BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026585
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2IPZ0|RIMP_ANADE Ribosome maturation factor RimP OS=Anaeromyxobacter dehalogenans
(strain 2CP-C) GN=rimP PE=3 SV=1
Length = 171
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 97 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 156
+K+G ++D +A T LD +A I LEVSSPG++R +R P + +R+ +
Sbjct: 47 DKAGGVGIDDCQAVSKTVEPILD---VADFIEPAYDLEVSSPGLDRPLRKPRDFDRYAGQ 103
Query: 157 AMYVKYVGETVTT--GSPS 173
++VK G T GSP+
Sbjct: 104 RVHVKAYGPVAGTAPGSPA 122
>sp|B4UHF7|RIMP_ANASK Ribosome maturation factor RimP OS=Anaeromyxobacter sp. (strain K)
GN=rimP PE=3 SV=1
Length = 171
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 97 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 156
+K+G ++D +A T LD A++ I LEVSSPG++R +R P + +R+ +
Sbjct: 47 DKAGGVGIDDCQAVSKTVEPILDVADV---IEPAYDLEVSSPGLDRPLRKPRDFDRYAGQ 103
Query: 157 AMYVKYVGETVTT--GSPS 173
++VK G T G+P+
Sbjct: 104 RVHVKAYGPVAGTAPGAPA 122
>sp|B8JFY3|RIMP_ANAD2 Ribosome maturation factor RimP OS=Anaeromyxobacter dehalogenans
(strain 2CP-1 / ATCC BAA-258) GN=rimP PE=3 SV=1
Length = 171
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 97 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 156
+K+G ++D +A T LD A++ I LEVSSPG++R +R P + +R+ +
Sbjct: 47 DKAGGVGIDDCQAVSKTVEPILDVADV---IEPAYDLEVSSPGLDRPLRKPGDFDRYAGQ 103
Query: 157 AMYVKYVGETVTT--GSPS 173
++VK G T G+P+
Sbjct: 104 RVHVKAYGPVAGTAPGAPA 122
>sp|B0SQH2|RIMP_LEPBP Ribosome maturation factor RimP OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / ATCC 23582 / Paris) GN=rimP PE=3 SV=1
Length = 162
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 85 NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVV 144
++ I++ ++ +++K+GS S+ED C T RL E + +L+VSS G ERV+
Sbjct: 33 HALIEIELDHLTDKTGSASLED----CETVSRRLKEELDQWGEEFDFTLQVSSAGAERVL 88
Query: 145 RIPLELERFK 154
R+P +L RF+
Sbjct: 89 RLPEDLIRFQ 98
>sp|B0SH16|RIMP_LEPBA Ribosome maturation factor RimP OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / Ames) GN=rimP PE=3 SV=1
Length = 162
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 85 NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVV 144
++ I++ ++ +++K+GS S+ED C T RL E + +L+VSS G ERV+
Sbjct: 33 HALIEIELDHLTDKTGSASLED----CETVSRRLKEELDQWGEEFDFTLQVSSAGAERVL 88
Query: 145 RIPLELERFK 154
R+P +L RF+
Sbjct: 89 RLPEDLIRFQ 98
>sp|Q1DAM9|RIMP_MYXXD Ribosome maturation factor RimP OS=Myxococcus xanthus (strain DK
1622) GN=rimP PE=3 SV=1
Length = 161
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 CTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVG 164
CT +D + ++ IP +LEVSSPGV+R +R P ER K + + VK G
Sbjct: 59 CTQVSRAVDPSLDVEDFIPHEYNLEVSSPGVDRPLRKPTHFERVKGQQVKVKTFG 113
>sp|A7H9F0|RIMP_ANADF Ribosome maturation factor RimP OS=Anaeromyxobacter sp. (strain
Fw109-5) GN=rimP PE=3 SV=1
Length = 171
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 97 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 156
+K G +ED +A LD + I LEVSSPG++R +R P + +R+ +
Sbjct: 47 DKPGGVGIEDCQAVSRLVDPILD---VEDFIEPAYDLEVSSPGLDRPLRKPADFDRYAGQ 103
Query: 157 AMYVKYVGETVTT--GSPSESDGVFRLISF 184
