T ss_pred HHHHHhhh--------hhhhccEEEEeCCChHHHH-HH----------------------HHHH-HHHHhhccccccCCC
Confidence 11111100 0588999999999953222 00 1111 1222333221 22
Q ss_pred eeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584 192 VSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 192 v~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
...+..++..++++++|...|++...|-
T Consensus 205 ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 205 PPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp -EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 5889999999999999999999987764
No 373
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=50.86 E-value=7.1 Score=30.37 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.7
Q ss_pred CCCEEEEeCCCcee
Q 026584 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
..+|+++|||+-+|
T Consensus 86 ~~~~vivDt~ag~e 99 (116)
T cd02034 86 RDEQVVVDTEAGLE 99 (116)
T ss_pred CCCEEEEecHHHHH
Confidence 45799999999776
No 374
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=50.56 E-value=1.4e+02 Score=24.61 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=35.3
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE-Eecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN-ILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In-VlsK~D 144 (236)
+.+|||||||. +....+ . .++-. ..+ .++.++++...+. ..+..++...-+.+.+.+- |+||++
T Consensus 127 ~yD~ViiD~pp---~~~~~~-~-~~~~~--~~D---~vilV~~~~~~~~-----~~~~~~~~~l~~~~~~~~gvVlN~~~ 191 (204)
T TIGR01007 127 YFDYIIIDTPP---IGTVTD-A-AIIAR--ACD---ASILVTDAGEIKK-----RDVQKAKEQLEQTGSNFLGVVLNKVD 191 (204)
T ss_pred cCCEEEEeCCC---ccccch-H-HHHHH--hCC---eEEEEEECCCCCH-----HHHHHHHHHHHhCCCCEEEEEEeCcc
Confidence 45899999997 222111 1 11111 123 3555666543321 2233345555667888665 589998
Q ss_pred cc
Q 026584 145 LV 146 (236)
Q Consensus 145 Ll 146 (236)
.-
T Consensus 192 ~~ 193 (204)
T TIGR01007 192 IS 193 (204)
T ss_pred cc
Confidence 64
No 375
>COG1162 Predicted GTPases [General function prediction only]
Probab=49.17 E-value=42 Score=30.85 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=38.3
Q ss_pred HHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC--CeeEEEeeccCccc
Q 026584 127 SAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESS 204 (236)
Q Consensus 127 s~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~--lv~f~pls~~d~~~ 204 (236)
..--..++.-|.||||+||+... +... + +....|. .+..+-+|+++.++
T Consensus 104 v~ae~~gi~pvIvlnK~DL~~~~-~~~~-------------------------~---~~~~~y~~~gy~v~~~s~~~~~~ 154 (301)
T COG1162 104 VLAEAGGIEPVIVLNKIDLLDDE-EAAV-------------------------K---ELLREYEDIGYPVLFVSAKNGDG 154 (301)
T ss_pred HHHHHcCCcEEEEEEccccCcch-HHHH-------------------------H---HHHHHHHhCCeeEEEecCcCccc
Confidence 33445799999999999998765 1110 0 1111222 16677788888888
Q ss_pred HHHHHHHHHH
Q 026584 205 IRYVLSQIDN 214 (236)
Q Consensus 205 i~~L~~~Id~ 214 (236)
++.|...+..
T Consensus 155 ~~~l~~~l~~ 164 (301)
T COG1162 155 LEELAELLAG 164 (301)
T ss_pred HHHHHHHhcC
Confidence 8888877654
No 376
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=48.79 E-value=1.4e+02 Score=23.81 Aligned_cols=64 Identities=11% Similarity=0.226 Sum_probs=35.8
Q ss_pred CCCEEEEeCCCcee-eeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEE
Q 026584 66 DDDYLVFDCPGQIE-LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 139 (236)
Q Consensus 66 ~~~Yil~D~PGQiE-lf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InV 139 (236)
+.+|+|+|+||... -....-....+++.+ +.+ ++.++++.. .. ++....+...+-+.++|.+-|
T Consensus 99 ~~D~viid~~g~~~~~~~~~~~~~dl~~~~---~~~--vilV~~~~~----~~-~~~~~~~~~~l~~~~~~i~gv 163 (166)
T TIGR00347 99 KYDFVLVEGAGGLCVPITEEYTTADLIKLL---QLP--VILVVRVKL----GT-INHTLLTVEHARQTGLTLAGV 163 (166)
T ss_pred cCCEEEEEcCCccccCCCCCCcHHHHHHHh---CCC--EEEEECCCC----cH-HHHHHHHHHHHHHCCCCeEEE
Confidence 56899999998532 111111333444444 444 455555432 33 555666666666678887655
No 377
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.28 E-value=86 Score=30.09 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=39.2
Q ss_pred CCCEEEEeCCCceeeeeccch-HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPV-LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~-~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
+.+.++|||+| ..+++. ...-+..|.....+.-.+.++++..-.+--.=+ ....-.+++ .=.|+||.|
T Consensus 269 ~~d~VLIDTaG----rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~------~~~f~~~~~-~~~I~TKlD 337 (420)
T PRK14721 269 GKHMVLIDTVG----MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV------ISAYQGHGI-HGCIITKVD 337 (420)
T ss_pred CCCEEEecCCC----CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH------HHHhcCCCC-CEEEEEeee
Confidence 55789999999 555543 222333332222233456778877533221111 111112333 334789999
Q ss_pred cccchhH
Q 026584 145 LVTNKKE 151 (236)
Q Consensus 145 Ll~~~~~ 151 (236)
=..+.+.
T Consensus 338 Et~~~G~ 344 (420)
T PRK14721 338 EAASLGI 344 (420)
T ss_pred CCCCccH
Confidence 8766543
No 378
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.25 E-value=1.4e+02 Score=24.93 Aligned_cols=116 Identities=12% Similarity=0.180 Sum_probs=64.8
Q ss_pred EEEeCCCc-eeeeeccchHHHHHHHHhhCCCc--eEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 70 LVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN--VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 70 il~D~PGQ-iElf~~~~~~~~iv~~L~~~~~~--~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
-||...|| |-|..|...+..-++...+.-+| .-++.+-|-..-+ .-+-+|++|.-...+-+-..-.+.+-||.||-
T Consensus 51 riievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrs-tynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 51 RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred eEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhh-hhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 45666666 56667777777666666432122 2244444543322 23347778766665555555556667999985
Q ss_pred cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHH
Q 026584 147 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 213 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id 213 (236)
... +. . + ++. + ++.+ -+-+-|.--|+++++++++-+-...
T Consensus 130 ~qr-dv----~----y--eea--------k-------~fae-engl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 130 SQR-DV----T----Y--EEA--------K-------EFAE-ENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred hcc-cC----c----H--HHH--------H-------HHHh-hcCeEEEEecccccCcHHHHHHHHH
Confidence 432 11 0 0 000 0 1222 3346788899999999987654443
No 379
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.14 E-value=55 Score=31.49 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=45.0
Q ss_pred CCEEEEeCCCceeeeeccc-h---HHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584 67 DDYLVFDCPGQIELFTHVP-V---LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~-~---~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
++--||||||-.+-=..+- - ....++-.... .. .++.|+|++. .|.++-.+.++-+ +-..+-..=.||||
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR-~D-~IiLlfD~hK-LDIsdEf~~vi~a---LkG~EdkiRVVLNK 220 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAER-VD-RIILLFDAHK-LDISDEFKRVIDA---LKGHEDKIRVVLNK 220 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHh-cc-EEEEEechhh-ccccHHHHHHHHH---hhCCcceeEEEecc
Confidence 4578999999665432211 1 22233333221 22 3677889764 3555556655433 33456666678999
Q ss_pred cccccch
Q 026584 143 MDLVTNK 149 (236)
Q Consensus 143 ~DLl~~~ 149 (236)
+|.++..
T Consensus 221 ADqVdtq 227 (532)
T KOG1954|consen 221 ADQVDTQ 227 (532)
T ss_pred ccccCHH
Confidence 9999766
No 380
>PRK13236 nitrogenase reductase; Reviewed
Probab=48.07 E-value=21 Score=32.09 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=11.0
Q ss_pred CEEEecCCCCCCCC
Q 026584 1 MHIVNLDPAAENFD 14 (236)
Q Consensus 1 ~~iVNLDPa~e~~~ 14 (236)
|.+|.+||...+.+
T Consensus 37 VLliD~D~q~~~~~ 50 (296)
T PRK13236 37 ILIVGCDPKADSTR 50 (296)
T ss_pred EEEEEccCCCCccc
Confidence 57899999986554
No 381
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=47.61 E-value=15 Score=30.26 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=42.7
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHh-hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~-~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
+.+|+|+=+.|-.+.... +.. -..+. ..... .+|.++|+..+......- ....-.+..-.+.|+||+|
T Consensus 84 ~~d~IiIE~sG~a~p~~l---~~~-~~~~~~~~~~~-~iI~vVDa~~~~~~~~~~------~~~~~Qi~~ADvIvlnK~D 152 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPL---ILQ-DPPLKEDFRLD-SIITVVDATNFDELENIP------ELLREQIAFADVIVLNKID 152 (178)
T ss_dssp C-SEEEEEEECSSGGGGH---HHH-SHHHHHHESES-EEEEEEEGTTHGGHTTHC------HHHHHHHCT-SEEEEE-GG
T ss_pred CcCEEEECCccccccchh---hhc-ccccccccccc-ceeEEeccccccccccch------hhhhhcchhcCEEEEeccc
Confidence 468999999994433322 111 22232 23343 478899997774433321 2234457889999999999
Q ss_pred cccch
Q 026584 145 LVTNK 149 (236)
Q Consensus 145 Ll~~~ 149 (236)
+++..
