Query 026588
Match_columns 236
No_of_seqs 143 out of 1107
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:09:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_B 40S ribosomal protein S 100.0 2.4E-77 8.2E-82 525.2 5.9 225 1-225 1-225 (227)
2 3u5c_D RP13, YS3, 40S ribosoma 100.0 4.5E-75 1.5E-79 513.6 17.7 222 1-225 1-223 (240)
3 2zkq_c 40S ribosomal protein S 100.0 5.9E-75 2E-79 514.2 10.1 222 1-222 1-222 (243)
4 2xzm_C KH domain containing pr 100.0 6.3E-72 2.2E-76 495.0 17.6 220 4-223 7-228 (243)
5 3j20_C 30S ribosomal protein S 100.0 1.5E-64 5.1E-69 440.0 13.7 199 5-217 1-202 (210)
6 2vqe_C 30S ribosomal protein S 100.0 3.8E-62 1.3E-66 432.0 14.8 195 6-206 17-221 (239)
7 3i1m_C 30S ribosomal protein S 100.0 1.4E-62 4.9E-67 433.1 11.5 195 6-216 17-220 (233)
8 3r8n_C 30S ribosomal protein S 100.0 2.1E-62 7.2E-67 425.6 10.8 181 6-192 16-205 (206)
9 3bbn_C Ribosomal protein S3; s 100.0 3.8E-61 1.3E-65 420.9 10.6 184 6-192 17-217 (218)
10 1wh9_A 40S ribosomal protein S 99.9 4.9E-23 1.7E-27 158.1 7.8 87 13-99 4-90 (92)
11 2pt7_G HP1451, hypothetical pr 96.4 0.0054 1.8E-07 50.5 6.2 61 18-78 4-67 (152)
12 3gku_A Probable RNA-binding pr 93.4 0.14 4.8E-06 44.6 6.3 93 18-111 63-163 (225)
13 1zzk_A Heterogeneous nuclear r 63.7 3.6 0.00012 29.3 2.1 29 45-73 8-36 (82)
14 2cxc_A NUSA; transcription ter 63.2 6 0.0002 31.9 3.6 58 21-78 78-137 (144)
15 2opv_A KHSRP protein; KH domai 62.2 2.1 7.3E-05 30.7 0.7 29 45-73 15-43 (85)
16 1dtj_A RNA-binding neurooncolo 62.1 2.8 9.7E-05 29.1 1.3 27 46-72 5-31 (76)
17 2hh2_A KH-type splicing regula 59.6 5.3 0.00018 30.0 2.5 28 45-72 8-35 (107)
18 1we8_A Tudor and KH domain con 59.4 2.6 8.9E-05 31.5 0.7 30 44-73 15-44 (104)
19 2axy_A Poly(RC)-binding protei 58.8 2.4 8.1E-05 29.7 0.4 28 45-72 6-33 (73)
20 1ec6_A RNA-binding protein NOV 58.7 8.4 0.00029 27.5 3.4 29 45-73 4-32 (87)
21 1wvn_A Poly(RC)-binding protei 57.8 3.5 0.00012 29.3 1.1 27 46-72 8-34 (82)
22 3iev_A GTP-binding protein ERA 57.1 11 0.00036 32.9 4.4 46 45-93 239-292 (308)
23 2p2r_A Poly(RC)-binding protei 55.4 2.9 0.0001 29.2 0.4 27 46-72 7-33 (76)
24 1x4m_A FAR upstream element bi 55.0 3 0.0001 30.6 0.4 29 46-74 17-45 (94)
25 1vig_A Vigilin; RNA-binding pr 53.9 3.9 0.00013 28.5 0.8 27 46-72 7-33 (71)
26 1x4n_A FAR upstream element bi 50.0 4.1 0.00014 29.7 0.5 28 45-72 16-43 (92)
27 1j5k_A Heterogeneous nuclear r 49.9 4 0.00014 29.5 0.4 27 46-72 16-42 (89)
28 3krm_A Insulin-like growth fac 49.8 5.3 0.00018 31.4 1.1 31 44-74 3-33 (163)
29 1wf3_A GTP-binding protein; GT 49.4 14 0.00048 32.2 3.9 46 45-93 229-282 (301)
30 2hh3_A KH-type splicing regula 49.0 18 0.00061 27.2 4.0 31 43-73 10-40 (106)
31 1ega_A Protein (GTP-binding pr 47.8 47 0.0016 28.6 7.1 70 21-93 198-283 (301)
32 2dgr_A Ring finger and KH doma 46.4 3.7 0.00013 29.8 -0.3 26 47-72 13-38 (83)
33 2cxc_A NUSA; transcription ter 45.7 18 0.0006 29.1 3.6 53 21-73 11-65 (144)
34 2ctl_A Vigilin; K homology typ 45.0 7.1 0.00024 28.9 1.1 30 45-74 18-47 (97)
35 2cte_A Vigilin; K homology typ 43.7 5.6 0.00019 29.2 0.3 33 46-78 19-51 (94)
36 2ctk_A Vigilin; K homology typ 39.6 4.9 0.00017 30.2 -0.6 30 43-72 16-45 (104)
37 2ctm_A Vigilin; K homology typ 37.1 8.2 0.00028 28.5 0.3 30 45-74 18-47 (95)
38 2anr_A Neuro-oncological ventr 34.9 10 0.00035 30.3 0.6 30 45-74 7-36 (178)
39 2jzx_A Poly(RC)-binding protei 34.0 8.3 0.00028 30.2 -0.1 30 45-74 6-35 (160)
40 2jvf_A De novo protein M7; tet 33.0 1.4E+02 0.0048 21.7 7.3 42 37-88 10-54 (96)
41 2jvz_A KH type-splicing, FAR u 32.8 12 0.0004 29.2 0.6 27 46-72 4-30 (164)
42 3elg_A Uncharacterized peripla 32.1 61 0.0021 24.9 4.7 26 17-42 13-38 (128)
43 2ycb_A Beta-CAsp RNAse, cleava 31.5 28 0.00097 33.6 3.2 53 19-76 7-60 (636)
44 3af5_A Putative uncharacterize 31.3 27 0.00094 33.8 3.1 53 19-76 16-69 (651)
45 2anr_A Neuro-oncological ventr 30.9 12 0.00041 29.8 0.4 28 45-72 105-132 (178)
46 1j4w_A FUSE binding protein; s 29.6 17 0.00059 28.8 1.1 28 45-72 105-132 (174)
47 3m20_A 4-oxalocrotonate tautom 28.9 42 0.0014 22.0 2.8 31 62-92 15-45 (62)
48 3krm_A Insulin-like growth fac 28.8 19 0.00067 28.1 1.3 28 46-73 87-114 (163)
49 2ycb_A Beta-CAsp RNAse, cleava 28.6 41 0.0014 32.5 3.7 75 20-107 75-150 (636)
50 1j4w_A FUSE binding protein; s 27.9 16 0.00054 29.1 0.6 29 45-73 4-32 (174)
51 3af5_A Putative uncharacterize 27.7 48 0.0016 32.1 4.1 49 21-71 85-134 (651)
52 2xr1_A Cleavage and polyadenyl 27.4 43 0.0015 32.4 3.7 75 20-107 79-154 (640)
53 2jzx_A Poly(RC)-binding protei 27.2 15 0.00051 28.7 0.3 31 44-74 89-119 (160)
54 2xr1_A Cleavage and polyadenyl 26.4 26 0.00089 33.9 2.0 53 19-76 11-64 (640)
55 2jvz_A KH type-splicing, FAR u 24.4 16 0.00053 28.5 -0.1 27 46-72 93-119 (164)
56 2ctf_A Vigilin; K homology typ 23.4 20 0.00068 26.8 0.4 25 48-72 31-55 (102)
57 2qnd_A FMR1 protein; KH domain 22.2 29 0.00099 27.2 1.1 27 46-72 69-95 (144)
58 1iv3_A 2-C-methyl-D-erythritol 21.9 1.7E+02 0.006 23.6 5.8 49 28-88 83-131 (152)
59 3m21_A Probable tautomerase HP 21.9 95 0.0033 20.4 3.6 32 62-93 19-50 (67)
60 2aal_A Malonate semialdehyde d 20.8 89 0.0031 23.4 3.7 51 41-93 62-112 (131)
61 3h90_A Ferrous-iron efflux pum 20.8 2.9E+02 0.01 23.2 7.4 69 19-89 209-278 (283)
62 2pmp_A 2-C-methyl-D-erythritol 20.3 1.9E+02 0.0066 23.6 5.8 49 28-88 86-134 (160)
63 1t0a_A 2C-methyl-D-erythritol 20.1 2E+02 0.0067 23.5 5.8 49 28-88 85-133 (159)
No 1
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.4e-77 Score=525.21 Aligned_cols=225 Identities=91% Similarity=1.343 Sum_probs=205.7
Q ss_pred CccccCceeeEEecCcChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q 026588 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (236)
Q Consensus 1 ~~~~~~~~s~w~a~~~~~~~Ire~i~k~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~ 80 (236)
|+.+|+.+++|++|+.++++||+||.++|.++|||+|+|+|++++++|+||+++||++||++|+++++|++.|++.|+++
T Consensus 1 ~~~~~~~~rkfv~dg~~~a~Ire~l~k~l~~agis~IeI~R~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~l~k~~~~~ 80 (227)
T 3iz6_B 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFL 80 (227)
T ss_dssp -----------CHHHHHHHHHHHHHHHHTSSCSSCCEECCEETTEECCEEECTTHHHHHCSSSSHHHHHHHHHHHHHCCC
T ss_pred CccchhhhhhhhhcCeehHHHHHHHHHHHHhCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeeEEEEEEecCCCcChHHHHHHHHHHHhCCchhHhHHHHHHHHHHhcCCceeEEEEccccccceeeeeeeecCeeeec
Q 026588 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSS 160 (236)
Q Consensus 81 ~~~i~I~v~~i~~p~~~a~~iA~~Ia~qLekr~~fRr~~k~~i~~~m~~gakGikI~iSGRL~G~rARte~~~~G~vl~t 160 (236)
++++.|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+|||+|||++|+|+||
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRrA~k~ai~~~m~aGakGikI~iSGRL~GaiARtE~~~eG~vlhT 160 (227)
T 3iz6_B 81 ENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS 160 (227)
T ss_dssp SCCCCCEEECCSSSTTSCSHHHHHHHTTTTTCCCHHHHHHHHHHTTTTTCCSEEECCBCSCGGGSSCCCBCCEEECCCSS
T ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCceEEEEEecccCCceeeEeeeeCCeeccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccceeEEEEEEecCCeeeeEEEEEEcCCCCCCCCCCCCCCCCeEEEeCCCCccccccCcce
Q 026588 161 GQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLV 225 (236)
Q Consensus 161 G~~~~~~Idya~~~a~Tk~GviGIKVWI~~~~~p~g~~g~~~~~pd~i~i~~~~~~~~~~~~~~~ 225 (236)
||+++++||||+++|+|+||+||||||||+++||+|++||.++|||+|+|++|+++.+...|.++