+VK G T GSP+ + L+ +
Sbjct: 104 RAHVKAYGPVAGTAPGSPARKNWTGVLVGY 133
>sp|B8CW69|RIMP_HALOH Ribosome maturation factor RimP OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=rimP PE=3 SV=1
Length = 159
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 85 NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVV 144
N ++V IE N G +++ E +LDE + I E+ LEVSSPG+ER +
Sbjct: 34 NRVLRVFIE---NPEGEVTLDHCENVSKNLDEKLDEVD---PIQESYILEVSSPGIERPL 87
Query: 145 RIPLELERFKDRAMYVK 161
+ + +RF + Y+K
Sbjct: 88 KKKEDFDRFSGKLAYIK 104
>sp|Q8F7K3|RIMP_LEPIN Ribosome maturation factor RimP OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=rimP
PE=3 SV=1
Length = 162
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 17/130 (13%)
Query: 64 AEDVCLSFDGDL----KIYAFRT--LPN-STIKVRIEKMSNKSGSPSMEDIEAFCTTYRA 116
+E++ DG L K+Y+ + PN S I+V ++ + + GS S+ + C
Sbjct: 5 SEEISGILDGVLSLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLE----CEQVSR 60
Query: 117 RLDEAEIAKSIPE-NTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSES 175
+L E E+ + P+ + +L+VSS G ER + +P +L+RF+ + + + E S E
Sbjct: 61 KLKE-ELERISPDLDYTLKVSSAGAERKLNLPGDLDRFRGIPIRLVFRSEE----SEKEQ 115
Query: 176 DGVFRLISFD 185
+G+FR+++ D
Sbjct: 116 EGIFRVVNRD 125
>sp|Q72NX1|RIMP_LEPIC Ribosome maturation factor RimP OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=rimP PE=3 SV=1
Length = 162
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 17/130 (13%)
Query: 64 AEDVCLSFDGDL----KIYAFRT--LPN-STIKVRIEKMSNKSGSPSMEDIEAFCTTYRA 116
+E++ DG L K+Y+ + PN S I+V ++ + + GS S+ + C
Sbjct: 5 SEEISGILDGVLSLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLE----CEQVSR 60
Query: 117 RLDEAEIAKSIPE-NTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSES 175
+L E E+ + P+ + +L+VSS G ER + +P +L+RF+ + + + E S E
Sbjct: 61 KLKE-ELERISPDLDYTLKVSSAGAERKLNLPGDLDRFRGIPIRLVFRSEE----SEKEQ 115
Query: 176 DGVFRLISFD 185
+G+FR+++ D
Sbjct: 116 EGIFRVVNRD 125
>sp|C5D9C5|RIMP_GEOSW Ribosome maturation factor RimP OS=Geobacillus sp. (strain WCH70)
GN=rimP PE=3 SV=1
Length = 157
Score = 37.4 bits (85), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 117 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESD 176
+LDE + IP N LEVSSPG ER ++ P + + + +Y+K T P E +
Sbjct: 63 KLDEVD---PIPHNYFLEVSSPGAERPLKKPKDFTKAIGKNVYIK-------TYEPIEGE 112
Query: 177 GVF--RLISFDMETECCT 192
F LI FD T T
Sbjct: 113 KEFEGELIGFDGTTVSVT 130
>sp|Q5LWL1|RIMP_RUEPO Ribosome maturation factor RimP OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=rimP PE=3 SV=1
Length = 208
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 30/127 (23%)
Query: 90 VRIEKMSNKS-----------GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSP 138
VRI MS KS G ++D A A LD + I + +LEVSSP
Sbjct: 31 VRIRLMSGKSTTLQIMADKPDGGIEVDDCAAISNAVSATLD---VEDPILDAYTLEVSSP 87
Query: 139 GVERVVRIPLELERFKDRAMYVKYVGETVTT----------GSPSESDGVFRLISFDMET 188
G++R L R KD M+ Y + TT G + +G LI+ D
Sbjct: 88 GIDR------PLTRLKDFEMFEGYEAKIETTEMIDGRRRFRGELAGIEGNEVLINLDQNG 141
Query: 189 ECCTWGL 195
E T GL
Sbjct: 142 ETVTIGL 148
>sp|A6TRL1|RIMP_ALKMQ Ribosome maturation factor RimP OS=Alkaliphilus metalliredigens
(strain QYMF) GN=rimP PE=3 SV=1
Length = 152
