Query 026586
Match_columns 236
No_of_seqs 127 out of 595
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:57:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00007 (NAP-L) nucleosome as 100.0 9.9E-60 2.1E-64 424.1 20.2 219 9-227 25-284 (337)
2 KOG1507 Nucleosome assembly pr 100.0 7.2E-60 1.6E-64 418.6 16.7 214 14-227 66-344 (358)
3 PTZ00008 (NAP-S) nucleosome as 100.0 8E-56 1.7E-60 370.7 16.7 181 39-226 2-184 (185)
4 PF00956 NAP: Nucleosome assem 100.0 2.2E-54 4.7E-59 377.4 21.3 198 24-222 1-244 (244)
5 KOG1508 DNA replication factor 100.0 2E-33 4.3E-38 246.9 8.3 206 16-227 23-228 (260)
6 PF11629 Mst1_SARAH: C termina 95.8 0.037 8.1E-07 36.4 5.4 37 30-66 10-46 (49)
7 PF07352 Phage_Mu_Gam: Bacteri 90.8 0.97 2.1E-05 36.5 6.7 56 21-76 3-58 (149)
8 COG4396 Mu-like prophage host- 85.0 2.2 4.7E-05 34.4 5.0 61 17-77 14-74 (170)
9 KOG1508 DNA replication factor 76.3 0.045 9.8E-07 48.5 -8.0 136 55-222 16-152 (260)
10 PF07516 SecA_SW: SecA Wing an 65.8 21 0.00046 30.3 6.4 45 28-72 9-53 (214)
11 KOG0574 STE20-like serine/thre 48.7 26 0.00055 32.4 4.1 40 27-66 453-492 (502)
12 KOG3891 Secretory vesicle-asso 45.4 42 0.00092 31.2 5.0 86 17-106 174-270 (436)
13 smart00502 BBC B-Box C-termina 35.6 1E+02 0.0023 22.7 5.3 55 21-75 14-68 (127)
14 PF10417 1-cysPrx_C: C-termina 34.3 14 0.00031 23.1 0.1 14 150-163 10-23 (40)
15 PRK14145 heat shock protein Gr 34.1 1.8E+02 0.0039 24.8 6.8 45 1-45 25-69 (196)
16 PF12998 ING: Inhibitor of gro 34.0 86 0.0019 22.9 4.4 65 14-82 8-75 (105)
17 PRK14082 hypothetical protein; 30.2 73 0.0016 22.3 3.1 10 70-79 54-63 (65)
18 PF05600 DUF773: Protein of un 29.2 2.5E+02 0.0055 27.4 7.8 68 21-88 127-201 (507)
19 PRK13611 photosystem II reacti 29.2 2.6E+02 0.0056 21.4 6.2 64 90-161 6-70 (104)
20 COG3883 Uncharacterized protei 28.8 1.4E+02 0.003 26.7 5.4 34 59-92 99-134 (265)
21 TIGR00963 secA preprotein tran 28.1 1.3E+02 0.0029 30.8 5.8 47 26-72 549-595 (745)
22 COG3074 Uncharacterized protei 27.8 2.3E+02 0.005 20.2 5.5 64 16-81 6-69 (79)
23 COG1382 GimC Prefoldin, chaper 26.2 2.4E+02 0.0053 22.1 5.8 27 17-43 2-28 (119)
24 TIGR03714 secA2 accessory Sec 26.1 1.7E+02 0.0036 30.2 6.1 47 27-73 574-620 (762)
25 PRK15422 septal ring assembly 25.9 2E+02 0.0043 21.0 4.8 30 15-44 5-34 (79)
26 PF07361 Cytochrom_B562: Cytoc 25.5 2.9E+02 0.0063 20.7 6.1 40 21-60 53-103 (103)
27 PRK01546 hypothetical protein; 25.4 1.4E+02 0.0029 21.8 4.0 42 19-61 2-43 (79)
28 PF04902 Nab1: Conserved regio 25.1 1.2E+02 0.0026 24.9 4.0 12 4-15 6-17 (166)
29 PRK12904 preprotein translocas 24.3 1.9E+02 0.0041 30.1 6.2 46 27-72 606-651 (830)
30 PRK12326 preprotein translocas 24.0 1.8E+02 0.004 29.9 5.9 45 28-72 577-621 (764)
31 PF05979 DUF896: Bacterial pro 24.0 2.6E+02 0.0056 19.5 5.0 41 22-63 2-42 (65)
32 PRK12902 secA preprotein trans 23.8 1.9E+02 0.004 30.5 6.0 46 27-72 721-766 (939)
33 PRK02539 hypothetical protein; 23.7 1.7E+02 0.0037 21.6 4.2 43 20-63 2-44 (85)
34 PRK12903 secA preprotein trans 22.9 2.1E+02 0.0045 30.1 6.1 46 27-72 570-615 (925)
35 PRK09200 preprotein translocas 22.7 2.1E+02 0.0045 29.6 6.1 48 26-73 576-623 (790)
36 PF00284 Cytochrom_B559a: Lume 22.7 44 0.00095 21.1 0.8 9 124-132 10-18 (40)
37 PRK12906 secA preprotein trans 22.3 2.1E+02 0.0047 29.6 6.1 46 27-72 587-632 (796)
38 PF15290 Syntaphilin: Golgi-lo 22.0 3.9E+02 0.0085 24.2 6.9 24 87-110 136-159 (305)
39 PRK13103 secA preprotein trans 21.8 2.2E+02 0.0048 29.9 6.1 45 28-72 625-669 (913)
40 PF06784 UPF0240: Uncharacteri 21.6 49 0.0011 27.7 1.2 34 78-111 41-74 (179)
41 PRK01631 hypothetical protein; 21.6 1.7E+02 0.0036 21.2 3.7 41 22-63 3-43 (76)
42 PF08557 Lipid_DES: Sphingolip 21.1 48 0.001 20.8 0.8 17 59-75 12-28 (39)
43 CHL00122 secA preprotein trans 21.1 2.3E+02 0.005 29.6 6.0 47 27-73 663-709 (870)
44 PF14389 Lzipper-MIP1: Leucine 21.0 2.4E+02 0.0052 20.6 4.7 27 17-43 50-76 (88)
45 PRK13104 secA preprotein trans 20.4 2.5E+02 0.0054 29.5 6.2 45 28-72 621-665 (896)
46 PF14992 TMCO5: TMCO5 family 20.3 3E+02 0.0065 24.8 5.9 55 26-83 149-220 (280)
No 1
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=100.00 E-value=9.9e-60 Score=424.07 Aligned_cols=219 Identities=30% Similarity=0.582 Sum_probs=191.2
Q ss_pred chhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhc----------cCchhHH
Q 026586 9 TKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWL 78 (236)
Q Consensus 9 ~~~~~e~~~~~~~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~----------~IP~FW~ 78 (236)
..++++.+..||+.+++++.+|+.||.++..|+.++++++++|+++|.++++|+|++|++||+ |||+||+
T Consensus 25 ~~~~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e~~~~gIP~FWl 104 (337)
T PTZ00007 25 IELDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAEIGTPGLPQFWL 104 (337)
T ss_pred cccccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccccccCCcccHHH
Confidence 345567788999999999999999999999999999999999999999999999999999999 6999999
Q ss_pred HHHhhhhhhhcccCcchHHhhcCcceeEEEEccCCC-cceEEEEEecCCCcccCceEEEEEEeeCCC---CC--eeeeec