T Consensus 161 lqtlra~IDya~~~a~T~yGviGVKVWI~~~~dp~g~~g~~~~lpD~v~i~~pk~~~~~~~~~~~ 225 (227)
T 3iz6_B 161 GQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEENELRPPALV 225 (227)
T ss_dssp SSCTTSCEEECCCCCBCSSSBCCCCCEEECSCTTSCCCCCSSCCCCCCSCCCCSSCCCC------
T ss_pred CChhhheeeEEEEEEEcCCeeEEEEEEEECCCCcccccCCCCCCCCeEEEeCCCcccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999998776777653
No 2
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=100.00 E-value=4.5e-75 Score=513.60 Aligned_cols=222 Identities=69% Similarity=1.113 Sum_probs=214.8
Q ss_pred CccccCceeeEEecCcChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q 026588 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (236)
Q Consensus 1 ~~~~~~~~s~w~a~~~~~~~Ire~i~k~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~ 80 (236)
|+.+|+.+++||+++.++++||+||.++|.++|||+|+|+|++++++|+||+++||+|||++|+++++|++.|+++|+++
T Consensus 1 ~~~~~~~~~k~vadg~~~~~ire~l~k~l~~agis~IeI~Rt~~~i~I~I~t~rPg~VIGkkG~~I~~L~~~l~k~~~~~ 80 (240)
T 3u5c_D 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYA 80 (240)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSSCEEEEEEESCHHHHHTTTTCTHHHHHHHHHHHHTCC
T ss_pred CcccccccceEeecCchHHHHHHHHHHHHHhCCcceEEEEEcCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeeEEEEEEecCCCcChHHHHHHHHHHHhCCchhHhHHHHHHHHHHhcCCceeEEEEccccccceeeeeeeecCeeeec
Q 026588 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSS 160 (236)
Q Consensus 81 ~~~i~I~v~~i~~p~~~a~~iA~~Ia~qLekr~~fRr~~k~~i~~~m~~gakGikI~iSGRL~G~rARte~~~~G~vl~t 160 (236)
++++.|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+|||+|||++|+||||
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRA~k~ai~~am~aGakGikI~iSGRL~Ga~ARtE~~~eG~vlhT 160 (240)
T 3u5c_D 81 PGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHS 160 (240)
T ss_dssp TTSSEEEEECCSCGGGCHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHTTCSEEEEEEEECSSSSSCEEEEEEEECCCCS
T ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCceeEEEEecccCCceeeEEeeecCeeccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccceeEEEEEEecCCeeeeEEEEEEcCCCCC-CCCCCCCCCCCeEEEeCCCCccccccCcce
Q 026588 161 GQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPN-GKQGPTTPLPDLVTIHSPKDEEEYVKPTLV 225 (236)
Q Consensus 161 G~~~~~~Idya~~~a~Tk~GviGIKVWI~~~~~p~-g~~g~~~~~pd~i~i~~~~~~~~~~~~~~~ 225 (236)
||+++++||||+++|+|+||+||||||||+ ||+ |++|| .+|||+|+|++|+++..+..|.-+
T Consensus 161 gqtlra~IDYa~~~a~T~yGviGVKVWI~~--dp~~g~~g~-~~lpD~v~i~epk~~~~~~~~~~~ 223 (240)
T 3u5c_D 161 GQPVNDFIDTATRHVLMRQGVLGIKVKIMR--DPAKSRTGP-KALPDAVTIIEPKEEEPILAPSVK 223 (240)
T ss_dssp SHHHHHHEEEEEEEEECSSCEEEEEEEEEC--CGGGCSSSC-SSCTTCCEECCCCCCCCCCCCCEE
T ss_pred CChhhheeeEEEEEEEcCCeeEEEEEEEEe--CcccccCCC-CCCCCeEEEECCccccCCCCCccc
Confidence 999999999999999999999999999999 999 99999 999999999999999776666543
No 3
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.9e-75 Score=514.20 Aligned_cols=222 Identities=84% Similarity=1.242 Sum_probs=189.9
Q ss_pred CccccCceeeEEecCcChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q 026588 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (236)
Q Consensus 1 ~~~~~~~~s~w~a~~~~~~~Ire~i~k~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~ 80 (236)
|+.+|+.+++|++|+.++.+||+||.++|.++|||+|+|+|++++++|+||+++||++||++|+++++|++.|+++|++.
T Consensus 1 ~~~~~~~~rkfv~dgv~~~~IR~~l~k~l~~agis~IeIeRt~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~ 80 (243)
T 2zkq_c 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFP 80 (243)
T ss_dssp -CBCCCCTTTHHHHHHHHHHHHHHHHHHTCTTTEEEEECBEETTEECCEEEESCHHHHHCGGGHHHHHHHHHHHHHSCTT
T ss_pred CCcchhhhhHHHhcChHHHHHHHHHHHHHHHCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchHHHHHHHHHHHHhCcC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCeeEEEEEEecCCCcChHHHHHHHHHHHhCCchhHhHHHHHHHHHHhcCCceeEEEEccccccceeeeeeeecCeeeec
Q 026588 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSS 160 (236)
Q Consensus 81 ~~~i~I~v~~i~~p~~~a~~iA~~Ia~qLekr~~fRr~~k~~i~~~m~~gakGikI~iSGRL~G~rARte~~~~G~vl~t 160 (236)
+++++|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+|||+|||++|+||||
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRa~k~ai~~am~aGakGikI~iSGRL~GaiARtE~~~eG~vLhT 160 (243)
T 2zkq_c 81 EGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 160 (243)
T ss_dssp TCCCCCEEEECSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSSCSEEEEEECSSGGGSSCCCBCCEEESSHHH
T ss_pred CceEEEEEEEecCcccCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCceEEEEEecchhhHhhhhhhhcCcEEeec
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccceeEEEEEEecCCeeeeEEEEEEcCCCCCCCCCCCCCCCCeEEEeCCCCccccccC
Q 026588 161 GQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKP 222 (236)
Q Consensus 161 G~~~~~~Idya~~~a~Tk~GviGIKVWI~~~~~p~g~~g~~~~~pd~i~i~~~~~~~~~~~~ 222 (236)
|+|++++||||+++|+|+||+||||||||+++||+|++||+++|||+|+|++|+++.....|
T Consensus 161 g~plra~IDYa~~~a~T~yGvlGVKVWI~~~~dp~g~~gp~~~lpD~v~i~e~k~~~~~~~~ 222 (243)
T 2zkq_c 161 GDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222 (243)
T ss_dssp HSSTTCCEEEEEECCCCSSCCCCEEEEEECCCC-----------------------------
T ss_pred CchhhhceeEEEEEEEcCCceEEEEEEEecCCCcCCcCCCCCCCCCeEEEeCCccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999998554444
No 4
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=100.00 E-value=6.3e-72 Score=495.03 Aligned_cols=220 Identities=50% Similarity=0.903 Sum_probs=213.8
Q ss_pred ccCceeeEEecCcChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCe
Q 026588 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENS 83 (236)
Q Consensus 4 ~~~~~s~w~a~~~~~~~Ire~i~k~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~~~~ 83 (236)
+|+.+++||+++..+++||+||.++|.++|||+|+|+|++++++|+||+++||++||++|+++++|++.|++.|++.+++
T Consensus 7 ~~~~~kkfv~~~l~ed~Ir~~l~~~l~~agis~IeI~r~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~~~~ 86 (243)
T 2xzm_C 7 AINKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQFLQKRFGYSDDQ 86 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHCCSSCEEEECCEECSSCEEEEEEESCHHHHHCSSSHHHHHHHHHHHHHHCCTTTT
T ss_pred hhhhHHHHHHhHhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEcCCCceEECCCchHHHHHHHHHHHHhCcCCce
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999887789
Q ss_pred eEEEEEEecCCCcChHHHHHHHHHHHhCCchhHhHHHHHHHHHHhcCCceeEEEEccccccceeeeeeeecCeeeecCcc
Q 026588 84 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQP 163 (236)
Q Consensus 84 i~I~v~~i~~p~~~a~~iA~~Ia~qLekr~~fRr~~k~~i~~~m~~gakGikI~iSGRL~G~rARte~~~~G~vl~tG~~ 163 (236)
+.|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+|||+|||++|+|||||+|
T Consensus 87 v~I~i~eV~~p~l~A~lvAe~IA~qLe~Rv~FRRA~k~ai~~am~aGakGIkI~iSGRL~GaiARtE~~~eG~vL~T~rp 166 (243)
T 2xzm_C 87 IQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQP 166 (243)
T ss_dssp SEEEEEECSCGGGCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCSEEEEEEEECTTSSSCEEEEEEEECCCCSSSH
T ss_pred EEEEEEEecCcccCHHHHHHHHHHHHHccchHHHHHHHHHHHHHhcCCceEEEEEeCCccchhheeeeeeCCeEeecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEEEEecCCeeeeEEEEEEcCCCCCCCC--CCCCCCCCeEEEeCCCCccccccCc
Q 026588 164 VNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQ--GPTTPLPDLVTIHSPKDEEEYVKPT 223 (236)
Q Consensus 164 ~~~~Idya~~~a~Tk~GviGIKVWI~~~~~p~g~~--g~~~~~pd~i~i~~~~~~~~~~~~~ 223 (236)
++++||||+++|+|+||+||||||||+++||+|.+ ||+++|||+|+|++|+++.++..+.