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 84 PNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERV 143
P+ ++V I +K G +++D + +LDEA+ I EN LEVSSPG++R
Sbjct: 33 PHKYLRVYI----DKPGGITLDDCQKVSEGLSKKLDEAD---PIVENYFLEVSSPGLDRP 85
Query: 144 VRIPLELERFKDRAMYVK 161
++ ++ +FK + +K
Sbjct: 86 LKREVDFLKFKGEMIELK 103
>sp|A4J5X6|RIMP_DESRM Ribosome maturation factor RimP OS=Desulfotomaculum reducens
(strain MI-1) GN=rimP PE=3 SV=1
Length = 153
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 97 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 156
+K G ++D + LDE + +P+ LEVSSPG+ER ++ P + E+F
Sbjct: 44 DKPGGIELDDCQGVSEKIDTLLDEID---PVPQAYFLEVSSPGIERPLKKPQDFEKFNGH 100
Query: 157 AMYVKYVGETVTTGSP 172
+ +TT +P
Sbjct: 101 LV-------NITTFAP 109
>sp|A9G896|RIMP_SORC5 Ribosome maturation factor RimP OS=Sorangium cellulosum (strain So
ce56) GN=rimP PE=3 SV=1
Length = 208
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 87 TIKVRIEK--MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVV 144
T+++ IE+ + G ++ED + LD ++ IP + +LEVSSPG++R +
Sbjct: 42 TLRLTIERENADDAGGGVTLEDCADVSRDVSSVLDVEDL---IPNHYNLEVSSPGLDRRL 98
Query: 145 RIPLELERFKDRAMYVKY 162
R E RF R VK
Sbjct: 99 RTAAEFARFLGRTAKVKL 116
>sp|B9K861|RIMP_THENN Ribosome maturation factor RimP OS=Thermotoga neapolitana (strain
ATCC 49049 / DSM 4359 / NS-E) GN=rimP PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 95 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 154
+ N G S+ D E F LD ++ I + +LEVSSPG++R +R P + +RF
Sbjct: 43 IDNPVGYVSVRDCELFSRELERFLDREDL---IEHSYTLEVSSPGLDRPLRGPKDYQRFT 99
Query: 155 DR-AMYVKYVGETVTTGSPSESDGV 178
+ A + G+T S DG+
Sbjct: 100 GKLAKIITKDGKTFIGRIESFVDGI 124
>sp|B1I359|RIMP_DESAP Ribosome maturation factor RimP OS=Desulforudis audaxviator (strain
MP104C) GN=rimP PE=3 SV=1
Length = 154
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 97 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 156
+K G +++D EA LD+ + IP + LEVSSPG+ER ++ + RFK R
Sbjct: 44 DKPGGINLDDCEAVSRELDRALDDVDF---IPHSYVLEVSSPGLERPLKRAEDYVRFKGR 100
Query: 157 AMYV 160
+ +
Sbjct: 101 LVQI 104
>sp|Q04ZJ3|RIMP_LEPBL Ribosome maturation factor RimP OS=Leptospira borgpetersenii
serovar Hardjo-bovis (strain L550) GN=rimP PE=3 SV=1
Length = 162
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 13/115 (11%)
Query: 75 LKIYAFRT--LPN-STIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPE-N 130
+K+Y+ + PN S I+V ++ + + GS S+ + C +L E E+ + P+ +
Sbjct: 20 VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLE----CEQVSRKLKE-ELERISPDLD 74
Query: 131 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFD 185
+L+VSS G ER + +P +++RF R + V+ V + S +G+FR+++ D
Sbjct: 75 FTLKVSSAGAERKLHLPEDIDRF--RGIPVRLVFR--SGESEKNQEGIFRIVNRD 125
>sp|Q04U33|RIMP_LEPBJ Ribosome maturation factor RimP OS=Leptospira borgpetersenii
serovar Hardjo-bovis (strain JB197) GN=rimP PE=3 SV=1
Length = 162
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 13/115 (11%)
Query: 75 LKIYAFRT--LPN-STIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPE-N 130
+K+Y+ + PN S I+V ++ + + GS S+ + C +L E E+ + P+ +
Sbjct: 20 VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLE----CEQVSRKLKE-ELERISPDLD 74