Q 026586 79 TAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVK-SGYSITFNFSPNPYFEDNKLTKTFTFLDDD---GS--MKITAT 152 (236)
Q Consensus 79 ~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~-~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~---g~--~~~~~t 152 (236)
+||+||+.++.+|+++|++||+||+||+|++..+.. .||+|+|+|++||||+|++|||+|++.... |+ ..+++|
T Consensus 105 ~vL~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~p~~~~~~~t 184 (337)
T PTZ00007 105 TAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVAT 184 (337)
T ss_pred HHHHcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCCceeecceee
Confidence 999999999999999999999999999999887654 899999999999999999999999987423 33 246899
Q ss_pred cccccCCCCCCCccccccCCCC-----c----cccccccccccccCCCCCcc-----C-----------CchHHHHHHHh
Q 026586 153 SIKWKEGMGIPNGVNHEKKGNK-----R----PLAEESFFTWFSDTQEKDTI-----D-----------GIQDEVAEIIK 207 (236)
Q Consensus 153 ~I~Wk~gk~lt~~~~~~k~~~~-----~----~~~~~SFF~fF~~~~~~~~~-----~-----------~~d~ei~~~i~ 207 (236)
+|+||+|++||++.+++|++++ | +.+..|||+||+++..++.. + +.|++||++|+
T Consensus 185 ~I~WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~~DyeiG~~ik 264 (337)
T PTZ00007 185 EIDWKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVETDYEIGITIR 264 (337)
T ss_pred eceeeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHHHhHHHHHHHH
Confidence 9999999999998776554433 2 34679999999998766321 0 14779999999
Q ss_pred hccccchhhhhccCCCcccc
Q 026586 208 EDLWPNPLTYFNNEADEEEF 227 (236)
Q Consensus 208 ~~i~p~al~yy~~~~~~~~~ 227 (236)
++|||+||.||+|++.+++.
T Consensus 265 d~IIP~AV~yftGea~d~~~ 284 (337)
T PTZ00007 265 DKLIPYAVYWFLGEAIDEDS 284 (337)
T ss_pred HhcccccHHhhCCCcccccc
Confidence 99999999999999665443
No 2
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.2e-60 Score=418.60 Aligned_cols=214 Identities=33% Similarity=0.628 Sum_probs=190.0
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhh-----------------------
Q 026586 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------------------- 70 (236)
Q Consensus 14 e~~~~~~~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI----------------------- 70 (236)
+++..||+.|++||.+|++||.+...++.+|.+++++||+||.++++|||++|++||
T Consensus 66 ~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~ 145 (358)
T KOG1507|consen 66 DMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNL 145 (358)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCccccccccccccccccc
Confidence 788899999999999999999999999999999999999999999999999999998
Q ss_pred ------------ccCchhHHHHHhhhhhhhcccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCceEEEEE
Q 026586 71 ------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTF 138 (236)
Q Consensus 71 ------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~ 138 (236)
+|||+||+|||+|+++++++|+++|++||+||+||++.+.+++..||+|.|+|.+||||+|++|||+|
T Consensus 146 ~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY 225 (358)
T KOG1507|consen 146 AEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTY 225 (358)
T ss_pred ccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeee
Confidence 26999999999999999999999999999999999999998867999999999999999999999999
Q ss_pred Eee---CCCCC------e--eeeeccccccCCCCCCCccccccCCC-----C----ccccccccccccccCCCCCcc--C
Q 026586 139 TFL---DDDGS------M--KITATSIKWKEGMGIPNGVNHEKKGN-----K----RPLAEESFFTWFSDTQEKDTI--D 196 (236)
Q Consensus 139 ~~~---~~~g~------~--~~~~t~I~Wk~gk~lt~~~~~~k~~~-----~----~~~~~~SFF~fF~~~~~~~~~--~ 196 (236)
++. +.+++ . .|+||.|+|++|||||++.+.+|+++ . ++++..||||||+|+..++.. +
T Consensus 226 ~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ipd~~d~D 305 (358)
T KOG1507|consen 226 FLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIPDEEDLD 305 (358)
T ss_pred eeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCCcccccC
Confidence 998 32333 3 47999999999999999876554322 1 246889999999999988322 1
Q ss_pred C--------chHHHHHHHhhccccchhhhhccCCCcccc
Q 026586 197 G--------IQDEVAEIIKEDLWPNPLTYFNNEADEEEF 227 (236)
Q Consensus 197 ~--------~d~ei~~~i~~~i~p~al~yy~~~~~~~~~ 227 (236)
+ .|++||+.||+.|||+||.||+|++.++++
T Consensus 306 ed~~~~~L~~DyeIG~~lr~~IIPrAV~~fTGea~e~~~ 344 (358)
T KOG1507|consen 306 EDDLEELLELDYEIGETLRDKIIPRAVLWFTGEALEDED 344 (358)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhheeeeeccccccccc
Confidence 1 468999999999999999999999755443
No 3
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=100.00 E-value=8e-56 Score=370.75 Aligned_cols=181 Identities=29% Similarity=0.597 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhccCchhHHHHHhhhhhhhcccCcchHHhhcCcceeEEEEccCCCcceE
Q 026586 39 KINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118 (236)
Q Consensus 39 ~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~~~f~ 118 (236)
+|+.++++++++|+++|.++++|+|++|++||+|||+||++||+||+.++ +|+++|+++|+||+||+|+...+++.||+
T Consensus 2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~ 80 (185)
T PTZ00008 2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYK 80 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEE
Confidence 47889999999999999999999999999999999999999999999999 99999999999999999997555578999
Q ss_pred EEEEecC--CCcccCceEEEEEEeeCCCCCeeeeeccccccCCCCCCCccccccCCCCccccccccccccccCCCCCccC
Q 026586 119 ITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTID 196 (236)
Q Consensus 119 l~F~F~~--NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~lt~~~~~~k~~~~~~~~~~SFF~fF~~~~~~~~~~ 196 (236)
|+|+|++ ||||+|++|||+|++.. +++.++++|+|+||+|+|+|.+..++++..+++.+..|||+||+++..+
T Consensus 81 i~F~F~~~~N~yF~n~~LtK~y~~~~-~~~~~~~~t~I~Wk~gkn~t~~~~kk~~~~~~~~~~~SFF~fF~~~~~~---- 155 (185)
T PTZ00008 81 ITLIFDEKAKEFMEPLVLVKHVIFKN-NQEKVVEVTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQ---- 155 (185)
T ss_pred EEEEECCCCCCCcCCCEEEEEEEEec-CCCceeeeeecccCCCCCcceeeeeccCccccCCCCCChhhcCCCCccc----
Confidence 9999965 89999999999999987 6667889999999999999988765433334456779999999987543
Q ss_pred CchHHHHHHHhhccccchhhhhccCCCccc
Q 026586 197 GIQDEVAEIIKEDLWPNPLTYFNNEADEEE 226 (236)
Q Consensus 197 ~~d~ei~~~i~~~i~p~al~yy~~~~~~~~ 226 (236)
.+++||++|+++|||+||.||+|++.+++
T Consensus 156 -~~~eIg~~i~e~i~P~av~yy~ge~~~~~ 184 (185)
T PTZ00008 156 -DRPDVGEIIRREIWHAPLLYYLDTVSIDD 184 (185)
T ss_pred -CcHHHHHHHHHhhccchHHhhCCcccccc
Confidence 57999999999999999999999977654
No 4
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=100.00 E-value=2.2e-54 Score=377.37 Aligned_cols=198 Identities=41% Similarity=0.779 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc-------------------CchhHHHHHhhh
Q 026586 24 VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS-------------------IPDFWLTAFISH 84 (236)
Q Consensus 24 ~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~-------------------IP~FW~~vl~n~ 84 (236)
+++|.+|+.||.+++.++.++.+++++|+++|.++++|+|++|++||+| ||+||++||.||
T Consensus 1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~~~~~~~~~~~~~gIP~FW~~vl~n~ 80 (244)
T PF00956_consen 1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTEIEWEERQEEKPKGIPGFWLTVLKNH 80 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHH-----SSSTTSTTHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccccccccccchhhccccCCCCccccccccC
Confidence 5789999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhhcccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCceEEEEEEeeCCCCC------eeeeeccccccC
Q 026586 85 PALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGS------MKITATSIKWKE 158 (236)
Q Consensus 85 ~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~g~------~~~~~t~I~Wk~ 158 (236)
+.++++|++.|.++|+||+||+|++..++..+|+|+|+|++||||+|++|+|+|++.. .+. .++++|+|+||+
T Consensus 81 ~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~-~~~~~~~~~~~~~~t~I~Wk~ 159 (244)
T PF00956_consen 81 PLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKK-EGDEEDPDELKSESTPIDWKP 159 (244)
T ss_dssp HHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEES-SSSTTTT-EEEEEE---EBST
T ss_pred chhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEec-cCCCCCCCcceeeeecccccC
Confidence 9999999999999999999999999988789999999999999999999999999998 443 789999999999
Q ss_pred CCCCCCccccccCCCC---------ccccccccccccccCCCCCcc----C--------CchHHHHHHHhhccccchhhh
Q 026586 159 GMGIPNGVNHEKKGNK---------RPLAEESFFTWFSDTQEKDTI----D--------GIQDEVAEIIKEDLWPNPLTY 217 (236)
Q Consensus 159 gk~lt~~~~~~k~~~~---------~~~~~~SFF~fF~~~~~~~~~----~--------~~d~ei~~~i~~~i~p~al~y 217 (236)
|+++|.+...++++++ .....+|||+||+++..+++. + ..+++||++|+++|||+||.|
T Consensus 160 gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~e~~~~~~~~~~~~d~ei~~~i~d~i~P~av~y 239 (244)
T PF00956_consen 160 GKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDDEEEDEDEEEEIEDDFEIGEIIKDDIIPNAVKY 239 (244)
T ss_dssp TTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTSSSTCHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred CCCccchhhhhcccccccccccceeecccCcchhhhcccCCCCcccccccchhhHHHHhhccHHHHHHHHhheechHHHH
Confidence 9999998766543322 234668999999977554211 1 147899999999999999999
Q ss_pred hccCC
Q 026586 218 FNNEA 222 (236)
Q Consensus 218 y~~~~ 222 (236)
|+|+|
T Consensus 240 y~gea 244 (244)
T PF00956_consen 240 YTGEA 244 (244)
T ss_dssp HHTCT
T ss_pred hCCCC
Confidence 99985
No 5
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=100.00 E-value=2e-33 Score=246.85 Aligned_cols=206 Identities=45% Similarity=0.835 Sum_probs=184.3
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhccCchhHHHHHhhhhhhhcccCcch
Q 026586 16 AEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEED 95 (236)
Q Consensus 16 ~~~~~~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D 95 (236)
....+.++..+++.|++||.+++.++++..+++++++++|...++|+|++|+.||+.||+||.+++.|||.++.+|...|
T Consensus 23 l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii~~i~~fw~~~~~~hp~~~~~i~~~~ 102 (260)
T KOG1508|consen 23 LSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELIKEIPNFWVTAFLNHPTLSEWIPEED 102 (260)
T ss_pred cccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHHhhcccceeEEEecCCcHhhhhhhhh
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCceEEEEEEeeCCCCCeeeeeccccccCCCCCCCccccccCCCCc
