Query 026589
Match_columns 236
No_of_seqs 364 out of 3264
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:59:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1533 Predicted GTPase [Gene 100.0 2E-55 4.3E-60 364.2 15.1 234 1-236 1-240 (290)
2 KOG1534 Putative transcription 100.0 6.7E-55 1.4E-59 356.0 14.8 233 1-236 2-238 (273)
3 PF03029 ATP_bind_1: Conserved 100.0 2.3E-45 5E-50 313.2 12.8 221 7-236 1-224 (238)
4 KOG1532 GTPase XAB1, interacts 100.0 5.7E-32 1.2E-36 229.2 14.3 215 2-221 19-235 (366)
5 COG1120 FepC ABC-type cobalami 100.0 4.8E-32 1E-36 231.6 9.1 164 3-175 29-230 (258)
6 COG1126 GlnQ ABC-type polar am 100.0 1.8E-31 4E-36 220.1 10.9 157 3-168 29-220 (240)
7 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.3E-31 9.3E-36 224.9 10.2 154 3-165 31-220 (254)
8 COG1125 OpuBA ABC-type proline 100.0 6E-29 1.3E-33 209.5 10.3 155 3-165 28-217 (309)
9 COG1131 CcmA ABC-type multidru 100.0 9.1E-29 2E-33 217.2 11.7 157 3-168 32-221 (293)
10 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-28 2.5E-33 201.5 9.8 154 3-180 29-214 (245)
11 COG1116 TauB ABC-type nitrate/ 100.0 3.6E-28 7.9E-33 205.0 12.0 147 3-157 30-204 (248)
12 COG1127 Ttg2A ABC-type transpo 99.9 6.5E-28 1.4E-32 201.8 10.3 158 3-168 35-230 (263)
13 PRK13537 nodulation ABC transp 99.9 8.2E-28 1.8E-32 212.4 10.6 159 3-170 34-224 (306)
14 COG1124 DppF ABC-type dipeptid 99.9 1.2E-27 2.7E-32 200.6 10.9 158 3-168 34-226 (252)
15 COG1135 AbcC ABC-type metal io 99.9 1.3E-27 2.7E-32 206.4 11.0 164 3-175 33-233 (339)
16 COG1136 SalX ABC-type antimicr 99.9 4E-27 8.7E-32 197.8 12.3 149 3-160 32-218 (226)
17 PRK13768 GTPase; Provisional 99.9 1.5E-25 3.4E-30 192.9 22.2 230 1-235 1-233 (253)
18 TIGR01188 drrA daunorubicin re 99.9 1.8E-27 4E-32 209.7 10.4 157 3-168 20-208 (302)
19 COG1122 CbiO ABC-type cobalt t 99.9 1.2E-27 2.7E-32 203.3 8.2 162 3-173 31-228 (235)
20 PRK13536 nodulation factor exp 99.9 3E-27 6.5E-32 211.5 10.8 160 3-171 68-259 (340)
21 COG3638 ABC-type phosphate/pho 99.9 3.7E-27 8E-32 196.8 10.5 159 3-170 31-234 (258)
22 COG0411 LivG ABC-type branched 99.9 2.7E-27 5.9E-32 198.6 8.0 167 3-178 31-244 (250)
23 COG3840 ThiQ ABC-type thiamine 99.9 6.2E-27 1.3E-31 188.7 9.5 157 3-168 26-214 (231)
24 TIGR02314 ABC_MetN D-methionin 99.9 7E-27 1.5E-31 209.2 10.9 162 3-173 32-230 (343)
25 COG4604 CeuD ABC-type enteroch 99.9 6.1E-27 1.3E-31 190.9 9.3 161 3-172 28-224 (252)
26 TIGR00960 3a0501s02 Type II (G 99.9 1.4E-26 3E-31 194.3 11.7 145 3-156 30-210 (216)
27 COG3842 PotA ABC-type spermidi 99.9 8.1E-27 1.8E-31 207.4 10.5 141 3-152 32-205 (352)
28 PRK11650 ugpC glycerol-3-phosp 99.9 1.3E-26 2.7E-31 208.7 10.5 154 3-165 31-216 (356)
29 COG3839 MalK ABC-type sugar tr 99.9 9.2E-27 2E-31 206.1 9.4 147 3-158 30-208 (338)
30 cd03261 ABC_Org_Solvent_Resist 99.9 2E-26 4.2E-31 195.9 11.0 149 3-160 27-213 (235)
31 COG4559 ABC-type hemin transpo 99.9 3.3E-26 7.1E-31 188.5 11.6 165 2-173 27-230 (259)
32 cd03259 ABC_Carb_Solutes_like 99.9 2.5E-26 5.4E-31 192.4 11.0 145 3-156 27-203 (213)
33 cd03226 ABC_cobalt_CbiO_domain 99.9 2.3E-26 4.9E-31 191.7 10.5 144 3-155 27-197 (205)
34 cd03266 ABC_NatA_sodium_export 99.9 3.7E-26 8E-31 191.9 11.5 145 3-156 32-208 (218)
35 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3.6E-26 7.7E-31 192.0 11.3 143 3-155 31-211 (218)
36 TIGR01288 nodI ATP-binding ABC 99.9 2.2E-26 4.7E-31 203.0 10.5 157 3-168 31-219 (303)
37 cd03265 ABC_DrrA DrrA is the A 99.9 3.8E-26 8.2E-31 192.3 11.4 149 3-160 27-208 (220)
38 cd03219 ABC_Mj1267_LivG_branch 99.9 3.6E-26 7.8E-31 194.2 11.4 147 3-158 27-217 (236)
39 PRK13651 cobalt transporter AT 99.9 3.9E-26 8.5E-31 201.6 11.9 167 3-178 34-259 (305)
40 PRK13643 cbiO cobalt transport 99.9 1.6E-26 3.5E-31 202.5 9.0 166 3-177 33-237 (288)
41 PRK09536 btuD corrinoid ABC tr 99.9 3E-26 6.4E-31 208.9 11.0 161 3-172 30-227 (402)
42 cd03218 ABC_YhbG The ABC trans 99.9 3.7E-26 8E-31 193.7 10.5 148 3-159 27-208 (232)
43 TIGR02673 FtsE cell division A 99.9 7.8E-26 1.7E-30 189.4 12.3 144 3-155 29-208 (214)
44 COG1118 CysA ABC-type sulfate/ 99.9 2.9E-26 6.3E-31 197.7 9.8 161 3-172 29-226 (345)
45 TIGR03265 PhnT2 putative 2-ami 99.9 3.7E-26 7.9E-31 205.5 10.6 155 3-166 31-217 (353)
46 cd03269 ABC_putative_ATPase Th 99.9 6.7E-26 1.5E-30 189.4 11.5 145 3-156 27-200 (210)
47 cd03292 ABC_FtsE_transporter F 99.9 7.8E-26 1.7E-30 189.3 11.8 144 3-155 28-207 (214)
48 COG4152 ABC-type uncharacteriz 99.9 8E-26 1.7E-30 189.6 11.5 162 3-173 29-219 (300)
49 cd03293 ABC_NrtD_SsuB_transpor 99.9 4.4E-26 9.5E-31 191.9 10.0 145 3-156 31-204 (220)
50 TIGR03522 GldA_ABC_ATP gliding 99.9 7.2E-26 1.6E-30 199.6 11.6 158 3-170 29-218 (301)
51 cd03268 ABC_BcrA_bacitracin_re 99.9 9E-26 1.9E-30 188.4 11.4 145 3-156 27-198 (208)
52 TIGR01184 ntrCD nitrate transp 99.9 1.2E-25 2.7E-30 190.8 12.2 155 3-166 12-197 (230)
53 TIGR03258 PhnT 2-aminoethylpho 99.9 6.1E-26 1.3E-30 204.6 10.5 156 3-167 32-222 (362)
54 PRK11153 metN DL-methionine tr 99.9 7.2E-26 1.6E-30 203.0 10.9 160 3-171 32-228 (343)
55 cd03258 ABC_MetN_methionine_tr 99.9 7.8E-26 1.7E-30 191.9 10.3 146 3-157 32-214 (233)
56 PRK11000 maltose/maltodextrin 99.9 7E-26 1.5E-30 204.8 10.6 152 3-163 30-213 (369)
57 TIGR01186 proV glycine betaine 99.9 8.4E-26 1.8E-30 203.5 11.1 155 3-166 20-212 (363)
58 PRK13637 cbiO cobalt transport 99.9 4.8E-26 1.1E-30 199.4 9.3 161 3-172 34-233 (287)
59 cd03262 ABC_HisP_GlnQ_permease 99.9 1.4E-25 3.1E-30 187.6 11.6 144 3-155 27-206 (213)
60 PRK13634 cbiO cobalt transport 99.9 9.2E-26 2E-30 197.9 10.9 162 3-173 34-235 (290)
61 PRK13631 cbiO cobalt transport 99.9 9.7E-26 2.1E-30 200.3 11.0 168 3-179 53-271 (320)
62 cd03225 ABC_cobalt_CbiO_domain 99.9 1.4E-25 3E-30 187.5 11.2 144 3-155 28-205 (211)
63 cd03296 ABC_CysA_sulfate_impor 99.9 9.9E-26 2.2E-30 192.1 10.4 143 3-154 29-207 (239)
64 PRK13647 cbiO cobalt transport 99.9 7.5E-26 1.6E-30 197.0 9.8 156 3-167 32-221 (274)
65 PRK11432 fbpC ferric transport 99.9 8.3E-26 1.8E-30 203.0 10.4 152 3-163 33-216 (351)
66 PRK10851 sulfate/thiosulfate t 99.9 9.5E-26 2.1E-30 202.8 10.8 157 3-168 29-221 (353)
67 PRK09452 potA putrescine/sperm 99.9 1E-25 2.2E-30 204.0 10.7 157 3-168 41-229 (375)
68 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.9E-25 4.2E-30 188.9 11.7 145 3-156 49-214 (224)
69 cd03301 ABC_MalK_N The N-termi 99.9 1.6E-25 3.4E-30 187.5 10.7 143 3-154 27-201 (213)
70 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.7E-25 3.7E-30 187.1 10.8 145 3-156 25-201 (211)
71 PRK13646 cbiO cobalt transport 99.9 6.5E-26 1.4E-30 198.5 8.6 162 3-173 34-235 (286)
72 cd03235 ABC_Metallic_Cations A 99.9 8.8E-26 1.9E-30 189.1 9.0 145 3-156 26-204 (213)
73 cd03224 ABC_TM1139_LivF_branch 99.9 1.8E-25 3.8E-30 188.2 10.9 149 3-160 27-208 (222)
74 PRK13641 cbiO cobalt transport 99.9 7.8E-26 1.7E-30 198.1 8.9 159 3-170 34-231 (287)
75 PRK09493 glnQ glutamine ABC tr 99.9 1.4E-25 3.1E-30 191.1 10.3 146 3-157 28-209 (240)
76 cd03263 ABC_subfamily_A The AB 99.9 2E-25 4.3E-30 187.8 10.9 145 3-157 29-205 (220)
77 TIGR02315 ABC_phnC phosphonate 99.9 1.9E-25 4.1E-30 190.5 10.5 144 3-155 29-217 (243)
78 cd03256 ABC_PhnC_transporter A 99.9 2.3E-25 5E-30 189.7 11.0 143 3-154 28-215 (241)
79 PRK11629 lolD lipoprotein tran 99.9 2E-25 4.4E-30 189.5 10.3 138 3-149 36-211 (233)
80 PRK13650 cbiO cobalt transport 99.9 2.8E-25 6.2E-30 193.8 11.4 156 3-168 34-224 (279)
81 TIGR01166 cbiO cobalt transpor 99.9 7.1E-25 1.5E-29 180.6 13.2 130 3-137 19-184 (190)
82 COG1137 YhbG ABC-type (unclass 99.9 1.4E-26 3E-31 189.1 2.8 158 2-168 30-223 (243)
83 PRK10908 cell division protein 99.9 3.3E-25 7.1E-30 186.9 11.2 144 3-155 29-208 (222)
84 PRK13636 cbiO cobalt transport 99.9 5.5E-26 1.2E-30 198.6 6.7 159 3-170 33-228 (283)
85 PRK11247 ssuB aliphatic sulfon 99.9 2.5E-25 5.5E-30 192.0 10.8 152 3-163 39-213 (257)
86 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3.3E-25 7.1E-30 189.3 11.3 144 3-155 28-207 (242)
87 cd03264 ABC_drug_resistance_li 99.9 2.6E-25 5.7E-30 186.0 10.5 143 4-156 27-201 (211)
88 PRK11300 livG leucine/isoleuci 99.9 2.2E-25 4.7E-30 191.6 10.2 143 3-154 32-224 (255)
89 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.8E-25 3.9E-30 194.0 9.8 145 3-156 51-233 (269)
90 cd03297 ABC_ModC_molybdenum_tr 99.9 3E-25 6.5E-30 186.1 10.8 145 3-156 24-204 (214)
91 TIGR03740 galliderm_ABC gallid 99.9 4.3E-25 9.4E-30 186.2 11.7 149 3-160 27-200 (223)
92 PRK13638 cbiO cobalt transport 99.9 1.2E-25 2.5E-30 195.3 8.5 157 3-168 28-220 (271)
93 PRK11248 tauB taurine transpor 99.9 8.4E-25 1.8E-29 188.5 13.7 146 3-157 28-202 (255)
94 cd03231 ABC_CcmA_heme_exporter 99.9 1.3E-24 2.7E-29 180.9 14.1 144 3-155 27-196 (201)
95 PRK11144 modC molybdate transp 99.9 2.4E-25 5.2E-30 200.2 10.3 157 3-168 25-213 (352)
96 PRK10895 lipopolysaccharide AB 99.9 4.5E-25 9.9E-30 188.2 11.5 149 3-160 30-213 (241)
97 PRK10070 glycine betaine trans 99.9 2.9E-25 6.2E-30 202.3 10.8 154 3-165 55-246 (400)
98 TIGR02211 LolD_lipo_ex lipopro 99.9 3.2E-25 6.9E-30 186.6 10.3 136 3-147 32-205 (221)
99 PRK11264 putative amino-acid A 99.9 4.5E-25 9.7E-30 189.1 11.3 145 3-156 30-216 (250)
100 PRK11831 putative ABC transpor 99.9 3.7E-25 8.1E-30 192.0 10.9 150 3-161 34-221 (269)
101 PRK13649 cbiO cobalt transport 99.9 1.7E-25 3.8E-30 195.0 8.9 152 3-163 34-224 (280)
102 TIGR02142 modC_ABC molybdenum 99.9 3.3E-25 7.2E-30 199.5 10.6 154 3-165 24-213 (354)
103 COG2884 FtsE Predicted ATPase 99.9 4E-25 8.7E-30 179.2 9.8 130 3-137 29-194 (223)
104 PRK13639 cbiO cobalt transport 99.9 2.3E-25 5E-30 193.9 9.0 156 3-167 29-220 (275)
105 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 8.2E-25 1.8E-29 186.1 11.9 137 3-148 28-197 (236)
106 PRK11607 potG putrescine trans 99.9 4.1E-25 8.9E-30 200.2 10.6 154 3-165 46-231 (377)
107 PRK15079 oligopeptide ABC tran 99.9 3.6E-25 7.8E-30 197.5 10.0 157 3-167 48-245 (331)
108 TIGR03415 ABC_choXWV_ATP choli 99.9 5.5E-25 1.2E-29 199.2 11.3 160 3-171 51-252 (382)
109 PRK10771 thiQ thiamine transpo 99.9 3E-25 6.5E-30 188.4 9.0 146 3-157 26-203 (232)
110 PRK15112 antimicrobial peptide 99.9 3.3E-25 7.1E-30 192.2 9.1 147 3-157 40-223 (267)
111 PRK13543 cytochrome c biogenes 99.9 2.9E-24 6.3E-29 180.4 14.5 144 3-155 38-208 (214)
112 TIGR03411 urea_trans_UrtD urea 99.9 8.5E-25 1.9E-29 186.5 11.4 144 3-156 29-214 (242)
113 TIGR01277 thiQ thiamine ABC tr 99.9 7.2E-25 1.6E-29 183.8 10.7 146 2-156 24-201 (213)
114 TIGR03608 L_ocin_972_ABC putat 99.9 1.7E-24 3.8E-29 180.1 12.8 134 3-145 25-195 (206)
115 PRK11124 artP arginine transpo 99.9 7.5E-25 1.6E-29 186.9 10.8 145 3-156 29-213 (242)
116 TIGR03771 anch_rpt_ABC anchore 99.9 6.6E-25 1.4E-29 185.5 10.3 145 3-156 7-185 (223)
117 TIGR03410 urea_trans_UrtE urea 99.9 7E-25 1.5E-29 185.7 10.5 143 3-154 27-202 (230)
118 COG0410 LivF ABC-type branched 99.9 3.3E-25 7.1E-30 184.7 8.1 163 2-171 29-224 (237)
119 cd03260 ABC_PstB_phosphate_tra 99.9 4.2E-25 9E-30 186.7 8.9 150 3-160 27-216 (227)
120 TIGR02769 nickel_nikE nickel i 99.9 6E-25 1.3E-29 190.2 10.0 146 3-156 38-223 (265)
121 PRK13548 hmuV hemin importer A 99.9 7.1E-25 1.5E-29 189.2 10.4 146 3-157 29-214 (258)
122 PRK10619 histidine/lysine/argi 99.9 4.9E-25 1.1E-29 189.9 9.3 145 3-155 32-223 (257)
123 PRK13645 cbiO cobalt transport 99.9 8E-25 1.7E-29 191.8 10.8 156 3-167 38-234 (289)
124 PRK11614 livF leucine/isoleuci 99.9 6.5E-25 1.4E-29 186.8 9.9 145 3-156 32-209 (237)
125 PRK13538 cytochrome c biogenes 99.9 3.4E-24 7.5E-29 178.6 14.0 136 3-147 28-192 (204)
126 PRK14250 phosphate ABC transpo 99.9 3.6E-25 7.7E-30 189.1 8.2 148 3-159 30-207 (241)
127 PRK13652 cbiO cobalt transport 99.9 6.2E-25 1.3E-29 191.4 9.6 156 3-167 31-221 (277)
128 TIGR01187 potA spermidine/putr 99.9 5.6E-25 1.2E-29 195.9 9.3 149 7-164 1-181 (325)
129 cd03267 ABC_NatA_like Similar 99.9 1.6E-24 3.6E-29 184.5 11.6 145 3-156 48-226 (236)
130 cd03257 ABC_NikE_OppD_transpor 99.9 1.6E-24 3.4E-29 183.0 11.3 145 3-156 32-218 (228)
131 COG1117 PstB ABC-type phosphat 99.9 2.9E-24 6.3E-29 177.2 12.3 143 3-153 34-217 (253)
132 TIGR02770 nickel_nikD nickel i 99.9 1.2E-24 2.6E-29 184.6 10.1 146 3-155 13-197 (230)
133 TIGR01978 sufC FeS assembly AT 99.9 1.6E-24 3.4E-29 184.7 10.9 142 3-152 27-213 (243)
134 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.8E-24 6.1E-29 184.4 12.4 145 3-156 26-188 (246)
135 PRK10584 putative ABC transpor 99.9 1.9E-24 4.1E-29 182.8 11.3 136 3-147 37-210 (228)
136 PRK10762 D-ribose transporter 99.9 1.9E-24 4.1E-29 202.6 12.3 152 3-163 31-220 (501)
137 PRK11308 dppF dipeptide transp 99.9 9.1E-25 2E-29 194.6 9.7 157 3-167 42-238 (327)
138 TIGR01189 ccmA heme ABC export 99.9 8.3E-24 1.8E-28 175.4 14.8 130 3-137 27-184 (198)
139 PRK15439 autoinducer 2 ABC tra 99.9 1.8E-24 3.8E-29 203.3 12.0 151 3-162 38-218 (510)
140 cd03215 ABC_Carb_Monos_II This 99.9 3.4E-24 7.4E-29 175.7 11.8 129 3-156 27-176 (182)
141 PRK10575 iron-hydroxamate tran 99.9 1.2E-24 2.7E-29 188.3 9.4 150 3-161 38-225 (265)
142 PRK13644 cbiO cobalt transport 99.9 1.3E-24 2.8E-29 189.2 9.2 150 3-162 29-213 (274)
143 PRK11231 fecE iron-dicitrate t 99.9 1.9E-24 4.1E-29 186.0 10.1 150 3-161 29-215 (255)
144 PRK13635 cbiO cobalt transport 99.9 1.3E-24 2.9E-29 189.6 9.3 151 3-163 34-219 (279)
145 TIGR03005 ectoine_ehuA ectoine 99.9 2E-24 4.3E-29 185.5 10.1 143 3-154 27-217 (252)
146 PRK13633 cobalt transporter AT 99.9 1.3E-24 2.7E-29 189.8 8.8 156 3-168 37-228 (280)
147 cd03230 ABC_DR_subfamily_A Thi 99.9 1.9E-24 4.1E-29 175.8 9.2 123 3-154 27-165 (173)
148 PRK13540 cytochrome c biogenes 99.9 2E-23 4.3E-28 173.5 15.5 130 3-137 28-184 (200)
149 PRK13546 teichoic acids export 99.9 3.4E-24 7.4E-29 185.7 11.3 151 3-162 51-221 (264)
150 COG4598 HisP ABC-type histidin 99.9 2.1E-24 4.5E-29 174.1 8.9 157 3-168 33-236 (256)
151 PRK09700 D-allose transporter 99.9 3.7E-24 8E-29 201.0 12.0 152 3-163 32-224 (510)
152 PRK13549 xylose transporter AT 99.9 4.5E-24 9.8E-29 200.3 12.6 156 3-167 32-226 (506)
153 PRK10253 iron-enterobactin tra 99.9 2.5E-24 5.4E-29 186.4 10.1 150 3-161 34-221 (265)
154 TIGR00972 3a0107s01c2 phosphat 99.9 1.9E-24 4E-29 185.1 9.0 147 3-157 28-216 (247)
155 TIGR03873 F420-0_ABC_ATP propo 99.9 4E-24 8.7E-29 184.1 11.1 150 3-161 28-214 (256)
156 PRK10938 putative molybdenum t 99.9 2E-24 4.3E-29 201.9 9.8 152 3-163 30-214 (490)
157 cd03300 ABC_PotA_N PotA is an 99.9 5.4E-24 1.2E-28 180.8 11.4 145 3-156 27-203 (232)
158 cd03299 ABC_ModC_like Archeal 99.9 3.8E-24 8.2E-29 182.1 10.3 143 3-154 26-200 (235)
159 cd03229 ABC_Class3 This class 99.9 2.2E-24 4.8E-29 176.2 8.5 131 3-154 27-171 (178)
160 cd03214 ABC_Iron-Siderophores_ 99.9 1.7E-24 3.8E-29 177.1 7.9 140 3-156 26-170 (180)
161 PRK11701 phnK phosphonate C-P 99.9 2.4E-24 5.1E-29 185.7 9.1 143 3-154 33-222 (258)
162 PRK13539 cytochrome c biogenes 99.9 2.4E-23 5.2E-28 174.0 14.6 130 3-137 29-184 (207)
163 PRK14247 phosphate ABC transpo 99.9 4.8E-24 1E-28 182.8 10.6 150 3-160 30-221 (250)
164 TIGR00968 3a0106s01 sulfate AB 99.9 4.9E-24 1.1E-28 181.7 10.5 145 3-156 27-203 (237)
165 PRK09700 D-allose transporter 99.9 3.8E-24 8.2E-29 201.0 10.8 150 3-161 290-486 (510)
166 PRK13648 cbiO cobalt transport 99.9 3.7E-24 8E-29 185.7 9.9 148 3-160 36-218 (269)
167 PRK13541 cytochrome c biogenes 99.9 3.3E-23 7.3E-28 171.5 15.1 130 3-137 27-180 (195)
168 TIGR02323 CP_lyasePhnK phospho 99.9 4.1E-24 8.9E-29 183.6 9.8 144 3-154 30-219 (253)
169 PRK15056 manganese/iron transp 99.9 2.5E-24 5.3E-29 187.1 8.4 150 3-162 34-219 (272)
170 PRK14242 phosphate transporter 99.9 3.1E-24 6.7E-29 184.3 8.8 146 3-156 33-220 (253)
171 cd03234 ABCG_White The White s 99.9 8.3E-24 1.8E-28 178.8 11.3 145 3-156 34-216 (226)
172 PRK10982 galactose/methyl gala 99.9 8.3E-24 1.8E-28 197.8 12.3 151 3-162 25-212 (491)
173 PRK13632 cbiO cobalt transport 99.9 2.8E-24 6E-29 186.7 8.3 149 3-161 36-219 (271)
174 cd03246 ABCC_Protease_Secretio 99.9 8.5E-24 1.8E-28 172.0 10.6 119 3-152 29-163 (173)
175 COG4586 ABC-type uncharacteriz 99.9 4.4E-24 9.5E-29 181.6 8.8 157 3-168 51-241 (325)
176 PRK13640 cbiO cobalt transport 99.9 3.9E-24 8.4E-29 186.9 8.8 160 3-172 34-231 (282)
177 PRK11022 dppD dipeptide transp 99.9 7E-24 1.5E-28 188.9 10.5 158 3-168 34-238 (326)
178 PRK10418 nikD nickel transport 99.9 9.1E-24 2E-28 181.7 10.8 145 3-154 30-211 (254)
179 PRK10261 glutathione transport 99.9 3.6E-24 7.8E-29 205.5 9.0 153 3-163 351-543 (623)
180 COG4175 ProV ABC-type proline/ 99.9 6.4E-24 1.4E-28 183.9 9.5 151 3-162 55-243 (386)
181 PRK14273 phosphate ABC transpo 99.9 4.6E-24 9.9E-29 183.4 8.4 146 3-156 34-221 (254)
182 PRK09473 oppD oligopeptide tra 99.9 5.6E-24 1.2E-28 189.8 9.0 153 3-163 43-241 (330)
183 cd03252 ABCC_Hemolysin The ABC 99.9 4.1E-24 8.8E-29 181.8 7.7 137 3-147 29-200 (237)
184 cd03213 ABCG_EPDR ABCG transpo 99.9 2E-23 4.2E-28 173.0 11.4 132 3-156 36-184 (194)
185 TIGR02982 heterocyst_DevA ABC 99.9 2E-23 4.3E-28 175.8 11.5 140 3-152 32-209 (220)
186 PRK11288 araG L-arabinose tran 99.9 1.7E-23 3.7E-28 196.2 12.2 151 3-162 31-218 (501)
187 PRK13547 hmuV hemin importer A 99.9 1E-23 2.2E-28 183.5 9.9 150 3-161 28-232 (272)
188 PRK13549 xylose transporter AT 99.9 8.9E-24 1.9E-28 198.3 10.3 150 3-161 289-482 (506)
189 PRK15439 autoinducer 2 ABC tra 99.9 1.1E-23 2.3E-28 197.9 10.8 147 3-158 290-477 (510)
190 cd03251 ABCC_MsbA MsbA is an e 99.9 6E-24 1.3E-28 180.3 8.2 139 3-152 29-204 (234)
191 PRK09984 phosphonate/organopho 99.9 1.2E-23 2.6E-28 181.7 10.2 146 3-157 31-226 (262)
192 COG1123 ATPase components of v 99.9 9.7E-24 2.1E-28 195.5 10.2 155 3-165 318-511 (539)
193 PRK10419 nikE nickel transport 99.9 1.6E-23 3.4E-28 181.8 11.0 151 3-162 39-230 (268)
194 PRK10762 D-ribose transporter 99.9 1.2E-23 2.6E-28 197.2 11.0 146 3-157 279-468 (501)
195 COG1129 MglA ABC-type sugar tr 99.9 1.3E-23 2.8E-28 193.5 10.9 156 3-167 35-228 (500)
196 TIGR02324 CP_lyasePhnL phospho 99.9 4.8E-23 1E-27 173.8 13.6 144 3-154 35-219 (224)
197 PRK15093 antimicrobial peptide 99.9 1.2E-23 2.6E-28 187.7 10.3 157 3-167 34-242 (330)
198 PRK11288 araG L-arabinose tran 99.9 1.2E-23 2.6E-28 197.1 10.6 144 3-155 280-467 (501)
199 PRK13545 tagH teichoic acids e 99.9 8.1E-24 1.8E-28 196.7 9.3 154 3-165 51-224 (549)
200 PRK14267 phosphate ABC transpo 99.9 1.7E-23 3.8E-28 179.7 10.6 147 3-157 31-221 (253)
201 PRK09544 znuC high-affinity zi 99.9 1.9E-23 4.2E-28 179.7 10.8 146 3-157 31-194 (251)
202 PRK10247 putative ABC transpor 99.9 5.1E-23 1.1E-27 174.1 13.1 136 3-147 34-201 (225)
203 PRK14268 phosphate ABC transpo 99.9 2.1E-23 4.5E-28 179.9 10.7 142 3-152 39-221 (258)
204 PRK13642 cbiO cobalt transport 99.9 1.2E-23 2.5E-28 183.4 9.0 150 3-162 34-218 (277)
205 COG3845 ABC-type uncharacteriz 99.9 4.8E-23 1E-27 187.1 13.3 150 3-160 31-216 (501)
206 PRK10261 glutathione transport 99.9 1.2E-23 2.6E-28 201.9 9.8 162 3-171 43-256 (623)
207 PRK10744 pstB phosphate transp 99.9 1E-23 2.3E-28 182.0 8.4 144 3-154 40-225 (260)
208 cd03233 ABC_PDR_domain1 The pl 99.9 2.7E-23 5.9E-28 173.1 10.5 140 3-157 34-193 (202)
209 PRK14241 phosphate transporter 99.9 2.5E-23 5.4E-28 179.3 10.7 144 3-154 31-217 (258)
210 cd03216 ABC_Carb_Monos_I This 99.9 1.6E-23 3.4E-28 169.0 8.7 124 3-155 27-153 (163)
211 cd03245 ABCC_bacteriocin_expor 99.9 1.3E-23 2.8E-28 176.7 8.5 145 3-156 31-210 (220)
212 PRK03695 vitamin B12-transport 99.9 2E-23 4.4E-28 179.1 9.8 148 3-158 23-207 (248)
213 PRK14235 phosphate transporter 99.9 1.5E-23 3.3E-28 181.7 8.9 147 2-156 45-234 (267)
214 PRK14251 phosphate ABC transpo 99.9 2.1E-23 4.6E-28 178.9 9.7 146 3-156 31-218 (251)
215 CHL00131 ycf16 sulfate ABC tra 99.9 3.2E-23 7E-28 177.8 10.8 140 3-150 34-217 (252)
216 PRK15134 microcin C ABC transp 99.9 1.3E-23 2.8E-28 198.2 9.0 155 3-164 36-237 (529)
217 cd03232 ABC_PDR_domain2 The pl 99.9 4.7E-23 1E-27 170.3 11.3 130 3-154 34-179 (192)
218 TIGR02633 xylG D-xylose ABC tr 99.9 2E-23 4.4E-28 195.5 10.2 148 3-159 287-478 (500)
219 PRK14245 phosphate ABC transpo 99.9 2E-23 4.4E-28 179.0 9.3 146 3-156 30-217 (250)
220 PRK14274 phosphate ABC transpo 99.9 1.6E-23 3.5E-28 180.6 8.7 147 3-157 39-227 (259)
221 TIGR02633 xylG D-xylose ABC tr 99.9 5.4E-23 1.2E-27 192.7 12.7 153 3-163 28-220 (500)
222 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.2E-23 2.7E-28 178.9 7.5 141 3-152 30-205 (238)
223 cd03254 ABCC_Glucan_exporter_l 99.9 1.8E-23 3.9E-28 176.8 8.3 137 3-147 30-201 (229)
224 TIGR03269 met_CoM_red_A2 methy 99.9 3E-23 6.4E-28 195.3 10.5 149 3-158 311-502 (520)
225 PRK14256 phosphate ABC transpo 99.9 3.6E-23 7.8E-28 177.7 10.0 148 3-158 31-221 (252)
226 COG1134 TagH ABC-type polysacc 99.9 2.5E-23 5.4E-28 174.9 8.7 157 3-166 54-229 (249)
227 COG4148 ModC ABC-type molybdat 99.9 1E-23 2.2E-28 179.9 6.3 168 3-179 25-224 (352)
228 PRK14270 phosphate ABC transpo 99.9 3.1E-23 6.7E-28 178.0 9.2 146 3-156 31-218 (251)
229 PRK14269 phosphate ABC transpo 99.9 3.8E-23 8.2E-28 177.0 9.7 142 3-152 29-209 (246)
