Query 026587
Match_columns 236
No_of_seqs 128 out of 1155
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 17:08:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_A 20S proteasome; multica 100.0 6.1E-51 2.1E-55 344.9 18.5 213 3-219 17-242 (243)
2 1ryp_C 20S proteasome; multica 100.0 1.1E-50 3.6E-55 343.6 18.6 216 3-218 19-243 (244)
3 3h4p_a Proteasome subunit beta 100.0 7.2E-50 2.5E-54 333.4 22.0 206 15-222 1-208 (219)
4 1ryp_E 20S proteasome; multica 100.0 9.1E-51 3.1E-55 343.6 16.8 214 3-219 14-238 (242)
5 1iru_C 20S proteasome; cell cy 100.0 1.4E-50 4.7E-55 346.1 18.0 219 3-221 19-245 (261)
6 1yar_H Proteasome beta subunit 100.0 1.5E-49 5.2E-54 331.0 23.8 206 9-218 2-209 (217)
7 1iru_A 20S proteasome; cell cy 100.0 1.8E-50 6.2E-55 342.6 18.2 215 3-219 23-245 (246)
8 1iru_H 20S proteasome; cell cy 100.0 5.2E-49 1.8E-53 324.9 25.7 200 16-215 1-200 (205)
9 1iru_E 20S proteasome; cell cy 100.0 3E-50 1E-54 340.3 18.1 210 3-216 22-241 (241)
10 1iru_B 20S proteasome; cell cy 100.0 3.9E-50 1.3E-54 337.9 17.3 210 3-217 19-233 (233)
11 1iru_N 20S proteasome; cell cy 100.0 4.3E-49 1.5E-53 328.6 23.0 209 9-220 2-216 (219)
12 3h4p_A Proteasome subunit alph 100.0 7.6E-50 2.6E-54 341.8 18.7 215 3-221 26-245 (264)
13 1ryp_D 20S proteasome; multica 100.0 1.4E-49 4.8E-54 336.1 19.2 213 3-219 16-237 (241)
14 1yar_A Proteasome alpha subuni 100.0 9.9E-50 3.4E-54 335.4 18.1 207 3-213 22-233 (233)
15 1j2q_H Proteasome beta subunit 100.0 1.3E-48 4.5E-53 321.8 24.3 199 16-217 1-201 (202)
16 1iru_L 20S proteasome; cell cy 100.0 2.6E-48 9E-53 320.5 24.9 203 16-221 1-204 (204)
17 1ryp_H 20S proteasome; multica 100.0 6.6E-48 2.2E-52 318.4 27.3 202 8-214 2-203 (205)
18 1ryp_N 20S proteasome; multica 100.0 7.7E-49 2.6E-53 330.0 21.5 210 9-220 2-226 (233)
19 3nzj_K Proteasome component PR 100.0 1.6E-48 5.5E-53 336.6 22.8 211 7-219 67-278 (287)
20 3unf_N Proteasome subunit beta 100.0 5.7E-48 2E-52 317.2 24.4 198 16-215 1-199 (199)
21 1iru_M 20S proteasome; cell cy 100.0 2.4E-47 8.2E-52 316.7 28.4 199 8-206 2-210 (213)
22 1iru_G 20S proteasome; cell cy 100.0 1.6E-49 5.4E-54 338.3 15.1 213 3-217 21-240 (254)
23 3unf_H Proteasome subunit beta 100.0 9.5E-48 3.2E-52 323.4 25.3 199 16-217 1-199 (234)
24 1ryp_L 20S proteasome; multica 100.0 6.4E-48 2.2E-52 320.0 23.6 203 16-220 1-204 (212)
25 1iru_D 20S proteasome; cell cy 100.0 2.6E-49 8.9E-54 335.8 15.2 213 3-220 17-236 (248)
26 1g0u_M Proteasome component PR 100.0 3.8E-48 1.3E-52 331.7 21.4 214 6-221 32-260 (266)
27 1ryp_M 20S proteasome; multica 100.0 6E-47 2.1E-51 316.4 27.8 199 8-206 2-219 (222)
28 1iru_F 20S proteasome; cell cy 100.0 2E-48 6.9E-53 333.0 19.2 213 3-220 20-240 (263)
29 3nzj_H Proteasome component PU 100.0 6E-47 2.1E-51 323.0 27.7 211 7-218 21-234 (261)
30 1ryp_F 20S proteasome; multica 100.0 2E-48 6.9E-53 327.5 17.7 205 3-213 19-233 (233)
31 1j2p_A Alpha-ring, proteasome 100.0 3E-48 1E-52 329.0 18.5 215 3-223 22-243 (246)
32 1ryp_B 20S proteasome; multica 100.0 6.7E-48 2.3E-52 327.5 18.5 212 3-216 19-250 (250)
33 1ryp_G 20S proteasome; multica 100.0 1.5E-47 5.3E-52 324.2 20.4 205 3-211 18-233 (244)
34 1iru_J 20S proteasome; cell cy 100.0 3.3E-46 1.1E-50 308.1 27.3 198 10-207 3-203 (205)
35 3nzj_F Proteasome component C1 100.0 5.9E-48 2E-52 333.3 17.3 208 3-212 22-239 (288)
36 1q5r_H Proteasome beta-type su 100.0 5.1E-47 1.7E-51 328.3 22.8 212 8-221 58-287 (294)
37 1ryp_J 20S proteasome; multica 100.0 7.2E-46 2.5E-50 305.9 27.5 197 9-206 2-201 (204)
38 1ryp_I 20S proteasome; multica 100.0 3.8E-46 1.3E-50 311.5 25.4 197 16-215 1-198 (222)
39 1ryp_K 20S proteasome; multica 100.0 4.8E-46 1.7E-50 305.5 24.8 189 16-206 2-194 (198)
40 3mi0_A Proteasome subunit alph 100.0 4.6E-47 1.6E-51 321.5 18.2 207 5-220 17-241 (248)
41 1iru_I 20S proteasome; cell cy 100.0 1.3E-45 4.5E-50 310.5 23.7 197 16-215 1-197 (234)
42 2jay_A Proteasome; hydrolase; 100.0 4.3E-46 1.5E-50 322.2 20.7 216 6-224 49-282 (291)
43 1q5q_H Proteasome beta-type su 100.0 1.2E-45 4.1E-50 311.0 22.0 202 16-219 1-220 (235)
44 1iru_K 20S proteasome; cell cy 100.0 6.5E-45 2.2E-49 299.5 24.4 186 16-201 2-190 (201)
45 1q5q_A Proteasome alpha-type s 100.0 6.3E-46 2.2E-50 316.8 15.4 210 4-222 16-241 (259)
46 2z3b_A ATP-dependent protease 100.0 1.5E-36 5.1E-41 245.7 21.0 169 12-194 2-179 (180)
47 1m4y_A ATP-dependent protease 100.0 9.4E-36 3.2E-40 239.0 20.2 165 16-194 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 2E-35 6.7E-40 237.8 21.0 166 16-195 1-173 (174)
49 2ky8_A Methyl-CPG-binding doma 34.7 18 0.00062 23.7 1.7 28 186-215 30-57 (72)
50 3fpw_A HBPS, extracellular HAE 30.5 84 0.0029 24.6 5.2 39 159-201 62-100 (192)
51 3c2i_A Methyl-CPG-binding prot 29.2 27 0.00094 24.3 1.9 30 185-216 40-69 (97)
52 1d9n_A Methyl-CPG-binding prot 28.5 22 0.00074 23.6 1.3 26 187-214 29-54 (75)
53 2a2l_A Unknown; structural gen 28.0 56 0.0019 24.2 3.7 38 160-201 10-47 (145)
54 3vxv_A Methyl-CPG-binding doma 24.7 38 0.0013 21.9 1.9 31 186-218 23-53 (69)
55 1vd2_A Protein kinase C, IOTA 20.2 50 0.0017 22.5 1.9 54 158-217 22-75 (89)
No 1
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=6.1e-51 Score=344.86 Aligned_cols=213 Identities=11% Similarity=0.056 Sum_probs=200.5
Q ss_pred ccccCCCCCccc-cceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSM-GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQH 81 (236)
Q Consensus 3 ~~~~~a~~~v~~-gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 81 (236)
.|.+||.+++++ |+|+|||+++||||||+|+|.+ +.++.+++.+|||+|++|++++++|+.+|++.+.++++.+++.|
T Consensus 17 ~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~ 95 (243)
T 1ryp_A 17 YQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEF 95 (243)
T ss_dssp HHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHH
Confidence 467899999999 9999999999999999999999 66667888999999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHh
Q 026587 82 TIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQ 156 (236)
Q Consensus 82 ~~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~ 156 (236)
++.++++++++.+|+++++++|.+ .|||+|++||||||+++||+||.+||+|++.+++++|+|+|++.++++||+
T Consensus 96 ~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~ 175 (243)
T 1ryp_A 96 RYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLEN 175 (243)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHH
Confidence 999999999999999999999543 479999999999997679999999999999999999999999999999999
Q ss_pred hcCC-------CCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCc
Q 026587 157 AWKE-------GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQ 219 (236)
Q Consensus 157 ~~~~-------~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~ 219 (236)
.|++ +||++||++++++||..+.++| .++++++|++|+++| ++.++++||+++++.++++
T Consensus 176 ~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g--~~~l~~~ei~~~~~~~~~~ 242 (243)
T 1ryp_A 176 HFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK--FFTLSAENIEERLVAIAEQ 242 (243)
T ss_dssp HHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE--EEECCHHHHHHHHHHHTTT
T ss_pred HhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC--eEECCHHHHHHHHHHhhcc
Confidence 9999 9999999999999999999999 789999999999999 4469999999999988654
No 2
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.1e-50 Score=343.58 Aligned_cols=216 Identities=16% Similarity=0.210 Sum_probs=203.5
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
.|.|||++++++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+
T Consensus 19 ~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 98 (244)
T 1ryp_C 19 YQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYL 98 (244)
T ss_dssp HHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999988768899999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+|+++++++|.+ .|||++++||||||+++||+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 99 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 178 (244)
T 1ryp_C 99 KTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD 178 (244)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHh
Confidence 99999999999999999998764 4799999999999954899999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEc--CCCeE--EEeecCCCCchhhhhccC
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN--SEGVS--RKFYPGDTLPLWHEELEP 218 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~--k~g~~--~~~l~~~ei~~~l~~~~~ 218 (236)
|+++||++||++++++||..+.++|..++++++|++|+ ++|.. ++.++++||+++++.++.