Query: 131 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFD 185
+L+VSS G ER + +P +++RF R + V+ V + S +G+FR+++ D
Sbjct: 75 FTLKVSSAGAERKLHLPEDIDRF--RGIPVRLVFR--SGESEKNQEGIFRIVNRD 125
>sp|Q3AB94|RIMP_CARHZ Ribosome maturation factor RimP OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=rimP PE=3
SV=1
Length = 154
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 104 MEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVK 161
++D + F LDE + IP++ LEVSSPG+ER ++ + E+F R +K
Sbjct: 52 LDDCQNFSERIGVILDEED---PIPQSYYLEVSSPGIERPLKKLADFEKFAGREAQIK 106
>sp|B5YEH1|RIMP_DICT6 Ribosome maturation factor RimP OS=Dictyoglomus thermophilum
(strain ATCC 35947 / DSM 3960 / H-6-12) GN=rimP PE=3
SV=1
Length = 156
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 58 KEALAIAEDVCLSFDGDLKIYAFRTLPNS-TIKVRIEKMSNKSGSPSMEDIEAFCTTYRA 116
K+ I E +C + +L +R P+ ++V I+K+ G ++ED
Sbjct: 11 KKLKEIVEPICEKYSYELVDLEYRREPHGWVLRVYIDKV----GGVTVEDCAYLSEKISK 66
Query: 117 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESD 176
LD I IP + LEVSSPG++R PL+ +R +R M GE V E +
Sbjct: 67 ELD---IKDPIPHSYILEVSSPGLDR----PLKRKRDFERHM-----GEKVNITLLEEIE 114
Query: 177 G 177
G
Sbjct: 115 G 115
>sp|B8E2Y4|RIMP_DICTD Ribosome maturation factor RimP OS=Dictyoglomus turgidum (strain
Z-1310 / DSM 6724) GN=rimP PE=3 SV=1
Length = 156
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 19/117 (16%)
Query: 63 IAEDVCLSFDGDLKIYAFRTLPNS-TIKVRIEKMSNKSGSPSMEDIEAFCTTYRARL-DE 120
I E +C + +L +R P+ ++V I+K+ G ++ED C ++ E
Sbjct: 16 IVEPICEKYSYELVDLEYRREPHGWVLRVYIDKV----GGVTVED----CAYISEKISKE 67
Query: 121 AEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDG 177
+I IP + LEVSSPG++R PL+ +R +R ++GE V E +G
Sbjct: 68 LDIKDPIPHSYILEVSSPGLDR----PLKRKRDFER-----HIGEKVNITLLEEIEG 115
>sp|A5GF83|RIMP_GEOUR Ribosome maturation factor RimP OS=Geobacter uraniireducens (strain
Rf4) GN=rimP PE=3 SV=1
Length = 159
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 97 NKSGSPSMEDIEAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELERFKD 155
+K G +++D C + L E ++ I E+ SLEVSSPG++R ++ + +RFK
Sbjct: 44 DKEGGVNLDD----CASVSRELSEVLDVEDVISEHYSLEVSSPGIDRPLKKVEDFQRFKG 99
Query: 156 RAMYVK 161
R + ++
Sbjct: 100 RLVKIR 105
>sp|B7GG79|RIMP_ANOFW Ribosome maturation factor RimP OS=Anoxybacillus flavithermus
(strain DSM 21510 / WK1) GN=rimP PE=3 SV=2
Length = 156
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 117 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVK 161
+LDE + IP N LEVSSPG ER ++ + ER + +YVK
Sbjct: 62 KLDEID---PIPHNYFLEVSSPGAERPLKKARDFERAVGKNVYVK 103
>sp|B8HG52|RIMP_ARTCA Ribosome maturation factor RimP OS=Arthrobacter chlorophenolicus
(strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)
GN=rimP PE=3 SV=2
Length = 205
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Query: 65 EDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIA 124
EDV ++ G ++ + V ++ ++G S++ I LD A
Sbjct: 47 EDVVINVAGSHRV----------VHVVVDLPQEETGGVSLDVIADISKVLSDALDNDPGA 96
Query: 125 KSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYV-GETVTTGSPSESDGVFRLI 182
+ P + LEVSSPGV R + P R K R VK + GE VT S DG L+