T Consensus 167 lra~IDYa~~~a~T~yGvlGVKVWI~~~~~~~g~~~~gp~~~lpD~v~i~e~k~~~~~~~~~ 228 (243)
T 2xzm_C 167 KNDYIDVAVRHVFFKQGIMGVKVKIMLPYEPNPAKKFGVKTPIPDNVIIHPPKQITDDKEIR 228 (243)
T ss_dssp HHHSEEEEEEEEECSSSEEEEEEEEECCCCCCTTCCSSCCSCCSSCCBCCCCCCCCCCCCCC
T ss_pred hhhheEEEEEEEEcCCceEEEEEEEecCCCcCCcccCCCCCCCCCeEEEeCCCccccccccc
Confidence 99999999999999999999999999999999999 9999999999999999997764443
No 5
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-64 Score=439.95 Aligned_cols=199 Identities=38% Similarity=0.607 Sum_probs=177.2
Q ss_pred cCceeeEEecCcChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCee
Q 026588 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSV 84 (236)
Q Consensus 5 ~~~~s~w~a~~~~~~~Ire~i~k~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~~~~i 84 (236)
|+.+++|.+++....+||+||.++|.++|||+|+|+|++++++|+||+++||++||++|+++++|++.|+++|++ +++
T Consensus 1 m~~~k~fv~~~~~d~~Ir~~l~k~l~~agis~ieI~r~~~~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~--~~v 78 (210)
T 3j20_C 1 MAIERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGL--ENP 78 (210)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCSSCCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSC--SSC
T ss_pred CcchHHHHHhhhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCC--Cce
Confidence 667888999999999999999999999999999999999999999999999999999999999999999999986 568
Q ss_pred EEEEEEecCCCcChHHHHHHHHHHHhCCchhHhHHHHHHHHHHhcCCceeEEEEccccccceeeeeeeecCee-eecCcc
Q 026588 85 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYM-VSSGQP 163 (236)
Q Consensus 85 ~I~v~~i~~p~~~a~~iA~~Ia~qLekr~~fRr~~k~~i~~~m~~gakGikI~iSGRL~G~rARte~~~~G~v-l~tG~~ 163 (236)
+|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+|||+|||++|+| |||
T Consensus 79 ~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~GakGikI~iSGRL~GeiARtE~~~eG~vpl~t--- 155 (210)
T 3j20_C 79 QIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVG--- 155 (210)
T ss_dssp EEEEEECSCTTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSEEEEEEEECTTTTSCEEEEEEEECCCCSS---
T ss_pred EEEEEEecCCccCHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCceEEEEEecccCcceeeEEeeecceeeccC---
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 888
Q ss_pred ccc--ceeEEEEEEecCCeeeeEEEEEEcCCCCCCCCCCCCCCCCeEEEeCCCCcc
Q 026588 164 VNE--YIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEE 217 (236)
Q Consensus 164 ~~~--~Idya~~~a~Tk~GviGIKVWI~~~~~p~g~~g~~~~~pd~i~i~~~~~~~ 217 (236)
+++ +||||+++|+|+||+||||||||+| +..|||+++|++|+..+
T Consensus 156 l~a~~~IDya~~~a~T~yGviGVKVwI~~~---------e~~lpd~~~i~~~~~~~ 202 (210)
T 3j20_C 156 NPAETLVSKGYAQALLKLGVIGVKVAIMPP---------GARLPDEIEIIEKPVEE 202 (210)
T ss_dssp SHHHHHSEEEEEEEECSSCEEEEEEEEECC---------C----------------
T ss_pred CcchhcEEEEEEEEEcCCcEEEEEEEEECC---------CCCCCCcEEEeCcchhh
Confidence 777 8999999999999999999999997 56799999999987664
No 6
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=100.00 E-value=3.8e-62 Score=432.01 Aligned_cols=195 Identities=27% Similarity=0.371 Sum_probs=177.2
Q ss_pred CceeeEEecCcChHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q 026588 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (236)
Q Consensus 6 ~~~s~w~a~~~~~~~-------Ire~i~k~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~ 78 (236)
+|+|.||+++++|++ ||+||.++|.++|||+|+|+|+++.++|+||+++||++||++|+++++|++.|+++|+
T Consensus 17 ~w~S~W~a~~k~y~~~l~eD~~IR~~l~k~l~~agis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~ 96 (239)
T 2vqe_C 17 DWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTG 96 (239)
T ss_dssp CCSBCCCCCTTTHHHHHHHHHHHHHHHHTTTTTTCEEEECBCBSSSCBCCEEEESCGGGTSCSSSSHHHHHHHHHHHHST
T ss_pred CcceEEeCCHhHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCeEEEEEEeCCCcceecCCchHHHHHHHHHHHHhC
Confidence 599999999999985 9999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeEEEEEEecCCCcChHHHHHHHHHHHhCCchhHhHHHHHHHHHHhcCCceeEEEEccccccc-eeeeeeeecCee
Q 026588 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKSMKFKDGYM 157 (236)
Q Consensus 79 ~~~~~i~I~v~~i~~p~~~a~~iA~~Ia~qLekr~~fRr~~k~~i~~~m~~gakGikI~iSGRL~G~-rARte~~~~G~v 157 (236)
.++.|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+ |||+|||++|+|
T Consensus 97 ---~~v~I~i~eVk~p~l~A~lvAe~Ia~qLe~rv~FRra~k~ai~~am~~gakGIkI~iSGRL~GaeiARtE~~~eG~v 173 (239)
T 2vqe_C 97 ---KNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRV 173 (239)
T ss_dssp ---TCCCCEEEECSCTTSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSSCSEEEEEECSCTTTCSSCCCBCCEEECC
T ss_pred ---CeeEEEEEEecCCCcCHHHHHHHHHHHHHccchHHHHHHHHHHHHHHcCCCceEEEEcCCcchhhhhhhhhhhcCcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred -eecCcccccceeEEEEEEecCCeeeeEEEEEEcCC-CCCCCCCCCCCCCC
Q 026588 158 -VSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSW-DPNGKQGPTTPLPD 206 (236)
Q Consensus 158 -l~tG~~~~~~Idya~~~a~Tk~GviGIKVWI~~~~-~p~g~~g~~~~~pd 206 (236)
||| ++++||||+++|+|+||+||||||||+++ -|.+..||...+|-
T Consensus 174 pL~T---lra~IDYa~~~a~T~yGviGVKVWI~~ge~l~~~~~~~~~~~~~ 221 (239)
T 2vqe_C 174 PLHT---LRANIDYGFALARTTYGVLGVKAYIFLGEVIGGQKPKARPELPK 221 (239)
T ss_dssp CTTC---GGGCEEEEEECCBCSSCBCCEEEEEECCCC--------------
T ss_pred ccCC---ccceeEEEEEEEEcCCeeEEEEEEEEcCCcCCCcCCCCCCCCcc
Confidence 999 99999999999999999999999999997 46666666665553
No 7
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=100.00 E-value=1.4e-62 Score=433.08 Aligned_cols=195 Identities=25% Similarity=0.344 Sum_probs=177.0
Q ss_pred CceeeEEecCcChHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q 026588 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (236)
Q Consensus 6 ~~~s~w~a~~~~~~~-------Ire~i~k~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~ 78 (236)
+|+|+||+++++|++ ||+||.++|.++|||+|+|+|+++.++|+||+++||++||++|+++++|++.|++.|+
T Consensus 17 ~w~S~W~a~~k~y~~~l~eD~kIr~~l~k~l~~agis~IeI~R~~~~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~ 96 (233)
T 3i1m_C 17 PWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 96 (233)
T ss_dssp CCSBCCCCCHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEBCCCSSCBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHT
T ss_pred CceeEEecCcchhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHC
Confidence 599999999888885 9999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeEEEEEEecCCCcChHHHHHHHHHHHhCCchhHhHHHHHHHHHHhcCCceeEEEEccccccc-eeeeeeeecCee
Q 026588 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKSMKFKDGYM 157 (236)
Q Consensus 79 ~~~~~i~I~v~~i~~p~~~a~~iA~~Ia~qLekr~~fRr~~k~~i~~~m~~gakGikI~iSGRL~G~-rARte~~~~G~v 157 (236)
.++.|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+ |||+|||++|+|
T Consensus 97 ---~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRramk~ai~~am~aGakGikI~iSGRL~GaeiARtE~~~eG~v 173 (233)
T 3i1m_C 97 ---VPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRV 173 (233)
T ss_dssp ---SCBCCEEEECSSGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEEEEEESSTTSCSSCCCCBCCEECC
T ss_pred ---CceEEEEEeecCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHhhhhcCCceEEEEEccccCCCcceeEEEEecCee
Confidence 4599999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred -eecCcccccceeEEEEEEecCCeeeeEEEEEEcCCCCCCCCCCCCCCCCeEEEeCCCCc
Q 026588 158 -VSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 216 (236)
Q Consensus 158 -l~tG~~~~~~Idya~~~a~Tk~GviGIKVWI~~~~~p~g~~g~~~~~pd~i~i~~~~~~ 216 (236)
||| ++++||||+++|+|+||+||||||||+++ .+|+.-.+.+.+++
T Consensus 174 PL~T---lra~IDY~~~~a~T~yGviGVKVWI~~ge----------~~~~~~~~~~~~~~ 220 (233)
T 3i1m_C 174 PLHT---LRADIDYNTSEAHTTYGVIGVKVWIFKGE----------ILGGMAAVEQPEKP 220 (233)
