Query 026585
Match_columns 236
No_of_seqs 149 out of 1249
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ib8_A Conserved protein SP14. 100.0 7.8E-38 2.7E-42 262.5 17.7 147 56-235 10-161 (164)
2 3dex_A SAV_2001; alpha-beta pr 67.1 10 0.00034 29.3 5.4 60 55-119 24-89 (107)
3 1y96_A Gemin6, SIP2, GEM-assoc 57.7 17 0.00059 26.9 5.0 64 145-233 7-71 (86)
4 3byp_A CZRB protein; membrane 55.4 51 0.0017 23.1 8.7 54 85-147 41-94 (94)
5 3pgw_B SM B; protein-RNA compl 54.8 32 0.0011 29.8 6.9 45 144-201 3-48 (231)
6 2fao_A Probable ATP-dependent 54.0 39 0.0013 30.4 7.7 88 53-166 144-233 (309)
7 2p0g_A Selenoprotein W-related 53.1 25 0.00086 26.8 5.4 39 55-93 15-53 (105)
8 1xhj_A Nitrogen fixation prote 51.6 18 0.00063 26.7 4.3 32 60-94 15-46 (88)
9 2iru_A Putative DNA ligase-lik 49.7 43 0.0015 30.1 7.1 86 53-164 146-233 (303)
10 2ojl_A Hypothetical protein; B 48.9 12 0.00041 28.9 2.9 61 55-119 20-86 (108)
11 2oka_A Hypothetical protein; P 44.0 25 0.00084 26.8 4.0 61 55-119 17-83 (104)
12 2fg1_A Conserved hypothetical 43.4 26 0.00087 27.8 4.3 35 37-79 123-157 (158)
13 2i9o_A MHB8A peptide; beta-hai 41.5 21 0.00072 21.9 2.6 13 38-50 10-22 (37)
14 4emk_C U6 snRNA-associated SM- 41.2 23 0.00078 27.1 3.5 40 138-187 15-56 (113)
15 2z51_A NIFU-like protein 2, ch 39.7 37 0.0013 27.4 4.7 51 58-119 91-142 (154)
16 1d3b_B Protein (small nuclear 38.1 18 0.00063 26.0 2.4 32 146-187 5-37 (91)
17 1i4k_A Putative snRNP SM-like 36.4 38 0.0013 23.5 3.8 30 148-187 7-37 (77)
18 4gop_A Putative uncharacterize 36.3 17 0.00059 27.8 2.1 45 141-192 4-48 (114)
19 2fa8_A Hypothetical protein AT 33.6 32 0.0011 26.2 3.2 39 55-93 19-57 (105)
20 3s6n_F Small nuclear ribonucle 33.6 49 0.0017 23.8 4.1 31 147-187 8-39 (86)
21 3s6n_G Small nuclear ribonucle 33.5 33 0.0011 23.9 3.1 32 146-187 5-37 (76)
22 4emk_B U6 snRNA-associated SM- 33.3 40 0.0014 23.4 3.5 30 148-187 7-37 (75)
23 1h64_1 SnRNP SM-like protein; 33.2 39 0.0013 23.3 3.4 30 148-187 7-37 (75)
24 3mgj_A Uncharacterized protein 33.0 65 0.0022 25.1 4.9 46 49-94 6-55 (118)
25 1th5_A NIFU1; iron-sulfur clus 32.4 14 0.00046 26.5 0.8 49 60-119 12-61 (74)
26 1ljo_A Archaeal SM-like protei 32.2 62 0.0021 22.4 4.4 31 147-187 7-39 (77)
27 2z51_A NIFU-like protein 2, ch 31.3 74 0.0025 25.6 5.2 113 59-194 11-124 (154)
28 1d3b_A Protein (small nuclear 31.1 54 0.0019 22.8 3.9 34 149-193 9-43 (75)
29 2jyc_A Uncharacterized protein 30.8 54 0.0018 26.2 4.3 35 37-79 125-159 (160)
30 1th7_A SnRNP-2, small nuclear 29.7 47 0.0016 23.3 3.4 30 148-187 12-42 (81)
31 2iut_A DNA translocase FTSK; n 29.2 2.9E+02 0.01 26.7 9.9 92 53-149 87-180 (574)
32 3bw1_A SMX4 protein, U6 snRNA- 29.0 56 0.0019 23.9 3.8 30 148-187 13-43 (96)
33 2ius_A DNA translocase FTSK; n 28.4 2.3E+02 0.0077 26.9 8.9 76 55-135 42-121 (512)
34 2eee_A Uncharacterized protein 27.9 54 0.0019 25.6 3.8 35 37-79 114-148 (149)
35 1mgq_A SM-like protein; LSM, R 27.2 1E+02 0.0034 21.8 4.8 33 145-187 15-48 (83)
36 1veh_A NIFU-like protein hirip 26.1 45 0.0015 24.7 2.8 28 64-94 26-53 (92)
37 3kdf_A Replication protein A 1 25.5 62 0.0021 24.9 3.6 46 141-192 8-54 (121)
38 2rm4_A CG6311-PB, DM EDC3; enh 25.3 2E+02 0.0067 21.8 6.2 60 152-233 9-70 (103)
39 2pi2_E Replication protein A 1 24.9 41 0.0014 26.8 2.6 46 142-192 30-75 (142)
40 2v7q_J ATPase inhibitor; ION t 24.4 22 0.00075 25.2 0.7 22 40-61 6-27 (66)
41 4emh_A Probable U6 snRNA-assoc 23.4 69 0.0023 24.1 3.4 28 150-187 21-49 (105)
42 1i8f_A Putative snRNP SM-like 21.6 70 0.0024 22.4 3.0 31 147-187 13-44 (81)
43 1gmj_A ATPase inhibitor; coile 21.6 21 0.00071 26.4 0.1 22 41-62 7-28 (84)
44 4emk_A U6 snRNA-associated SM- 21.5 88 0.003 23.0 3.6 35 143-187 17-53 (94)
45 1n9r_A SMF, small nuclear ribo 20.5 67 0.0023 23.5 2.8 30 148-187 24-55 (93)
No 1
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=100.00 E-value=7.8e-38 Score=262.53 Aligned_cols=147 Identities=17% Similarity=0.252 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhh--hhhccCCCCCCeE
Q 026585 56 WDKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLD--EAEIAKSIPENTS 132 (236)
Q Consensus 56 w~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD--~~d~~~~i~~~Y~ 132 (236)
..+++.++++|++++ |++|+.+++...+ +++|||+||+ ++|||||||+.+||+|+++|| +.+ ||+++|+
T Consensus 10 ~~~~v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~----~~gi~lddC~~vSr~is~~LD~~~~d---~i~~~Y~ 81 (164)
T 1ib8_A 10 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDK----PEGITLNDTADLTEMISPVLDTIKPD---PFPEQYF 81 (164)
T ss_dssp HHHHHHHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEEC----SSCCCHHHHHHHHHHHGGGTTTCCSC---CCCSCEE
T ss_pred HHHHHHHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEEC----CCCCCHHHHHHHHHHHHHHhcccccc---CCCCCeE