230 cd03222 ABC_RNaseL_inhibitor T 99.9 5.6E-23 1.2E-27 168.0 10.1 111 3-153 26-141 (177)
231 PRK14262 phosphate ABC transpo 99.9 3.3E-23 7.1E-28 177.6 9.1 146 3-156 30-217 (250)
232 PRK14248 phosphate ABC transpo 99.9 2.7E-23 5.9E-28 180.1 8.6 144 3-154 48-233 (268)
233 cd03248 ABCC_TAP TAP, the Tran 99.9 4.1E-23 8.9E-28 174.4 9.1 135 3-147 41-212 (226)
234 PRK15134 microcin C ABC transp 99.9 2.2E-23 4.8E-28 196.6 8.3 146 3-158 313-500 (529)
235 cd03228 ABCC_MRP_Like The MRP 99.9 5E-23 1.1E-27 167.1 9.2 123 3-152 29-162 (171)
236 PRK14239 phosphate transporter 99.9 3.3E-23 7E-28 177.8 8.5 144 3-154 32-217 (252)
237 COG4525 TauB ABC-type taurine 99.9 1.3E-22 2.9E-27 165.4 11.6 137 4-149 33-198 (259)
238 TIGR01257 rim_protein retinal- 99.9 3.4E-23 7.4E-28 215.9 10.2 156 3-167 1966-2153(2272)
239 PRK09580 sufC cysteine desulfu 99.9 4.2E-23 9.1E-28 176.6 9.1 140 3-150 28-211 (248)
240 cd03217 ABC_FeS_Assembly ABC-t 99.9 4.2E-23 9.2E-28 171.7 8.6 133 3-153 27-174 (200)
241 PRK14259 phosphate ABC transpo 99.9 9.3E-23 2E-27 177.0 11.1 146 3-156 40-225 (269)
242 cd03253 ABCC_ATM1_transporter 99.9 5.7E-23 1.2E-27 174.5 9.5 137 3-147 28-199 (236)
243 PRK14237 phosphate transporter 99.9 4.8E-23 1E-27 178.6 9.1 144 3-154 47-232 (267)
244 PRK14263 phosphate ABC transpo 99.9 5.5E-23 1.2E-27 177.7 9.4 144 3-154 35-218 (261)
245 PRK15177 Vi polysaccharide exp 99.9 1.1E-22 2.5E-27 170.8 11.0 140 3-152 14-171 (213)
246 PRK14244 phosphate ABC transpo 99.9 9.6E-23 2.1E-27 174.9 10.4 144 3-154 32-218 (251)
247 cd03236 ABC_RNaseL_inhibitor_d 99.9 2.1E-22 4.5E-27 173.7 12.4 145 3-156 27-211 (255)
248 TIGR03269 met_CoM_red_A2 methy 99.9 5.9E-23 1.3E-27 193.3 9.6 150 3-161 27-246 (520)
249 PRK10982 galactose/methyl gala 99.9 8.4E-23 1.8E-27 191.0 10.5 147 3-157 275-464 (491)
250 PRK14258 phosphate ABC transpo 99.9 1.1E-22 2.5E-27 175.6 10.5 149 3-158 34-225 (261)
251 cd03247 ABCC_cytochrome_bd The 99.9 3.7E-23 8E-28 168.9 7.0 117 3-147 29-160 (178)
252 cd03290 ABCC_SUR1_N The SUR do 99.9 9.9E-23 2.1E-27 171.3 9.8 139 3-147 28-205 (218)
253 PRK14238 phosphate transporter 99.9 5.1E-23 1.1E-27 178.8 8.2 144 3-154 51-236 (271)
254 PRK14249 phosphate ABC transpo 99.9 9.1E-23 2E-27 175.1 9.6 146 3-156 31-218 (251)
255 COG2274 SunT ABC-type bacterio 99.9 5.5E-23 1.2E-27 198.2 9.2 159 3-170 500-693 (709)
256 cd03244 ABCC_MRP_domain2 Domai 99.9 6.6E-23 1.4E-27 172.5 8.3 137 3-147 31-201 (221)
257 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.6E-22 3.5E-27 168.7 10.4 131 3-147 35-187 (207)
258 PRK14240 phosphate transporter 99.9 1.1E-22 2.3E-27 174.5 9.5 144 3-154 30-215 (250)
259 PRK14272 phosphate ABC transpo 99.9 1.6E-22 3.5E-27 173.4 10.4 146 3-156 31-219 (252)
260 PRK14275 phosphate ABC transpo 99.9 1.7E-22 3.7E-27 176.9 10.4 147 3-157 66-254 (286)
261 PLN03211 ABC transporter G-25; 99.9 2.1E-22 4.6E-27 194.0 12.0 159 3-168 95-291 (659)
262 PRK14246 phosphate ABC transpo 99.9 2.1E-22 4.6E-27 173.7 10.4 144 3-154 37-222 (257)
263 PRK14253 phosphate ABC transpo 99.9 2.6E-22 5.7E-27 172.0 10.9 146 3-156 30-216 (249)
264 PRK14236 phosphate transporter 99.9 2.7E-22 5.8E-27 174.4 11.0 147 3-157 52-240 (272)
265 PRK14254 phosphate ABC transpo 99.9 2.1E-22 4.5E-27 176.3 10.3 143 3-153 66-248 (285)
266 TIGR01257 rim_protein retinal- 99.9 1.5E-22 3.2E-27 211.2 10.8 153 3-165 957-1141(2272)
267 COG4608 AppF ABC-type oligopep 99.9 1.9E-22 4.1E-27 172.3 9.3 141 3-159 40-185 (268)
268 PRK14243 phosphate transporter 99.9 1.2E-22 2.6E-27 175.8 8.2 144 3-154 37-220 (264)
269 cd03250 ABCC_MRP_domain1 Domai 99.9 3.6E-22 7.7E-27 166.3 10.2 137 3-147 32-191 (204)
270 PRK14255 phosphate ABC transpo 99.9 2.3E-22 5E-27 172.6 9.2 146 3-156 32-219 (252)
271 PRK14261 phosphate ABC transpo 99.9 3.1E-22 6.8E-27 171.9 9.7 144 3-154 33-218 (253)
272 COG1119 ModF ABC-type molybden 99.9 6.6E-22 1.4E-26 166.3 11.3 142 5-155 60-244 (257)
273 PRK13409 putative ATPase RIL; 99.9 5E-22 1.1E-26 189.3 12.0 145 3-157 366-527 (590)
274 PRK14271 phosphate ABC transpo 99.9 4E-22 8.6E-27 173.7 10.4 147 3-157 48-235 (276)
275 PRK14260 phosphate ABC transpo 99.9 4.2E-22 9.1E-27 171.8 10.4 144 3-154 34-219 (259)
276 PRK14265 phosphate ABC transpo 99.9 2.4E-22 5.3E-27 174.9 8.8 145 3-155 47-231 (274)
277 COG1101 PhnK ABC-type uncharac 99.9 4.5E-22 9.7E-27 164.4 9.6 157 4-167 34-232 (263)
278 COG4181 Predicted ABC-type tra 99.9 8E-22 1.7E-26 157.9 10.6 149 3-161 37-223 (228)
279 PRK13409 putative ATPase RIL; 99.9 3.9E-22 8.5E-27 190.0 10.3 144 3-156 100-283 (590)
280 PRK11176 lipid transporter ATP 99.9 3.5E-22 7.5E-27 190.2 8.8 135 3-145 370-540 (582)
281 COG0444 DppD ABC-type dipeptid 99.9 6.1E-22 1.3E-26 172.5 9.5 155 3-165 32-235 (316)
282 PRK14257 phosphate ABC transpo 99.9 6.3E-22 1.4E-26 176.5 9.6 145 3-155 109-295 (329)
283 PRK14252 phosphate ABC transpo 99.9 7.1E-22 1.5E-26 171.0 9.7 144 3-154 43-230 (265)
284 PRK11174 cysteine/glutathione 99.9 5.3E-22 1.1E-26 189.3 9.6 134 3-145 377-545 (588)
285 PRK14266 phosphate ABC transpo 99.9 9.4E-22 2E-26 168.6 10.1 142 3-152 30-213 (250)
286 PRK15064 ABC transporter ATP-b 99.9 9.7E-22 2.1E-26 185.5 10.8 148 3-161 28-229 (530)
287 cd03223 ABCD_peroxisomal_ALDP 99.9 1.6E-21 3.5E-26 157.7 10.5 119 3-152 28-155 (166)
288 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 4.8E-22 1E-26 192.8 8.6 133 3-145 480-646 (686)
289 cd03289 ABCC_CFTR2 The CFTR su 99.9 4E-22 8.8E-27 173.6 7.2 156 3-168 31-220 (275)
290 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 7.7E-22 1.7E-26 156.1 8.1 108 2-154 26-137 (144)
291 cd03288 ABCC_SUR2 The SUR doma 99.9 7.7E-22 1.7E-26 170.1 8.5 137 3-147 48-218 (257)
292 COG1123 ATPase components of v 99.9 9.2E-22 2E-26 182.4 9.5 158 3-168 36-239 (539)
293 PRK10938 putative molybdenum t 99.9 1.7E-21 3.7E-26 182.1 11.4 139 3-150 287-468 (490)
294 PRK14264 phosphate ABC transpo 99.9 1.6E-21 3.5E-26 172.2 10.5 143 3-153 72-268 (305)
295 PRK11160 cysteine/glutathione 99.9 8.4E-22 1.8E-26 187.6 9.1 154 3-180 367-554 (574)
296 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 4.6E-22 1E-26 193.5 7.4 134 3-146 506-674 (710)
297 TIGR01842 type_I_sec_PrtD type 99.9 1.8E-21 4E-26 184.1 10.8 134 3-145 345-515 (544)
298 TIGR03375 type_I_sec_LssB type 99.9 9.4E-22 2E-26 190.9 8.7 135 3-145 492-661 (694)
299 COG4133 CcmA ABC-type transpor 99.9 1.5E-20 3.3E-25 152.3 14.1 127 3-134 29-184 (209)
300 PRK10790 putative multidrug tr 99.9 9.9E-22 2.1E-26 187.6 8.3 135 3-145 368-536 (592)
301 TIGR00955 3a01204 The Eye Pigm 99.9 2.8E-21 6.1E-26 185.4 11.4 162 3-171 52-254 (617)
302 cd00267 ABC_ATPase ABC (ATP-bi 99.9 2.5E-21 5.5E-26 154.8 9.3 120 3-152 26-148 (157)
303 COG4172 ABC-type uncharacteriz 99.9 1.9E-21 4.1E-26 173.2 9.3 155 3-181 314-509 (534)
304 TIGR02868 CydC thiol reductant 99.9 3.8E-21 8.3E-26 181.2 11.8 131 3-137 362-526 (529)
305 COG4988 CydD ABC-type transpor 99.8 1.8E-21 3.9E-26 180.2 9.2 155 3-181 348-536 (559)
306 cd03238 ABC_UvrA The excision 99.8 4.1E-21 8.9E-26 156.9 10.3 128 3-153 22-157 (176)
307 PRK15064 ABC transporter ATP-b 99.8 1.5E-21 3.2E-26 184.2 8.8 140 3-154 346-505 (530)
308 COG0488 Uup ATPase components 99.8 1.8E-20 3.9E-25 175.7 15.5 136 3-148 30-217 (530)
309 TIGR01193 bacteriocin_ABC ABC- 99.8 9.8E-22 2.1E-26 191.2 7.2 134 3-145 501-670 (708)
310 TIGR01846 type_I_sec_HlyB type 99.8 2.5E-21 5.4E-26 188.0 9.2 136 3-146 484-654 (694)
311 PRK11819 putative ABC transpor 99.8 1.4E-20 3E-25 178.6 13.7 140 3-154 351-512 (556)
312 COG4161 ArtP ABC-type arginine 99.8 6E-20 1.3E-24 146.1 14.6 145 4-157 30-214 (242)
313 COG1132 MdlB ABC-type multidru 99.8 3.9E-21 8.4E-26 182.7 9.1 153 3-181 356-545 (567)
314 PRK13657 cyclic beta-1,2-gluca 99.8 3.5E-21 7.6E-26 183.7 8.7 135 3-145 362-531 (588)
315 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.7E-20 3.6E-25 178.0 13.2 139 3-154 349-510 (552)
316 cd03291 ABCC_CFTR1 The CFTR su 99.8 7.3E-21 1.6E-25 166.3 9.9 150 3-161 64-235 (282)
317 PRK11819 putative ABC transpor 99.8 9.3E-21 2E-25 179.8 11.3 142 3-157 34-233 (556)
318 TIGR02204 MsbA_rel ABC transpo 99.8 4.4E-21 9.6E-26 182.4 8.5 135 3-145 367-536 (576)
319 PRK10535 macrolide transporter 99.8 2.7E-20 5.8E-25 179.5 13.8 160 3-172 35-231 (648)
320 TIGR02203 MsbA_lipidA lipid A 99.8 5.9E-21 1.3E-25 181.3 8.9 131 3-137 359-525 (571)
321 PRK10636 putative ABC transpor 99.8 9.5E-21 2.1E-25 182.3 10.4 149 3-162 339-505 (638)
322 TIGR01192 chvA glucan exporter 99.8 7.3E-21 1.6E-25 181.5 9.4 135 3-145 362-531 (585)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.6E-20 3.5E-25 178.1 11.0 142 3-157 32-231 (552)
324 PRK10789 putative multidrug tr 99.8 7.5E-21 1.6E-25 180.9 8.8 135 3-145 342-511 (569)
325 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.6E-20 3.4E-25 178.2 10.7 137 3-145 369-532 (555)
326 TIGR02857 CydD thiol reductant 99.8 2.6E-20 5.7E-25 175.6 11.9 135 3-145 349-518 (529)
327 PRK11147 ABC transporter ATPas 99.8 3.3E-20 7.3E-25 178.5 12.7 143 3-157 346-510 (635)
328 PRK10522 multidrug transporter 99.8 2.3E-20 5E-25 176.7 10.7 132 3-137 350-507 (547)
329 TIGR00958 3a01208 Conjugate Tr 99.8 9.4E-21 2E-25 184.4 8.1 133 3-145 508-675 (711)
330 COG4167 SapF ABC-type antimicr 99.8 5.2E-20 1.1E-24 149.1 10.9 156 3-181 40-232 (267)
331 KOG0061 Transporter, ABC super 99.8 4.8E-20 1E-24 176.3 12.5 160 3-168 57-255 (613)
332 PRK10636 putative ABC transpor 99.8 3.1E-20 6.7E-25 178.8 11.2 143 3-157 28-219 (638)
333 COG4618 ArpD ABC-type protease 99.8 4.7E-20 1E-24 168.1 11.2 158 3-174 363-561 (580)
334 PLN03140 ABC transporter G fam 99.8 3.6E-20 7.8E-25 190.8 11.6 158 3-167 907-1104(1470)
335 PRK11147 ABC transporter ATPas 99.8 4.3E-20 9.3E-25 177.8 11.2 141 3-157 30-226 (635)
336 TIGR00956 3a01205 Pleiotropic 99.8 3.9E-20 8.5E-25 190.5 11.6 156 3-165 790-985 (1394)
337 KOG0059 Lipid exporter ABCA1 a 99.8 4.8E-20 1E-24 182.9 11.6 153 3-164 592-778 (885)
338 COG4674 Uncharacterized ABC-ty 99.8 7.5E-20 1.6E-24 149.3 10.2 158 4-185 33-231 (249)
339 COG4987 CydC ABC-type transpor 99.8 3.2E-20 7E-25 170.2 8.7 138 4-149 366-538 (573)
340 PLN03232 ABC transporter C fam 99.8 4.2E-20 9E-25 191.6 9.8 138 3-148 1263-1434(1495)
341 KOG0055 Multidrug/pheromone ex 99.8 4.4E-20 9.6E-25 182.8 8.0 145 3-162 380-565 (1228)
342 KOG0057 Mitochondrial Fe/S clu 99.8 4.3E-20 9.4E-25 169.6 7.4 128 4-136 380-542 (591)
343 PLN03073 ABC transporter F fam 99.8 6.4E-20 1.4E-24 178.1 8.5 137 3-154 536-694 (718)
344 COG0396 sufC Cysteine desulfur 99.8 5.1E-19 1.1E-23 147.6 12.4 158 3-181 31-227 (251)
345 COG4619 ABC-type uncharacteriz 99.8 6E-19 1.3E-23 141.0 12.2 131 3-137 30-191 (223)
346 PLN03130 ABC transporter C fam 99.8 9.6E-20 2.1E-24 189.6 9.5 162 3-173 1266-1461(1622)
347 TIGR00956 3a01205 Pleiotropic 99.8 1.5E-19 3.2E-24 186.3 10.5 159 3-168 88-295 (1394)
348 PTZ00265 multidrug resistance 99.8 1.3E-19 2.7E-24 187.2 9.6 136 3-145 1195-1420(1466)
349 PLN03140 ABC transporter G fam 99.8 1.9E-19 4.1E-24 185.6 9.7 162 3-171 192-425 (1470)
350 PF00005 ABC_tran: ABC transpo 99.8 1.4E-19 3.1E-24 140.9 6.4 105 3-109 12-137 (137)
351 KOG0058 Peptide exporter, ABC 99.8 2.5E-19 5.4E-24 169.2 9.3 150 2-181 494-684 (716)
352 TIGR00957 MRP_assoc_pro multi 99.8 2.5E-19 5.3E-24 186.2 10.0 154 3-180 1313-1500(1522)
353 PTZ00265 multidrug resistance 99.8 4.1E-19 8.9E-24 183.5 11.5 150 3-160 412-655 (1466)
354 TIGR00954 3a01203 Peroxysomal 99.8 1.1E-18 2.4E-23 168.6 12.5 138 3-152 479-646 (659)
355 PTZ00243 ABC transporter; Prov 99.8 4.4E-18 9.6E-23 176.9 16.9 135 3-145 1337-1506(1560)
356 COG4136 ABC-type uncharacteriz 99.8 8.4E-18 1.8E-22 132.3 11.6 137 3-147 29-198 (213)
357 TIGR01271 CFTR_protein cystic 99.8 2.1E-18 4.5E-23 179.0 9.4 156 3-167 453-630 (1490)
358 COG0488 Uup ATPase components 99.8 6.1E-18 1.3E-22 158.7 11.7 134 4-145 350-500 (530)
359 TIGR01271 CFTR_protein cystic 99.7 1.3E-18 2.9E-23 180.4 7.8 151 3-163 1246-1430(1490)
360 COG4615 PvdE ABC-type sideroph 99.7 1.4E-17 3.1E-22 148.2 12.4 156 3-165 350-529 (546)
361 cd03278 ABC_SMC_barmotin Barmo 99.7 3.9E-18 8.5E-23 141.7 8.3 131 4-145 24-177 (197)
362 PLN03073 ABC transporter F fam 99.7 6.3E-18 1.4E-22 164.3 10.4 148 3-161 204-418 (718)
363 COG4778 PhnL ABC-type phosphon 99.7 3.1E-18 6.8E-23 137.2 6.7 146 2-155 37-223 (235)
364 cd03272 ABC_SMC3_euk Eukaryoti 99.7 1.9E-17 4.2E-22 141.1 12.1 141 3-153 24-229 (243)
365 COG4107 PhnK ABC-type phosphon 99.7 2.3E-17 4.9E-22 132.9 10.6 135 3-145 33-213 (258)
366 cd03270 ABC_UvrA_I The excisio 99.7 2.3E-17 5E-22 139.8 9.9 86 60-154 118-208 (226)
367 cd03273 ABC_SMC2_euk Eukaryoti 99.7 1.4E-17 3.1E-22 143.0 8.7 133 3-137 26-226 (251)
368 TIGR00957 MRP_assoc_pro multi 99.7 1.2E-17 2.6E-22 173.6 9.4 157 3-168 665-845 (1522)
369 PLN03130 ABC transporter C fam 99.7 2E-17 4.3E-22 172.5 9.5 157 3-167 644-822 (1622)
370 KOG0055 Multidrug/pheromone ex 99.7 1.6E-17 3.4E-22 164.9 8.2 155 3-181 1017-1206(1228)
371 PTZ00243 ABC transporter; Prov 99.7 2.1E-17 4.5E-22 172.0 8.7 149 3-163 687-860 (1560)
372 PLN03232 ABC transporter C fam 99.7 4.2E-17 9.2E-22 169.4 10.5 158 3-168 644-823 (1495)
373 COG4138 BtuD ABC-type cobalami 99.7 8.7E-17 1.9E-21 129.5 8.8 163 3-173 26-221 (248)
374 cd03275 ABC_SMC1_euk Eukaryoti 99.7 7.7E-17 1.7E-21 138.3 8.1 130 4-137 24-216 (247)
375 COG4172 ABC-type uncharacteriz 99.7 5.7E-16 1.2E-20 138.5 12.8 162 3-188 37-246 (534)
376 cd03279 ABC_sbcCD SbcCD and ot 99.7 1.1E-16 2.5E-21 134.3 7.5 142 3-152 29-201 (213)
377 KOG0927 Predicted transporter 99.6 3.5E-16 7.6E-21 143.8 8.9 138 4-152 418-574 (614)
378 KOG0062 ATPase component of AB 99.6 4.5E-16 9.7E-21 142.3 9.2 131 5-149 109-263 (582)
379 cd03271 ABC_UvrA_II The excisi 99.6 7.3E-16 1.6E-20 133.3 9.6 78 59-145 149-233 (261)
380 cd03240 ABC_Rad50 The catalyti 99.6 2.5E-15 5.5E-20 125.5 12.5 123 4-137 24-180 (204)
381 KOG0065 Pleiotropic drug resis 99.6 2.4E-16 5.1E-21 156.9 6.5 158 3-166 818-1014(1391)
382 COG1245 Predicted ATPase, RNas 99.6 2.2E-15 4.7E-20 136.4 9.9 127 3-136 368-512 (591)
383 cd03274 ABC_SMC4_euk Eukaryoti 99.6 3.7E-16 7.9E-21 131.3 4.4 74 60-137 109-187 (212)
384 KOG0054 Multidrug resistance-a 99.6 1.3E-15 2.9E-20 154.0 9.2 152 4-179 1168-1353(1381)
385 KOG0056 Heavy metal exporter H 99.6 9.7E-15 2.1E-19 133.2 11.3 128 2-138 564-732 (790)
386 COG5265 ATM1 ABC-type transpor 99.6 1.6E-15 3.4E-20 136.1 6.1 128 3-136 290-454 (497)
387 COG1129 MglA ABC-type sugar tr 99.6 7.9E-15 1.7E-19 135.6 10.4 154 3-164 286-481 (500)
388 cd03280 ABC_MutS2 MutS2 homolo 99.6 1.7E-15 3.7E-20 125.9 5.1 120 4-155 30-161 (200)
389 COG1245 Predicted ATPase, RNas 99.6 1.1E-14 2.3E-19 132.0 9.4 127 3-137 101-270 (591)
390 cd03283 ABC_MutS-like MutS-lik 99.5 2.2E-14 4.7E-19 119.5 8.6 115 4-145 27-149 (199)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.5 8.2E-14 1.8E-18 115.9 11.7 134 4-149 23-181 (198)
392 KOG0054 Multidrug resistance-a 99.5 1.4E-14 2.9E-19 146.8 7.6 162 3-172 548-730 (1381)
393 COG4178 ABC-type uncharacteriz 99.5 3.9E-14 8.4E-19 133.5 10.2 129 4-136 421-570 (604)
394 KOG0066 eIF2-interacting prote 99.5 1.6E-13 3.4E-18 124.1 9.9 126 1-137 612-758 (807)
395 KOG0927 Predicted transporter 99.5 2.6E-13 5.7E-18 125.0 10.6 147 5-161 104-296 (614)
396 smart00534 MUTSac ATPase domai 99.5 7.6E-14 1.6E-18 114.8 6.0 125 4-151 1-128 (185)
397 KOG2355 Predicted ABC-type tra 99.4 3.8E-13 8.1E-18 111.1 8.3 153 5-164 43-228 (291)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.4 6.3E-13 1.4E-17 111.8 9.8 56 79-137 125-189 (213)
399 cd03243 ABC_MutS_homologs The 99.4 1.4E-13 3E-18 114.6 5.6 114 4-137 31-148 (202)
400 COG4170 SapD ABC-type antimicr 99.4 4.1E-13 8.9E-18 111.4 5.5 145 3-154 34-229 (330)
401 PRK00635 excinuclease ABC subu 99.4 1.7E-12 3.8E-17 134.7 10.5 87 61-157 791-884 (1809)
402 KOG0062 ATPase component of AB 99.4 8.7E-13 1.9E-17 121.0 7.3 122 5-137 393-536 (582)
403 cd03227 ABC_Class2 ABC-type Cl 99.4 3.6E-12 7.9E-17 102.5 9.0 110 4-137 23-138 (162)
404 cd03239 ABC_SMC_head The struc 99.3 3.3E-12 7.2E-17 104.5 7.9 50 87-137 103-155 (178)
405 TIGR00630 uvra excinuclease AB 99.3 6.1E-12 1.3E-16 124.9 10.0 78 61-145 810-892 (924)
406 COG2401 ABC-type ATPase fused 99.3 1.9E-11 4.2E-16 110.0 11.5 133 2-137 409-565 (593)
407 cd03281 ABC_MSH5_euk MutS5 hom 99.3 7.5E-12 1.6E-16 105.3 8.3 106 3-129 30-140 (213)
408 TIGR02858 spore_III_AA stage I 99.3 3E-11 6.4E-16 105.0 11.9 39 3-41 112-150 (270)
409 cd03282 ABC_MSH4_euk MutS4 hom 99.3 8.6E-12 1.9E-16 104.2 7.9 114 3-136 30-147 (204)
410 PRK00349 uvrA excinuclease ABC 99.3 9.9E-12 2.2E-16 123.7 9.4 76 61-145 812-894 (943)
411 cd03285 ABC_MSH2_euk MutS2 hom 99.3 2.5E-11 5.4E-16 102.7 9.0 124 3-154 31-162 (222)
412 KOG0060 Long-chain acyl-CoA tr 99.2 6.9E-11 1.5E-15 110.0 11.1 127 4-136 463-623 (659)
413 cd03284 ABC_MutS1 MutS1 homolo 99.2 7.1E-11 1.5E-15 99.5 9.0 109 4-137 32-150 (216)
414 PTZ00132 GTP-binding nuclear p 99.2 6.1E-11 1.3E-15 99.2 8.5 39 87-128 161-205 (215)
415 KOG0066 eIF2-interacting prote 99.2 4E-11 8.6E-16 108.7 7.0 159 5-174 293-499 (807)
416 COG3845 ABC-type uncharacteriz 99.2 3.7E-10 7.9E-15 103.6 11.9 154 3-164 285-483 (501)
417 TIGR01069 mutS2 MutS2 family p 99.2 7.5E-11 1.6E-15 115.7 7.9 115 3-136 323-441 (771)
418 KOG0064 Peroxisomal long-chain 99.1 2E-10 4.4E-15 106.0 8.0 124 4-137 510-666 (728)
419 cd03287 ABC_MSH3_euk MutS3 hom 99.1 4E-10 8.6E-15 95.4 9.0 117 3-137 32-151 (222)
420 cd03241 ABC_RecN RecN ATPase i 99.1 3E-10 6.5E-15 99.1 7.0 55 81-137 171-230 (276)
421 PF02463 SMC_N: RecF/RecN/SMC 99.0 1.4E-09 3E-14 91.3 10.3 69 59-137 123-196 (220)
422 KOG0065 Pleiotropic drug resis 99.0 2.8E-10 6E-15 114.3 5.6 163 3-171 142-349 (1391)
423 PRK08533 flagellar accessory p 99.0 3.6E-09 7.9E-14 90.0 11.5 117 3-137 25-160 (230)
424 COG3910 Predicted ATPase [Gene 99.0 1.1E-08 2.4E-13 83.7 12.9 126 3-137 38-185 (233)
425 cd01120 RecA-like_NTPases RecA 99.0 2.9E-09 6.2E-14 83.8 9.4 120 4-137 1-134 (165)
426 KOG0063 RNAse L inhibitor, ABC 99.0 2E-09 4.3E-14 97.5 8.4 129 3-136 368-513 (592)
427 PRK13695 putative NTPase; Prov 98.9 9.7E-10 2.1E-14 89.2 4.1 123 4-137 2-133 (174)
428 cd01131 PilT Pilus retraction 98.9 2.3E-08 4.9E-13 83.1 11.3 102 4-136 3-105 (198)
429 TIGR02788 VirB11 P-type DNA tr 98.9 1.5E-08 3.1E-13 89.9 9.7 123 3-159 145-267 (308)
430 cd01124 KaiC KaiC is a circadi 98.8 2.9E-08 6.4E-13 80.7 10.5 39 98-137 95-137 (187)
431 PRK00409 recombination and DNA 98.8 1.1E-08 2.4E-13 100.7 8.9 112 4-136 329-446 (782)
432 PRK00635 excinuclease ABC subu 98.8 3.9E-08 8.5E-13 102.9 13.1 57 80-137 1699-1759(1809)
433 PRK07721 fliI flagellum-specif 98.8 1.7E-08 3.6E-13 93.4 9.1 150 3-166 159-336 (438)
434 cd03242 ABC_RecF RecF is a rec 98.8 3.6E-08 7.9E-13 85.7 10.5 47 79-126 182-238 (270)
435 COG0178 UvrA Excinuclease ATPa 98.8 6.9E-08 1.5E-12 93.3 13.1 49 85-136 829-881 (935)
436 cd03286 ABC_MSH6_euk MutS6 hom 98.8 5.8E-08 1.2E-12 82.0 9.6 115 4-137 32-150 (218)
437 PRK06067 flagellar accessory p 98.7 1.3E-07 2.8E-12 80.2 10.4 36 2-38 25-61 (234)
438 PRK10416 signal recognition pa 98.6 1.9E-07 4.1E-12 83.2 10.0 108 2-124 114-223 (318)
439 smart00382 AAA ATPases associa 98.6 3.1E-07 6.6E-12 69.4 9.8 34 3-36 3-36 (148)
440 TIGR01420 pilT_fam pilus retra 98.6 3.5E-07 7.5E-12 82.3 11.6 103 3-136 123-226 (343)
441 TIGR00554 panK_bact pantothena 98.6 3E-08 6.5E-13 87.1 4.1 39 2-40 62-102 (290)
442 PF13304 AAA_21: AAA domain; P 98.6 9.7E-08 2.1E-12 79.2 6.9 55 82-137 238-296 (303)
443 COG1100 GTPase SAR1 and relate 98.6 1.8E-08 3.8E-13 84.0 1.9 122 3-126 6-137 (219)
444 cd01130 VirB11-like_ATPase Typ 98.5 9E-08 2E-12 78.6 4.8 35 3-37 26-60 (186)
445 PRK09270 nucleoside triphospha 98.5 7.1E-08 1.5E-12 81.8 3.9 37 2-38 33-70 (229)
446 cd01128 rho_factor Transcripti 98.5 5.2E-07 1.1E-11 77.7 8.9 64 87-177 146-211 (249)
447 KOG0063 RNAse L inhibitor, ABC 98.5 4.1E-07 8.9E-12 82.7 7.9 128 3-136 101-269 (592)
448 PRK14974 cell division protein 98.5 4.6E-06 9.9E-11 74.8 14.3 153 3-182 141-296 (336)
449 cd01125 repA Hexameric Replica 98.5 3.3E-06 7.2E-11 71.9 12.7 119 3-137 2-156 (239)
450 cd00820 PEPCK_HprK Phosphoenol 98.5 2E-07 4.4E-12 69.9 4.3 33 3-41 16-48 (107)
451 cd02025 PanK Pantothenate kina 98.4 1.5E-07 3.3E-12 79.5 3.3 36 4-39 1-38 (220)
452 TIGR03238 dnd_assoc_3 dnd syst 98.4 2.4E-07 5.1E-12 85.8 4.4 37 3-41 33-70 (504)
453 cd03115 SRP The signal recogni 98.4 5.1E-06 1.1E-10 67.0 11.8 38 3-40 1-38 (173)
454 PRK06793 fliI flagellum-specif 98.4 8.3E-07 1.8E-11 81.8 7.7 99 3-113 157-262 (432)
455 cd00009 AAA The AAA+ (ATPases 98.4 3.3E-06 7.1E-11 64.4 9.9 93 3-127 20-112 (151)
456 TIGR03015 pepcterm_ATPase puta 98.4 8.6E-06 1.9E-10 70.0 13.3 97 4-116 45-141 (269)
457 PRK14723 flhF flagellar biosyn 98.4 7.7E-06 1.7E-10 80.0 14.1 91 3-113 186-280 (767)
458 PRK00349 uvrA excinuclease ABC 98.4 4.3E-07 9.3E-12 91.0 5.5 87 61-157 471-563 (943)
