Query 026587
Match_columns 236
No_of_seqs 128 out of 1155
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:57:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0638 PRE1 20S proteasome, a 100.0 1.3E-49 2.8E-54 335.9 21.2 214 3-219 17-235 (236)
2 PTZ00246 proteasome subunit al 100.0 3.8E-49 8.1E-54 336.9 20.7 218 3-220 19-245 (253)
3 cd03759 proteasome_beta_type_3 100.0 1.3E-47 2.9E-52 315.6 25.2 191 14-204 2-194 (195)
4 cd03757 proteasome_beta_type_1 100.0 2.3E-47 4.9E-52 318.0 25.8 197 9-205 2-208 (212)
5 PRK03996 proteasome subunit al 100.0 3.3E-48 7.2E-53 328.9 20.3 211 3-216 24-239 (241)
6 cd03750 proteasome_alpha_type_ 100.0 4.8E-48 1E-52 325.2 20.3 206 3-213 15-226 (227)
7 PTZ00488 Proteasome subunit be 100.0 2.9E-47 6.4E-52 323.3 24.5 206 11-219 35-241 (247)
8 TIGR03633 arc_protsome_A prote 100.0 2.6E-47 5.6E-52 320.2 22.2 203 3-208 17-224 (224)
9 cd03758 proteasome_beta_type_2 100.0 1.3E-46 2.8E-51 309.2 24.9 186 16-201 2-190 (193)
10 cd03761 proteasome_beta_type_5 100.0 1.9E-46 4.1E-51 307.0 25.5 185 16-201 1-186 (188)
11 cd03762 proteasome_beta_type_6 100.0 6.1E-46 1.3E-50 303.9 25.6 186 16-201 1-186 (188)
12 cd03760 proteasome_beta_type_4 100.0 6.1E-46 1.3E-50 306.1 25.1 188 14-201 1-194 (197)
13 TIGR03690 20S_bact_beta protea 100.0 4.5E-46 9.7E-51 311.6 23.5 203 14-218 1-216 (219)
14 TIGR03634 arc_protsome_B prote 100.0 1.3E-45 2.8E-50 301.2 25.1 184 15-199 1-185 (185)
15 cd03752 proteasome_alpha_type_ 100.0 2.9E-46 6.3E-51 311.6 20.9 192 3-194 17-213 (213)
16 cd03763 proteasome_beta_type_7 100.0 4.4E-45 9.6E-50 299.2 26.0 185 16-201 1-185 (189)
17 KOG0176 20S proteasome, regula 100.0 1.3E-46 2.9E-51 297.5 15.5 209 3-215 22-240 (241)
18 cd03765 proteasome_beta_bacter 100.0 4.4E-45 9.4E-50 307.2 24.7 205 16-222 1-226 (236)
19 cd03751 proteasome_alpha_type_ 100.0 9.1E-46 2E-50 308.2 20.2 190 3-194 18-212 (212)
20 cd03764 proteasome_beta_archea 100.0 1.1E-44 2.3E-49 296.6 25.6 185 16-201 1-186 (188)
21 cd03755 proteasome_alpha_type_ 100.0 1.5E-45 3.3E-50 306.0 20.3 188 3-194 15-207 (207)
22 cd01912 proteasome_beta protea 100.0 2.2E-44 4.8E-49 294.7 25.4 186 16-201 1-187 (189)
23 cd03749 proteasome_alpha_type_ 100.0 4.3E-45 9.4E-50 304.0 21.0 189 3-195 15-211 (211)
24 cd03756 proteasome_alpha_arche 100.0 4.8E-45 1E-49 303.8 21.1 190 3-195 16-210 (211)
25 TIGR03691 20S_bact_alpha prote 100.0 7.2E-45 1.6E-49 305.3 19.6 201 5-213 17-228 (228)
26 cd03754 proteasome_alpha_type_ 100.0 9.4E-45 2E-49 302.8 20.1 190 3-194 16-215 (215)
27 cd01911 proteasome_alpha prote 100.0 1.3E-44 2.7E-49 300.9 20.0 190 3-194 15-209 (209)
28 cd03753 proteasome_alpha_type_ 100.0 2.9E-44 6.2E-49 299.6 20.2 189 3-194 15-213 (213)
29 PF00227 Proteasome: Proteasom 100.0 4E-42 8.8E-47 281.1 23.7 183 12-194 1-190 (190)
30 KOG0178 20S proteasome, regula 100.0 2E-43 4.3E-48 281.9 13.8 220 4-223 20-247 (249)
31 cd01906 proteasome_protease_Hs 100.0 9E-42 1.9E-46 277.2 23.8 179 16-194 1-182 (182)
32 KOG0179 20S proteasome, regula 100.0 1.2E-40 2.6E-45 265.8 20.4 203 5-207 19-233 (235)
33 KOG0181 20S proteasome, regula 100.0 1.5E-41 3.2E-46 268.2 10.6 209 3-216 20-233 (233)
34 KOG0184 20S proteasome, regula 100.0 1.7E-40 3.7E-45 267.0 14.1 201 3-206 22-229 (254)
35 KOG0183 20S proteasome, regula 100.0 8.4E-41 1.8E-45 267.5 11.7 212 3-219 18-236 (249)
36 KOG0174 20S proteasome, regula 100.0 4E-39 8.7E-44 254.3 19.1 209 9-217 13-221 (224)
37 KOG0863 20S proteasome, regula 100.0 2.1E-39 4.5E-44 262.0 14.1 211 4-219 21-239 (264)
38 KOG0177 20S proteasome, regula 100.0 9.7E-38 2.1E-42 245.7 17.4 186 16-201 2-190 (200)
39 KOG0182 20S proteasome, regula 100.0 1.3E-37 2.7E-42 248.9 17.0 215 3-219 23-245 (246)
40 KOG0173 20S proteasome, regula 100.0 1.8E-37 4E-42 253.7 17.9 195 6-201 28-222 (271)
41 KOG0180 20S proteasome, regula 100.0 5.9E-36 1.3E-40 232.3 17.8 194 12-205 5-200 (204)
42 KOG0175 20S proteasome, regula 100.0 8.8E-36 1.9E-40 244.4 17.5 201 12-215 68-269 (285)
43 KOG0185 20S proteasome, regula 100.0 1.7E-35 3.6E-40 240.0 15.9 214 6-221 32-252 (256)
44 PRK05456 ATP-dependent proteas 100.0 9.8E-34 2.1E-38 227.7 19.9 166 15-193 1-171 (172)
45 cd01913 protease_HslV Protease 100.0 6.5E-33 1.4E-37 221.6 20.0 164 16-193 1-170 (171)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 2.5E-32 5.4E-37 218.2 19.3 165 16-193 1-170 (171)
47 cd01901 Ntn_hydrolase The Ntn 100.0 1.4E-29 3E-34 200.0 21.5 160 16-176 1-163 (164)
48 COG5405 HslV ATP-dependent pro 99.7 1.1E-16 2.4E-21 123.8 13.8 169 13-195 2-176 (178)
49 COG3484 Predicted proteasome-t 99.7 2.3E-15 5E-20 120.6 12.7 217 16-234 2-242 (255)
50 PF09894 DUF2121: Uncharacteri 97.0 0.1 2.3E-06 42.4 16.1 150 16-197 2-180 (194)
51 COG4079 Uncharacterized protei 94.5 1.2 2.7E-05 37.6 12.2 151 16-197 2-181 (293)
52 KOG3361 Iron binding protein i 86.7 1 2.2E-05 34.4 3.8 43 127-169 71-113 (157)
53 COG3193 GlcG Uncharacterized p 66.5 10 0.00022 29.5 4.0 39 159-201 5-43 (141)
54 COG5008 PilU Tfp pilus assembl 63.5 15 0.00031 32.2 4.8 71 160-230 44-117 (375)
55 PF07499 RuvA_C: RuvA, C-termi 49.5 12 0.00025 23.1 1.5 33 142-174 12-45 (47)
56 PRK09732 hypothetical protein; 49.1 53 0.0011 25.2 5.4 38 160-201 5-42 (134)
57 PF03928 DUF336: Domain of unk 45.0 37 0.00081 25.6 4.0 38 160-201 1-38 (132)
58 COG0822 IscU NifU homolog invo 32.5 1.8E+02 0.0039 22.8 6.1 56 124-180 43-99 (150)
59 COG1754 Uncharacterized C-term 31.6 46 0.001 29.0 2.8 71 115-190 77-150 (298)
60 COG4245 TerY Uncharacterized p 30.9 88 0.0019 25.7 4.1 44 166-209 22-65 (207)
61 cd06396 PB1_NBR1 The PB1 domai 29.5 75 0.0016 22.2 3.1 38 188-225 39-76 (81)
62 PRK14065 exodeoxyribonuclease 27.4 1.7E+02 0.0037 20.7 4.6 33 147-179 31-63 (86)
63 cd04513 Glycosylasparaginase G 27.0 2.7E+02 0.0058 24.1 6.7 59 140-201 187-249 (263)
64 PF00178 Ets: Ets-domain; Int 26.4 27 0.00058 24.7 0.4 33 190-222 20-52 (85)
65 COG2217 ZntA Cation transport 26.1 2.7E+02 0.0059 27.7 7.4 147 11-181 512-664 (713)
66 PF08622 Svf1: Svf1-like; Int 25.5 1.3E+02 0.0028 26.8 4.6 47 19-67 205-253 (325)
67 PF11211 DUF2997: Protein of u 25.0 1E+02 0.0022 19.2 2.9 33 126-158 2-34 (48)
68 smart00413 ETS erythroblast tr 24.9 38 0.00083 24.1 1.0 33 190-222 20-52 (87)
69 PF04539 Sigma70_r3: Sigma-70 24.8 1.5E+02 0.0032 19.7 4.0 29 71-99 3-31 (78)
70 PF01592 NifU_N: NifU-like N t 24.2 2.1E+02 0.0046 21.3 5.1 63 118-180 30-96 (126)
71 cd04512 Ntn_Asparaginase_2_lik 24.0 3.3E+02 0.0072 23.3 6.7 55 140-200 176-234 (248)
72 KOG3806 Predicted transcriptio 23.8 42 0.0009 27.1 1.1 33 190-222 87-119 (177)
73 KOG0083 GTPase Rab26/Rab37, sm 23.4 92 0.002 24.2 2.9 39 13-55 7-45 (192)
74 PRK11325 scaffold protein; Pro 23.2 2E+02 0.0043 21.6 4.8 52 125-176 42-94 (127)
75 PF06018 CodY: CodY GAF-like d 21.7 3.5E+02 0.0076 21.9 6.1 34 70-103 2-35 (177)
76 COG5469 Predicted metal-bindin 20.4 32 0.0007 26.5 -0.1 58 64-121 38-96 (143)
No 1
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-49 Score=335.90 Aligned_cols=214 Identities=29% Similarity=0.490 Sum_probs=203.1
Q ss_pred ccccCCCCCcccc-ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMG-TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQH 81 (236)
Q Consensus 3 ~~~~~a~~~v~~g-tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 81 (236)
.|.+|+.+++.+| +|+|||+++||||||+|+|.++++++..++.+|||+|+|||+|++||+.+|++.+++++|.+++.|
T Consensus 17 ~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~ 96 (236)
T COG0638 17 FQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLY 96 (236)
T ss_pred HHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHH
Confidence 4678999999986 999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcCc---CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhc
Q 026587 82 TIQLGQPATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (236)
Q Consensus 82 ~~~~~~~~~~~~la~~i~~~~~~~~---rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~ 158 (236)
++.++++++++.+++.+++++|+++ |||+|++||||+|+ ++|+||.+||+|++.+++++|+|+|++.++++||+.|
T Consensus 97 ~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y 175 (236)
T COG0638 97 RLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEY 175 (236)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhc
Confidence 9999999999999999999999986 69999999999999 8999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCC-CeEEEeecCCCCchhhhhccCc
Q 026587 159 KEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE-GVSRKFYPGDTLPLWHEELEPQ 219 (236)
Q Consensus 159 ~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~-g~~~~~l~~~ei~~~l~~~~~~ 219 (236)
+++|+.+||++++.+||+.+.+||..++++++|++|+++ |.+. +.++++..+++.++..