Confidence 357899999999999 9999999987654 7899999999 789999999999999999999 888 9999999
Q ss_pred EEEecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCC
Q 026585 133 LEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRP 210 (236)
Q Consensus 133 LEVSSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~ 210 (236)
|||||||++|||++++||.||+|+.|+|+++ .+++|++.| +|.+++++++++.|.. |++
T Consensus 82 LEVSSPGldRpL~~~~df~r~~G~~V~V~l~-------~~~~g~k~~~G~L~~~~~~~v~l~~~~-----------k~~- 142 (164)
T 1ib8_A 82 LEITSPGLERPLKTKDAVAGAVGKYIHVGLY-------QAIDKQKVFEGTLLAFEEDELTMEYMD-----------KTR- 142 (164)
T ss_dssp EEEECCSSSSCCSSHHHHHHHCSEEEEEECS-------SCSSSCSEEEEEEEEEETTEEEEEEEC-----------SSC-
T ss_pred EEEeCCCCCCCCCCHHHHHHhCCcEEEEEEe-------cccCCceEEEEEEEEEeCCEEEEEEec-----------ccC-
Confidence 9999999999999999999999999999999 788899999 9999999988776531 111
Q ss_pred ccccccceeeeeccccccceEEEec
Q 026585 211 LSKKQREWRLNTTFDSLRLVRLHSD 235 (236)
Q Consensus 211 ~~kk~~~~~l~ipf~~I~karL~~e 235 (236)
...++|||++|++|||+++
T Consensus 143 ------~~~~~i~~~~I~ka~l~~e 161 (164)
T 1ib8_A 143 ------KKTVQIPYSLVSKARLAVK 161 (164)
T ss_dssp ------EEEEEECSSCCSSCEEECS
T ss_pred ------CeEEEEEHHHCcEEEEEEE
Confidence 1146899999999999986
No 2
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=67.13 E-value=10 Score=29.26 Aligned_cols=60 Identities=20% Similarity=0.347 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEe------ccCCCCCCCChhHHHHHHHHHHHhhh
Q 026585 55 WWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIE------KMSNKSGSPSMEDIEAFCTTYRARLD 119 (236)
Q Consensus 55 ~w~~~v~~lae~vl~~~g~el~lv~~~~~~~~~lrV~ID------k~~~~~ggvsldDCe~vSr~i~~~LD 119 (236)
.|.-|+..+|+++++.|+..|..+++..+..+..+|+|+ ++ ..|-|...+ +-+.|+++++
T Consensus 24 ~w~lRa~~laqeLl~tF~~~l~eVsL~Pg~gG~FeV~vdg~lVwsRk--~gGFPd~ke---Lkq~VRd~i~ 89 (107)
T 3dex_A 24 RWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRR--EQGFPEPTA---VKRLVRDRVA 89 (107)
T ss_dssp TCHHHHHHHHHHHHHHSTTTEEEEEEEEESSSCEEEEETTEEEEEHH--HHCSCCHHH---HHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHhcccccceEEEEeCCCceEEEEECCEEEEEec--CCCCCCHHH---HHHHHHHHhC
Confidence 699999999999999999999888887777777777654 32 123355444 4455666665
No 3
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=57.67 E-value=17 Score=26.86 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=43.0
Q ss_pred CChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCCceEEEEeecceehhhcccCCCCCccccccceeeeec
Q 026585 145 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTT 223 (236)
Q Consensus 145 ~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk~~~~~l~ip 223 (236)
+.|-+|..++|+.|+|++. +|+..- .|.++|..+..+.+. ++. .+++. .++-|+
T Consensus 7 ~~p~el~~li~KeV~V~l~----------dg~~y~G~l~tvDp~s~sIvL~--n~~------~~~~~-------~~~iI~ 61 (86)
T 1y96_A 7 KGPLEWQDYIYKEVRVTAS----------EKNEYKGWVLTTDPVSANIVLV--NFL------EDGSM-------SVTGIM 61 (86)
T ss_dssp SCHHHHHHTTTCEEEEEET----------TTEEEEEEEEEECTTTCCEEEE--EEC------TTSCE-------EEEEEC
T ss_pred CCHHHHHhhcCCEEEEEEc----------CCCEEEEEEEEECCCceEEEEe--ecc------cCCeE-------EEEEEe
Confidence 4688999999999999998 333222 899999877766553 221 12221 245677
Q ss_pred cccccceEEE
Q 026585 224 FDSLRLVRLH 233 (236)
Q Consensus 224 f~~I~karL~ 233 (236)
=..|+.+.+.
T Consensus 62 G~aI~eI~v~ 71 (86)
T 1y96_A 62 GHAVQTVETM 71 (86)
T ss_dssp GGGEEEEEEE
T ss_pred cceEEEEEEe
Confidence 7777777665
No 4
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=55.40 E-value=51 Score=23.12 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=31.3
Q ss_pred CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEEecCCCCCCCCCh
Q 026585 85 NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIP 147 (236)
Q Consensus 85 ~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGleRpL~~~ 147 (236)
+..+.+-|.- ++..|+.+...+...+...|-..- ++. ..++++- |...++|++|
T Consensus 41 ~~~v~~hi~v----~~~~~~~~~h~i~~~ie~~l~~~~---~~~-~vtIh~e-p~~~~~~~~~ 94 (94)
T 3byp_A 41 RSFLEFHLVV----RGDTPVEEAHRLCDELERALAQAF---PGL-QATIHVE-PEGERKRTNP 94 (94)
T ss_dssp EEEEEEEEEE----CTTCBHHHHHHHHHHHHHHHHHHS---TTE-EEEEEEE-ECC-------
T ss_pred cEEEEEEEEE----CCCCcHHHHHHHHHHHHHHHHHHC---CCC-EEEEEeC-CCCccccCCC
Confidence 4444554544 457899999999999998885443 332 5677776 4667777765
No 5
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=54.82 E-value=32 Score=29.83 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=31.7
Q ss_pred CCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCCceEEEEeecceehh
Q 026585 144 VRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDMETECCTWGLADVRIN 201 (236)
Q Consensus 144 L~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e~~~~~~~la~vk~n 201 (236)
+.....+.+|+++.|+|+++ +++... +|.++|.. +.+.|.++.+.