T ss_dssp CTTC---SSSEEEEEEECCEETTEECEEEEEEEEEC----------C-------------
T ss_pred eccc---cccccEEEEEEEEcCCeeEEEEEEEECCC----------cCCchhhhhccccc
Confidence 999 99999999999999999999999999985 45655444444333
No 8
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=100.00 E-value=2.1e-62 Score=425.59 Aligned_cols=181 Identities=26% Similarity=0.341 Sum_probs=176.4
Q ss_pred CceeeEEecCcChHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q 026588 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (236)
Q Consensus 6 ~~~s~w~a~~~~~~~-------Ire~i~k~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~ 78 (236)
+++|+||+++++|++ ||+||.++|.++|||+|+|+|+++.++|+||+++||++||++|+++++|++.|++.|+
T Consensus 16 ~w~S~W~a~~k~y~~~l~eD~~Ir~~l~k~l~~agis~ieI~r~~~~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~ 95 (206)
T 3r8n_C 16 PWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 95 (206)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHHHHHHHHHSTTTTEEEEECCCCSSSBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHS
T ss_pred CceeEEcCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHC
Confidence 699999999888885 9999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeEEEEEEecCCCcChHHHHHHHHHHHhCCchhHhHHHHHHHHHHhcCCceeEEEEccccccc-eeeeeeeecCee
Q 026588 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKSMKFKDGYM 157 (236)
Q Consensus 79 ~~~~~i~I~v~~i~~p~~~a~~iA~~Ia~qLekr~~fRr~~k~~i~~~m~~gakGikI~iSGRL~G~-rARte~~~~G~v 157 (236)
.++.|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+ |||+|||++|+|
T Consensus 96 ---~~v~I~i~ev~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~gakGikI~iSGRL~Gae~AR~e~~~eG~v 172 (206)
T 3r8n_C 96 ---VPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRV 172 (206)
T ss_dssp ---SCBCCBCCBCSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEEEECCSSSTTCSSCCCCCCEESCC
T ss_pred ---CceEEEEEecCCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHHHhhcCCCceEEEEccccCCCcceeEEEEeccee
Confidence 4599999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred -eecCcccccceeEEEEEEecCCeeeeEEEEEEcCC
Q 026588 158 -VSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSW 192 (236)
Q Consensus 158 -l~tG~~~~~~Idya~~~a~Tk~GviGIKVWI~~~~ 192 (236)
||| ++++||||+++|+|+||++|||||||+++
T Consensus 173 pl~t---lra~IDy~~~~a~T~yGviGVKVwI~~ge 205 (206)
T 3r8n_C 173 PLHT---LRADIDYNTSEAHTTYGVIGVKVWIFKGE 205 (206)
T ss_dssp CTTC---SSSCEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred eccc---cccccEEEEEEEEcCCeeEEEEEEEEcCC
Confidence 999 99999999999999999999999999974
No 9
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.8e-61 Score=420.93 Aligned_cols=184 Identities=17% Similarity=0.259 Sum_probs=178.3
Q ss_pred CceeeEEecCcChHH-------HHHHHHhhhcc-----C---CeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHH
Q 026588 6 SKKRKFVADGVFFAE-------LNEVLTRELAE-----D---GYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70 (236)
Q Consensus 6 ~~~s~w~a~~~~~~~-------Ire~i~k~~~~-----a---gis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~ 70 (236)
+++|.||+++++|++ ||+||.++|.+ | |||+|+|+|+++.++|+||+++|+++||++|+++++|+
T Consensus 17 ~w~S~W~a~~k~y~~~l~eD~~IR~~i~~~l~~~~~~~a~~~gis~ieI~r~~~~i~I~I~~~rPg~vIGk~g~~i~~L~ 96 (218)
T 3bbn_C 17 SHYSLWFSQPKNYAEGLQEDQKIRDCIKNYVQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGFPKLLIENRPQGVEDLK 96 (218)
T ss_dssp CCSBCCCCCTTSSHHHHHHHHHHHHHHHSCCSSSSCCTTTTTCEEEEEBCBSSSCBCCEEEESCTTTTSCSSSCTTHHHH
T ss_pred CcceEEeCChhHHHHHHHHHHHHHHHHHHHHhhhcccccccCccceEEEEEcCCeEEEEEEecCCCcEecCCcHHHHHHH
Confidence 599999999888885 99999999997 8 99999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCeeEEEEEEecCCCcChHHHHHHHHHHHhCCchhHhHHHHHHHHHHhcCCceeEEEEccccccc-eeee
Q 026588 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQ-RAKS 149 (236)
Q Consensus 71 ~~L~k~~~~~~~~i~I~v~~i~~p~~~a~~iA~~Ia~qLekr~~fRr~~k~~i~~~m~~gakGikI~iSGRL~G~-rARt 149 (236)
+.|++.|++.++++.|++.+|++|++||+++|++||+|||+|++|||+|+++++++|++||+||||+|||||+|+ |||+
T Consensus 97 ~~l~k~~~~~~~~v~i~i~ev~~p~l~A~lvAe~Ia~qLe~r~~fRra~k~ai~~~m~~gakGikI~iSGRL~Gae~AR~ 176 (218)
T 3bbn_C 97 INVQKELNCVNRKLNIAITRIAKPYGDPNILAEFIAGQLKSRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARI 176 (218)
T ss_dssp HHHHHHSCSSCCCCCCCEEECSCTTTSHHHHHHHSTTTTTTTCCHHHHHTHHHHHHHTTCCSEEEEECCSCCTTCSSCCC
T ss_pred HHHHHHhccCCceEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhCCCeEEEEEccCcchhhheeE
Confidence 999999976668999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred eeeecCee-eecCcccccceeEEEEEEecCCeeeeEEEEEEcCC
Q 026588 150 MKFKDGYM-VSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSW 192 (236)
Q Consensus 150 e~~~~G~v-l~tG~~~~~~Idya~~~a~Tk~GviGIKVWI~~~~ 192 (236)
|||++|+| ||| ++++||||+++|+|+||++|||||||+++
T Consensus 177 e~~~eG~vpl~t---lra~IDy~~~~a~T~yGviGVKVWI~~~e 217 (218)
T 3bbn_C 177 EWIREGRVPLQT---IRAKIDYCAYTVRTIYGVLGIKIWIFMGE 217 (218)
T ss_dssp CEEEEECCCSSC---STTCCBCCEEECCCSSCCCEEEEEEECCC
T ss_pred EeEecccccCCc---cccceEEEEEEEEcCCeeEEEEEEEecCC
Confidence 99999999 999 99999999999999999999999999985
No 10
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=99.88 E-value=4.9e-23 Score=158.13 Aligned_cols=87 Identities=80% Similarity=1.061 Sum_probs=84.0
Q ss_pred ecCcChHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeeEEEEEEec
Q 026588 13 ADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVN 92 (236)
Q Consensus 13 a~~~~~~~Ire~i~k~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~~~~i~I~v~~i~ 92 (236)
+|+.++++||+||.++|.+||||+|+|+|+++.++|+||+++||++||++|+++++|+..|++.|++.++++.|++.+|+
T Consensus 4 ~~gv~~~~IR~~i~k~l~~aGis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~eV~ 83 (92)
T 1wh9_A 4 GSSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVA 83 (92)
T ss_dssp SSCSHHHHHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECC
T ss_pred hhhhHHHHHHHHHHHHHHHCceeeEEEEECCCeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEEec
Confidence 58899999999999999999999999999999999999999999999999999999999999999887789999999999
Q ss_pred CCCcChH
Q 026588 93 NRGLCAI 99 (236)
Q Consensus 93 ~p~~~a~ 99 (236)
+|++||+
T Consensus 84 ~P~ldA~ 90 (92)
T 1wh9_A 84 TRGSGPS 90 (92)
T ss_dssp CSCCCSC
T ss_pred CCCcCCC
Confidence 9999985
No 11
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=96.42 E-value=0.0054 Score=50.53 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=53.0
Q ss_pred hHHHHHHHHhhhccCCee--eeEE-EEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q 026588 18 FAELNEVLTRELAEDGYS--GVEV-RVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (236)
Q Consensus 18 ~~~Ire~i~k~~~~agis--~IeI-~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~ 78 (236)
..++.+||.+.|...|+. .+++ ....+.+.+.|.....|++||+.|+.++.|+..+....+
T Consensus 4 ~~~~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn 67 (152)
T 2pt7_G 4 LHEIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIH 67 (152)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEecCCcceEECCCCcchHHHHHHHHHHhh
Confidence 456899999999999985 4777 456778999999999999999999999999999987765
No 12
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=93.39 E-value=0.14 Score=44.55 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=62.4
Q ss_pred hHHHHHHHHhhhccCCee-eeEEEEc--CCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC-CCeeEEEEEEecC
Q 026588 18 FAELNEVLTRELAEDGYS-GVEVRVT--PMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP-ENSVELYAEKVNN 93 (236)
Q Consensus 18 ~~~Ire~i~k~~~~agis-~IeI~rt--~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~-~~~i~I~v~~i~~ 93 (236)
.....+||...|...|+. .|++.-. .+.+.|.|....++.+||++|+.++.|+..+....+.. .....|. .++.+