Q 026586 96 QKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKR 175 (236)
Q Consensus 96 ~~iL~~L~dI~ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~lt~~~~~~k~~~~~ 175 (236)
.+++.||.++.|+.+.+...|+++.|+|.+|+||+|.+++|+|++.. .|.+++.+|+|.|+.|+++.........++++
T Consensus 103 ~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~-~~~~~s~~t~i~w~~~~~~~~~~~~~~~~~k~ 181 (260)
T KOG1508|consen 103 EEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKE-SGKPSSESTPISWKEGKPLPNPVKRGELKNKN 181 (260)
T ss_pred hhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeec-ccCcccccccccccCCCCCccccccccccccc
Confidence 99999999999999988899999999999999999999999999998 78788899999999999987655422222344
Q ss_pred cccccccccccccCCCCCccCCchHHHHHHHhhccccchhhhhccCCCcccc
Q 026586 176 PLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEF 227 (236)
Q Consensus 176 ~~~~~SFF~fF~~~~~~~~~~~~d~ei~~~i~~~i~p~al~yy~~~~~~~~~ 227 (236)
.....|||.||+.+..++ .++|+++|++.+||++++||+....+...
T Consensus 182 ~~~~~s~f~wf~~~~~~~-----~d~i~ei~~~~~~~~~~~~~~~~~~~~~~ 228 (260)
T KOG1508|consen 182 GDGPKSFFEWFSDTSLKE-----FDEILEIIKDELWPNPLQYYLEPDGEEAS 228 (260)
T ss_pred CcccccHHHHHHhccCCC-----ccchhhhhhcccccchhhhhccccccccc
Confidence 456799999999998764 34899999999999999999877544433
No 6
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=95.75 E-value=0.037 Score=36.40 Aligned_cols=37 Identities=27% Similarity=0.567 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhh
Q 026586 30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66 (236)
Q Consensus 30 L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR 66 (236)
+..||..+..|..++++|+-+|++.|..+++|+.+.-
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAi 46 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAI 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 4567899999999999999999999999999998753
No 7
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=90.82 E-value=0.97 Score=36.50 Aligned_cols=56 Identities=18% Similarity=0.374 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhccCchh
Q 026586 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76 (236)
Q Consensus 21 ~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~F 76 (236)
.++-.++..+..+|.++..++..+..++.++...|.....|+-.+...+-.+|-.|
T Consensus 3 ~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y 58 (149)
T PF07352_consen 3 EEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAY 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999998877776666555
No 8
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=85.01 E-value=2.2 Score=34.41 Aligned_cols=61 Identities=18% Similarity=0.370 Sum_probs=53.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhccCchhH
Q 026586 17 EQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFW 77 (236)
Q Consensus 17 ~~~~~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW 77 (236)
...-.+|...|..|-+||.|...|+.++..++.+++..|..+..|+-+.-..+.++|..|.
T Consensus 14 ~q~~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yC 74 (170)
T COG4396 14 AQDKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYC 74 (170)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444678899999999999999999999999999999999999999988877777777663
No 9
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=76.31 E-value=0.045 Score=48.54 Aligned_cols=136 Identities=13% Similarity=0.049 Sum_probs=85.1
Q ss_pred HHHhhchhHHhhhhhhccCchhHHHHHhhhhhhhcccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCceE
Q 026586 55 YSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKL 134 (236)
Q Consensus 55 ~~~~~~Pl~~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~~~f~l~F~F~~NpyF~N~~L 134 (236)
-.... +...+|...++.++++|..|-.....+. ...+..+|+ ...+-..|..|+|+++..|
T Consensus 16 ~e~~~-~~l~~~~~~~~~~~~~l~~i~~e~~~~~---~~a~~~~l~---------------l~~~~~~~r~p~~~~r~~i 76 (260)
T KOG1508|consen 16 MERRK-EHLSRRGREIEEALETLENIQHELDRMN---AKAEVEVLK---------------LEQKFNRFRRPVYEKRREL 76 (260)
T ss_pred ccccc-cccccchhHHHhhhHHHHHHHHHhhhhh---hhhHHHHHH---------------HHHHHHhhhCchhhhhhHH
Confidence 33344 8999999999999999987654333222 122222221 1122344678999999999
Q ss_pred EEEEEeeCCCCC-eeeeeccccccCCCCCCCccccccCCCCccccccccccccccCCCCCccCCchHHHHHHHhhccccc
Q 026586 135 TKTFTFLDDDGS-MKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPN 213 (236)
Q Consensus 135 ~K~~~~~~~~g~-~~~~~t~I~Wk~gk~lt~~~~~~k~~~~~~~~~~SFF~fF~~~~~~~~~~~~d~ei~~~i~~~i~p~ 213 (236)
+|+|.-.- +. ...+++.++|-.+.+......- .......|+++++..... ..+++...+.+.+|-+
T Consensus 77 i~~i~~fw--~~~~~~hp~~~~~i~~~~~e~~~~l------~~~~v~e~~~~~sg~~~~-----~~f~~ney~~~~~~~k 143 (260)
T KOG1508|consen 77 IKEIPNFW--VTAFLNHPTLSEWIPEEDEEALHYL------HNLEVEELGDIKSGYRIK-----FSFEINEYFTNDLLVK 143 (260)
T ss_pred Hhhcccce--eEEEecCCcHhhhhhhhhhhhhccc------hHHHHHHhccccccCeee-----eeeccchhcccchhce
Confidence 99974211 21 2348889999887664432100 112345577777766543 3456777888999999
Q ss_pred hhhhhccCC
Q 026586 214 PLTYFNNEA 222 (236)
Q Consensus 214 al~yy~~~~ 222 (236)
.++|+....