Sbjct: 97 DTRPYD--LEVSSPGVGRPLTEPRHWHRAKGRIATVKVIQGENVTGRIQSVDDGGVTLV 153
>sp|Q01W33|RIMP_SOLUE Ribosome maturation factor RimP OS=Solibacter usitatus (strain
Ellin6076) GN=rimP PE=3 SV=2
Length = 153
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 108 EAFCTTYRARLDEA-EIAKSIPENTSLEVSSPGVERVVRIPLELERF 153
A C T ++ E E +IP + +LEVSSPGVER + P + +RF
Sbjct: 50 HADCQTVSDKVGEILEAEDAIPGHYTLEVSSPGVERKLLKPQDYQRF 96
>sp|Q82WD1|RIMP_NITEU Ribosome maturation factor RimP OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=rimP PE=3 SV=1
Length = 143
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 17/83 (20%)
Query: 84 PNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERV 143
P ++V I+K K GS +++D C L + ++I N LEVSSPG++R
Sbjct: 26 PGRLLRVFIDK---KEGSITLDD----CVAISNHLSQLLAVENIDYN-RLEVSSPGLDR- 76
Query: 144 VRIPLELERFKDRAMYVKYVGET 166
PL K +A +V+Y+GE+
Sbjct: 77 ---PL-----KKKADFVRYMGES 91
>sp|B2G6V2|RIMP_LACRJ Ribosome maturation factor RimP OS=Lactobacillus reuteri (strain
JCM 1112) GN=rimP PE=3 SV=1
Length = 157
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 97 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 156
NK G ++ED LD E IP+ LEVSSPG ER ++ + +R D
Sbjct: 42 NKDGGITLEDCALVSDELSEALDNVE-PDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDH 100
Query: 157 ----AMYVKYVGETVTTGSPSE-SDGVFRLISFDMETECCTWGLADVRINREKAGKGR 209
++Y + G+ V G+ ++ SD L D + I+R+K + R
Sbjct: 101 YIHISLYQQINGQKVYEGTLTQLSDKEITLDYLDKTRH------RQITIDRQKIAQAR 152
>sp|A5VJD6|RIMP_LACRD Ribosome maturation factor RimP OS=Lactobacillus reuteri (strain
DSM 20016) GN=rimP PE=3 SV=1
Length = 157
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 97 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 156
NK G ++ED LD E IP+ LEVSSPG ER ++ + +R D
Sbjct: 42 NKDGGITLEDCALVSDELSEALDNVE-PDPIPQAYFLEVSSPGAERPLKKEEDYQRAIDH 100
Query: 157 ----AMYVKYVGETVTTGSPSE-SDGVFRLISFDMETECCTWGLADVRINREKAGKGR 209
++Y + G+ V G+ ++ SD L D + I+R+K + R
Sbjct: 101 YIHISLYQQINGQKVYEGTLTQLSDKEITLDYLDKTRH------RQITIDRQKIAQAR 152
>sp|A8FDC7|RIMP_BACP2 Ribosome maturation factor RimP OS=Bacillus pumilus (strain
SAFR-032) GN=rimP PE=3 SV=1
Length = 157
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 20/101 (19%)
Query: 117 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETV--TTGSPSE 174
+LDEA+ I +N LEVSSPG ER PL K +A + K +G+ V T P +
Sbjct: 63 KLDEAD---PISQNYFLEVSSPGAER----PL-----KKKADFEKALGKNVFMKTYEPID 110
Query: 175 SDGVF--RLISFDMETECCTWGL----ADVRINREKAGKGR 209
+ F L SFD E T + ++ I EK R
Sbjct: 111 GEKAFEGELTSFDGEIATVTVKIKTRKKEINIPYEKIANAR 151
>sp|B1LAP5|RIMP_THESQ Ribosome maturation factor RimP OS=Thermotoga sp. (strain RQ2)
GN=rimP PE=3 SV=1
Length = 150
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 95 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 154
+ N G S+ D E F LD ++ I + +LEVSSPG++R +R P + RF
Sbjct: 43 IDNPMGYVSVRDCELFSREMERFLDREDL---IEHSYTLEVSSPGLDRPLRGPRDYVRFT 99
Query: 155 DRAMYV------KYVG--ETVTTGSPSESDG 177
+ + ++G E+ G+ + SDG
Sbjct: 100 GKLAKIVTKDGKTFIGRIESFVDGTITISDG 130
>sp|A6LMV9|RIMP_THEM4 Ribosome maturation factor RimP OS=Thermosipho melanesiensis
(strain BI429 / DSM 12029) GN=rimP PE=3 SV=1
Length = 147