T Consensus 179 ~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~~~~ 243 (244)
T 1ryp_C 179 YKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTGI 243 (244)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHHHTC
T ss_pred hhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHHhhc
Confidence 99999999999999999999999966678999999999 99873 567999999999998864
No 3
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.2e-50 Score=333.41 Aligned_cols=206 Identities=24% Similarity=0.407 Sum_probs=193.9
Q ss_pred cceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026587 15 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (236)
Q Consensus 15 gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (236)
|+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeC-EEEEccChhhhHHHHHhhcCCCCCHHHHHHHHH
Q 026587 95 ANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQP-FAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVV 172 (236)
Q Consensus 95 a~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~ 172 (236)
++++++++|+++ +||++++||||||+++||+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||++||+++++
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~ 160 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLAL 160 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999999999875 799999999999986799999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCcccc
Q 026587 173 KAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQNSL 222 (236)
Q Consensus 173 ~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~~~ 222 (236)
+||..+.++|..++++++|++|+++|++. ++++||+++++.++..+..
T Consensus 161 ~al~~~~~rd~~sg~~i~v~vi~~~g~~~--l~~~ei~~~l~~~~~~~~~ 208 (219)
T 3h4p_a 161 NALKSAMERDTFSGNGISLAVITKDGVKI--FEDEEIEKILDSMKAKPKK 208 (219)
T ss_dssp HHHHHHHTSCSSCCSCCCEEEEETTEEEE--CCHHHHHHHHHHCC-----
T ss_pred HHHHHHHhhcCCCCCcEEEEEEeCCCeEE--cCHHHHHHHHHHhhccccc
Confidence 99999999999999999999999998664 9999999999999976643
No 4
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=9.1e-51 Score=343.56 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=202.6
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
.|.+||++++++|+|+|||+++||||||+|+|.++|.++ +++.+|||+|++|++++++|..+|++.+.++++.+++.|+
T Consensus 14 ~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 92 (242)
T 1ryp_E 14 FQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHN 92 (242)
T ss_dssp HHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999877 8889999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----------cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhH
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----------KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLY 151 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----------~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~ 151 (236)
+.++++++++.+++.+++++|.+ .|||++++||||||+++||+||.+||+|++.+++++|+|+|+.+++
T Consensus 93 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~ 172 (242)
T 1ryp_E 93 LYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQ 172 (242)
T ss_dssp HHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHH
Confidence 99999999999999999998874 6799999999999955799999999999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCc
Q 026587 152 GFFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQ 219 (236)
Q Consensus 152 ~~Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~ 219 (236)
++||+.|+++||++||++++++||..+.++ ..++++++|++|+++|. ++.++++||+++++.++.+
T Consensus 173 ~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~~~~~ei~~~~~~~~~~ 238 (242)
T 1ryp_E 173 AELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDG-FKIYDNEKTAELIKELKEK 238 (242)
T ss_dssp HHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTE-EEECCHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCC-eEECCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 67789999999999997 4579999999999988643
No 5
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.4e-50 Score=346.06 Aligned_cols=219 Identities=19% Similarity=0.224 Sum_probs=206.6
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.+||++++++|||+|||+++||||||+|+|.++|.++.+.+.+|||+|++|++++++|..+|++.++++++.+++.|+
T Consensus 19 ~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 98 (261)
T 1iru_C 19 YQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYL 98 (261)
T ss_dssp HHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999888779999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+|+.+++++|.+ .|||++++||||||+++||+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus 99 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 178 (261)
T 1iru_C 99 LQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQD 178 (261)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHh
Confidence 99999999999999999999876 3799999999999965799999999999999999999999999999999999
Q ss_pred cCC-CCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCe--EEEeecCCCCchhhhhccCccc
Q 026587 158 WKE-GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGV--SRKFYPGDTLPLWHEELEPQNS 221 (236)
Q Consensus 158 ~~~-~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~--~~~~l~~~ei~~~l~~~~~~~~ 221 (236)
|++ +||++||++++++||..+.++|..++++++|++|+++|. .++.++++||++++..+.....
T Consensus 179 ~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~~~~~ 245 (261)
T 1iru_C 179 YKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEA 245 (261)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHHTTTT
T ss_pred hccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHHHhchh
Confidence 999 999999999999999999999999999999999999985 2567999999999999864433
No 6
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.5e-49 Score=331.02 Aligned_cols=206 Identities=25% Similarity=0.430 Sum_probs=191.3
Q ss_pred CCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCC
Q 026587 9 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQP 88 (236)
Q Consensus 9 ~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (236)
.+++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 2 NQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 46889999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHH
Q 026587 89 ATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEA 167 (236)
Q Consensus 89 ~~~~~la~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 167 (236)
++++.+++++++.+|.+| |||++++|+|||| +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||.+||
T Consensus 82 ~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 159 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEG 159 (217)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHH
Confidence 999999999999999875 7999999999999 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEEcC-CCeEEEeecCCCCchhhhhccC
Q 026587 168 EQLVVKAVSLAIARDGASGGVVRTVTINS-EGVSRKFYPGDTLPLWHEELEP 218 (236)
Q Consensus 168 i~l~~~~l~~~~~~d~~~~~~i~i~ii~k-~g~~~~~l~~~ei~~~l~~~~~ 218 (236)
++++++||..+.++|..++++++|++|++ +|++ .++++||+++++.++.
T Consensus 160 ~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~--~~~~~ei~~~~~~~~~ 209 (217)
T 1yar_H 160 VDLVIRAISAAKQRDSASGGMIDVAVITRKDGYV--QLPTDQIESRIRKLGL 209 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEE--ECCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEE--EcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 7755 4999999999988764
No 7
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.8e-50 Score=342.56 Aligned_cols=215 Identities=15% Similarity=0.162 Sum_probs=202.4
Q ss_pred ccccCCCCCccc-cceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSM-GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQH 81 (236)
Q Consensus 3 ~~~~~a~~~v~~-gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~ 81 (236)
.|.+||.+++++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|
T Consensus 23 ~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 101 (246)
T 1iru_A 23 YQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANW 101 (246)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 367899999999 9999999999999999999999 56677888999999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHh
Q 026587 82 TIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQ 156 (236)
Q Consensus 82 ~~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~ 156 (236)
++.++++++++.+|+.+++++|.+ .|||++++||||||+++||+||.+||+|++.+++++|+|+|++.++++||+
T Consensus 102 ~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~ 181 (246)
T 1iru_A 102 KYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEK 181 (246)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHH
Confidence 999999999999999999986543 479999999999997679999999999999999999999999999999999
Q ss_pred hcCC--CCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCc
Q 026587 157 AWKE--GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQ 219 (236)
Q Consensus 157 ~~~~--~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~ 219 (236)
.|++ +||++||++++++||..+.++| .++++++|++|+++|.+++.++++|++++++.++..
T Consensus 182 ~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~~~~ 245 (246)
T 1iru_A 182 KVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAER 245 (246)
T ss_dssp HTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCHHHHHHHHHHHHTC
T ss_pred hhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCHHHHHHHHHHhhcc
Confidence 9999 9999999999999999999999 889999999999999877789999999999988643
No 8
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=5.2e-49 Score=324.95 Aligned_cols=200 Identities=51% Similarity=0.920 Sum_probs=194.3
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
||+|||+++||||||+|+|.++|.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHHH
Q 026587 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAV 175 (236)
Q Consensus 96 ~~i~~~~~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~l 175 (236)
+++++.+|.++.||++++|+||||+++||+||.+||+|++.+++++++|+|+++++++||+.|+++||.+||++++++||
T Consensus 81 ~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~al 160 (205)
T 1iru_H 81 SLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 160 (205)
T ss_dssp HHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999998899999999999986789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhh
Q 026587 176 SLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 215 (236)
Q Consensus 176 ~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~ 215 (236)
..+.++|..++++++|++|+++|.+++.++++||++++++
T Consensus 161 ~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 161 ALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 9999999999999999999999998888999999999986
No 9
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=3e-50 Score=340.26 Aligned_cols=210 Identities=18% Similarity=0.251 Sum_probs=199.6
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.|||++++++|||+|||+++||||||+|+|.++|.++ +++.+||++|+++++++++|..+|++.+.++++.+++.|+
T Consensus 22 ~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 100 (241)
T 1iru_E 22 FQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHW 100 (241)
T ss_dssp HHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999887 8889999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC----------cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHH
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN----------KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYG 152 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~----------~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~ 152 (236)
+.++++++++.++++++++++.+ +|||++++||||||+ +||+||.+||+|++.+++++|+|+|++.+++
T Consensus 101 ~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~ 179 (241)
T 1iru_E 101 FTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQS 179 (241)
T ss_dssp HHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCCCcEEecceEEECCCcHHHHH
Confidence 99999999999999999998765 569999999999995 8999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhc
Q 026587 153 FFDQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEEL 216 (236)
Q Consensus 153 ~Le~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~ 216 (236)
+||+.|+++||.+||++++++||..+.++ ..++++++|++|+++|. ++.++++|++++++++
T Consensus 180 ~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~l~~~ei~~~~~~~ 241 (241)
T 1iru_E 180 SLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQN-FHMFTKEELEEVIKDI 241 (241)
T ss_dssp HHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSC-CEECCHHHHHHHHTTC
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCC-eEECCHHHHHHHHHhC
Confidence 99999999999999999999999999998 77899999999999997 4579999999998764
No 10
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=3.9e-50 Score=337.89 Aligned_cols=210 Identities=14% Similarity=0.216 Sum_probs=198.0
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
.|.|||++++++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+
T Consensus 19 ~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 97 (233)
T 1iru_B 19 VQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYY 97 (233)
T ss_dssp HHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCC-SSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCc-cccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999984 56678889999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+++++++++|.+ .|||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 98 ~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~ 176 (233)
T 1iru_B 98 LVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKR 176 (233)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHH
Confidence 99999999999999999999765 369999999999995 799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhcc
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELE 217 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~ 217 (236)
|+++||.+||++++++||..+.++| .++++++|++|+++|++ .++++||+++++.+.