T Consensus 176 ~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~--~~~~~~~~~~~~~~~~ 235 (236)
T COG0638 176 REDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRK--LDGEEIKKLLDDLSEK 235 (236)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEE--cCHHHHHHHHHHHhhc
Confidence 999999999999999999999999988999999999994 5554 8999999888877643
No 2
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.8e-49 Score=336.93 Aligned_cols=218 Identities=16% Similarity=0.257 Sum_probs=204.2
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.|||++|+++|+|+|||+++||||||+|++.+++.++.+++.+|||+|+++++++++|+.+|++.+.+++|.+++.|+
T Consensus 19 ~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 98 (253)
T PTZ00246 19 YQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYR 98 (253)
T ss_pred hHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999988777778999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++.+++++.+++.++..++.+ .|||+|++||||||++.||+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus 99 ~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~ 178 (253)
T PTZ00246 99 YTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQE 178 (253)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHh
Confidence 99999999999999999987764 3799999999999976799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCC----eEEEeecCCCCchhhhhccCcc
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEG----VSRKFYPGDTLPLWHEELEPQN 220 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g----~~~~~l~~~ei~~~l~~~~~~~ 220 (236)
|+++||++||++++++||+.+.++|..++++++|++|+++| ..++.++++||++++.+++...
T Consensus 179 ~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~~~~~~ 245 (253)
T PTZ00246 179 WKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKKVTQEY 245 (253)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999986 2356799999999999986443
No 3
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-47 Score=315.58 Aligned_cols=191 Identities=21% Similarity=0.305 Sum_probs=182.3
Q ss_pred ccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026587 14 MGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKV 93 (236)
Q Consensus 14 ~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (236)
+|+|+|||+++||||||+|++.+++..+.+++.+|||+|++|++++++|..+|++.+.+++|.+++.|+++++.+++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999999998877778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeC-EEEEccChhhhHHHHHhhcCCCCCHHHHHHHH
Q 026587 94 AANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQP-FAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLV 171 (236)
Q Consensus 94 la~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~ 171 (236)
+|++|++.+|.+| +||++++||||||++++|+||.+||+|++.++. ++|+|+|++.++++||+.|+|+||.+||++++
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 161 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETI 161 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 9999999988764 799999999999976789999999999998877 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEee
Q 026587 172 VKAVSLAIARDGASGGVVRTVTINSEGVSRKFY 204 (236)
Q Consensus 172 ~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l 204 (236)
++||+.+.+||..++++++|++|+++|++.+.+
T Consensus 162 ~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 162 SQALLSAVDRDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred HHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence 999999999999999999999999999987654
No 4
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-47 Score=317.99 Aligned_cols=197 Identities=25% Similarity=0.332 Sum_probs=187.6
Q ss_pred CCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCC
Q 026587 9 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQP 88 (236)
Q Consensus 9 ~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (236)
.+.+++|+|+|||+++||||||+|++.+++.++.+++.+|||+|+++++++++|..+|++.+.+++|.+++.|++++|++
T Consensus 2 ~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~ 81 (212)
T cd03757 2 SPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKE 81 (212)
T ss_pred CCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCC
Confidence 56788999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcC--------
Q 026587 89 ATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWK-------- 159 (236)
Q Consensus 89 ~~~~~la~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~-------- 159 (236)
++++.+++++++.+|.+| +||++++||||||++++|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 82 i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 161 (212)
T cd03757 82 MSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVE 161 (212)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCC
Confidence 999999999999998865 59999999999997678999999999999999999999999999999999985
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeec
Q 026587 160 -EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYP 205 (236)
Q Consensus 160 -~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~ 205 (236)
++||++||++++++||+.+.+||..++++++|++|+++|++.+.++
T Consensus 162 ~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~~~ 208 (212)
T cd03757 162 RTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFP 208 (212)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEeec
Confidence 8999999999999999999999999999999999999999876554
No 5
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.3e-48 Score=328.94 Aligned_cols=211 Identities=21% Similarity=0.308 Sum_probs=198.1
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.+||++++++|+|+|||+++||||||+|++.+.+ ++..++.+|||+|++++++++||..+|++.++++++.+++.|+
T Consensus 24 ~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 102 (241)
T PRK03996 24 YQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSP-LIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINR 102 (241)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCc-ccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999854 5567788999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+++++++.+|.+ .|||++++|+||+|+ +||+||.+||+|++.+++++|+|+|+..++++||+.
T Consensus 103 ~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~ 181 (241)
T PRK03996 103 LTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKN 181 (241)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCcHHHHHHHHHh
Confidence 99999999999999999998765 479999999999997 789999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhc
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEEL 216 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~ 216 (236)
|+++|+++||++++++||+.+.++ ..++++++|++|+++|..++.++++|++++++++
T Consensus 182 ~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 182 YKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred cccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHh
Confidence 999999999999999999999875 5678999999999998777789999999999764
No 6
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-48 Score=325.22 Aligned_cols=206 Identities=17% Similarity=0.264 Sum_probs=192.7
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.|||++++++|+|+|||+++||||||+|++.+. .++.+++.+||++|++|++++++|..+|++.+.+++|.+++.|+
T Consensus 15 ~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 93 (227)
T cd03750 15 VQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYY 93 (227)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999985 56677889999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.+|++++++.+++.|++.+|.+ .|||++++|++|||+ .||+||.+||+|++.+++++|+|+|+.+++++||++
T Consensus 94 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~ 172 (227)
T cd03750 94 LVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKR 172 (227)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhh
Confidence 99999999999999999998764 479999999999997 699999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCC-CeEEEeecCCCCchhh
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE-GVSRKFYPGDTLPLWH 213 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~-g~~~~~l~~~ei~~~l 213 (236)
|+++||++||++++++||+.+.+++. ++.+++|++|+++ |.+ .++++||++++
T Consensus 173 ~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~--~~~~~ei~~~~ 226 (227)
T cd03750 173 YNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFR--LLTPAEIKDYL 226 (227)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEE--ECCHHHHHHHh
Confidence 99999999999999999999998764 7899999999996 555 48999988875
No 7
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=2.9e-47 Score=323.32 Aligned_cols=206 Identities=26% Similarity=0.443 Sum_probs=194.6
Q ss_pred CccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 026587 11 PHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPAT 90 (236)
Q Consensus 11 ~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (236)
.+++|+|+|||+++||||||+|++.+.+.++.+++.+|||+|+++++++++|+.+|++.+.+++|.+++.|++++|++++
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 56789999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHH
Q 026587 91 VKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQ 169 (236)
Q Consensus 91 ~~~la~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~ 169 (236)
++.+|++|++++|.+| .|+.+++|+||||+ .||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||.+||++
T Consensus 115 v~~la~~ls~~l~~~R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~ 193 (247)
T PTZ00488 115 VAAASKILANIVWNYKGMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQD 193 (247)
T ss_pred HHHHHHHHHHHHHhcCCCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHH
Confidence 9999999999999884 24555589999996 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCc
Q 026587 170 LVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQ 219 (236)
Q Consensus 170 l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~ 219 (236)
++++||+.+.+||..++++++|++|+++|++. ++++||+++++.++..
T Consensus 194 l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~--l~~~ei~~~l~~~~~~ 241 (247)
T PTZ00488 194 LGRRAIYHATFRDAYSGGAINLYHMQKDGWKK--ISADDCFDLHQKYAAE 241 (247)
T ss_pred HHHHHHHHHHHhccccCCCeEEEEEcCCccEE--CCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999764 9999999999988754
No 8
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.6e-47 Score=320.21 Aligned_cols=203 Identities=22% Similarity=0.335 Sum_probs=191.3
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.|||++++++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|++++++++||+.+|++.+.++++.+++.|+
T Consensus 17 ~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 95 (224)
T TIGR03633 17 YQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSK-LVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINR 95 (224)
T ss_pred eHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCcc-ccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999854 5567888999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+++++++.+|.+ +|||++++||||+|+ ++|+||.+||.|++.+++++|+|+|+.+++++|++.
T Consensus 96 ~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~ 174 (224)
T TIGR03633 96 LTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKE 174 (224)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHh
Confidence 99999999999999999998764 479999999999996 799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCC
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDT 208 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~e 208 (236)
|+|+|+.+||++++++||+.+.+ |+.+++.++|++|+++|..++.++++|
T Consensus 175 ~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 175 YREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 99999999999999999999998 888999999999999997666788775
No 9
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-46 Score=309.17 Aligned_cols=186 Identities=26% Similarity=0.394 Sum_probs=179.0
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
+|+|||+++||||||+|+|.+++.++.+++.+|||+|++++++++||..+|++.+.+++|.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC---cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHH
Q 026587 96 NLVRLLSYNN---KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVV 172 (236)
Q Consensus 96 ~~i~~~~~~~---~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~ 172 (236)
+++++++|.+ +|||++++|+||||+++||+||++||+|++.+++++|+|+|+.+++++||+.|+|+||.+||++++.
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~ 161 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMK 161 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 9999988754 2599999999999976799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 173 KAVSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 173 ~~l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
+|++.+.+||+.++++++|++|+++|++.
T Consensus 162 ~a~~~~~~rd~~~~~~i~i~ii~~~g~~~ 190 (193)
T cd03758 162 KCIKELKKRFIINLPNFTVKVVDKDGIRD 190 (193)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCeEe
Confidence 99999999999999999999999999875
No 10
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-46 Score=307.01 Aligned_cols=185 Identities=29% Similarity=0.462 Sum_probs=179.5
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
+|+|||+++||||||+|++.+++.++.+++.+|||+|++|++++++|+.+|++.+.+++|.+++.|++.+|++++++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHH
Q 026587 96 NLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKA 174 (236)
Q Consensus 96 ~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~ 174 (236)
+++++++|.+| +||++++|+||||+ +||+||.+||+|++.+++++|+|+|+.+++++||+.|+|+||.+||++++.+|
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~ 159 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRA 159 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999986 58999999999996 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 175 VSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 175 l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
|+.+.+||..++++++|++|+++|.+.
T Consensus 160 l~~~~~rd~~sg~~~~v~ii~~~g~~~ 186 (188)
T cd03761 160 IYHATHRDAYSGGNVNLYHVREDGWRK 186 (188)
T ss_pred HHHHHHhcccCCCCeEEEEEcCCceEE
Confidence 999999999999999999999999974
No 11
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.1e-46 Score=303.93 Aligned_cols=186 Identities=61% Similarity=1.070 Sum_probs=181.0
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
+|+|||+++||||||+|++.++|.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++.+++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHHH
Q 026587 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAV 175 (236)
Q Consensus 96 ~~i~~~~~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~l 175 (236)
+++++++|.+|+||++++||||+|+++||+||.+||+|++.+++++++|+|+.+++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~al 160 (188)
T cd03762 81 SLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNAL 160 (188)
T ss_pred HHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999976789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 176 SLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 176 ~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
+.+.+||+.+++.++|++|+++|.+.
T Consensus 161 ~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 161 SLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred HHHHHhccccCCCEEEEEECCCCEEE
Confidence 99999999999999999999999975
No 12
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.1e-46 Score=306.13 Aligned_cols=188 Identities=27% Similarity=0.387 Sum_probs=179.1
Q ss_pred ccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHH-HHHHHhCCCCCHH
Q 026587 14 MGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLH-QHTIQLGQPATVK 92 (236)
Q Consensus 14 ~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 92 (236)
.|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+++++++++|+.+|++.+++++|.+++ .|++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999998888888899999999999999999999999999999999986 5778899999999
Q ss_pred HHHHHHHHHHHcCc---CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCC--CCCHHHH
Q 026587 93 VAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE--GMTKEEA 167 (236)
Q Consensus 93 ~la~~i~~~~~~~~---rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~s~~ea 167 (236)
.+|+++++.+|.++ |||++++|+||||++++|+||.+||+|++.+++++|+|+|+.+++++||+.|++ +||++||
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea 160 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEA 160 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHH
Confidence 99999999988753 799999999999976799999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 168 EQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 168 i~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
++++.+||+.+.+||..++++++|++|+++|++.