T Consensus 144 e~~~~~~~~ 152 (260)
T KOG1508|consen 144 EFQYKESGK 152 (260)
T ss_pred eeeeecccC
Confidence 998887654
No 10
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=65.81 E-value=21 Score=30.26 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 026586 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (236)
Q Consensus 28 ~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 72 (236)
.++...|+..+..+-...+.+++...--+.+++-+|.+|+.|+.+
T Consensus 9 ~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~ 53 (214)
T PF07516_consen 9 KSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEG 53 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456667999999999999999999999999999999999999976
No 11
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=48.70 E-value=26 Score=32.43 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhh
Q 026586 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66 (236)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR 66 (236)
.-.|..||..+..+.-...+++.+|.++|..+++|+|+.-
T Consensus 453 ~~~~e~Lq~rl~alDpmme~eieelrq~y~skrqpIldai 492 (502)
T KOG0574|consen 453 NITLEELQMRLKALDPMMEREIEELRQRYTSKRQPILDAI 492 (502)
T ss_pred hccHHHHHHHHHhcCHHHHHHHHHHHHHHhhccccHHHHh
Confidence 3457889999999999999999999999999999999754
No 12
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.39 E-value=42 Score=31.17 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=58.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhc--------cCchhHHHHHhhhhhhh
Q 026586 17 EQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK--------SIPDFWLTAFISHPALG 88 (236)
Q Consensus 17 ~~~~~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~--------~IP~FW~~vl~n~~~l~ 88 (236)
..|+|.+-..+++....|......-..|.+--+..-+|-. -+-..|.-+++ .+-+||..+-.....|+
T Consensus 174 qELDPdt~k~meKFRkaQt~Vr~aK~nfDklkmD~~QKVD----LL~AsRcNllSh~Lt~YqteL~~f~~Kta~tf~ti~ 249 (436)
T KOG3891|consen 174 QELDPDTDKQMEKFRKAQTQVRSAKENFDKLKMDVCQKVD----LLGASRCNLLSHVLTTYQTELLEFWSKTARTFETIH 249 (436)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHhccchhhhHHHHHHh----HhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999998877666555443333222222 23344554443 46899999887777776
Q ss_pred ccc---CcchHHhhcCcceeE
Q 026586 89 ELL---SEEDQKIFRYLSSLE 106 (236)
Q Consensus 89 ~~i---~~~D~~iL~~L~dI~ 106 (236)
+.+ .+.|..+|++|.+=.
T Consensus 250 ea~~~y~~YdF~~Lk~L~~~~ 270 (436)
T KOG3891|consen 250 EACIGYNPYDFEILKHLQDGT 270 (436)
T ss_pred HHhcCCCccchHHHHHhccCC
Confidence 554 489999999998643
No 13
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=35.58 E-value=1e+02 Score=22.72 Aligned_cols=55 Identities=9% Similarity=0.364 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhccCch
Q 026586 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD 75 (236)
Q Consensus 21 ~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~ 75 (236)
+........+..++..+..++.+.......+...|..++.-+-+++..++..|..
T Consensus 14 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 14 KKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667777777788888888888899988888888888888865544
No 14
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=34.30 E-value=14 Score=23.08 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=11.9
Q ss_pred eeccccccCCCCCC
Q 026586 150 TATSIKWKEGMGIP 163 (236)
Q Consensus 150 ~~t~I~Wk~gk~lt 163 (236)
..||.+|++|.++.
T Consensus 10 v~tPanW~pGd~~i 23 (40)
T PF10417_consen 10 VATPANWKPGDDVI 23 (40)
T ss_dssp SBBCTTTCTTSGEB
T ss_pred cccCcCCCCCCCeE
Confidence 57999999998854
No 15
>PRK14145 heat shock protein GrpE; Provisional
Probab=34.08 E-value=1.8e+02 Score=24.75 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=22.8
Q ss_pred CCCCccccchhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026586 1 MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEAS 45 (236)
Q Consensus 1 ~~~~~~k~~~~~~e~~~~~~~~~~~~i~~L~~lQ~e~~~le~~~~ 45 (236)
|-+||.--+-.+.......+.++...-..|..++.++..+..++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~le~e~~el~d~~l 69 (196)
T PRK14145 25 MEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLDIAQ 69 (196)
T ss_pred cCCCcHHHHHhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333333334445555555545556666666666555543
No 16
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=33.99 E-value=86 Score=22.92 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=41.2
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch---hHHhhhhhhccCchhHHHHHh
Q 026586 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKP---VYDKRNDIIKSIPDFWLTAFI 82 (236)
Q Consensus 14 e~~~~~~~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~P---l~~kR~eiI~~IP~FW~~vl~ 82 (236)
|.+..+|.+++..+..++.+..+...+..+. .+.-.+|.+.... --.++...+..|-.=+..++.