T Consensus 177 ~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~--~l~~~ei~~~~~~~~ 233 (233)
T 1iru_B 177 YNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFR--RLTPTEVKDYLAAIA 233 (233)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEE--ECCHHHHHHHHTTCC
T ss_pred hccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEE--ECCHHHHHHHHHhcC
Confidence 9999999999999999999999999 67899999999999954 599999999998763
No 11
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=4.3e-49 Score=328.58 Aligned_cols=209 Identities=22% Similarity=0.285 Sum_probs=199.2
Q ss_pred CCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHH-HhCC
Q 026587 9 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI-QLGQ 87 (236)
Q Consensus 9 ~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 87 (236)
++++++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++ .+++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999888899999999999999999999999999999999999999998 8999
Q ss_pred CCCHHHHHHHHHHHHHcC---cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCC--CC
Q 026587 88 PATVKVAANLVRLLSYNN---KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE--GM 162 (236)
Q Consensus 88 ~~~~~~la~~i~~~~~~~---~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~ 162 (236)
+++++.+|+++++.+|.+ .|||++++|+||+|+ +||+||.+||+|++.+++++|+|+|+++++++||+.|++ +|
T Consensus 82 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~m 160 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL 160 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCC
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCC
Confidence 999999999999998875 479999999999997 699999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCcc
Q 026587 163 TKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQN 220 (236)
Q Consensus 163 s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~ 220 (236)
|.+||++++++||..+.++|..++++++|++|+++|++ .++++|++..|...++.+
T Consensus 161 t~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~--~~~~~~i~~~~~~~~~~~ 216 (219)
T 1iru_N 161 SQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVE--IEGPLSTETNWDIAHMIS 216 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEE--EEEEECCCCCCGGGGCSC
T ss_pred CHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEE--EcCCeeccchhhHHHhhc
Confidence 99999999999999999999999999999999999965 489999999998877654
No 12
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.6e-50 Score=341.76 Aligned_cols=215 Identities=21% Similarity=0.318 Sum_probs=202.7
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.+||++++++|+|+|||+++||||||+|+|.+++. +.+++.+|||+|++|++++++|+.+|++.++++++.+++.|+
T Consensus 26 ~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~l-i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~ 104 (264)
T 3h4p_A 26 YQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKL-VKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYR 104 (264)
T ss_dssp HHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTT-BCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHH
T ss_pred HHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCc-cccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhH
Confidence 4679999999999999999999999999999999984 567899999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCc-----CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~~-----rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+|+++++++|.++ |||+|++||||||+ +||+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus 105 ~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~ 183 (264)
T 3h4p_A 105 LTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKE 183 (264)
T ss_dssp HTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHh
Confidence 999999999999999999988753 69999999999997 799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCccc
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQNS 221 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~~ 221 (236)
|+++||++||++++++||..+.++ .++++++|++|++++..++.++++||+++++.++....
T Consensus 184 ~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~~~~~ 245 (264)
T 3h4p_A 184 YRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKKLN 245 (264)
T ss_dssp CCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTTTSSS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999986 68899999999998777778999999999999875543
No 13
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.4e-49 Score=336.14 Aligned_cols=213 Identities=18% Similarity=0.266 Sum_probs=200.6
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
.|.+||++++++|+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|+
T Consensus 16 ~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 95 (241)
T 1ryp_D 16 FQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHR 95 (241)
T ss_dssp HHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999998877789999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCC-CCcEEEEECCCCceeeeCEEEEccChhhhHHHHHh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKY-EGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQ 156 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~-~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~ 156 (236)
+.++++++++.+|+++++++|.+ .|||++++||||||++ ++|+||.+||+|++.+++++|+|+|++.++++||+
T Consensus 96 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~ 175 (241)
T 1ryp_D 96 LTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEK 175 (241)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHH
Confidence 99999999999999999999875 3699999999999975 78999999999999999999999999999999999
Q ss_pred hc---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCc
Q 026587 157 AW---KEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQ 219 (236)
Q Consensus 157 ~~---~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~ 219 (236)
.| +++||++||++++++||..+.+ .++++++|++|+++|. ++.++++|++++++.++..
T Consensus 176 ~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~-~~~l~~~ei~~~~~~~~~~ 237 (241)
T 1ryp_D 176 NYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSD-IVALSSEEINQYVTQIEQE 237 (241)
T ss_dssp TCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTE-EEECCHHHHHHHHHHHTHH
T ss_pred hhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCc-EEECCHHHHHHHHHHHhhh
Confidence 99 9999999999999999999996 6789999999999974 4569999999999988643
No 14
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=9.9e-50 Score=335.44 Aligned_cols=207 Identities=20% Similarity=0.320 Sum_probs=195.3
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.|||.+++++|+|+|||+++||||||+|+|.+++. +.+++.+||++|++|++++++|..+|++.+.++++.+++.|+
T Consensus 22 ~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~-~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 100 (233)
T 1yar_A 22 FQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRL-IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEK 100 (233)
T ss_dssp HHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTT-BCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCccc-ccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999984 567888999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCc-----CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~~-----rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+|+++++++|.++ |||++++|+||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.
T Consensus 101 ~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~ 179 (233)
T 1yar_A 101 VTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLERE 179 (233)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHH
Confidence 999999999999999999998753 69999999999998 799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhh
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWH 213 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l 213 (236)
|+++||.+||++++++||..+.++|. ++++++|++|+++|. ++.++++||++++
T Consensus 180 ~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~-~~~~~~~ei~~~l 233 (233)
T 1yar_A 180 YKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNK-YRIYDQEEVKKFL 233 (233)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSC-CEECCHHHHHTTC
T ss_pred hccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 99999999999999999999999987 789999999999985 3469999988764
No 15
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.3e-48 Score=321.83 Aligned_cols=199 Identities=27% Similarity=0.430 Sum_probs=191.5
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
||+|||+++||||||+|+|.++|.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeC-EEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHH
Q 026587 96 NLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQP-FAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVK 173 (236)
Q Consensus 96 ~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~ 173 (236)
+++++.+|.++ |||++++|+||||+ +||+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||++||++++++
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~ 159 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVR 159 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHH
Confidence 99999999875 79999999999998 799999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhcc
Q 026587 174 AVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELE 217 (236)
Q Consensus 174 ~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~ 217 (236)
||..+.++|..++++++|++|+++|++ .++++|++++++.++
T Consensus 160 al~~~~~~d~~s~~~i~v~vi~~~g~~--~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 160 AIYSAMKRDSASGDGIDVVKITEDEFY--QYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHTTCTTSCSCEEEEEECSSCEE--ECHHHHHHHHGGGTT
T ss_pred HHHHHHhcCCCCCCcEEEEEEeCCCeE--EeCHHHHHHHHHHhh
Confidence 999999999999999999999999855 499999999998874
No 16
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2.6e-48 Score=320.49 Aligned_cols=203 Identities=28% Similarity=0.417 Sum_probs=193.0
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
||+|||+++||||||+|+|.++|.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHH
Q 026587 96 NLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKA 174 (236)
Q Consensus 96 ~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~ 174 (236)
+++++.+|.+| +||++++|+||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||.+||++++++|
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~a 159 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRA 159 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 99999999886 58999999999997 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCccc
Q 026587 175 VSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQNS 221 (236)
Q Consensus 175 l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~~ 221 (236)
|..+.++|..++++++|++|+++|+++ ++++|+++++++++...|
T Consensus 160 l~~~~~rd~~s~~~i~v~vi~~~g~~~--l~~~ei~~~~~~~~~~~~ 204 (204)
T 1iru_L 160 IYQATYRDAYSGGAVNLYHVREDGWIR--VSSDNVADLHEKYSGSTP 204 (204)
T ss_dssp HHHHHHHBTTCCSEEEEEEECSSCEEE--EEEEEHHHHHHHHTC---
T ss_pred HHHHHHhCccCCCceEEEEEeCCceEE--eCHHHHHHHHHHhccCCC
Confidence 999999999899999999999999664 999999999999876543
No 17
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=6.6e-48 Score=318.39 Aligned_cols=202 Identities=44% Similarity=0.808 Sum_probs=191.8
Q ss_pred CCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCC
Q 026587 8 FNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ 87 (236)
Q Consensus 8 a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (236)
.++++++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++.+++
T Consensus 2 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T 1ryp_H 2 KKGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT 81 (205)
T ss_dssp CTTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHH
Q 026587 88 PATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEA 167 (236)
Q Consensus 88 ~~~~~~la~~i~~~~~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ea 167 (236)
++++.+|+++++.+|.+|..|++++|+||||+++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||.+||
T Consensus 82 -~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 160 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEET 160 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHH
T ss_pred -CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHH
Confidence 9999999999999999876699999999999767899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhh
Q 026587 168 EQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHE 214 (236)
Q Consensus 168 i~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~ 214 (236)
++++++||..+.++|..++++++|++|+++|.+++.+ +..+++
T Consensus 161 ~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~----~~~~~~ 203 (205)
T 1ryp_H 161 VDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF----YPDEYE 203 (205)
T ss_dssp HHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE----CHHHHT
T ss_pred HHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe----cccccc
Confidence 9999999999999999999999999999999988655 445544
No 18
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=7.7e-49 Score=330.05 Aligned_cols=210 Identities=19% Similarity=0.249 Sum_probs=199.6
Q ss_pred CCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHH-----
Q 026587 9 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI----- 83 (236)
Q Consensus 9 ~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 83 (236)
++++++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 689999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCc---CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCC
Q 026587 84 QLGQPATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKE 160 (236)
Q Consensus 84 ~~~~~~~~~~la~~i~~~~~~~~---rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 160 (236)
.++++++++.+|+++++.+|.++ |||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|++
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 161 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDR 161 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSS
T ss_pred hcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhcc
Confidence 89999999999999999998764 799999999999985699999999999999999999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCC-CeEEEeecCCCCchh-hhhccCcc
Q 026587 161 -----GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE-GVSRKFYPGDTLPLW-HEELEPQN 220 (236)
Q Consensus 161 -----~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~-g~~~~~l~~~ei~~~-l~~~~~~~ 220 (236)
+||++||++++++||..+.++|..++++++|++|+++ |++. ++++||+++ |+..++..