459 PRK14722 flhF flagellar biosyn 98.4 5E-06 1.1E-10 75.4 11.9 92 3-114 138-233 (374)
460 TIGR00630 uvra excinuclease AB 98.4 3.7E-07 7.9E-12 91.3 4.9 86 62-157 470-561 (924)
461 PRK13898 type IV secretion sys 98.4 6.2E-06 1.3E-10 82.0 13.6 34 4-37 448-481 (800)
462 cd01881 Obg_like The Obg-like 98.4 2.9E-06 6.2E-11 67.6 9.1 19 7-25 1-19 (176)
463 TIGR00235 udk uridine kinase. 98.3 3.7E-07 8.1E-12 76.1 3.8 36 2-39 6-41 (207)
464 cd03112 CobW_like The function 98.3 4.2E-06 9E-11 67.1 9.6 24 4-27 2-25 (158)
465 cd02023 UMPK Uridine monophosp 98.3 4.3E-07 9.4E-12 75.0 3.8 34 4-39 1-34 (198)
466 PRK10078 ribose 1,5-bisphospho 98.3 6.7E-07 1.5E-11 73.4 4.9 35 1-38 1-35 (186)
467 TIGR00064 ftsY signal recognit 98.3 1.5E-05 3.3E-10 69.5 13.5 109 3-126 73-183 (272)
468 PF00448 SRP54: SRP54-type pro 98.3 5.3E-06 1.1E-10 68.9 9.3 155 2-182 1-157 (196)
469 PRK05399 DNA mismatch repair p 98.3 2.5E-06 5.4E-11 85.2 8.5 112 3-136 608-726 (854)
470 cd04104 p47_IIGP_like p47 (47- 98.3 1.1E-05 2.4E-10 66.7 11.0 34 3-36 2-35 (197)
471 smart00053 DYNc Dynamin, GTPas 98.2 1.2E-05 2.6E-10 68.9 11.0 31 4-34 28-60 (240)
472 PRK11889 flhF flagellar biosyn 98.2 2.7E-05 5.8E-10 71.1 13.6 38 3-40 242-279 (436)
473 PRK06995 flhF flagellar biosyn 98.2 3.4E-06 7.3E-11 78.9 7.9 38 3-40 257-296 (484)
474 cd01898 Obg Obg subfamily. Th 98.2 8.2E-06 1.8E-10 64.8 9.0 21 5-25 3-23 (170)
475 PRK09183 transposase/IS protei 98.2 5.9E-06 1.3E-10 71.5 8.6 98 3-136 103-202 (259)
476 PRK13891 conjugal transfer pro 98.2 5.9E-06 1.3E-10 82.6 9.8 70 88-164 679-752 (852)
477 PRK05703 flhF flagellar biosyn 98.2 1.8E-05 3.9E-10 73.2 12.3 101 3-124 222-326 (424)
478 PRK05480 uridine/cytidine kina 98.2 1.4E-06 3.1E-11 72.5 4.6 37 2-40 6-42 (209)
479 PRK14088 dnaA chromosomal repl 98.2 2E-05 4.2E-10 73.3 12.3 98 4-136 132-233 (440)
480 cd00880 Era_like Era (E. coli 98.2 8.3E-06 1.8E-10 62.7 8.2 77 98-181 44-120 (163)
481 TIGR03499 FlhF flagellar biosy 98.2 6.4E-06 1.4E-10 72.2 8.4 38 3-40 195-234 (282)
482 COG1618 Predicted nucleotide k 98.2 4.2E-06 9E-11 67.0 6.4 121 2-136 5-136 (179)
483 cd04163 Era Era subfamily. Er 98.2 3.5E-05 7.6E-10 60.0 11.7 23 3-25 4-26 (168)
484 PLN02796 D-glycerate 3-kinase 98.2 1.5E-06 3.2E-11 77.8 4.2 39 2-40 100-141 (347)
485 cd02026 PRK Phosphoribulokinas 98.2 1.5E-06 3.2E-11 75.8 4.0 33 4-36 1-33 (273)
486 PLN02318 phosphoribulokinase/u 98.2 2.7E-06 6E-11 80.8 5.9 38 2-40 65-102 (656)
487 PRK00089 era GTPase Era; Revie 98.2 1.5E-05 3.3E-10 69.7 10.3 23 3-25 6-28 (292)
488 PF00488 MutS_V: MutS domain V 98.2 8.2E-06 1.8E-10 69.7 8.3 50 87-136 111-162 (235)
489 TIGR01026 fliI_yscN ATPase Fli 98.2 1.1E-05 2.3E-10 74.9 9.6 147 3-165 164-340 (440)
490 PRK04296 thymidine kinase; Pro 98.2 1.1E-05 2.3E-10 66.6 8.7 111 1-137 1-113 (190)
491 PF13555 AAA_29: P-loop contai 98.2 1.6E-06 3.5E-11 58.6 3.1 27 4-30 25-51 (62)
492 PRK09825 idnK D-gluconate kina 98.2 2.2E-06 4.8E-11 69.9 4.5 33 3-39 4-36 (176)
493 PRK13830 conjugal transfer pro 98.2 8.3E-06 1.8E-10 81.2 9.2 51 90-147 646-698 (818)
494 PF13401 AAA_22: AAA domain; P 98.2 5.1E-06 1.1E-10 63.4 6.1 112 3-136 5-122 (131)
495 PF02421 FeoB_N: Ferrous iron 98.1 9.9E-06 2.1E-10 64.9 7.6 118 4-181 2-121 (156)
496 PTZ00035 Rad51 protein; Provis 98.1 3.3E-05 7E-10 69.4 11.3 36 3-38 119-161 (337)
497 PRK00300 gmk guanylate kinase; 98.1 2.6E-06 5.7E-11 70.5 3.9 26 2-27 5-30 (205)
498 TIGR01425 SRP54_euk signal rec 98.1 0.00016 3.5E-09 66.7 15.9 38 3-40 101-138 (429)
499 PRK06526 transposase; Provisio 98.1 7.6E-06 1.6E-10 70.7 6.6 97 3-136 99-197 (254)
500 TIGR01360 aden_kin_iso1 adenyl 98.1 1.4E-06 3.1E-11 70.7 2.0 32 3-34 4-38 (188)
No 1
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=100.00 E-value=2e-55 Score=364.22 Aligned_cols=234 Identities=46% Similarity=0.841 Sum_probs=216.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026589 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
|+|+++||||+||||||+|..+..++...++++.++|+||++++.+|++..+|++.++++++|++.++||||+.++|+++
T Consensus 1 m~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~ 80 (290)
T KOG1533|consen 1 MPFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEY 80 (290)
T ss_pred CCcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
+..+. .|+...+-.. ...|+|||+|+|+++++++....+++++|.+.+.+++.|+++|+|.|++|++|+|.+++++.+
T Consensus 81 l~~~i-dwl~~~l~~~-~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~t 158 (290)
T KOG1533|consen 81 LEANI-DWLLEKLKPL-TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLAT 158 (290)
T ss_pred HHhhh-HHHHHHhhhc-cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHH
Confidence 99999 9999888763 668999999999999999999989999999899999999999999999999999999999999
Q ss_pred HHhhCCCeeeeccccccccchhh----hhhhcc-cChHHHHHHhhh-ccchhHHHHHHHHHHHHhhCCCceeEEeeccCC
Q 026589 161 MVQLELPHVNILSKMDLVTNKKE----IEDYLN-PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE 234 (236)
Q Consensus 161 ~i~~~~p~i~vlsk~dll~~~~~----l~~~~~-~~~~~l~~~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 234 (236)
|+.++.||+||+||+|++++++. ++.|.+ +|..+|...++. +..+||+|||++||++|+||+||+|+|||++|+
T Consensus 159 Ml~melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nk 238 (290)
T KOG1533|consen 159 MLHMELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNK 238 (290)
T ss_pred HHhhcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCH
Confidence 99999999999999999998753 344433 466677766654 445799999999999999999999999999999
Q ss_pred CC
Q 026589 235 SR 236 (236)
Q Consensus 235 ~~ 236 (236)
||
T Consensus 239 eS 240 (290)
T KOG1533|consen 239 ES 240 (290)
T ss_pred HH
Confidence 86
No 2
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=100.00 E-value=6.7e-55 Score=356.05 Aligned_cols=233 Identities=66% Similarity=1.198 Sum_probs=219.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026589 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
|+|.+.++||+||||||+|+.|..+....++++.++|+||+++.+.|+..+++||.|+++++|+.+.+||||++++|+++
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEy 81 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEY 81 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
+..++ .|+...+..+ +.+|+|||+|+|+++++|..+++++++.+++.+.+++.|+++|+.++.|..+|+|+++.++++
T Consensus 82 l~~Nl-dwL~~~~Gd~-eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsA 159 (273)
T KOG1534|consen 82 LLENL-DWLEEEIGDV-EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSA 159 (273)
T ss_pred HHHHH-HHHHhhccCc-cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHH
Confidence 99999 9999988765 889999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHhhCCCeeeeccccccccc--hhhhhhhcccChHHHHH--HhhhccchhHHHHHHHHHHHHhhCCCceeEEeeccCCCC
Q 026589 161 MVQLELPHVNILSKMDLVTN--KKEIEDYLNPESQFLLS--ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESR 236 (236)
Q Consensus 161 ~i~~~~p~i~vlsk~dll~~--~~~l~~~~~~~~~~l~~--~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (236)
|+.+++|||||+||.||++. ++.+++|++++...+.+ +.+... +||.+|++.++++++|||||+|+|+|.+||||
T Consensus 160 Mi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s-~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeS 238 (273)
T KOG1534|consen 160 MISLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRS-PKFKKLTKCIAQLVDDYSMVNFLPLDSSDEES 238 (273)
T ss_pred HHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhccccccccc-HHHHHHHHHHHHHhccccceeeeecCCCCHHH
Confidence 99999999999999999985 34899999998776653 444433 69999999999999999999999999999986
No 3
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=100.00 E-value=2.3e-45 Score=313.24 Aligned_cols=221 Identities=52% Similarity=0.890 Sum_probs=172.4
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhhhcHH
Q 026589 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD 86 (236)
Q Consensus 7 iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s 86 (236)
|+||+||||||+|+.+..++...+.++.+.|+||+++..+|++++||||.++++++|+++++||||+..+|++++..++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~- 79 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI- 79 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCC
Q 026589 87 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (236)
Q Consensus 87 ~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~ 166 (236)
.|+...+... +++|+|+|.|||++.++++..++.+++.|++ +.++++||++|++.+.++.+|++.++++++.|+++++
T Consensus 80 d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~l 157 (238)
T PF03029_consen 80 DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLEL 157 (238)
T ss_dssp HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCC
Confidence 9998888655 7799999999999999999999889999976 7788899999999999999999999999999999999
Q ss_pred Ceeeeccccccccch--hhhhhhcccChHHHHHHhhhccchhHHHHHHHHHHHHhhCCCc-eeEEeeccCCCC
Q 026589 167 PHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLDLRKESR 236 (236)
Q Consensus 167 p~i~vlsk~dll~~~--~~l~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 236 (236)
|+++|+||+|++++. ..++++.+ .+.+...++.. ++++++++++++++|+++ +|+|++++|+++
T Consensus 158 P~vnvlsK~Dl~~~~~~~~l~~~~d--~~~l~~~~~~~----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~ 224 (238)
T PF03029_consen 158 PHVNVLSKIDLLSKYLEFILEWFED--PDSLEDLLESD----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEG 224 (238)
T ss_dssp EEEEEE--GGGS-HHHHHHHHHHHS--HHHHHHHHHT-----HHHHHHHHHHHCCCCSSS---EE-BTTTTTT
T ss_pred CEEEeeeccCcccchhHHHHHHhcC--hHHHHHHHHHH----HHHHHHHHHHHHhhcCCCceEEEEECCChHH
Confidence 999999999999833 34555544 34454444432 899999999999999998 999999999875
No 4
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.98 E-value=5.7e-32 Score=229.25 Aligned_cols=215 Identities=30% Similarity=0.508 Sum_probs=187.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
+.++.++|.+||||||+++.|.+++....-..++.|+||+..+++|+.++||||.+.+.++|++++|||||+...|++.+
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF 98 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLF 98 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHH
Confidence 35889999999999999999999999988889999999999999999999999999999999999999999999999998
Q ss_pred hhcHH--HHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHH
Q 026589 82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (236)
Q Consensus 82 ~~~~s--~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (236)
..++. ..+.+.... +-+++|+|.|+|++.++|...-.-+...|+. ...+|++|.+|+.....|..|+|++|.+|+
T Consensus 99 ~tk~dqv~~~iek~~~--~~~~~liDTPGQIE~FtWSAsGsIIte~las-s~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 99 ATKFDQVIELIEKRAE--EFDYVLIDTPGQIEAFTWSASGSIITETLAS-SFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHhhc--ccCEEEEcCCCceEEEEecCCccchHhhHhh-cCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 88874 344444444 5679999999999999999887334455655 456678999999999999999999999999
Q ss_pred HHHhhCCCeeeeccccccccchhhhhhhcccChHHHHHHhhhccchhHHHHHHHHHHHHhhC
Q 026589 160 AMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY 221 (236)
Q Consensus 160 ~~i~~~~p~i~vlsk~dll~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~ 221 (236)
.+.+..+|.+.+|+|+|+..+.+.++|+ .|.+.|.+++++........|.+++.-.+++|
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm--~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeF 235 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWM--TDFEAFQEALNEAESSYMSNLTRSMSLMLEEF 235 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHH--HHHHHHHHHHHhhccchhHHhhhhHHHHHHHH
Confidence 9999999999999999999988666653 46788889998644556788999999888876
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=4.8e-32 Score=231.63 Aligned_cols=164 Identities=20% Similarity=0.312 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C------CcCCHHHhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELI----------- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~------~~~~i~~~i----------- 57 (236)
.+++|+||||||||||+|+|+|+++|.+|+|+++|.++.. +.++| | ..++++|.+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~ 108 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF 108 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence 5789999999999999999999999999999999987642 22333 2 233444443
Q ss_pred ---------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 58 ---------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 58 ---------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
.++++++.+|+.....+. .+.+++|.+ +|||++|++ +|++++|||||+ ||+.++.+++ +++++
T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la~r~--~~~LSGGerQrv~iArALaQ--~~~iLLLDEPTs~LDi~~Q~evl-~ll~~ 183 (258)
T COG1120 109 GRPSKEDEEIVEEALELLGLEHLADRP--VDELSGGERQRVLIARALAQ--ETPILLLDEPTSHLDIAHQIEVL-ELLRD 183 (258)
T ss_pred cCCCHhHHHHHHHHHHHhCcHHHhcCc--ccccChhHHHHHHHHHHHhc--CCCEEEeCCCccccCHHHHHHHH-HHHHH
Confidence 277889999998775554 456777755 999999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecccc
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~ 175 (236)
+++ +|+|+|+|. |+++-..+||+.++++..+.+....++-.|++..
T Consensus 184 l~~~~~~tvv~vl----HDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e 230 (258)
T COG1120 184 LNREKGLTVVMVL----HDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE 230 (258)
T ss_pred HHHhcCCEEEEEe----cCHHHHHHhCCEEEEEECCeEEeecCcchhcCHH
Confidence 985 699998885 8888899999988888877777777766666643
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.8e-31 Score=220.08 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCCCCcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~~~~~~~i~~~i~--------- 58 (236)
-+++||||+|||||||+|+|+++.+|++|+|.++|.++.. +++..+|+.|+-+++.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~ 108 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKL 108 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCC
Confidence 5789999999999999999999999999999999976531 4455577888888876
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
+.++++++||.... ..|+ ..+++|++ ++|||||++ +|++++|||||+ |||+...+++ +.+++|+
T Consensus 109 ~k~eA~~~A~~lL~~VGL~~ka-~~yP-~qLSGGQqQRVAIARALaM--~P~vmLFDEPTSALDPElv~EVL-~vm~~LA 183 (240)
T COG1126 109 SKAEAREKALELLEKVGLADKA-DAYP-AQLSGGQQQRVAIARALAM--DPKVMLFDEPTSALDPELVGEVL-DVMKDLA 183 (240)
T ss_pred CHHHHHHHHHHHHHHcCchhhh-hhCc-cccCcHHHHHHHHHHHHcC--CCCEEeecCCcccCCHHHHHHHH-HHHHHHH
Confidence 66788899998764 3333 24666654 999999999 999999999999 9999999999 9999999
Q ss_pred hCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
++|.|+++|+ |.+.-+.+.+++++....|.+..+.++
T Consensus 184 ~eGmTMivVT----HEM~FAr~VadrviFmd~G~iie~g~p 220 (240)
T COG1126 184 EEGMTMIIVT----HEMGFAREVADRVIFMDQGKIIEEGPP 220 (240)
T ss_pred HcCCeEEEEe----chhHHHHHhhheEEEeeCCEEEEecCH
Confidence 9999999886 888777777777766666655444444
No 7
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.3e-31 Score=224.88 Aligned_cols=154 Identities=16% Similarity=0.289 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC-CC--------cCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PV--------AMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----~~~~~-~~--------~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+|+|.|+++|.+|+|.+.|.+... ..++| || -.+|+|.+.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 4789999999999999999999999999999999876532 23566 44 235777664
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
++++++++|+.....+. ...+++|+. +.|||||+. +|++++||||++ +|+.++..++ ++++++
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~--i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~gvD~~~~~~i~-~lL~~l 185 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQ--IGELSGGQKQRVLLARALAQ--NPDLLLLDEPFTGVDVAGQKEIY-DLLKEL 185 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCc--ccccCcHHHHHHHHHHHhcc--CCCEEEecCCcccCCHHHHHHHH-HHHHHH
Confidence 78899999998765444 346777754 999999999 999999999999 9999999999 999999
Q ss_pred HhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhC
Q 026589 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
+++|++|++|+ |++..+..|++.+++.....+..+
T Consensus 186 ~~eg~tIl~vt----HDL~~v~~~~D~vi~Ln~~~~~~G 220 (254)
T COG1121 186 RQEGKTVLMVT----HDLGLVMAYFDRVICLNRHLIASG 220 (254)
T ss_pred HHCCCEEEEEe----CCcHHhHhhCCEEEEEcCeeEecc
Confidence 98899999997 888888888886666544444444
No 8
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=6e-29 Score=209.54 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=128.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------CCCCCCCcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~~~~~~~i~~~i~---------- 58 (236)
.+++++||+||||||++|+|+++++|++|+|+++|.++.. +.++.+|++|+.+++.
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k 107 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK 107 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCH
Confidence 4678999999999999999999999999999999988753 3445578999999986
Q ss_pred ------HHHHHHHhCCCCC-CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 ------LEDVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 ------~~~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++|+|+.+||+|. -..+|+. .++++++ +.+||||+. +|+++++|||+. |||.++..+- +.+.++++
T Consensus 108 ~~i~~r~~ELl~lvgL~p~~~~~RyP~-eLSGGQQQRVGv~RALAa--dP~ilLMDEPFgALDpI~R~~lQ-~e~~~lq~ 183 (309)
T COG1125 108 ERIKKRADELLDLVGLDPSEYADRYPH-ELSGGQQQRVGVARALAA--DPPILLMDEPFGALDPITRKQLQ-EEIKELQK 183 (309)
T ss_pred HHHHHHHHHHHHHhCCCHHHHhhcCch-hcCcchhhHHHHHHHHhc--CCCeEeecCCccccChhhHHHHH-HHHHHHHH
Confidence 8899999999984 4455663 4666543 999999999 999999999998 9999999998 88888876
Q ss_pred -CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhC
Q 026589 129 -RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 129 -~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
.|+|+++|+ |++.++.+..+++.++..+.+.-.
T Consensus 184 ~l~kTivfVT----HDidEA~kLadri~vm~~G~i~Q~ 217 (309)
T COG1125 184 ELGKTIVFVT----HDIDEALKLADRIAVMDAGEIVQY 217 (309)
T ss_pred HhCCEEEEEe----cCHHHHHhhhceEEEecCCeEEEe
Confidence 599999996 999999998876555555554333
No 9
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=9.1e-29 Score=217.20 Aligned_cols=157 Identities=15% Similarity=0.239 Sum_probs=126.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCC-------CCCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~-------~~~~~~i~~~i~----------- 58 (236)
-++|++||||||||||+|+|+|+++|++|+|.++|.++.. +.++ +++.+|++|++.
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~ 111 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE 111 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence 4799999999999999999999999999999999988753 1233 355778888764
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
++++++.++|.+.... ....++.|++ +.||.+|+. +|+++||||||+ ||+.++..++ +++++++++|
T Consensus 112 ~~~~~~~~~l~~~~L~~~~~~--~~~~lS~G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~-~~l~~l~~~g 186 (293)
T COG1131 112 EAEERIEELLELFGLEDKANK--KVRTLSGGMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIW-ELLRELAKEG 186 (293)
T ss_pred HHHHHHHHHHHHcCCchhhCc--chhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 5678999999974322 2356777765 999999999 999999999999 9999999999 9999998876
Q ss_pred -CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 131 -FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 131 -~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
.+|+++ +|.+.+...+|+.+++...|.+....+.
T Consensus 187 ~~tvlis----sH~l~e~~~~~d~v~il~~G~~~~~g~~ 221 (293)
T COG1131 187 GVTILLS----THILEEAEELCDRVIILNDGKIIAEGTP 221 (293)
T ss_pred CcEEEEe----CCcHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence 677554 6999999998876666666665555433
No 10
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-28 Score=201.49 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCCCCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~~~~~~~i~~~i~----------- 58 (236)
-+++|+|||||||||++|+|++++.|++|+|+++|.|... ...+++..+|++|++.
T Consensus 29 ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~ 108 (245)
T COG4555 29 EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK 108 (245)
T ss_pred eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhh
Confidence 5789999999999999999999999999999999988643 1233455678888875
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
++++++.++|......+. ..++.+++ +.||||+++ +|++++||||++ ||..+++.+. +++++++..|
T Consensus 109 ~~kari~~l~k~l~l~~~~~rRv--~~~S~G~kqkV~iARAlvh--~P~i~vlDEP~sGLDi~~~r~~~-dfi~q~k~eg 183 (245)
T COG4555 109 EIKARIAELSKRLQLLEYLDRRV--GEFSTGMKQKVAIARALVH--DPSILVLDEPTSGLDIRTRRKFH-DFIKQLKNEG 183 (245)
T ss_pred HHHHHHHHHHHHhChHHHHHHHH--hhhchhhHHHHHHHHHHhc--CCCeEEEcCCCCCccHHHHHHHH-HHHHHhhcCC
Confidence 678888888887644332 24555554 999999999 999999999999 9999999998 9999998889
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccc
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~ 180 (236)
+.++ ++||.+.+....|+ ++.++.|+..+-.