T Consensus 3 v~k~~kL~klIdKrV~V~Lk----------dGRel~GtLkgFDq~---MNLVL~Da~E~ 48 (231)
T 3pgw_B 3 VGKSSKMLQHIDYRMRCILQ----------DGRIFIGTFKAFDKH---MNLILCDCDEF 48 (231)
T ss_pred cCchHHHHHhcCCeEEEEEC----------CCcEEEEEEEEEccc---ccEEecCEEEE
Confidence 34567899999999999998 444444 99999864 23334555544
No 6
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=54.00 E-value=39 Score=30.43 Aligned_cols=88 Identities=11% Similarity=0.168 Sum_probs=62.5
Q ss_pred CCcHHHHH--HHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCC
Q 026585 53 GTWWDKEA--LAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 130 (236)
Q Consensus 53 ~~~w~~~v--~~lae~vl~~~g~el~lv~~~~~~~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~ 130 (236)
|+.|.+-+ ..+++++|+++|+.-+ .|++++.=|+|+|-- ....+-+++..++++|...|.... |+-
T Consensus 144 ~~~f~~v~~aA~~~r~~L~~lGL~~f---~KTSGgkGlHV~vPl----~~~~~~~~vr~fa~~~A~~l~~~~-----Pd~ 211 (309)
T 2fao_A 144 ALPWKRMLEATQLSLTLLDELGLRAF---LKTSGGKGMHLLVPL----ERRHGWDEVKDFAQAISQHLARLM-----PER 211 (309)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCCE---EEECSSSSEEEEEEC----CSCSCHHHHHHHHHHHHHHHHHHC-----TTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcee---eEccCCCeeEEEEEc----CCCCCHHHHHHHHHHHHHHHHHhC-----cce
Confidence 45686653 5557889999985221 477776656666544 346899999999999999997654 677
Q ss_pred eEEEEecCCCCCCCCChHHHhhcCCCeEEEEEeecc
Q 026585 131 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGET 166 (236)
Q Consensus 131 Y~LEVSSPGleRpL~~~~df~rf~G~~V~V~~~~~~ 166 (236)
|+.+. .+..++-+|.|=|.+..
T Consensus 212 ~t~~~--------------~k~~R~gkIfiDy~qN~ 233 (309)
T 2fao_A 212 FSAVS--------------GPRNRVGKIFVDYLRNS 233 (309)
T ss_dssp EECSC--------------SGGGSTTSEEEECGGGS
T ss_pred eehhh--------------hHhhCCCCEEEeCccCC
Confidence 77665 45667777888887443
No 7
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=53.06 E-value=25 Score=26.80 Aligned_cols=39 Identities=8% Similarity=0.221 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEe
Q 026585 55 WWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIE 93 (236)
Q Consensus 55 ~w~~~v~~lae~vl~~~g~el~lv~~~~~~~~~lrV~ID 93 (236)
.|.-|+..+++++++.|...|.-+++.....+...|+|+
T Consensus 15 ~w~~Ra~~laqeLl~tF~~~l~~v~l~P~~~G~FEV~vn 53 (105)
T 2p0g_A 15 NWMLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCN 53 (105)
T ss_dssp TCHHHHHHHHHHHHHHTTTTEEEEEEEEESTTCEEEEET
T ss_pred CChHHHHHHHHHHHHHcCcccceEEEEeCCCceEEEEEC
Confidence 599999999999999999888878877766788888765
No 8
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=51.61 E-value=18 Score=26.67 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEec
Q 026585 60 ALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEK 94 (236)
Q Consensus 60 v~~lae~vl~~~g~el~lv~~~~~~~~~lrV~IDk 94 (236)
+++-++|.|++.|++++++.|. .++++|.+-.
T Consensus 15 ~L~~IRP~L~~dGGdvelv~v~---~g~V~V~L~G 46 (88)
T 1xhj_A 15 VIERLRPFLLRDGGDCTLVDVE---DGIVKLQLHG 46 (88)
T ss_dssp HHHHHHHHHHHHSCEEEEEECC---SSEEEEEEES
T ss_pred HHHHhcHHHHhcCCeEEEEEEE---CCEEEEEEee
Confidence 3344888999999999999995 5788888865
No 9
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=49.73 E-value=43 Score=30.14 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=58.5
Q ss_pred CCcHHHHH--HHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCC
Q 026585 53 GTWWDKEA--LAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN 130 (236)
Q Consensus 53 ~~~w~~~v--~~lae~vl~~~g~el~lv~~~~~~~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~ 130 (236)
|+.|.+-+ ..+++++|+++|+.-+ .|++++.=|.|+|-- ....+-+++..++++|...|.... |+-
T Consensus 146 ~~~f~~v~~aA~~~r~~L~~lGL~~f---~KTSGgkGlHV~vPl----~~~~~~~~vr~fa~~~A~~l~~~~-----Pd~ 213 (303)
T 2iru_A 146 GVMMAQLAEVARAVRDLLADIGLVTF---PVTSGSKGLHLYTPL----DEPVSSRGATVLAKRVAQRLEQAM-----PAL 213 (303)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTCCCE---EEECSSSCEEEEEEE----EEEECHHHHHHHHHHHHHHHHHHC-----TTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCccc---eEccCCCeEEEEEEc----CCCCCHHHHHHHHHHHHHHHHHHC-----cce
Confidence 45686654 5557889999984322 477775444554432 235899999999999999998654 566
Q ss_pred eEEEEecCCCCCCCCChHHHhhcCCCeEEEEEee
Q 026585 131 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVG 164 (236)
Q Consensus 131 Y~LEVSSPGleRpL~~~~df~rf~G~~V~V~~~~ 164 (236)
|+.+. .+..++-+|.|=|.+
T Consensus 214 ~t~~~--------------~k~~R~gkIfvDy~q 233 (303)
T 2iru_A 214 VTSTM--------------TKSLRAGKVFVDWSQ 233 (303)
T ss_dssp EESSC--------------CGGGCTTSEEEECGG
T ss_pred ehhhh--------------hHHhCCCCEEEECcc
Confidence 66443 345667778888874
No 10
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=48.87 E-value=12 Score=28.87 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEe------ccCCCCCCCChhHHHHHHHHHHHhhh
Q 026585 55 WWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIE------KMSNKSGSPSMEDIEAFCTTYRARLD 119 (236)
Q Consensus 55 ~w~~~v~~lae~vl~~~g~el~lv~~~~~~~~~lrV~ID------k~~~~~ggvsldDCe~vSr~i~~~LD 119 (236)
.|.-|+..+++++++.|+.++.-+++..+.++...|+++ |+.+ .|-|...++ -+.|+++++
T Consensus 20 ~w~lRa~~laqeLl~tF~~~l~eV~L~P~~~G~FeV~vng~lVwsRk~~-ggFPe~keL---kq~Vrd~i~ 86 (108)
T 2ojl_A 20 QWLLRAAWMAQELLSTFGADLGEVALVPGTGGVFRIHYNGAPLWDREVD-GGFPEAKVL---KQRVRDHLD 86 (108)
T ss_dssp TCHHHHHHHHHHHHHHHGGGSSEEEEEEECTTCEEEEETTEEEEEHHHH-CSCCCHHHH---HHHHHHHC-
T ss_pred CChHHHHHHHHHHHHhcCcccceEEEEeCCCceEEEEECCEEEEEEccC-CCCCCHHHH---HHHHHHHhC
Confidence 599999999999999998777777777766788888765 2210 223555544 445555554
No 11
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=43.97 E-value=25 Score=26.79 Aligned_cols=61 Identities=18% Similarity=0.345 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEe------ccCCCCCCCChhHHHHHHHHHHHhhh
Q 026585 55 WWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIE------KMSNKSGSPSMEDIEAFCTTYRARLD 119 (236)
Q Consensus 55 ~w~~~v~~lae~vl~~~g~el~lv~~~~~~~~~lrV~ID------k~~~~~ggvsldDCe~vSr~i~~~LD 119 (236)
.|.-|+..+++++++.|...|.-+++..+..+...|+|+ |+.+ .|-|...+ +-+.|.++++
T Consensus 17 ~~~~Ra~~laqeLl~tF~~~l~~v~l~P~~~G~FEV~vng~lV~SKk~~-ggFPe~~e---Lkq~Vrd~i~ 83 (104)
T 2oka_A 17 QWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKAD-GGFPEAKA---LKQRVRDRID 83 (104)
T ss_dssp TCHHHHHHHHHHHHHHSTTTCSEEEEEEECTTCEEEEETTEEEEEHHHH-TSCCCHHH---HHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHcCcccceEEEEeCCCceEEEEECCEEEEEEecC-CCCCCHHH---HHHHHHHHhC
Confidence 599999999999999998877777777666777788765 2210 22355544 4455555554
No 12
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=43.42 E-value=26 Score=27.75 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=25.9
Q ss_pred cccccCCCCCCceeccCCcHHHHHHHHHHHHHhhcCCcEEEEE
Q 026585 37 EAYVGDGGAGGGISLAGTWWDKEALAIAEDVCLSFDGDLKIYA 79 (236)
Q Consensus 37 ~~~~~~~~~gg~i~l~~~~w~~~v~~lae~vl~~~g~el~lv~ 79 (236)
=|-+|-|-. |.+| +++.+++++++..++..+.++.