T Consensus 161 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~ 194 (197)
T cd03760 161 RALIEECMKVLYYRDARSINKYQIAVVTKEGVEI 194 (197)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEECCCCEEe
Confidence 9999999999999999999999999999999875
No 13
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=4.5e-46 Score=311.59 Aligned_cols=203 Identities=24% Similarity=0.357 Sum_probs=188.9
Q ss_pred ccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026587 14 MGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKV 93 (236)
Q Consensus 14 ~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (236)
+|+|+|||+++||||||+|++.++|.++.+++.+|||+|++|++++++|..+|++.+.+++|.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 59999999999999999999999988888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC----cCccceeeEEEEEeCC-CCcEEEEECCCC-ceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHH
Q 026587 94 AANLVRLLSYNN----KNFLQTGMIVGGWDKY-EGGKIYGVPLGG-TIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEA 167 (236)
Q Consensus 94 la~~i~~~~~~~----~rp~~vs~liaG~d~~-~g~~Ly~idp~G-~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 167 (236)
+|++|++++|.+ .|||++++||||||++ ++|+||++||+| ++..++++|+|+|+++++++||+.|+++||.+||
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea 160 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence 999999998764 5899999999999964 579999999999 5777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCc-------EEEEEEcCCCeEEEeecCCCCchhhhhccC
Q 026587 168 EQLVVKAVSLAIARDGASGGV-------VRTVTINSEGVSRKFYPGDTLPLWHEELEP 218 (236)
Q Consensus 168 i~l~~~~l~~~~~~d~~~~~~-------i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~ 218 (236)
++++++||..+.++|..+++. ++|++|+++|++ .++++||+++++.+..
T Consensus 161 i~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~--~l~~~ei~~~~~~~~~ 216 (219)
T TIGR03690 161 LRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGAR--RVPESELEELARAIVE 216 (219)
T ss_pred HHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceE--EcCHHHHHHHHHHHHh
Confidence 999999999999999866664 399999999966 4999999999987754
No 14
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.3e-45 Score=301.24 Aligned_cols=184 Identities=35% Similarity=0.574 Sum_probs=178.6
Q ss_pred cceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026587 15 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (236)
Q Consensus 15 gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (236)
|+|+|||+++||||||+|++.+++.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 79999999999999999999998988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHH
Q 026587 95 ANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVK 173 (236)
Q Consensus 95 a~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~ 173 (236)
++++++.+|.++ |||++++|+||+|+ +||+||.+||+|++.+++++++|+|+.+++++||+.|+++||++||++++++
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~ 159 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVR 159 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 999999999874 79999999999997 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEEEcCCCe
Q 026587 174 AVSLAIARDGASGGVVRTVTINSEGV 199 (236)
Q Consensus 174 ~l~~~~~~d~~~~~~i~i~ii~k~g~ 199 (236)
||+.+.+||..++++++|++|+++|+
T Consensus 160 ~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 160 AIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 99999999999999999999999985
No 15
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-46 Score=311.56 Aligned_cols=192 Identities=20% Similarity=0.278 Sum_probs=183.0
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.|||.+++++|+|+|||+++||||||+|++.+.+.++.+++.+|||+|++++++++||+.+|++.+.+++|.+++.|+
T Consensus 17 ~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 96 (213)
T cd03752 17 YQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYL 96 (213)
T ss_pred hHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999988767788999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+++|++++++.+++.|+..++.+ .|||++++|++|||++.||+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus 97 ~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~ 176 (213)
T cd03752 97 YSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQD 176 (213)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHh
Confidence 99999999999999999887654 4799999999999976799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 194 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii 194 (236)
|+|+||++||++++++||+.+.+||..++.+++|+++
T Consensus 177 y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 177 YKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 9999999999999999999999999888899999875
No 16
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.4e-45 Score=299.16 Aligned_cols=185 Identities=32% Similarity=0.557 Sum_probs=180.0
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
+|+|||+|+||||||+|+|.++|.++.+++.+|||+|+++++++++|..+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHHH
Q 026587 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAV 175 (236)
Q Consensus 96 ~~i~~~~~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~l 175 (236)
++|++.+|.++.||+|++|+||||+ +||+||.+||+|++.+++++|+|+|+.+++++|+++|+|+||++||++++++||
T Consensus 81 ~~l~~~l~~~~~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l 159 (189)
T cd03763 81 TMLKQHLFRYQGHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAI 159 (189)
T ss_pred HHHHHHHHHcCCccceeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 9999999998889999999999997 689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 176 SLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 176 ~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
+.+.+||+.++++++|++|+++|++.
T Consensus 160 ~~~~~rd~~~~~~~~v~ii~~~g~~~ 185 (189)
T cd03763 160 EAGIFNDLGSGSNVDLCVITKDGVEY 185 (189)
T ss_pred HHHHHhcCcCCCceEEEEEcCCcEEE
Confidence 99999999999999999999999985
No 17
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-46 Score=297.49 Aligned_cols=209 Identities=22% Similarity=0.343 Sum_probs=194.6
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
.|.+||.+|++-|+|.|||+.++|||||+++|+++.++. +.+.+||++|++||+|++||+.+|+++++++.|.+++.|+
T Consensus 22 fQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~-p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~ 100 (241)
T KOG0176|consen 22 FQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLME-PSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHW 100 (241)
T ss_pred eehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccC-chhhhhheehhhceeeeccccccchHHHHHHHHHHhhhce
Confidence 367999999999999999999999999999999998774 7888999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC----------cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHH
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN----------KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYG 152 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~----------~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~ 152 (236)
+.||++++++.+.+.++++.-++ +|||||++|+||+|. +||+||..||+|++++|++-|||+|+.-+.+
T Consensus 101 f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~ 179 (241)
T KOG0176|consen 101 FTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTFIRYKAKAIGSGSEGAES 179 (241)
T ss_pred eecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCceEEecceeccccchHHHH
Confidence 99999999999999999975432 489999999999996 8999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhh
Q 026587 153 FFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 215 (236)
Q Consensus 153 ~Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~ 215 (236)
.|++.|+++++++||+.+++..|+..++.. .+..|+++.+++++|..+ +++++|++.++.+
T Consensus 180 ~L~~e~~~~ltL~ea~~~~L~iLkqVMeeK-l~~~Nvev~~vt~e~~f~-~~t~EE~~~~i~~ 240 (241)
T KOG0176|consen 180 SLQEEYHKDLTLKEAEKIVLKILKQVMEEK-LNSNNVEVAVVTPEGEFH-IYTPEEVEQVIKR 240 (241)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHHh-cCccceEEEEEcccCceE-ecCHHHHHHHHhc
Confidence 999999999999999999999999999764 456899999999986654 5999999988764
No 18
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.4e-45 Score=307.22 Aligned_cols=205 Identities=19% Similarity=0.202 Sum_probs=186.5
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEec----CeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCC-CCC
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLT----DNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ-PAT 90 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~ 90 (236)
|.+|||+++||||||+|+|.+.++...+ +.+|||+|+ +|++|+.||+.+|++.+++++|.+++.|++++|+ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~-~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNIS-TYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCcccc-ccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 5689999999999999999988866544 689999998 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHc-----------CcCccceeeEEEEEeCCCCcEEEEECCCCceeee----CEEEEccChhhhHHHHH
Q 026587 91 VKVAANLVRLLSYN-----------NKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ----PFAIGGSGSSYLYGFFD 155 (236)
Q Consensus 91 ~~~la~~i~~~~~~-----------~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~----~~~aiG~g~~~~~~~Le 155 (236)
++.+|+++++.+++ ..|||+|++||||||++.||+||++||+|++.++ +|+|+|. +.+++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 99999999997654 1489999999999997679999999999999998 5789996 799999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEE-EeecCCCCchhhhhccCcccc
Q 026587 156 QAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR-KFYPGDTLPLWHEELEPQNSL 222 (236)
Q Consensus 156 ~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~-~~l~~~ei~~~l~~~~~~~~~ 222 (236)
++|+++||++||++++++||+.+.+||..++++|+|++|+|+|.+. ..-.-++=++++.++--.||+
T Consensus 159 k~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (236)
T cd03765 159 RVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIEEDDPYFAMIRKAWSE 226 (236)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEecCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 445566677788888877876
No 19
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.1e-46 Score=308.20 Aligned_cols=190 Identities=17% Similarity=0.188 Sum_probs=178.2
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.|||++++++|+|+|||+++||||||+|++.++.. ...++.+|||+|+++++++++|+.+|++.+++++|.+++.|+
T Consensus 18 ~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~ 96 (212)
T cd03751 18 FQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKL-YEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYR 96 (212)
T ss_pred hHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccc-cCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999998644 446678999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.+|++++++.++++|++.+|.+ +|||++++|+||+|+ +||+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus 97 ~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~ 175 (212)
T cd03751 97 DNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKL 175 (212)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHh
Confidence 99999999999999999987764 589999999999996 689999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 194 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii 194 (236)
|+++||++||+++++++|..+.+.+.....+|||.++
T Consensus 176 ~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 176 KFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999866677789998875
No 20
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-44 Score=296.58 Aligned_cols=185 Identities=34% Similarity=0.570 Sum_probs=178.9
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
+|+|||+++||||||+|++.++|.++.+++.+||++|+++++++++|..+|++.+.+++|.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHH
Q 026587 96 NLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKA 174 (236)
Q Consensus 96 ~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~ 174 (236)
+++++.+|.++ |||++++|+||+|+ ++|+||.+||+|++.+++++|+|+|+.+++++||+.|+++|+++||++++++|
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~ 159 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRA 159 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999874 79999999999997 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 175 VSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 175 l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
|+.+.+||..++++++|++|+++|++.
T Consensus 160 l~~~~~rd~~~~~~i~i~iv~~~g~~~ 186 (188)
T cd03764 160 IKSAIERDSASGDGIDVVVITKDGYKE 186 (188)
T ss_pred HHHHHhhcCCCCCcEEEEEECCCCeEe
Confidence 999999999999999999999999653
No 21
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-45 Score=305.96 Aligned_cols=188 Identities=22% Similarity=0.312 Sum_probs=176.8
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.|||++++++|+|+|||+++||||||+|++.+.. ++.+++.+||++|++|+++++||+.+|++.+.+++|.+++.|+
T Consensus 15 ~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 93 (207)
T cd03755 15 FQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAK-LQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHR 93 (207)
T ss_pred eHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCc-ccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999988765 4456678999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
++++++++++.+++.+++++|++ .|||++++|++|||++++|+||.+||+|++.+++++|+|+|+.+++++||++
T Consensus 94 ~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~ 173 (207)
T cd03755 94 LTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKN 173 (207)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhh
Confidence 99999999999999999998765 4799999999999986799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 194 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii 194 (236)
|+|+||.+||++++++||..+.+ .++.++||+++
T Consensus 174 ~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 174 YKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 99999999999999999999996 56789999875
No 22
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-44 Score=294.66 Aligned_cols=186 Identities=43% Similarity=0.617 Sum_probs=180.3
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
||+|||+++||||||+|++.+++..+.+++.+|||+|+++++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999887788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcC-ccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHH
Q 026587 96 NLVRLLSYNNKN-FLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKA 174 (236)
Q Consensus 96 ~~i~~~~~~~~r-p~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~ 174 (236)
+++++.+|.+++ ||++++|+||+|++++|+||.+||+|++.+++++|+|+++++++++||+.|+|+||++||++++.+|
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~ 160 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKA 160 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 999999999875 9999999999997679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 175 VSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 175 l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
|+.+.++|+.++++++|++|+++|.+.