T Consensus 184 r~vi----FSSH~m~EvealCD---------------rvivlh~Gevv~~ 214 (245)
T COG4555 184 RAVI----FSSHIMQEVEALCD---------------RVIVLHKGEVVLE 214 (245)
T ss_pred cEEE----EecccHHHHHHhhh---------------eEEEEecCcEEEc
Confidence 8885 44699999999996 6666677766643
No 11
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.6e-28 Score=204.96 Aligned_cols=147 Identities=13% Similarity=0.143 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCCCCcCCHHHhhh---------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS--------------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~~~~~~i~~~i~--------------- 58 (236)
-+++|+||+|||||||+|+++|+.+|++|+|.++|..+.. ++....|..|+++|+.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~ 109 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE 109 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHH
Confidence 4789999999999999999999999999999999986532 2333345567777764
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEE
Q 026589 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (236)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (236)
++++++.+||....... + ..+++|++ ++|||+++. +|++|++|||++ ||..++..+...+++-+++.++|++
T Consensus 110 ~a~~~L~~VgL~~~~~~~-P-~qLSGGMrQRVaiARAL~~--~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl 185 (248)
T COG1116 110 RAKELLELVGLAGFEDKY-P-HQLSGGMRQRVAIARALAT--RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185 (248)
T ss_pred HHHHHHHHcCCcchhhcC-c-cccChHHHHHHHHHHHHhc--CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE
Confidence 77899999998765433 3 35778776 999999999 999999999998 9999999999555555556789999
Q ss_pred EEEecccccccchhhHhhhhHHH
Q 026589 135 AVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 135 ~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
+|+ |++.+.....++++++
T Consensus 186 lVT----Hdi~EAv~LsdRivvl 204 (248)
T COG1116 186 LVT----HDVDEAVYLADRVVVL 204 (248)
T ss_pred EEe----CCHHHHHhhhCEEEEe
Confidence 886 8888777666544443
No 12
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=6.5e-28 Score=201.82 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=128.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CCcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~------- 58 (236)
.+++|+||+|||||||+|.|.|+++|++|+|++.|.+... ..+++ +.+++|+|++.
T Consensus 35 ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~ 114 (263)
T COG1127 35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT 114 (263)
T ss_pred cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc
Confidence 5789999999999999999999999999999999988742 12222 34678888876
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+..-++.+||.+.....++. .++++++ ++||||++. +|+++++||||+ |||.+...+- +++++
T Consensus 115 ~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps-ELSGGM~KRvaLARAial--dPell~~DEPtsGLDPI~a~~~~-~LI~~ 190 (263)
T COG1127 115 KLPESLIRELVLMKLELVGLRGAAADLYPS-ELSGGMRKRVALARAIAL--DPELLFLDEPTSGLDPISAGVID-ELIRE 190 (263)
T ss_pred cCCHHHHHHHHHHHHHhcCCChhhhhhCch-hhcchHHHHHHHHHHHhc--CCCEEEecCCCCCCCcchHHHHH-HHHHH
Confidence 44566788998886666664 5777775 999999999 999999999999 9999998888 99999
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
|++ .|.|+++|+ |++......++++.+...+.+..+.|.
T Consensus 191 L~~~lg~T~i~VT----HDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 191 LNDALGLTVIMVT----HDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHhhCCEEEEEE----CChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 986 589998886 888888888876666555555555444
No 13
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.95 E-value=8.2e-28 Score=212.40 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 113 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAA 113 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHH
Confidence 5789999999999999999999999999999999988642 22333 34567777654
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++|
T Consensus 114 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~aL~~--~P~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~g 188 (306)
T PRK13537 114 AARALVPPLLEFAKLENKADAK--VGELSGGMKRRLTLARALVN--DPDVLVLDEPTTGLDPQARHLMW-ERLRSLLARG 188 (306)
T ss_pred HHHHHHHHHHHHcCCchHhcCc--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 34667788887533222 345666655 999999999 999999999999 9999999999 9999997778
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeee
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~ 170 (236)
.+|+++ +|.+.+...+|+.+++...+.+....+.-.
T Consensus 189 ~till~----sH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 189 KTILLT----THFMEEAERLCDRLCVIEEGRKIAEGAPHA 224 (306)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 888766 599999999999887777776655554433
No 14
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=200.58 Aligned_cols=158 Identities=17% Similarity=0.186 Sum_probs=128.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC--------CC------CC---CCcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NF------DY---PVAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~--------~~------~~---~~~~~i~~~i~------- 58 (236)
.+++|+|++|||||||+++++|+.+|++|+|.++|...... .+ +| .|..++++.+.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~ 113 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG 113 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC
Confidence 57899999999999999999999999999999999654321 11 11 33455666553
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
+.++++.+||.+.-..+++. .+++|+. ++|||||.. +|++||+||||+ ||...+.+++ +++.++++
T Consensus 114 ~~~~~~~i~~~L~~VgL~~~~l~R~P~-eLSGGQ~QRiaIARAL~~--~PklLIlDEptSaLD~siQa~Il-nlL~~l~~ 189 (252)
T COG1124 114 LSKSQQRIAELLDQVGLPPSFLDRRPH-ELSGGQRQRIAIARALIP--EPKLLILDEPTSALDVSVQAQIL-NLLLELKK 189 (252)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHhcCch-hcChhHHHHHHHHHHhcc--CCCEEEecCchhhhcHHHHHHHH-HHHHHHHH
Confidence 68899999999887777775 4777654 999999999 999999999999 9999999999 99999986
Q ss_pred -CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 129 -RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 129 -~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
.+.+.++|. |++.-...+|+++.++..+.+.-..|.
T Consensus 190 ~~~lt~l~Is----Hdl~~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 190 ERGLTYLFIS----HDLALVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred hcCceEEEEe----CcHHHHHHHhhheeeeeCCeEEEeech
Confidence 588888885 999888899988777776665544443
No 15
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.3e-27 Score=206.42 Aligned_cols=164 Identities=15% Similarity=0.158 Sum_probs=135.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-CC------cCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV------AMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~~------~~~i~~~i~------- 58 (236)
-+.||||++|||||||+|+++++-+|++|+|.++|.++.. +.+++ +| ..|+.+++.
T Consensus 33 eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag 112 (339)
T COG1135 33 EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG 112 (339)
T ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC
Confidence 4789999999999999999999999999999999977642 33443 33 345777765
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+||.+.. ..|+. .+++|++ ++|||||+. +|++|+.||||+ |||.+.+.++ ++++++
T Consensus 113 ~~k~ei~~RV~elLelVgL~dk~-~~yP~-qLSGGQKQRVaIARALa~--~P~iLL~DEaTSALDP~TT~sIL-~LL~~I 187 (339)
T COG1135 113 VPKAEIKQRVAELLELVGLSDKA-DRYPA-QLSGGQKQRVAIARALAN--NPKILLCDEATSALDPETTQSIL-ELLKDI 187 (339)
T ss_pred CCHHHHHHHHHHHHHHcCChhhh-ccCch-hcCcchhhHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHHHHH
Confidence 88899999999653 34443 4666654 999999999 999999999999 9999999999 999999
Q ss_pred Hh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecccc
Q 026589 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (236)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~ 175 (236)
++ .|.||++|+ |.+.-..++|+++.++..|.+.-..+..++|++.
T Consensus 188 n~~lglTIvlIT----HEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 188 NRELGLTIVLIT----HEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred HHHcCCEEEEEe----chHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 86 699999986 9999899999988888888877777777776543
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=4e-27 Score=197.77 Aligned_cols=149 Identities=20% Similarity=0.207 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (236)
-+++|+||+|||||||++++.|+.+|++|.|.++|.|... +.++| -+++|+.|++.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~ 111 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA 111 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc
Confidence 4689999999999999999999999999999999977642 23333 45678888876
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
++++++.+|+++.....++ ..+++|++ ++||||++. +|++++.||||. ||..+...++ +++++
T Consensus 112 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-~eLSGGqqQRVAIARAL~~--~P~iilADEPTgnLD~~t~~~V~-~ll~~ 187 (226)
T COG1136 112 GKSAGRRKRAAEELLEVLGLEDRLLKKKP-SELSGGQQQRVAIARALIN--NPKIILADEPTGNLDSKTAKEVL-ELLRE 187 (226)
T ss_pred CCChhHHHHHHHHHHHhcCChhhhccCCc-hhcCHHHHHHHHHHHHHhc--CCCeEEeeCccccCChHHHHHHH-HHHHH
Confidence 4567778899865443333 35666654 999999999 999999999998 9999999999 99999
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
+++ .|.++++|+ |+.. .+.++++.+....+
T Consensus 188 ~~~~~g~tii~VT----Hd~~-lA~~~dr~i~l~dG 218 (226)
T COG1136 188 LNKERGKTIIMVT----HDPE-LAKYADRVIELKDG 218 (226)
T ss_pred HHHhcCCEEEEEc----CCHH-HHHhCCEEEEEeCC
Confidence 976 488998885 5533 34456555444433
No 17
>PRK13768 GTPase; Provisional
Probab=99.94 E-value=1.5e-25 Score=192.95 Aligned_cols=230 Identities=32% Similarity=0.580 Sum_probs=193.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026589 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
|.+++++.||.||||||++..++..+...+.++.+.+.||+....+|.++.++++.++..+++...+++|++...++++.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~ 80 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDL 80 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHH
Confidence 78899999999999999999999998877778999999999888889888899999999999999999999999888877
Q ss_pred hhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
...+. .|+...+... +++++++|.|++.+++.++...+.+.+.+.+.+ +-++++++|+....++.++....+.....
T Consensus 81 ~~~~~-~~l~~~l~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~ 157 (253)
T PRK13768 81 LLTKA-DEIKEEIESL-DADYVLVDTPGQMELFAFRESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSV 157 (253)
T ss_pred HHHHH-HHHHHHHHhc-CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHH
Confidence 76666 6666666654 679999999999999988888877888876544 66678899998888898988888888888
Q ss_pred HHhhCCCeeeeccccccccch--hhhhhhcccChHHHHHHhhhccchhHHHHHHHHHHHHhhCCC-ceeEEeeccCCC
Q 026589 161 MVQLELPHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES 235 (236)
Q Consensus 161 ~i~~~~p~i~vlsk~dll~~~--~~l~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 235 (236)
+...+.|.+.|+||+|+++.. ..+.+++. +++.+...+....+.+ +++++++++.+++++. ..++|++..+++
T Consensus 158 ~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~ 233 (253)
T PRK13768 158 QLRLGLPQIPVLNKADLLSEEELERILKWLE-DPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGE 233 (253)
T ss_pred HHHcCCCEEEEEEhHhhcCchhHHHHHHHHh-CHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCc
Confidence 889999999999999999764 12333333 6667777777666656 8999999999999997 589999987764
No 18
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.94 E-value=1.8e-27 Score=209.74 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 99 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD 99 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 5789999999999999999999999999999999977532 12333 23456666653
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
++++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++|
T Consensus 100 ~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g 174 (302)
T TIGR01188 100 EAEERAEELLELFELGEAADRP--VGTYSGGMRRRLDIAASLIH--QPDVLFLDEPTTGLDPRTRRAIW-DYIRALKEEG 174 (302)
T ss_pred HHHHHHHHHHHHcCChhHhCCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 45678888887543222 345666655 999999999 999999999999 9999999999 9999997778
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
.+++++ +|.+.+...+|+.+++...+.+....+.
T Consensus 175 ~tvi~~----sH~~~~~~~~~d~v~~l~~G~i~~~g~~ 208 (302)
T TIGR01188 175 VTILLT----THYMEEADKLCDRIAIIDHGRIIAEGTP 208 (302)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 888766 4999888899988877766666554443
No 19
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.2e-27 Score=203.30 Aligned_cols=162 Identities=17% Similarity=0.185 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--------CCCCCC-CC-------cCCHHHhhh--------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PV-------AMDIRELIS-------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--------~~~~~~-~~-------~~~i~~~i~-------- 58 (236)
-.++|+||||||||||+++++|+++|++|.|.++|.+.. ++.++| +| ..+|.+.+.
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~ 110 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL 110 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCC
Confidence 368999999999999999999999999999999998754 123333 11 224444443
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
++++++.+|+....... ...+++++. ++||.+|++ +|+++||||||+ ||+.+++.++ +++++|+
T Consensus 111 ~~~e~~~rv~~~l~~vgl~~~~~r~--p~~LSGGqkqRvaIA~vLa~--~P~iliLDEPta~LD~~~~~~l~-~~l~~L~ 185 (235)
T COG1122 111 PREEIEERVAEALELVGLEELLDRP--PFNLSGGQKQRVAIAGVLAM--GPEILLLDEPTAGLDPKGRRELL-ELLKKLK 185 (235)
T ss_pred CHHHHHHHHHHHHHHcCchhhccCC--ccccCCcceeeHHhhHHHHc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHH
Confidence 77899999998663222 235666654 999999999 999999999999 9999999999 9999998
Q ss_pred hC-CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecc
Q 026589 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (236)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vls 173 (236)
++ |+|+|++. |++.....|++++++...+.+..+.++-.+++
T Consensus 186 ~~~~~tii~~t----Hd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 186 EEGGKTIIIVT----HDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hcCCCeEEEEe----CcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 76 68888775 99998999988776666666655554434333
No 20
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=3e-27 Score=211.53 Aligned_cols=160 Identities=16% Similarity=0.210 Sum_probs=125.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 147 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR 147 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHH
Confidence 5799999999999999999999999999999999987642 22333 33456766653
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
++++++.+++.+..... ...+++|++ +.||++++. +|+++||||||+ ||+.++..++ +++++++++|
T Consensus 148 ~~~~~~~~ll~~~~L~~~~~~~--~~~LS~G~kqrv~lA~aL~~--~P~lLiLDEPt~gLD~~~r~~l~-~~l~~l~~~g 222 (340)
T PRK13536 148 EIEAVIPSLLEFARLESKADAR--VSDLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARG 222 (340)
T ss_pred HHHHHHHHHHHHcCCchhhCCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCC
Confidence 34567788887543222 345666655 999999999 999999999999 9999999999 9999997778
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeee
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~v 171 (236)
.+|+++ +|.+.+...+|+.+++...+.+....+.-.+
T Consensus 223 ~tilis----SH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 223 KTILLT----THFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 888766 5999999999988887777766655544333
No 21
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.7e-27 Score=196.81 Aligned_cols=159 Identities=14% Similarity=0.193 Sum_probs=131.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CCcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~------- 58 (236)
.+++||||+|||||||+|+|+|+..|++|+|.++|.++.. ..+++ .+..++.+++.
T Consensus 31 E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~ 110 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT 110 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccc
Confidence 5789999999999999999999999999999999987743 22333 33445555543
Q ss_pred -----------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 59 -----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
+-+.++++|+.+...++ .+.+++++. ++|||+|++ +|++++-|||++ |||.+.+.+
T Consensus 111 s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr--a~~LSGGQQQRVaIARaL~Q--~pkiILADEPvasLDp~~a~~V 186 (258)
T COG3638 111 STWRSLFGLFSKEDKAQALDALERVGILDKAYQR--ASTLSGGQQQRVAIARALVQ--QPKIILADEPVASLDPESAKKV 186 (258)
T ss_pred hHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH--hccCCcchhHHHHHHHHHhc--CCCEEecCCcccccChhhHHHH
Confidence 66788889988765443 456777654 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeee
Q 026589 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (236)
Q Consensus 119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~ 170 (236)
| ++++++++ .|.|+++.. |.+.-+.+||++++-...+.+.++.|.-+
T Consensus 187 m-~~l~~in~~~g~Tvi~nL----H~vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 187 M-DILKDINQEDGITVIVNL----HQVDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred H-HHHHHHHHHcCCEEEEEe----chHHHHHHHHhhheEecCCcEEEeCChhh
Confidence 9 99999986 688886553 88888899999999999999999988844
No 22
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=2.7e-27 Score=198.58 Aligned_cols=167 Identities=14% Similarity=0.141 Sum_probs=132.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCCCCcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~~~~~~~i~~~i~--------- 58 (236)
.++++||||||||||++++|+|+++|++|+|.+.|.|+.. |....++++|+-|++.
T Consensus 31 ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~ 110 (250)
T COG0411 31 EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGL 110 (250)
T ss_pred eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhh
Confidence 5899999999999999999999999999999999988742 2333356677766653
Q ss_pred -------------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHH
Q 026589 59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (236)
Q Consensus 59 -------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~ 116 (236)
+.++++.+||.+..... ...++.+.+ +.||+||+. +|++|+||||.+ +.+....
T Consensus 111 ~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~--A~~LsyG~qR~LEIArALa~--~P~lLLLDEPaAGln~~e~~ 186 (250)
T COG0411 111 SGLLGRPRARKEEREARERARELLEFVGLGELADRP--AGNLSYGQQRRLEIARALAT--QPKLLLLDEPAAGLNPEETE 186 (250)
T ss_pred hhhhccccchhhHHHHHHHHHHHHHHcCCchhhcch--hhcCChhHhHHHHHHHHHhc--CCCEEEecCccCCCCHHHHH
Confidence 45677888998765333 222333332 999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccc
Q 026589 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 178 (236)
Q Consensus 117 ~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll 178 (236)
++. ++++++.+ .|.++++|- |++.-+-.+|+++.++..|.+..+.++-.|.+....+
T Consensus 187 ~l~-~~i~~i~~~~g~tillIE----HdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp~Vi 244 (250)
T COG0411 187 ELA-ELIRELRDRGGVTILLIE----HDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPRVI 244 (250)
T ss_pred HHH-HHHHHHHhcCCcEEEEEE----eccHHHhhhccEEEeccCCcCcccCCHHHHhcCHHhH
Confidence 999 99999987 468888885 8888888899888887777777777776666554443
No 23
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=6.2e-27 Score=188.70 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCC-------CCCCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~-------~~~~~~~i~~~i~------------ 58 (236)
-+++|+||+|||||||++.|+|+..|.+|.|+++|.|... +.+ ..+..+||.+++.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~ 105 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAE 105 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCHH
Confidence 5799999999999999999999999999999999987532 111 1233566777764
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
++.++.++|++....+.. ..++++.+ ++|||+++. +-++++||||++ |||.-+.++. .++.++.. ++
T Consensus 106 ~r~~v~~aa~~vGl~~~~~RLP--~~LSGGqRQRvALARclvR--~~PilLLDEPFsALdP~LR~eMl-~Lv~~l~~E~~ 180 (231)
T COG3840 106 QREKVEAAAAQVGLAGFLKRLP--GELSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRAEML-ALVSQLCDERK 180 (231)
T ss_pred HHHHHHHHHHHhChhhHhhhCc--cccCchHHHHHHHHHHHhc--cCCeEEecCchhhcCHHHHHHHH-HHHHHHHHhhC
Confidence 888999999987643332 24555544 999999999 999999999999 9999999999 99999985 68
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
.|+++|+ |..+|.....++++....+++....+.
T Consensus 181 ~TllmVT----H~~~Da~~ia~~~~fl~~Gri~~~g~~ 214 (231)
T COG3840 181 MTLLMVT----HHPEDAARIADRVVFLDNGRIAAQGST 214 (231)
T ss_pred CEEEEEe----CCHHHHHHhhhceEEEeCCEEEeeccH
Confidence 8998886 999999998887776666665554444
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.94 E-value=7e-27 Score=209.19 Aligned_cols=162 Identities=14% Similarity=0.152 Sum_probs=128.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-C------CcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~ 111 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 111 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999987632 23443 2 2456766654
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+|+.+..... ...++++++ ++|||+++. +|++||+||||+ ||+.++..++ ++++++
T Consensus 112 ~~~~~~~~~v~e~l~~vgL~~~~~~~--~~~LSgGqkQRV~IARAL~~--~P~iLLlDEPts~LD~~t~~~i~-~lL~~l 186 (343)
T TIGR02314 112 TPKDEIKRKVTELLALVGLGDKHDSY--PSNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTQSIL-ELLKEI 186 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 45778888997643222 245666654 999999999 999999999999 9999999999 999999
Q ss_pred Hh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecc
Q 026589 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (236)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vls 173 (236)
++ .|.++++++ |.+.....+|+.++++..+.+....+.-.+++
T Consensus 187 ~~~~g~tiiliT----H~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 187 NRRLGLTILLIT----HEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHhcCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 76 488998885 99988889998888877777766655555543
No 25
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.1e-27 Score=190.89 Aligned_cols=161 Identities=20% Similarity=0.278 Sum_probs=129.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------C-----------------CCCCCC-c
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------E-----------------NFDYPV-A 50 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------------~-----------------~~~~~~-~ 50 (236)
-++++|||||||||||+.+++.+++.++|+|+++|++.+. + .+||.+ .
T Consensus 28 ~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGR 107 (252)
T COG4604 28 GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGR 107 (252)
T ss_pred ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCC
Confidence 5789999999999999999999999999999999988743 1 122211 2
Q ss_pred CCHHHhhhHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 51 MDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 51 ~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.+-.|...++++++.++|.+...+. ++.+++|++ ..+|..+++ +.+|++||||.+ ||.....++| ++++++.
T Consensus 108 lt~eD~~~I~~aieyl~L~~l~dry--Ld~LSGGQrQRAfIAMVlaQ--dTdyvlLDEPLNNLDmkHsv~iM-k~Lrrla 182 (252)
T COG4604 108 LTKEDRRIINEAIEYLHLEDLSDRY--LDELSGGQRQRAFIAMVLAQ--DTDYVLLDEPLNNLDMKHSVQIM-KILRRLA 182 (252)
T ss_pred CchHHHHHHHHHHHHhcccchHHHh--HHhcccchhhhhhhheeeec--cCcEEEecCcccccchHHHHHHH-HHHHHHH
Confidence 3444444489999999999765443 577888876 889999999 999999999998 9999999999 9999998
Q ss_pred h-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeec
Q 026589 128 S-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (236)
Q Consensus 128 ~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vl 172 (236)
+ .|+|+++|. |.++-++.|.+.++....|++....|+-+++
T Consensus 183 ~el~KtiviVl----HDINfAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 183 DELGKTIVVVL----HDINFASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred HHhCCeEEEEE----ecccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence 6 599998885 6777778888877777777777776665544
No 26
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=1.4e-26 Score=194.34 Aligned_cols=145 Identities=14% Similarity=0.200 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-C------CcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| + +..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 109 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG 109 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999976521 23343 2 2346666543
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~ 184 (216)
T TIGR00960 110 VPPRDANERVSAALEKVGLEGKAHAL--PMQLSGGEQQRVAIARAIVH--KPPLLLADEPTGNLDPELSRDIM-RLFEEF 184 (216)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence 45577888887543222 235666654 999999999 999999999999 9999999999 899998
Q ss_pred HhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++|.++++++ |.......+++.++.
T Consensus 185 ~~~~~tii~vs----H~~~~~~~~~d~i~~ 210 (216)
T TIGR00960 185 NRRGTTVLVAT----HDINLVETYRHRTLT 210 (216)
T ss_pred HHCCCEEEEEe----CCHHHHHHhCCEEEE
Confidence 76788887775 777666666654433
No 27
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=8.1e-27 Score=207.43 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=117.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------------~~~~~~~~~~i~~~i~------------ 58 (236)
-+++++|||||||||++|+|+|+.+|++|+|.++|.++.. ++.+.+|+++|+++|.
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~ 111 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKA 111 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHH
Confidence 4688999999999999999999999999999999987642 3444478899999975
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-C
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R 129 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~ 129 (236)
+.++++.++|++.+.+. + ..++++++ ++|||||+. +|++|+||||.+ ||...+.++. .-++++++ .
T Consensus 112 ~i~~rv~e~L~lV~L~~~~~R~-p-~qLSGGQqQRVALARAL~~--~P~vLLLDEPlSaLD~kLR~~mr-~Elk~lq~~~ 186 (352)
T COG3842 112 EIKARVEEALELVGLEGFADRK-P-HQLSGGQQQRVALARALVP--EPKVLLLDEPLSALDAKLREQMR-KELKELQREL 186 (352)
T ss_pred HHHHHHHHHHHHcCchhhhhhC-h-hhhChHHHHHHHHHHHhhc--CcchhhhcCcccchhHHHHHHHH-HHHHHHHHhc
Confidence 77899999999875444 3 35666654 999999999 999999999998 9999999988 66777764 6
Q ss_pred CCcEEEEEecccccccchhhHhh
Q 026589 130 NFNVCAVYLLDSQFITDVTKFIS 152 (236)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~~ 152 (236)
|.|.|+|+ |+-.+.....+
T Consensus 187 giT~i~VT----HDqeEAl~msD 205 (352)
T COG3842 187 GITFVYVT----HDQEEALAMSD 205 (352)
T ss_pred CCeEEEEE----CCHHHHhhhcc
Confidence 99999886 88877777665
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.3e-26 Score=208.70 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++| +++.++++++.
T Consensus 31 e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~ 110 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE 110 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHH
Confidence 4789999999999999999999999999999999976532 22333 44567777764
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (236)
++++++.+++.+..... ...++++++ ++|||+++. +|+++|||||++ ||..++..+. +.++++.++ |
T Consensus 111 ~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~QRvalARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 185 (356)
T PRK11650 111 IEERVAEAARILELEPLLDRK--PRELSGGQRQRVAMGRAIVR--EPAVFLFDEPLSNLDAKLRVQMR-LEIQRLHRRLK 185 (356)
T ss_pred HHHHHHHHHHHcCChhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45678888997653322 235666654 999999999 999999999999 9999999999 888888764 8
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhC
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
.++++|+ |...+...+++.++++..+.+...
T Consensus 186 ~tii~vT----Hd~~ea~~l~D~i~vl~~G~i~~~ 216 (356)
T PRK11650 186 TTSLYVT----HDQVEAMTLADRVVVMNGGVAEQI 216 (356)
T ss_pred CEEEEEe----CCHHHHHHhCCEEEEEeCCEEEEE
Confidence 8998885 888888888876666655555433
No 29
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.94 E-value=9.2e-27 Score=206.08 Aligned_cols=147 Identities=18% Similarity=0.145 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------------~~~~~~~~~~i~~~i~------------ 58 (236)
-+++++||||||||||+|+|+|+.+|++|+|.++|.+... ++.+.+|++||++++.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~e 109 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAE 109 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHH
Confidence 3578999999999999999999999999999999977642 4455577889999986
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
++++.+.+++.+...... ..++++++ +++|||++. +|++++||||.+ ||...+..+. .-++++++ .|
T Consensus 110 i~~rV~eva~~L~l~~lL~r~P--~~LSGGQrQRVAlaRAlVr--~P~v~L~DEPlSnLDa~lR~~mr-~ei~~lh~~l~ 184 (338)
T COG3839 110 IDKRVKEVAKLLGLEHLLNRKP--LQLSGGQRQRVALARALVR--KPKVFLLDEPLSNLDAKLRVLMR-SEIKKLHERLG 184 (338)
T ss_pred HHHHHHHHHHHcCChhHHhcCc--ccCChhhHHHHHHHHHHhc--CCCEEEecCchhHhhHHHHHHHH-HHHHHHHHhcC
Confidence 778999999987654432 24666654 999999999 999999999999 9999998888 77888876 58
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHH
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASL 158 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~ 158 (236)
.|+|.|+ |+-.+.-...+++.++.
T Consensus 185 ~T~IYVT----HDq~EAmtladri~Vm~ 208 (338)
T COG3839 185 TTTIYVT----HDQVEAMTLADRIVVMN 208 (338)
T ss_pred CcEEEEc----CCHHHHHhhCCEEEEEe
Confidence 8888885 77666666555443333
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2e-26 Score=195.92 Aligned_cols=149 Identities=18% Similarity=0.209 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-C------CcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 106 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT 106 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc
Confidence 4789999999999999999999999999999999876431 22333 2 2346666542
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..++ +++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 181 (235)
T cd03261 107 RLSEEEIREIVLEKLEAVGLRGAEDLY--PAELSGGMKKRVALARALAL--DPELLLYDEPTAGLDPIASGVID-DLIRS 181 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHH
Confidence 34567788886543222 245666654 999999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
+++ .|.+++++. |...+...+++.++....+
T Consensus 182 ~~~~~~~tvi~vs----H~~~~~~~~~d~v~~l~~G 213 (235)
T cd03261 182 LKKELGLTSIMVT----HDLDTAFAIADRIAVLYDG 213 (235)
T ss_pred HHHhcCcEEEEEe----cCHHHHHHhcCEEEEEECC
Confidence 876 488887774 8877777777644444333
No 31
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.3e-26 Score=188.48 Aligned_cols=165 Identities=17% Similarity=0.223 Sum_probs=130.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------CCCCCCCcCCHHHhhh---------
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS--------- 58 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~~~~~~~i~~~i~--------- 58 (236)
+.+.+|+||||||||||+|.++|.+.|++|++.++|.++.. ++......++++|.+.