T Consensus 123 ~P~Ig~G~~-------G~~w-~~v~~ii~~~l~~~~i~v~vy~ 157 (158)
T 2fg1_A 123 MPRIGCGLA-------GGKW-ELMEQIIKEELITKEIAVTVYD 157 (158)
T ss_dssp ECCTTCSTT-------CCCH-HHHHHHHHHHTGGGTCCEEEEE
T ss_pred ecCcCCCCC-------CCCH-HHHHHHHHHHhccCCcEEEEec
Confidence 456666543 4589 4788999999999887777765
No 13
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=41.50 E-value=21 Score=21.92 Aligned_cols=13 Identities=54% Similarity=1.178 Sum_probs=8.5
Q ss_pred ccccCCCCCCcee
Q 026585 38 AYVGDGGAGGGIS 50 (236)
Q Consensus 38 ~~~~~~~~gg~i~ 50 (236)
.|-|-||.|||-+
T Consensus 10 tyeggggggggsa 22 (37)
T 2i9o_A 10 TYEGGGGGGGGSA 22 (37)
T ss_dssp CCCCSCCCCSCSS
T ss_pred EeecCCCCCcchH
Confidence 4567777777655
No 14
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=41.22 E-value=23 Score=27.11 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=19.2
Q ss_pred CCCCCCCCC-hHHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 138 PGVERVVRI-PLELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 138 PGleRpL~~-~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
+=-++|-+. ..++.+++|+.|.|+++ +|+... +|.++|.-
T Consensus 15 ~~~~~~kke~i~~L~~~l~k~V~V~L~----------dGr~~~G~L~~fD~~ 56 (113)
T 4emk_C 15 QPTERPRKESILDLSRYQDQRIQATFT----------GGRQITGILKGFDQL 56 (113)
T ss_dssp -----------------CCSEEEEEET----------TSCEEEEEEEEECTT
T ss_pred CCccCCccchHHHHHHHcCCcEEEEEe----------CCeEEEEEEEEEcCc
Confidence 334666554 48899999999999998 444444 99999875
No 15
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=39.66 E-value=37 Score=27.44 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhh-cCCcEEEEEEEEcCCceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhh
Q 026585 58 KEALAIAEDVCLS-FDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLD 119 (236)
Q Consensus 58 ~~v~~lae~vl~~-~g~el~lv~~~~~~~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD 119 (236)
+++++-++|.|++ .|.+++++++. .+.++|.+... -.+ |..+...|..+|-
T Consensus 91 ~~~L~~iRP~L~~~dGGdvelv~v~---~~~v~v~l~Ga---c~~-----~~Tlk~~Ie~~l~ 142 (154)
T 2z51_A 91 EKVLEEIRPYLIGTADGSLDLVEIE---DPIVKIRITGP---AAG-----VMTVRVAVTQKLR 142 (154)
T ss_dssp HHHHHHHGGGCCGGGCCEEEEEEEE---TTEEEEEEESG---GGG-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCeEEEEEE---CCEEEEEEecC---Ccc-----cHhHHHHHHHHHH
Confidence 3455568889997 89999999995 57888888652 111 5566666666664
No 16
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=38.09 E-value=18 Score=26.04 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=23.9
Q ss_pred ChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 146 IPLELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 146 ~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
....+.+++|++|.|+++ +|+... +|.++|..
T Consensus 5 ~~~~L~~~~~k~V~V~l~----------~gr~~~G~L~~~D~~ 37 (91)
T 1d3b_B 5 KSSKMLQHIDYRMRCILQ----------DGRIFIGTFKAFDKH 37 (91)
T ss_dssp --CCCGGGTTSEEEEEET----------TCCEEEEEEEECCTT
T ss_pred hhHHHHHHcCCcEEEEEC----------CCeEEEEEEEEECCC
Confidence 345678999999999998 454444 99999875
No 17
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=36.39 E-value=38 Score=23.48 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=23.7
Q ss_pred HHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 148 LELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 148 ~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
.-+.+++|++|.|+++ +|+... +|.++|.-
T Consensus 7 ~~L~~~~~~~V~V~L~----------~g~~~~G~L~~~D~~ 37 (77)
T 1i4k_A 7 DVLNRSLKSPVIVRLK----------GGREFRGTLDGYDIH 37 (77)
T ss_dssp HHHHTTTTSEEEEEET----------TSCEEEEEEEEECTT
T ss_pred HHHHHhCCCEEEEEEc----------CCCEEEEEEEEEcCC
Confidence 4578899999999998 444444 99999865
No 18
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=36.27 E-value=17 Score=27.81 Aligned_cols=45 Identities=4% Similarity=-0.045 Sum_probs=30.9
Q ss_pred CCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceEEEEEEeCCceEEE
Q 026585 141 ERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCT 192 (236)
Q Consensus 141 eRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f~L~~vd~e~~~~~ 192 (236)
.+|.-++.++.+|.|++|++.-+-. ...+ +.+.|.+-|+..++|.