T Consensus 8 d~~~~LP~el~r~l~~irelD~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~ 75 (105)
T PF12998_consen 8 DSLENLPAELQRNLTLIRELDAKSQDLLEEL----DQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALE 75 (105)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999988887755554433 3344444443322 112666777777766666554
No 17
>PRK14082 hypothetical protein; Provisional
Probab=30.22 E-value=73 Score=22.26 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=7.3
Q ss_pred hccCchhHHH
Q 026586 70 IKSIPDFWLT 79 (236)
Q Consensus 70 I~~IP~FW~~ 79 (236)
-..+||||--
T Consensus 54 ~~e~PGF~ef 63 (65)
T PRK14082 54 CQEVPGFWEF 63 (65)
T ss_pred cccCCcHHHh
Confidence 3578999953
No 18
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=29.22 E-value=2.5e+02 Score=27.37 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHH----hhhh---hhccCchhHHHHHhhhhhhh
Q 026586 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYD----KRND---IIKSIPDFWLTAFISHPALG 88 (236)
Q Consensus 21 ~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~----kR~e---iI~~IP~FW~~vl~n~~~l~ 88 (236)
|.+++.+.++.+.+.++.+-+.++.+-....+.+|.+.++-+== =|.+ +++.+|.++..+......+.
T Consensus 127 P~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~~~~~i~~~i~~l~ 201 (507)
T PF05600_consen 127 PALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELLELVKELPSLFDEIVEAISDLQ 201 (507)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56788888888889999999999988888888888877654321 1333 45678998888776554443
No 19
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=29.21 E-value=2.6e+02 Score=21.41 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=41.5
Q ss_pred ccCcchHHhhcCcceeEEEEccCCCcceEEEEEec-CCCcccCceEEEEEEeeCCCCCeeeeeccccccCCCC
Q 026586 90 LLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFS-PNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMG 161 (236)
Q Consensus 90 ~i~~~D~~iL~~L~dI~ve~~~d~~~~f~l~F~F~-~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~ 161 (236)
++..-|+. +.+|++....+ ...=+.+|.|. |+. + ...++- .++.+++|..+........-.|+.
T Consensus 6 F~~Gi~E~----~p~VrLtRsrd-g~~g~a~f~F~~~~~-~-~~~itg-m~liDeEGei~tr~v~~KFvnGkp 70 (104)
T PRK13611 6 FSPGIPEV----PTQVRLLKSKT-GKRGSAIFRFEDLKS-D-TQNILG-MRMIDEEGELTTRNIKAKFLNGEF 70 (104)
T ss_pred EecCCCCC----CCceEEEEccC-CCccEEEEEEcCCcc-c-ccceee-EEEEccCCcEEEEecceEEECCCc
Confidence 34445552 78999998776 45557899995 566 3 355666 444444888666656666666664
No 20
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.75 E-value=1.4e+02 Score=26.71 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=22.0
Q ss_pred hchhHHhhhhh--hccCchhHHHHHhhhhhhhcccC
Q 026586 59 RKPVYDKRNDI--IKSIPDFWLTAFISHPALGELLS 92 (236)
Q Consensus 59 ~~Pl~~kR~ei--I~~IP~FW~~vl~n~~~l~~~i~ 92 (236)
++-+|.+|..- +.|=..+...|+.+..-|+.+|+
T Consensus 99 r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~Is 134 (265)
T COG3883 99 RQELLKKRARAMQVNGTATSYIDVILNSKSFSDLIS 134 (265)
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHH
Confidence 34455555332 24666678899998888887775
No 21
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=28.12 E-value=1.3e+02 Score=30.82 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 026586 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (236)
Q Consensus 26 ~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 72 (236)
.-..+...|+..+..+-...+.+++...--+.+++-+|.+|++++.+
T Consensus 549 ~~~~~~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iY~~R~~il~~ 595 (745)
T TIGR00963 549 VTRALESAQKRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILES 595 (745)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcc
Confidence 34566678999999999999999999999999999999999999965
No 22
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.75 E-value=2.3e+02 Score=20.21 Aligned_cols=64 Identities=16% Similarity=0.355 Sum_probs=39.4
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhccCchhHHHHH
Q 026586 16 AEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAF 81 (236)
Q Consensus 16 ~~~~~~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~FW~~vl 81 (236)
...+...++++|+.+.-||.+++.|-.+...- .-+..-....+.-++++++-++.--.=|..-|
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l--~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSL--SQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999887665321 11111122333445566666665556665544
No 23
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.18 E-value=2.4e+02 Score=22.08 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026586 17 EQIDSELVLSIEKLQEIQDELEKINEE 43 (236)
Q Consensus 17 ~~~~~~~~~~i~~L~~lQ~e~~~le~~ 43 (236)
+.+||++.+.+..+..+|.++..+-.+
T Consensus 2 ~~lpp~~q~~l~q~QqLq~ql~~~~~q 28 (119)
T COG1382 2 EQLPPEVQAQLAQLQQLQQQLQKVILQ 28 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999887644
No 24
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=26.09 E-value=1.7e+02 Score=30.21 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhccC
Q 026586 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSI 73 (236)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~I 73 (236)
-..+...|+..+..+-...+.+++...--+.+++-+|.+|+.|+.+-
T Consensus 574 ~~~i~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iy~~R~~il~~~ 620 (762)
T TIGR03714 574 RKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEGS 620 (762)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45666789999999999999999999999999999999999999653
No 25
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.89 E-value=2e+02 Score=20.95 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=24.7
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026586 15 NAEQIDSELVLSIEKLQEIQDELEKINEEA 44 (236)
Q Consensus 15 ~~~~~~~~~~~~i~~L~~lQ~e~~~le~~~ 44 (236)
....|...++++|+.+.-||.+++.+..+.