T Consensus 161 l~~~~~~d~~~~~~~~v~vi~~~g~~~ 187 (189)
T cd01912 161 IDSAIERDLSSGGGVDVAVITKDGVEE 187 (189)
T ss_pred HHHHHHhcCccCCcEEEEEECCCCEEE
Confidence 999999999999999999999999875
No 23
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-45 Score=304.05 Aligned_cols=189 Identities=17% Similarity=0.246 Sum_probs=178.0
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.|||++++++|+|+|||+++||||||+|++.+.+. .++.+|||+|++++++++||+.+|++.+.+++|.+++.|+
T Consensus 15 ~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 91 (211)
T cd03749 15 FQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSEL---SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYR 91 (211)
T ss_pred eHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCcccc---CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999988763 3566999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
++++++++++.+|+.+++.+|.+ +|||+|++||+|||+ .||+||.+||+|++.+++++|+|+|++.++++||++
T Consensus 92 ~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~ 170 (211)
T cd03749 92 FVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERH 170 (211)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHh
Confidence 99999999999999999988753 579999999999997 689999999999999999999999999999999999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEc
Q 026587 158 WK--EGMTKEEAEQLVVKAVSLAIARDG-ASGGVVRTVTIN 195 (236)
Q Consensus 158 ~~--~~~s~~eai~l~~~~l~~~~~~d~-~~~~~i~i~ii~ 195 (236)
|+ ++||++|++++++++|+.+.++|. .++.+|||++|+
T Consensus 171 ~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 171 FEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred hccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 98 699999999999999999999887 888999999984
No 24
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-45 Score=303.85 Aligned_cols=190 Identities=25% Similarity=0.363 Sum_probs=179.9
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.+||++++++|+|+|||+++||||||+|++.+.+ ++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+
T Consensus 16 ~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~ 94 (211)
T cd03756 16 YQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSK-LVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHR 94 (211)
T ss_pred hHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCc-ccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999854 5567789999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
++++++++++.+++.+++.++.+ .|||++++||||+|+ ++|+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 95 ~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~ 173 (211)
T cd03756 95 LTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKE 173 (211)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhh
Confidence 99999999999999999988764 379999999999997 799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEc
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN 195 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~ 195 (236)
|+|+|+.+||++++++||..+.+++. ++.+++|++|+
T Consensus 174 ~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 174 YKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 99999999999999999999998776 88999999986
No 25
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=7.2e-45 Score=305.29 Aligned_cols=201 Identities=14% Similarity=0.226 Sum_probs=182.3
Q ss_pred ccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHH
Q 026587 5 MEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQ 84 (236)
Q Consensus 5 ~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 84 (236)
.+||++++++|+|+|||+++||||||+|++. ++.+|||+|++|++|+++|+.+|++.++++++.+++.|++.
T Consensus 17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~ 88 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYS 88 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhh
Confidence 5899999999999999999999999999962 35689999999999999999999999999999999999999
Q ss_pred hC-CCCCHHHHHHHHHHHHHc----CcCccceeeEEEEEeC-CCCcEEEEECCCCceeeeC-EEEEccChhhhHHHHHhh
Q 026587 85 LG-QPATVKVAANLVRLLSYN----NKNFLQTGMIVGGWDK-YEGGKIYGVPLGGTIIEQP-FAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 85 ~~-~~~~~~~la~~i~~~~~~----~~rp~~vs~liaG~d~-~~g~~Ly~idp~G~~~~~~-~~aiG~g~~~~~~~Le~~ 157 (236)
++ .+++++.+|+.+++.++. +.|||+|++|+||||+ +.||+||.+||+|++.+++ ++|+|+|++.++++||++
T Consensus 89 ~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~ 168 (228)
T TIGR03691 89 YDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKES 168 (228)
T ss_pred cCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHh
Confidence 98 689999999988887654 4699999999999985 4789999999999999976 899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH--hcCCCCCcEEEEEEcCCC--eEEEeecCCCCchhh
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIA--RDGASGGVVRTVTINSEG--VSRKFYPGDTLPLWH 213 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~--~d~~~~~~i~i~ii~k~g--~~~~~l~~~ei~~~l 213 (236)
|+++||.+||++++++||+.+.+ ++..++.++||++|++++ ..++.++++||+++|
T Consensus 169 y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 169 YRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 99999999999999999999964 556888999999999865 334579999998764
No 26
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.4e-45 Score=302.82 Aligned_cols=190 Identities=17% Similarity=0.186 Sum_probs=176.2
Q ss_pred ccccCCCCCccc-cceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSM-GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQH 81 (236)
Q Consensus 3 ~~~~~a~~~v~~-gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 81 (236)
+|.+||++|+++ |+|+|||+++||||||+|+|.+.+.+. .++.+|||+|++++++++||+.+|++.+.+++|.+++.|
T Consensus 16 ~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~-~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~ 94 (215)
T cd03754 16 YQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLID-PSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEF 94 (215)
T ss_pred eHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccC-CcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHH
Confidence 578999999985 889999999999999999999876543 457899999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHh
Q 026587 82 TIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQ 156 (236)
Q Consensus 82 ~~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~ 156 (236)
+++++++++++.+|+.+++++|.+ .|||++++|+||+|+++||+||.+||+|++.+++++|+|+|++.++++||+
T Consensus 95 ~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~ 174 (215)
T cd03754 95 KYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEK 174 (215)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHH
Confidence 999999999999999999986553 379999999999997679999999999999999999999999999999999
Q ss_pred hcCCC--C--CHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Q 026587 157 AWKEG--M--TKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 194 (236)
Q Consensus 157 ~~~~~--~--s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii 194 (236)
+|+++ | |.+||++++++||..+.+||.. +.++||+|+
T Consensus 175 ~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~-~~~~ei~~~ 215 (215)
T cd03754 175 KLKKKPDLIESYEETVELAISCLQTVLSTDFK-ATEIEVGVV 215 (215)
T ss_pred HhccccccCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEC
Confidence 99985 7 9999999999999999999864 799999875
No 27
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.3e-44 Score=300.88 Aligned_cols=190 Identities=21% Similarity=0.326 Sum_probs=180.3
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.|||++++++|+|+||++++|||+||+|++.+.+. +..++.+|||+|+++++++++|..+|++.+.++++..++.|+
T Consensus 15 ~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~ 93 (209)
T cd01911 15 FQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKL-LDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYR 93 (209)
T ss_pred eHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccc-cCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999764 456888999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+++|++++++.+|+++++.++++ .|||++++||||+|++++|+||.+||.|++.+++++++|+|+.+++++||+.
T Consensus 94 ~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~ 173 (209)
T cd01911 94 YTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKR 173 (209)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHh
Confidence 99999999999999999988654 4799999999999986699999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 194 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii 194 (236)
|+|+|+.+||++++++||+.+.++|. +++.++|+++
T Consensus 174 ~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 174 YKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 99999999999999999999999998 9999999875
No 28
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-44 Score=299.56 Aligned_cols=189 Identities=23% Similarity=0.341 Sum_probs=177.6
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.|||++++++|+|+|||+++||||||+|++.+++. ...++.+||++|+++++++++|+.+|++.+.+++|.+++.|+
T Consensus 15 ~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 93 (213)
T cd03753 15 FQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPL-MEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHR 93 (213)
T ss_pred hHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcC-cCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999998764 456778999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC----------cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHH
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN----------KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYG 152 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~----------~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~ 152 (236)
+.+|++++++.+++.+++.+|.+ .|||++++|+||||+ .||+||.+||+|++.+++++|+|++++++++
T Consensus 94 ~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~ 172 (213)
T cd03753 94 FTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEGAQS 172 (213)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecccEEEECCCcHHHHH
Confidence 99999999999999999988763 389999999999997 7999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Q 026587 153 FFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 194 (236)
Q Consensus 153 ~Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii 194 (236)
+|++.|+++||++||++++++||+.+.+++ .++.+++|++|
T Consensus 173 ~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 173 SLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 999999999999999999999999998754 67789999875
No 29
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=4e-42 Score=281.05 Aligned_cols=183 Identities=31% Similarity=0.438 Sum_probs=170.0
Q ss_pred ccccceEEEEEeCCEEEEeEeCccccCceeecCC-CCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 026587 12 HSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRA-SDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPAT 90 (236)
Q Consensus 12 v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (236)
+++|+|+|||+++||||||+|++.++|..+..++ .+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 4689999999999999999999999888776666 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc-----CcCccceeeEEEEEeCCCCcEEEEECCCCceeee-CEEEEccChhhhHHHHHhhcCCCCCH
Q 026587 91 VKVAANLVRLLSYN-----NKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTK 164 (236)
Q Consensus 91 ~~~la~~i~~~~~~-----~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s~ 164 (236)
++.+++.++..++. ++|||++++|+||+|++++|+||.+||+|++.++ +++|+|+|++.++++|++.|+++||+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 99666666655433 3689999999999998667999999999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Q 026587 165 EEAEQLVVKAVSLAIARDGASGGVVRTVTI 194 (236)
Q Consensus 165 ~eai~l~~~~l~~~~~~d~~~~~~i~i~ii 194 (236)
+||++++++||+.+.++|..++++++|++|
T Consensus 161 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 161 EEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999999999999999987
No 30
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-43 Score=281.93 Aligned_cols=220 Identities=19% Similarity=0.257 Sum_probs=205.3
Q ss_pred cccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHH
Q 026587 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (236)
Q Consensus 4 ~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (236)
|-+||++++.+.+|+|||.++||||||++++.++.++-.+...+||++|+|+|+|+++|+++|+..|++++|..+|.|.+
T Consensus 20 QVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~ 99 (249)
T KOG0178|consen 20 QVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLF 99 (249)
T ss_pred HHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999888888899999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhc
Q 026587 84 QLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (236)
Q Consensus 84 ~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~ 158 (236)
.||.++|++.|+..+++.-|.| .||||||+|.+|||+..|.+||+.||+|++..|++.++|.++..++..|...|
T Consensus 100 ~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdy 179 (249)
T KOG0178|consen 100 RYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDY 179 (249)
T ss_pred HhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhh
Confidence 9999999999999999998876 49999999999999977999999999999999999999999999999999999
Q ss_pred CCCC-CHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeE--EEeecCCCCchhhhhccCccccc
Q 026587 159 KEGM-TKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVS--RKFYPGDTLPLWHEELEPQNSLL 223 (236)
Q Consensus 159 ~~~~-s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~--~~~l~~~ei~~~l~~~~~~~~~~ 223 (236)
+.+. ++++|+.+|++.|..+.+.+.++...+||+.|+++..+ .+.+.++||.+++++.+......
T Consensus 180 kdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~~~~~~~~ 247 (249)
T KOG0178|consen 180 KDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKYHETQRQA 247 (249)
T ss_pred ccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHhhhhhhhc
Confidence 9775 49999999999999999999999999999999997544 36789999999999988665543
No 31
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=9e-42 Score=277.20 Aligned_cols=179 Identities=35% Similarity=0.510 Sum_probs=173.0
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
+|+|||+++||||||+|++.+++..+.+++.+|||+|+++++++++|..+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999887788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCc---CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHH
Q 026587 96 NLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVV 172 (236)
Q Consensus 96 ~~i~~~~~~~~---rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~ 172 (236)
+++++++|.++ |||++++|+||+|++++|+||.+||+|++.+++++|+|+|+.+++++||+.|+++||.+||+++++
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~ 160 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELAL 160 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 99999999986 899999999999976799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEEE
Q 026587 173 KAVSLAIARDGASGGVVRTVTI 194 (236)
Q Consensus 173 ~~l~~~~~~d~~~~~~i~i~ii 194 (236)
+||+.+.++|..++.+++|++|
T Consensus 161 ~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 161 KALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHcccCCCCCCEEEEEC
Confidence 9999999999989999999875
No 32
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=265.75 Aligned_cols=203 Identities=25% Similarity=0.311 Sum_probs=193.0
Q ss_pred ccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHH
Q 026587 5 MEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQ 84 (236)
Q Consensus 5 ~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 84 (236)
-+.+.+...+|+|+|||++.|++|+|+|+|.+.|..+.+++++|||+++|+++++.+|+.+|+..|.+.++...+.|+..
T Consensus 19 ~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~ 98 (235)
T KOG0179|consen 19 HERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHD 98 (235)
T ss_pred cccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcC----
Q 026587 85 LGQPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWK---- 159 (236)
Q Consensus 85 ~~~~~~~~~la~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~---- 159 (236)
+++.+++..+|+.|+..+|.+| +||.+..+++|+|+++++.+|++||.|++.+..+.|-|+++..++++|++..+
T Consensus 99 h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~ 178 (235)
T KOG0179|consen 99 HNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQ 178 (235)
T ss_pred ccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCc
Confidence 9999999999999999999988 59999999999999899999999999999999999999999999999997442
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCC
Q 026587 160 -------EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGD 207 (236)
Q Consensus 160 -------~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ 207 (236)
+.+|+++|+.++.++|..|.+||..+|+.++|+|++|+|+..+.++..
T Consensus 179 ~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~Lr 233 (235)
T KOG0179|consen 179 NLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLPLR 233 (235)
T ss_pred ccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeeecc
Confidence 458999999999999999999999999999999999999999887754
No 33
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-41 Score=268.24 Aligned_cols=209 Identities=16% Similarity=0.248 Sum_probs=194.9
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
.|++||..|+.+|.+.|||+-.||||||++++..+.+ +...+..|+++|.+||+|.+||+.+|.+.+++..|..++.|.