T Consensus 4 ~tpRVn~~~L~~~~g~~VrivGkV~------~~~g-~~~~l~s~d~~~Vtv~ 48 (114)
T 4gop_A 4 PTPLINSSMLGQYVGQTVRIVGKVH------KVTG-NTLLMQTSDLGNVEIA 48 (114)
T ss_dssp CCCEECTTTGGGGTTSEEEEEEEEE------EEET-TEEEEECTTSCEEEEE
T ss_pred CCceECHHHHHhhCCCeEEEEEEEe------eeCC-CEEEEEeCCCCEEEEE
Confidence 4788899999999999999865521 2233 5556766665555543
No 19
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=33.63 E-value=32 Score=26.17 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEe
Q 026585 55 WWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIE 93 (236)
Q Consensus 55 ~w~~~v~~lae~vl~~~g~el~lv~~~~~~~~~lrV~ID 93 (236)
.|.-|+..+++++++.|...|.-+++.....+...|+|+
T Consensus 19 ~~~~Ra~~laqeLl~tF~~~l~~V~l~P~~~G~FEV~vn 57 (105)
T 2fa8_A 19 NWLLRAGWMAQEILQTFASDIGEVSLIPSTGGLFEITVD 57 (105)
T ss_dssp TCHHHHHHHHHHHHHHHGGGCSEEEEEEECTTCEEEEET
T ss_pred CCHHHHHHHHHHHHHHcCcccceEEEEcCCCcEEEEEEC
Confidence 599999999999999997766556666655777777765
No 20
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=33.61 E-value=49 Score=23.75 Aligned_cols=31 Identities=19% Similarity=0.030 Sum_probs=24.1
Q ss_pred hHHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 147 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 147 ~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
..-+..++|++|.|+++ +|+... +|.++|.-
T Consensus 8 ~~~L~~~~~k~V~V~Lk----------~g~~~~G~L~~~D~~ 39 (86)
T 3s6n_F 8 KPFLNGLTGKPVMVKLK----------WGMEYKGYLVSVDGY 39 (86)
T ss_dssp HHHHHHHTTSEEEEEET----------TSCEEEEEEEEECTT
T ss_pred HHHHHHhCCCeEEEEEc----------CCeEEEEEEEEEcCc
Confidence 35568899999999998 454444 99999874
No 21
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=33.45 E-value=33 Score=23.95 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=17.9
Q ss_pred ChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 146 IPLELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 146 ~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
....+..++|++|.|+++ +|+... +|.++|.-
T Consensus 5 ~~~~L~~~~~k~V~V~Lk----------~gr~~~G~L~~~D~~ 37 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLN----------GGRHVQGILRGFDPF 37 (76)
T ss_dssp ---------CCEEEEEET----------TTEEEEEEEEEECTT
T ss_pred chHHHHHhCCCeEEEEEC----------CCcEEEEEEEEECCc
Confidence 346788999999999998 443333 99999865
No 22
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=33.31 E-value=40 Score=23.44 Aligned_cols=30 Identities=10% Similarity=0.019 Sum_probs=23.4
Q ss_pred HHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 148 LELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 148 ~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
.-+..++|++|.|+++ +|+... +|.++|.-
T Consensus 7 ~~L~~~~~k~V~V~Lk----------~g~~~~G~L~~~D~~ 37 (75)
T 4emk_B 7 EFLNKVIGKKVLIRLS----------SGVDYKGILSCLDGY 37 (75)
T ss_dssp HHHHHTTTSEEEEECT----------TSCEEEEEEEEECTT
T ss_pred HHHHHhCCCeEEEEEc----------CCcEEEEEEEEEcCc
Confidence 4568899999999998 444433 99999874
No 23
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=33.17 E-value=39 Score=23.32 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=23.5
Q ss_pred HHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 148 LELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 148 ~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
.-+..++|++|.|+++ +|+... +|.++|.-
T Consensus 7 ~~L~~~~~~~V~V~l~----------~g~~~~G~L~~~D~~ 37 (75)
T 1h64_1 7 DVIHRSLDKDVLVILK----------KGFEFRGRLIGYDIH 37 (75)
T ss_dssp HHHHTTTTSEEEEEET----------TSEEEEEEEEEECTT
T ss_pred HHHHHHCCCEEEEEEC----------CCCEEEEEEEEEeCC
Confidence 4578899999999998 344333 99999865
No 24
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=32.96 E-value=65 Score=25.11 Aligned_cols=46 Identities=28% Similarity=0.296 Sum_probs=33.3
Q ss_pred eeccCCcHHHHHHHHHHHHHhhcCCcEEEEEEEEcCC----ceEEEEEec
Q 026585 49 ISLAGTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPN----STIKVRIEK 94 (236)
Q Consensus 49 i~l~~~~w~~~v~~lae~vl~~~g~el~lv~~~~~~~----~~lrV~IDk 94 (236)
|.|.|-..+.-++.-|=..+..+|+++.+..|..+++ ++.++.|-.
T Consensus 6 IeL~GHLiDSgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a 55 (118)
T 3mgj_A 6 IELRGHIIDSLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIG 55 (118)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEE
T ss_pred EEEEEEeechhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEec
Confidence 5555665665566666667788999999999988762 577777765
No 25
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=32.40 E-value=14 Score=26.49 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcC-CcEEEEEEEEcCCceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhh
Q 026585 60 ALAIAEDVCLSFD-GDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLD 119 (236)
Q Consensus 60 v~~lae~vl~~~g-~el~lv~~~~~~~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD 119 (236)
+++-++|.|++.| .+++++.+. .+.++|.+-.. -.+ |..+...|...|-
T Consensus 12 ~L~~iRP~L~~dGGGdvelv~v~---~g~V~v~l~Ga--C~g------c~Tlk~gIe~~L~ 61 (74)
T 1th5_A 12 VLNEIRPYLAGTGGGGLQFLMIK---GPIVKVRLTGP--AAV------VRTVRIAVSKKLR 61 (74)
T ss_dssp HHTTTHHHHTTTTCCCCCCCEEE---TTEEEECCCSS--SSS------SSSHHHHHHHHHH
T ss_pred HHHHHhHHHHhcCCCcEEEEEEe---CCEEEEEEecC--Ccc------hHHHHHHHHHHHH
Confidence 4444889999999 999999996 46777766542 012 4455555555553
No 26
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=32.16 E-value=62 Score=22.41 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=24.7
Q ss_pred hHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCC
Q 026585 147 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDME 187 (236)
Q Consensus 147 ~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e 187 (236)
..-+.+++|++|.|+++ +|++.+ +|.++|.-
T Consensus 7 ~~~L~~~~~~~v~V~lk----------~g~~~~~G~L~~~D~~ 39 (77)
T 1ljo_A 7 NQMVKSMVGKIIRVEMK----------GEENQLVGKLEGVDDY 39 (77)
T ss_dssp HHHHHHTTTSEEEEEET----------TCSSEEEEEEEEECTT
T ss_pred HHHHHHHCCCEEEEEEe----------CCCEEEEEEEEEECCc
Confidence 45788999999999998 452445 99999865
No 27
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=31.29 E-value=74 Score=25.59 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEEecC
Q 026585 59 EALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSP 138 (236)
Q Consensus 59 ~v~~lae~vl~~~g~el~lv~~~~~~~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSP 138 (236)
++++-++|.|++.|.+++++.+. .+.++|.+-..= .++++- ...+...|...|-. -+|+--..+.-++
T Consensus 11 ~~L~~iRP~l~~dGGdvelv~v~---~~~V~v~l~GaC--~gC~ss--~~Tlk~~Ie~~L~~-----~vpev~~V~~v~~ 78 (154)
T 2z51_A 11 SVLDEIRPYLMSDGGNVALHEID---GNVVRVKLQGAC--GSCPSS--TMTMKMGIERRLME-----KIPEIVAVEALPD 78 (154)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEE---TTEEEEEEEHHH--HTCHHH--HHHHHHHHHHHHHH-----HCTTCCEEEECCS
T ss_pred HHHHHhChHHHhcCCeEEEEEEE---CCEEEEEEECCC--CCCCcc--HhHHHHHHHHHHHH-----hCCCceEEEEccC
Confidence 34556899999999999999996 468888775410 122211 12233344444432 2344434444433
Q ss_pred CCC-CCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceEEEEEEeCCceEEEEe
Q 026585 139 GVE-RVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWG 194 (236)
Q Consensus 139 Gle-RpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f~L~~vd~e~~~~~~~ 194 (236)
... -+| +.+.+.+++.. ++=.+.. ..-+...|.++++...++.+.