T Consensus 162 ~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~--~~~~~i~~~~w~~~~~~~ 226 (233)
T 1ryp_N 162 ESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTF--KKNLQVENMKWDFAKDIK 226 (233)
T ss_dssp GGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEE--EEEEECCSCCCGGGGGCC
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEE--cChHhcccccchhhhhcc
Confidence 9999999999999999999999999999999999999 8664 899999999 98777654
No 19
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1.6e-48 Score=336.61 Aligned_cols=211 Identities=25% Similarity=0.379 Sum_probs=192.9
Q ss_pred CCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhC
Q 026587 7 DFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLG 86 (236)
Q Consensus 7 ~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 86 (236)
++..++.+|||+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++.++
T Consensus 67 ~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~ 146 (287)
T 3nzj_K 67 DCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREK 146 (287)
T ss_dssp ---------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHH
Q 026587 87 QPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKE 165 (236)
Q Consensus 87 ~~~~~~~la~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~ 165 (236)
++++++.+++++++++|.+| +||++++||||||+++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++
T Consensus 147 ~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~e 226 (287)
T 3nzj_K 147 ERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVE 226 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHH
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHH
Confidence 99999999999999999886 69999999999996689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCc
Q 026587 166 EAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQ 219 (236)
Q Consensus 166 eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~ 219 (236)
||++++++||..+.+||..++++++|++|+++|+++ ++++||++++.++++.
T Consensus 227 EAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~--l~~~ev~~~l~~~~e~ 278 (287)
T 3nzj_K 227 DALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIY--HGNHDVGELFWKVKEE 278 (287)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE--EEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEE--eCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999664 9999999976655543
No 20
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=5.7e-48 Score=317.24 Aligned_cols=198 Identities=47% Similarity=0.819 Sum_probs=189.2
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
||+|||+++||||||+|+|.++|.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcCccceeeEEEEEeCCCCcEEEEECCCCceee-eCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHH
Q 026587 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIE-QPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKA 174 (236)
Q Consensus 96 ~~i~~~~~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~-~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~ 174 (236)
+++++++|++++||++++||||||++++|+||. |+|++.+ ..++++|+|+++++++||+.|+++||++||++++++|
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~a 158 (199)
T 3unf_N 81 NVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNA 158 (199)
T ss_dssp HHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999867899999 9998765 4566679999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhh
Q 026587 175 VSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 215 (236)
Q Consensus 175 l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~ 215 (236)
|..+.++|..++++++|++|+++|..++.++++||+++|++
T Consensus 159 l~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 199 (199)
T 3unf_N 159 ITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 199 (199)
T ss_dssp HHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCCC
T ss_pred HHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCcccccC
Confidence 99999999999999999999999998889999999999863
No 21
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2.4e-47 Score=316.71 Aligned_cols=199 Identities=23% Similarity=0.291 Sum_probs=189.0
Q ss_pred CCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCC
Q 026587 8 FNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ 87 (236)
Q Consensus 8 a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (236)
+.+.+++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|++.+++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (213)
T 1iru_M 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81 (213)
T ss_dssp CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46778999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh---------
Q 026587 88 PATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA--------- 157 (236)
Q Consensus 88 ~~~~~~la~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~--------- 157 (236)
+++++.+|+++++.+|.++ |||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 82 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~ 161 (213)
T 1iru_M 82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV 161 (213)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred CCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccccc
Confidence 9999999999999998765 799999999999975669999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecC
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPG 206 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~ 206 (236)
|+++||++||++++++||..+.++|..++++++|++|+++|++.+.++.
T Consensus 162 ~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~ 210 (213)
T 1iru_M 162 EHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSL 210 (213)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEEeec
Confidence 8899999999999999999999999999999999999999998765543
No 22
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.6e-49 Score=338.26 Aligned_cols=213 Identities=15% Similarity=0.160 Sum_probs=199.7
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
.|.+||.+++++|+|+|||+++||||||+|+|.+++.++ .++.+|||+|++|++++++|..+|++.+.++++.+++.|+
T Consensus 21 ~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 99 (254)
T 1iru_G 21 FQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFR 99 (254)
T ss_dssp HHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999887 4788999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCc-----CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNNK-----NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~~-----rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+++++++++|.++ |||++++||||||+++||+||.+||+|++.+++++|+|+|++.++++||+.
T Consensus 100 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 179 (254)
T 1iru_G 100 SNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL 179 (254)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTS
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHh
Confidence 999999999999999999998774 799999999999955899999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCC--CeEEEeecCCCCchhhhhcc
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE--GVSRKFYPGDTLPLWHEELE 217 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~--g~~~~~l~~~ei~~~l~~~~ 217 (236)
|+++||++||++++++||+.+.+++..++.+++|++|+++ |. ++.+++++++++++.++
T Consensus 180 ~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~-~~~l~~~~i~~~~~~~~ 240 (254)
T 1iru_G 180 QMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGR-HEIVPKDIREEAEKYAK 240 (254)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTC-CEECCHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCC-eEECCHHHHHHHHHHHH
Confidence 9999999999999999999998887767889999999987 62 34599999999998763
No 23
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=9.5e-48 Score=323.39 Aligned_cols=199 Identities=27% Similarity=0.469 Sum_probs=192.8
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
||+|||+++||||||+|+|.++|.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 79999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHHH
Q 026587 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAV 175 (236)
Q Consensus 96 ~~i~~~~~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~l 175 (236)
+++++.+|++++||++++|+||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~l~~~~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al 159 (234)
T 3unf_H 81 RILRQTLFRYQGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAI 159 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhcc
Q 026587 176 SLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELE 217 (236)
Q Consensus 176 ~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~ 217 (236)
..+.++|..++++++|++|+++|++. +.+++++..|...+
T Consensus 160 ~~~~~~D~~sg~~iev~vi~~dg~~~--l~~~~i~~~~~~~~ 199 (234)
T 3unf_H 160 TAGILSDLGSGGNVDACVITAGGAKL--QRALSTPTEPVQRA 199 (234)
T ss_dssp HHHHHHBTTCCSCEEEEEEESSCEEE--EEEEECCCCCCCCC
T ss_pred HHHHhhcCCCCCcEEEEEEECCCEEE--eCceeccccccccc
Confidence 99999999999999999999999875 89999999888765
No 24
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=6.4e-48 Score=320.03 Aligned_cols=203 Identities=24% Similarity=0.394 Sum_probs=192.5
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHH
Q 026587 96 NLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKA 174 (236)
Q Consensus 96 ~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~ 174 (236)
+++++.+|.++ .||++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++|
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~a 160 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRS 160 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Confidence 99999999886 49999999999996579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCcc
Q 026587 175 VSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQN 220 (236)
Q Consensus 175 l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~ 220 (236)
|..+.++|..++++++|++|+++|++ .++++|+++++..++...
T Consensus 161 l~~~~~rd~~s~~~i~v~vi~~~g~~--~~~~~ei~~~~~~~~~~~ 204 (212)
T 1ryp_L 161 ILAAAHRDAYSGGSVNLYHVTEDGWI--YHGNHDVGELFWKVKEEE 204 (212)
T ss_dssp HHHHHHHBTTCCSEEEEEEEETTEEE--EEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCceEEEEEcCCceE--EECHHHHHHHHHHHHHhh
Confidence 99999999999999999999999865 499999999976665433
No 25
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.6e-49 Score=335.82 Aligned_cols=213 Identities=20% Similarity=0.307 Sum_probs=199.5
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
.|.+||++++++|+|+|||+++||||||+|+|.+++. +.+++.+|||+|++|++++++|..+|++.+.++++.+++.|+
T Consensus 17 ~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 95 (248)
T 1iru_D 17 FQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHR 95 (248)
T ss_dssp HHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSS-SCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccC-ccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999995 567888999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+|+++++++|.+ +|||++++||||||+++||+||.+||+|++.+++++|+|+|++.++++||+.
T Consensus 96 ~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~ 175 (248)
T 1iru_D 96 LTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKN 175 (248)
T ss_dssp HHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHh
Confidence 99999999999999999999876 3699999999999955799999999999999999999999999999999999
Q ss_pred cCCCC--CHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCcc
Q 026587 158 WKEGM--TKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQN 220 (236)
Q Consensus 158 ~~~~~--s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~ 220 (236)
|+++| |++||++++++||..+.+ .++++++|++|+++|. ++.++++||+++++.++.+.
T Consensus 176 ~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~-~~~l~~~ei~~~~~~~~~~~ 236 (248)
T 1iru_D 176 YTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQS-LKILNPEEIEKYVAEIEKEK 236 (248)
T ss_dssp CCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSC-EECCCHHHHHHHTTTTTTTT
T ss_pred hcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCc-EEECCHHHHHHHHHHHHhcc
Confidence 99999 999999999999999996 4688999999999994 34699999999999987654
No 26
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=3.8e-48 Score=331.73 Aligned_cols=214 Identities=18% Similarity=0.242 Sum_probs=201.5
Q ss_pred cCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHH--
Q 026587 6 EDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI-- 83 (236)
Q Consensus 6 ~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-- 83 (236)
+.+.+++++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..+|++.+.+++|.+++.|++
T Consensus 32 ~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~ 111 (266)
T 1g0u_M 32 VNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDN 111 (266)
T ss_dssp --CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhcc
Confidence 456789999999999999999999999999999888899999999999999999999999999999999999999998
Q ss_pred ---HhCCCCCHHHHHHHHHHHHHcCc---CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 84 ---QLGQPATVKVAANLVRLLSYNNK---NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 84 ---~~~~~~~~~~la~~i~~~~~~~~---rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
.++++++++.+|+++++.+|.++ |||++++||||||++++|+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus 112 ~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 191 (266)
T 1g0u_M 112 PLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKV 191 (266)
T ss_dssp TTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTT
T ss_pred chhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHh
Confidence 89999999999999999998764 799999999999985699999999999999999999999999999999999
Q ss_pred cCC-----CCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCC-CeEEEeecCCCCchh-hhhccCccc
Q 026587 158 WKE-----GMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSE-GVSRKFYPGDTLPLW-HEELEPQNS 221 (236)
Q Consensus 158 ~~~-----~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~-g~~~~~l~~~ei~~~-l~~~~~~~~ 221 (236)
|++ +||++||++++++||+.+.++|..++++++|++|+++ |++. ++++||+++ |+..++..+
T Consensus 192 ~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~--~~~~ei~~~~w~~~~~~~~ 260 (266)
T 1g0u_M 192 VDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTF--KKNLQVENMKWDFAKDIKG 260 (266)
T ss_dssp CSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEE--EEEEECCCCCCGGGGGCCS
T ss_pred hcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEE--cCHHHhhhhhhhHHhhhcC
Confidence 999 9999999999999999999999999999999999999 8664 899999999 988877654
No 27
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=6e-47 Score=316.36 Aligned_cols=199 Identities=23% Similarity=0.321 Sum_probs=189.5
Q ss_pred CCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhC-
Q 026587 8 FNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLG- 86 (236)
Q Consensus 8 a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~- 86 (236)
+.+.+++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (222)
T 1ryp_M 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND 81 (222)
T ss_dssp CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCc-CccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh--------
Q 026587 87 QPATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA-------- 157 (236)
Q Consensus 87 ~~~~~~~la~~i~~~~~~~~-rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~-------- 157 (236)
++++++.+|+++++.+|.+| +||++++||||||++++|+||.+||.|++.+++++|+|+|+.+++++||+.