T Consensus 63 ~~~a~~~L~~ll~~m~~~~~i~~~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~~~~rv~-LDi~~ 141 (225)
T 3gku_A 63 QDKAIEFLEQVFDAMNMAVDISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSSDYIRVK-LDTEN 141 (225)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCSSCCEEE-EESTT
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCCCceEEE-Eecch
Confidence 345789999999988874 4555432 47899999999999999999999999999999877522 1223322 22333
Q ss_pred ----CCcChHHHHHHHHHHHhC
Q 026588 94 ----RGLCAIAQAESLRYKLLG 111 (236)
Q Consensus 94 ----p~~~a~~iA~~Ia~qLek 111 (236)
-...=.-+|..+|.+..+
T Consensus 142 YR~rR~e~L~~lA~~~A~kV~~ 163 (225)
T 3gku_A 142 YRERRKETLETLAKNIAYKVKR 163 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 122233456666666554
No 13
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=63.73 E-value=3.6 Score=29.29 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=23.3
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~L 73 (236)
..++.|....-+.|||++|+.|++|++.-
T Consensus 8 ~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~t 36 (82)
T 1zzk_A 8 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 36 (82)
T ss_dssp EEEEEEETTTGGGGTCGGGHHHHHHHHHH
T ss_pred EEEEEEChHhcCeeECCCchHHHHHHHHH
Confidence 35667777888999999999998877663
No 14
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=63.19 E-value=6 Score=31.90 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=43.3
Q ss_pred HHHHHHhhhccCCeeeeEEEEcCCe--EEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q 026588 21 LNEVLTRELAEDGYSGVEVRVTPMR--TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (236)
Q Consensus 21 Ire~i~k~~~~agis~IeI~rt~~~--i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~ 78 (236)
..+|+.+.|.-|.+.+|.+...... ..|.+--..-+..||++|+.++-..+.....++
T Consensus 78 ~~~fI~naLsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~id 137 (144)
T 2cxc_A 78 LERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFG 137 (144)
T ss_dssp HHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeC
Confidence 7889999999999999998753333 334444445667999999999877777776665
No 15
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=62.22 E-value=2.1 Score=30.73 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=23.2
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~L 73 (236)
...+.|-..+-|.|||++|+.|++|++.-
T Consensus 15 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~t 43 (85)
T 2opv_A 15 VQEIMIPAGKAGLVIGKGGETIKQLQERA 43 (85)
T ss_dssp EEEEEECTTTHHHHHTTTTHHHHHHHHHH
T ss_pred EEEEEeChhheeeeECCCCHHHHHHHHHH
Confidence 35667777888999999999998877653
No 16
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=62.07 E-value=2.8 Score=29.13 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=21.8
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q 026588 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 46 i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
+++.|-...-|.|||++|+.+++|++.
T Consensus 5 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 31 (76)
T 1dtj_A 5 VEMAVPENLVGAILGKGGKTLVEYQEL 31 (76)
T ss_dssp EEEEEETTTHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEChHHcceEECCCchHHHHHHHH
Confidence 456667778889999999999887765
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=59.64 E-value=5.3 Score=30.02 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=23.8
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
.+++.|-...-+.|||++|+.|++|++.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~ 35 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQ 35 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHH
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHH
Confidence 4677888899999999999999887665
No 18
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=59.41 E-value=2.6 Score=31.53 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=24.4
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHH
Q 026588 44 MRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (236)
Q Consensus 44 ~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L 73 (236)
...++.|-..+-|.|||++|+.|++|++.-
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~t 44 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKAS 44 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHH
Confidence 346677788888999999999998877764
No 19
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=58.83 E-value=2.4 Score=29.70 Aligned_cols=28 Identities=11% Similarity=0.487 Sum_probs=23.1
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
.+++.|....-|.|||++|+.|++|++.
T Consensus 6 ~~~i~ip~~~ig~iIGkgG~~Ik~I~~~ 33 (73)
T 2axy_A 6 TIRLLMHGKEVGSIIGKKGESVKKMREE 33 (73)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChhHeeeEECCCCHHHHHHHHH
Confidence 4566777788889999999999887765
No 20
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=58.73 E-value=8.4 Score=27.54 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=22.7
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~L 73 (236)
.+++.|-...-|.|||++|+.|++|++.-
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~t 32 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQELT 32 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHHh
Confidence 35566777788899999999998877653
No 21
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=57.77 E-value=3.5 Score=29.32 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=21.9
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q 026588 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 46 i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
.++.|-...-|.|||++|+.|++|++.
T Consensus 8 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 34 (82)
T 1wvn_A 8 HELTIPNNLIGCIIGRQGANINEIRQM 34 (82)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEchHhccceeCCCchhHHHHHHH
Confidence 456666778889999999999887765
No 22
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=57.12 E-value=11 Score=32.86 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=35.4
Q ss_pred eEEEEEEecccc---eeeccCcccHHHH----HHHHHHHhCCCCCeeEEEE-EEecC
Q 026588 45 RTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSVELYA-EKVNN 93 (236)
Q Consensus 45 ~i~I~I~~~rPg---~iIG~kg~~i~~l----~~~L~k~~~~~~~~i~I~v-~~i~~ 93 (236)
.+.-+||++|++ ++||++|+.|+++ +..|++.|+ .+|.+.+ ++|++
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~---~~v~l~l~vkv~~ 292 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILG---RPVYLELWVKVVP 292 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHT---SCEEEEEEEEECT
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhC---CceEEEEEEEECC
Confidence 588899999887 5999999999765 567888998 5676653 45544
No 23
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=55.41 E-value=2.9 Score=29.23 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=21.6
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q 026588 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 46 i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
.++.|-...-|.|||++|+.|++|++.
T Consensus 7 ~~i~Ip~~~vg~iIGkgG~~Ik~I~~~ 33 (76)
T 2p2r_A 7 HELTIPNDLIGCIIGRQGAKINEIRQM 33 (76)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEChHHcceEECCCChHHHHHHHH
Confidence 456666677789999999999887765
No 24
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=55.04 E-value=3 Score=30.61 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=23.1
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHHH
Q 026588 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (236)
Q Consensus 46 i~I~I~~~rPg~iIG~kg~~i~~l~~~L~ 74 (236)
.++.|-..+-+.|||++|+.|++|++.-.