T Consensus 153 ~~~~~ 157 (178)
T PF02492_consen 153 LVSDE 157 (178)
T ss_dssp GHHHH
T ss_pred cCChh
Confidence 98765
No 382
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.80 E-value=2e+02 Score=24.92 Aligned_cols=116 Identities=19% Similarity=0.308 Sum_probs=66.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE---Eecccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN---ILSKMD 144 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In---VlsK~D 144 (236)
++.|-||-||-= |. ...+.- -+|.. +++.+.| +++..+|.-+--+---..-+.. |.++ |=||+|
T Consensus 55 kfeIWDTAGQER-y~--slapMY-----yRgA~-AAivvYD---it~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~D 121 (200)
T KOG0092|consen 55 KFEIWDTAGQER-YH--SLAPMY-----YRGAN-AAIVVYD---ITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKAD 121 (200)
T ss_pred EEEEEEcCCccc-cc--ccccce-----ecCCc-EEEEEEe---cccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhh
Confidence 578999999865 32 222221 13444 4555566 4555666544333333333334 5444 459999
Q ss_pred cccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcccccCC
Q 026584 145 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDAD 223 (236)
Q Consensus 145 Ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ed~~ 223 (236)
|.... +... +....|. ++ .-..|.-.|++++.+++.|+..|-+-+.-.+..+
T Consensus 122 L~~~R-~V~~---------------~ea~~yA----------e~-~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~ 173 (200)
T KOG0092|consen 122 LLERR-EVEF---------------EEAQAYA----------ES-QGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQE 173 (200)
T ss_pred hhhcc-cccH---------------HHHHHHH----------Hh-cCCEEEEEecccccCHHHHHHHHHHhccCccccc
Confidence 98633 1110 0001111 11 2367888999999999999999988766544433
No 383
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=45.43 E-value=48 Score=30.66 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHh----hCCCce-EEEEeecCCCcc------chhh------------HHHHH
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK----SRNFNV-CAVYLLDSQFIT------DVTK------------FISGC 122 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~----~~~~~~-~~V~LiD~~~~~------dp~~------------~is~~ 122 (236)
+.+||++-|.|--+ - ..|++.+. +..+++ .+|.++|+..+. +|.. +-..
T Consensus 92 ~~d~IvIEtsG~a~---P----~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 163 (341)
T TIGR02475 92 RPDHILIETSGLAL---P----KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETP- 163 (341)
T ss_pred CCCEEEEeCCCCCC---H----HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccch-
Confidence 56899999999432 1 22333331 111221 478899997553 1111 0000
Q ss_pred HHHHHHHhhcCCCEEEEecccccccch
Q 026584 123 MASLSAMVQLELPHVNILSKMDLVTNK 149 (236)
Q Consensus 123 l~sls~m~~l~lP~InVlsK~DLl~~~ 149 (236)
+.-...-.++.--+.|+||+|+++..
T Consensus 164 -~~~~~~~Qi~~AD~IvlnK~Dl~~~~ 189 (341)
T TIGR02475 164 -LEELFEDQLACADLVILNKADLLDAA 189 (341)
T ss_pred -HHHHHHHHHHhCCEEEEeccccCCHH
Confidence 01111234566788999999999764
No 384
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=44.78 E-value=17 Score=32.51 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=12.4
Q ss_pred HhcccCCCCEEEEeCCC
Q 026584 60 ELDNYLDDDYLVFDCPG 76 (236)
Q Consensus 60 ~i~~~~~~~Yil~D~PG 76 (236)
.++.+.+.++|||||||
T Consensus 266 ~l~~~~~~d~vliDt~G 282 (282)
T TIGR03499 266 ALDRLRDKDLILIDTAG 282 (282)
T ss_pred HHHHccCCCEEEEeCCC
Confidence 34444356899999999
No 385
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=44.11 E-value=94 Score=29.30 Aligned_cols=59 Identities=22% Similarity=0.394 Sum_probs=38.7
Q ss_pred HHHHHHHhhHHHHHHHhcccCCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc
Q 026584 45 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 113 (236)
Q Consensus 45 ~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~ 113 (236)
-+-.+...+ +-+.+.+.....+-.|+||.|| |. -++.+++++.+.+.=+||-+-.+.|.
T Consensus 63 ~l~~~~~~~-~~~~~~~~~~~pd~vIlID~pg----FN-----lrlak~lk~~~~~~~viyYI~PqvWA 121 (373)
T PF02684_consen 63 KLPKLKRLF-RKLVERIKEEKPDVVILIDYPG----FN-----LRLAKKLKKRGIPIKVIYYISPQVWA 121 (373)
T ss_pred HHHHHHHHH-HHHHHHHHHcCCCEEEEeCCCC----cc-----HHHHHHHHHhCCCceEEEEECCceee
Confidence 333444444 3334444444466789999999 76 47788888777764367878777775
No 386
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=44.08 E-value=33 Score=32.30 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=25.9
Q ss_pred CCEEEEeCCCceeeeecc--chHHHHHHHHhhCCCceEEEEeecCC
Q 026584 67 DDYLVFDCPGQIELFTHV--PVLRNFVDHLKSRNFNVCAVYLLDSQ 110 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~--~~~~~iv~~L~~~~~~~~~V~LiD~~ 110 (236)
.++.++|+||-++= .|. ..++++++.++. .. +.+|++|+.
T Consensus 66 a~i~lvD~pGL~~~-a~~g~glg~~fL~~i~~--aD-~li~VVd~f 107 (364)
T PRK09601 66 ATIEFVDIAGLVKG-ASKGEGLGNQFLANIRE--VD-AIVHVVRCF 107 (364)
T ss_pred ceEEEEECCCCCCC-CChHHHHHHHHHHHHHh--CC-EEEEEEeCC
Confidence 46899999995431 222 234566666643 34 589999985
No 387
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=43.84 E-value=75 Score=30.73 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=35.7
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecC-CCccchhhHHH
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS-QFITDVTKFIS 120 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~-~~~~dp~~~is 120 (236)
.+.+||||- .-+++++|++.+.+...+ ++.|+.+. ..+.+...|+.
T Consensus 61 vl~ldTPGG-----l~~sm~~iv~~i~~s~vP-V~~yv~p~ga~AaSAGtyI~ 107 (436)
T COG1030 61 VLELDTPGG-----LLDSMRQIVRAILNSPVP-VIGYVVPDGARAASAGTYIL 107 (436)
T ss_pred EEEecCCCc-----hHHHHHHHHHHHHcCCCC-EEEEEcCCCcchhchhhHHH
Confidence 578999994 467899999999877777 57777776 45777777773
No 388
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=43.53 E-value=19 Score=31.35 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=10.2
Q ss_pred CCEEEEeCCCce
Q 026584 67 DDYLVFDCPGQI 78 (236)
Q Consensus 67 ~~Yil~D~PGQi 78 (236)
-+|+||||||.+
T Consensus 114 yD~ViIDt~~~~ 125 (264)
T PRK13231 114 IDVVIYDVLGDV 125 (264)
T ss_pred CCEEEEecCCCc
Confidence 489999999965
No 389
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.27 E-value=1.6e+02 Score=24.78 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=38.7
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh----cCCCEEEEeccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ----LELPHVNILSKM 143 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~----l~lP~InVlsK~ 143 (236)
+-=|+||.||-- |. .| ..+.-.+. ...+.+.|. ++.++|-| +..-+++++ .+.|+|.|-|||
T Consensus 71 klQiwDTagqEr-yr------ti-TTayyRga-mgfiLmyDi---tNeeSf~s--vqdw~tqIktysw~naqvilvgnKC 136 (193)
T KOG0093|consen 71 KLQIWDTAGQER-YR------TI-TTAYYRGA-MGFILMYDI---TNEESFNS--VQDWITQIKTYSWDNAQVILVGNKC 136 (193)
T ss_pred EEEEEecccchh-hh------HH-HHHHhhcc-ceEEEEEec---CCHHHHHH--HHHHHHHheeeeccCceEEEEeccc
Confidence 356889998743 22 22 22221221 234555664 45555544 444555555 689999999999
Q ss_pred cccc
Q 026584 144 DLVT 147 (236)
Q Consensus 144 DLl~ 147 (236)
|+-+
T Consensus 137 Dmd~ 140 (193)
T KOG0093|consen 137 DMDS 140 (193)
T ss_pred CCcc
Confidence 9954
No 390
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=42.99 E-value=63 Score=29.61 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=41.8
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHH--HHHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFV--DHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 142 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv--~~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK 142 (236)
+.++|+|-|.|-.+ -.+.+..+. ..+.. .... .+|.++|+..+..--. .. . ..+-.+..--+.|+||
T Consensus 90 ~~d~IvIEttG~a~---p~~i~~~~~~~~~l~~~~~l~-~vvtvvDa~~~~~~~~---~~--~-~~~~Qi~~AD~IvlnK 159 (318)
T PRK11537 90 QFDRLVIECTGMAD---PGPIIQTFFSHEVLCQRYLLD-GVIALVDAVHADEQMN---QF--T-IAQSQVGYADRILLTK 159 (318)
T ss_pred CCCEEEEECCCccC---HHHHHHHHhcChhhcccEEec-cEEEEEEhhhhhhhcc---cc--H-HHHHHHHhCCEEEEec
Confidence 46899999999433 222233321 12211 1112 3788899976543211 10 1 1234567788999999
Q ss_pred cccccch
Q 026584 143 MDLVTNK 149 (236)
Q Consensus 143 ~DLl~~~ 149 (236)
+|+++..
T Consensus 160 ~Dl~~~~ 166 (318)
T PRK11537 160 TDVAGEA 166 (318)
T ss_pred cccCCHH
Confidence 9998754
No 391
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=42.46 E-value=24 Score=34.16 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 110 QFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 110 ~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
..|.|..+|+..+-....-+++-|-|-+++.+|+=|
T Consensus 410 ~~w~d~~dfle~La~k~GkLlKGGEPd~~~vsKmvL 445 (572)
T KOG2423|consen 410 SGWNDSTDFLEKLAIKQGKLLKGGEPDLVVVSKMVL 445 (572)
T ss_pred CccccHHHHHHHHHHHhCccccCCCCchhHHHHHHh
Confidence 357888888888777777788888899999888854
No 392
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=42.39 E-value=59 Score=29.96 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=30.1
Q ss_pred CCEEEEeCCCceeee-eccchHHHHHHHHhhCCCceEEEEeecCC
Q 026584 67 DDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQ 110 (236)
Q Consensus 67 ~~Yil~D~PGQiElf-~~~~~~~~iv~~L~~~~~~~~~V~LiD~~ 110 (236)
-++|||||+|-+=.- .+-+-....+++|++.+.+ ++|+..-.