T Consensus 79 ~~e~l~L-~~~~v~~~L~~-iRP~L~~---------~dGGdvelv~v~~~~v~v~l~ 124 (154)
T 2z51_A 79 EETGLEL-NEENIEKVLEE-IRPYLIG---------TADGSLDLVEIEDPIVKIRIT 124 (154)
T ss_dssp SCCSCCS-SHHHHHHHHHH-HGGGCCG---------GGCCEEEEEEEETTEEEEEEE
T ss_pred chhhhHH-HHHHHHHHHHH-HHHHhhh---------cCCCCeEEEEEECCEEEEEEe
Confidence 333 244 44566666552 2211221 012345788887655555443
No 28
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=31.11 E-value=54 Score=22.83 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=24.0
Q ss_pred HHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCCceEEEE
Q 026585 149 ELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDMETECCTW 193 (236)
Q Consensus 149 df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e~~~~~~ 193 (236)
=++.+.|++|.|+++ .|+..- +|.++|.- -.+.+
T Consensus 9 ~L~~~~g~~V~VeLk----------~g~~~~G~L~~~D~~-MNl~L 43 (75)
T 1d3b_A 9 VLHEAEGHIVTCETN----------TGEVYRGKLIEAEDN-MNCQM 43 (75)
T ss_dssp HHHHTTTSEEEEEET----------TSCEEEEEEEEECTT-CCEEE
T ss_pred HHHHhCCCEEEEEEC----------CCcEEEEEEEEEccc-eeEEE
Confidence 356899999999998 343333 99999864 34433
No 29
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=30.84 E-value=54 Score=26.18 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=24.9
Q ss_pred cccccCCCCCCceeccCCcHHHHHHHHHHHHHhhcCCcEEEEE
Q 026585 37 EAYVGDGGAGGGISLAGTWWDKEALAIAEDVCLSFDGDLKIYA 79 (236)
Q Consensus 37 ~~~~~~~~~gg~i~l~~~~w~~~v~~lae~vl~~~g~el~lv~ 79 (236)
=|-+|-|-. |-+| +++.+++..++..++.++.+|.
T Consensus 125 ~P~IgtGi~-------G~p~-~~v~~ii~~~~~~~~i~v~Vy~ 159 (160)
T 2jyc_A 125 MPRIGCGLD-------RLQW-ENVSAMIEEVFEATDIKITVYT 159 (160)
T ss_dssp EESCCSSCS-------SSCH-HHHHHHHHHHHTTSCCEEEEEE
T ss_pred eCCCCCCCC-------CCCH-HHHHHHHHHHHhhCCCeEEEEe
Confidence 456666533 5589 5788899999988876666664
No 30
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=29.67 E-value=47 Score=23.33 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=23.7
Q ss_pred HHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 148 LELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 148 ~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
.-+.+++|++|.|+++ +|+... +|.++|.-
T Consensus 12 ~~L~~~~~~~V~V~l~----------~g~~~~G~L~~~D~~ 42 (81)
T 1th7_A 12 KVLAESLNNLVLVKLK----------GNKEVRGMLRSYDQH 42 (81)
T ss_dssp HHHHHHTTSEEEEEET----------TTEEEEEEEEEECTT
T ss_pred HHHHHhCCCeEEEEEc----------CCcEEEEEEEEEcCC
Confidence 5678999999999998 444333 99999875
No 31
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=29.21 E-value=2.9e+02 Score=26.67 Aligned_cols=92 Identities=13% Similarity=0.145 Sum_probs=62.8
Q ss_pred CCcHHHHHHHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhc--cCCCCCC
Q 026585 53 GTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEI--AKSIPEN 130 (236)
Q Consensus 53 ~~~w~~~v~~lae~vl~~~g~el~lv~~~~~~~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~--~~~i~~~ 130 (236)
...|-++..++++.+|.+||....++.+..++ ...+..+.- ..|++..++..++..|...|..... ..++|+.