T Consensus 17 ~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tg 45 (94)
T 1x4m_A 17 QEIMIPASKAGLVIGKGGETIKQLQERAG 45 (94)
T ss_dssp EEEEECHHHHHHHSCSSSSHHHHHHHHHT
T ss_pred EEEEEChhhcceEECCCCHHHHHHHHHHC
Confidence 45566667888999999999999887644
No 25
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=53.89 E-value=3.9 Score=28.47 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=21.9
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q 026588 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 46 i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
..+.|-..+-+.|||++|+.|++|++.
T Consensus 7 ~~i~I~~~~ig~iIG~gG~~I~~I~e~ 33 (71)
T 1vig_A 7 VEINIDHKFHRHLIGKSGANINRIKDQ 33 (71)
T ss_dssp EEEEECSSHHHHHTCSSCCHHHHHHHH
T ss_pred EEEEECHHHhhhhcCCCCccHHHHHHH
Confidence 455666677889999999999988776
No 26
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=50.02 E-value=4.1 Score=29.72 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=22.1
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
..++.|-...-+.|||++|+.|++|++.
T Consensus 16 ~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~ 43 (92)
T 1x4n_A 16 TEEYKVPDGMVGFIIGRGGEQISRIQQE 43 (92)
T ss_dssp EEEEEEEHHHHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEChHHcceeECCCchHHHHHHHH
Confidence 4556666677889999999999887665
No 27
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=49.91 E-value=4 Score=29.53 Aligned_cols=27 Identities=22% Similarity=0.519 Sum_probs=21.2
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q 026588 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 46 i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
.++.|....-+.|||++|+.|++|++.
T Consensus 16 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 42 (89)
T 1j5k_A 16 TQVTIPKDLAGSIIGKGGQRIKQIRHE 42 (89)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEChhhcceeECCCCHhHHHHHHH
Confidence 455666677788999999999887665
No 28
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=49.77 E-value=5.3 Score=31.45 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=25.6
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHHH
Q 026588 44 MRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (236)
Q Consensus 44 ~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~ 74 (236)
..+++.|-...-|.+||++|+.|++|++.-.
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg 33 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFAS 33 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHT
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHC
Confidence 4567788888899999999999988877654
No 29
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=49.38 E-value=14 Score=32.19 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=34.3
Q ss_pred eEEEEEEecccc---eeeccCcccHHHH----HHHHHHHhCCCCCeeEEEE-EEecC
Q 026588 45 RTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSVELYA-EKVNN 93 (236)
Q Consensus 45 ~i~I~I~~~rPg---~iIG~kg~~i~~l----~~~L~k~~~~~~~~i~I~v-~~i~~ 93 (236)
.+..+||+++++ ++||++|+.|+++ +..|+++|+ .++.+++ ++|++
T Consensus 229 ~i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~---~~v~l~l~vkv~~ 282 (301)
T 1wf3_A 229 YIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLG---KKVYLDLEVKVYP 282 (301)
T ss_dssp EEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT---SEEEEEEEEEECT
T ss_pred EEEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHC---CceEEEEEEEECC
Confidence 466689999886 5999999999765 567888998 6776653 44543
No 30
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=49.04 E-value=18 Score=27.22 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=24.6
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHHH
Q 026588 43 PMRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (236)
Q Consensus 43 ~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L 73 (236)
+..+++.|...+-+.|||++|+.|++|++.-
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~T 40 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDA 40 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHH
Confidence 4456788888899999999999998877653
No 31
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=47.77 E-value=47 Score=28.58 Aligned_cols=70 Identities=29% Similarity=0.386 Sum_probs=43.4
Q ss_pred HHHHHHhhhccC-Ce-eeeEEEEc------CCeEEEEEEecccc---eeeccCcccHHHH----HHHHHHHhCCCCCeeE
Q 026588 21 LNEVLTRELAED-GY-SGVEVRVT------PMRTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSVE 85 (236)
Q Consensus 21 Ire~i~k~~~~a-gi-s~IeI~rt------~~~i~I~I~~~rPg---~iIG~kg~~i~~l----~~~L~k~~~~~~~~i~ 85 (236)
+|+-+...+... .+ ..+.|+.- ...+..+|++.+.+ ++||++|+.++++ +..|+++|+ .++.
T Consensus 198 ~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~ar~~i~~~~~---~~v~ 274 (301)
T 1ega_A 198 IREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFE---APVH 274 (301)
T ss_dssp HHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTT---SCEE
T ss_pred HHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEEEEEEEECCceEEEECCCcHHHHHHHHHHHHHHHHHHC---CCeE
Confidence 555554444332 11 34566521 23577889997765 6999999999765 567888888 4565
Q ss_pred EEE-EEecC
Q 026588 86 LYA-EKVNN 93 (236)
Q Consensus 86 I~v-~~i~~ 93 (236)
+.. +++++
T Consensus 275 l~l~vkv~~ 283 (301)
T 1ega_A 275 LELWVKVKS 283 (301)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEECC
Confidence 553 34443
No 32
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.43 E-value=3.7 Score=29.81 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEEecccceeeccCcccHHHHHHH
Q 026588 47 EIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 47 ~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
.+.|-...-|.|||++|+.|++|++.
T Consensus 13 ~i~VP~~~vG~IIGkgG~tIk~Iqe~ 38 (83)
T 2dgr_A 13 QVRVPYRVVGLVVGPKGATIKRIQQR 38 (83)
T ss_dssp EEECCHHHHHHHHTTTTSSHHHHHHH
T ss_pred EEEeChHHeeeeECCCchHHHHHHHH
Confidence 34444466678999999999998876
No 33
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=45.73 E-value=18 Score=29.10 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=40.6
Q ss_pred HHHHH--HhhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHH
Q 026588 21 LNEVL--TRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (236)
Q Consensus 21 Ire~i--~k~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L 73 (236)
-+.|+ ...+..+.+-++-+.-..+.+.+.+.....|..+|.+|++++.+.+.|
T Consensus 11 ~~r~i~lfe~~t~a~~~dcvid~~~dr~i~vVk~g~vGa~IG~~G~ri~~i~~el 65 (144)
T 2cxc_A 11 ELRYISVFHSITGVTAYRCIVDEENNRLIFLVSEGEAGRAIGRGGRLIKLLREAL 65 (144)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEEGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeeeEEEeCCCCEEEEEEeCCCccccCccCchHHHHHHHHh
Confidence 34455 345567778888776666888888887778999999999999987766
No 34
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=45.05 E-value=7.1 Score=28.91 Aligned_cols=30 Identities=13% Similarity=0.323 Sum_probs=23.7
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~ 74 (236)
.+.+.|-...-+.|||++|+.|++|++.-.
T Consensus 18 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg 47 (97)
T 2ctl_A 18 KLSVTVDPKYHPKIIGRKGAVITQIRLEHD 47 (97)
T ss_dssp EEEEECCTTTHHHHSCSSSCHHHHHHHHHT
T ss_pred eEEEEECHHHhhhcCCCCchhHHHHHHHHC
Confidence 456666667778899999999999887644
No 35
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=43.66 E-value=5.6 Score=29.15 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=23.8
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q 026588 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (236)
Q Consensus 46 i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~ 78 (236)
..+.|-..+-+.|||++|+.|++|++.-.-...
T Consensus 19 ~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~ 51 (94)
T 2cte_A 19 ATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQ 51 (94)
T ss_dssp EEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCB
T ss_pred EEEEEChHHeeeeECCCChhHHHHHHHHCCEEE
Confidence 455555577788999999999998876443333
No 36
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=39.57 E-value=4.9 Score=30.21 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=23.2
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHH
Q 026588 43 PMRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 43 ~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
|....+.|-..+-+.|||++|+.|++|++.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~ee 45 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDE 45 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHH
Confidence 444566666677888999999999887765
No 37
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=37.08 E-value=8.2 Score=28.49 Aligned_cols=30 Identities=13% Similarity=0.428 Sum_probs=23.6
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~ 74 (236)
...+.|-..+-+.|||++|+.+++|++.-.
T Consensus 18 t~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg 47 (95)
T 2ctm_A 18 SEDVPLDHRVHARIIGARGKAIRKIMDEFK 47 (95)
T ss_dssp CEEEECCTTTHHHHHCSSSCHHHHHHHHHT
T ss_pred EEEEEECHHHccccCCCCcchHHHHHHHHC
Confidence 455666667788899999999998877643
No 38
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=34.92 E-value=10 Score=30.27 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=24.0
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~ 74 (236)
.+++.|....-|.+||++|+.|++|++.-.
T Consensus 7 ~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg 36 (178)
T 2anr_A 7 FLKVLIPSYAAGSIIGKGGQTIVQLQKETG 36 (178)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEEChhHeeeeECCCcHHHHHHHHHhC
Confidence 356677778889999999999998877643
No 39
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=34.05 E-value=8.3 Score=30.18 Aligned_cols=30 Identities=10% Similarity=0.432 Sum_probs=23.6
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~ 74 (236)
.+++.|....-|.+||++|+.|++|++.-.