T Consensus 82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~ 161 (222)
T 1ryp_M 82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYE 161 (222)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccc
Confidence 99999999999999998875 699999999999975679999999999999999999999999999999998
Q ss_pred ---------cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecC
Q 026587 158 ---------WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPG 206 (236)
Q Consensus 158 ---------~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~ 206 (236)
|+++||++||++++++||..+.++|..++++++|++|+++|++.+.++.
T Consensus 162 ~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~ 219 (222)
T 1ryp_M 162 PGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYEL 219 (222)
T ss_dssp TTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEC
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEEEeec
Confidence 8899999999999999999999999999999999999999998866543
No 28
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2e-48 Score=332.96 Aligned_cols=213 Identities=15% Similarity=0.204 Sum_probs=199.4
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.+||++++++|+|+|||+++||||||+|+|.+++.. ++.+|||+|++|++++++|..+|++.+.++++.+++.|+
T Consensus 20 ~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~---~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 96 (263)
T 1iru_F 20 HQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSR 96 (263)
T ss_dssp HHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc---cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999853 477999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+++++++++|.+ +|||++++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.
T Consensus 97 ~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 175 (263)
T 1iru_F 97 FVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERH 175 (263)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHH
Confidence 99999999999999999999853 479999999999997 799999999999999999999999999999999999
Q ss_pred cCC--CCCHHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhccCcc
Q 026587 158 WKE--GMTKEEAEQLVVKAVSLAIARD-GASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELEPQN 220 (236)
Q Consensus 158 ~~~--~~s~~eai~l~~~~l~~~~~~d-~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~ 220 (236)
|++ +||++||++++++||..+.++| ..++++++|++|++++. ++.++++||+++++.++.+.
T Consensus 176 ~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~-~~~l~~~ei~~~~~~~~~~~ 240 (263)
T 1iru_F 176 MSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLE-FTIYDDDDVSPFLEGLEERP 240 (263)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEE-EEEECSGGGHHHHTTCCCCC
T ss_pred hcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCC-eEECCHHHHHHHHHHHhccc
Confidence 998 9999999999999999999999 47899999999999953 34699999999999997443
No 29
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=6e-47 Score=322.99 Aligned_cols=211 Identities=24% Similarity=0.380 Sum_probs=186.8
Q ss_pred CCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhC
Q 026587 7 DFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLG 86 (236)
Q Consensus 7 ~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 86 (236)
..++++++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.++
T Consensus 21 ~~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~ 100 (261)
T 3nzj_H 21 TQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS 100 (261)
T ss_dssp ---------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhC
Confidence 46789999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCcCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHH
Q 026587 87 QPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEE 166 (236)
Q Consensus 87 ~~~~~~~la~~i~~~~~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~e 166 (236)
++++++.+++++++.++++++||++++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++|
T Consensus 101 ~~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eE 179 (261)
T 3nzj_H 101 REPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEE 179 (261)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHH
Confidence 9999999999999999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCe-EE--EeecCCCCchhhhhccC
Q 026587 167 AEQLVVKAVSLAIARDGASGGVVRTVTINSEGV-SR--KFYPGDTLPLWHEELEP 218 (236)
Q Consensus 167 ai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~-~~--~~l~~~ei~~~l~~~~~ 218 (236)
|++++++||..+.++|..++++++|++|+++|. +. .+..+.+.........+
T Consensus 180 A~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~~~~~~~~~~ 234 (261)
T 3nzj_H 180 AIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKF 234 (261)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCCSSCCCC
T ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCcccccccccCC
Confidence 999999999999999999999999999999993 32 33344444433333333
No 30
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=2e-48 Score=327.48 Aligned_cols=205 Identities=19% Similarity=0.260 Sum_probs=192.0
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
.|.|||++++++|+|+|||+++||||||+|+|.+.+.. ++.+||++|++|++++++|..+|++.+.++++.+++.|+
T Consensus 19 ~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 95 (233)
T 1ryp_F 19 FQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSS 95 (233)
T ss_dssp HHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999853 477999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+++.+++++|.+ .|||++++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.
T Consensus 96 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~ 174 (233)
T 1ryp_F 96 LVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERT 174 (233)
T ss_dssp HHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHH
Confidence 99999999999999999999753 579999999999998 799999999999999999999999999999999999
Q ss_pred cCC--CC--CHHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEEcCCCeEEEeecCCCCchhh
Q 026587 158 WKE--GM--TKEEAEQLVVKAVSLAIARD-GASGGVVRTVTINSEGVSRKFYPGDTLPLWH 213 (236)
Q Consensus 158 ~~~--~~--s~~eai~l~~~~l~~~~~~d-~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l 213 (236)
|++ +| |++||++++++||..+. +| ..++++++|++|++++. ++.++++||++++
T Consensus 175 ~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~-~~~l~~~ei~~~l 233 (233)
T 1ryp_F 175 LDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTP-FTIYDGEAVAKYI 233 (233)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEE-EEEEEGGGGGGGC
T ss_pred hccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 998 99 99999999999999999 77 57899999999999954 3469999999875
No 31
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=3e-48 Score=328.97 Aligned_cols=215 Identities=20% Similarity=0.279 Sum_probs=199.5
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.+||.+++++|+|+|||+++||||||+|+|.+.+.. .+++.+||++|+++++++++|..+|++.+.++++.+++.|+
T Consensus 22 ~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~-~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 100 (246)
T 1j2p_A 22 FQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLL-EKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINR 100 (246)
T ss_dssp HHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTB-CGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCcccc-ccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999865 47888999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+|+++++++|.+ .|||++++|||||| +||+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 101 ~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 178 (246)
T 1j2p_A 101 LTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKE 178 (246)
T ss_dssp HHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHH
Confidence 99999999999999999999765 36999999999999 689999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEc-CC-CeEEEeecCCCCchhhhhccCccccc
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTIN-SE-GVSRKFYPGDTLPLWHEELEPQNSLL 223 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~-k~-g~~~~~l~~~ei~~~l~~~~~~~~~~ 223 (236)
|+++||++||++++++||..+.++ ..++++++|++|+ ++ +++ .++++|++++++.++....++
T Consensus 179 ~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~--~l~~~ei~~~~~~~~~~~~~~ 243 (246)
T 1j2p_A 179 YRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFK--EVSPEELKPYVERANERIREL 243 (246)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCE--ECCHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceE--ECCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998 7789999999999 64 444 599999999999886554443
No 32
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=6.7e-48 Score=327.50 Aligned_cols=212 Identities=17% Similarity=0.269 Sum_probs=195.5
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHH-H
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQ-H 81 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~ 81 (236)
.|.|||++++++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||..+|++.+.++++.+++. |
T Consensus 19 ~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 97 (250)
T 1ryp_B 19 GQIDYALTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSY 97 (250)
T ss_dssp HHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999998 5667788999999999999999999999999999999999999 9
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHh
Q 026587 82 TIQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQ 156 (236)
Q Consensus 82 ~~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~ 156 (236)
++.++.+++++.+++.++++++.+ .|||++++||||||+++||+||.+||+|++.+++++|+|+|+++++++||+
T Consensus 98 ~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~ 177 (250)
T 1ryp_B 98 KRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEK 177 (250)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHH
Confidence 999999999999988888887654 279999999999997679999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCC--------------eEEEeecCCCCchhhhhc
Q 026587 157 AWKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEG--------------VSRKFYPGDTLPLWHEEL 216 (236)
Q Consensus 157 ~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g--------------~~~~~l~~~ei~~~l~~~ 216 (236)
.|+++||++||++++++||..+.+++ .++++++|++|++++ ..++.++++||+++++.+
T Consensus 178 ~~~~~ms~eea~~la~~al~~~~~~~-~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~l~~~ 250 (250)
T 1ryp_B 178 RWNDELELEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEAL 250 (250)
T ss_dssp HCCTTCCHHHHHHHHHHHHHHHCCSC-CSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHHHHHHHTTC
T ss_pred HhccCCCHHHHHHHHHHHHHHHhccc-cCCCCEEEEEEEccccccccccccccCCCCCeEECCHHHHHHHHHhC
Confidence 99999999999999999999999875 478999999999973 235679999999998754
No 33
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.5e-47 Score=324.19 Aligned_cols=205 Identities=19% Similarity=0.215 Sum_probs=191.6
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
+|.+||.+++++|+|+|||+++||||||+|+|.+++.++.+. .+||++|++|++++++|..+|++.+.++++.+++.|+
T Consensus 18 ~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 96 (244)
T 1ryp_G 18 FQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK 96 (244)
T ss_dssp HHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999887654 4999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+|+++++++|.+ .|||++++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.
T Consensus 97 ~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~ 175 (244)
T 1ryp_G 97 KLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKL 175 (244)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHh
Confidence 99999999999999999999765 379999999999997 799999999999999999999999999999999997
Q ss_pred ---cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcC---CCeEEEeecCCCCch
Q 026587 158 ---WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINS---EGVSRKFYPGDTLPL 211 (236)
Q Consensus 158 ---~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k---~g~~~~~l~~~ei~~ 211 (236)
|+++||++||++++++||..+.++|..++++++|++|++ +|.+. +.++++.+
T Consensus 176 ~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~--~~~~~~~~ 233 (244)
T 1ryp_G 176 VDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHK--FVKGDLLQ 233 (244)
T ss_dssp HHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEE--ECCTHHHH
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeee--eChHHHHH
Confidence 999999999999999999999999998999999999998 78775 55555433
No 34
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=3.3e-46 Score=308.11 Aligned_cols=198 Identities=20% Similarity=0.294 Sum_probs=186.4
Q ss_pred CCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCC
Q 026587 10 APHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPA 89 (236)
Q Consensus 10 ~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (236)
..+.+|+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.+++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (205)
T 1iru_J 3 IMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQI 82 (205)
T ss_dssp CTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred cccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 45789999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCc-CccceeeEEEEEeC-CCCcEEEEECCCCceeee-CEEEEccChhhhHHHHHhhcCCCCCHHH
Q 026587 90 TVKVAANLVRLLSYNNK-NFLQTGMIVGGWDK-YEGGKIYGVPLGGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKEE 166 (236)
Q Consensus 90 ~~~~la~~i~~~~~~~~-rp~~vs~liaG~d~-~~g~~Ly~idp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s~~e 166 (236)
+++.+|+++++.++.++ .||++++|+||||+ +++|+||.+||+|++.++ .|+|+|+|+++++++||+.|+++||++|
T Consensus 83 ~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 162 (205)
T 1iru_J 83 KPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDH 162 (205)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHH
Confidence 99999999999998765 59999999999995 479999999999999654 6799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCC
Q 026587 167 AEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGD 207 (236)
Q Consensus 167 ai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ 207 (236)
|++++++||..+.++|..++++++|++|+++|.+++.++..