T Consensus 87 ~~~~~~~~~~~l~~~l~~f~v~~~v~~~~~Gp-~vt~~ev~l----~~Gvk~s~i~~l~~dLA~aL~~~~vri~a~iPGk 161 (574)
T 2iut_A 87 SPESLEAMSRLLEIKLKEFGVEVSVDSVHPGP-VITRFEIQP----AAGVKVSRISNLAKDLARSLAVISVRVVEVIPGK 161 (574)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCEEEEEECS-SEEEEEECC----CTTCCHHHHHHTHHHHHHHHTCSCCEEESCCTTS
T ss_pred CHHHHHHHHHHHHHHHHHcCeeEEEEeeecCC-ceEEEEEEc----CCCCCHHHHHHHHHHHHHHhhCcCceEEeccccc
Confidence 34677788889999999999888888877654 334445554 5789999999999999988865421 1256665
Q ss_pred eEEEEecCCCCCCCCChHH
Q 026585 131 TSLEVSSPGVERVVRIPLE 149 (236)
Q Consensus 131 Y~LEVSSPGleRpL~~~~d 149 (236)
-++-+.=|.-.|.....++
T Consensus 162 ~~vgieiPn~~r~~V~l~e 180 (574)
T 2iut_A 162 TTVGIEIPNEDRQMVRFSE 180 (574)
T ss_dssp SCEEEEEECTTCCCCBHHH
T ss_pred ceeEEEcCCCcccEEEHHH
Confidence 4443444554554444443
No 32
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=29.05 E-value=56 Score=23.91 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 148 LELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 148 ~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
..+..++|++|.|+++ +|+... +|.++|.-
T Consensus 13 ~~L~~~i~k~V~V~Lk----------~gr~~~G~L~~fD~~ 43 (96)
T 3bw1_A 13 DLLKLNLDERVYIKLR----------GARTLVGTLQAFDSH 43 (96)
T ss_dssp HHHGGGTTSEEEEEEG----------GGCEEEEEEEEECTT
T ss_pred HHHHHHCCCeEEEEEC----------CCcEEEEEEEEECCC
Confidence 4578999999999998 344433 99999865
No 33
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=28.39 E-value=2.3e+02 Score=26.88 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhc--cCCCCCC--
Q 026585 55 WWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEI--AKSIPEN-- 130 (236)
Q Consensus 55 ~w~~~v~~lae~vl~~~g~el~lv~~~~~~~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~--~~~i~~~-- 130 (236)
.+-++..++++.+|.+||....++.+..++ ...+..++- ..|++..++..++..|...|-.... ..++|+.
T Consensus 42 ~~~~~~~~~l~~~l~~f~v~~~v~~~~~gp-~vt~~e~~l----~~Gv~~~~i~~l~~~la~~l~~~~vri~~~~pgk~~ 116 (512)
T 2ius_A 42 FALEQMARLVEARLADFRIKADVVNYSPGP-VITRFELNL----APGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPY 116 (512)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEEEEECS-SEEEEEEEE----CTTCCTHHHHTTHHHHHHHTTCSCCEEESCCTTSSS
T ss_pred HHHHHHHHHHHHHHHHCCceEEEEeeeeCC-eEEEEEEec----CCCCCHHHHHHHHHHHHHHhccCCcceeccCCCCce
Confidence 344667788999999999999999887654 233444554 5789999999999999988864321 1245554
Q ss_pred eEEEE
Q 026585 131 TSLEV 135 (236)
Q Consensus 131 Y~LEV 135 (236)
..+||
T Consensus 117 vgiev 121 (512)
T 2ius_A 117 VGLEL 121 (512)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 34444
No 34
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=27.86 E-value=54 Score=25.61 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=24.3
Q ss_pred cccccCCCCCCceeccCCcHHHHHHHHHHHHHhhcCCcEEEEE
Q 026585 37 EAYVGDGGAGGGISLAGTWWDKEALAIAEDVCLSFDGDLKIYA 79 (236)
Q Consensus 37 ~~~~~~~~~gg~i~l~~~~w~~~v~~lae~vl~~~g~el~lv~ 79 (236)
=|-+|-|-. |-+| +++.+++.+++...+.++.+|.
T Consensus 114 ~P~IgtG~~-------G~~~-~~v~~ii~~~~~~~~i~v~Vy~ 148 (149)
T 2eee_A 114 MPRIGCGLD-------RLQW-ENVSAMIEEVFEATDIKITVYT 148 (149)
T ss_dssp CCCCCCTTT-------TCCH-HHHHHHHHHHHTTCCCEEEEEC
T ss_pred eCCCCCCCC-------CCCH-HHHHHHHHHHhccCCceEEEEe
Confidence 456666533 5589 5788899999988776666553
No 35
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=27.20 E-value=1e+02 Score=21.76 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=25.2
Q ss_pred CChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 145 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 145 ~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
.-..-+.+++|++|.|+++ +|+... +|.++|.-
T Consensus 15 ~P~~~L~~~~~~~V~V~Lk----------~g~~~~G~L~~~D~~ 48 (83)
T 1mgq_A 15 RPLDALGNSLNSPVIIKLK----------GDREFRGVLKSFDLH 48 (83)
T ss_dssp CTTHHHHHTTTSEEEEEET----------TTEEEEEEEEEECTT
T ss_pred ChHHHHHHhCCCEEEEEEc----------CCcEEEEEEEEECCC
Confidence 3345788999999999998 344333 99999875
No 36
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=26.10 E-value=45 Score=24.68 Aligned_cols=28 Identities=11% Similarity=0.301 Sum_probs=22.7
Q ss_pred HHHHHhhcCCcEEEEEEEEcCCceEEEEEec
Q 026585 64 AEDVCLSFDGDLKIYAFRTLPNSTIKVRIEK 94 (236)
Q Consensus 64 ae~vl~~~g~el~lv~~~~~~~~~lrV~IDk 94 (236)
++|.|++.|.+++++.|. .++++|.+-.
T Consensus 26 IRP~L~~dGGdvelv~v~---~g~V~v~l~G 53 (92)
T 1veh_A 26 IRPTVQEDGGDVIYRGFE---DGIVRLKLQG 53 (92)
T ss_dssp THHHHHHHSCCCCEEEEE---TTEEEECCCC
T ss_pred hhHHHHhcCCeEEEEEEe---CCEEEEEEee
Confidence 678999999999999996 4677776643
No 37
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=25.46 E-value=62 Score=24.90 Aligned_cols=46 Identities=15% Similarity=0.012 Sum_probs=30.0
Q ss_pred CCCCCChHHHhhcCCCeEEEEEeeccccCCCCCC-CCceEEEEEEeCCceEEE
Q 026585 141 ERVVRIPLELERFKDRAMYVKYVGETVTTGSPSE-SDGVFRLISFDMETECCT 192 (236)
Q Consensus 141 eRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~e-g~k~f~L~~vd~e~~~~~ 192 (236)
-+|.-+...+.+|+|++|++.-+-. ... ..+.+.|.+-|+..++|.
T Consensus 8 p~pRVn~s~L~~fvgk~VrivGkV~------~~~~~g~~~~l~s~Dg~~Vtv~ 54 (121)
T 3kdf_A 8 PRSRINAGMLAQFIDKPVCFVGRLE------KIHPTGKMFILSDGEGKNGTIE 54 (121)
T ss_dssp CCEEECGGGGGGGTTCEEEEEEEEE------EECTTSSEEEEECTTSCEEEEE
T ss_pred CcceECHHHHHhhCCCeEEEEEEEE------EEcCCCCEEEEEeCCCCEEEEE
Confidence 3788899999999999999865522 111 233456665555555543
No 38
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=25.31 E-value=2e+02 Score=21.81 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=40.7
Q ss_pred hcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCccccccceeeeeccccccc
Q 026585 152 RFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRL 229 (236)
Q Consensus 152 rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk~~~~~l~ipf~~I~k 229 (236)
.|+|..|.|.-. +--+.| .+..++.+.++++-. ..-|-|+.+... .+++.-.+|++
T Consensus 9 dwiG~~VSI~C~----------d~LGVyQG~I~~V~~~~ItL~ka----------FrNGiplk~~~~--EVtLsa~DI~~ 66 (103)
T 2rm4_A 9 DWIGCAVSIACD----------EVLGVFQGLIKQISAEEITIVRA----------FRNGVPLRKQNA--EVVLKCTDIRS 66 (103)
T ss_dssp GGTTCEEEEEEC----------TTTCEEEEEEEEEETTEEEEEEE----------EETTEECSCSSS--CEEEETTTEEE
T ss_pred ceeceEEEEeeC----------CcceEeeEEEEEcccceeEEhhh----------hhcCcCcCCCCc--eEEEEecchhh
Confidence 689999999887 345678 888999877665322 124444432222 47888889988
Q ss_pred eEEE
Q 026585 230 VRLH 233 (236)
Q Consensus 230 arL~ 233 (236)
..|.