T Consensus 6 ~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg 35 (160)
T 2jzx_A 6 TIRLLMHGKEVGSIIGKKGESVKKMREESG 35 (160)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEEchhheeeeECCCcHHHHHHHHHHC
Confidence 456667777888999999999988877643
No 40
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=33.01 E-value=1.4e+02 Score=21.67 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=26.8
Q ss_pred eEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHh---CCCCCeeEEEE
Q 026588 37 VEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF---KFPENSVELYA 88 (236)
Q Consensus 37 IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~---~~~~~~i~I~v 88 (236)
|.|+|....+.|.|.++- |++++.--..|++.+ |- ++++|.+
T Consensus 10 ikiqrdgqeieidirvst--------gkeleralqelekalaraga--rnvqiti 54 (96)
T 2jvf_A 10 IKIQRDGQEIEIDIRVST--------GKELERALQELEKALARAGA--RNVQITI 54 (96)
T ss_dssp EEEEETTEEEEEEEECCS--------SSHHHHHHHHHHHHHHHHTC--SEEEEEE
T ss_pred EEEeeCCeEEEEEEEEcc--------cHHHHHHHHHHHHHHHhccc--cceEEEE
Confidence 678888888888887754 555554444444433 32 6777665
No 41
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=32.84 E-value=12 Score=29.24 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=21.0
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q 026588 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 46 i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
.++.|-...-|.+||++|+.|++|++.
T Consensus 4 ~~~~Vp~~~~g~iIGk~G~~Ik~i~~~ 30 (164)
T 2jvz_A 4 QEIMIPAGKAGLVIGKGGETIKQLQER 30 (164)
T ss_dssp EEEEECTTCHHHHTCTTTHHHHHHHHT
T ss_pred EEEEechhheeEEECCChHHHHHHHHH
Confidence 345566677788999999999887764
No 42
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=32.09 E-value=61 Score=24.86 Aligned_cols=26 Identities=4% Similarity=0.171 Sum_probs=22.9
Q ss_pred ChHHHHHHHHhhhccCCeeeeEEEEc
Q 026588 17 FFAELNEVLTRELAEDGYSGVEVRVT 42 (236)
Q Consensus 17 ~~~~Ire~i~k~~~~agis~IeI~rt 42 (236)
.-+.+++||.++|.++.++.+++++.
T Consensus 13 LP~~~~~fi~~~fp~~~i~~v~~e~~ 38 (128)
T 3elg_A 13 LPVAAREMIGKHFSQTKVAYIKIEKD 38 (128)
T ss_dssp SCHHHHHHHHHHCTTSCEEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCCceEEEEEEcc
Confidence 34569999999999999999999997
No 43
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=31.53 E-value=28 Score=33.56 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=40.5
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHH
Q 026588 19 AELNEVLTREL-AEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKR 76 (236)
Q Consensus 19 ~~Ire~i~k~~-~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~ 76 (236)
.+|++-|.+.+ .++.+++||.+= -+|.||+..|..+.. ++..+++|-+.|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 60 (636)
T 2ycb_A 7 EEIKRTIMQRLPERVQVAKVEFEG----PEVVIYTKNPEIITE-NGNLIRDIAKDIRKR 60 (636)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEEET----TEEEEEESCTHHHHS-CTHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhCCCCCeEEEEEEEC----CEEEEEeCCHHHhhc-ccHHHHHHHHHhhce
Confidence 56888888888 678999999874 578999999998774 445666666666653
No 44
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=31.34 E-value=27 Score=33.81 Aligned_cols=53 Identities=21% Similarity=0.444 Sum_probs=36.6
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHH
Q 026588 19 AELNEVLTREL-AEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKR 76 (236)
Q Consensus 19 ~~Ire~i~k~~-~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~ 76 (236)
.+|++-|.+.+ .++.+++|+.+= -+|.||+..|..+.. ++..+++|-+.|+|+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 69 (651)
T 3af5_A 16 RDIRAVVNQMVPKEAKITEIEFEG----PELVIYVKNPEAIMK-DGELIKDLAKVLKKR 69 (651)
T ss_dssp HHHHHHHTTTSCTTSCEEEEEECS----SSEEEEESSCC------CCSHHHHHHHHTSC
T ss_pred HHHHHHHHHhCCCCCeEEEEEEEC----CeEEEEeCCHHHhhc-ccHHHHHHHHHhhce
Confidence 45777777788 578999999864 567899999999874 456677777766664
No 45
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=30.87 E-value=12 Score=29.82 Aligned_cols=28 Identities=14% Similarity=0.425 Sum_probs=22.8
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
.+++.|....-|.|||++|+.|++|++.
T Consensus 105 ~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 105 QVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 5677777788899999999999887654
No 46
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=29.56 E-value=17 Score=28.84 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=22.5
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
.+++.|-...-|.|||++|+.|++|++.
T Consensus 105 ~~~i~vp~~~~g~iIGkgG~~Ik~I~~~ 132 (174)
T 1j4w_A 105 EFNFIVPTGKTGLIIGKGGETIKSISQQ 132 (174)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCchHHHHHHHH
Confidence 4566777788889999999999887655
No 47
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=28.86 E-value=42 Score=22.05 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=25.3
Q ss_pred CcccHHHHHHHHHHHhCCCCCeeEEEEEEec
Q 026588 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVN 92 (236)
Q Consensus 62 kg~~i~~l~~~L~k~~~~~~~~i~I~v~~i~ 92 (236)
|.+-++.+.+.+.+.+|.+...+.|.+.++.
T Consensus 15 K~~L~~~it~~~~~~lg~~~~~v~V~i~E~~ 45 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMDRSAITILIHEPP 45 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEEeC
Confidence 4556788999999999988888998888774
No 48
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=28.84 E-value=19 Score=28.07 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=22.4
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHH
Q 026588 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (236)
Q Consensus 46 i~I~I~~~rPg~iIG~kg~~i~~l~~~L 73 (236)
.++.|-...-|.+||++|+.|++|++.-
T Consensus 87 ~~i~vp~~~~g~iIGkgG~~I~~i~~~t 114 (163)
T 3krm_A 87 THIRVPASAAGRVIGKGGKTVNELQNLT 114 (163)
T ss_dssp EEEEEETTTHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEcChhheeeEEcCCChHHHHHHHHh
Confidence 4566677788899999999999887653
No 49
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.60 E-value=41 Score=32.46 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=46.7
Q ss_pred HHHHHHHhhhc-cCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeeEEEEEEecCCCcCh
Q 026588 20 ELNEVLTRELA-EDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCA 98 (236)
Q Consensus 20 ~Ire~i~k~~~-~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~~~~i~I~v~~i~~p~~~a 98 (236)
+-+++|.+... +||+.+|..+ ++.-.|.+++.+||+++|+.|..++++ .+..+.. . ..+..|-...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~g~~~~~~~~i----~~~~~~~---~----~~~~~p~~~~ 141 (636)
T 2ycb_A 75 KAIRKIHEIVPEEAKITNISFD--DVTCEVIIEARKPGLVIGKYGSTSREI----VKNTGWA---P----KILRTPPISS 141 (636)
T ss_dssp HHHHHHHHTSCSTTCEEEEEEE--TTTTEEEEEESCTHHHHCTTSHHHHHH----HHHHCCE---E----EEEECCSSCC
T ss_pred HHHHHHHHhCCCccCccceEec--CCCceEEEEECCCCccccccchhHHHH----hhccCCc---c----ceeecCCcch
Confidence 35666666553 5788866654 556788999999999999887655554 3455531 1 1123566665
Q ss_pred HHHHHHHHH
Q 026588 99 IAQAESLRY 107 (236)
Q Consensus 99 ~~iA~~Ia~ 107 (236)
..+....+.
T Consensus 142 ~~~~~i~~~ 150 (636)
T 2ycb_A 142 EIIERIRRT 150 (636)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 555544443
No 50
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=27.94 E-value=16 Score=29.08 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=23.1
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHH
Q 026588 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (236)
Q Consensus 45 ~i~I~I~~~rPg~iIG~kg~~i~~l~~~L 73 (236)
.+++.|-...-|.|||++|+.|++|++.-
T Consensus 4 ~~~~~vp~~~vg~iIGkgG~~Ik~i~~~t 32 (174)
T 1j4w_A 4 MIDVPIPRFAVGIVIGRNGEMIKKIQNDA 32 (174)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEChhheeeeecCCchHHHHHHHHh
Confidence 35666777788899999999998887764
No 51
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=27.66 E-value=48 Score=32.07 Aligned_cols=49 Identities=20% Similarity=0.408 Sum_probs=35.0
Q ss_pred HHHHHHhhhc-cCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHH
Q 026588 21 LNEVLTRELA-EDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTS 71 (236)
Q Consensus 21 Ire~i~k~~~-~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~ 71 (236)
-+++|.+... +||+.+|..+ ++.-.|.+++.+|++++|+.|..++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~g~~~~~~~~i~~ 134 (651)
T 3af5_A 85 AEKLIFEIVPKEAEITNIAFD--PSVGEVLIEAKKPGLVIGKNGETLRLITQ 134 (651)
T ss_dssp HHHHHHHHSCGGGCCCEEEEE--TTTTEEEEEESSTTTTSCTTSHHHHHHHH
T ss_pred HHHHHHHhCCCccCccceeec--CCCceEEEEECCCCccccccchhHHHHhh
Confidence 5556665553 5788866554 55677899999999999998766655443
No 52
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=27.39 E-value=43 Score=32.41 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=46.4
Q ss_pred HHHHHHHhhhc-cCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeeEEEEEEecCCCcCh
Q 026588 20 ELNEVLTRELA-EDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCA 98 (236)
Q Consensus 20 ~Ire~i~k~~~-~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~~~~i~I~v~~i~~p~~~a 98 (236)
+-+++|.+... +||+.+|.. .++.-.|.+++.+|++++|+.|..++++.+ ..+. . ...+..|-...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~----~~~~---~----~~~~~~p~~~~ 145 (640)
T 2xr1_A 79 DSISIIEEVVPKESVISSYYF--DPDSGEVIIEAEKPGLVIGKHGATLREITK----QIGW---I----PKVVRTPPIKS 145 (640)
T ss_dssp HHHHHHHHHSCGGGCEEEEEE--CTTTSEEEEEESSHHHHHCSSSHHHHHHHH----HHCS---E----EEEEECCSSCC
T ss_pred HHHHHHHHhCCCccCccceee--cCCCceEEEEeCCCCcccccchhhHHHHHh----ccCc---c----cccccCCCcch
Confidence 35566665553 578876554 556778899999999999998766655443 3442 1 11233566665
Q ss_pred HHHHHHHHH
Q 026588 99 IAQAESLRY 107 (236)
Q Consensus 99 ~~iA~~Ia~ 107 (236)
..++.-.+.