T Consensus 22 ~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~--i~fvTNNS 64 (306)
T KOG2882|consen 22 FDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQ--IIFVTNNS 64 (306)
T ss_pred cCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCc--EEEEeCCC
Confidence 379999999965443 4556677889999877743 57777644
No 393
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=41.11 E-value=2.7e+02 Score=27.05 Aligned_cols=133 Identities=16% Similarity=0.213 Sum_probs=72.7
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCC---CccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ---FITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~---~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
--++|..| |+..++.-+..|... ..-++..++-|. .|+.... +....-|++|+..+++|+||
T Consensus 251 vTfiDLAG------h~kY~~TTi~gLtgY-~Ph~A~LvVsA~~Gi~~tTrEH--------Lgl~~AL~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 251 VTFIDLAG------HAKYQKTTIHGLTGY-TPHFACLVVSADRGITWTTREH--------LGLIAALNIPFFVLVTKMDL 315 (591)
T ss_pred EEEeeccc------chhhheeeeeecccC-CCceEEEEEEcCCCCccccHHH--------HHHHHHhCCCeEEEEEeecc
Confidence 56789988 566666666667532 112344444442 2444444 33344589999999999999
Q ss_pred ccchhHhhhhccccHHHHHHHhhh-cchh---HHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQ-HMAP---QFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~-~~~~---~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
..+. .+++-.. +...|+...-- +.+. .-.+-.++--+ ...-+.+...-+|.-.++++.-|-..+.-.-+.+
T Consensus 316 ~~~~-~~~~tv~-~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~ 390 (591)
T KOG1143|consen 316 VDRQ-GLKKTVK-DLSNLLAKAGCTKVPKRVTTKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAG 390 (591)
T ss_pred ccch-hHHHHHH-HHHHHHhhcCccccceEeechHHHHHHHHH-hccCCceeEEEEeecCccchhHHHHHHhhcCCcC
Confidence 9874 3333222 22222221110 0000 01112222222 3344568999999999999987776665544444
No 394
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=41.06 E-value=2.2e+02 Score=24.00 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=60.8
Q ss_pred EEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH--HHHHHHHHh-hcCCCEEEEeccccc
Q 026584 69 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG--CMASLSAMV-QLELPHVNILSKMDL 145 (236)
Q Consensus 69 Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~--~l~sls~m~-~l~lP~InVlsK~DL 145 (236)
-.+.|.|||-- .+..-++.- .+.+ +.||++||.- |.+.-.+ =|-++..-- -.++|.+..-||.|+
T Consensus 67 iklwD~gGq~r-------frsmWeryc-R~v~-aivY~VDaad---~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~ 134 (186)
T KOG0075|consen 67 IKLWDLGGQPR-------FRSMWERYC-RGVS-AIVYVVDAAD---PDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDL 134 (186)
T ss_pred EEEEecCCCcc-------HHHHHHHHh-hcCc-EEEEEeecCC---cccchhhHHHHHHHhcchhhcCCcEEEecccccC
Confidence 57899999853 233344443 2455 5899999854 3332211 111111111 148898888899998
Q ss_pred ccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccC-CeeEEEeeccCcccHHHHHHHHHH
Q 026584 146 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 146 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~-lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
-.. |. ...|.+++. +.+=.+ -++-..+|.++..+|+-+.+.+=+
T Consensus 135 ~~A---L~------~~~li~rmg----------------L~sitdREvcC~siScke~~Nid~~~~Wli~ 179 (186)
T KOG0075|consen 135 PGA---LS------KIALIERMG----------------LSSITDREVCCFSISCKEKVNIDITLDWLIE 179 (186)
T ss_pred ccc---cc------HHHHHHHhC----------------ccccccceEEEEEEEEcCCccHHHHHHHHHH
Confidence 432 11 011111111 000011 177888999999999998887644
No 395
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=40.89 E-value=58 Score=28.16 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=34.1
Q ss_pred chHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccc
Q 026584 85 PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 144 (236)
Q Consensus 85 ~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~D 144 (236)
..++-+++.|++...+. -+.++|++-+.+|..+=.++-+++. +++|.|=|-.|.=
T Consensus 74 RE~P~~l~~l~~l~~~~-dvilvDG~G~~HpR~~GlA~HlGv~----l~iPtIGVAK~~l 128 (206)
T PF04493_consen 74 RELPCILEALEKLKNKP-DVILVDGHGILHPRRFGLASHLGVL----LDIPTIGVAKSLL 128 (206)
T ss_dssp GTHHHHHHHHHTSSS---SCEEEES-SSSSTTS--HHHHHHHH----HTS-EEEEESS-T
T ss_pred hhHHHHHHHHHHhcccC-CEEEEeCceeecCCCcChhheeeec----cCCCEEEEeCccc
Confidence 34566677776544332 3778999999999988665555444 5999999977653
No 396
>PTZ00258 GTP-binding protein; Provisional
Probab=40.13 E-value=50 Score=31.37 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=26.1
Q ss_pred CCEEEEeCCCceeeee-ccchHHHHHHHHhhCCCceEEEEeecCC
Q 026584 67 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQ 110 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~-~~~~~~~iv~~L~~~~~~~~~V~LiD~~ 110 (236)
.++.++||||-++=-. ....++++++.++.. . +++|++|+.
T Consensus 85 aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~a--D-~il~VVd~f 126 (390)
T PTZ00258 85 AQLDITDIAGLVKGASEGEGLGNAFLSHIRAV--D-GIYHVVRAF 126 (390)
T ss_pred CCeEEEECCCcCcCCcchhHHHHHHHHHHHHC--C-EEEEEEeCC
Confidence 4589999999553211 112455667776443 3 589999984
No 397
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=40.02 E-value=17 Score=27.37 Aligned_cols=13 Identities=38% Similarity=0.738 Sum_probs=10.6
Q ss_pred CCEEEEeCCCcee
Q 026584 67 DDYLVFDCPGQIE 79 (236)
Q Consensus 67 ~~Yil~D~PGQiE 79 (236)
.+|+|||||+.+.
T Consensus 43 ~D~IIiDtpp~~~ 55 (106)
T cd03111 43 DDYVVVDLGRSLD 55 (106)
T ss_pred CCEEEEeCCCCcC
Confidence 4899999999553
No 398
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=39.90 E-value=1.1e+02 Score=28.81 Aligned_cols=134 Identities=13% Similarity=0.227 Sum_probs=67.3
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCc---cchhhHHHHHHHHHHH---Hhh----cCCC
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI---TDVTKFISGCMASLSA---MVQ----LELP 135 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~---~dp~~~is~~l~sls~---m~~----l~lP 135 (236)
+-++-+||.+|| +..-++.+... .+.. +++|++..+-- .-......-+.-|+.. +++ .+.+
T Consensus 194 ~~~f~~~DvGGQ------RseRrKWihcF--e~v~-aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ts 264 (354)
T KOG0082|consen 194 GLKFRMFDVGGQ------RSERKKWIHCF--EDVT-AVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTS 264 (354)
T ss_pred CCceEEEeCCCc------HHHhhhHHHhh--cCCC-EEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCc
Confidence 446889999995 44555555555 2454 57887765321 1111112112222211 111 4799
Q ss_pred EEEEecccccccchh---Hhhhhccc--cHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHH
Q 026584 136 HVNILSKMDLVTNKK---EIEDYLNP--ESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 210 (236)
Q Consensus 136 ~InVlsK~DLl~~~~---~l~~~l~~--~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~ 210 (236)
.|..|||.||+..+- .+..++.. +.... ++...-...+|.++++.-. -.+..... .|+|-++|..++.
T Consensus 265 iiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~-~~a~~yI~~kF~~l~~~~~-----k~iy~h~T-~AtDT~nv~~vf~ 337 (354)
T KOG0082|consen 265 IILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTY-EEAAKYIRKKFEELNKNKD-----KKIYVHFT-CATDTQNVQFVFD 337 (354)
T ss_pred EEEEeecHHHHHHHhccCchhhhCcCCCCCCCh-HHHHHHHHHHHHHHhcccC-----CcceEEEE-eeccHHHHHHHHH
Confidence 999999999986431 12222221 11110 1111111123444433221 22333333 9999999999988
Q ss_pred HHHHh
Q 026584 211 QIDNC 215 (236)
Q Consensus 211 ~Id~~ 215 (236)
++-..
T Consensus 338 av~d~ 342 (354)
T KOG0082|consen 338 AVTDT 342 (354)
T ss_pred HHHHH
Confidence 76543
No 399
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=39.55 E-value=26 Score=30.78 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=10.3
Q ss_pred CCCEEEEeCCCce
Q 026584 66 DDDYLVFDCPGQI 78 (236)
Q Consensus 66 ~~~Yil~D~PGQi 78 (236)
+-+|+||||||.+
T Consensus 117 ~yD~ilID~~~~~ 129 (274)
T PRK13235 117 NLDYVFYDVLGDV 129 (274)
T ss_pred CCCEEEEECCCCC
Confidence 3489999999843
No 400
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=39.13 E-value=25 Score=30.77 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=13.0
Q ss_pred HHHhcccC-CCCEEEEeCCCc
Q 026584 58 AEELDNYL-DDDYLVFDCPGQ 77 (236)
Q Consensus 58 ~~~i~~~~-~~~Yil~D~PGQ 77 (236)
.+.+.... +-+|+||||||.