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn 34 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667789999999999999999887764
No 26
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=25.51 E-value=2.9e+02 Score=20.73 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhc
Q 026586 21 SELVLSIEKLQEIQDELEKINEEA-----------SEKVLEVEQKYSEIRK 60 (236)
Q Consensus 21 ~~~~~~i~~L~~lQ~e~~~le~~~-----------~~e~~~le~k~~~~~~ 60 (236)
+++..-..-|..|..+++.++... .+++..++.+|++.++
T Consensus 53 ~~~~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~r 103 (103)
T PF07361_consen 53 AEVKDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKEYHKKFR 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhcC
Confidence 445566667777777777666543 3466677777777653
No 27
>PRK01546 hypothetical protein; Provisional
Probab=25.43 E-value=1.4e+02 Score=21.78 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 026586 19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKP 61 (236)
Q Consensus 19 ~~~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~P 61 (236)
+++++..+|..|...+++ ..|-.+-..|..+|++.|-+..+-
T Consensus 2 ~~~~~i~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~ 43 (79)
T PRK01546 2 LSHELVERINFLAKKAKA-EGLTEEEQRERQSLREQYLKGFRQ 43 (79)
T ss_pred CcHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999988876 445555556677788877655543
No 28
>PF04902 Nab1: Conserved region in Nab1; InterPro: IPR006986 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This C-terminal region is found only in the Nab1 subfamily.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.05 E-value=1.2e+02 Score=24.94 Aligned_cols=12 Identities=25% Similarity=0.152 Sum_probs=10.2
Q ss_pred Cccccchhhhhc
Q 026586 4 DKGKKTKVEEEN 15 (236)
Q Consensus 4 ~~~k~~~~~~e~ 15 (236)
|+|||.|+++.+
T Consensus 6 lSPKRIKtEdgf 17 (166)
T PF04902_consen 6 LSPKRIKTEDGF 17 (166)
T ss_pred CCccceecccCC
Confidence 899999999654
No 29
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=24.28 E-value=1.9e+02 Score=30.13 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 026586 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (236)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 72 (236)
-..+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 606 ~~~i~~aQ~~~e~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~ 651 (830)
T PRK12904 606 TRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEG 651 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456667999999999999999999999999999999999999975
No 30
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=24.04 E-value=1.8e+02 Score=29.86 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 026586 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (236)
Q Consensus 28 ~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 72 (236)
.++...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 577 ~~i~~aQk~vE~~~~~~Rk~~~~yd~v~~~QR~~iy~~R~~il~~ 621 (764)
T PRK12326 577 DLVDHAQRVAEGQLLEIHANTWRYNQLIAQQRAIIVERRERLLRT 621 (764)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455667999999999999999999999999999999999999965
No 31
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=24.01 E-value=2.6e+02 Score=19.53 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 026586 22 ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (236)
Q Consensus 22 ~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~ 63 (236)
++..+|..|...++.- .|..+-..|..+|++.|-...+--+
T Consensus 2 e~i~RINeLa~K~K~~-gLT~eE~~Eq~~LR~eYl~~fR~~~ 42 (65)
T PF05979_consen 2 EKIDRINELAKKSKEE-GLTEEEKAEQAELRQEYLQNFRGNF 42 (65)
T ss_dssp HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHTTHHHH
T ss_pred cHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899998888744 3444555667778888876655433
No 32
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=23.82 E-value=1.9e+02 Score=30.50 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 026586 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (236)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 72 (236)
-.+|...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 721 ~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~ 766 (939)
T PRK12902 721 TRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG 766 (939)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456667999999999999999999999999999999999999965
No 33
>PRK02539 hypothetical protein; Provisional
Probab=23.70 E-value=1.7e+02 Score=21.58 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 026586 20 DSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (236)
Q Consensus 20 ~~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~ 63 (236)
+.++..+|..|...++. ..|-.+-..|..+|++.|-+..+--+
T Consensus 2 ~~~~I~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 44 (85)
T PRK02539 2 DPKKIARINELAKKKKT-EGLTGEEKVEQAKLREEYIEGYRRSV 44 (85)
T ss_pred CHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999988876 44555555677778888866555433
No 34
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=22.92 E-value=2.1e+02 Score=30.09 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 026586 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (236)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 72 (236)
-.++...|+..+..+-...+.+++...--+.+++-+|.+|++++.+
T Consensus 570 ~~~ie~AQkkvE~~nfdiRK~ll~yDdV~n~QR~~IY~~R~~iL~~ 615 (925)
T PRK12903 570 SKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIA 615 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456668999999999999999999999999999999999999965
No 35
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=22.67 E-value=2.1e+02 Score=29.64 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhccC
Q 026586 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSI 73 (236)
Q Consensus 26 ~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~I 73 (236)
.-..|...|+..+..+-...+.+++...--+.++.-+|.+|+.++.+-
T Consensus 576 ~~~~~~~aQ~~~e~~~~~~R~~~~~~d~~~~~QR~~iy~~R~~~l~~~ 623 (790)
T PRK09200 576 VHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEED 623 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345566689999999999999999999999999999999999999764
No 36
>PF00284 Cytochrom_B559a: Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit family.; InterPro: IPR013082 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The alpha subunit (PsbE) of cytochrome b559, forms a haem-binding heterodimer with the beta subunit (PsbF) (IPR006241 from INTERPRO) within the reaction centre core of PSII. Both PsbE and PsbF are essential components for PSII assembly, and are probably involved in secondary electron transport mechanisms that help to protect PSII from photo-damage []. This domain occurs in the lumenal region of the alpha subunit. It is usually found in conjuction with an N-terminal domain (IPR013081 from INTERPRO).; GO: 0046872 metal ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane; PDB: 1W5C_K 1S5L_e 3BZ2_E 3PRQ_E 2AXT_E 4FBY_R 3PRR_E 3BZ1_E 3KZI_E 3A0H_E ....
Probab=22.65 E-value=44 Score=21.11 Aligned_cols=9 Identities=44% Similarity=1.073 Sum_probs=6.2
Q ss_pred cCCCcccCc
Q 026586 124 SPNPYFEDN 132 (236)
Q Consensus 124 ~~NpyF~N~ 132 (236)
.||+||++.