T Consensus 163 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r 203 (205)
T 1iru_J 163 LFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKAR 203 (205)
T ss_dssp HHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCC
T ss_pred HHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEeecC
Confidence 99999999999999999999999999999999998776643
No 35
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=5.9e-48 Score=333.27 Aligned_cols=208 Identities=20% Similarity=0.202 Sum_probs=193.6
Q ss_pred ccccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHH
Q 026587 3 LKMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHT 82 (236)
Q Consensus 3 ~~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 82 (236)
.|.+||++++++|+|+|||+++||||||+|+|.+++.++.+ +.+|||+|++||+|+++|+.+|++.++++++.+++.|+
T Consensus 22 ~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~ 100 (288)
T 3nzj_F 22 FQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK 100 (288)
T ss_dssp HHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999988754 67999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcC-----cCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhh
Q 026587 83 IQLGQPATVKVAANLVRLLSYNN-----KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQA 157 (236)
Q Consensus 83 ~~~~~~~~~~~la~~i~~~~~~~-----~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~ 157 (236)
+.++++++++.+|+++++++|.+ .|||+|++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.
T Consensus 101 ~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~ 179 (288)
T 3nzj_F 101 KLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKL 179 (288)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHh
Confidence 99999999999999999999876 369999999999998 789999999999999999999999999999999999
Q ss_pred ---cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcC--CCeEEEeecCCCCchh
Q 026587 158 ---WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINS--EGVSRKFYPGDTLPLW 212 (236)
Q Consensus 158 ---~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k--~g~~~~~l~~~ei~~~ 212 (236)
|+++||++||++++++||..+.+++..+++.++|+||++ ++.+++.+|.+++++.
T Consensus 180 ~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~ 239 (288)
T 3nzj_F 180 VDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA 239 (288)
T ss_dssp HHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHH
Confidence 999999999999999999999999988889999999999 4545556777666643
No 36
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=5.1e-47 Score=328.28 Aligned_cols=212 Identities=22% Similarity=0.275 Sum_probs=196.4
Q ss_pred CCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCC
Q 026587 8 FNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ 87 (236)
Q Consensus 8 a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 87 (236)
|.+|+++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+++++++++|..+|++.++++++.+++.|++.+++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 88999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcC----cCccceeeEEEEEeCCCC-----cEEEEECCCCceeee--CEEEEccChhhhHHHHHh
Q 026587 88 PATVKVAANLVRLLSYNN----KNFLQTGMIVGGWDKYEG-----GKIYGVPLGGTIIEQ--PFAIGGSGSSYLYGFFDQ 156 (236)
Q Consensus 88 ~~~~~~la~~i~~~~~~~----~rp~~vs~liaG~d~~~g-----~~Ly~idp~G~~~~~--~~~aiG~g~~~~~~~Le~ 156 (236)
+++++.+++.|++++|.+ .+||++++||||||++++ |+||.+||+|++.++ +++|+|+|+++++++||+
T Consensus 138 ~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~ 217 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKK 217 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHH
Confidence 999999999999999875 379999999999998547 999999999999999 999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCc--E-----EEEEEcCCCeEEEeecCCCCchhhhhccCccc
Q 026587 157 AWKEGMTKEEAEQLVVKAVSLAIARDGASGGV--V-----RTVTINSEGVSRKFYPGDTLPLWHEELEPQNS 221 (236)
Q Consensus 157 ~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~--i-----~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~~ 221 (236)
.|+++||++||++++++||..+.++|..+++. + +|++|+++|++. ++++|++++++.++....
T Consensus 218 ~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~--l~~~ei~~~l~~i~~~~~ 287 (294)
T 1q5r_H 218 IYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH--VSEETTSELARRIVAERT 287 (294)
T ss_dssp HCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE--CCHHHHHHHHHHHCC---
T ss_pred hccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEE--cCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987654 6 999999999664 999999999999876543
No 37
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=7.2e-46 Score=305.88 Aligned_cols=197 Identities=21% Similarity=0.281 Sum_probs=185.8
Q ss_pred CCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCC
Q 026587 9 NAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQP 88 (236)
Q Consensus 9 ~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 88 (236)
.+.+.+|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+ |++++++|..+|++.+.++++.+++.|++.++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 80 (204)
T 1ryp_J 2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA 80 (204)
T ss_dssp CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 456789999999999999999999999999998888999999999 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCc-CccceeeEEEEEeC-CCCcEEEEECCCCceeee-CEEEEccChhhhHHHHHhhcCCCCCHH
Q 026587 89 ATVKVAANLVRLLSYNNK-NFLQTGMIVGGWDK-YEGGKIYGVPLGGTIIEQ-PFAIGGSGSSYLYGFFDQAWKEGMTKE 165 (236)
Q Consensus 89 ~~~~~la~~i~~~~~~~~-rp~~vs~liaG~d~-~~g~~Ly~idp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s~~ 165 (236)
++++.+|+++++.+|.++ .||++++|+||||+ +++|+||.+||+|++.++ .++|+|+|+++++++||+.|+++||++
T Consensus 81 ~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~e 160 (204)
T 1ryp_J 81 IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE 160 (204)
T ss_dssp CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHH
Confidence 999999999999998764 59999999999996 578999999999999654 779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecC
Q 026587 166 EAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPG 206 (236)
Q Consensus 166 eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~ 206 (236)
||++++++||..+.++|..++++++|++|+++|.+++.++.
T Consensus 161 ea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~ 201 (204)
T 1ryp_J 161 DLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKM 201 (204)
T ss_dssp HHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEeec
Confidence 99999999999999999999999999999999999877654
No 38
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=3.8e-46 Score=311.50 Aligned_cols=197 Identities=26% Similarity=0.415 Sum_probs=187.0
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHHH
Q 026587 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAV 175 (236)
Q Consensus 96 ~~i~~~~~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~l 175 (236)
+++++.+|.+++||++++|+||+|+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~l~~~~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al 159 (222)
T 1ryp_I 81 QMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAI 159 (222)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999998 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEEEcCCC-eEEEeecCCCCchhhhh
Q 026587 176 SLAIARDGASGGVVRTVTINSEG-VSRKFYPGDTLPLWHEE 215 (236)
Q Consensus 176 ~~~~~~d~~~~~~i~i~ii~k~g-~~~~~l~~~ei~~~l~~ 215 (236)
+.+.++|..++++++|++|+++| ++. +.+.+++.-|..
T Consensus 160 ~~~~~~d~~sg~~i~v~vi~~~g~~~~--~~~~~~~~~~~~ 198 (222)
T 1ryp_I 160 QAGIWNDLGSGSNVDVCVMEIGKDAEY--LRNYLTPNVREE 198 (222)
T ss_dssp HHHHHHCTTCCSCEEEEEEETTSCEEE--EEEEECCCCCCC
T ss_pred HHHHhccccCCCcEEEEEEECCCCEEE--EeceecCCcccc
Confidence 99999999999999999999999 664 455555555655
No 39
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=4.8e-46 Score=305.52 Aligned_cols=189 Identities=21% Similarity=0.349 Sum_probs=180.8
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 79999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCc---CccceeeEEEEEeC-CCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHH
Q 026587 96 NLVRLLSYNNK---NFLQTGMIVGGWDK-YEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLV 171 (236)
Q Consensus 96 ~~i~~~~~~~~---rp~~vs~liaG~d~-~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~ 171 (236)
+++++.+|.++ +||++++|+||||+ +++|+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++
T Consensus 82 ~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l~ 161 (198)
T 1ryp_K 82 SFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLL 161 (198)
T ss_dssp HHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 99999998863 49999999999996 479999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecC
Q 026587 172 VKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPG 206 (236)
Q Consensus 172 ~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~ 206 (236)
++||..+.++|..++++++|++|+++|++. +++
T Consensus 162 ~~al~~~~~~d~~s~~~i~v~vi~~~g~~~--~~~ 194 (198)
T 1ryp_K 162 KLCVQELEKRMPMDFKGVIVKIVDKDGIRQ--VDD 194 (198)
T ss_dssp HHHHHHHHHHCSBCCCCEEEEEEETTEEEE--ECC
T ss_pred HHHHHHHHHhCccCCCceEEEEEcCCCEEE--ecc
Confidence 999999999999999999999999999775 554
No 40
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=4.6e-47 Score=321.52 Aligned_cols=207 Identities=15% Similarity=0.206 Sum_probs=181.1
Q ss_pred ccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHH
Q 026587 5 MEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQ 84 (236)
Q Consensus 5 ~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 84 (236)
.+||.+++++|+|+|||+++||||||+|+| +++.+|||+|++||+|+++|+.+|++.|.+.++..++.|++.