T Consensus 109 ~~~l~~~~~~yD~iliD~~~~ 129 (275)
T PRK13233 109 MEENGAYTDDLDFVFFDVLGD 129 (275)
T ss_pred HHHcCCccCCCCEEEEecCCc
Confidence 34444442 348999999994
No 401
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=39.10 E-value=28 Score=31.04 Aligned_cols=61 Identities=16% Similarity=0.340 Sum_probs=38.1
Q ss_pred HHHHHHHHhh----CCCceEEEEeecCCCccch----------hhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 87 LRNFVDHLKS----RNFNVCAVYLLDSQFITDV----------TKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 87 ~~~iv~~L~~----~~~~~~~V~LiD~~~~~dp----------~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
-..+++.|++ .-.+ -+|..+|+.-.... ..-+=.-|.-+...+...+|+..|+||||++.-
T Consensus 10 W~~~L~lL~~~R~r~Pln-Gvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~G 84 (266)
T PF14331_consen 10 WQAFLDLLRRHRPRQPLN-GVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPG 84 (266)
T ss_pred HHHHHHHHHhcCCCCCCC-EEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccC
Confidence 4567777752 2233 24445665432222 333444556677777889999999999999964
No 402
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=38.58 E-value=18 Score=31.49 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=11.5
Q ss_pred CCCEEEEeCCCcee
Q 026584 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
+-+|+||||||.+.
T Consensus 115 ~yD~ViID~~~~~~ 128 (268)
T TIGR01281 115 DYDVILFDVLGDVV 128 (268)
T ss_pred cCCEEEEecCCccc
Confidence 45899999999664
No 403
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=38.53 E-value=2.5e+02 Score=24.03 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=43.3
Q ss_pred ccchhhHHHHHHHHHHHHhhcCCCEEEE----ecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhh
Q 026584 112 ITDVTKFISGCMASLSAMVQLELPHVNI----LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD 187 (236)
Q Consensus 112 ~~dp~~~is~~l~sls~m~~l~lP~InV----lsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~ 187 (236)
+++..+|=-.-.+-.-+.+.++-|+=.| -.|+||.+.. +... +...+ +.
T Consensus 91 itnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR-qVt~---------------EEaEk-----------lA 143 (213)
T KOG0091|consen 91 ITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR-QVTA---------------EEAEK-----------LA 143 (213)
T ss_pred ccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc-cccH---------------HHHHH-----------HH
Confidence 4455555333333344555566666544 4999997654 2210 01011 12
Q ss_pred ccCCeeEEEeeccCcccHHHHHHHHHH
Q 026584 188 EYSMVSFMPLDLRKESSIRYVLSQIDN 214 (236)
Q Consensus 188 d~~lv~f~pls~~d~~~i~~L~~~Id~ 214 (236)
.+--..|+--|++++.+++.-+.++-.
T Consensus 144 a~hgM~FVETSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 144 ASHGMAFVETSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred HhcCceEEEecccCCCcHHHHHHHHHH
Confidence 223368999999999999987766644
No 404
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=37.91 E-value=3e+02 Score=24.58 Aligned_cols=125 Identities=20% Similarity=0.346 Sum_probs=62.5
Q ss_pred CEEEecCCCCCCCC----CCCccc-----cccCcCHHHHHhhcC-CC----ChHHHHHHHHHHH-HhhHHHHHHHhcccC
Q 026584 1 MHIVNLDPAAENFD----YPVAMD-----IRELISLEDVMEELG-LG----PNGGLIYCMEHLE-DNLDDWLAEELDNYL 65 (236)
Q Consensus 1 ~~iVNLDPa~e~~~----Y~~~iD-----Ird~i~~~dvM~~~~-LG----PNGalv~~me~l~-~n~~~wl~~~i~~~~ 65 (236)
|.+|++|++--++. -.+.-- +.+--+++|+.-+.. -| |-|.-...+-.+. +.. .-+.+++...
T Consensus 35 V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~gl~vipg~~~~~~~~~~~~~~~-~~~~~~l~~~- 112 (262)
T COG0455 35 VLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDGLYVLPGGSGLEDLAKLDPEDL-EDVIKELEEL- 112 (262)
T ss_pred EEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCCEEEeeCCCChHHHhhcCHHHH-HHHHHHHHhc-
Confidence 46889999876532 111111 222334555555443 22 4444444432222 333 2234455554
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEE---EEecc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV---NILSK 142 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~I---nVlsK 142 (236)
.+|+++|||+-++ ...+..+...+ .+++|.=-+...+++. +...-...+.+.+.. .|+|+
T Consensus 113 -~D~iliD~~aGl~--------~~~~~~~~~sd-~~viVt~pe~~si~~A-------~~~i~~~~~~~~~~~~~~vV~N~ 175 (262)
T COG0455 113 -YDYILIDTGAGLS--------RDTLSFILSSD-ELVIVTTPEPTSITDA-------YKTIKILSKLGLDLLGRRVVLNR 175 (262)
T ss_pred -CCEEEEeCCCCcc--------HHHHHHHHhcC-cEEEEeCCCcchHHHH-------HHHHHHHHHcCCccccceEEEEe
Confidence 3899999999765 23333343333 3455544444444332 223344455566643 67898
Q ss_pred cc
Q 026584 143 MD 144 (236)
Q Consensus 143 ~D 144 (236)
++
T Consensus 176 v~ 177 (262)
T COG0455 176 VR 177 (262)
T ss_pred cc
Confidence 87
No 405
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=37.21 E-value=20 Score=31.33 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=11.3
Q ss_pred CCCEEEEeCCCcee
Q 026584 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
+-+|+||||||.+.
T Consensus 117 ~yD~viIDt~g~~~ 130 (270)
T PRK13185 117 DYDVILFDVLGDVV 130 (270)
T ss_pred cCCEEEEecCCCcc
Confidence 45899999999654
No 406
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=36.85 E-value=74 Score=31.04 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.9
Q ss_pred hhcCCCEEEEeccccccc
Q 026584 130 VQLELPHVNILSKMDLVT 147 (236)
Q Consensus 130 ~~l~lP~InVlsK~DLl~ 147 (236)
-+||+|.+.|.+|+|.+.
T Consensus 193 ~nlGipi~VV~tksD~~~ 210 (472)
T PF05783_consen 193 ENLGIPIVVVCTKSDKIE 210 (472)
T ss_pred cccCcceEEEEecccHHH
Confidence 468999999999999874
No 407
>PF13479 AAA_24: AAA domain
Probab=36.45 E-value=77 Score=26.90 Aligned_cols=52 Identities=25% Similarity=0.396 Sum_probs=34.7
Q ss_pred EEEecCCCCCCCCCC---CccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCCCce
Q 026584 2 HIVNLDPAAENFDYP---VAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQI 78 (236)
Q Consensus 2 ~iVNLDPa~e~~~Y~---~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~PGQi 78 (236)
.+++.|.+...++.- +.++|+ +.+++++ -+ +|+.+.... -+.|+||+=+++
T Consensus 27 l~id~E~g~~~~~~~~~~~~i~i~---s~~~~~~-------------------~~-~~l~~~~~~---y~tiVIDsis~~ 80 (213)
T PF13479_consen 27 LFIDTENGSDSLKFLDDGDVIPIT---SWEDFLE-------------------AL-DELEEDEAD---YDTIVIDSISWL 80 (213)
T ss_pred EEEEeCCCccchhhhcCCCeeCcC---CHHHHHH-------------------HH-HHHHhccCC---CCEEEEECHHHH
Confidence 578889987655543 345555 6666666 45 676655333 378999998877
Q ss_pred e
Q 026584 79 E 79 (236)
Q Consensus 79 E 79 (236)
|
T Consensus 81 ~ 81 (213)
T PF13479_consen 81 E 81 (213)
T ss_pred H
Confidence 5
No 408
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=36.45 E-value=22 Score=26.02 Aligned_cols=12 Identities=33% Similarity=0.827 Sum_probs=10.0
Q ss_pred CCEEEEeCCCce
Q 026584 67 DDYLVFDCPGQI 78 (236)
Q Consensus 67 ~~Yil~D~PGQi 78 (236)
.+|+||||||..
T Consensus 40 ~d~viiD~p~~~ 51 (104)
T cd02042 40 YDYIIIDTPPSL 51 (104)
T ss_pred CCEEEEeCcCCC
Confidence 479999999954
No 409
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=36.44 E-value=20 Score=31.57 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=10.6
Q ss_pred CCCEEEEeCCCce
Q 026584 66 DDDYLVFDCPGQI 78 (236)
Q Consensus 66 ~~~Yil~D~PGQi 78 (236)
+-+|+||||||..
T Consensus 116 ~yD~viID~~~~~ 128 (279)
T PRK13230 116 GPDVVIYDILGDV 128 (279)
T ss_pred CCCEEEEecCCcc
Confidence 4589999999954
No 410
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=36.24 E-value=14 Score=33.22 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=27.2
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHH---Hhh--CCCceEEEEeecCCCccchhhHH
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDH---LKS--RNFNVCAVYLLDSQFITDVTKFI 119 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~---L~~--~~~~~~~V~LiD~~~~~dp~~~i 119 (236)
..+++||||..|+..+.-....+.+. +.. ...+ .-||.+...|.=.+
T Consensus 214 ~~~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~~~~C~-----F~~C~H~~Ep~Cav 265 (287)
T cd01854 214 GGLLIDTPGFREFGLLHIDPEELAHYFPEFRELAGQCK-----FRDCTHTNEPGCAV 265 (287)
T ss_pred CCEEEECCCCCccCCccCCHHHHHHHhHHHHHHhCCCC-----CCCCcCCCCCCCHH
Confidence 56899999999877333333333333 322 2222 35777777776443
No 411
>PRK09602 translation-associated GTPase; Reviewed
Probab=35.54 E-value=52 Score=31.16 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=26.5
Q ss_pred EEEEeCCCceeee-eccchHHHHHHHHhhCCCceEEEEeecCC
Q 026584 69 YLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQ 110 (236)
Q Consensus 69 Yil~D~PGQiElf-~~~~~~~~iv~~L~~~~~~~~~V~LiD~~ 110 (236)
.-++|+||.++=- ..+..++++++.++.. . +.++++|+.