T Consensus 20 ~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L-~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy 98 (233)
T KOG0181|consen 20 VQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPL-VDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYY 98 (233)
T ss_pred ehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCcc-chhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHH
Confidence 3789999999999999999999999999999887664 456778999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCc-----CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~~-----rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
..|++++|+..+...++..+|+++ ||||++++|||||+ ++|.||++||+|+++.|+++|+|.+...++++||++
T Consensus 99 ~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR 177 (233)
T KOG0181|consen 99 RVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKR 177 (233)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhhhccCcchHHHHHHHH
Confidence 999999999999999999999984 89999999999998 799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhc
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEEL 216 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~ 216 (236)
|++++.+++++..++..|+...+. ..+.+++||+++..+++++ ++++||+.+|..+
T Consensus 178 ~~edleldd~ihtailtlkE~feg-e~~~~nieigv~~~~~F~~--lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 178 YNEDLELDDAIHTAILTLKESFEG-EMTAKNIEIGVCGENGFRR--LTPAEIEDYLASL 233 (233)
T ss_pred hccccccchHHHHHHHHHHHHhcc-ccccCceEEEEecCCceee--cCHHHHHHHHhcC
Confidence 999999999999999999999975 4567999999999777765 9999999998764
No 34
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=267.02 Aligned_cols=201 Identities=17% Similarity=0.193 Sum_probs=185.9
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
.|.+||+||+.+|+||||||||||||+++++.+++.+++ .....|||.|++||+|+++|+.+|++.+.+++|.++..|+
T Consensus 22 fQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~-p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~ 100 (254)
T KOG0184|consen 22 FQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYE-PGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWR 100 (254)
T ss_pred ehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccc-cCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999876 4556999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCc-----CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~~-----rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
.+|+.++|...+++++.+++|.++ ||||++.++++||. +||+||.++|+|..+.++++|+|.|.+.+++.||+.
T Consensus 101 ~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL 179 (254)
T KOG0184|consen 101 KNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKL 179 (254)
T ss_pred HhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHHHhc
Confidence 999999999999999999988764 89999999999996 899999999999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCC--CeEEEeecC
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE--GVSRKFYPG 206 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~--g~~~~~l~~ 206 (236)
--.+|+.+|+++.+-+.+..+.+........+|+.|+..+ |.+ +.+|.
T Consensus 180 ~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h-~~vp~ 229 (254)
T KOG0184|consen 180 KIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLH-EKVPS 229 (254)
T ss_pred ccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCcc-ccCcH
Confidence 8789999999999999999999877777788999999873 555 34554
No 35
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-41 Score=267.50 Aligned_cols=212 Identities=21% Similarity=0.322 Sum_probs=195.8
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|-+||++|+.+|+|+||++++|+|||..+++....+. ..+...||..+++|++++++|+.+|++-+++++|.+|+.|+
T Consensus 18 ~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq-~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShr 96 (249)
T KOG0183|consen 18 FQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQ-DERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHR 96 (249)
T ss_pred EeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhh-hhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhh
Confidence 57899999999999999999999999999998876655 45668999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+..+.+++++.++.+|+.+.|.| +||||+|.||+|+|+++.|+||++||+|.|.+|.+.|||.+++.++.+||++
T Consensus 97 lt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~ 176 (249)
T KOG0183|consen 97 LTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKN 176 (249)
T ss_pred cccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHh
Confidence 99999999999999999998886 5899999999999998889999999999999999999999999999999999
Q ss_pred cCCC--CCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCc
Q 026587 158 WKEG--MTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQ 219 (236)
Q Consensus 158 ~~~~--~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~ 219 (236)
|++. .+..+++++++++|......+ +.+++++++++++-. +.+..++|+.+...++..
T Consensus 177 y~e~~~~~~~~~ikL~ir~LleVvqs~---~~nie~aVm~~~~~~-~~l~~~~I~~~v~~ie~E 236 (249)
T KOG0183|consen 177 YKEEAIATEGETIKLAIRALLEVVQSG---GKNIEVAVMKRRKDL-KMLESEEIDDIVKEIEQE 236 (249)
T ss_pred cccccccccccHHHHHHHHHHHHhhcC---CCeeEEEEEecCCce-eecCHHHHHHHHHHHHHH
Confidence 9866 788999999999999998643 479999999998743 459999999999998855
No 36
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-39 Score=254.28 Aligned_cols=209 Identities=57% Similarity=0.976 Sum_probs=201.8
Q ss_pred CCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCC
Q 026587 9 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQP 88 (236)
Q Consensus 9 ~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (236)
+..+..|||++|++++|||||++|+|.+.|..+.++-.+|+-+|.|+|+||-||..+|.|.+.+.++..+..|..+++.+
T Consensus 13 ~~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~ 92 (224)
T KOG0174|consen 13 KEEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKP 92 (224)
T ss_pred ccccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCC
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCcCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHH
Q 026587 89 ATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAE 168 (236)
Q Consensus 89 ~~~~~la~~i~~~~~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai 168 (236)
+++...|+.++++.|+++..+.+++|+||||+..|.++|.+--.|+..+.+++.-|+||.+++++++..|+|+||+||++
T Consensus 93 p~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~ 172 (224)
T KOG0174|consen 93 PLVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECV 172 (224)
T ss_pred chHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHH
Confidence 99999999999999999988999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhcc
Q 026587 169 QLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELE 217 (236)
Q Consensus 169 ~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~ 217 (236)
.+..+|+..++.||-.+|+.|.+.+|+++|+.+++++++++.++..+.+
T Consensus 173 ~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~v~t~ 221 (224)
T KOG0174|consen 173 RFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFAVETP 221 (224)
T ss_pred HHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCccccccccCC
Confidence 9999999999999999999999999999999999999999988866544
No 37
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-39 Score=262.03 Aligned_cols=211 Identities=18% Similarity=0.238 Sum_probs=194.1
Q ss_pred cccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHH
Q 026587 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (236)
Q Consensus 4 ~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (236)
|-+||++++++|++.||+|.++..||+|-++..+. +++.++|||+|++|+++.++|+++|++.|.+++|.+|..+++
T Consensus 21 QvEya~EavkqGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~ 97 (264)
T KOG0863|consen 21 QVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRF 97 (264)
T ss_pred HHHHHHHHHhcccceEeecccceEEEeeeccchhH---HHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhh
Confidence 56899999999999999999999999999888765 367889999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhc
Q 026587 84 QLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (236)
Q Consensus 84 ~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~ 158 (236)
.+++++++..+...+.+..|.. ||||||.++++|||+ .||+||.++|+|++.++++++||+.|+.++++||++.
T Consensus 98 ~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~ 176 (264)
T KOG0863|consen 98 IYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNL 176 (264)
T ss_pred ccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccEEEEeeeecccchhhHHHHHHHHH
Confidence 9999999999999999887763 699999999999998 8999999999999999999999999999999999987
Q ss_pred C--CCCCHHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCc
Q 026587 159 K--EGMTKEEAEQLVVKAVSLAIARD-GASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQ 219 (236)
Q Consensus 159 ~--~~~s~~eai~l~~~~l~~~~~~d-~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~ 219 (236)
. ++++.+|.|+.++.||+.+...| .+++.+++|+|+.||..+. +++.+++.+++.-.+..
T Consensus 177 e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~-~~d~~~~~k~~~~~~~~ 239 (264)
T KOG0863|consen 177 EEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFT-ILDQKDVAKYVDLFKKV 239 (264)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceE-eecHHHHHHHHHHhhcC
Confidence 6 79999999999999999999866 6788999999999998875 68888888776655533
No 38
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-38 Score=245.68 Aligned_cols=186 Identities=24% Similarity=0.372 Sum_probs=180.1
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
-+++||++.|+|++|+|+....+.++.+++.+|++++++++.|+++|..+|+-++.+++++.++.|+.++|.+++|+..|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC---cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHH
Q 026587 96 NLVRLLSYNN---KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVV 172 (236)
Q Consensus 96 ~~i~~~~~~~---~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~ 172 (236)
+++++.+.++ |+||.|++|+||+|++.||.||.+|..|+..+.++++.|.++.++.++|+++|+|+||.+||+++..
T Consensus 82 hFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmk 161 (200)
T KOG0177|consen 82 HFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMK 161 (200)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHH
Confidence 9999998875 5799999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 173 KAVSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 173 ~~l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
+|+..+.+|-...-.++.+.+|+|||.+.
T Consensus 162 KCv~El~kRlvin~~~f~v~IVdkdGir~ 190 (200)
T KOG0177|consen 162 KCVLELKKRLVINLPGFIVKIVDKDGIRK 190 (200)
T ss_pred HHHHHHHHhcccCCCCcEEEEEcCCCcee
Confidence 99999999998888899999999999985
No 39
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=248.86 Aligned_cols=215 Identities=13% Similarity=0.149 Sum_probs=202.0
Q ss_pred ccccCCCCCccc-cceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSM-GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQH 81 (236)
Q Consensus 3 ~~~~~a~~~v~~-gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 81 (236)
+|.+||-+|+++ |-|.||++++|++|+++.++++..++ .++....+|+|.++|+|+++|..+|.+..++++|.++.++
T Consensus 23 yQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLl-d~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~ 101 (246)
T KOG0182|consen 23 YQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLL-DSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEF 101 (246)
T ss_pred EeeehHHHHhhcCCCceEEEcCCceEEEEecccCccccc-ccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhh
Confidence 578999999999 99999999999999999999998765 4677899999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHh
Q 026587 82 TIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQ 156 (236)
Q Consensus 82 ~~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~ 156 (236)
+++||.++|++.||++++++.|.+ .||+||.+++.|+|++.||.+|.+||.|-+..+++++.|.....+.++||+
T Consensus 102 ~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEK 181 (246)
T KOG0182|consen 102 RYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEK 181 (246)
T ss_pred hhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHH
Confidence 999999999999999999998875 599999999999999889999999999999999999999999999999999
Q ss_pred hcCCC--CCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCc
Q 026587 157 AWKEG--MTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQ 219 (236)
Q Consensus 157 ~~~~~--~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~ 219 (236)
+|+++ .|.++++++++.||..+...|..+ ..+||.+++++...++.|+.+||++.|..|.++
T Consensus 182 k~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~-se~EVgvv~~~~p~f~~Ls~~eie~hL~~IAEk 245 (246)
T KOG0182|consen 182 KYKKDIDLTFEETVETAISALQSSLGIDFKS-SELEVGVVTVDNPEFRILSAEEIEEHLQAIAEK 245 (246)
T ss_pred hhccCccchHHHHHHHHHHHHHHHHhcccCC-cceEEEEEEcCCcceeeccHHHHHHHHHHhhhc
Confidence 99987 679999999999999999888754 789999999999888889999999999998765
No 40
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-37 Score=253.72 Aligned_cols=195 Identities=32% Similarity=0.535 Sum_probs=188.6
Q ss_pred cCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHh
Q 026587 6 EDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQL 85 (236)
Q Consensus 6 ~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 85 (236)
+.+.++++.|||++|+.++||||+++|+|.+.|.++...+.+||+.+.++|+|+.+|.++|...+.+.+.++++.++++.