T Consensus 17 ~EYA~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~ 88 (248)
T 3mi0_A 17 SELARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYA 88 (248)
T ss_dssp HHHHHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999998 246799999999999999999999999999999999999999
Q ss_pred hC-CCCCHHHHHHHHHH-HHHc---CcCccceeeEEEEEeC---CCCcEEEEECCCCceee-eCEEEEccChhhhHHHHH
Q 026587 85 LG-QPATVKVAANLVRL-LSYN---NKNFLQTGMIVGGWDK---YEGGKIYGVPLGGTIIE-QPFAIGGSGSSYLYGFFD 155 (236)
Q Consensus 85 ~~-~~~~~~~la~~i~~-~~~~---~~rp~~vs~liaG~d~---~~g~~Ly~idp~G~~~~-~~~~aiG~g~~~~~~~Le 155 (236)
++ .+++++.+++++++ +.+. ..|||+|++||||||+ ++||+||++||+|++.+ ++++|+|+|++.++++||
T Consensus 89 ~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le 168 (248)
T 3mi0_A 89 YDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALK 168 (248)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHH
Confidence 99 89999999999994 4333 4689999999999997 47999999999999995 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHH-------HhcCCCCCcEEEEEEcCCC--eEEEeecCCCCchhhhhccCcc
Q 026587 156 QAWKEGMTKEEAEQLVVKAVSLAI-------ARDGASGGVVRTVTINSEG--VSRKFYPGDTLPLWHEELEPQN 220 (236)
Q Consensus 156 ~~~~~~~s~~eai~l~~~~l~~~~-------~~d~~~~~~i~i~ii~k~g--~~~~~l~~~ei~~~l~~~~~~~ 220 (236)
+.|+++||++||++++++||..+. ++ ..++.+++|++|+++| ..++.++++||++++++++.-.
T Consensus 169 ~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~-~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~~~~ 241 (248)
T 3mi0_A 169 ESYAENASLTDALRIAVAALRAGSADTSGGDQP-TLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQESPQ 241 (248)
T ss_dssp HHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC-------
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHhhcccCccc-ccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcCCCc
Confidence 999999999999999999999999 45 4567999999999997 3456799999999999876443
No 41
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.3e-45 Score=310.50 Aligned_cols=197 Identities=28% Similarity=0.508 Sum_probs=187.4
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
||+|||+++||||||+|+|.++|.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHHHHH
Q 026587 96 NLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVVKAV 175 (236)
Q Consensus 96 ~~i~~~~~~~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~~~l 175 (236)
+++++.+|.+++||++++|+||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||
T Consensus 81 ~~l~~~l~~~~~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al 159 (234)
T 1iru_I 81 RMLKQMLFRYRGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAI 159 (234)
T ss_dssp HHHHHHHHHTTTCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHH
T ss_pred HHHHHHHHhcCCCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhh
Q 026587 176 SLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEE 215 (236)
Q Consensus 176 ~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~ 215 (236)
..+.++|..++++++|++|+++|++. +.+.+++.-|..
T Consensus 160 ~~a~~~d~~sg~~i~v~vi~k~g~~~--~~~~~~~~~~~~ 197 (234)
T 1iru_I 160 AAGIFNDLGSGSNIDLCVISKNKLDF--LRPYTVPNKKGT 197 (234)
T ss_dssp HHHHHHCTTCCSCEEEEEEETTEEEC--CSEEECCCCCCC
T ss_pred HHHHHhcccCCCCEEEEEEECCcEEE--EcceecCccccc
Confidence 99999999999999999999999774 566666666655
No 42
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=4.3e-46 Score=322.21 Aligned_cols=216 Identities=23% Similarity=0.283 Sum_probs=172.7
Q ss_pred cCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHh
Q 026587 6 EDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQL 85 (236)
Q Consensus 6 ~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 85 (236)
+||++ +++|||+|||+++||||||+|+|.++|.++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.+
T Consensus 49 ~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~ 127 (291)
T 2jay_A 49 GGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLE 127 (291)
T ss_dssp ----------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhc
Confidence 58899 99999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCc----CccceeeEEEEEeCCCC-----cEEEEECCCCcee--eeCEEEEccChhhhHHHH
Q 026587 86 GQPATVKVAANLVRLLSYNNK----NFLQTGMIVGGWDKYEG-----GKIYGVPLGGTII--EQPFAIGGSGSSYLYGFF 154 (236)
Q Consensus 86 ~~~~~~~~la~~i~~~~~~~~----rp~~vs~liaG~d~~~g-----~~Ly~idp~G~~~--~~~~~aiG~g~~~~~~~L 154 (236)
+.+++++.+++.+++++|.++ |||+|++||||||+.++ |+||.+||+|++. +++++|+|+|+++++++|
T Consensus 128 ~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~L 207 (291)
T 2jay_A 128 GVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSM 207 (291)
T ss_dssp SSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHH
Confidence 999999999999999999874 69999999999998556 9999999999998 899999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCc--E-----EEEEEcCCCeEEEeecCCCCchhhhhccCcccccc
Q 026587 155 DQAWKEGMTKEEAEQLVVKAVSLAIARDGASGGV--V-----RTVTINSEGVSRKFYPGDTLPLWHEELEPQNSLLD 224 (236)
Q Consensus 155 e~~~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~--i-----~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~~~~~~ 224 (236)
|+.|+++||.+||++++++||..+.++|..+++. + +|++|+++|+++ ++++||+++++.+.......+
T Consensus 208 e~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~--l~~~ei~~~~~~~~~~~~~~~ 282 (291)
T 2jay_A 208 KKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD--VPESRIAELARAIIESRSGAD 282 (291)
T ss_dssp HHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEE--CCHHHHHHHHHHC--------
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEE--cCHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999887654 2 699999998664 999999999999876654433
No 43
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.2e-45 Score=310.99 Aligned_cols=202 Identities=23% Similarity=0.292 Sum_probs=190.1
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
||+|||+++||||||+|+|.++|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.+|
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC----cCccceeeEEEEEeCCCC-----cEEEEECCCCceeee--CEEEEccChhhhHHHHHhhcCCCCCH
Q 026587 96 NLVRLLSYNN----KNFLQTGMIVGGWDKYEG-----GKIYGVPLGGTIIEQ--PFAIGGSGSSYLYGFFDQAWKEGMTK 164 (236)
Q Consensus 96 ~~i~~~~~~~----~rp~~vs~liaG~d~~~g-----~~Ly~idp~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~~s~ 164 (236)
+.|++++|.+ .|||++++||||||+.++ |+||.+||+|++.++ +++|+|+|+++++++||+.|+++||+
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 160 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE 160 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCH
Confidence 9999999885 479999999999998557 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCc--E-----EEEEEcCCCeEEEeecCCCCchhhhhccCc
Q 026587 165 EEAEQLVVKAVSLAIARDGASGGV--V-----RTVTINSEGVSRKFYPGDTLPLWHEELEPQ 219 (236)
Q Consensus 165 ~eai~l~~~~l~~~~~~d~~~~~~--i-----~i~ii~k~g~~~~~l~~~ei~~~l~~~~~~ 219 (236)
+||++++++||..+.++|..+++. + +|++|+++|++. ++++|++++++.++..
T Consensus 161 eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~--l~~~ei~~~~~~~~~~ 220 (235)
T 1q5q_H 161 ETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH--VSEETTSELARRIVAE 220 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEE--eCHHHHHHHHHHHHHH
Confidence 999999999999999999887753 2 999999999664 9999999999988654
No 44
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=6.5e-45 Score=299.53 Aligned_cols=186 Identities=18% Similarity=0.296 Sum_probs=177.3
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAA 95 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 95 (236)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++++++|..+|++.++++++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 79999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-Hc--CcCccceeeEEEEEeCCCCcEEEEECCCCceeeeCEEEEccChhhhHHHHHhhcCCCCCHHHHHHHHH
Q 026587 96 NLVRLLS-YN--NKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKEEAEQLVV 172 (236)
Q Consensus 96 ~~i~~~~-~~--~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~~eai~l~~ 172 (236)
+++++.+ +. .++||++++|+||||+++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++++
T Consensus 82 ~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~ 161 (201)
T 1iru_K 82 NFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLR 161 (201)
T ss_dssp HHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 9998754 33 23699999999999976799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 173 KAVSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 173 ~~l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
+||+.+.+||..++++++|++|+++|+++
T Consensus 162 ~al~~a~~rd~~sg~~i~v~vi~~~g~~~ 190 (201)
T 1iru_K 162 KCLEELQKRFILNLPTFSVRIIDKNGIHD 190 (201)
T ss_dssp HHHHHHHHTBCBCCCCEEEEEEETTEEEC
T ss_pred HHHHHHHhhccccCCceEEEEEcCCCeEE
Confidence 99999999999999999999999999885
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=6.3e-46 Score=316.79 Aligned_cols=210 Identities=14% Similarity=0.181 Sum_probs=184.8
Q ss_pred cccCCCCCccccceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEecCeEEEEecCChHHHHHHHHHHHHHHHHHHH
Q 026587 4 KMEDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTI 83 (236)
Q Consensus 4 ~~~~a~~~v~~gtt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 83 (236)
|.+||++++++|+|+|||+++||||||+|+| +++.+|||+|++||+++++|..+|++.+.++++.+++.|++
T Consensus 16 qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 87 (259)
T 1q5q_A 16 RSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGY 87 (259)
T ss_dssp HHHHHHHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999998 25679999999999999999999999999999999999999
Q ss_pred HhC-CCCCHHHHHHHHHHH-H--Hc-CcCccceeeEEEEEe--C-CCCcEEEEECCCCcee-eeCEEEEccChhhhHHHH
Q 026587 84 QLG-QPATVKVAANLVRLL-S--YN-NKNFLQTGMIVGGWD--K-YEGGKIYGVPLGGTII-EQPFAIGGSGSSYLYGFF 154 (236)
Q Consensus 84 ~~~-~~~~~~~la~~i~~~-~--~~-~~rp~~vs~liaG~d--~-~~g~~Ly~idp~G~~~-~~~~~aiG~g~~~~~~~L 154 (236)
.++ ++++++.+|+++++. . +. ..|||+|++|||||| + .+||+||.+||+|++. +++++|+|+|++.++++|
T Consensus 88 ~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~L 167 (259)
T 1q5q_A 88 SYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAM 167 (259)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHH
T ss_pred HcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHH
Confidence 988 499999999999994 2 32 358999999999999 2 4899999999999999 789999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHHHH-----HhcCCCCCcEEEEEEcCCCe--EEEeecCCCCchhhhhccCcccc
Q 026587 155 DQAWKEGMTKEEAEQLVVKAVSLAI-----ARDGASGGVVRTVTINSEGV--SRKFYPGDTLPLWHEELEPQNSL 222 (236)
Q Consensus 155 e~~~~~~~s~~eai~l~~~~l~~~~-----~~d~~~~~~i~i~ii~k~g~--~~~~l~~~ei~~~l~~~~~~~~~ 222 (236)
|+.|+++||++||++++++||..+. ++|. ++++++|++|+++|. .++.++++||+.++..++.....