T Consensus 74 i~i~D~aGl~~ga~~g~glg~~fL~~ir~a--d-~ll~Vvd~~ 113 (396)
T PRK09602 74 VELIDVAGLVPGAHEGRGLGNQFLDDLRQA--D-ALIHVVDAS 113 (396)
T ss_pred EEEEEcCCcCCCccchhhHHHHHHHHHHHC--C-EEEEEEeCC
Confidence 4599999976522 2334566777777543 3 589999986
No 412
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=35.35 E-value=32 Score=30.89 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=10.0
Q ss_pred CCCEEEEeCCCc
Q 026584 66 DDDYLVFDCPGQ 77 (236)
Q Consensus 66 ~~~Yil~D~PGQ 77 (236)
+-+|+||||||-
T Consensus 115 ~yD~IiIDt~~~ 126 (290)
T CHL00072 115 EYDIILFDVLGD 126 (290)
T ss_pred cCCEEEEecCCc
Confidence 348999999985
No 413
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=35.18 E-value=2.6e+02 Score=23.85 Aligned_cols=70 Identities=27% Similarity=0.393 Sum_probs=46.0
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhH--HHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~--is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
..+.-|-||.||--+.+--+.- -.+.+ -++.+.| ++|..+| +-+|..-+-.|+--++-.+.|-||+
T Consensus 61 ra~L~IWDTAGQErfHALGPIY--------YRgSn-GalLVyD---ITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKi 128 (218)
T KOG0088|consen 61 RADLHIWDTAGQERFHALGPIY--------YRGSN-GALLVYD---ITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKI 128 (218)
T ss_pred eeeeeeeeccchHhhhccCceE--------EeCCC-ceEEEEe---ccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcc
Confidence 3467899999986533322221 11222 2344445 4454444 6778888999999999999999999
Q ss_pred cccc
Q 026584 144 DLVT 147 (236)
Q Consensus 144 DLl~ 147 (236)
||-+
T Consensus 129 DLEe 132 (218)
T KOG0088|consen 129 DLEE 132 (218)
T ss_pred cHHH
Confidence 9954
No 414
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=34.77 E-value=45 Score=27.46 Aligned_cols=41 Identities=29% Similarity=0.415 Sum_probs=34.2
Q ss_pred CCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 026584 12 NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNL 53 (236)
Q Consensus 12 ~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~ 53 (236)
.+-|+..++=.|-.-..-+++.+| ||+|-+-.+|.|+.+.+
T Consensus 7 ~l~~~v~v~~p~p~~A~~l~~~~g-G~~gEl~ai~qYl~q~~ 47 (156)
T cd01051 7 KLQYPVRVDKPDPRFAKLLQEQLG-GAFGELSAAMQYLFQSF 47 (156)
T ss_pred cccccCCCCCCCHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 345777778888777778888888 99999999999998866
No 415
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=34.77 E-value=22 Score=31.11 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhccCCeeEEEeeccCcccHH
Q 026584 175 FAKLNKSLIELVDEYSMVSFMPLDLRKESSIR 206 (236)
Q Consensus 175 ~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~ 206 (236)
|+++.++ +++...+.++-|+...+-+++-
T Consensus 237 ~~~la~e---ll~~~~~~~~~~~~~~~~~~~~ 265 (275)
T TIGR01287 237 YRELAKK---IYENTEFVIPTPLTMDELEEIL 265 (275)
T ss_pred HHHHHHH---HHhcCCCCCCCCCCHHHHHHHH
Confidence 4444443 4455566777887776665554
No 416
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=33.48 E-value=28 Score=29.28 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=10.6
Q ss_pred CCCEEEEeCCCce
Q 026584 66 DDDYLVFDCPGQI 78 (236)
Q Consensus 66 ~~~Yil~D~PGQi 78 (236)
+-+|+||||||..
T Consensus 116 ~yD~ilID~~g~~ 128 (212)
T cd02117 116 DLDVVLYDVLGDV 128 (212)
T ss_pred CCCEEEEecCCCc
Confidence 4589999999954
No 417
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=32.62 E-value=78 Score=26.83 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=31.5
Q ss_pred CCEEEEeCCCceeeeeccchHHH-HHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCE-EEEecccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRN-FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMD 144 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~-iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~-InVlsK~D 144 (236)
-+|||||||-. ...... +...+.... .-.++.++......- ...-.++..+-+.+.|. -.|+||+.
T Consensus 114 yD~IIiD~pp~------~~~~~~l~~~~l~~~~-~~~vllV~~p~~~s~-----~~~~~~l~~l~~~~~~~~glVlN~~~ 181 (217)
T cd02035 114 YDVIVFDTAPT------GHTLRLLVRELLTDPE-RTSFRLVTLPEKLPL-----YETERAITELALYGIPVDAVVVNRVL 181 (217)
T ss_pred CCEEEECCCCc------hHHHHHHHHHHccCCC-ceEEEEEeCCCccHH-----HHHHHHHHHHHHCCCCCCEEEEeCCc
Confidence 58999999962 111111 334442211 123455555443211 11112234444566664 45578886
Q ss_pred c
Q 026584 145 L 145 (236)
Q Consensus 145 L 145 (236)
.
T Consensus 182 ~ 182 (217)
T cd02035 182 P 182 (217)
T ss_pred C
Confidence 4
No 418
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=32.47 E-value=26 Score=31.97 Aligned_cols=41 Identities=29% Similarity=0.458 Sum_probs=30.2
Q ss_pred CCCCCCccccccCcCHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 026584 12 NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNL 53 (236)
Q Consensus 12 ~~~Y~~~iDIrd~i~~~dvM~~~~LGPNGalv~~me~l~~n~ 53 (236)
.+.|++.++=.|-.-..-+++.+| ||+|-+-.+|.||.+.+
T Consensus 7 ~Lq~~v~v~~PDP~~A~~LqeqlG-G~~GElsaamqYl~Q~~ 47 (283)
T PF05067_consen 7 KLQYPVRVEKPDPRFAKLLQEQLG-GPFGELSAAMQYLFQSF 47 (283)
T ss_dssp CSSS----SS--HHHHHHHCHHHH-STTSHHHHHHHHHHHHH
T ss_pred cccCcCCCCCCCHHHHHHHHHHhc-CCcchHHHHHHHHHHhh
Confidence 467888888888888888888888 99999999999998865
No 419
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=32.47 E-value=57 Score=28.99 Aligned_cols=77 Identities=25% Similarity=0.456 Sum_probs=40.7
Q ss_pred CCCChHHHHHHHHHHHHhhHHHHHHHhcccCCCCE---EEEeCCCceee-ee-ccchHHHHHHHHhh--CCCceEEEEee
Q 026584 35 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDY---LVFDCPGQIEL-FT-HVPVLRNFVDHLKS--RNFNVCAVYLL 107 (236)
Q Consensus 35 ~LGPNGalv~~me~l~~n~~~wl~~~i~~~~~~~Y---il~D~PGQiEl-f~-~~~~~~~iv~~L~~--~~~~~~~V~Li 107 (236)
+||++|-. |.+.+ .|+.+++.+....+| +=||.=|-+=. |- ..+.+-..+.+|++ ..+. +++=
T Consensus 41 klG~~Ge~------L~eYv-~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~P~~---L~iE 110 (248)
T PF07476_consen 41 KLGPDGEK------LLEYV-KWLKDRIRELGDEDYRPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAAPFK---LRIE 110 (248)
T ss_dssp CC-TTSHH------HHHHH-HHHHHHHHHHSSTT---EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHTTS----EEEE
T ss_pred HhCcchHH------HHHHH-HHHHHHHHHhcCCCCCccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcCCCe---eeee
Confidence 79999965 44556 999999998866677 88998886542 21 22223334444442 3443 4433
Q ss_pred cCCCccchhhHHHH
Q 026584 108 DSQFITDVTKFISG 121 (236)
Q Consensus 108 D~~~~~dp~~~is~ 121 (236)
...-..+...-+-.
T Consensus 111 gP~d~g~r~~QI~~ 124 (248)
T PF07476_consen 111 GPMDAGSREAQIEA 124 (248)
T ss_dssp -SB--SSHHHHHHH
T ss_pred CCcCCCChHHHHHH
Confidence 33334455555543
No 420
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=32.46 E-value=3.4e+02 Score=23.64 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=13.9
Q ss_pred eeEEEeeccCcccHHHHHH
Q 026584 192 VSFMPLDLRKESSIRYVLS 210 (236)
Q Consensus 192 v~f~pls~~d~~~i~~L~~ 210 (236)
+--+|+-.....+++.|-.
T Consensus 233 i~~vp~~~~e~~g~~~L~~ 251 (254)
T cd00550 233 VAKLPLLPEEVVGLEKLEQ 251 (254)
T ss_pred EEEeecCCCCCCCHHHHHH
Confidence 4457888888888887753
No 421
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=31.56 E-value=68 Score=28.52 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=33.2
Q ss_pred HHHHHHHHhhHHHHHHHhcccC---CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCC
Q 026584 44 YCMEHLEDNLDDWLAEELDNYL---DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 111 (236)
Q Consensus 44 ~~me~l~~n~~~wl~~~i~~~~---~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~ 111 (236)
..++-+...- .|+.+.+.... +.++||||||=-.- ...+ ..+...+.- ++|..-|+.+
T Consensus 93 ~~~~~l~~~~-~~l~~~l~~l~~~~~~~~iliD~P~g~~-----~~~~---~al~~aD~v-L~V~~~Da~s 153 (243)
T PF06564_consen 93 EAFEQLAQDP-QWLARALAALKALGPYDWILIDTPPGPS-----PYTR---QALAAADLV-LVVVNPDAAS 153 (243)
T ss_pred HHHHHhhcCH-HHHHHHHHHHhccCCCCEEEEeCCCCCc-----HHHH---HHHHhCCeE-EEEeCCCHHH
Confidence 3444555565 78777777653 45799999997221 2222 234344553 4555566654
No 422
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=29.69 E-value=1.7e+02 Score=28.39 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=27.5
Q ss_pred CCCEEEEeCCCceeeeeccchHHHHHHHHh---hCCCceEEEEeecCCCccchhh
Q 026584 66 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK---SRNFNVCAVYLLDSQFITDVTK 117 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~~~~~iv~~L~---~~~~~~~~V~LiD~~~~~dp~~ 117 (236)
..+++|+||-|-.-+ + ..+++.++ +.-.+--+++++||..=.+..+
T Consensus 182 ~~DvvIvDTAGRl~i----d--e~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~ 230 (451)
T COG0541 182 GYDVVIVDTAGRLHI----D--EELMDELKEIKEVINPDETLLVVDAMIGQDAVN 230 (451)
T ss_pred CCCEEEEeCCCcccc----c--HHHHHHHHHHHhhcCCCeEEEEEecccchHHHH
Confidence 348999999995432 1 23444442 2112345899999976555444
No 423
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=28.33 E-value=1.2e+02 Score=30.44 Aligned_cols=61 Identities=15% Similarity=0.310 Sum_probs=36.5
Q ss_pred EEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 71 VFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 71 l~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
+||.||.+.+- ......|+-.+..+++|=.++..+... ...+-.. +. =.+.-+.|+||+|-
T Consensus 102 LIDSPGHVDFS------SEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA---~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 102 LIDSPGHVDFS------SEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQA---IA----ERIKPVLVMNKMDR 162 (842)
T ss_pred eccCCCcccch------hhhhheeEeccCcEEEEEccCceEech-HHHHHHH---HH----hhccceEEeehhhH
Confidence 69999977633 234445542345577777777665443 3333321 22 34556778999995
No 424
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=28.29 E-value=1.4e+02 Score=27.90 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=39.1
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccc
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 148 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~ 148 (236)
-.=++||.+- ..++.|-++|.. .. |++-+=||.-=..-...+..- .++ ..|+|.|+||+||...