T Consensus 27 Gev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g 106 (259)
T COG4559 27 GEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSG 106 (259)
T ss_pred CcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccC
Confidence 35789999999999999999999999999999999988642 1111111235555553
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhc--HHHHHHHHHhcCCC----CCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLD----DDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~----p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
++++|...++....+..|. .++++ +++.+||.|++... +++|+|||||+ ||+..++..+ ++
T Consensus 107 ~~~~e~~~i~~~ala~~d~~~la~R~y~--~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl-~l 183 (259)
T COG4559 107 REPEEDERIAAQALAATDLSGLAGRDYR--TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL-RL 183 (259)
T ss_pred CCchhhHHHHHHHHHHcChhhhhccchh--hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH-HH
Confidence 6678888888776555544 35554 34999999997643 35999999999 9999999999 99
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecc
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vls 173 (236)
.++++++|..|+.|. |+++-.+.|+++++++..+++....++-.|++
T Consensus 184 aR~la~~g~~V~~VL----HDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 184 ARQLAREGGAVLAVL----HDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred HHHHHhcCCcEEEEE----ccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 999999898888885 88888999999999988888877777755554
No 32
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.5e-26 Score=192.43 Aligned_cols=145 Identities=16% Similarity=0.143 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-CC------cCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-PV------AMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-~~------~~~i~~~i~------------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAE 106 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHH
Confidence 5789999999999999999999999999999999876532 22333 22 345666543
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++++ .|
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 181 (213)
T cd03259 107 IRARVRELLELVGLEGLLNRY--PHELSGGQQQRVALARALAR--EPSLLLLDEPLSALDAKLREELR-EELKELQRELG 181 (213)
T ss_pred HHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence 34577788886532221 234666654 999999999 999999999999 9999999999 99999876 48
Q ss_pred CcEEEEEecccccccchhhHhhhhHH
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
.+|++++ |.......+++.++.
T Consensus 182 ~tii~~s----H~~~~~~~~~d~v~~ 203 (213)
T cd03259 182 ITTIYVT----HDQEEALALADRIAV 203 (213)
T ss_pred CEEEEEe----cCHHHHHHhcCEEEE
Confidence 8887774 777666666654443
No 33
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=2.3e-26 Score=191.71 Aligned_cols=144 Identities=18% Similarity=0.169 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC-CC-------cCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PV-------AMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----~~~~~-~~-------~~~i~~~i~------------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 106 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQ 106 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHH
Confidence 5789999999999999999999999999999999977521 22333 21 235666543
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEE
Q 026589 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++|.++++
T Consensus 107 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~ 181 (205)
T cd03226 107 AETVLKDLDLYALKERH--PLSLSGGQKQRLAIAAALLS--GKDLLIFDEPTSGLDYKNMERVG-ELIRELAAQGKAVIV 181 (205)
T ss_pred HHHHHHHcCCchhcCCC--chhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence 45678888887543222 235666654 999999999 999999999999 9999999999 999998767888877
Q ss_pred EEecccccccchhhHhhhhH
Q 026589 136 VYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 136 v~l~d~~~~~d~~~~~~~~l 155 (236)
+. |...+...+++.++
T Consensus 182 ~s----H~~~~~~~~~d~i~ 197 (205)
T cd03226 182 IT----HDYEFLAKVCDRVL 197 (205)
T ss_pred Ee----CCHHHHHHhCCEEE
Confidence 74 77776666665443
No 34
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.93 E-value=3.7e-26 Score=191.92 Aligned_cols=145 Identities=17% Similarity=0.252 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 111 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGD 111 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999876532 12222 23356666653
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++|
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~ 186 (218)
T cd03266 112 ELTARLEELADRLGMEELLDRR--VGGFSTGMRQKVAIARALVH--DPPVLLLDEPTTGLDVMATRALR-EFIRQLRALG 186 (218)
T ss_pred HHHHHHHHHHHHcCCHHHHhhh--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHCC
Confidence 45577888886532222 345666654 999999999 999999999999 9999999999 9999987678
Q ss_pred CcEEEEEecccccccchhhHhhhhHH
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
.+++++. |...+...+++.++.
T Consensus 187 ~tii~~t----H~~~~~~~~~d~i~~ 208 (218)
T cd03266 187 KCILFST----HIMQEVERLCDRVVV 208 (218)
T ss_pred CEEEEEe----CCHHHHHHhcCEEEE
Confidence 8888774 777777777764443
No 35
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.93 E-value=3.6e-26 Score=192.03 Aligned_cols=143 Identities=19% Similarity=0.230 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-C------CcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P------VAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~------~~~~i~~~i~------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 110 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA 110 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999876531 22333 2 2346665543
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++||||||+ ||+.++..+. +++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~ 185 (218)
T cd03255 111 GVPKKERRERAEELLERVGLGDRLNHY--PSELSGGQQQRVAIARALAN--DPKIILADEPTGNLDSETGKEVM-ELLRE 185 (218)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhcC--hhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 45677888887543222 235666654 999999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhhhhH
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
+++ .|.+++++. |...+.. +++.++
T Consensus 186 ~~~~~~~tii~~s----H~~~~~~-~~d~v~ 211 (218)
T cd03255 186 LNKEAGTTIVVVT----HDPELAE-YADRII 211 (218)
T ss_pred HHHhcCCeEEEEE----CCHHHHh-hhcEEE
Confidence 876 588887774 7766554 565443
No 36
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.93 E-value=2.2e-26 Score=203.02 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=120.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 110 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR 110 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHH
Confidence 5789999999999999999999999999999999976531 22333 23456666653
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
++++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++|
T Consensus 111 ~~~~~~~~ll~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g 185 (303)
T TIGR01288 111 EIEAVIPSLLEFARLESKADVR--VALLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARG 185 (303)
T ss_pred HHHHHHHHHHHHCCChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 33467777876532222 245666655 999999999 999999999999 9999999999 9999987778
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
.+++++ +|...+...+|+.+++...+.+....+.
T Consensus 186 ~til~~----sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 219 (303)
T TIGR01288 186 KTILLT----THFMEEAERLCDRLCVLESGRKIAEGRP 219 (303)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 888776 4888888888887777666665444433
No 37
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3.8e-26 Score=192.33 Aligned_cols=149 Identities=13% Similarity=0.202 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA 106 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHH
Confidence 5789999999999999999999999999999999876531 12333 22345655542
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~- 129 (236)
+.++++.+++.+.... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qr~~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~ 181 (220)
T cd03265 107 ERRERIDELLDFVGLLEAADR--LVKTYSGGMRRRLEIARSLVH--RPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEF 181 (220)
T ss_pred HHHHHHHHHHHHcCCHHHhhC--ChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhc
Confidence 4567788888653222 1345666654 899999999 999999999999 9999999999 999998765
Q ss_pred CCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
|.++++++ |...+...+++.++....+
T Consensus 182 ~~tvi~~t----H~~~~~~~~~d~i~~l~~G 208 (220)
T cd03265 182 GMTILLTT----HYMEEAEQLCDRVAIIDHG 208 (220)
T ss_pred CCEEEEEe----CCHHHHHHhCCEEEEEeCC
Confidence 78887775 8877777777644443333
No 38
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.93 E-value=3.6e-26 Score=194.19 Aligned_cols=147 Identities=17% Similarity=0.182 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-C------CcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~ 106 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGS 106 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccc
Confidence 4789999999999999999999999999999999876532 12333 2 2345555432
Q ss_pred -----------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 59 -----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 182 (236)
T cd03219 107 GLLLARARREEREARERAEELLERVGLADLADRP--AGELSYGQQRRLEIARALAT--DPKLLLLDEPAAGLNPEETEEL 182 (236)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCccchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHH
Confidence 34567777876532221 345666654 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHH
Q 026589 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~ 158 (236)
+ +++++++++|.+++++. |...+...+++.++...
T Consensus 183 ~-~~l~~~~~~~~tii~vs----H~~~~~~~~~d~i~~l~ 217 (236)
T cd03219 183 A-ELIRELRERGITVLLVE----HDMDVVMSLADRVTVLD 217 (236)
T ss_pred H-HHHHHHHHCCCEEEEEe----cCHHHHHHhCCEEEEEe
Confidence 9 89999876788887774 88777777776444433
No 39
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.9e-26 Score=201.62 Aligned_cols=167 Identities=20% Similarity=0.180 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-------------------------------CCCCCC-CC-
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------------------------AENFDY-PV- 49 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~-------------------------------~~~~~~-~~- 49 (236)
-+++|+||||||||||+++|+|+++|++|+|+++|.+.. ...++| +|
T Consensus 34 e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 113 (305)
T PRK13651 34 EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF 113 (305)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeC
Confidence 478999999999999999999999999999999875431 112333 22
Q ss_pred ------cCCHHHhhh----------------HHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEE
Q 026589 50 ------AMDIRELIS----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVF 104 (236)
Q Consensus 50 ------~~~i~~~i~----------------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lll 104 (236)
..++++++. +.++++.+||.+ .... ....++++++ ++||++++. +|+++||
T Consensus 114 ~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~~LSgGqkqrvalA~aL~~--~P~lLlL 189 (305)
T PRK13651 114 AEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR--SPFELSGGQKRRVALAGILAM--EPDFLVF 189 (305)
T ss_pred cccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC--ChhhCCHHHHHHHHHHHHHHh--CCCEEEE
Confidence 125666553 567788899963 2221 1245666654 999999999 9999999
Q ss_pred eCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccc
Q 026589 105 DCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 178 (236)
Q Consensus 105 DEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll 178 (236)
||||+ ||+.++..++ ++++++++.|.+|++++ |.+.....+++++++...+.+..+.+.-.+++..+++
T Consensus 190 DEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivt----Hd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~ 259 (305)
T PRK13651 190 DEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVT----HDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFL 259 (305)
T ss_pred eCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEe----eCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHH
Confidence 99999 9999999999 99999977788988775 8888888889888887777776666655555544443
No 40
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-26 Score=202.49 Aligned_cols=166 Identities=14% Similarity=0.163 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-CC-------cCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~~-------~~~i~~~i~----- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++| +| ..++.+++.
T Consensus 33 e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~ 112 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQN 112 (288)
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHH
Confidence 4789999999999999999999999999999999987531 12333 22 125555542
Q ss_pred -----------HHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 -----------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
+.++++.+++.+ .... ....++++++ ++||++++. +|+++||||||+ ||+.++..+. +++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~~LSgGqkqrvaiA~aL~~--~p~illLDEPt~gLD~~~~~~l~-~~l 187 (288)
T PRK13643 113 FGIPKEKAEKIAAEKLEMVGLADEFWEK--SPFELSGGQMRRVAIAGILAM--EPEVLVLDEPTAGLDPKARIEMM-QLF 187 (288)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhccC--CcccCCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHH
Confidence 456677888853 2111 1234666554 999999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecccccc
Q 026589 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (236)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dl 177 (236)
++++++|.+|++++ |++.+...+++.+++...+.+....+.-.++...++
T Consensus 188 ~~l~~~g~til~vt----Hd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~ 237 (288)
T PRK13643 188 ESIHQSGQTVVLVT----HLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237 (288)
T ss_pred HHHHHCCCEEEEEe----cCHHHHHHhCCEEEEEECCEEEEECCHHHHHcCHHH
Confidence 99977788988775 888888888988888777777666665555544443
No 41
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.93 E-value=3e-26 Score=208.86 Aligned_cols=161 Identities=19% Similarity=0.265 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CCcCCHHHhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELI----------- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-------~~~~~i~~~i----------- 57 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| +..+++++++
T Consensus 30 eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~ 109 (402)
T PRK09536 30 SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF 109 (402)
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccc
Confidence 4789999999999999999999999999999999977632 12222 2234555443
Q ss_pred ---------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 58 ---------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 58 ---------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
.++++++.+++.+..... ...+++|++ ++||++|+. +|+++||||||+ ||+.++..++ +++++
T Consensus 110 ~~~~~~~~~~v~~~le~vgl~~~~~~~--~~~LSgGerQRv~IArAL~~--~P~iLLLDEPtsgLD~~~~~~l~-~lL~~ 184 (402)
T PRK09536 110 DTWTETDRAAVERAMERTGVAQFADRP--VTSLSGGERQRVLLARALAQ--ATPVLLLDEPTASLDINHQVRTL-ELVRR 184 (402)
T ss_pred cCCCHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence 156788888887543222 345666654 999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeec
Q 026589 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vl 172 (236)
++++|.+++++. |.+.+..++++.+++...+.+....++-.++
T Consensus 185 l~~~g~TIIivs----Hdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 185 LVDDGKTAVAAI----HDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHhcCCEEEEEE----CCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 987788887774 9999999999988887777766555554444
No 42
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.93 E-value=3.7e-26 Score=193.67 Aligned_cols=148 Identities=17% Similarity=0.221 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-C------CcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLS 106 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCC
Confidence 4789999999999999999999999999999999876421 12333 2 2346666543
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++++.+++.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 107 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~ 181 (232)
T cd03218 107 KKEREEKLEELLEEFHITHLRKSK--ASSLSGGERRRVEIARALAT--NPKFLLLDEPFAGVDPIAVQDIQ-KIIKILKD 181 (232)
T ss_pred HHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34567777776432221 234666554 999999999 999999999999 9999999999 99999877
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHHHHH
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (236)
.+.+++++. |...+...+++.++....
T Consensus 182 ~~~tii~~s----H~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 182 RGIGVLITD----HNVRETLSITDRAYIIYE 208 (232)
T ss_pred CCCEEEEEe----CCHHHHHHhCCEEEEEEC
Confidence 788887774 877777777764444333
No 43
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.93 E-value=7.8e-26 Score=189.44 Aligned_cols=144 Identities=18% Similarity=0.240 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-CC------cCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV------AMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~~------~~~i~~~i~------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| ++ ..++++++.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG 108 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999976531 22333 22 345655542
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++||||||+ ||+.++..+. ++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 183 (214)
T TIGR02673 109 KKEREIQRRVGAALRQVGLEHKADAF--PEQLSGGEQQRVAIARAIVN--SPPLLLADEPTGNLDPDLSERIL-DLLKRL 183 (214)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 34567778886532111 235666654 999999999 999999999999 9999999999 999998
Q ss_pred HhCCCcEEEEEecccccccchhhHhhhhH
Q 026589 127 KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
+++|.++++++ |...+...+++.++
T Consensus 184 ~~~~~tii~~t----H~~~~~~~~~d~i~ 208 (214)
T TIGR02673 184 NKRGTTVIVAT----HDLSLVDRVAHRVI 208 (214)
T ss_pred HHcCCEEEEEe----CCHHHHHHhcCEEE
Confidence 76788887775 87777777666443
No 44
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.9e-26 Score=197.72 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc---CCCC-----CCCCC-------CCcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL---DPAA-----ENFDY-------PVAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~---d~~~-----~~~~~-------~~~~~i~~~i~--------- 58 (236)
-.++++|||||||||++|+|+|+..|+.|.|.++|. |..+ .+++| ++++||.++|.
T Consensus 29 e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~ 108 (345)
T COG1118 29 ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKER 108 (345)
T ss_pred cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccC
Confidence 468999999999999999999999999999999998 5432 33443 55778888875
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.++|+..+ ..|+. .++++++ +++|||++. +|++|+||||+. ||...+.++- +.++++
T Consensus 109 p~~~~~r~rv~elL~lvqL~~la-~ryP~-QLSGGQrQRVALARALA~--eP~vLLLDEPf~ALDa~vr~~lr-~wLr~~ 183 (345)
T COG1118 109 PSEAEIRARVEELLRLVQLEGLA-DRYPA-QLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRKL 183 (345)
T ss_pred CChhhHHHHHHHHHHHhcccchh-hcCch-hcChHHHHHHHHHHHhhc--CCCeEeecCCchhhhHHHHHHHH-HHHHHH
Confidence 78889999998765 33443 5666655 999999999 999999999998 9999999888 778887
Q ss_pred Hh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeec
Q 026589 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (236)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vl 172 (236)
.+ .|.++++|+ |+..+..+++++++.+.+|.|.--.|+..|.
T Consensus 184 ~~~~~~ttvfVT----HD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 184 HDRLGVTTVFVT----HDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHhhCceEEEEe----CCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 76 488888885 9999999999888887777765555554444
No 45
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.93 E-value=3.7e-26 Score=205.47 Aligned_cols=155 Identities=13% Similarity=0.132 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCC-------CCCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~-------~~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..++ .++..++++++.
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~ 110 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAE 110 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHH
Confidence 4789999999999999999999999999999999976532 2232 244667777764
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
++++++.++|.+..... ...++++++ ++|||+|+. +|+++|||||++ ||..++..+. +.++++.+ .|
T Consensus 111 ~~~~~~~~l~~l~L~~~~~~~--~~~LSgGq~QRvaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~~ 185 (353)
T TIGR03265 111 VAERVAELLDLVGLPGSERKY--PGQLSGGQQQRVALARALAT--SPGLLLLDEPLSALDARVREHLR-TEIRQLQRRLG 185 (353)
T ss_pred HHHHHHHHHHHcCCCchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 56788899998753332 245666654 999999999 999999999999 9999999999 88888876 48
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCC
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~ 166 (236)
.++++|+ |...+...+++.++++..+.+....
T Consensus 186 ~tvi~vT----Hd~~ea~~l~d~i~vl~~G~i~~~g 217 (353)
T TIGR03265 186 VTTIMVT----HDQEEALSMADRIVVMNHGVIEQVG 217 (353)
T ss_pred CEEEEEc----CCHHHHHHhCCEEEEEECCEEEEEc
Confidence 8888775 8888888888766665555554333
No 46
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.7e-26 Score=189.43 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=109.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC---CCCCCC-------CCcCCHHHhhh--------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---AENFDY-------PVAMDIRELIS-------------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~---~~~~~~-------~~~~~i~~~i~-------------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| ++..++++++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 106 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR 106 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH
Confidence 578999999999999999999999999999999997653 122222 23346666543
Q ss_pred --HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcE
Q 026589 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (236)
Q Consensus 59 --~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (236)
+.++++.+++.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++++.++
T Consensus 107 ~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~~lllDEP~~~LD~~~~~~~~-~~l~~~~~~~~ti 181 (210)
T cd03269 107 RRIDEWLERLELSEYANKR--VEELSKGNQQKVQFIAAVIH--DPELLILDEPFSGLDPVNVELLK-DVIRELARAGKTV 181 (210)
T ss_pred HHHHHHHHHcCChHHHhCc--HhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEE
Confidence 44567777876432221 245666654 899999999 999999999999 9999999999 8899887667788
Q ss_pred EEEEecccccccchhhHhhhhHH
Q 026589 134 CAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++ +|...+...+++.++.
T Consensus 182 i~~----sH~~~~~~~~~d~i~~ 200 (210)
T cd03269 182 ILS----THQMELVEELCDRVLL 200 (210)
T ss_pred EEE----CCCHHHHHHhhhEEEE
Confidence 776 4777766666664443
No 47
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.93 E-value=7.8e-26 Score=189.34 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CCcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~ 107 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG 107 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999876531 12333 22346666543
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~ 182 (214)
T cd03292 108 VPPREIRKRVPAALELVGLSHKHRAL--PAELSGGEQQRVAIARAIVN--SPTILIADEPTGNLDPDTTWEIM-NLLKKI 182 (214)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhCC--hhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence 34567777886432111 234555554 999999999 999999999999 9999999999 999998
Q ss_pred HhCCCcEEEEEecccccccchhhHhhhhH
Q 026589 127 KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
+++|.++++++ |.......+++.++
T Consensus 183 ~~~~~tiiivt----H~~~~~~~~~d~i~ 207 (214)
T cd03292 183 NKAGTTVVVAT----HAKELVDTTRHRVI 207 (214)
T ss_pred HHcCCEEEEEe----CCHHHHHHhCCEEE
Confidence 76788887774 77666666665443
No 48
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=8e-26 Score=189.61 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=133.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---CCCCC-------CCcCCHHHhhh--------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS-------------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---~~~~~-------~~~~~i~~~i~-------------- 58 (236)
-+.+++|||||||||.+|+|.|++.|++|+|.|+|.+... +.++| .+..++.|.+.
T Consensus 29 ~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~ 108 (300)
T COG4152 29 EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ 108 (300)
T ss_pred eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH
Confidence 5789999999999999999999999999999999988753 34566 34677877664
Q ss_pred --HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcE
Q 026589 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (236)
Q Consensus 59 --~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (236)
+..||+++++..+.... .+.++.+.. +.+..++++ +|+++|||||++ |||.+.+-+- +.+.+++.+|.||
T Consensus 109 ~~~~~wLer~~i~~~~~~k--Ik~LSKGnqQKIQfisaviH--ePeLlILDEPFSGLDPVN~elLk-~~I~~lk~~GatI 183 (300)
T COG4152 109 KKLQAWLERLEIVGKKTKK--IKELSKGNQQKIQFISAVIH--EPELLILDEPFSGLDPVNVELLK-DAIFELKEEGATI 183 (300)
T ss_pred HHHHHHHHhccccccccch--HHHhhhhhhHHHHHHHHHhc--CCCEEEecCCccCCChhhHHHHH-HHHHHHHhcCCEE
Confidence 78899999998765433 345665533 777788889 999999999999 9999987776 9999998899999
Q ss_pred EEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecc
Q 026589 134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (236)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vls 173 (236)
++ ++|.+..+...|+.+++...|...+..+...|-.
T Consensus 184 if----SsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 184 IF----SSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred EE----ecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 64 4699999999999999998888888777655543
No 49
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=4.4e-26 Score=191.93 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCC-------CCcCCHHHhhh---------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS--------------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~-------~~~~~i~~~i~--------------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 110 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARE 110 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHH
Confidence 5789999999999999999999999999999999976532 22333 22346665543
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcE
Q 026589 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (236)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i 133 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ ++++++.+ .|.++
T Consensus 111 ~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~ti 185 (220)
T cd03293 111 RAEELLELVGLSGFENAY--PHQLSGGMRQRVALARALAV--DPDVLLLDEPFSALDALTREQLQ-EELLDIWRETGKTV 185 (220)
T ss_pred HHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHcCCEE
Confidence 44577788886432211 234666654 999999999 999999999999 9999999999 98998864 57888
Q ss_pred EEEEecccccccchhhHhhhhHH
Q 026589 134 CAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++ |...+...+++.++.
T Consensus 186 ii~s----H~~~~~~~~~d~i~~ 204 (220)
T cd03293 186 LLVT----HDIDEAVFLADRVVV 204 (220)
T ss_pred EEEe----cCHHHHHHhCCEEEE
Confidence 7774 777766677664443
No 50
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.93 E-value=7.2e-26 Score=199.57 Aligned_cols=158 Identities=18% Similarity=0.264 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| ++..++.+++.
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~ 108 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ 108 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 5799999999999999999999999999999999987632 22333 33456666653
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
++++++.+|+.+..... ...+++|++ +.||++++. +|+++||||||+ ||+.++..++ ++++++++ +
T Consensus 109 ~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lliLDEPt~gLD~~~~~~l~-~~l~~~~~-~ 182 (301)
T TIGR03522 109 LLKQRVEEMIELVGLRPEQHKK--IGQLSKGYRQRVGLAQALIH--DPKVLILDEPTTGLDPNQLVEIR-NVIKNIGK-D 182 (301)
T ss_pred HHHHHHHHHHHHCCCchHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHhcC-C
Confidence 45677788887643332 245666654 999999999 999999999999 9999999999 89999864 6
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeee
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~ 170 (236)
.+|+++ +|.+.+...+|+++++...+.+....+.-.
T Consensus 183 ~tiii~----sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 183 KTIILS----THIMQEVEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred CEEEEE----cCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 777666 599999999998887777766665544433
No 51
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.93 E-value=9e-26 Score=188.40 Aligned_cols=145 Identities=14% Similarity=0.180 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 106 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR 106 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHH
Confidence 5789999999999999999999999999999999976531 12222 23456766653
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEE
Q 026589 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (236)
++++++.+++....... ...++++.+ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++|.++++
T Consensus 107 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~ 181 (208)
T cd03268 107 IDEVLDVVGLKDSAKKK--VKGFSLGMKQRLGIALALLG--NPDLLILDEPTNGLDPDGIKELR-ELILSLRDQGITVLI 181 (208)
T ss_pred HHHHHHHcCCHHHHhhh--HhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence 45677888886532222 244666654 999999999 999999999999 9999999999 899998777888877
Q ss_pred EEecccccccchhhHhhhhHH
Q 026589 136 VYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 136 v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+. |...+...+++.++.
T Consensus 182 ~t----H~~~~~~~~~d~v~~ 198 (208)
T cd03268 182 SS----HLLSEIQKVADRIGI 198 (208)
T ss_pred Ec----CCHHHHHHhcCEEEE
Confidence 74 877767676654433
No 52
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.93 E-value=1.2e-25 Score=190.75 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC--CCCC-------CCcCCHHHhhh---------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--NFDY-------PVAMDIRELIS--------------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~--~~~~-------~~~~~i~~~i~--------------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++... ...| .+..++.+++.
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~ 91 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSER 91 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 57899999999999999999999999999999998765321 1112 22345655542
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCC
Q 026589 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (236)
Q Consensus 59 ---~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~ 131 (236)
+.++++.+++...... ....++++++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++ .|.
T Consensus 92 ~~~~~~~l~~~~l~~~~~~--~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~~~~ 166 (230)
T TIGR01184 92 RAIVEEHIALVGLTEAADK--RPGQLSGGMKQRVAIARALSI--RPKVLLLDEPFGALDALTRGNLQ-EELMQIWEEHRV 166 (230)
T ss_pred HHHHHHHHHHcCCHHHHcC--ChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHhcCC
Confidence 3456777787643211 1245666654 999999999 999999999999 9999999999 88888876 478
Q ss_pred cEEEEEecccccccchhhHhhhhHHHHHHHHhhCC
Q 026589 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (236)
Q Consensus 132 ~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~ 166 (236)
+++++. |...+...+++.++....+.+....
T Consensus 167 tii~~s----H~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 167 TVLMVT----HDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred EEEEEe----CCHHHHHHhcCEEEEEeCCcEeccc
Confidence 887774 8888777888766666555554433
No 53
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.93 E-value=6.1e-26 Score=204.55 Aligned_cols=156 Identities=13% Similarity=0.193 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCC--ceEEEeccCCCC-----CCCC-------CCCcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~--G~i~i~~~d~~~-----~~~~-------~~~~~~i~~~i~---------- 58 (236)
-+++|+||||||||||+++|+|+.+|++ |+|.++|.++.. ..++ +++..++++++.
T Consensus 32 e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~ 111 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK 111 (362)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCH
Confidence 4789999999999999999999999999 999999977532 2222 245667777764
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026589 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (236)
Q Consensus 59 ------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (236)
++++++.++|.+..... ...++++++ ++|||+|+. +|+++|||||++ ||+..+.++. +.+++++++
T Consensus 112 ~~~~~~v~~~l~~~gL~~~~~~~--~~~LSgGq~QRvaLARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~ 186 (362)
T TIGR03258 112 ADIAERVADALKLVGLGDAAAHL--PAQLSGGMQQRIAIARAIAI--EPDVLLLDEPLSALDANIRANMR-EEIAALHEE 186 (362)
T ss_pred HHHHHHHHHHHHhcCCCchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHh
Confidence 56678888998653332 245666654 999999999 999999999999 9999999999 888888765
Q ss_pred --CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 130 --NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 130 --~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
|.++++|+ |...+...+++.++++..+.+....+
T Consensus 187 ~~g~til~vT----Hd~~ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 187 LPELTILCVT----HDQDDALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred CCCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 78888775 88888888887666655555543333
No 54
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.2e-26 Score=202.96 Aligned_cols=160 Identities=13% Similarity=0.152 Sum_probs=123.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CCcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~ 111 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG 111 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999987632 23333 22356666653
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+|+.+..... ...+++|++ +.||++++. +|+++||||||+ ||+.++..++ ++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~iLlLDEPts~LD~~~~~~l~-~~L~~l 186 (343)
T PRK11153 112 TPKAEIKARVTELLELVGLSDKADRY--PAQLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSIL-ELLKDI 186 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 44677888887542222 235666654 999999999 999999999999 9999999999 999998
Q ss_pred Hh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeee
Q 026589 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (236)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~v 171 (236)
++ .|.++++++ |.+.+...+|+.+++...+.+....+.-.+
T Consensus 187 ~~~~g~tiilvt----H~~~~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 187 NRELGLTIVLIT----HEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HHhcCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 76 488888775 888888888887777766666554444333
No 55
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=7.8e-26 Score=191.88 Aligned_cols=146 Identities=14% Similarity=0.181 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CCcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-------~~~~~i~~~i~------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 111 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG 111 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999987531 22333 22346666543
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++||||||+ ||+.++..+. ++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~~ 186 (233)
T cd03258 112 VPKAEIEERVLELLELVGLEDKADAY--PAQLSGGQKQRVGIARALAN--NPKVLLCDEATSALDPETTQSIL-ALLRDI 186 (233)
T ss_pred CCHHHHHHHHHHHHHHCCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCcCCHHHHHHHH-HHHHHH
Confidence 35567788886532221 234666554 999999999 999999999999 9999999999 999998
Q ss_pred HhC-CCcEEEEEecccccccchhhHhhhhHHH
Q 026589 127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
+++ |.+++++. |.......+++.++..