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 13/101 (12%)
Query: 95 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 154
+ N S +D E LD+ I IP L VSSPG+ R +R + ERF
Sbjct: 41 IDNPYDYISTKDCENVSRKLEFELDKINI---IPNKYYLTVSSPGLNRPLRNVKDFERFT 97
Query: 155 DRA--------MYVKYVGETVTTGSPSESDGVFRLISFDME 187
+ Y+ Y+ V E+DG F I F E
Sbjct: 98 GKKAKIKTRENTYIGYIKNVVDNIITFETDGKF--IEFKFE 136
>sp|Q67P90|RIMP_SYMTH Ribosome maturation factor RimP OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=rimP PE=3 SV=1
Length = 160
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 25/134 (18%)
Query: 97 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 156
+K G +D EA A+LDE I + P + EVSSPG++R PL+ E
Sbjct: 46 DKEGGVGFDDCEALSRVVDAQLDE--ILPNPPYDF-FEVSSPGLDR----PLKRE----- 93
Query: 157 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRIN---REKAGKGRPLS- 212
A + +YVG V + + DG SF E + GL D R+ E G+G+ ++
Sbjct: 94 ADFARYVGHKVVVTTYAPVDG---QKSFVGELQ----GLVDGRVTLTLTEGKGRGQTIAL 146
Query: 213 --KKQREWRLNTTF 224
K+ RL F
Sbjct: 147 DRKQVASARLYVEF 160
>sp|Q2RJM9|RIMP_MOOTA Ribosome maturation factor RimP OS=Moorella thermoacetica (strain
ATCC 39073) GN=rimP PE=3 SV=1
Length = 158
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 103 SMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVK 161
++D E A LDE + IP + LEVSSPG+ER ++ + RF R + ++
Sbjct: 48 GLDDCEQVSRVVSALLDEKD---PIPHSYYLEVSSPGLERPLKKEADFNRFAGRKVKLR 103
>sp|A0Q0R0|RIMP_CLONN Ribosome maturation factor RimP OS=Clostridium novyi (strain NT)
GN=rimP PE=3 SV=1
Length = 154
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 99 SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAM 158
S ++ED E LDE + I ++ LEVSSPG+ERV+ L ++ + +
Sbjct: 47 SKGINLEDCEKVSRKVSDILDEKD---PISDSYYLEVSSPGIERVLYTEEHLHKYTNNQI 103
Query: 159 YVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGK 207
VK + GS E G LISF+ +T + I RE+ K
Sbjct: 104 IVKLA--KLFEGS-REHQG--NLISFNDDTVTIEKENESINIPRERIKK 147
>sp|A8LQ53|RIMP_DINSH Ribosome maturation factor RimP OS=Dinoroseobacter shibae (strain
DFL 12) GN=rimP PE=3 SV=1
Length = 196
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 90 VRIEKMSNKS-----------GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSP 138
VR+ MS KS G ++D T A LD + I +N +LEVSSP
Sbjct: 30 VRLRVMSGKSPTLQIMAEKPEGGIEVDDCARISTEVSATLD---VEDPIEDNYTLEVSSP 86
Query: 139 GVERVVRIPLELERFKDRAMYVKYVGETVTT 169
G++R L R KD +V Y + TT
Sbjct: 87 GIDR------PLTRLKDFDTWVGYEAKIETT 111
>sp|A9BH33|RIMP_PETMO Ribosome maturation factor RimP OS=Petrotoga mobilis (strain DSM
10674 / SJ95) GN=rimP PE=3 SV=1
Length = 157
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 85 NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVV 144
N ++V I+K G S+ D E F + LDE ++ ++ L VSSPG++R +
Sbjct: 37 NKILEVVIDKAD---GYVSIGDCERFSKAFDPWLDEIDL---FDKSYELVVSSPGLDRKL 90
Query: 145 RIPLELERFKDRAMYVKYVGETVTTGSP 172
R + ERFK + K++ + T P
Sbjct: 91 RGKADYERFKGK--LAKFILKGKETKHP 116
>sp|B7IDT7|RIMP_THEAB Ribosome maturation factor RimP OS=Thermosipho africanus (strain
TCF52B) GN=rimP PE=3 SV=1
Length = 148
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 103 SMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKY 162