T Consensus 25 ~~~wfpgHma-----kalr~i~~~l~~--~D-~iiEvrDaRiPLssrn~~~~~------~~~-~k~riiVlNK~DLad~ 88 (335)
T KOG2485|consen 25 PRRWFPGHMA-----KALRAIQNRLPL--VD-CIIEVRDARIPLSSRNELFQD------FLP-PKPRIIVLNKMDLADP 88 (335)
T ss_pred ccccCchHHH-----HHHHHHHhhccc--cc-EEEEeeccccCCccccHHHHH------hcC-CCceEEEEecccccCc
Confidence 5667888431 234444444422 33 688888987644434433211 122 8899999999999974
No 425
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=27.78 E-value=53 Score=29.61 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=11.0
Q ss_pred CCCEEEEeCCCcee
Q 026584 66 DDDYLVFDCPGQIE 79 (236)
Q Consensus 66 ~~~Yil~D~PGQiE 79 (236)
+-+|+||||||.+.
T Consensus 122 ~yD~IliD~~~~~~ 135 (296)
T TIGR02016 122 DFDFVLMDFLGDVV 135 (296)
T ss_pred cCCEEEEecCCCcc
Confidence 45899999998653
No 426
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=27.38 E-value=35 Score=25.22 Aligned_cols=59 Identities=17% Similarity=0.306 Sum_probs=28.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHH-HHHHHHHHhhcCCCEEEEec
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG-CMASLSAMVQLELPHVNILS 141 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~-~l~sls~m~~l~lP~InVls 141 (236)
+|+|+|+|=- ..+.--.+++.+... . ++. .+.|+..-.. ..=+....-++++|.+-|+-
T Consensus 2 D~LiiD~PPG-----TgD~~l~~~~~~~~~--g--~iv------VTTPq~la~~dv~r~~~~~~~~~vpilGvVE 61 (81)
T PF10609_consen 2 DYLIIDLPPG-----TGDEHLTLMQYLPID--G--AIV------VTTPQELALADVRRAIDMFRKLNVPILGVVE 61 (81)
T ss_dssp CEEEEE--SC-----SSSHHHHHHHHH--S--E--EEE------EE-CCC--HHHHHHHHHHHHCTT-EEEEEEE
T ss_pred CEEEEeCCCC-----CCcHHHHHHHhCCCC--e--EEE------EeCCHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 6999999731 245555677777411 1 222 2334433222 22234555668999987653
No 427
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=27.35 E-value=98 Score=30.77 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=31.4
Q ss_pred hHHHHHHHHhhCCCceEEEEeecCCC-----ccchhhHHHHHHHHHHHHhhcCCCEEEEecccccccch
Q 026584 86 VLRNFVDHLKSRNFNVCAVYLLDSQF-----ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 149 (236)
Q Consensus 86 ~~~~iv~~L~~~~~~~~~V~LiD~~~-----~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~ 149 (236)
.-|.+=+-+.+.+ ++|.++|+.. +.|-..|+-. .--..-.+.++||+||+..+
T Consensus 164 ~WRQLWRVlErSD---ivvqIVDARnPllfr~~dLe~Yvke--------~d~~K~~~LLvNKaDLl~~~ 221 (562)
T KOG1424|consen 164 IWRQLWRVLERSD---IVVQIVDARNPLLFRSPDLEDYVKE--------VDPSKANVLLVNKADLLPPE 221 (562)
T ss_pred HHHHHHHHHhhcc---eEEEEeecCCccccCChhHHHHHhc--------cccccceEEEEehhhcCCHH
Confidence 3444555665444 5899999853 2333344421 11113348889999999876
No 428
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=26.30 E-value=2.3e+02 Score=24.99 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=27.0
Q ss_pred CceEEEEeecCCCccc--------hhhHHHHHHHHHHHHhhcCCCEEEEec
Q 026584 99 FNVCAVYLLDSQFITD--------VTKFISGCMASLSAMVQLELPHVNILS 141 (236)
Q Consensus 99 ~~~~~V~LiD~~~~~d--------p~~~is~~l~sls~m~~l~lP~InVls 141 (236)
+++=+|.|+|+.-+.- -...++.++.+++.+-+.+.|.|.|+.
T Consensus 65 f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~ 115 (238)
T TIGR03134 65 DKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIY 115 (238)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 4444677777644321 355566666677777777788888763
No 429
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=25.07 E-value=41 Score=30.19 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=9.9
Q ss_pred CCCEEEEeCCCc
Q 026584 66 DDDYLVFDCPGQ 77 (236)
Q Consensus 66 ~~~Yil~D~PGQ 77 (236)
+-+|+||||||.
T Consensus 119 ~yD~IlID~~~~ 130 (295)
T PRK13234 119 DVDYVSYDVLGD 130 (295)
T ss_pred cCCEEEEEcCCC
Confidence 348999999985
No 430
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=24.49 E-value=1.7e+02 Score=27.02 Aligned_cols=74 Identities=27% Similarity=0.390 Sum_probs=43.9
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHH--HHhh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVD--HLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~--~L~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
-+||+|=|-|--+ -.+.+..+.. .+.. .... .+|-++|+..+....+.++ --.+-.+..-=+.|+||+
T Consensus 85 ~D~ivIEtTGlA~---P~pv~~t~~~~~~l~~~~~ld-~vvtvVDa~~~~~~~~~~~-----~~~~~Qia~AD~ivlNK~ 155 (323)
T COG0523 85 PDRLVIETTGLAD---PAPVIQTFLTDPELADGVRLD-GVVTVVDAAHFLEGLDAIA-----ELAEDQLAFADVIVLNKT 155 (323)
T ss_pred CCEEEEeCCCCCC---CHHHHHHhccccccccceeec-eEEEEEeHHHhhhhHHHHH-----HHHHHHHHhCcEEEEecc
Confidence 5899999999333 1133333322 1211 1111 2677788876655444322 334556777889999999
Q ss_pred ccccch
Q 026584 144 DLVTNK 149 (236)
Q Consensus 144 DLl~~~ 149 (236)
||+...
T Consensus 156 Dlv~~~ 161 (323)
T COG0523 156 DLVDAE 161 (323)
T ss_pred cCCCHH
Confidence 999865
No 431
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=24.42 E-value=3.4e+02 Score=26.13 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=37.7
Q ss_pred HHhcccCCCCEEEEeCCCceeeeeccchHHHHHHHHh---hCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh-cCC
Q 026584 59 EELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK---SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-LEL 134 (236)
Q Consensus 59 ~~i~~~~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~---~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~-l~l 134 (236)
+.+..+.+.+.|||||-| -.+++... +..|+ ...++.-+-+++.+..-... + ...--.++ +++
T Consensus 274 ~ai~~l~~~d~ILVDTaG----rs~~D~~~--i~el~~~~~~~~~i~~~Lvlsat~K~~d---l----kei~~~f~~~~i 340 (407)
T COG1419 274 EAIEALRDCDVILVDTAG----RSQYDKEK--IEELKELIDVSHSIEVYLVLSATTKYED---L----KEIIKQFSLFPI 340 (407)
T ss_pred HHHHHhhcCCEEEEeCCC----CCccCHHH--HHHHHHHHhccccceEEEEEecCcchHH---H----HHHHHHhccCCc
Confidence 344444466899999999 45555432 33332 22334333334444332211 1 11112222 333
Q ss_pred CEEEEecccccccchh
Q 026584 135 PHVNILSKMDLVTNKK 150 (236)
Q Consensus 135 P~InVlsK~DLl~~~~ 150 (236)
-+ .++||.|=....|
T Consensus 341 ~~-~I~TKlDET~s~G 355 (407)
T COG1419 341 DG-LIFTKLDETTSLG 355 (407)
T ss_pred ce-eEEEcccccCchh
Confidence 33 3589999665544
No 432
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=24.29 E-value=1.9e+02 Score=29.19 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred EEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh---cCCCEEEEeccccccc
Q 026584 71 VFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ---LELPHVNILSKMDLVT 147 (236)
Q Consensus 71 l~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~---l~lP~InVlsK~DLl~ 147 (236)
|+||+ +..+.--.+.+.+++.+. .|.||=+|--.. -+-+|..-+-+.-..- .+.|+|.|=||+|+..