T Consensus 28 ~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t 107 (271)
T KOG0173|consen 28 LKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNT 107 (271)
T ss_pred CCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhcc
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCcCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHH
Q 026587 86 GQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKE 165 (236)
Q Consensus 86 ~~~~~~~~la~~i~~~~~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ 165 (236)
++++++-..-+.+++.+..|+...++.+|+||+|. .|||||++-|.|+....+|.++|+|+..++++||..|+|||+.|
T Consensus 108 ~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~e 186 (271)
T KOG0173|consen 108 GRKPRVVTALRMLKQHLFRYQGHIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKE 186 (271)
T ss_pred CCCCceeeHHHHHHHHHHHhcCcccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHH
Confidence 99999988888999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 166 EAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 166 eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
||++|+.+|+.+.+..|..+|+++++|+|++.+..+
T Consensus 187 ea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~ 222 (271)
T KOG0173|consen 187 EAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY 222 (271)
T ss_pred HHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence 999999999999999999999999999999888775
No 41
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-36 Score=232.29 Aligned_cols=194 Identities=22% Similarity=0.301 Sum_probs=185.2
Q ss_pred ccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026587 12 HSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATV 91 (236)
Q Consensus 12 v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (236)
..+|+++||+++|+||.||+|.|.....+..+.+++|||+++|++++|.+|+..|++++.++++...+.|++++++.+.|
T Consensus 5 synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P 84 (204)
T KOG0180|consen 5 SYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKP 84 (204)
T ss_pred eecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCc
Confidence 35799999999999999999999988888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcC-ccceeeEEEEEeCCCCcEEEEECCCCcee-eeCEEEEccChhhhHHHHHhhcCCCCCHHHHHH
Q 026587 92 KVAANLVRLLSYNNKN-FLQTGMIVGGWDKYEGGKIYGVPLGGTII-EQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQ 169 (236)
Q Consensus 92 ~~la~~i~~~~~~~~r-p~~vs~liaG~d~~~g~~Ly~idp~G~~~-~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~ 169 (236)
+.+++.+|.++|++|+ ||.+..++||+|++++|++..+|.-|... ..+|++.|.++..+++..|..|+|+|..++..+
T Consensus 85 ~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFe 164 (204)
T KOG0180|consen 85 ETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFE 164 (204)
T ss_pred HHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999999999985 99999999999998899999999999887 479999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeec
Q 026587 170 LVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYP 205 (236)
Q Consensus 170 l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~ 205 (236)
.+.++|..+.+||+.+|+...+++|+||.+..|.++
T Consensus 165 tisQa~Lna~DRDalSGwGa~vyiI~kdkv~~r~lK 200 (204)
T KOG0180|consen 165 TISQALLNAVDRDALSGWGAVVYIITKDKVTKRTLK 200 (204)
T ss_pred HHHHHHHhHhhhhhhccCCeEEEEEccchhhhhhhh
Confidence 999999999999999999999999999998876554
No 42
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-36 Score=244.38 Aligned_cols=201 Identities=29% Similarity=0.478 Sum_probs=193.3
Q ss_pred ccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026587 12 HSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATV 91 (236)
Q Consensus 12 v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (236)
..||||++|++++.||++|+|+|.+.|..+.+...+||.+|+++.+-+++|-++|++..-+.+..+|..|++++++.|++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcC-ccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHH
Q 026587 92 KVAANLVRLLSYNNKN-FLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQL 170 (236)
Q Consensus 92 ~~la~~i~~~~~~~~r-p~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l 170 (236)
...+++|++++++|+. -+.+..+|+|||+ .||.||.+|..|+-...+-.++|+|+.+|+++|+..|++|||.+||.+|
T Consensus 148 saASKllsN~~y~YkGmGLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L 226 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGMGLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDL 226 (285)
T ss_pred HHHHHHHHHHHhhccCcchhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHH
Confidence 9999999999999975 4888999999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhh
Q 026587 171 VVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 215 (236)
Q Consensus 171 ~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~ 215 (236)
+++++..|..||.++|+.+.++.|+.+|..+ ++..++.+++.+
T Consensus 227 ~rrAI~hAThRDaySGG~vnlyHv~edGW~~--v~~~Dv~~L~~~ 269 (285)
T KOG0175|consen 227 ARRAIYHATHRDAYSGGVVNLYHVKEDGWVK--VSNTDVSELHYH 269 (285)
T ss_pred HHHHHHHHHhcccccCceEEEEEECCcccee--cCCccHHHHHHH
Confidence 9999999999999999999999999999997 899999888433
No 43
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-35 Score=240.01 Aligned_cols=214 Identities=24% Similarity=0.346 Sum_probs=197.4
Q ss_pred cCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHH-HHHH
Q 026587 6 EDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQ-HTIQ 84 (236)
Q Consensus 6 ~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~ 84 (236)
+..+.++.+||++||++++|||+||+|+..++|.+-...+.+|+|+|+|++++|++|..+|+|.+.+.+.....+ ..+.
T Consensus 32 qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~ 111 (256)
T KOG0185|consen 32 QRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLD 111 (256)
T ss_pred ccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccc
Confidence 345667789999999999999999999999999999999999999999999999999999999999999986655 3366
Q ss_pred hCCCCCHHHHHHHHHHHHHcCc---CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcC--
Q 026587 85 LGQPATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWK-- 159 (236)
Q Consensus 85 ~~~~~~~~~la~~i~~~~~~~~---rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~-- 159 (236)
.|..+.|+.++++|.+.+|.+| .|+..++++||+|..+.|+|..+|-.|..++.+..|+|.|...+.++|++.|.
T Consensus 112 Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k 191 (256)
T KOG0185|consen 112 DGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKK 191 (256)
T ss_pred cccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhcc
Confidence 6789999999999999999876 59999999999998778999999999999999999999999999999999997
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCccc
Q 026587 160 -EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQNS 221 (236)
Q Consensus 160 -~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~~ 221 (236)
++++.+||.+++.+||+....||+.+.+.++|++|+++|+.+ -+|..|+..|+..+..+.
T Consensus 192 ~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i--~~p~qv~~~W~fa~~~~g 252 (256)
T KOG0185|consen 192 GEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTI--SKPYQVKTNWDFAETIKG 252 (256)
T ss_pred chhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEe--cCceeeeecchhhhhccc
Confidence 679999999999999999999999988999999999999997 588889999998876543
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=9.8e-34 Score=227.69 Aligned_cols=166 Identities=24% Similarity=0.269 Sum_probs=148.9
Q ss_pred cceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEe-cCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026587 15 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQL-TDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKV 93 (236)
Q Consensus 15 gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (236)
|||+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|+.||..+|+|.+.++++.+++.|+. + . ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~--~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--N--L-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--c-HHH
Confidence 79999999999999999999999999999999999999 9999999999999999999999999999883 2 1 466
Q ss_pred HHHHHHHHH-HcCcCccceeeEEEEEeCCCCcEEEEECCCCceeee--CEEEEccChhhhHHHHHhhcC-CCCCHHHHHH
Q 026587 94 AANLVRLLS-YNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ--PFAIGGSGSSYLYGFFDQAWK-EGMTKEEAEQ 169 (236)
Q Consensus 94 la~~i~~~~-~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~--~~~aiG~g~~~~~~~Le~~~~-~~~s~~eai~ 169 (236)
.|+.++.+. +.+++|+.+++|++ |. |+||.+||.|+..+. ++.++|+|+.+++++|+++|+ |+| ||++
T Consensus 76 ~a~l~~~l~~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~ 147 (172)
T PRK05456 76 AVELAKDWRTDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEE 147 (172)
T ss_pred HHHHHHHHHhccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHH
Confidence 676665542 34457888999993 44 699999999999766 899999999999999999999 999 9999
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEE
Q 026587 170 LVVKAVSLAIARDGASGGVVRTVT 193 (236)
Q Consensus 170 l~~~~l~~~~~~d~~~~~~i~i~i 193 (236)
++++|++.+.+||..++++++|-.
T Consensus 148 la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 148 IAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999999999999999999988764
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=6.5e-33 Score=221.60 Aligned_cols=164 Identities=25% Similarity=0.232 Sum_probs=143.9
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecC-eEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTD-NVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (236)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++ +++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999998 999999999999999999999999999988764 44
Q ss_pred HHHHHHHH-HcCcCccc-eeeEEEEEeCCCCcEEEEECCCCceeee--CEEEEccChhhhHHHHHhhcCCC-CCHHHHHH
Q 026587 95 ANLVRLLS-YNNKNFLQ-TGMIVGGWDKYEGGKIYGVPLGGTIIEQ--PFAIGGSGSSYLYGFFDQAWKEG-MTKEEAEQ 169 (236)
Q Consensus 95 a~~i~~~~-~~~~rp~~-vs~liaG~d~~~g~~Ly~idp~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~-~s~~eai~ 169 (236)
++.++.+. +++ +|+. +.++++ |. ++||.+||.|...+. ++.++|+|+.+++++||..|+++ || +.+
T Consensus 76 a~l~~~l~~~~~-~~~l~a~~iv~--~~---~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~ 146 (171)
T cd01913 76 VELAKDWRTDRY-LRRLEAMLIVA--DK---EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEE 146 (171)
T ss_pred HHHHHHHHhccC-cCceEEEEEEe--CC---CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHH
Confidence 55555553 333 4544 555554 32 499999999999998 49999999999999999999995 99 559
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEE
Q 026587 170 LVVKAVSLAIARDGASGGVVRTVT 193 (236)
Q Consensus 170 l~~~~l~~~~~~d~~~~~~i~i~i 193 (236)
++.+|++.+.+||..+|++|++-.
T Consensus 147 la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 147 IARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHHHHHhhCcccCCCEEEEe
Confidence 999999999999999999998754
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=2.5e-32 Score=218.24 Aligned_cols=165 Identities=24% Similarity=0.258 Sum_probs=143.9
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEe-cCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQL-TDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (236)
||+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|+++|..+|++.|.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999987643 4667
Q ss_pred HHHHHHH-HHcCcCccceeeEEEEEeCCCCcEEEEECCCCceeee--CEEEEccChhhhHHHHHhhc-CCCCCHHHHHHH
Q 026587 95 ANLVRLL-SYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ--PFAIGGSGSSYLYGFFDQAW-KEGMTKEEAEQL 170 (236)
Q Consensus 95 a~~i~~~-~~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~--~~~aiG~g~~~~~~~Le~~~-~~~~s~~eai~l 170 (236)
++.++++ .+.+++.+.+.++++ |. ++||.+||.|...++ +++++|+|+.+++++||..| +++|+ |+++
T Consensus 76 a~l~~~~~~~~~~~~l~a~~iv~--~~---~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~l 147 (171)
T TIGR03692 76 VELAKDWRTDRYLRRLEAMLIVA--DK---ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEI 147 (171)
T ss_pred HHHHHHHhhcccccccEEEEEEE--cC---CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHH
Confidence 7777764 233333344666664 33 499999999999996 69999999999999999999 57778 9999
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEE
Q 026587 171 VVKAVSLAIARDGASGGVVRTVT 193 (236)
Q Consensus 171 ~~~~l~~~~~~d~~~~~~i~i~i 193 (236)
+.++++.+.+||..+|++|+|-.
T Consensus 148 a~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 148 AREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999999998764
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=1.4e-29 Score=199.96 Aligned_cols=160 Identities=32% Similarity=0.409 Sum_probs=153.9
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
+|+||++++||+++|+|++.+.+......+..|+++++++++++++|..+|++.+.++++++++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999999877677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCc--CccceeeEEEEEeCCCCcEEEEECCCCceeee-CEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHH
Q 026587 96 NLVRLLSYNNK--NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVV 172 (236)
Q Consensus 96 ~~i~~~~~~~~--rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~ 172 (236)
+.+++.++.++ +|+++++|+||+|+ ++|+||.+||+|++.+. +++++|.++..+.++|++.|+++++.+++++++.
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELAL 159 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999875 89999999999998 89999999999999999 9999999999999999999999999999999999
Q ss_pred HHHH
Q 026587 173 KAVS 176 (236)
Q Consensus 173 ~~l~ 176 (236)
+||+
T Consensus 160 ~~l~ 163 (164)
T cd01901 160 KALK 163 (164)
T ss_pred HHHh
Confidence 9986
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-16 Score=123.83 Aligned_cols=169 Identities=22% Similarity=0.197 Sum_probs=134.6
Q ss_pred cccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecC-eEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026587 13 SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTD-NVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATV 91 (236)
Q Consensus 13 ~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (236)
-++||||+++.++-++||+|.++|.|.++.+.+..|+.+|.+ .++.|++|.++|+.+|.+++..+++.|.-+ .
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~------L 75 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD------L 75 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc------H
Confidence 378999999999999999999999999999999999988864 799999999999999999999999988522 1
Q ss_pred HHHHHHHHHHHHcC--cCccceeeEEEEEeCCCCcEEEEECCCCceee--eCEEEEccChhhhHHHHHhhcC-CCCCHHH
Q 026587 92 KVAANLVRLLSYNN--KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIE--QPFAIGGSGSSYLYGFFDQAWK-EGMTKEE 166 (236)
Q Consensus 92 ~~la~~i~~~~~~~--~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~--~~~~aiG~g~~~~~~~Le~~~~-~~~s~~e 166 (236)
...+..+++-++.. .|.+.+-++++ |+ -.+|.+...|-..+ .+..|||||..++.+.....+. +++|
T Consensus 76 ~raavelaKdwr~Dk~lr~LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls--- 147 (178)
T COG5405 76 FRAAVELAKDWRTDKYLRKLEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS--- 147 (178)
T ss_pred HHHHHHHHHhhhhhhHHHHHhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---
Confidence 11233333333322 24466767775 44 46888888887664 4599999999999999888775 4666
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEEc
Q 026587 167 AEQLVVKAVSLAIARDGASGGVVRTVTIN 195 (236)
Q Consensus 167 ai~l~~~~l~~~~~~d~~~~~~i~i~ii~ 195 (236)
|.+++.++|+.+.+.+.++++++.|-.+.