T Consensus 10 RPneYft~~ 18 (40)
T PF00284_consen 10 RPNEYFTES 18 (40)
T ss_dssp -TTCSS-SS
T ss_pred Ccccccccc
Confidence 489999886
No 37
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=22.34 E-value=2.1e+02 Score=29.57 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 026586 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (236)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 72 (236)
-..+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 587 ~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~il~~ 632 (796)
T PRK12906 587 TRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINE 632 (796)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456667999999999999999999999999999999999999976
No 38
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.98 E-value=3.9e+02 Score=24.19 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=17.4
Q ss_pred hhcccCcchHHhhcCcceeEEEEc
Q 026586 87 LGELLSEEDQKIFRYLSSLEVEDF 110 (236)
Q Consensus 87 l~~~i~~~D~~iL~~L~dI~ve~~ 110 (236)
+.+-+.+.|..|=+|..||.+...
T Consensus 136 mrssL~ekDkGiQKYFvDINiQN~ 159 (305)
T PF15290_consen 136 MRSSLAEKDKGIQKYFVDINIQNK 159 (305)
T ss_pred HHhhhchhhhhHHHHHhhhhhhHh
Confidence 344455778888888888887743
No 39
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=21.80 E-value=2.2e+02 Score=29.91 Aligned_cols=45 Identities=24% Similarity=0.433 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 026586 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (236)
Q Consensus 28 ~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 72 (236)
..+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 625 ~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~~iL~~ 669 (913)
T PRK13103 625 NAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNSLLAA 669 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456667999999999999999999999999999999999999975
No 40
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=21.57 E-value=49 Score=27.67 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=29.5
Q ss_pred HHHHhhhhhhhcccCcchHHhhcCcceeEEEEcc
Q 026586 78 LTAFISHPALGELLSEEDQKIFRYLSSLEVEDFK 111 (236)
Q Consensus 78 ~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~ 111 (236)
..++..+|.+..-|...|..+++.|++|.|+..+
T Consensus 41 ~~~~~~~pe~~eei~~Kd~~L~s~LK~VyV~S~D 74 (179)
T PF06784_consen 41 EEVLEDDPEIKEEISRKDDKLLSRLKDVYVTSKD 74 (179)
T ss_pred HHHhhhChHHHHHHHhhhHHHHHhhceeEeecCC
Confidence 4567788999999999999999999999999654
No 41
>PRK01631 hypothetical protein; Provisional
Probab=21.56 E-value=1.7e+02 Score=21.18 Aligned_cols=41 Identities=10% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 026586 22 ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (236)
Q Consensus 22 ~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~ 63 (236)
++..+|..|...+++ ..|-.+-..|..+|++.|-+..+-.+
T Consensus 3 ~ii~RINeLakK~K~-~gLT~eE~~Eq~~LR~eYl~~fR~~~ 43 (76)
T PRK01631 3 NILFRINELSKKEKA-TGLTVDEKQEQQMLRQNYTQTFRGSL 43 (76)
T ss_pred hHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999888876 44555555677778888876654433
No 42
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=21.13 E-value=48 Score=20.82 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=13.0
Q ss_pred hchhHHhhhhhhccCch
Q 026586 59 RKPVYDKRNDIIKSIPD 75 (236)
Q Consensus 59 ~~Pl~~kR~eiI~~IP~ 75 (236)
-+|+-.+|++||++-|.
T Consensus 12 ~ePH~~RRk~IL~k~Pe 28 (39)
T PF08557_consen 12 DEPHASRRKEILKKHPE 28 (39)
T ss_pred CCccHHHHHHHHHhChH
Confidence 36888899998877654
No 43
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=21.09 E-value=2.3e+02 Score=29.63 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhccC
Q 026586 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSI 73 (236)
Q Consensus 27 i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~I 73 (236)
-..+...|+..+..+-...+.+++...-.+.+++-+|.+|++++.+-
T Consensus 663 ~~~i~~aQ~~vE~~~~~~Rk~ll~yD~v~~~QR~~iY~~R~~iL~~~ 709 (870)
T CHL00122 663 SKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQ 709 (870)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44566789999999999999999999999999999999999999764
No 44
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=21.02 E-value=2.4e+02 Score=20.62 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=22.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026586 17 EQIDSELVLSIEKLQEIQDELEKINEE 43 (236)
Q Consensus 17 ~~~~~~~~~~i~~L~~lQ~e~~~le~~ 43 (236)
..+|+.++.-|..+..+..++..++.+
T Consensus 50 ~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 50 SSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999888888777644
No 45
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=20.37 E-value=2.5e+02 Score=29.50 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 026586 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (236)
Q Consensus 28 ~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~ 72 (236)
..+...|+..+..+-...+.+++...--+++++-+|.+|+.++.+
T Consensus 621 ~~i~~aQ~~vE~~~~~~Rk~ll~yd~V~n~QR~~iY~~R~~iL~~ 665 (896)
T PRK13104 621 RAIENAQRKLEGHHFDVRKQLLDYDNVANDQRQVIYTQRASIMAM 665 (896)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456667999999999999999999999999999999999999965
No 46
>PF14992 TMCO5: TMCO5 family
Probab=20.25 E-value=3e+02 Score=24.80 Aligned_cols=55 Identities=18% Similarity=0.436 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhh---hhhh--------------ccCchhHHHHHhh
Q 026586 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR---NDII--------------KSIPDFWLTAFIS 83 (236)
Q Consensus 26 ~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR---~eiI--------------~~IP~FW~~vl~n 83 (236)
....++.+|..+..++. ++++.-|+++-.+. +--..++ ..+. ++-|-||.++|+=
T Consensus 149 q~~~i~klkE~L~rmE~--ekE~~lLe~el~k~-q~~~s~~~~~~~~~~e~~~~~~e~~~~~~~~~~~wkr~lr~ 220 (280)
T PF14992_consen 149 QANEIKKLKEKLRRMEE--EKEMLLLEKELSKY-QMQDSQSEKPGSELVETIQPNMEKTSLKKNSPTFWKRALRL 220 (280)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hchhhchhccCchhhhhhhccCCcccHHhhhhHHHHHHHHH
Confidence 34455666777766665 67777777664332 2223333 1111 2358899998864
Done!