T Consensus 146 ~~~~~i~~~ 154 (640)
T 2xr1_A 146 RTVKNIREF 154 (640)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 555544443
No 53
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=27.23 E-value=15 Score=28.68 Aligned_cols=31 Identities=16% Similarity=0.462 Sum_probs=23.9
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHHH
Q 026588 44 MRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (236)
Q Consensus 44 ~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~ 74 (236)
..+++.|-...-|.+||++|+.+++|++.-.
T Consensus 89 ~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tg 119 (160)
T 2jzx_A 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTG 119 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHS
T ss_pred EEEEEEEChhheeeEECCCCHHHHHHHHHhC
Confidence 3456666677788999999999998877643
No 54
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=26.43 E-value=26 Score=33.93 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=39.7
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHH
Q 026588 19 AELNEVLTREL-AEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKR 76 (236)
Q Consensus 19 ~~Ire~i~k~~-~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~ 76 (236)
.+|++-|.+.+ .++.+++||.+= -+|.||+..|..+.. ++..+++|-+.|+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 64 (640)
T 2xr1_A 11 LDLKHKIEKNLPAGVTITDVEFEG----PQLVLYTEEPRKFAD-DGNIIRNLAKELRTR 64 (640)
T ss_dssp HHHHHHHHHHSCTTCCCCCEEEET----TEEEEEESCHHHHHH-CTHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhCCCCCeEEEEEEEC----CEEEEEeCCHHHhcc-ccHHHHHHHHHhhce
Confidence 46788888888 678999999874 578999999998764 345566666666653
No 55
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=24.36 E-value=16 Score=28.50 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=22.2
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q 026588 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 46 i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
+++.|....-|.|||++|..+++|++.
T Consensus 93 ~~i~vp~~~~g~iIGk~G~~I~~i~~~ 119 (164)
T 2jvz_A 93 IDVPVPRHSVGVVIGRSGEMIKKIQND 119 (164)
T ss_dssp BCCEEETTTHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEChhhccccCCCCcHhHHHHHHH
Confidence 666777778899999999999887755
No 56
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=23.39 E-value=20 Score=26.75 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=18.9
Q ss_pred EEEEecccceeeccCcccHHHHHHH
Q 026588 48 IIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 48 I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
|.+-....+.|||++|+.|++|++.
T Consensus 31 i~vp~~~h~~IIG~~G~~Ik~i~~~ 55 (102)
T 2ctf_A 31 VAAPSWLHRFIIGKKGQNLAKITQQ 55 (102)
T ss_dssp EECCSTTHHHHHTTTTCHHHHHHHH
T ss_pred EEeCHHHHhhhcCCCCccHHHHHHH
Confidence 3344445567999999999998886
No 57
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=22.22 E-value=29 Score=27.20 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=21.0
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q 026588 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (236)
Q Consensus 46 i~I~I~~~rPg~iIG~kg~~i~~l~~~ 72 (236)
..|.+--..-|.+||++|+.++.+++.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~ 95 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDK 95 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHH
Confidence 566666677788999999998876654
No 58
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=21.90 E-value=1.7e+02 Score=23.65 Aligned_cols=49 Identities=12% Similarity=0.334 Sum_probs=36.8
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeeEEEE
Q 026588 28 ELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (236)
Q Consensus 28 ~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~~~~i~I~v 88 (236)
.+...||. ..++.++|-+.+|.+ +..+.++++.|.+.++.+..+|+|..
T Consensus 83 ~~~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKA 131 (152)
T 1iv3_A 83 LVEARGAK-------LLQASLVLTLDRPKL-----GPHRKALVDSLSRLMRLPQDRIGLTF 131 (152)
T ss_dssp HHHHTTCC-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEecCCcC-----HHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 44555654 345677889999977 67889999999999998666676554
No 59
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=21.88 E-value=95 Score=20.43 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=25.6
Q ss_pred CcccHHHHHHHHHHHhCCCCCeeEEEEEEecC
Q 026588 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (236)
Q Consensus 62 kg~~i~~l~~~L~k~~~~~~~~i~I~v~~i~~ 93 (236)
+.+-++.+.+.+...++.+...+.|.+.++..
T Consensus 19 K~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~ 50 (67)
T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIIDEVDS 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHCcCcccEEEEEEEeCH
Confidence 34456888889999999888889999988754
No 60
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=20.84 E-value=89 Score=23.39 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=33.8
Q ss_pred EcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeeEEEEEEecC
Q 026588 41 VTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (236)
Q Consensus 41 rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~~~~i~I~v~~i~~ 93 (236)
|+..-+.|.|. .+|.=...|.+-++.+.+.|.+.++.+...+.|.+.++..
T Consensus 62 ~~~~~~~I~i~--~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~I~i~e~~~ 112 (131)
T 2aal_A 62 RSSAVVLLTVI--SRPRSEEQKVCFYKLLTGALERDCGISPDDVIVALVENSD 112 (131)
T ss_dssp CCTTCEEEEEE--ESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCG
T ss_pred CCCCeEEEEEE--eCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCH
Confidence 33344555555 3332222344556888899999999888889999988764
No 61
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=20.79 E-value=2.9e+02 Score=23.24 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEeccccee-eccCcccHHHHHHHHHHHhCCCCCeeEEEEE
Q 026588 19 AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNV-LGEKGRRIRELTSVVQKRFKFPENSVELYAE 89 (236)
Q Consensus 19 ~~Ire~i~k~~~~agis~IeI~rt~~~i~I~I~~~rPg~i-IG~kg~~i~~l~~~L~k~~~~~~~~i~I~v~ 89 (236)
.+|++.+.+.-.-.++.++.+.+......+.+|..-|... +..-.+-.+++++.|++.++. ..+.|.++
T Consensus 209 ~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~--~~v~ih~e 278 (283)
T 3h90_A 209 QEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG--SDVIIHQD 278 (283)
T ss_dssp HHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT--CEEEEEEE
T ss_pred HHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC--CeEEEEec
Confidence 3466666543222457777787777788888888776542 111123346777777777763 56666654
No 62
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=20.27 E-value=1.9e+02 Score=23.56 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=37.0
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeeEEEE
Q 026588 28 ELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (236)
Q Consensus 28 ~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~~~~i~I~v 88 (236)
.+...||. ..++.++|-+.+|.+ +..+.++++.|.+.++.+..+|+|..
T Consensus 86 ~v~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKA 134 (160)
T 2pmp_A 86 LMDEAGYE-------IGNLDATLILQRPKI-----SPHKETIRSNLSKLLGADPSVVNLKA 134 (160)
T ss_dssp HHHHHTEE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEecCCcC-----HHHHHHHHHHHHHHHCCCcceEEEEE
Confidence 44556654 345677889999977 67889999999999998666676554
No 63
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=20.09 E-value=2e+02 Score=23.49 Aligned_cols=49 Identities=12% Similarity=0.191 Sum_probs=37.5
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeeEEEE
Q 026588 28 ELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (236)
Q Consensus 28 ~~~~agis~IeI~rt~~~i~I~I~~~rPg~iIG~kg~~i~~l~~~L~k~~~~~~~~i~I~v 88 (236)
.+...||. ..++.++|-+.+|.+ +..+.++++.|.+.++.+..+|+|..
T Consensus 85 ~v~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKA 133 (159)
T 1t0a_A 85 LAKAKGFE-------LGNLDVTIIAQAPKM-----APHIEDMRQVLAADLNADVADINVKA 133 (159)
T ss_dssp HHHHTTEE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEcCCCcC-----hHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 44566764 345677888999977 67889999999999998666777654
Done!