T Consensus 67 L~II 70 (103)
T 2rm4_A 67 IDLI 70 (103)
T ss_dssp EEEE
T ss_pred eeee
Confidence 8774
No 39
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=24.89 E-value=41 Score=26.79 Aligned_cols=46 Identities=15% Similarity=0.048 Sum_probs=30.3
Q ss_pred CCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceEEEEEEeCCceEEE
Q 026585 142 RVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCT 192 (236)
Q Consensus 142 RpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f~L~~vd~e~~~~~ 192 (236)
+|..+...+.+|+|++|++.-+-..- ....+.+.|.+-|...++|.
T Consensus 30 ~pRVN~s~L~~fvGk~VriVGkV~~~-----~~~G~~~~l~s~Dg~~VtV~ 75 (142)
T 2pi2_E 30 RSRINAGMLAQFIDKPVCFVGRLEKI-----HPTGKMFILSDGEGKNGTIE 75 (142)
T ss_dssp CEEECGGGGGGSTTCEEEEEEEEEEE-----CTTSSEEEEECTTSCEEEEE
T ss_pred cceECHHHHHhhCCCEEEEEEEEeEE-----cCCCCEEEEEeCCCcEEEEE
Confidence 78999999999999999987653211 01234456666555555443
No 40
>2v7q_J ATPase inhibitor; ION transport, mitochondrion, transit peptide, inhibitor Pro hydrolase; HET: ATP ADP; 2.1A {Bos taurus} SCOP: h.4.8.1
Probab=24.42 E-value=22 Score=25.17 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=17.2
Q ss_pred ccCCCCCCceeccCCcHHHHHH
Q 026585 40 VGDGGAGGGISLAGTWWDKEAL 61 (236)
Q Consensus 40 ~~~~~~gg~i~l~~~~w~~~v~ 61 (236)
-|-||.||.|-.+|-.|+++-.
T Consensus 6 ~~~ggggGsiReAGgaFGKrEa 27 (66)
T 2v7q_J 6 DNVRSSAGAVRDAGGAFGKREQ 27 (66)
T ss_dssp --CCCCTTHHHHTTCHHHHHHH
T ss_pred CCCCCCCCccccccCcccchHH
Confidence 4668999999999999998743
No 41
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=23.39 E-value=69 Score=24.11 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=18.0
Q ss_pred HhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 150 LERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 150 f~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
+..++|++|.|+++ +|+... +|.++|.-
T Consensus 21 L~~~igk~V~V~Lk----------~G~~~~G~L~~~D~~ 49 (105)
T 4emh_A 21 LNATQGRPILVELK----------NGETFNGHLENCDNY 49 (105)
T ss_dssp -----CCEEEEEET----------TSCEEEEEEEEECTT
T ss_pred HHHhCCCEEEEEEC----------CCCEEEEEEEEEcCC
Confidence 66889999999998 344433 99999864
No 42
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=21.60 E-value=70 Score=22.45 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=23.6
Q ss_pred hHHHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 147 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 147 ~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
...+.+++|++|.|+++ +|+... +|.++|.-
T Consensus 13 ~~~L~~~~~~~V~V~l~----------~g~~~~G~L~~~D~~ 44 (81)
T 1i8f_A 13 GATLQDSIGKQVLVKLR----------DSHEIRGILRSFDQH 44 (81)
T ss_dssp HHHHHTTTTSEEEEEEG----------GGEEEEEEEEEECTT
T ss_pred HHHHHHHCCCeEEEEEc----------CCcEEEEEEEEEcCC
Confidence 35678899999999998 333333 99999865
No 43
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.56 E-value=21 Score=26.44 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=7.7
Q ss_pred cCCCCCCceeccCCcHHHHHHH
Q 026585 41 GDGGAGGGISLAGTWWDKEALA 62 (236)
Q Consensus 41 ~~~~~gg~i~l~~~~w~~~v~~ 62 (236)
+-||.||.|..+|..|+++-.+
T Consensus 7 ~~gggggsir~aggaFgKrEaA 28 (84)
T 1gmj_A 7 NVRSSAGAVRDAGGAFGKREQA 28 (84)
T ss_dssp ------------CHHHHHHHHH
T ss_pred CCCCCCCcccccCCCcccHHHH
Confidence 4488899999999999987443
No 44
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=21.46 E-value=88 Score=23.01 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=23.6
Q ss_pred CCCChH-HHhhcCCCeEEEEEeeccccCCCCCCCCceE-EEEEEeCC
Q 026585 143 VVRIPL-ELERFKDRAMYVKYVGETVTTGSPSESDGVF-RLISFDME 187 (236)
Q Consensus 143 pL~~~~-df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f-~L~~vd~e 187 (236)
....|- =+.+++|..|.|.++ +|+... +|.++|.-
T Consensus 17 ~~~~Pl~lL~~~l~k~V~V~Lk----------~gr~~~G~L~gfD~~ 53 (94)
T 4emk_A 17 MTILPLELIDKCIGSNLWVIMK----------SEREFAGTLVGFDDY 53 (94)
T ss_dssp ---CHHHHHHHTTTSEEEEEES----------SSEEEEEEEEEECTT
T ss_pred ccccCHHHHHHHcCCeEEEEEC----------CCcEEEEEEEEEccc
Confidence 344454 457899999999998 343333 99999864
No 45
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=20.46 E-value=67 Score=23.50 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=22.3
Q ss_pred HHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCC
Q 026585 148 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDME 187 (236)
Q Consensus 148 ~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e 187 (236)
.-+..++|++|.|+++ +|.+.| +|.++|.-
T Consensus 24 ~~L~~~i~k~V~V~Lk----------~g~~~~~G~L~~~D~~ 55 (93)
T 1n9r_A 24 PFLKGLVNHRVGVKLK----------FNSTEYRGTLVSTDNY 55 (93)
T ss_dssp --CGGGTTSEEEEEES----------STTEEEEEEEEECCTT
T ss_pred HHHHHhCCCEEEEEEc----------CCCEEEEEEEEEEccc
Confidence 4567889999999999 442445 99999865
Done!