S +D E +LD+ +I IP+ L VSSPG++R +R + +RF + + +K
Sbjct: 49 STKDCENISREVEFQLDKLDI---IPQRYYLTVSSPGLDRPLRSIDDFKRFINNKVKIKL 105
Query: 163 VGETVTTGSPSESDGVFRL 181
ET+ D V L
Sbjct: 106 ENETIIGYIKDVKDSVIFL 124
>sp|B3QUN0|RIMP_CHLT3 Ribosome maturation factor RimP OS=Chloroherpeton thalassium
(strain ATCC 35110 / GB-78) GN=rimP PE=3 SV=1
Length = 182
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 85 NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAE-IAKSIPENTSLEVSSPGVERV 143
N TI + IE ++ S+E+ + A LD +E + +P + L VSSPG+ R
Sbjct: 42 NKTIDI-IEVFADTDSGISVENCKFLSKHISAELDASEEMQALLPRHFKLVVSSPGLSRP 100
Query: 144 VRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINRE 203
+ + + ++ R M V Y G DG R IS + E E A + ++
Sbjct: 101 LTMNRQYKKNIGRLMQVTYQN---ADGEIKTIDG--RFISLEEEAE------ASITLDIT 149
Query: 204 KAGKGRPLSKKQREWRLNTTFDSLR 228
K K +P +K + + F ++
Sbjct: 150 KIQKSKPNAKPKPPELVTIPFSQIQ 174
>sp|C1F695|RIMP_ACIC5 Ribosome maturation factor RimP OS=Acidobacterium capsulatum
(strain ATCC 51196 / DSM 11244 / JCM 7670) GN=rimP PE=3
SV=1
Length = 201
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 87 TIKVRIEKMSNKSGSP------SMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGV 140
TI+V E+M + +P + ED AF T + LD E+ E T LEVSSPG+
Sbjct: 61 TIEVH-EEMPREGMNPEHFSGVTHEDCSAFSTDFGTLLDVEELMPGASEYT-LEVSSPGL 118
Query: 141 ERVVRIPLELERF 153
+R ++ + ERF
Sbjct: 119 DRKLQSRADYERF 131
>sp|B7K5I1|RIMP_CYAP8 Ribosome maturation factor RimP OS=Cyanothece sp. (strain PCC 8801)
GN=rimP PE=3 SV=1
Length = 153
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 95 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 154
+ N G S++D EA A LDE+++ + LE+SSPG+ R + E FK
Sbjct: 42 IRNSQGETSLDDCEAVSRALEAVLDESQVMGG---SYVLEISSPGISRQLHSDREFISFK 98
Query: 155 DRAMYV 160
A+ V
Sbjct: 99 GFAVIV 104
>sp|Q7NFN6|RIMP_GLOVI Ribosome maturation factor RimP OS=Gloeobacter violaceus (strain
PCC 7421) GN=rimP PE=3 SV=2
Length = 156
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 59 EALAIAEDVCLSFDGDLKIYAFRTLPN-STIKVRIEKMSNKSGSPSMEDIEAFCTTYRAR 117
+ A+AE V L A++T +T++V I + +G ++D E A
Sbjct: 9 QVTALAEPVAEQLGLQLVAVAYQTHTKPATLRVDIRHPTEGTG---LDDCEKMSRALEAL 65
Query: 118 LDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVG 164
LD + I +LEVSSPGVERV+ E F+ + VK G
Sbjct: 66 LDTRD--DLIIGAYNLEVSSPGVERVLTTDREFMAFRGFPVMVKTFG 110
>sp|Q39VA9|RIMP_GEOMG Ribosome maturation factor RimP OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=rimP PE=3 SV=1
Length = 159
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 97 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 156
+K+G +++D + LD + I EN +LEVSSPG+ R ++ + ER++ R
Sbjct: 44 DKAGGITLDDCALVSREFSEILD---VEDFISENYTLEVSSPGLNRPLKRESDYERYRGR 100
Query: 157 AMYVK 161
+ V+
Sbjct: 101 LVKVR 105
>sp|P32726|RIMP_BACSU Ribosome maturation factor RimP OS=Bacillus subtilis (strain 168)
GN=rimP PE=3 SV=1
Length = 156
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 117 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYV----GETVTTGSP 172
+LDEA+ I +N LEVSSPG ER ++ + E+ + +Y+K G V G
Sbjct: 63 KLDEAD---PISQNYFLEVSSPGAERPLKKKADFEKSLGKNVYIKTYEPIDGVKVFEGEL 119
Query: 173 SESDG 177
+E DG
Sbjct: 120 AEFDG 124