T Consensus 168 e~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~~~~~~~~ 241 (259)
T 1q5q_A 168 RESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAEPAAASE 241 (259)
T ss_dssp HHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHHTTSCCC------
T ss_pred HhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999998 8888 889999999999951 23459999999999988755433
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=1.5e-36 Score=245.69 Aligned_cols=169 Identities=21% Similarity=0.166 Sum_probs=150.9
Q ss_pred ccccceEEEEEeCCEEEEeEeCccccCce-eecCCCCceEEe-cCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCC
Q 026587 12 HSMGTTIIGVTYNGGVVLGADSRTSTGVY-VANRASDKITQL-TDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPA 89 (236)
Q Consensus 12 v~~gtt~vgi~~~dgvvlaad~~~~~~~~-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 89 (236)
..+|+|+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+ | .
T Consensus 2 ~~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~ 76 (180)
T 2z3b_A 2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--N 76 (180)
T ss_dssp CBCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--C
T ss_pred CCCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--C
Confidence 36899999999999999999999999877 889999999999 999999999999999999999999999987 3 2
Q ss_pred CHHHHHHHHHHHHHc--CcCccceeeEEEEEeCCCCcEEEEECCCCceee--eCEEEEccChhhhHHHHHhhcCC---CC
Q 026587 90 TVKVAANLVRLLSYN--NKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIE--QPFAIGGSGSSYLYGFFDQAWKE---GM 162 (236)
Q Consensus 90 ~~~~la~~i~~~~~~--~~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~--~~~~aiG~g~~~~~~~Le~~~~~---~~ 162 (236)
.++..+ .+++.+++ +.|||++++|+| | +|+||.+||+|++.+ ++++|+|+|+++++++||+.|++ +|
T Consensus 77 ~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~m 150 (180)
T 2z3b_A 77 LKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESM 150 (180)
T ss_dssp HHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGC
T ss_pred hHHHHH-HHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCC
Confidence 233333 34555544 358999999999 4 699999999999998 59999999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Q 026587 163 TKEEAEQLVVKAVSLAIARDGASGGVVRTVTI 194 (236)
Q Consensus 163 s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii 194 (236)
|.+| ++++||+.+.+||..++++++|++|
T Consensus 151 t~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 151 SASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp CHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 9999 4679999999999999999999998
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=9.4e-36 Score=239.02 Aligned_cols=165 Identities=24% Similarity=0.260 Sum_probs=149.1
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEe-cCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQL-TDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (236)
||+|||+++||||||+|+|.+.|.++.+++.+|||+| ++|++++++|..+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999988889999999999 99999999999999999999999999998744 26666
Q ss_pred HHHHHHHHHcC--cCccceeeEEEEEeCCCCcEEEEECCCCceeeeC--EEEEccChhhhHHHHHhhcC-CCCCHHHHHH
Q 026587 95 ANLVRLLSYNN--KNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQP--FAIGGSGSSYLYGFFDQAWK-EGMTKEEAEQ 169 (236)
Q Consensus 95 a~~i~~~~~~~--~rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~--~~aiG~g~~~~~~~Le~~~~-~~~s~~eai~ 169 (236)
++..+ .++++ .|||++++|++ | ||+||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++||. ++
T Consensus 76 ~~l~~-~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~ 146 (171)
T 1m4y_A 76 VELAK-DWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---RE 146 (171)
T ss_dssp HHHHH-HHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HH
T ss_pred HHHHH-HHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HH
Confidence 66654 45544 36799999988 5 79999999999999987 99999999999999999999 99996 67
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEEEE
Q 026587 170 LVVKAVSLAIARDGASGGVVRTVTI 194 (236)
Q Consensus 170 l~~~~l~~~~~~d~~~~~~i~i~ii 194 (236)
++++||+.+.+||..++++++|+++
T Consensus 147 l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 147 IVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred HHHHHHHHHHHhCcccCCeEEEEEC
Confidence 8999999999999999999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2e-35 Score=237.82 Aligned_cols=166 Identities=20% Similarity=0.169 Sum_probs=149.7
Q ss_pred ceEEEEEeCCEEEEeEeCccccCceeecCCCCceEEe-cCeEEEEecCChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026587 16 TTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQL-TDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVA 94 (236)
Q Consensus 16 tt~vgi~~~dgvvlaad~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 94 (236)
||+|||+++||||||+|+|.+.|.++.+++.+|||+| ++|++++++|..+|++.+.++++.+++.|++ +....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999988889999999999 9999999999999999999999999999875 44555
Q ss_pred HHHHHHHHHcCc--CccceeeEEEEEeCCCCcEEEEECCCCceeeeC---EEEEccChhhhHHHHHhhcC-CCCCHHHHH
Q 026587 95 ANLVRLLSYNNK--NFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQP---FAIGGSGSSYLYGFFDQAWK-EGMTKEEAE 168 (236)
Q Consensus 95 a~~i~~~~~~~~--rp~~vs~liaG~d~~~g~~Ly~idp~G~~~~~~---~~aiG~g~~~~~~~Le~~~~-~~~s~~eai 168 (236)
+..+++.+++++ ||+ +.+++|+| +|+||.+||+|++.+++ ++|+|+|+++++++||+.|+ ++||.+
T Consensus 75 ~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~--- 146 (174)
T 1g3k_A 75 AVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH--- 146 (174)
T ss_dssp HHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH---
T ss_pred HHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH---
Confidence 566677666653 464 57778887 69999999999999988 99999999999999999999 999955
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEEc
Q 026587 169 QLVVKAVSLAIARDGASGGVVRTVTIN 195 (236)
Q Consensus 169 ~l~~~~l~~~~~~d~~~~~~i~i~ii~ 195 (236)
+++++||+.+.+||..++++++|++|+
T Consensus 147 ~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred HHHHHHHHHHHHhccccCCceEEEEec
Confidence 799999999999999999999999985
No 49
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=34.65 E-value=18 Score=23.70 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=23.9
Q ss_pred CCcEEEEEEcCCCeEEEeecCCCCchhhhh
Q 026587 186 GGVVRTVTINSEGVSRKFYPGDTLPLWHEE 215 (236)
Q Consensus 186 ~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~ 215 (236)
.+..++..+++.|.++| +..||..||..
T Consensus 30 ~~k~DvyY~sP~Gkr~R--S~~ev~~YL~~ 57 (72)
T 2ky8_A 30 AGKSDVYYFSPSGKKFR--SKPQLARYLGN 57 (72)
T ss_dssp TTCEEEEEECTTCCEEE--SHHHHHHHHTT
T ss_pred CCceEEEEECCCCCEeE--cHHHHHHHHhc
Confidence 46799999999999985 77889999866
No 50
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=30.47 E-value=84 Score=24.62 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 159 KEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 159 ~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
.+.+|+++|.+++..++..+.++ +.++-|.|++..|...
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G~ll 100 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNGNTL 100 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCCCEE
Confidence 36799999999999999999976 3588999999888764
No 51
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=29.19 E-value=27 Score=24.30 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=24.8
Q ss_pred CCCcEEEEEEcCCCeEEEeecCCCCchhhhhc
Q 026587 185 SGGVVRTVTINSEGVSRKFYPGDTLPLWHEEL 216 (236)
Q Consensus 185 ~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~ 216 (236)
+.+..+++.++++|.++| +..||..||+.-
T Consensus 40 s~gk~DvYY~sP~GkkfR--Sk~ev~ryL~~~ 69 (97)
T 3c2i_A 40 SAGKYDVYLINPQGKAFR--SKVELIMYFEKV 69 (97)
T ss_dssp TTTCEEEEEECTTSCEEC--SHHHHHHHHHHH
T ss_pred CCCcceEEEECCCCCEEE--CHHHHHHHHHHC
Confidence 346799999999999984 778899998754
No 52
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=28.53 E-value=22 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCeEEEeecCCCCchhhh
Q 026587 187 GVVRTVTINSEGVSRKFYPGDTLPLWHE 214 (236)
Q Consensus 187 ~~i~i~ii~k~g~~~~~l~~~ei~~~l~ 214 (236)
+..++..++++|.++| +..||..||.
T Consensus 29 gk~DvyY~sP~Gkk~R--S~~ev~ryL~ 54 (75)
T 1d9n_A 29 GRSDTYYQSPTGDRIR--SKVELTRYLG 54 (75)
T ss_dssp CCCCEEEECSSSCEEC--STHHHHHHHC
T ss_pred CceEEEEECCCCCeee--cHHHHHHHhc
Confidence 6789999999999984 7888999985
No 53
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=27.96 E-value=56 Score=24.22 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEE
Q 026587 160 EGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSR 201 (236)
Q Consensus 160 ~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~ 201 (236)
+.+|.++|.+++..+...+.++ +.++-|.|++..|...
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ll 47 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNTL 47 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCEE
Confidence 4589999999999999999875 4589999999888764
No 54
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=24.66 E-value=38 Score=21.90 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=25.1
Q ss_pred CCcEEEEEEcCCCeEEEeecCCCCchhhhhccC
Q 026587 186 GGVVRTVTINSEGVSRKFYPGDTLPLWHEELEP 218 (236)
Q Consensus 186 ~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~~ 218 (236)
.+..++..+++.|.++| +..||..||..-..
T Consensus 23 ~gk~DvyY~sP~Gkk~R--Sk~ev~~yL~~~~~ 53 (69)
T 3vxv_A 23 AGKFDVYFISPQGLKFR--SKRSLANYLLKNGE 53 (69)
T ss_dssp TTCEEEEEECTTSCEEC--SHHHHHHHHHHHCC
T ss_pred CCcceEEEEcCCCCEee--CHHHHHHHHHhCCC
Confidence 35789999999999985 67788888877543
No 55
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=20.16 E-value=50 Score=22.49 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=39.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcCCCeEEEeecCCCCchhhhhcc
Q 026587 158 WKEGMTKEEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVSRKFYPGDTLPLWHEELE 217 (236)
Q Consensus 158 ~~~~~s~~eai~l~~~~l~~~~~~d~~~~~~i~i~ii~k~g~~~~~l~~~ei~~~l~~~~ 217 (236)
..++++.++..+...+.++. ..+.++.+.+++.+|-...+.++.|++..++-.+
T Consensus 22 v~~~i~~~~L~~kv~~~~~~------~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 22 FEPSISFEGLCNEVRDMCSF------DNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp ECTTCCHHHHHHHHHHHTTC------CSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCC------CCCCeEEEEEECCCCCcccccCHHHHHHHHHHHH
Confidence 34678888887765553331 2357899999999988776778888888887555
Done!