T Consensus 187 ~~~~~~tvii~s----H~~~~~~~~~d~i~~l 214 (233)
T cd03258 187 NRELGLTIVLIT----HEMEVVKRICDRVAVM 214 (233)
T ss_pred HHHcCCEEEEEe----CCHHHHHHhCCEEEEE
Confidence 764 88887774 7777667777644443
No 56
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7e-26 Score=204.84 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=117.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~ 109 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEE 109 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHH
Confidence 4789999999999999999999999999999999976531 22333 33557777654
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
+.++++.+++....... ...++++++ ++||++++. +|+++||||||+ ||+.++..+. ++++++.+ .|
T Consensus 110 ~~~~~~~~l~~lgL~~~~~~~--~~~LSgGq~QRvaLAraL~~--~P~lLLLDEPts~LD~~~~~~l~-~~L~~l~~~~g 184 (369)
T PRK11000 110 INQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG 184 (369)
T ss_pred HHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHhC
Confidence 45677888887543222 245666654 999999999 999999999999 9999999999 88898876 48
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
.++++++ |...+...+++.+++...+.+.
T Consensus 185 ~tvI~vT----Hd~~~~~~~~d~i~vl~~G~i~ 213 (369)
T PRK11000 185 RTMIYVT----HDQVEAMTLADKIVVLDAGRVA 213 (369)
T ss_pred CEEEEEe----CCHHHHHHhCCEEEEEECCEEE
Confidence 8888775 8888777888766665555543
No 57
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.93 E-value=8.4e-26 Score=203.49 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 20 ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~ 99 (363)
T TIGR01186 20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL 99 (363)
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999999999999999999987642 23333 34567887764
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+||....... ...++++++ ++|||+++. +|+++|+|||++ ||+.++..+. +++.+
T Consensus 100 ~~~~~~~~~~~~~~l~~vgL~~~~~~~--p~~LSGGq~QRV~lARAL~~--~p~iLLlDEP~saLD~~~r~~l~-~~l~~ 174 (363)
T TIGR01186 100 GWPEQERKEKALELLKLVGLEEYEHRY--PDELSGGMQQRVGLARALAA--EPDILLMDEAFSALDPLIRDSMQ-DELKK 174 (363)
T ss_pred CCCHHHHHHHHHHHHHhcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 45678888886543222 235666654 999999999 999999999999 9999999999 88888
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCC
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~ 166 (236)
+++ .|+|++++. |.+.+..++++.++++..+.+....
T Consensus 175 l~~~~~~Tii~vT----Hd~~ea~~~~drI~vl~~G~iv~~g 212 (363)
T TIGR01186 175 LQATLQKTIVFIT----HDLDEAIRIGDRIVIMKAGEIVQVG 212 (363)
T ss_pred HHHhcCCEEEEEe----CCHHHHHHhCCEEEEEeCCEEEeeC
Confidence 875 488998885 8888888888877776666654333
No 58
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.8e-26 Score=199.39 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-CC-------cCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~-------~~~i~~~i~------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 34 e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~ 113 (287)
T PRK13637 34 EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG 113 (287)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCC
Confidence 4789999999999999999999999999999999977532 22344 22 235666553
Q ss_pred ---------HHHHHHHhCCC--CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLG--PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (236)
Q Consensus 59 ---------~~~~l~~~~l~--~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~ 124 (236)
+.++++.+|+. ...... ...++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++
T Consensus 114 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~--~~~LSgGq~qrv~iAraL~~--~P~llllDEPt~gLD~~~~~~l~-~~l~ 188 (287)
T PRK13637 114 LSEEEIENRVKRAMNIVGLDYEDYKDKS--PFELSGGQKRRVAIAGVVAM--EPKILILDEPTAGLDPKGRDEIL-NKIK 188 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCchhhccCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCCHHHHHHHH-HHHH
Confidence 45778888996 222211 235666654 999999999 999999999999 9999999999 9999
Q ss_pred HHHhC-CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeec
Q 026589 125 HLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (236)
Q Consensus 125 ~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vl 172 (236)
+++++ |.+|++++ |.+.+...+++++++...+.+....+.-.++
T Consensus 189 ~l~~~~g~tvi~vt----Hd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 189 ELHKEYNMTIILVS----HSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHhcCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99764 88988775 8888888888877776666665554443333
No 59
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.93 E-value=1.4e-25 Score=187.63 Aligned_cols=144 Identities=19% Similarity=0.241 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-C------CcCCHHHhhh--------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P------VAMDIRELIS-------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~------~~~~i~~~i~-------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 106 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKG 106 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcC
Confidence 5789999999999999999999999999999999976521 22333 2 2345655542
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 107 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 181 (213)
T cd03262 107 MSKAEAEERALELLEKVGLADKADAY--PAQLSGGQQQRVAIARALAM--NPKVMLFDEPTSALDPELVGEVL-DVMKDL 181 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhhC--ccccCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHH
Confidence 34567777876532111 234555544 999999999 999999999999 9999999999 999998
Q ss_pred HhCCCcEEEEEecccccccchhhHhhhhH
Q 026589 127 KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
++.|.++++++ |...+...+++.++
T Consensus 182 ~~~~~tvi~~s----h~~~~~~~~~d~i~ 206 (213)
T cd03262 182 AEEGMTMVVVT----HEMGFAREVADRVI 206 (213)
T ss_pred HHcCCEEEEEe----CCHHHHHHhCCEEE
Confidence 77788887774 77777767665443
No 60
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.2e-26 Score=197.91 Aligned_cols=162 Identities=18% Similarity=0.157 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-CC-------cCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~~-------~~~i~~~i~----- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~ 113 (290)
T PRK13634 34 SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMN 113 (290)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHH
Confidence 4789999999999999999999999999999999986531 22344 22 235555542
Q ss_pred -----------HHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 -----------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
++++++.++|.+ ..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~lAraL~~--~P~llllDEPt~~LD~~~~~~l~-~~L 188 (290)
T PRK13634 114 FGVSEEDAKQKAREMIELVGLPEELLARS--PFELSGGQMRRVAIAGVLAM--EPEVLVLDEPTAGLDPKGRKEMM-EMF 188 (290)
T ss_pred cCCCHHHHHHHHHHHHHHCCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHH
Confidence 456778888863 21111 234556554 999999999 999999999999 9999999999 999
Q ss_pred HHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecc
Q 026589 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (236)
Q Consensus 124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vls 173 (236)
+++++ .|.+|+++. |.+.+...+++++++...+.+....+.-.+++
T Consensus 189 ~~l~~~~g~tviiit----Hd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 189 YKLHKEKGLTTVLVT----HSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHhcCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99976 488888775 88888888888887777777665544434443
No 61
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=9.7e-26 Score=200.31 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=126.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------------------CCCCC-CC-------cC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------------ENFDY-PV-------AM 51 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------------------~~~~~-~~-------~~ 51 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..
T Consensus 53 e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~ 132 (320)
T PRK13631 53 KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc
Confidence 5799999999999999999999999999999999865421 12233 22 12
Q ss_pred CHHHhhh----------------HHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-cc
Q 026589 52 DIRELIS----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IE 111 (236)
Q Consensus 52 ~i~~~i~----------------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD 111 (236)
++++++. +.++++.++++. ..... ...++++++ ++||++++. +|+++||||||+ ||
T Consensus 133 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGqkqRvaiAraL~~--~p~iLLLDEPtsgLD 208 (320)
T PRK13631 133 TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS--PFGLSGGQKRRVAIAGILAI--QPEILIFDEPTAGLD 208 (320)
T ss_pred hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCC
Confidence 5555542 456778888862 22111 234556554 999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecccccccc
Q 026589 112 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179 (236)
Q Consensus 112 ~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~ 179 (236)
+.++..++ +++++++++|.||+++. |.+.....+++.+++...+.+....++-.+++..+++.
T Consensus 209 ~~~~~~l~-~~L~~l~~~g~Tiiivt----Hd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~ 271 (320)
T PRK13631 209 PKGEHEMM-QLILDAKANNKTVFVIT----HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIIN 271 (320)
T ss_pred HHHHHHHH-HHHHHHHHCCCEEEEEe----cCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHH
Confidence 99999999 99999876788988775 88888888888888887777777666666665555443
No 62
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.93 E-value=1.4e-25 Score=187.53 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~--------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~ 107 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP 107 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999999999999876531 22333 11 235555542
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 108 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~ 182 (211)
T cd03225 108 EEEIEERVEEALELVGLEGLRDRS--PFTLSGGQKQRVAIAGVLAM--DPDILLLDEPTAGLDPAGRRELL-ELLKKLKA 182 (211)
T ss_pred HHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34577778886432221 234666654 999999999 999999999999 9999999999 88999876
Q ss_pred CCCcEEEEEecccccccchhhHhhhhH
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
+|.+++++. |...+...+++.++
T Consensus 183 ~~~tvi~~s----H~~~~~~~~~d~i~ 205 (211)
T cd03225 183 EGKTIIIVT----HDLDLLLELADRVI 205 (211)
T ss_pred cCCEEEEEe----CCHHHHHHhCCEEE
Confidence 688887774 87776766665443
No 63
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=9.9e-26 Score=192.13 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 108 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP 108 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC
Confidence 4789999999999999999999999999999999976531 22333 22345555432
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
++++++.+++.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 183 (239)
T cd03296 109 PEAEIRAKVHELLKLVQLDWLADRY--PAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRRLH 183 (239)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 34567777876432211 234666654 999999999 999999999999 9999999999 9999987
Q ss_pred hC-CCcEEEEEecccccccchhhHhhhh
Q 026589 128 SR-NFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++ |.+++++. |...+...+++.+
T Consensus 184 ~~~~~tvii~s----H~~~~~~~~~d~i 207 (239)
T cd03296 184 DELHVTTVFVT----HDQEEALEVADRV 207 (239)
T ss_pred HHcCCEEEEEe----CCHHHHHHhCCEE
Confidence 64 78887775 7776666666533
No 64
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.5e-26 Score=196.96 Aligned_cols=156 Identities=16% Similarity=0.165 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~--------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~ 111 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLD 111 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCC
Confidence 5799999999999999999999999999999999976532 22333 22 225555543
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
+.++++.+++.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 112 ~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 186 (274)
T PRK13647 112 KDEVERRVEEALKAVRMWDFRDKP--PYHLSYGQKKRVAIAGVLAM--DPDVIVLDEPMAYLDPRGQETLM-EILDRLHN 186 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHH
Confidence 45677788886532222 245666654 999999999 999999999999 9999999999 99999876
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
+|.+++++. |.+.....+++.+++...+.+....+
T Consensus 187 ~g~tili~t----H~~~~~~~~~d~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 187 QGKTVIVAT----HDVDLAAEWADQVIVLKEGRVLAEGD 221 (274)
T ss_pred CCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEECC
Confidence 788888775 88888888888777766666654444
No 65
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.3e-26 Score=202.96 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCC-------CCCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~-------~~~~~~i~~~i~------------ 58 (236)
.+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++ .+++.++++++.
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~ 112 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEE 112 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHH
Confidence 5789999999999999999999999999999999976532 2232 345667877764
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
++++++.+++.+..... ...++++++ ++|||+++. +|+++|||||++ ||+.++.++. +.++++.+ .|
T Consensus 113 ~~~~v~~~l~~~gl~~~~~r~--~~~LSgGq~QRVaLARaL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 187 (351)
T PRK11432 113 RKQRVKEALELVDLAGFEDRY--VDQISGGQQQRVALARALIL--KPKVLLFDEPLSNLDANLRRSMR-EKIRELQQQFN 187 (351)
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45677888887643222 235666654 999999999 999999999999 9999999999 88888876 48
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
.++++|+ |...+...+++.++++..+.+.
T Consensus 188 ~tii~vT----Hd~~e~~~laD~i~vm~~G~i~ 216 (351)
T PRK11432 188 ITSLYVT----HDQSEAFAVSDTVIVMNKGKIM 216 (351)
T ss_pred CEEEEEc----CCHHHHHHhCCEEEEEECCEEE
Confidence 8888774 8888888888766555555443
No 66
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=9.5e-26 Score=202.79 Aligned_cols=157 Identities=14% Similarity=0.162 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 29 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~ 108 (353)
T PRK10851 29 QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERP 108 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCC
Confidence 4789999999999999999999999999999999987532 22332 33455655543
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
+.++++.+++....... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. +.+++++
T Consensus 109 ~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGq~QRvalArAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~ 183 (353)
T PRK10851 109 NAAAIKAKVTQLLEMVQLAHLADRY--PAQLSGGQKQRVALARALAV--EPQILLLDEPFGALDAQVRKELR-RWLRQLH 183 (353)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHH
Confidence 44577888887543222 245666654 999999999 999999999999 9999999999 8899987
Q ss_pred hC-CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
++ |.++++++ |+..+...+++.++++..+.+....++
T Consensus 184 ~~~g~tii~vT----Hd~~ea~~~~Dri~vl~~G~i~~~g~~ 221 (353)
T PRK10851 184 EELKFTSVFVT----HDQEEAMEVADRVVVMSQGNIEQAGTP 221 (353)
T ss_pred HhcCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 64 88888775 888888888876666655555443333
No 67
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=1e-25 Score=203.96 Aligned_cols=157 Identities=11% Similarity=0.081 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----C-------CCCCCCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----E-------NFDYPVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~-------~~~~~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. . ...+++..++++++.
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~ 120 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE 120 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHH
Confidence 4789999999999999999999999999999999976531 2 223345667877764
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
++++++.+++.+..... ...++++++ ++|||+|+. +|+++|||||++ ||...+..+. +.++++.+ .|
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~--p~~LSgGq~QRVaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g 195 (375)
T PRK09452 121 ITPRVMEALRMVQLEEFAQRK--PHQLSGGQQQRVAIARAVVN--KPKVLLLDESLSALDYKLRKQMQ-NELKALQRKLG 195 (375)
T ss_pred HHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcC
Confidence 45677888887643332 245666654 999999999 999999999999 9999999998 88888876 48
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
.++|+|+ |...+...+++.++++..+.+....++
T Consensus 196 ~tiI~vT----Hd~~ea~~laDri~vl~~G~i~~~g~~ 229 (375)
T PRK09452 196 ITFVFVT----HDQEEALTMSDRIVVMRDGRIEQDGTP 229 (375)
T ss_pred CEEEEEe----CCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 8988885 888888888876666666655444333
No 68
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.93 E-value=1.9e-25 Score=188.91 Aligned_cols=145 Identities=16% Similarity=0.075 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCCCCcCCHHHhhh----------------HHHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS----------------LEDVME 64 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~~~~~~i~~~i~----------------~~~~l~ 64 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ....+.+..++++++. +.++++
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 128 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE 128 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999976532 2233444556666543 345666
Q ss_pred HhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEeccc
Q 026589 65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (236)
Q Consensus 65 ~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~ 141 (236)
.+++.+..... ...++++.+ ++||++++. +|+++|+|||++ ||+.++..+. ++++++++++.+++++.
T Consensus 129 ~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEP~~gLD~~~~~~~~-~~l~~~~~~~~tiii~s---- 199 (224)
T cd03220 129 FSELGDFIDLP--VKTYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQ-RRLRELLKQGKTVILVS---- 199 (224)
T ss_pred HcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEe----
Confidence 77776543222 245666654 899999999 999999999999 9999999999 88888876678887774
Q ss_pred ccccchhhHhhhhHH
Q 026589 142 QFITDVTKFISGCMA 156 (236)
Q Consensus 142 ~~~~d~~~~~~~~l~ 156 (236)
|...+...+++.++.
T Consensus 200 H~~~~~~~~~d~i~~ 214 (224)
T cd03220 200 HDPSSIKRLCDRALV 214 (224)
T ss_pred CCHHHHHHhCCEEEE
Confidence 777766666654433
No 69
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.93 E-value=1.6e-25 Score=187.45 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-C------CcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-P------VAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-~------~~~~i~~~i~------------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDE 106 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHH
Confidence 5789999999999999999999999999999999876532 12333 2 2346666543
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++++ .|
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 181 (213)
T cd03301 107 IDERVREVAELLQIEHLLDRK--PKQLSGGQRQRVALGRAIVR--EPKVFLMDEPLSNLDAKLRVQMR-AELKRLQQRLG 181 (213)
T ss_pred HHHHHHHHHHHcCCHHHHhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence 34567778876432211 234555544 899999999 999999999999 9999999999 99999876 48
Q ss_pred CcEEEEEecccccccchhhHhhhh
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
.+++++. |...+...+++.+
T Consensus 182 ~tvi~~s----H~~~~~~~~~d~i 201 (213)
T cd03301 182 TTTIYVT----HDQVEAMTMADRI 201 (213)
T ss_pred CEEEEEe----CCHHHHHHhcCeE
Confidence 8887774 7766666666533
No 70
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.7e-25 Score=187.08 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 104 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAE 104 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHH
Confidence 5789999999999999999999999999999999976531 12223 22345555542
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
+.++++.+++.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++++ .+
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~ia~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~ 179 (211)
T cd03298 105 DRQAIEVALARVGLAGLEKRL--PGELSGGERQRVALARVLVR--DKPVLLLDEPFAALDPALRAEML-DLVLDLHAETK 179 (211)
T ss_pred HHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45567778886432221 234555554 999999999 999999999999 9999999999 99999875 48
Q ss_pred CcEEEEEecccccccchhhHhhhhHH
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
.++++++ |...+...+++.++.
T Consensus 180 ~tii~~s----H~~~~~~~~~d~i~~ 201 (211)
T cd03298 180 MTVLMVT----HQPEDAKRLAQRVVF 201 (211)
T ss_pred CEEEEEe----cCHHHHHhhhCEEEE
Confidence 8888775 887777777764443
No 71
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.5e-26 Score=198.46 Aligned_cols=162 Identities=13% Similarity=0.172 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-CCc-------CCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PVA-------MDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~~~-------~~i~~~i~----- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +|+ .++.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~ 113 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKN 113 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHH
Confidence 4789999999999999999999999999999999977531 23444 332 25555543
Q ss_pred -----------HHHHHHHhCCC-CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 -----------~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
+.++++.+|+. +..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~laraL~~--~p~illlDEPt~~LD~~~~~~l~-~~l 188 (286)
T PRK13646 114 FKMNLDEVKNYAHRLLMDLGFSRDVMSQS--PFQMSGGQMRKIAIVSILAM--NPDIIVLDEPTAGLDPQSKRQVM-RLL 188 (286)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHH
Confidence 45677788885 322111 234566554 999999999 999999999999 9999999999 999
Q ss_pred HHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecc
Q 026589 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (236)
Q Consensus 124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vls 173 (236)
+++++ .|.||+++. |.+.+...+++.+++...+.+....+.-.+++
T Consensus 189 ~~l~~~~g~tvl~vt----H~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 189 KSLQTDENKTIILVS----HDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHhCCCEEEEEe----cCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99875 588998775 88888888888777776666655544434443
No 72
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.93 E-value=8.8e-26 Score=189.10 Aligned_cols=145 Identities=18% Similarity=0.338 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--CCCCCC-CC--------cCCHHHhhh-------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-PV--------AMDIRELIS------------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~-~~--------~~~i~~~i~------------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++. ...++| ++ ..++++++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRL 105 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCC
Confidence 578999999999999999999999999999999987542 112222 11 134544432
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 106 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 180 (213)
T cd03235 106 SKADKAKVDEALERVGLSELADRQ--IGELSGGQQQRVLLARALVQ--DPDLLLLDEPFAGVDPKTQEDIY-ELLRELRR 180 (213)
T ss_pred CHHHHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh
Confidence 44567777776432111 234666654 999999999 999999999999 9999999999 89999876
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHH
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+|.+++++. |.......+++.++.
T Consensus 181 ~~~tvi~~s----H~~~~~~~~~d~i~~ 204 (213)
T cd03235 181 EGMTILVVT----HDLGLVLEYFDRVLL 204 (213)
T ss_pred cCCEEEEEe----CCHHHHHHhcCEEEE
Confidence 788887774 877777677665444
No 73
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.93 E-value=1.8e-25 Score=188.16 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CC------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~--------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 106 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA 106 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCch
Confidence 5789999999999999999999999999999999976531 22444 22 346666553
Q ss_pred -----HHHHHHHh-CCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026589 59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (236)
Q Consensus 59 -----~~~~l~~~-~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (236)
+.++++.+ ++...... ....++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++++.
T Consensus 107 ~~~~~~~~~l~~~~~l~~~~~~--~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~ 181 (222)
T cd03224 107 KRKARLERVYELFPRLKERRKQ--LAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIRELRDE 181 (222)
T ss_pred hHHHHHHHHHHHHHhhhhhhhC--chhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHC
Confidence 23345555 34332111 1234555544 999999999 999999999999 9999999999 999998767
Q ss_pred CCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
|.+++++. |...+...+++.++....+
T Consensus 182 ~~tiii~s----H~~~~~~~~~d~i~~l~~G 208 (222)
T cd03224 182 GVTILLVE----QNARFALEIADRAYVLERG 208 (222)
T ss_pred CCEEEEEe----CCHHHHHHhccEEEEeeCC
Confidence 88887774 7777777777644444333
No 74
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.8e-26 Score=198.05 Aligned_cols=159 Identities=13% Similarity=0.117 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-CC-------cCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~~-------~~~i~~~i~----- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 113 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN 113 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHH
Confidence 4789999999999999999999999999999999986521 12333 22 135555543
Q ss_pred -----------HHHHHHHhCCC-CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 -----------~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
+.++++.+|+. ...... ...++++++ ++||++++. +|++|||||||+ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrl~laral~~--~p~lLlLDEPt~gLD~~~~~~l~-~~l 188 (287)
T PRK13641 114 FGFSEDEAKEKALKWLKKVGLSEDLISKS--PFELSGGQMRRVAIAGVMAY--EPEILCLDEPAAGLDPEGRKEMM-QLF 188 (287)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHH
Confidence 45667788886 322221 234666654 999999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeee
Q 026589 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (236)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~ 170 (236)
++++++|.+++++. |.+.+...+|+.+++...+.+....+.-.
T Consensus 189 ~~l~~~g~tvlivs----H~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 189 KDYQKAGHTVILVT----HNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHhCCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99976788887774 88888888888777776666654444433
No 75
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=1.4e-25 Score=191.14 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-C------CcCCHHHhhh--------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P------VAMDIRELIS-------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~------~~~~i~~~i~-------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+.| + +..++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 107 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRG 107 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcC
Confidence 4789999999999999999999999999999999976531 12333 2 2345555442
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+|+.+..... ...++++.+ +.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 108 ~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 182 (240)
T PRK09493 108 ASKEEAEKQARELLAKVGLAERAHHY--PSELSGGQQQRVAIARALAV--KPKLMLFDEPTSALDPELRHEVL-KVMQDL 182 (240)
T ss_pred CCHHHHHHHHHHHHHHcCChHHHhcC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 34677788886532221 234555554 999999999 999999999999 9999999999 899998
Q ss_pred HhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
+++|.+++++. |...+...+++.++..
T Consensus 183 ~~~~~tiii~s----H~~~~~~~~~d~i~~l 209 (240)
T PRK09493 183 AEEGMTMVIVT----HEIGFAEKVASRLIFI 209 (240)
T ss_pred HHcCCEEEEEe----CCHHHHHHhCCEEEEE
Confidence 76788887774 8877777777644443
No 76
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.93 E-value=2e-25 Score=187.75 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 108 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS 108 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999976531 12233 22446666543
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
+.++++.+++.+.... ....++++.+ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++ +
T Consensus 109 ~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~ 182 (220)
T cd03263 109 EIKEEVELLLRVLGLTDKANK--RARTLSGGMKRKLSLAIALIG--GPSVLLLDEPTSGLDPASRRAIW-DLILEVRK-G 182 (220)
T ss_pred HHHHHHHHHHHHcCCHHHHhC--hhhhCCHHHHHHHHHHHHHhc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHhc-C
Confidence 3456777888643222 1244655544 999999999 999999999999 9999999999 99999865 5
Q ss_pred CcEEEEEecccccccchhhHhhhhHHH
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
.+++++ +|.......+++.++..
T Consensus 183 ~tii~~----sH~~~~~~~~~d~i~~l 205 (220)
T cd03263 183 RSIILT----THSMDEAEALCDRIAIM 205 (220)
T ss_pred CEEEEE----cCCHHHHHHhcCEEEEE
Confidence 777666 48877776777644443
No 77
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.92 E-value=1.9e-25 Score=190.55 Aligned_cols=144 Identities=17% Similarity=0.243 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-C------CcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK 108 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc
Confidence 5789999999999999999999999999999999876421 12333 2 2345555442
Q ss_pred -----------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 59 -----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
+.++++.+++....... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 184 (243)
T TIGR02315 109 PTWRSLLGRFSEEDKERALSALERVGLADKAYQR--ADQLSGGQQQRVAIARALAQ--QPDLILADEPIASLDPKTSKQV 184 (243)
T ss_pred cchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 34567777776432211 234666654 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhhH
Q 026589 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
. ++++++++ .|.++++++ |.......+++.++
T Consensus 185 ~-~~l~~~~~~~~~tiii~t----H~~~~~~~~~d~v~ 217 (243)
T TIGR02315 185 M-DYLKRINKEDGITVIINL----HQVDLAKKYADRIV 217 (243)
T ss_pred H-HHHHHHHHHcCCEEEEEe----CCHHHHHHhcCeEE
Confidence 9 99999865 478887774 87776667765333
No 78
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.3e-25 Score=189.66 Aligned_cols=143 Identities=16% Similarity=0.194 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-C------CcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 107 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR 107 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc
Confidence 5789999999999999999999999999999999976531 12333 2 2345655542
Q ss_pred -----------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 59 -----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 183 (241)
T cd03256 108 STWRSLFGLFPKEEKQRALAALERVGLLDKAYQR--ADQLSGGQQQRVAIARALMQ--QPKLILADEPVASLDPASSRQV 183 (241)
T ss_pred hhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHH
Confidence 33456777776432221 234556554 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhh
Q 026589 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
+ ++++++++ .|.+++++. |...+...+++.+
T Consensus 184 ~-~~l~~~~~~~~~tii~~t----H~~~~~~~~~d~v 215 (241)
T cd03256 184 M-DLLKRINREEGITVIVSL----HQVDLAREYADRI 215 (241)
T ss_pred H-HHHHHHHHhcCCEEEEEe----CCHHHHHHhCCEE
Confidence 9 99999875 488887774 8877777676533
No 79
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2e-25 Score=189.54 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-C------CcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P------VAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~------~~~~i~~~i~------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 115 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG 115 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999976531 22334 2 2346666642
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 116 ~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 190 (233)
T PRK11629 116 KKKPAEINSRALEMLAAVGLEHRANHR--PSELSGGERQRVAIARALVN--NPRLVLADEPTGNLDARNADSIF-QLLGE 190 (233)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 45677888886542222 245666654 999999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCcEEEEEecccccccchhh
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTK 149 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~ 149 (236)
+++ .|.++++++ |.......
T Consensus 191 ~~~~~g~tvii~s----H~~~~~~~ 211 (233)
T PRK11629 191 LNRLQGTAFLVVT----HDLQLAKR 211 (233)
T ss_pred HHHhCCCEEEEEe----CCHHHHHh
Confidence 875 588888774 76654433
No 80
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.8e-25 Score=193.77 Aligned_cols=156 Identities=12% Similarity=0.113 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~--------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~ 113 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIP 113 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCC
Confidence 4789999999999999999999999999999999987632 12333 22 235666553
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~ 188 (279)
T PRK13650 114 HEEMKERVNEALELVGMQDFKERE--PARLSGGQKQRVAIAGAVAM--RPKIIILDEATSMLDPEGRLELI-KTIKGIRD 188 (279)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHH
Confidence 46678888887532222 134555543 999999999 999999999999 9999999999 99999876
Q ss_pred C-CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 129 ~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
+ |.+++++. |.+... .+++++++...+.+....+.
T Consensus 189 ~~g~tilivt----H~~~~~-~~~dri~~l~~G~i~~~g~~ 224 (279)
T PRK13650 189 DYQMTVISIT----HDLDEV-ALSDRVLVMKNGQVESTSTP 224 (279)
T ss_pred hcCCEEEEEe----cCHHHH-HhCCEEEEEECCEEEEECCH
Confidence 4 88998775 777655 46776666666655544443
No 81
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.92 E-value=7.1e-25 Score=180.63 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-CC-------cCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~-------~~~i~~~i~------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~ 98 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG 98 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcC
Confidence 5799999999999999999999999999999999876521 12333 22 125555542
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+++.+..... ...++++.+ +.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 99 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~ 173 (190)
T TIGR01166 99 LSEAEVERRVREALTAVGASGLRERP--THCLSGGEKKRVAIAGAVAM--RPDVLLLDEPTAGLDPAGREQML-AILRRL 173 (190)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 34567778886532222 234666544 999999999 999999999999 9999999999 999998
Q ss_pred HhCCCcEEEEE
Q 026589 127 KSRNFNVCAVY 137 (236)
Q Consensus 127 ~~~~~~ii~v~ 137 (236)
+++|.++++++
T Consensus 174 ~~~~~tili~s 184 (190)
T TIGR01166 174 RAEGMTVVIST 184 (190)
T ss_pred HHcCCEEEEEe
Confidence 77788887774
No 82
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.4e-26 Score=189.13 Aligned_cols=158 Identities=16% Similarity=0.231 Sum_probs=125.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CC------cCCHHHhhh--------
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS-------- 58 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~-------- 58 (236)
+-+++++||||+||||.+.++.|+.+|++|+|.+++.|+.. -.++| || .++++|++.