>sp|B0JU70|RIMP_MICAN Ribosome maturation factor RimP OS=Microcystis aeruginosa (strain
NIES-843) GN=rimP PE=3 SV=1
Length = 156
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 60 ALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLD 119
A+ IAE++ L D+ + P + +R N +G +ED E LD
Sbjct: 13 AIPIAENLGLEV-VDIVFQTNKRPPVLRVDIR-----NLAGDTGLEDCEQMSRALETALD 66
Query: 120 EAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYV 160
EI +P LE+SSPG+ R + E + FK + V
Sbjct: 67 SQEI---LPGAYVLEISSPGISRQLSSEREFQSFKGFPVIV 104
>sp|C0ZF55|RIMP_BREBN Ribosome maturation factor RimP OS=Brevibacillus brevis (strain 47
/ JCM 6285 / NBRC 100599) GN=rimP PE=3 SV=1
Length = 152
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 95 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 154
+ N++G+ ++D +LDE + IP LEVSSPG ER +R K
Sbjct: 41 IDNETGNIDIDDCRLVSEKLSEKLDEVD---PIPTAYFLEVSSPGAERPLR--------K 89
Query: 155 DRAMYVKYVGETV--TTGSPSESDGVF--RLISFD 185
D+ + K VG V TT P E F L+S++
Sbjct: 90 DKD-FTKAVGRNVHITTKEPIEGATTFEGELVSYE 123
>sp|A5ILL0|RIMP_THEP1 Ribosome maturation factor RimP OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=rimP PE=3 SV=1
Length = 150
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 95 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 154
+ N G S+ D E F LD ++ I + +LEVSSPG++R +R P + RF
Sbjct: 43 IDNPVGYVSVRDCELFSREIERFLDREDL---IEHSYTLEVSSPGLDRPLRGPKDYVRFT 99
Query: 155 DR-AMYVKYVGETVTTGSPSESDG 177
+ A V G+T S DG
Sbjct: 100 GKLAKIVTKDGKTFIGRIESFVDG 123
>sp|Q74CT6|RIMP_GEOSL Ribosome maturation factor RimP OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=rimP PE=3 SV=1
Length = 159
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 97 NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 156
+K G S++D A LD + I EN +LEVSSPG+ R ++ + ER+ R
Sbjct: 44 DKPGGISLDDCAAVSRELSEILD---VEDFIRENYTLEVSSPGLNRPLKKEADYERYAGR 100
Query: 157 AMYVK 161
+ V+
Sbjct: 101 LVKVR 105
>sp|A7Z4T0|RIMP_BACA2 Ribosome maturation factor RimP OS=Bacillus amyloliquefaciens
(strain FZB42) GN=rimP PE=3 SV=1
Length = 156
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 117 RLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYV----GETVTTGSP 172
+LDEA+ I +N LEVSSPG ER ++ + E+ + +Y+K G V G
Sbjct: 63 KLDEAD---PITQNYFLEVSSPGAERPLKKKADFEKSLGKNVYMKTYEPIDGLKVFEGKL 119
Query: 173 SESDGVFRLISFDMET 188
+E DG I ++T
Sbjct: 120 AEFDGQTVTIEMTVKT 135
>sp|Q9X299|RIMP_THEMA Ribosome maturation factor RimP OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=rimP PE=3 SV=1
Length = 150
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 95 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 154
+ N G S+ D E F LD + I + +LEVSSPG++R +R P + RF
Sbjct: 43 IDNPVGYVSVRDCELFSREMERFLDREDF---IEHSYTLEVSSPGLDRPLRGPRDYVRFT 99
Query: 155 DR-AMYVKYVGETVTTGSPSESDG 177
+ A V G+T S DG
Sbjct: 100 GKLAKIVTKDGKTFIGRIESFVDG 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,010,627
Number of Sequences: 539616
Number of extensions: 4222471
Number of successful extensions: 21385
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 18978
Number of HSP's gapped (non-prelim): 2077
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)