T Consensus 148 A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 148 AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 77888999999998888888888887664
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.3e-15 Score=120.63 Aligned_cols=217 Identities=19% Similarity=0.211 Sum_probs=169.0
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEe---cCe-EEEEecCChHHHHHHHHHHHHHHHHHHHHh-CCCCC
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQL---TDN-VYLCRSGSAADSQTVSDYVRYFLHQHTIQL-GQPAT 90 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i---~~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~-~~~~~ 90 (236)
|.|||++...|.|+++|+|.+.|.-- .....|+|.. +++ ++++.+|..+-.|.+++.+.+..+.-+-.. -.-.+
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~-istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDY-ISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCchH-HHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchh
Confidence 68999999999999999999888432 2344666555 344 677889999999999999988775321111 11223
Q ss_pred HHHHHHHHHHHH---HcCcC--------ccceeeEEEEEeCCCCcEEEEECCCCceee----eCEEEEccChhhhHHHHH
Q 026587 91 VKVAANLVRLLS---YNNKN--------FLQTGMIVGGWDKYEGGKIYGVPLGGTIIE----QPFAIGGSGSSYLYGFFD 155 (236)
Q Consensus 91 ~~~la~~i~~~~---~~~~r--------p~~vs~liaG~d~~~g~~Ly~idp~G~~~~----~~~~aiG~g~~~~~~~Le 155 (236)
.-..+..+.... +.+.+ -|.|++|+||.-.-+-|.||.+.|.|++.+ .+|.-||. ..+.+++|+
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPild 159 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILD 159 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhh
Confidence 334444444432 22222 388999999976633589999999999986 57999997 567899999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEE-EeecCCCCchhhhhccCcccc-cccc--ccCCC
Q 026587 156 QAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR-KFYPGDTLPLWHEELEPQNSL-LDMM--NVASP 231 (236)
Q Consensus 156 ~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~-~~l~~~ei~~~l~~~~~~~~~-~~~~--~~~~~ 231 (236)
+.+.-+++++|+.++++-++......+...|-++++.++.+|.... +.+.-.|=++|+..|...|+- |+.. -+|.|
T Consensus 160 R~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~~~~ri~edd~Y~a~ir~~W~~~lrq~f~~lpd~ 239 (255)
T COG3484 160 RTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVRHTLRIREDDPYFAKIRSLWSSYLRQAFESLPDP 239 (255)
T ss_pred hhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeeeeeeEeccCChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999997765 446677889999999999988 5544 88999
Q ss_pred CCC
Q 026587 232 EPM 234 (236)
Q Consensus 232 ~~~ 234 (236)
+|-
T Consensus 240 ~~~ 242 (255)
T COG3484 240 PWE 242 (255)
T ss_pred ccc
Confidence 884
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=97.02 E-value=0.1 Score=42.37 Aligned_cols=150 Identities=14% Similarity=0.199 Sum_probs=89.3
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
+.+||..+++|.|||+|+|. +++-|.-.....|-+. +..|+--+-+.|.
T Consensus 2 SLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEee---------LYsG~IktdeEL~ 50 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEE---------LYSGKIKTDEELL 50 (194)
T ss_pred eEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHH---------HhCCccCCHHHHH
Confidence 57899999999999999864 2355655555444443 2345545666676
Q ss_pred HHHHHHH---Hc--Cc---CccceeeEEEEEeCC-----CCcEEEEEC-------CCCceeee-------CEEEEccC--
Q 026587 96 NLVRLLS---YN--NK---NFLQTGMIVGGWDKY-----EGGKIYGVP-------LGGTIIEQ-------PFAIGGSG-- 146 (236)
Q Consensus 96 ~~i~~~~---~~--~~---rp~~vs~liaG~d~~-----~g~~Ly~id-------p~G~~~~~-------~~~aiG~g-- 146 (236)
+....+- +- .+ +-.+- +++|-+-.. ..-++|.+- -.|.-... +..+.|..
T Consensus 51 kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk~~ 129 (194)
T PF09894_consen 51 KKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNKFT 129 (194)
T ss_pred HHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCHHH
Confidence 6655431 11 11 12222 333333221 123455443 22211110 12333311
Q ss_pred hhhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCC
Q 026587 147 SSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE 197 (236)
Q Consensus 147 ~~~~~~~Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~ 197 (236)
.+.+...|.++|+|.|+++++..+..++|+.+...-+..+..+++...++.
T Consensus 130 K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 130 KEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 245666788899999999999999999999998777767778887776653
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.52 E-value=1.2 Score=37.56 Aligned_cols=151 Identities=15% Similarity=0.221 Sum_probs=89.7
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
|.+|+..+++|.|+|.|+|. +++-|.-.|...|-+. +..|.-.|-+.|+
T Consensus 2 tLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEek---------LYsGeIkteEEL~ 50 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEK---------LYSGEIKTEEELA 50 (293)
T ss_pred eEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHH---------hhcCccccHHHHH
Confidence 56899999999999999864 2244555565555443 3355556777777
Q ss_pred HHHHHHHHcC--------cCccceeeEEEEEeCCC-----CcEEEEEC-------CCCceee-------eCEEEEcc--C
Q 026587 96 NLVRLLSYNN--------KNFLQTGMIVGGWDKYE-----GGKIYGVP-------LGGTIIE-------QPFAIGGS--G 146 (236)
Q Consensus 96 ~~i~~~~~~~--------~rp~~vs~liaG~d~~~-----g~~Ly~id-------p~G~~~~-------~~~~aiG~--g 146 (236)
.+..++--.. .|-..-++++|-+..-+ .-++|.+- -.|+-.- ..+.+.|. -
T Consensus 51 r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~ 130 (293)
T COG4079 51 RKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFT 130 (293)
T ss_pred HHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHH
Confidence 7666542211 12232334444333210 12344322 1111110 12333331 1
Q ss_pred hhhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCC
Q 026587 147 SSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE 197 (236)
Q Consensus 147 ~~~~~~~Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~ 197 (236)
.+.+..+|.+.|.+.++++++..+..++|..+...-+..+...++..+++.
T Consensus 131 Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 131 KEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 234455678899999999999999999999998666667778888888764
No 52
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=86.69 E-value=1 Score=34.43 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=39.4
Q ss_pred EEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHH
Q 026587 127 YGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQ 169 (236)
Q Consensus 127 y~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~ 169 (236)
..+|-+|.+.+.+|-..|.||..+.+-+-..|-..+|++|+.+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~k 113 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALK 113 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHh
Confidence 3678899999999999999999999999999999999999874
No 53
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=66.52 E-value=10 Score=29.48 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 159 KEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 159 ~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
.+.+|+++|.+++..++..+.+. +.++.+.+++.+|-..
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~~ 43 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGHLV 43 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCCEE
Confidence 46799999999999999998863 6899999999998765
No 54
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=63.54 E-value=15 Score=32.17 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEE---eecCCCCchhhhhccCccccccccccCC
Q 026587 160 EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRK---FYPGDTLPLWHEELEPQNSLLDMMNVAS 230 (236)
Q Consensus 160 ~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~---~l~~~ei~~~l~~~~~~~~~~~~~~~~~ 230 (236)
..+|.+++..++...|.....+.....+....++..+++-++| ++...-..-.++.|+.+.|+++.|+||.
T Consensus 44 ~pLt~eq~~~i~~~iM~~~q~~eF~~~~EcNfai~~~~~gRfRvnAf~qr~~~g~VlRrI~~~IPt~eeL~LPe 117 (375)
T COG5008 44 EPLTGEQTMAIAFSIMSAKQREEFEETHECNFAISARDIGRFRVNAFYQRGLAGLVLRRIETKIPTFEELKLPE 117 (375)
T ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHhcccceEEEEcCCCceEEeehhhhcCcchhhhhhhhccCCcHHhcCCcH
Confidence 4689999999999999998887765556777788777766653 3456668888999999999999999984
No 55
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=49.49 E-value=12 Score=23.14 Aligned_cols=33 Identities=21% Similarity=0.106 Sum_probs=24.5
Q ss_pred EEccChhhhHHHHHhhc-CCCCCHHHHHHHHHHH
Q 026587 142 IGGSGSSYLYGFFDQAW-KEGMTKEEAEQLVVKA 174 (236)
Q Consensus 142 aiG~g~~~~~~~Le~~~-~~~~s~~eai~l~~~~ 174 (236)
+.|.....+..++.+.. .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 35778888888888876 8899999988877653
No 56
>PRK09732 hypothetical protein; Provisional
Probab=49.07 E-value=53 Score=25.25 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 160 EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 160 ~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
+.||++.|.+++..++..+.+. +.++.|++++..|.-.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~ 42 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLL 42 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEE
Confidence 4689999999999999999974 4689999999998865
No 57
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=45.04 E-value=37 Score=25.64 Aligned_cols=38 Identities=29% Similarity=0.206 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 160 EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 160 ~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
|.+|.++|.+++..+++.+.++ +.++-|+|++..|...
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~ 38 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGHLL 38 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-EE
T ss_pred CCcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCCEE
Confidence 4578999999999999999975 3468889999998765
No 58
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=32.53 E-value=1.8e+02 Score=22.77 Aligned_cols=56 Identities=21% Similarity=0.172 Sum_probs=44.5
Q ss_pred cEEE-EECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 026587 124 GKIY-GVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIA 180 (236)
Q Consensus 124 ~~Ly-~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~l~~~~~ 180 (236)
-.|| .+| .|......|-..|.+...+-+-+-..+-++.|.+||.++..........
T Consensus 43 i~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~~ 99 (150)
T COG0822 43 ITLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKE 99 (150)
T ss_pred EEEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3455 455 9999999999999998888887777777899999999998555555553
No 59
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=31.58 E-value=46 Score=29.00 Aligned_cols=71 Identities=24% Similarity=0.266 Sum_probs=43.4
Q ss_pred EEEEeCCCCcEEE-EECCCCceeeeCEEEEccC-hhhhHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCcEE
Q 026587 115 VGGWDKYEGGKIY-GVPLGGTIIEQPFAIGGSG-SSYLYGFFDQAWK-EGMTKEEAEQLVVKAVSLAIARDGASGGVVR 190 (236)
Q Consensus 115 iaG~d~~~g~~Ly-~idp~G~~~~~~~~aiG~g-~~~~~~~Le~~~~-~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~ 190 (236)
+.|.|+..|-.+| .....|.|... ..|.. -.-.++-|-+.|. .++|+|+|++|..-=..... +..++..|.
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsLPR~iG~--hp~sge~I~ 150 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLSLPRVIGK--HPDSGEEIS 150 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcCchhhCC--CCCCCcEEE
Confidence 3478977665554 66678887654 45655 4444555777777 57999999998543333333 233444443
No 60
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=30.87 E-value=88 Score=25.74 Aligned_cols=44 Identities=16% Similarity=0.058 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCC
Q 026587 166 EAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTL 209 (236)
Q Consensus 166 eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei 209 (236)
|++..++..|......|......+++.|||=+|.-+...+--++
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~ 65 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDA 65 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhH
Confidence 46677888888888889888889999999998766544443333
No 61
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=29.50 E-value=75 Score=22.25 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=32.3
Q ss_pred cEEEEEEcCCCeEEEeecCCCCchhhhhccCccccccc
Q 026587 188 VVRTVTINSEGVSRKFYPGDTLPLWHEELEPQNSLLDM 225 (236)
Q Consensus 188 ~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~~~~~~ 225 (236)
++++.+++.+|-...+-++.|+++.++-.+-.+-+|+|
T Consensus 39 ~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~l~~ 76 (81)
T cd06396 39 DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQGNLLQM 76 (81)
T ss_pred cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCCCEEEE
Confidence 89999999999988778888999999977777666664
No 62
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.37 E-value=1.7e+02 Score=20.65 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=25.7
Q ss_pred hhhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 026587 147 SSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAI 179 (236)
Q Consensus 147 ~~~~~~~Le~~~~~~~s~~eai~l~~~~l~~~~ 179 (236)
-..+..+|++...|++|+++++++=.+++....