T Consensus 60 ivD~s------s~~~~~~~l~~EirkA~v-i~lvyavd~~~T---~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 60 IVDTS------SDSDDRLCLRKEIRKADV-ICLVYAVDDEST---VDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred EEecc------cccchhHHHHHHHhhcCE-EEEEEecCChHH---hhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Q ss_pred ch
Q 026584 148 NK 149 (236)
Q Consensus 148 ~~ 149 (236)
.+
T Consensus 130 ~~ 131 (625)
T KOG1707|consen 130 NE 131 (625)
T ss_pred cc
No 433
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=24.10 E-value=4.2e+02 Score=22.05 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=35.2
Q ss_pred CCCEEEEeCCCceeeeeccc-hHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEE-Eeccc
Q 026584 66 DDDYLVFDCPGQIELFTHVP-VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN-ILSKM 143 (236)
Q Consensus 66 ~~~Yil~D~PGQiElf~~~~-~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~In-VlsK~ 143 (236)
+.+|+|||+||.+.-=.... ..-.++. ..+.++ +.+.+.. ... ++..+.+....-+.+++..- |+|++
T Consensus 103 ~~D~viIEg~gg~~~~~~~~~~~adl~~---~l~~pv--ilV~~~~----~~~-i~~~~~~i~~l~~~~~~i~gvIlN~~ 172 (222)
T PRK00090 103 QYDLVLVEGAGGLLVPLTEDLTLADLAK---QLQLPV--ILVVGVK----LGC-INHTLLTLEAIRARGLPLAGWVANGI 172 (222)
T ss_pred hCCEEEEECCCceeccCCCCCcHHHHHH---HhCCCE--EEEECCC----CcH-HHHHHHHHHHHHHCCCCeEEEEEccC
Confidence 46899999999642111111 1222333 334543 3344432 222 44444444444455776643 57887
Q ss_pred cc
Q 026584 144 DL 145 (236)
Q Consensus 144 DL 145 (236)
+-
T Consensus 173 ~~ 174 (222)
T PRK00090 173 PP 174 (222)
T ss_pred CC
Confidence 64
No 434
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=23.70 E-value=85 Score=27.91 Aligned_cols=23 Identities=4% Similarity=0.218 Sum_probs=16.1
Q ss_pred HHHHHhhcCCCEEEE-eccccccc
Q 026584 125 SLSAMVQLELPHVNI-LSKMDLVT 147 (236)
Q Consensus 125 sls~m~~l~lP~InV-lsK~DLl~ 147 (236)
+....-+.+.|.+-| .|+.+...
T Consensus 210 a~~~~~~~~~~vlGvv~Nm~~~~~ 233 (265)
T COG0489 210 AIDMLEKAGIPVLGVVENMSYFIC 233 (265)
T ss_pred HHHHHHhcCCceEEEEecCccCcc
Confidence 355556688999877 68777654
No 435
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=23.56 E-value=1.4e+02 Score=27.83 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=35.1
Q ss_pred HHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhccc
Q 026584 178 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 219 (236)
Q Consensus 178 l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y~ 219 (236)
++++++++|..|+.-+|+++. .+.+++..|...+|..-..+
T Consensus 111 l~~Ai~diI~~~~Wr~~~~iY-d~d~gl~~Lq~L~~~~~~~~ 151 (372)
T cd06387 111 LKGAILSLLAHYKWEKFVYLY-DTERGFSILQAIMEAAVQNN 151 (372)
T ss_pred HHHHHHHHHHhcCCCEEEEEe-cCchhHHHHHHHHHhhccCC
Confidence 789999999999999999999 77889988888888654444
No 436
>PRK15219 carbonic anhydrase; Provisional
Probab=23.47 E-value=58 Score=28.95 Aligned_cols=20 Identities=5% Similarity=0.031 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEe
Q 026584 118 FISGCMASLSAMVQLELPHVNIL 140 (236)
Q Consensus 118 ~is~~l~sls~m~~l~lP~InVl 140 (236)
.++++-+++.. |+.|+|.|+
T Consensus 129 ~~~slEyAv~~---L~v~~IvVl 148 (245)
T PRK15219 129 LLGSMEFACAV---AGAKVVLVM 148 (245)
T ss_pred hhhHHHHHHHH---cCCCEEEEe
Confidence 34555444443 899999998
No 437
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=23.08 E-value=24 Score=31.10 Aligned_cols=7 Identities=71% Similarity=1.175 Sum_probs=5.3
Q ss_pred CCChHHH
Q 026584 36 LGPNGGL 42 (236)
Q Consensus 36 LGPNGal 42 (236)
||||||=
T Consensus 36 LGPNGAG 42 (243)
T COG1137 36 LGPNGAG 42 (243)
T ss_pred ECCCCCC
Confidence 7888863
No 438
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=23.06 E-value=3.3e+02 Score=24.89 Aligned_cols=73 Identities=22% Similarity=0.410 Sum_probs=45.5
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEecccccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 146 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DLl 146 (236)
.+++|+|+|-- ++.+.+ ..+. +... ++.+...+.+. ++-+..++-+.-++++|+..|+||.++-
T Consensus 164 ~~~~IIDsaaG----~gCpVi----~sl~--~aD~-ai~VTEPTp~g-----lhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 164 ADLLIIDSAAG----TGCPVI----ASLK--GADL-AILVTEPTPFG-----LHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred cceeEEecCCC----CCChHH----Hhhc--cCCE-EEEEecCCccc-----hhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 47899999852 455554 4453 3343 55555554332 2334445677788999999999999654
Q ss_pred cchhHhhhhcc
Q 026584 147 TNKKEIEDYLN 157 (236)
Q Consensus 147 ~~~~~l~~~l~ 157 (236)
.. ++++|..
T Consensus 228 ~s--~ie~~~~ 236 (284)
T COG1149 228 DS--EIEEYCE 236 (284)
T ss_pred ch--HHHHHHH
Confidence 33 4555544
No 439
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=22.53 E-value=90 Score=28.64 Aligned_cols=10 Identities=60% Similarity=1.046 Sum_probs=8.6
Q ss_pred CCCEEEEeCC
Q 026584 66 DDDYLVFDCP 75 (236)
Q Consensus 66 ~~~Yil~D~P 75 (236)
+-+|++||||
T Consensus 156 ~lDyLviDtP 165 (300)
T KOG3022|consen 156 ELDYLVIDTP 165 (300)
T ss_pred CcCEEEEeCC
Confidence 4589999998
No 440
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.37 E-value=3.1e+02 Score=21.00 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=35.0
Q ss_pred hcCCCChHHHHHHHHHHHHhhHHHHH------HHhc-----ccC-CCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCc
Q 026584 33 ELGLGPNGGLIYCMEHLEDNLDDWLA------EELD-----NYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN 100 (236)
Q Consensus 33 ~~~LGPNGalv~~me~l~~n~~~wl~------~~i~-----~~~-~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~ 100 (236)
-+|-|||.+......+-...+ .|+. ++.. ... +.-.|++...| ..++...++++.+++.+.+
T Consensus 18 ~~G~G~s~~~a~e~~~kl~e~-~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g-----~t~~~~~~~~~~~~~~~~~ 91 (153)
T cd05009 18 VLGRGPNYGTALEGALKLKET-SYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPED-----RLEEKLESLIKEVKARGAK 91 (153)
T ss_pred EEcCCCCHHHHHHHHHHHHHH-HhhcceeccHHHhccChhhhccCCCcEEEEecCC-----hhHHHHHHHHHHHHHcCCE
Confidence 368999999888776666555 4431 1111 111 23456677677 2233455677777655544
No 441
>PRK11670 antiporter inner membrane protein; Provisional
Probab=22.23 E-value=86 Score=29.33 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=14.8
Q ss_pred HHHHHHhhcCCCEEE-Eecccccc
Q 026584 124 ASLSAMVQLELPHVN-ILSKMDLV 146 (236)
Q Consensus 124 ~sls~m~~l~lP~In-VlsK~DLl 146 (236)
-++....+.++|.+- |+|+++..
T Consensus 259 ~~i~~~~~~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 259 KGIVMFEKVEVPVLGIVENMSMHI 282 (369)
T ss_pred HHHHHHhccCCCeEEEEEcCCccc
Confidence 334444567898875 47887654
No 442
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=22.15 E-value=1.7e+02 Score=27.13 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHhcccCCCCEEEEeCC--CceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchh
Q 026584 39 NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP--GQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT 116 (236)
Q Consensus 39 NGalv~~me~l~~n~~~wl~~~i~~~~~~~Yil~D~P--GQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~ 116 (236)
=||+-.+.--...-+ ... ..++|||-|= ||.|. .|++. -+ ++++.++. -..|+.
T Consensus 125 lGGlS~at~~~i~~l--------dAa-G~DvIIVETVGvGQsev--------~I~~~---aD--t~~~v~~p--g~GD~~ 180 (323)
T COG1703 125 LGGLSRATREAIKLL--------DAA-GYDVIIVETVGVGQSEV--------DIANM---AD--TFLVVMIP--GAGDDL 180 (323)
T ss_pred chhhhHHHHHHHHHH--------Hhc-CCCEEEEEecCCCcchh--------HHhhh---cc--eEEEEecC--CCCcHH
Confidence 366666554433222 233 5589999996 57662 22221 12 22232222 234444
Q ss_pred hHHHHHHHHHHHHhhcCCCEEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHh--hccC-C-e
Q 026584 117 KFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV--DEYS-M-V 192 (236)
Q Consensus 117 ~~is~~l~sls~m~~l~lP~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li--~d~~-l-v 192 (236)
.-+-.-+ +++-=|.|+||.|.-..+ .-++.|..++-..- .+.. . -
T Consensus 181 Q~iK~Gi--------mEiaDi~vINKaD~~~A~-----------------------~a~r~l~~al~~~~~~~~~~~W~p 229 (323)
T COG1703 181 QGIKAGI--------MEIADIIVINKADRKGAE-----------------------KAARELRSALDLLREVWRENGWRP 229 (323)
T ss_pred HHHHhhh--------hhhhheeeEeccChhhHH-----------------------HHHHHHHHHHHhhcccccccCCCC
Confidence 4333222 588889999999942221 11222222222221 2333 3 5
Q ss_pred eEEEeeccCcccHHHHHHHHHHhhccccc
Q 026584 193 SFMPLDLRKESSIRYVLSQIDNCIQWGED 221 (236)
Q Consensus 193 ~f~pls~~d~~~i~~L~~~Id~~~~y~ed 221 (236)
..+-.++..++++..|..+|....+|-+.