T Consensus 30 GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~ 109 (243)
T COG1137 30 GEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK 109 (243)
T ss_pred CcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc
Confidence 35899999999999999999999999999999999999753 45677 55 345666653
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+++++++|++....... ...++++-+ +.|||+|+. +|++++||||++ +||.+..++. ++++.
T Consensus 110 d~~~~~~~~~l~~LL~ef~i~hlr~~~--a~sLSGGERRR~EIARaLa~--~P~fiLLDEPFAGVDPiaV~dIq-~iI~~ 184 (243)
T COG1137 110 DLKKAERKEELDALLEEFHITHLRDSK--AYSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPIAVIDIQ-RIIKH 184 (243)
T ss_pred chhHHHHHHHHHHHHHHhchHHHhcCc--ccccccchHHHHHHHHHHhc--CCCEEEecCCccCCCchhHHHHH-HHHHH
Confidence 55788888887654332 123555543 999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
|+..|..|+++ -|...+...+|+++.+...|.+..+..+
T Consensus 185 L~~rgiGvLIT----DHNVREtL~i~dRaYIi~~G~vla~G~p 223 (243)
T COG1137 185 LKDRGIGVLIT----DHNVRETLDICDRAYIISDGKVLAEGSP 223 (243)
T ss_pred HHhCCceEEEc----cccHHHHHhhhheEEEEecCeEEecCCH
Confidence 99899998655 4999888888876666555555544444
No 83
>PRK10908 cell division protein FtsE; Provisional
Probab=99.92 E-value=3.3e-25 Score=186.85 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-C------CcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG 108 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC
Confidence 5789999999999999999999999999999999876531 12333 2 2345665543
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~ 183 (222)
T PRK10908 109 ASGDDIRRRVSAALDKVGLLDKAKNF--PIQLSGGEQQRVGIARAVVN--KPAVLLADEPTGNLDDALSEGIL-RLFEEF 183 (222)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence 34577788886532211 234656554 999999999 999999999999 9999999999 899998
Q ss_pred HhCCCcEEEEEecccccccchhhHhhhhH
Q 026589 127 KSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
++++.+++++. |...+...+++.++
T Consensus 184 ~~~~~tiii~s----H~~~~~~~~~d~i~ 208 (222)
T PRK10908 184 NRVGVTVLMAT----HDIGLISRRSYRML 208 (222)
T ss_pred HHCCCEEEEEe----CCHHHHHHhCCEEE
Confidence 76778887774 77776666665433
No 84
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.5e-26 Score=198.63 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=120.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-CC-------cCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~-------~~~i~~~i~------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| ++ ..++++++.
T Consensus 33 e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~ 112 (283)
T PRK13636 33 EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK 112 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC
Confidence 5789999999999999999999999999999999987521 12333 22 235555542
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
++++++.+|+.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++
T Consensus 113 ~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrl~laraL~~--~p~lLilDEPt~gLD~~~~~~l~-~~l~~l 187 (283)
T PRK13636 113 LPEDEVRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVM--EPKVLVLDEPTAGLDPMGVSEIM-KLLVEM 187 (283)
T ss_pred CCHHHHHHHHHHHHHHCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHH
Confidence 45667888886533222 344666654 999999999 999999999999 9999999999 999998
Q ss_pred HhC-CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeee
Q 026589 127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (236)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~ 170 (236)
+++ |.+|+++. |.+.+...+|+.+++...+.+....+.-.
T Consensus 188 ~~~~g~tillvs----H~~~~~~~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 188 QKELGLTIIIAT----HDIDIVPLYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHhCCCEEEEEe----cCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 764 88888775 88888888888777766666554444433
No 85
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.92 E-value=2.5e-25 Score=192.02 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--CCCCCC-------CCcCCHHHhhh----------HHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-------PVAMDIRELIS----------LEDVM 63 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~-------~~~~~i~~~i~----------~~~~l 63 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| .+..++++++. +.+++
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l 118 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQAL 118 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHH
Confidence 478999999999999999999999999999999876532 122222 23356776653 45678
Q ss_pred HHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEec
Q 026589 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLL 139 (236)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~ 139 (236)
+.+++.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .+.+++++.
T Consensus 119 ~~~gl~~~~~~~--~~~LSgGqkqrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tviivs-- 191 (257)
T PRK11247 119 AAVGLADRANEW--PAALSGGQKQRVALARALIH--RPGLLLLDEPLGALDALTRIEMQ-DLIESLWQQHGFTVLLVT-- 191 (257)
T ss_pred HHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEe--
Confidence 888887532221 245666654 999999999 999999999999 9999999999 88888854 578887774
Q ss_pred ccccccchhhHhhhhHHHHHHHHh
Q 026589 140 DSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 140 d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
|.......+++.++....+.+.
T Consensus 192 --Hd~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 192 --HDVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred --CCHHHHHHhCCEEEEEECCEEE
Confidence 8877777777766555544443
No 86
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.3e-25 Score=189.26 Aligned_cols=144 Identities=21% Similarity=0.259 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C------CcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~------~~~~i~~~i~---------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK 107 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCH
Confidence 5789999999999999999999999999999999976532 12333 2 2346666542
Q ss_pred ------HHHHHHHhCCCC--CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 59 ------LEDVMEELGLGP--NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 ------~~~~l~~~~l~~--~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
+.++++.+++.+ .... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 108 ~~~~~~~~~~l~~l~l~~~~~~~~--~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~~ 182 (242)
T cd03295 108 EKIRERADELLALVGLDPAEFADR--YPHELSGGQQQRVGVARALAA--DPPLLLMDEPFGALDPITRDQLQ-EEFKRLQ 182 (242)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHhc--ChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHH
Confidence 456778888875 2111 1245666654 999999999 999999999999 9999999999 9999987
Q ss_pred hC-CCcEEEEEecccccccchhhHhhhhH
Q 026589 128 SR-NFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
++ |.+++++. |...+...+++.++
T Consensus 183 ~~~g~tvii~s----H~~~~~~~~~d~i~ 207 (242)
T cd03295 183 QELGKTIVFVT----HDIDEAFRLADRIA 207 (242)
T ss_pred HHcCCEEEEEe----cCHHHHHHhCCEEE
Confidence 64 88887774 77776666665333
No 87
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.6e-25 Score=185.98 Aligned_cols=143 Identities=20% Similarity=0.295 Sum_probs=107.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh------------
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~------------ 58 (236)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE 106 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence 689999999999999999999999999999999976532 12233 22346666543
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (236)
+.++++.+++.+.... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++ +.
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~ 180 (211)
T cd03264 107 VKARVDEVLELVNLGDRAKK--KIGSLSGGMRRRVGIAQALVG--DPSILIVDEPTAGLDPEERIRFR-NLLSELGE-DR 180 (211)
T ss_pred HHHHHHHHHHHCCCHHHHhC--chhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHhC-CC
Confidence 3456777787643211 1245666654 999999999 999999999999 9999999999 99999875 57
Q ss_pred cEEEEEecccccccchhhHhhhhHH
Q 026589 132 NVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 132 ~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++++. |.......+++.++.
T Consensus 181 tii~vs----H~~~~~~~~~d~i~~ 201 (211)
T cd03264 181 IVILST----HIVEDVESLCNQVAV 201 (211)
T ss_pred EEEEEc----CCHHHHHHhCCEEEE
Confidence 776664 777666666654433
No 88
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.2e-25 Score=191.59 Aligned_cols=143 Identities=16% Similarity=0.140 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-C------CcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++++++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 111 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT 111 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccc
Confidence 5789999999999999999999999999999999976531 12332 2 2345655432
Q ss_pred ----------------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHH
Q 026589 59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (236)
Q Consensus 59 ----------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~ 113 (236)
+.++++.+|+.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~ 187 (255)
T PRK11300 112 GLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ--AGNLAYGQQRRLEIARCMVT--QPEILMLDEPAAGLNPK 187 (255)
T ss_pred hhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHH
Confidence 23445667775432111 234555554 999999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhC-CCcEEEEEecccccccchhhHhhhh
Q 026589 114 THVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 114 ~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++..+. +++++++++ |.++++++ |...+...+|+.+
T Consensus 188 ~~~~l~-~~L~~~~~~~~~tii~~s----H~~~~~~~~~d~i 224 (255)
T PRK11300 188 ETKELD-ELIAELRNEHNVTVLLIE----HDMKLVMGISDRI 224 (255)
T ss_pred HHHHHH-HHHHHHHhhcCCEEEEEe----CCHHHHHHhCCEE
Confidence 999999 999998764 88887775 8877777777533
No 89
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.8e-25 Score=194.00 Aligned_cols=145 Identities=18% Similarity=0.173 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 130 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 130 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999876421 12333 22346666553
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++++
T Consensus 131 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~lAral~~--~p~illLDEPt~~LD~~~~~~l~-~~l~~ 205 (269)
T cd03294 131 GVPRAEREERAAEALELVGLEGWEHKY--PDELSGGMQQRVGLARALAV--DPDILLMDEAFSALDPLIRREMQ-DELLR 205 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHH
Confidence 34567788886532221 234556554 999999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhhhhHH
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+.+ .|.+++++. |...+...+++.++.
T Consensus 206 ~~~~~g~tiii~t----H~~~~~~~~~d~v~~ 233 (269)
T cd03294 206 LQAELQKTIVFIT----HDLDEALRLGDRIAI 233 (269)
T ss_pred HHHhcCCEEEEEe----CCHHHHHHhcCEEEE
Confidence 865 478887774 877766677654433
No 90
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3e-25 Score=186.12 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999999999999999876421 12333 22345665543
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
+.++++.+++...... ....++++++ +.||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 178 (214)
T cd03297 104 RNREDRISVDELLDLLGLDHLLNR--YPAQLSGGEKQRVALARALAA--QPELLLLDEPFSALDRALRLQLL-PELKQIK 178 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhc--CcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 4457778888643211 1234666554 999999999 999999999999 9999999999 9999987
Q ss_pred hC-CCcEEEEEecccccccchhhHhhhhHH
Q 026589 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++ |.+++++. |.......+++.++.
T Consensus 179 ~~~~~tiii~s----H~~~~~~~~~d~i~~ 204 (214)
T cd03297 179 KNLNIPVIFVT----HDLSEAEYLADRIVV 204 (214)
T ss_pred HHcCcEEEEEe----cCHHHHHHhcCEEEE
Confidence 64 78887774 777766666654433
No 91
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.92 E-value=4.3e-25 Score=186.24 Aligned_cols=149 Identities=13% Similarity=0.166 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---CCCCC-------CCcCCHHHhhh------------HH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---~~~~~-------~~~~~i~~~i~------------~~ 60 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++. +.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 106 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRID 106 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHH
Confidence 5789999999999999999999999999999999876431 12222 22356766653 45
Q ss_pred HHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 61 DVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 61 ~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
++++.+++.+..... ...++++.+ ++||++++. +|+++++||||+ ||+.++..++ +++++++++|.+++++.
T Consensus 107 ~~l~~~~l~~~~~~~--~~~LS~G~~~rv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~~~~tiii~s 181 (223)
T TIGR03740 107 EVLNIVDLTNTGKKK--AKQFSLGMKQRLGIAIALLN--HPKLLILDEPTNGLDPIGIQELR-ELIRSFPEQGITVILSS 181 (223)
T ss_pred HHHHHcCCcHHHhhh--HhhCCHHHHHHHHHHHHHhc--CCCEEEECCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEc
Confidence 677888887542221 234666554 899999999 999999999999 9999999999 99999876788887774
Q ss_pred ecccccccchhhHhhhhHHHHHH
Q 026589 138 LLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 138 l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
|...+...+++.++....+
T Consensus 182 ----H~~~~~~~~~d~i~~l~~g 200 (223)
T TIGR03740 182 ----HILSEVQQLADHIGIISEG 200 (223)
T ss_pred ----CCHHHHHHhcCEEEEEeCC
Confidence 8877777777644443333
No 92
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-25 Score=195.28 Aligned_cols=157 Identities=12% Similarity=0.084 Sum_probs=116.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-CCc-------CCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PVA-------MDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~~-------~~i~~~i~------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~ 107 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG 107 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999977521 12344 221 13444332
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++++++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 182 (271)
T PRK13638 108 VPEAEITRRVDEALTLVDAQHFRHQP--IQCLSHGQKKRVAIAGALVL--QARYLLLDEPTAGLDPAGRTQMI-AIIRRI 182 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhcCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 34567777876432221 235666654 999999999 999999999999 9999999999 999998
Q ss_pred HhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
+++|.+++++. |.......+++.++....+.+....+.
T Consensus 183 ~~~g~tii~vt----H~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (271)
T PRK13638 183 VAQGNHVIISS----HDIDLIYEISDAVYVLRQGQILTHGAP 220 (271)
T ss_pred HHCCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 76688887774 888777788876666655555444333
No 93
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.4e-25 Score=188.49 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCC-------CCcCCHHHhhh---------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS--------------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~-------~~~~~i~~~i~--------------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 107 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE 107 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHH
Confidence 5799999999999999999999999999999999876532 11222 22345655542
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcE
Q 026589 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (236)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i 133 (236)
+.++++.+++.+.... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .|.++
T Consensus 108 ~~~~~l~~~gl~~~~~~--~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tv 182 (255)
T PRK11248 108 IAHQMLKKVGLEGAEKR--YIWQLSGGQRQRVGIARALAA--NPQLLLLDEPFGALDAFTREQMQ-TLLLKLWQETGKQV 182 (255)
T ss_pred HHHHHHHHcCChhHhhC--ChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 4567788888653221 1245666654 999999999 999999999999 9999999999 99999854 58888
Q ss_pred EEEEecccccccchhhHhhhhHHH
Q 026589 134 CAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
++++ |.......+++.++..
T Consensus 183 iivs----H~~~~~~~~~d~i~~l 202 (255)
T PRK11248 183 LLIT----HDIEEAVFMATELVLL 202 (255)
T ss_pred EEEe----CCHHHHHHhCCEEEEE
Confidence 7775 8877777777655444
No 94
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.92 E-value=1.3e-24 Score=180.92 Aligned_cols=144 Identities=16% Similarity=0.109 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------~ 59 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++. +
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 106 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQV 106 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHH
Confidence 5799999999999999999999999999999999877532 12333 22356776653 5
Q ss_pred HHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026589 60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 60 ~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
+++++.+++.+..... ...++++++ +++|++++. +|+++|+||||+ ||+.++..+. +++++++++|.+++++
T Consensus 107 ~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~ 181 (201)
T cd03231 107 EEALARVGLNGFEDRP--VAQLSAGQQRRVALARLLLS--GRPLWILDEPTTALDKAGVARFA-EAMAGHCARGGMVVLT 181 (201)
T ss_pred HHHHHHcCChhhhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 6678888887532221 245666554 999999999 999999999999 9999999999 8898887678888777
Q ss_pred EecccccccchhhHhhhhH
Q 026589 137 YLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 137 ~l~d~~~~~d~~~~~~~~l 155 (236)
. |...+...+++.++
T Consensus 182 s----H~~~~~~~~~~~~~ 196 (201)
T cd03231 182 T----HQDLGLSEAGAREL 196 (201)
T ss_pred e----cCchhhhhccceeE
Confidence 4 76655555665443
No 95
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-25 Score=200.20 Aligned_cols=157 Identities=13% Similarity=0.187 Sum_probs=120.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-----------CCCCCC-------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~-----------~~~~~~-------~~~~~i~~~i~------ 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...++| .+..++++++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 104 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKS 104 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhh
Confidence 478999999999999999999999999999999987642 122333 23457777764
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (236)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ ++++++.++ |
T Consensus 105 ~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qRvalaraL~~--~p~llLLDEPts~LD~~~~~~l~-~~L~~l~~~~g 179 (352)
T PRK11144 105 MVAQFDKIVALLGIEPLLDRY--PGSLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKRELL-PYLERLAREIN 179 (352)
T ss_pred hHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 56788889987543222 235666654 999999999 999999999999 9999999999 889988764 7
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
.+++++. |...+...+++.++....+.+....++
T Consensus 180 ~tii~vT----Hd~~~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 180 IPILYVS----HSLDEILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred CeEEEEe----cCHHHHHHhCCEEEEEeCCEEEEecCH
Confidence 8888775 888877888876666655555443333
No 96
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.5e-25 Score=188.19 Aligned_cols=149 Identities=14% Similarity=0.217 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CC------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~--------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++.+++.
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 109 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDL 109 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccccc
Confidence 5789999999999999999999999999999999976531 22333 22 235555432
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
+.++++.+++...... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 184 (241)
T PRK10895 110 SAEQREDRANELMEEFHIEHLRDS--MGQSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPISVIDIK-RIIEHLR 184 (241)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhhc--chhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 4556777777643211 1245666654 899999999 999999999999 9999999999 8899987
Q ss_pred hCCCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
++|.+++++. |...+...+++.++....+
T Consensus 185 ~~g~tiii~s----H~~~~~~~~~d~v~~l~~G 213 (241)
T PRK10895 185 DSGLGVLITD----HNVRETLAVCERAYIVSQG 213 (241)
T ss_pred hcCCEEEEEE----cCHHHHHHhcCEEEEEeCC
Confidence 7788887774 7777677777644443333
No 97
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.9e-25 Score=202.26 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++| ++..++++++.
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~ 134 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999977531 23444 23457777654
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+|+.+..... ...++++++ +.||++++. +|+++||||||+ ||+.++..+. +++++
T Consensus 135 ~~~~~~~~~~~~e~L~~~gL~~~~~~~--~~~LSgGq~QRv~LArAL~~--~P~iLLLDEPts~LD~~~r~~l~-~~L~~ 209 (400)
T PRK10070 135 GINAEERREKALDALRQVGLENYAHSY--PDELSGGMRQRVGLARALAI--NPDILLMDEAFSALDPLIRTEMQ-DELVK 209 (400)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhhcC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHH
Confidence 34577888887543222 235666654 999999999 999999999999 9999999999 88888
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhC
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
+++ .|++++++. |.+.+..++++.+++...+.+...
T Consensus 210 l~~~~g~TIIivT----Hd~~~~~~~~Dri~vL~~G~i~~~ 246 (400)
T PRK10070 210 LQAKHQRTIVFIS----HDLDEAMRIGDRIAIMQNGEVVQV 246 (400)
T ss_pred HHHHCCCeEEEEE----CCHHHHHHhCCEEEEEECCEEEec
Confidence 865 588888775 888888888877766666555433
No 98
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.92 E-value=3.2e-25 Score=186.61 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 111 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG 111 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999876521 22333 22346666542
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+|+.+..... ...++++++ +.||++++. +|+++||||||+ ||+.++..+. +++++
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~ 186 (221)
T TIGR02211 112 KKSVKEAKERAYEMLEKVGLEHRINHR--PSELSGGERQRVAIARALVN--QPSLVLADEPTGNLDNNNAKIIF-DLMLE 186 (221)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCcCCHHHHHHHH-HHHHH
Confidence 34677788886542222 245666654 999999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCcEEEEEecccccccch
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~ 147 (236)
+++ .+.++++++ |.....
T Consensus 187 ~~~~~~~tii~~t----H~~~~~ 205 (221)
T TIGR02211 187 LNRELNTSFLVVT----HDLELA 205 (221)
T ss_pred HHHhcCCEEEEEe----CCHHHH
Confidence 875 478887774 665543
No 99
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.92 E-value=4.5e-25 Score=189.10 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCC-------CCcCCHHHhhh--
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDY-------PVAMDIRELIS-- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~~-------~~~~~i~~~i~-- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHH
Confidence 5789999999999999999999999999999999865421 12333 22345665542
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 ---------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+|+.+.... ....++++++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~LS~Gq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~- 184 (250)
T PRK11264 110 PVIVKGEPKEEATARARELLAKVGLAGKETS--YPRRLSGGQQQRVAIARALAM--RPEVILFDEPTSALDPELVGEVL- 184 (250)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCcchhhC--ChhhCChHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 3456777788643211 1244666654 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++++++++|.+++++. |...+...+++.++.
T Consensus 185 ~~l~~~~~~~~tvi~~t----H~~~~~~~~~d~i~~ 216 (250)
T PRK11264 185 NTIRQLAQEKRTMVIVT----HEMSFARDVADRAIF 216 (250)
T ss_pred HHHHHHHhcCCEEEEEe----CCHHHHHHhcCEEEE
Confidence 89999877788887774 777766666653333
No 100
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.92 E-value=3.7e-25 Score=191.99 Aligned_cols=150 Identities=16% Similarity=0.213 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-C------CcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 113 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT 113 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc
Confidence 4789999999999999999999999999999999876421 12333 2 2346666543
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++....... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 188 (269)
T PRK11831 114 QLPAPLLHSTVMMKLEAVGLRGAAKLM--PSELSGGMARRAALARAIAL--EPDLIMFDEPFVGQDPITMGVLV-KLISE 188 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHH
Confidence 23456777886532222 245666654 999999999 999999999999 9999999999 99999
Q ss_pred HHhC-CCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 126 l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
++++ |.+++++. |...+...+++.++....+.
T Consensus 189 ~~~~~g~tiiivs----H~~~~~~~~~d~v~~l~~G~ 221 (269)
T PRK11831 189 LNSALGVTCVVVS----HDVPEVLSIADHAYIVADKK 221 (269)
T ss_pred HHHhcCcEEEEEe----cCHHHHHHhhCEEEEEECCE
Confidence 8764 78887775 87777777776554443333
No 101
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.7e-25 Score=195.01 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=113.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-CC-------cCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~~-------~~~i~~~i~----- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~ 113 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQN 113 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence 4789999999999999999999999999999999876421 22344 22 125655543
Q ss_pred -----------HHHHHHHhCCCCC-CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 -----------LEDVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 -----------~~~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
++++++.+++.+. ... ....++++++ +.||++++. +|+++||||||+ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 188 (280)
T PRK13649 114 FGVSQEEAEALAREKLALVGISESLFEK--NPFELSGGQMRRVAIAGILAM--EPKILVLDEPTAGLDPKGRKELM-TLF 188 (280)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhhhC--CcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 3456677788632 111 1234666654 999999999 999999999999 9999999999 889
Q ss_pred HHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026589 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
++++++|.+|+++. |...+...+++.+++...+.+.
T Consensus 189 ~~~~~~~~tiiivs----H~~~~~~~~~d~i~~l~~G~i~ 224 (280)
T PRK13649 189 KKLHQSGMTIVLVT----HLMDDVANYADFVYVLEKGKLV 224 (280)
T ss_pred HHHHHCCCEEEEEe----ccHHHHHHhCCEEEEEECCEEE
Confidence 99876688887774 8877777777766665555543
No 102
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.92 E-value=3.3e-25 Score=199.46 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 103 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA 103 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence 5789999999999999999999999999999999876421 12333 23456777653
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
++++++.+++.+..... ...++++++ ++||++++. +|+++||||||+ ||+.++..++ +++++++
T Consensus 104 ~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGqkqRvalAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~l~ 178 (354)
T TIGR02142 104 RPSERRISFERVIELLGIGHLLGRL--PGRLSGGEKQRVAIGRALLS--SPRLLLMDEPLAALDDPRKYEIL-PYLERLH 178 (354)
T ss_pred ChhHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHH
Confidence 45678888887543222 245666654 999999999 999999999999 9999999999 9999987
Q ss_pred hC-CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhC
Q 026589 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
++ |.+++++. |...+...+++.++....+.+...
T Consensus 179 ~~~g~tiiivt----H~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 179 AEFGIPILYVS----HSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred HhcCCEEEEEe----cCHHHHHHhCCEEEEEeCCEEEEE
Confidence 64 78887774 888877788877766666555433
No 103
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.92 E-value=4e-25 Score=179.19 Aligned_cols=130 Identities=16% Similarity=0.228 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---CCCCC--------C------CcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY--------P------VAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---~~~~~--------~------~~~~i~~~i~------- 58 (236)
.++.++||+|||||||+|.|++..+|++|+|+++|.|+.+ ..++| + ++.++.|++.
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G 108 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG 108 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC
Confidence 4678999999999999999999999999999999998753 22322 2 3557888876
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+||...... .+ ..++++ ++++||||++. +|++||.||||. |||....+++ +++.++
T Consensus 109 ~~~~~i~~rV~~~L~~VgL~~k~~~-lP-~~LSGGEQQRvaIARAiV~--~P~vLlADEPTGNLDp~~s~~im-~lfeei 183 (223)
T COG2884 109 KPPREIRRRVSEVLDLVGLKHKARA-LP-SQLSGGEQQRVAIARAIVN--QPAVLLADEPTGNLDPDLSWEIM-RLFEEI 183 (223)
T ss_pred CCHHHHHHHHHHHHHHhccchhhhc-Cc-cccCchHHHHHHHHHHHcc--CCCeEeecCCCCCCChHHHHHHH-HHHHHH
Confidence 7889999999875322 22 134333 33999999999 999999999997 9999999999 999999
Q ss_pred HhCCCcEEEEE
Q 026589 127 KSRNFNVCAVY 137 (236)
Q Consensus 127 ~~~~~~ii~v~ 137 (236)
.+.|.||++.+
T Consensus 184 nr~GtTVl~AT 194 (223)
T COG2884 184 NRLGTTVLMAT 194 (223)
T ss_pred hhcCcEEEEEe
Confidence 99999998775
No 104
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.3e-25 Score=193.94 Aligned_cols=156 Identities=13% Similarity=0.142 Sum_probs=118.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-CCc-------CCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PVA-------MDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~~-------~~i~~~i~------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~ 108 (275)
T PRK13639 29 EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG 108 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC
Confidence 5799999999999999999999999999999999976521 12333 221 25555542
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++.+++.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l 183 (275)
T PRK13639 109 LSKEEVEKRVKEALKAVGMEGFENKP--PHHLSGGQKKRVAIAGILAM--KPEIIVLDEPTSGLDPMGASQIM-KLLYDL 183 (275)
T ss_pred CCHHHHHHHHHHHHHHCCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHH
Confidence 44677888886543222 234666554 999999999 999999999999 9999999999 999998
Q ss_pred HhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
+++|.+++++. |...+...+|+.+++...+.+....+
T Consensus 184 ~~~~~til~vt----H~~~~~~~~~d~i~~l~~G~i~~~g~ 220 (275)
T PRK13639 184 NKEGITIIIST----HDVDLVPVYADKVYVMSDGKIIKEGT 220 (275)
T ss_pred HHCCCEEEEEe----cCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 76788888775 88888888887666665555544433
No 105
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.92 E-value=8.2e-25 Score=186.14 Aligned_cols=137 Identities=18% Similarity=0.269 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-C------CcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-P------VAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-~------~~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~ 107 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA 107 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHH
Confidence 5789999999999999999999999999999999876531 12333 2 2345555542
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-C
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R 129 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~ 129 (236)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++ +
T Consensus 108 ~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~ 182 (236)
T TIGR03864 108 EARERIAALLARLGLAERADDK--VRELNGGHRRRVEIARALLH--RPALLLLDEPTVGLDPASRAAIV-AHVRALCRDQ 182 (236)
T ss_pred HHHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhC
Confidence 35567788886532222 234666554 899999999 999999999999 9999999999 88998874 5
Q ss_pred CCcEEEEEecccccccchh
Q 026589 130 NFNVCAVYLLDSQFITDVT 148 (236)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~ 148 (236)
|.+++++. |...+..
T Consensus 183 ~~tiii~s----H~~~~~~ 197 (236)
T TIGR03864 183 GLSVLWAT----HLVDEIE 197 (236)
T ss_pred CCEEEEEe----cChhhHh
Confidence 78887774 7665543
No 106
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.1e-25 Score=200.16 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCC-------CCCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~-------~~~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++ +++..++.+++.
T Consensus 46 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~ 125 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE 125 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999976531 2232 345667887764
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
+.++++.+++.+..... ...++++++ ++|||+++. +|++||||||++ ||...+..+. +.++++.+ .|
T Consensus 126 ~~~~v~~~l~~l~L~~~~~~~--~~~LSgGq~QRVaLARAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 200 (377)
T PRK11607 126 IASRVNEMLGLVHMQEFAKRK--PHQLSGGQRQRVALARSLAK--RPKLLLLDEPMGALDKKLRDRMQ-LEVVDILERVG 200 (377)
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45678888887643322 235666654 999999999 999999999999 9999999998 77777755 58
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhC
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
.++++|+ |...+...+++.++++..+.+...