T Consensus 31 lerakeiLe~LndpeisL~eSvkLYkeG~~lL~ 63 (86)
T PRK14065 31 VHSLEQAIDRLNDPNLSLKDGMDLYKTAMQELF 63 (86)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 456778899998999999999887766665544
No 63
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=27.02 E-value=2.7e+02 Score=24.07 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=40.4
Q ss_pred EEEEccChhhhHHHHHh----hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 140 FAIGGSGSSYLYGFFDQ----AWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 140 ~~aiG~g~~~~~~~Le~----~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
..++|.|..+++..+-. ..+..+++++|.+.+++-+..... ..+...-+..|+++|..-
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~~~ 249 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGEYG 249 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCCEE
Confidence 45799999888876554 334579999998877666544331 234556778888887753
No 64
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=26.44 E-value=27 Score=24.68 Aligned_cols=33 Identities=6% Similarity=0.001 Sum_probs=26.3
Q ss_pred EEEEEcCCCeEEEeecCCCCchhhhhccCcccc
Q 026587 190 RTVTINSEGVSRKFYPGDTLPLWHEELEPQNSL 222 (236)
Q Consensus 190 ~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~~~ 222 (236)
-|++.++++-.|++++|++|...|..-.-..++
T Consensus 20 ~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m 52 (85)
T PF00178_consen 20 IIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNM 52 (85)
T ss_dssp TEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-
T ss_pred eeEeeccCCCeEEecCHHHHHHHHHHHcCCccc
Confidence 358999887777899999999999887765544
No 65
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=26.15 E-value=2.7e+02 Score=27.67 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=91.9
Q ss_pred CccccceEEEEEeCC---EEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCC
Q 026587 11 PHSMGTTIIGVTYNG---GVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ 87 (236)
Q Consensus 11 ~v~~gtt~vgi~~~d---gvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (236)
...+|.|++.+..++ |++-.+|+--.. .....+++.+.+=+ .+..|| |-+...+.+-+++-.- .+--
T Consensus 512 ~~~~G~t~v~va~dg~~~g~i~~~D~~R~~----a~~aI~~L~~~Gi~-~~mLTG---Dn~~~A~~iA~~lGId--~v~A 581 (713)
T COG2217 512 LESEGKTVVFVAVDGKLVGVIALADELRPD----AKEAIAALKALGIK-VVMLTG---DNRRTAEAIAKELGID--EVRA 581 (713)
T ss_pred HHhcCCeEEEEEECCEEEEEEEEeCCCChh----HHHHHHHHHHCCCe-EEEEcC---CCHHHHHHHHHHcChH--hhec
Confidence 344688877777666 444445653321 12233566666666 555777 7777777776666442 2334
Q ss_pred CCCHHHHHHHHHHHHHcCcCccceeeEEE-EEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHh-hcCCC-CCH
Q 026587 88 PATVKVAANLVRLLSYNNKNFLQTGMIVG-GWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQ-AWKEG-MTK 164 (236)
Q Consensus 88 ~~~~~~la~~i~~~~~~~~rp~~vs~lia-G~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~-~~~~~-~s~ 164 (236)
.+.|+.-++.++++..+. ..-.++| |++ ..|.|-.=|- ..|+|+|+..+...-+- ..+.+ .+.
T Consensus 582 ellPedK~~~V~~l~~~g----~~VamVGDGIN--DAPALA~AdV--------GiAmG~GtDvA~eaADvvL~~~dL~~v 647 (713)
T COG2217 582 ELLPEDKAEIVRELQAEG----RKVAMVGDGIN--DAPALAAADV--------GIAMGSGTDVAIEAADVVLMRDDLSAV 647 (713)
T ss_pred cCCcHHHHHHHHHHHhcC----CEEEEEeCCch--hHHHHhhcCe--------eEeecCCcHHHHHhCCEEEecCCHHHH
Confidence 688898888888876443 1223333 232 2577765554 67899999988876443 22334 367
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026587 165 EEAEQLVVKAVSLAIAR 181 (236)
Q Consensus 165 ~eai~l~~~~l~~~~~~ 181 (236)
-++++++++.++.+.+.
T Consensus 648 ~~ai~lsr~t~~~IkqN 664 (713)
T COG2217 648 PEAIDLSRATRRIIKQN 664 (713)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999988764
No 66
>PF08622 Svf1: Svf1-like; InterPro: IPR013931 This entry represents oxidative stress survival proteins, such as Svf1. The protein Svf1 is required for yeast survival under conditions of oxidative stress, including cold stress []. Cells deficient in Svf1 have increased levels of reactive oxygen species (ROS) under certain conditions. ; GO: 0006979 response to oxidative stress
Probab=25.48 E-value=1.3e+02 Score=26.79 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=23.5
Q ss_pred EEEEeCCEEEEeE--eCccccCceeecCCCCceEEecCeEEEEecCChHHH
Q 026587 19 IGVTYNGGVVLGA--DSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADS 67 (236)
Q Consensus 19 vgi~~~dgvvlaa--d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 67 (236)
||...+|+=++++ |.....-.. ..+..-=+++-..|-+-..|...|.
T Consensus 205 vg~i~~~~kii~v~~~n~v~h~~~--~~D~~tgw~~P~~I~f~w~g~~~d~ 253 (325)
T PF08622_consen 205 VGSIVKDGKIIAVGSDNHVKHLET--KQDSETGWPEPKSIKFTWSGKTKDG 253 (325)
T ss_pred EEEEEeCCEEEEEecCceEEEccc--ccCCcCCCCCCccEEEEecCCcCCC
Confidence 6666666655555 332221111 1111112445556777788877773
No 67
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=25.04 E-value=1e+02 Score=19.22 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=25.5
Q ss_pred EEEECCCCceeeeCEEEEccChhhhHHHHHhhc
Q 026587 126 IYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAW 158 (236)
Q Consensus 126 Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~ 158 (236)
-|.+.|+|.....--...|.....+...||+..
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 367899999988777778887777777777644
No 68
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=24.85 E-value=38 Score=24.05 Aligned_cols=33 Identities=6% Similarity=0.023 Sum_probs=25.5
Q ss_pred EEEEEcCCCeEEEeecCCCCchhhhhccCcccc
Q 026587 190 RTVTINSEGVSRKFYPGDTLPLWHEELEPQNSL 222 (236)
Q Consensus 190 ~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~~~ 222 (236)
-|+|.++++-.|+++++++|...|..-.-.+.|
T Consensus 20 ~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M 52 (87)
T smart00413 20 IIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNM 52 (87)
T ss_pred eEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCC
Confidence 579999866666799999999999877644333
No 69
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=24.80 E-value=1.5e+02 Score=19.69 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 026587 71 SDYVRYFLHQHTIQLGQPATVKVAANLVR 99 (236)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~la~~i~ 99 (236)
+++++..........|+.++.+.+|..+.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 34455555666778899999999998774
No 70
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=24.20 E-value=2.1e+02 Score=21.32 Aligned_cols=63 Identities=21% Similarity=0.157 Sum_probs=44.4
Q ss_pred EeCCCCcE--E-EEECCC-CceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 026587 118 WDKYEGGK--I-YGVPLG-GTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVSLAIA 180 (236)
Q Consensus 118 ~d~~~g~~--L-y~idp~-G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~l~~~~~ 180 (236)
.++.-|-. | ..+|.. |.+.+..|.+.|.....+-.-+-..+-.+.|++||.++..+-+.....
T Consensus 30 ~n~~CGD~i~i~l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 30 GNPSCGDEIRIYLKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EETTTTEEEEEEEEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred cCCCCCCEEEEEEEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 44434534 3 367887 899999999999877776665555555688999998877666655553
No 71
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=24.05 E-value=3.3e+02 Score=23.27 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=38.1
Q ss_pred EEEEccChhhhHHHHHh----hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeE
Q 026587 140 FAIGGSGSSYLYGFFDQ----AWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVS 200 (236)
Q Consensus 140 ~~aiG~g~~~~~~~Le~----~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~ 200 (236)
..++|.|...++..+-. ..+..+++++|.+.+++-+... .+...-+..++++|..
T Consensus 176 ~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~~ 234 (248)
T cd04512 176 ASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGEF 234 (248)
T ss_pred EEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCCE
Confidence 56789999988877654 3345789999988766655533 2244557778888765
No 72
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=23.79 E-value=42 Score=27.12 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=27.3
Q ss_pred EEEEEcCCCeEEEeecCCCCchhhhhccCcccc
Q 026587 190 RTVTINSEGVSRKFYPGDTLPLWHEELEPQNSL 222 (236)
Q Consensus 190 ~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~~~ 222 (236)
-|+|-.++|-.|+.++|+||...|..-.-++.|
T Consensus 87 ~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~M 119 (177)
T KOG3806|consen 87 IIAWTGKDGLEFKLVDPDEVARLWGARKNKPNM 119 (177)
T ss_pred eeEEeCCCCceEEecCHHHHHHHHhhhhCCCCC
Confidence 468888899778899999999999987755544
No 73
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=23.39 E-value=92 Score=24.23 Aligned_cols=39 Identities=18% Similarity=0.432 Sum_probs=27.9
Q ss_pred cccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCe
Q 026587 13 SMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDN 55 (236)
Q Consensus 13 ~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~ 55 (236)
-.|-||+=|++|||..++..--.+-|. +.-+|+..+++.
T Consensus 7 ~~gktcllir~kdgafl~~~fistvgi----d~rnkli~~~~~ 45 (192)
T KOG0083|consen 7 CTGKTCLLIRFKDGAFLAGNFISTVGI----DFRNKLIDMDDK 45 (192)
T ss_pred ccCceEEEEEeccCceecCceeeeeee----ccccceeccCCc
Confidence 468999999999999998754444342 233677777764
No 74
>PRK11325 scaffold protein; Provisional
Probab=23.17 E-value=2e+02 Score=21.62 Aligned_cols=52 Identities=25% Similarity=0.319 Sum_probs=39.3
Q ss_pred EEE-EECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 026587 125 KIY-GVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAVS 176 (236)
Q Consensus 125 ~Ly-~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~l~ 176 (236)
.|| .+|+.|.+.+..|.+.|.....+-.-+-..+-.+.|++||..+..+.+.
T Consensus 42 ~l~l~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~ 94 (127)
T PRK11325 42 KLQIKVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIA 94 (127)
T ss_pred EEEEEECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHH
Confidence 444 5666789999999999988777777666666678899999888775443
No 75
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=21.66 E-value=3.5e+02 Score=21.86 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 026587 70 VSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSY 103 (236)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~~ 103 (236)
|.++.|..-..-+...+.+++...+|..|++.+.
T Consensus 2 LLeKtRkIN~lLQ~~~~~~v~F~~ia~vL~dvl~ 35 (177)
T PF06018_consen 2 LLEKTRKINRLLQKSAGEPVDFNDIAEVLSDVLE 35 (177)
T ss_dssp HHHHHHHHHHHHHSHTTSS--HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhc
Confidence 4455555444444457789999999999999865
No 76
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=20.36 E-value=32 Score=26.52 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCcCccceeeEEEEEeCC
Q 026587 64 AADSQTVSDYVRYFLHQHTIQLGQPA-TVKVAANLVRLLSYNNKNFLQTGMIVGGWDKY 121 (236)
Q Consensus 64 ~~D~~~l~~~~~~~~~~~~~~~~~~~-~~~~la~~i~~~~~~~~rp~~vs~liaG~d~~ 121 (236)
..|++.|.+++++.+++....++-++ +++=++..=+...-.++.|-.-+.+++.++++
T Consensus 38 p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~~C~r~c~vA~~~~~k~sYLFgdL~p~ 96 (143)
T COG5469 38 PSDGSILLDKLQELAQEWEIAHEFEIQTVECLAACNRGCVVAFSGPGKPSYLFGDLTPD 96 (143)
T ss_pred CCcHHHHHHHHHHHHhhhhhhccceeeeeHhhhhcCCCeEEEEecCCCceEEEccCCcc
Confidence 36889999999999999888887766 44434332111111223455555566666654
Done!