T Consensus 230 pv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 230 PVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred ceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999888543
No 443
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=21.97 E-value=2.7e+02 Score=26.43 Aligned_cols=102 Identities=13% Similarity=0.202 Sum_probs=58.1
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHH----hh-CCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCC-------
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHL----KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP------- 135 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L----~~-~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP------- 135 (236)
..++.||=|-| +--+ ..++... .. .... +.+++.|.+.= +...-.+.. +++|-.+++|
T Consensus 227 ~vlltDTvGFi---sdLP--~~LvaAF~ATLeeVaead-lllHvvDiShP-~ae~q~e~V---l~vL~~igv~~~pkl~~ 296 (410)
T KOG0410|consen 227 FVLLTDTVGFI---SDLP--IQLVAAFQATLEEVAEAD-LLLHVVDISHP-NAEEQRETV---LHVLNQIGVPSEPKLQN 296 (410)
T ss_pred EEEEeechhhh---hhCc--HHHHHHHHHHHHHHhhcc-eEEEEeecCCc-cHHHHHHHH---HHHHHhcCCCcHHHHhH
Confidence 47889999922 2222 1233333 21 2233 58999997542 222223333 5677778887
Q ss_pred EEEEecccccccchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHh
Q 026584 136 HVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 215 (236)
Q Consensus 136 ~InVlsK~DLl~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~ 215 (236)
.|-|=||+|.-+.+ .+ . +.++ -+++|+..++++++++.+++..
T Consensus 297 mieVdnkiD~e~~~------~e-------------~---------------E~n~---~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 297 MIEVDNKIDYEEDE------VE-------------E---------------EKNL---DVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred HHhhcccccccccc------Cc-------------c---------------ccCC---ccccccccCccHHHHHHHHHHH
Confidence 34455666664332 00 0 1222 5788888999999998888875
Q ss_pred h
Q 026584 216 I 216 (236)
Q Consensus 216 ~ 216 (236)
.
T Consensus 340 v 340 (410)
T KOG0410|consen 340 V 340 (410)
T ss_pred h
Confidence 3
No 444
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=21.50 E-value=1.4e+02 Score=26.73 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhccCCeeEEEeeccCcccHHHHHHHHHHhhcc
Q 026584 177 KLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 218 (236)
Q Consensus 177 ~l~~~l~~li~d~~lv~f~pls~~d~~~i~~L~~~Id~~~~y 218 (236)
+|-+++.++.++.+.--.+|.++++.++|+.++..|-+..|-
T Consensus 43 ~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g~ 84 (259)
T COG0623 43 RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKWGK 84 (259)
T ss_pred HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhhCc
Confidence 677777788888887778999999999999999999987664
No 445
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=21.41 E-value=5.4e+02 Score=22.70 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=37.1
Q ss_pred CCEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCcc-c--hhhHHHHHHHHHHHHhhcCCCEEEEeccc
Q 026584 67 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-D--VTKFISGCMASLSAMVQLELPHVNILSKM 143 (236)
Q Consensus 67 ~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~-d--p~~~is~~l~sls~m~~l~lP~InVlsK~ 143 (236)
-+|+|+||+| +.+.-.. .. +.+.+ ++ |+.++... | -..-...++.-+.-..+.++|+-.++|++
T Consensus 84 ~d~VlvDleG----~as~~~~-~a---ia~sD--lV---lIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~ 150 (231)
T PF07015_consen 84 FDFVLVDLEG----GASELND-YA---IARSD--LV---LIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRV 150 (231)
T ss_pred CCEEEEeCCC----CCchhHH-HH---HHHCC--EE---EECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecC
Confidence 3799999999 3322211 11 22233 33 34443322 1 12222334444556667899999999999
Q ss_pred ccc
Q 026584 144 DLV 146 (236)
Q Consensus 144 DLl 146 (236)
.-.
T Consensus 151 ~~~ 153 (231)
T PF07015_consen 151 PAA 153 (231)
T ss_pred Ccc
Confidence 854
No 446
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=21.03 E-value=1.4e+02 Score=23.87 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=16.2
Q ss_pred CCCEEEEeCCCceee---eeccchHHHHHHHHhhC
Q 026584 66 DDDYLVFDCPGQIEL---FTHVPVLRNFVDHLKSR 97 (236)
Q Consensus 66 ~~~Yil~D~PGQiEl---f~~~~~~~~iv~~L~~~ 97 (236)
+.+.+++|.|..+-- ...+..+.++++.+++.
T Consensus 95 ~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~ 129 (187)
T cd01124 95 KAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF 129 (187)
T ss_pred CCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC
Confidence 556777777775432 12223344455555433
No 447
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=20.97 E-value=3.4e+02 Score=24.33 Aligned_cols=63 Identities=19% Similarity=0.366 Sum_probs=38.4
Q ss_pred HhhcCCCEEEEecccccc-cchhHhhhhccccHHHHHHHhhhcchhHHHHHHHHHHHHhhccCCeeEEEeeccCccc
Q 026584 129 MVQLELPHVNILSKMDLV-TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS 204 (236)
Q Consensus 129 m~~l~lP~InVlsK~DLl-~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~l~~li~d~~lv~f~pls~~d~~~ 204 (236)
.-.+++|+|-.-+..+.+ .+......++. ..+......+++++++..|+.-++..+...+..+
T Consensus 86 ~~~~~iP~Is~~~~~~~~~s~~~~~~~~~R-------------~~p~~~~~~~ai~~ll~~~~w~~vaii~~~~~~g 149 (362)
T cd06367 86 SAQTRIPVVGISGRESIFMSDKNIHSLFLQ-------------TGPSLEQQADVMLEILEEYDWHQFSVVTSRDPGY 149 (362)
T ss_pred hhhhcCcEEEeeccccccccCCCcccceEe-------------ecCcHHHHHHHHHHHHHHcCCeEEEEEEEcCccc
Confidence 345899999877776665 43312222222 1123345567788888888887777776665543
No 448
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=20.96 E-value=94 Score=26.99 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=37.2
Q ss_pred EEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhh-cCCCEEEEecccccccc
Q 026584 70 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-LELPHVNILSKMDLVTN 148 (236)
Q Consensus 70 il~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~-l~lP~InVlsK~DLl~~ 148 (236)
-+-||-||-|+ +.+. +.- -.|... +|.++ ..+|..+|=+..=+---+.-. -++|.|.|=||+||+.+
T Consensus 72 mlWdtagqeEf----DaIt---kAy-yrgaqa-~vLVF---STTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 72 MLWDTAGQEEF----DAIT---KAY-YRGAQA-SVLVF---STTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED 139 (246)
T ss_pred HHHHhccchhH----HHHH---HHH-hccccc-eEEEE---ecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh
Confidence 56799999883 2222 121 123332 23222 345655555432222222222 48999999999999975
Q ss_pred h
Q 026584 149 K 149 (236)
Q Consensus 149 ~ 149 (236)
.
T Consensus 140 s 140 (246)
T KOG4252|consen 140 S 140 (246)
T ss_pred h
Confidence 4
No 449
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=20.72 E-value=1.5e+02 Score=28.04 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=33.8
Q ss_pred CEEEEeCCCceeeeeccchHHHHHHHHhhCCCceEEEEeecCCCccchhhHHHHHHHHHHHHhhcCCCEEEEeccccc
Q 026584 68 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 145 (236)
Q Consensus 68 ~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~~~~V~LiD~~~~~dp~~~is~~l~sls~m~~l~lP~InVlsK~DL 145 (236)
+.++.|.|| +=|-.-.....++..+=..|.+ .+.+.+.++ +..+--+ +-..-+++.|+.-|-||+|.
T Consensus 87 nv~lWDlPG---~gt~~f~~~~Yl~~~~~~~yD~-fiii~s~rf-~~ndv~L------a~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 87 NVTLWDLPG---IGTPNFPPEEYLKEVKFYRYDF-FIIISSERF-TENDVQL------AKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp TEEEEEE-----GGGSS--HHHHHHHTTGGG-SE-EEEEESSS---HHHHHH------HHHHHHTT-EEEEEE--HHH
T ss_pred CCeEEeCCC---CCCCCCCHHHHHHHccccccCE-EEEEeCCCC-chhhHHH------HHHHHHcCCcEEEEEecccc
Confidence 579999999 4455555555555543234554 333444443 3333222 23455689999999999996
No 450
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=20.50 E-value=2.4e+02 Score=24.12 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHh---hHHHHHHHhcc-----------c---CCCCEEEEeCCCceeeeeccchHHHHHHHHhhCCCc
Q 026584 38 PNGGLIYCMEHLEDN---LDDWLAEELDN-----------Y---LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN 100 (236)
Q Consensus 38 PNGalv~~me~l~~n---~~~wl~~~i~~-----------~---~~~~Yil~D~PGQiElf~~~~~~~~iv~~L~~~~~~ 100 (236)
|+.|..+-|+.|... + .|-... +. . .+...+++||||.-+.-.....-..-+-.+... .+
T Consensus 16 ~~sGKS~llN~l~~~~~~f-~~~~~~-~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~l-ls 92 (224)
T cd01851 16 QSSGKSFLLNHLFGTLSGF-DVMDTS-QQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATL-LS 92 (224)
T ss_pred CCCCHHHHHHHHhCCCCCe-EecCCC-CCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHH-Hh
Confidence 567788888888754 2 222110 10 0 124689999999443222110111122222211 12
Q ss_pred eEEEEeecCCCcc
Q 026584 101 VCAVYLLDSQFIT 113 (236)
Q Consensus 101 ~~~V~LiD~~~~~ 113 (236)
-+.+|.++.....
T Consensus 93 s~~i~n~~~~~~~ 105 (224)
T cd01851 93 SVLIYNSWETILG 105 (224)
T ss_pred CEEEEeccCcccH
Confidence 3577888875544
No 451
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=20.26 E-value=1e+02 Score=26.87 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=9.9
Q ss_pred CCCEEEEeCCCc
Q 026584 66 DDDYLVFDCPGQ 77 (236)
Q Consensus 66 ~~~Yil~D~PGQ 77 (236)
.-+|||||||--
T Consensus 212 ~yD~ViiD~pp~ 223 (274)
T TIGR03029 212 DYDVVIVDTPSA 223 (274)
T ss_pred cCCEEEEeCCCc
Confidence 458999999973
Done!