T Consensus 201 ~tii~vT----Hd~~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 201 VTCVMVT----HDQEEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred CEEEEEc----CCHHHHHHhCCEEEEEeCCEEEEE
Confidence 8887774 888888888876666655555433
No 107
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.92 E-value=3.6e-25 Score=197.49 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC---------CCcCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~---------~~~~~i~~~i~----- 58 (236)
-+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 48 e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~ 127 (331)
T PRK15079 48 ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 127 (331)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999987631 12333 22345655542
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+.++++.+++.+.....+. ..++++++ ++||++++. +|+++|+||||+ ||+.++.+++ ++
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~i~-~l 203 (331)
T PRK15079 128 YHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP-HEFSGGQCQRIGIARALIL--EPKLIICDEPVSALDVSIQAQVV-NL 203 (331)
T ss_pred hccCCCHHHHHHHHHHHHHHcCCChHHhcCCc-ccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 4567888888542222222 35666654 999999999 999999999999 9999999999 99
Q ss_pred HHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
++++++ .|.+++++. |++.....+++.++++..+.+....+
T Consensus 204 L~~l~~~~~~til~iT----Hdl~~~~~~~dri~vl~~G~ive~g~ 245 (331)
T PRK15079 204 LQQLQREMGLSLIFIA----HDLAVVKHISDRVLVMYLGHAVELGT 245 (331)
T ss_pred HHHHHHHcCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999976 488988875 88888888887666555555443333
No 108
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.92 E-value=5.5e-25 Score=199.24 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc----CCCC-----------CCCCC-------CCcCCHHHhhh--
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL----DPAA-----------ENFDY-------PVAMDIRELIS-- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~----d~~~-----------~~~~~-------~~~~~i~~~i~-- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|+++|. ++.. ..++| .+..++++++.
T Consensus 51 ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~ 130 (382)
T TIGR03415 51 EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG 130 (382)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHH
Confidence 578999999999999999999999999999999985 3211 12333 34457777654
Q ss_pred --------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 59 --------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
+.++++.+|+.+..... ...++++++ +.||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 131 ~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~--~~~LSgGq~QRV~LARALa~--~P~ILLlDEPts~LD~~~r~~l~-~ 205 (382)
T TIGR03415 131 LEMQGMPEAERRKRVDEQLELVGLAQWADKK--PGELSGGMQQRVGLARAFAM--DADILLMDEPFSALDPLIRTQLQ-D 205 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-H
Confidence 45678888987643222 235666654 999999999 999999999999 9999999999 8
Q ss_pred HHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeee
Q 026589 122 FVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (236)
Q Consensus 122 ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~v 171 (236)
.+.++++ .++|++++. |.+.+..++++.++++..+.+....++-.+
T Consensus 206 ~L~~l~~~~~~TII~iT----Hdl~e~~~l~DrI~vl~~G~iv~~g~~~ei 252 (382)
T TIGR03415 206 ELLELQAKLNKTIIFVS----HDLDEALKIGNRIAIMEGGRIIQHGTPEEI 252 (382)
T ss_pred HHHHHHHhcCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 8888876 488998885 888888888887777777666554444333
No 109
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3e-25 Score=188.39 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-C------CcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-P------VAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-~------~~~~i~~~i~------------ 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++.+++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 105 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA 105 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHH
Confidence 5789999999999999999999999999999999976531 12333 2 2345555442
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
+.++++.+|+.+..... ...++++.+ +.||++++. +|+++|+|||++ ||+.++..+. ++++++.+ .|
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~~~-~~l~~~~~~~~ 180 (232)
T PRK10771 106 QREKLHAIARQMGIEDLLARL--PGQLSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRQEML-TLVSQVCQERQ 180 (232)
T ss_pred HHHHHHHHHHHcCcHHHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45567777776432111 234555544 999999999 999999999999 9999999999 99998865 47
Q ss_pred CcEEEEEecccccccchhhHhhhhHHH
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
.+++++. |...+...+++.++..
T Consensus 181 ~tiii~s----H~~~~~~~~~d~i~~l 203 (232)
T PRK10771 181 LTLLMVS----HSLEDAARIAPRSLVV 203 (232)
T ss_pred CEEEEEE----CCHHHHHHhCCEEEEE
Confidence 8887775 8777766766544333
No 110
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.92 E-value=3.3e-25 Score=192.16 Aligned_cols=147 Identities=17% Similarity=0.189 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC--------cCCHHHhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV--------AMDIRELI--------- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~--------~~~i~~~i--------- 57 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++.+++
T Consensus 40 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 119 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD 119 (267)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccC
Confidence 5789999999999999999999999999999999876531 12333 22 12232222
Q ss_pred --------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 58 --------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
.+.++++.+++.+...... ...++++++ ++||++++. +|+++||||||+ ||+.++..+. ++++++
T Consensus 120 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 195 (267)
T PRK15112 120 LEPEQREKQIIETLRQVGLLPDHASYY-PHMLAPGQKQRLGLARALIL--RPKVIIADEALASLDMSMRSQLI-NLMLEL 195 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCChHHHhcC-chhcCHHHHHHHHHHHHHHh--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 1456788888853221111 234666554 999999999 999999999999 9999999999 999998
Q ss_pred Hh-CCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
++ .|.+++++. |...+...+++.+++.
T Consensus 196 ~~~~g~tviivs----H~~~~~~~~~d~i~~l 223 (267)
T PRK15112 196 QEKQGISYIYVT----QHLGMMKHISDQVLVM 223 (267)
T ss_pred HHHcCcEEEEEe----CCHHHHHHhcCEEEEE
Confidence 76 488887774 8877777777544443
No 111
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=2.9e-24 Score=180.38 Aligned_cols=144 Identities=15% Similarity=0.080 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC-------CCcCCHHHhhh-------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS------------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~------------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 117 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQM 117 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHH
Confidence 4789999999999999999999999999999999876531 12333 22346666642
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEE
Q 026589 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (236)
+.++++.+++.+..... ...++++.+ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++|.++++
T Consensus 118 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii 192 (214)
T PRK13543 118 PGSALAIVGLAGYEDTL--VRQLSAGQKKRLALARLWLS--PAPLWLLDEPYANLDLEGITLVN-RMISAHLRGGGAALV 192 (214)
T ss_pred HHHHHHHcCChhhccCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 34567778876532222 245666654 999999999 999999999999 9999999999 899988777888877
Q ss_pred EEecccccccchhhHhhhhH
Q 026589 136 VYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 136 v~l~d~~~~~d~~~~~~~~l 155 (236)
++ |...+...+++.++
T Consensus 193 ~s----H~~~~~~~~~~~i~ 208 (214)
T PRK13543 193 TT----HGAYAAPPVRTRML 208 (214)
T ss_pred Ee----cChhhhhhhcceEE
Confidence 74 88887877776543
No 112
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=8.5e-25 Score=186.51 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CCcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-------~~~~~i~~~i~--------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~ 108 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSV 108 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccc
Confidence 5789999999999999999999999999999999976531 12333 22345655432
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 ---------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+|+.+..... ...++++.+ +.||++++. +|+++|+||||+ ||+.++..++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrv~laral~~--~p~~lllDEPt~~LD~~~~~~l~- 183 (242)
T TIGR03411 109 FASLFFRLSAEEKDRIEEVLETIGLADEADRL--AGLLSHGQKQWLEIGMLLMQ--DPKLLLLDEPVAGMTDEETEKTA- 183 (242)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHHH-
Confidence 34567777886532221 234555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++++ +.+++++. |...+...+|+.++.
T Consensus 184 ~~l~~~~~-~~tii~~s----H~~~~~~~~~d~i~~ 214 (242)
T TIGR03411 184 ELLKSLAG-KHSVVVVE----HDMEFVRSIADKVTV 214 (242)
T ss_pred HHHHHHhc-CCEEEEEE----CCHHHHHHhCCEEEE
Confidence 99999865 67887774 887777777764433
No 113
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.92 E-value=7.2e-25 Score=183.76 Aligned_cols=146 Identities=20% Similarity=0.271 Sum_probs=108.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CCcCCHHHhhh-----------
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~----------- 58 (236)
+-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++.+++.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~ 103 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNA 103 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccH
Confidence 35789999999999999999999999999999999976531 12333 22345555542
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-C
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R 129 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~ 129 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~ 178 (213)
T TIGR01277 104 EQQEKVVDAAQQVGIADYLDRL--PEQLSGGQRQRVALARCLVR--PNPILLLDEPFSALDPLLREEML-ALVKQLCSER 178 (213)
T ss_pred HHHHHHHHHHHHcCcHHHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhc
Confidence 34577778886432111 234555544 999999999 999999999999 9999999999 99999875 4
Q ss_pred CCcEEEEEecccccccchhhHhhhhHH
Q 026589 130 NFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+.++++++ |.......+++.++.
T Consensus 179 ~~tii~vs----h~~~~~~~~~d~v~~ 201 (213)
T TIGR01277 179 QRTLLMVT----HHLSDARAIASQIAV 201 (213)
T ss_pred CCEEEEEe----CCHHHHHhhcCeEEE
Confidence 78887775 777666666654433
No 114
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.92 E-value=1.7e-24 Score=180.13 Aligned_cols=134 Identities=18% Similarity=0.167 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-----------CCCCCC-------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~-----------~~~~~~-------~~~~~i~~~i~------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| ++..++++++.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK 104 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence 578999999999999999999999999999999997732 112333 22356666543
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++++..... ...++++.+ +.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 179 (206)
T TIGR03608 105 KLSKKEKREKKKEALEKVGLNLKLKQK--IYELSGGEQQRVALARAILK--DPPLILADEPTGSLDPKNRDEVL-DLLLE 179 (206)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcCCCCHHHHHHHH-HHHHH
Confidence 45677888886432222 234555554 999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCcEEEEEeccccccc
Q 026589 126 LKSRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~ 145 (236)
+.++|.+++++. |...
T Consensus 180 ~~~~~~tii~~s----h~~~ 195 (206)
T TIGR03608 180 LNDEGKTIIIVT----HDPE 195 (206)
T ss_pred HHhcCCEEEEEe----CCHH
Confidence 876688887774 6654
No 115
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.5e-25 Score=186.94 Aligned_cols=145 Identities=19% Similarity=0.221 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-------------CCCCCC-CC------cCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------AENFDY-PV------AMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~-------------~~~~~~-~~------~~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| ++ ..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~ 108 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC 108 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence 578999999999999999999999999999999997641 112333 22 346666542
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+.++++.+|+.+..... ...++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llilDEPt~~LD~~~~~~l~-~~ 183 (242)
T PRK11124 109 RVLGLSKDQALARAEKLLERLRLKPYADRF--PLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SI 183 (242)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCHHHHHHHH-HH
Confidence 34567777886532221 234555554 999999999 999999999999 9999999999 89
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++++++|.+++++. |.......+++.++.
T Consensus 184 l~~~~~~~~tii~~s----h~~~~~~~~~d~i~~ 213 (242)
T PRK11124 184 IRELAETGITQVIVT----HEVEVARKTASRVVY 213 (242)
T ss_pred HHHHHHcCCEEEEEe----CCHHHHHHhcCEEEE
Confidence 999876788887774 777766666654333
No 116
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.92 E-value=6.6e-25 Score=185.45 Aligned_cols=145 Identities=14% Similarity=0.244 Sum_probs=109.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCC-CC--------cCCHHHhh--------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-PV--------AMDIRELI-------------- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~-~~--------~~~i~~~i-------------- 57 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++.+++
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 86 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRP 86 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccCC
Confidence 5789999999999999999999999999999999987521 22223 11 12444432
Q ss_pred ------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 58 ------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 58 ------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
.+.++++.+++.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 87 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~ 161 (223)
T TIGR03771 87 CVADFAAVRDALRRVGLTELADRP--VGELSGGQRQRVLVARALAT--RPSVLLLDEPFTGLDMPTQELLT-ELFIELAG 161 (223)
T ss_pred cHHHHHHHHHHHHHhCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 145677888887543222 234656554 999999999 999999999999 9999999999 88999876
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHH
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+|.+++++. |...+...+++.+++
T Consensus 162 ~~~tvii~s----H~~~~~~~~~d~i~~ 185 (223)
T TIGR03771 162 AGTAILMTT----HDLAQAMATCDRVVL 185 (223)
T ss_pred cCCEEEEEe----CCHHHHHHhCCEEEE
Confidence 788887774 777777777765443
No 117
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=7e-25 Score=185.69 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-C------CcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRR 106 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcc
Confidence 5789999999999999999999999999999999876421 22334 2 2346666553
Q ss_pred ----HHHHHHHhC-CCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-
Q 026589 59 ----LEDVMEELG-LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (236)
Q Consensus 59 ----~~~~l~~~~-l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~- 129 (236)
..++++.++ ++..... ....++++.+ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++
T Consensus 107 ~~~~~~~~l~~~~~l~~~~~~--~~~~LS~G~~qrv~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~ 181 (230)
T TIGR03410 107 SRKIPDEIYELFPVLKEMLGR--RGGDLSGGQQQQLAIARALVT--RPKLLLLDEPTEGIQPSIIKDIG-RVIRRLRAEG 181 (230)
T ss_pred hHHHHHHHHHHHHhHHHHhhC--ChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHHcC
Confidence 233455554 3321111 1234555544 999999999 999999999999 9999999999 999988764
Q ss_pred CCcEEEEEecccccccchhhHhhhh
Q 026589 130 NFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
+.++++++ |.......+++.+
T Consensus 182 ~~tii~~s----H~~~~~~~~~d~v 202 (230)
T TIGR03410 182 GMAILLVE----QYLDFARELADRY 202 (230)
T ss_pred CcEEEEEe----CCHHHHHHhCCEE
Confidence 78887774 7777666666533
No 118
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=3.3e-25 Score=184.73 Aligned_cols=163 Identities=14% Similarity=0.109 Sum_probs=117.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CCcCCHHHhhhHHH-----
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELISLED----- 61 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-------~~~~~i~~~i~~~~----- 61 (236)
+.+++++||||+|||||+|+|+|+.++.+|+|.+.|.|+.. ..+.| ++.+||+|++.+--
T Consensus 29 Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~ 108 (237)
T COG0410 29 GEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD 108 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc
Confidence 46899999999999999999999999999999999999753 23444 34667777764110
Q ss_pred -------HHHHhCCCCCCchhh--hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026589 62 -------VMEELGLGPNGGLIY--CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (236)
Q Consensus 62 -------~l~~~~l~~~~~~~~--~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (236)
.=+-+.+-|....+. ....++++.+ ++|||||+. +|++|+||||+. |-|....++. +.+++++++
T Consensus 109 ~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~--~PklLLLDEPs~GLaP~iv~~I~-~~i~~l~~~ 185 (237)
T COG0410 109 KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIKELRKE 185 (237)
T ss_pred cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc--CCCEEEecCCccCcCHHHHHHHH-HHHHHHHHc
Confidence 111222223211110 0123444432 899999999 999999999998 9999999999 999999865
Q ss_pred -CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeee
Q 026589 130 -NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (236)
Q Consensus 130 -~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~v 171 (236)
|.+|+.|- ++..-..++.++..++..+.+.++.|.-.+
T Consensus 186 ~g~tIlLVE----Qn~~~Al~iaDr~yvle~Griv~~G~~~eL 224 (237)
T COG0410 186 GGMTILLVE----QNARFALEIADRGYVLENGRIVLSGTAAEL 224 (237)
T ss_pred CCcEEEEEe----ccHHHHHHhhCEEEEEeCCEEEEecCHHHH
Confidence 77888885 666666677766666666666666655333
No 119
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.92 E-value=4.2e-25 Score=186.73 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC-----CCCCceEEEeccCCCC---------CCCCC-CC-----cCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l-----~~~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 106 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLR 106 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHH
Confidence 578999999999999999999999 9999999999976421 12333 22 245655542
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+.++++.+|+.+..........++++++ ++||++++. +|+++|+||||+ ||+.++..++ ++
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~ 183 (227)
T cd03260 107 LHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN--EPEVLLLDEPTSALDPISTAKIE-EL 183 (227)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 3456777788653211110134556554 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
+++++++ .+++++. |.......+++.++....+
T Consensus 184 l~~~~~~-~tii~~s----H~~~~~~~~~d~i~~l~~G 216 (227)
T cd03260 184 IAELKKE-YTIVIVT----HNMQQAARVADRTAFLLNG 216 (227)
T ss_pred HHHHhhC-cEEEEEe----ccHHHHHHhCCEEEEEeCC
Confidence 9998766 7776664 8777666777654444333
No 120
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.92 E-value=6e-25 Score=190.25 Aligned_cols=146 Identities=16% Similarity=0.205 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC---------CCcCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~---------~~~~~i~~~i~----- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+.| .+..++++++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 117 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH 117 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999976531 12333 22345555431
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 ------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
+.++++.+++....... ....++++++ +.||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~LSgGe~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~-~~l 193 (265)
T TIGR02769 118 LTSLDESEQKARIAELLDMVGLRSEDADK-LPRQLSGGQLQRINIARALAV--KPKLIVLDEAVSNLDMVLQAVIL-ELL 193 (265)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCChhhhhC-ChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 45677888885321111 1234566554 999999999 999999999999 9999999999 999
Q ss_pred HHHHhC-CCcEEEEEecccccccchhhHhhhhHH
Q 026589 124 DHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 124 ~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++++. |.+++++. |.......+++.+++
T Consensus 194 ~~~~~~~g~tiiivs----H~~~~~~~~~d~i~~ 223 (265)
T TIGR02769 194 RKLQQAFGTAYLFIT----HDLRLVQSFCQRVAV 223 (265)
T ss_pred HHHHHhcCcEEEEEe----CCHHHHHHHhcEEEE
Confidence 998764 88887775 887777777654333
No 121
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=7.1e-25 Score=189.17 Aligned_cols=146 Identities=18% Similarity=0.272 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C------CcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~------~~~~i~~~i~---------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 108 (258)
T PRK13548 29 EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSR 108 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCc
Confidence 5789999999999999999999999999999999976421 12233 1 2345666542
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHh------cCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 ------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~------~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
+.++++.+++....... ...++++.+ ++||++++ . +|+++|+||||+ ||+.++..+. +++
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGe~qrv~la~al~~~~~~~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 183 (258)
T PRK13548 109 AEDDALVAAALAQVDLAHLAGRD--YPQLSGGEQQRVQLARVLAQLWEPDG--PPRWLLLDEPTSALDLAHQHHVL-RLA 183 (258)
T ss_pred HHHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhcccccCC--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 34567777876432221 234555544 99999999 5 899999999999 9999999999 999
Q ss_pred HHHH-hCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 124 DHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 124 ~~l~-~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
++++ +.|.+|+++. |.......+++.++..
T Consensus 184 ~~~~~~~~~tiii~s----H~~~~~~~~~d~i~~l 214 (258)
T PRK13548 184 RQLAHERGLAVIVVL----HDLNLAARYADRIVLL 214 (258)
T ss_pred HHHHHhcCCEEEEEE----CCHHHHHHhcCEEEEE
Confidence 9987 5688887774 8877777777644443
No 122
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.92 E-value=4.9e-25 Score=189.85 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------------CCCCC-C------CcCCHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENFDY-P------VAMDIRE 55 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------------------~~~~~-~------~~~~i~~ 55 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++++
T Consensus 32 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~e 111 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 111 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHH
Confidence 5789999999999999999999999999999999976421 22343 2 2346666
Q ss_pred hhh-----------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhH
Q 026589 56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (236)
Q Consensus 56 ~i~-----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~ 115 (236)
++. +.++++.+|+....... ....++++.+ +.||++++. +|+++|+||||+ ||+.++
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~ 188 (257)
T PRK10619 112 NVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGK-YPVHLSGGQQQRVSIARALAM--EPEVLLFDEPTSALDPELV 188 (257)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhC-CcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHH
Confidence 652 34677888886531011 1234666654 999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhH
Q 026589 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
..+. ++++++++.|.++++++ |.......++++++
T Consensus 189 ~~l~-~~l~~l~~~g~tiiivs----H~~~~~~~~~d~i~ 223 (257)
T PRK10619 189 GEVL-RIMQQLAEEGKTMVVVT----HEMGFARHVSSHVI 223 (257)
T ss_pred HHHH-HHHHHHHhcCCEEEEEe----CCHHHHHHhcCEEE
Confidence 9999 99999977788888775 77776666665333
No 123
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8e-25 Score=191.77 Aligned_cols=156 Identities=16% Similarity=0.097 Sum_probs=115.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC------------CCCCCC-CCc-------CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------------AENFDY-PVA-------MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~------------~~~~~~-~~~-------~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...++| +++ .++++++.
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 117 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPV 117 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHH
Confidence 478999999999999999999999999999999987642 112333 221 24555442
Q ss_pred ------------HHHHHHHhCCC-CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 ------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 ------------~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+.++++.+++. ..... ....+++|++ ++||++++. +|+++||||||+ ||+.++..++ ++
T Consensus 118 ~~~~~~~~~~~~~~~ll~~~~L~~~~~~~--~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~ 192 (289)
T PRK13645 118 NLGENKQEAYKKVPELLKLVQLPEDYVKR--SPFELSGGQKRRVALAGIIAM--DGNTLVLDEPTGGLDPKGEEDFI-NL 192 (289)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCChhHhcC--ChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 34567777773 22111 1245666654 999999999 999999999999 9999999999 99
Q ss_pred HHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
++++.+ .|.+++++. |...+...+++.+++...+.+....+
T Consensus 193 l~~~~~~~~~tiiiis----H~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 193 FERLNKEYKKRIIMVT----HNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHhcCCEEEEEe----cCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 998875 488887774 88877778887776666555543333
No 124
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.5e-25 Score=186.80 Aligned_cols=145 Identities=16% Similarity=0.187 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-C------CcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 111 (237)
T PRK11614 32 EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERD 111 (237)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChh
Confidence 5789999999999999999999999999999999976521 12333 2 2345666543
Q ss_pred -----HHHHHHHh-CCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026589 59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (236)
Q Consensus 59 -----~~~~l~~~-~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (236)
+.++++.+ ++.+... .....++++.+ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++
T Consensus 112 ~~~~~~~~~l~~~~~l~~~~~--~~~~~LS~G~~qrl~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~ 186 (237)
T PRK11614 112 QFQERIKWVYELFPRLHERRI--QRAGTMSGGEQQMLAIGRALMS--QPRLLLLDEPSLGLAPIIIQQIF-DTIEQLREQ 186 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--CchhhCCHHHHHHHHHHHHHHh--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHC
Confidence 23334444 2432111 11234555544 999999999 999999999999 9999999999 899998777
Q ss_pred CCcEEEEEecccccccchhhHhhhhHH
Q 026589 130 NFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
|.+++++. |...+...+++.+++
T Consensus 187 ~~tiii~s----H~~~~~~~~~d~i~~ 209 (237)
T PRK11614 187 GMTIFLVE----QNANQALKLADRGYV 209 (237)
T ss_pred CCEEEEEe----CcHHHHHhhCCEEEE
Confidence 88887774 877777777754333
No 125
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=3.4e-24 Score=178.59 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 107 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDD 107 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHH
Confidence 4789999999999999999999999999999999876531 11222 23456666543
Q ss_pred --HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcE
Q 026589 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (236)
Q Consensus 59 --~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (236)
++++++.+|+.+.... ....++++.+ ++||++++. +|+++|+||||+ ||+.++..+. ++++++++++.++
T Consensus 108 ~~~~~~l~~~gl~~~~~~--~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ti 182 (204)
T PRK13538 108 EALWEALAQVGLAGFEDV--PVRQLSAGQQRRVALARLWLT--RAPLWILDEPFTAIDKQGVARLE-ALLAQHAEQGGMV 182 (204)
T ss_pred HHHHHHHHHcCCHHHhhC--ChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEE
Confidence 4567888888643221 1234666544 999999999 999999999999 9999999999 9999987667888
Q ss_pred EEEEecccccccch
Q 026589 134 CAVYLLDSQFITDV 147 (236)
Q Consensus 134 i~v~l~d~~~~~d~ 147 (236)
+++. |.....
T Consensus 183 ii~s----h~~~~i 192 (204)
T PRK13538 183 ILTT----HQDLPV 192 (204)
T ss_pred EEEe----cChhhh
Confidence 7774 555433
No 126
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.6e-25 Score=189.09 Aligned_cols=148 Identities=17% Similarity=0.209 Sum_probs=110.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCc-----CCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 109 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV 109 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHH
Confidence 4789999999999999999999999999999999976521 22333 222 35555443
Q ss_pred -HHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCc
Q 026589 59 -LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFN 132 (236)
Q Consensus 59 -~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ 132 (236)
+.++++.+++.+ .... ....++++.+ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++ .|.+
T Consensus 110 ~~~~~l~~~~l~~~~~~~--~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~t 184 (241)
T PRK14250 110 DVEYYLSIVGLNKEYATR--DVKNLSGGEAQRVSIARTLAN--NPEVLLLDEPTSALDPTSTEIIE-ELIVKLKNKMNLT 184 (241)
T ss_pred HHHHHHHHcCCCHHHhhC--CcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCE
Confidence 456778888862 2111 1234555554 999999999 999999999999 9999999999 99999876 4888
Q ss_pred EEEEEecccccccchhhHhhhhHHHHH
Q 026589 133 VCAVYLLDSQFITDVTKFISGCMASLS 159 (236)
Q Consensus 133 ii~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (236)
++++. |...+...+++.++....
T Consensus 185 ii~~s----H~~~~~~~~~d~i~~l~~ 207 (241)
T PRK14250 185 VIWIT----HNMEQAKRIGDYTAFLNK 207 (241)
T ss_pred EEEEe----ccHHHHHHhCCEEEEEeC
Confidence 87774 887776677764444433
No 127
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.2e-25 Score=191.41 Aligned_cols=156 Identities=16% Similarity=0.143 Sum_probs=119.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~--------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~ 110 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD 110 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCC
Confidence 5789999999999999999999999999999999986532 12333 11 235665553
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
+.++++.+++.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 111 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrl~laraL~~--~p~llilDEPt~gLD~~~~~~l~-~~l~~l~~ 185 (277)
T PRK13652 111 EETVAHRVSSALHMLGLEELRDRV--PHHLSGGEKKRVAIAGVIAM--EPQVLVLDEPTAGLDPQGVKELI-DFLNDLPE 185 (277)
T ss_pred HHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 45677788887543222 234666654 999999999 999999999999 9999999999 99999876
Q ss_pred C-CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 129 ~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
+ |.++++++ |...+...+++++++...+.+....+
T Consensus 186 ~~g~tvli~t----H~~~~~~~~~drv~~l~~G~i~~~g~ 221 (277)
T PRK13652 186 TYGMTVIFST----HQLDLVPEMADYIYVMDKGRIVAYGT 221 (277)
T ss_pred hcCCEEEEEe----cCHHHHHHhCCEEEEEECCeEEEECC
Confidence 4 88887775 88888888888777766666554433
No 128
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.91 E-value=5.6e-25 Score=195.87 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=114.7
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CCcCCHHHhhh----------------
Q 026589 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS---------------- 58 (236)
Q Consensus 7 iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~---------------- 58 (236)
|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++..++++++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 589999999999999999999999999999976532 22333 33456776653
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEE
Q 026589 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVC 134 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii 134 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|||||++ ||+.++..+. ++++++.+ .|.+++
T Consensus 81 ~~~~l~~~~l~~~~~~~--~~~LSgGq~qRvalaraL~~--~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~tii 155 (325)
T TIGR01187 81 VLEALRLVQLEEFADRK--PHQLSGGQQQRVALARALVF--KPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHcCCcchhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEE
Confidence 45677888887543322 245666654 999999999 999999999999 9999999999 88888875 488888
Q ss_pred EEEecccccccchhhHhhhhHHHHHHHHhh
Q 026589 135 AVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (236)
Q Consensus 135 ~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~ 164 (236)
+++ |...+...+++.+++...+.+..
T Consensus 156 ivT----Hd~~e~~~~~d~i~vl~~G~i~~ 181 (325)
T TIGR01187 156 FVT----HDQEEAMTMSDRIAIMRKGKIAQ 181 (325)
T ss_pred EEe----CCHHHHHHhCCEEEEEECCEEEE
Confidence 775 88887788887666665555443
No 129
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.91 E-value=1.6e-24 Score=184.51 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC--------CCcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY--------PVAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~--------~~~~~i~~~i~---------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 127 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP 127 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH
Confidence 5789999999999999999999999999999999875421 12222 22345665542
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026589 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (236)
Q Consensus 59 ------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (236)
+.++++.+++.+..... ...++++.+ +.||++++. +|+++|+||||+ ||+.++..+. +++++++++
T Consensus 128 ~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~ 202 (236)
T cd03267 128 ARFKKRLDELSELLDLEELLDTP--VRQLSLGQRMRAEIAAALLH--EPEILFLDEPTIGLDVVAQENIR-NFLKEYNRE 202 (236)
T ss_pred HHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHhc
Confidence 34566777776432221 245666654 899999999 999999999999 9999999999 999998654
Q ss_pred -CCcEEEEEecccccccchhhHhhhhHH
Q 026589 130 -NFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 130 -~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+.+++++. |.......+++.++.
T Consensus 203 ~~~tiiivs----H~~~~~~~~~d~i~~ 226 (236)
T cd03267 203 RGTTVLLTS----HYMKDIEALARRVLV 226 (236)
T ss_pred CCCEEEEEe----cCHHHHHHhCCEEEE
Confidence 77887774 777766666654433
No 130
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.91 E-value=1.6e-24 Score=182.96 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC---------CCcCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~---------~~~~~i~~~i~----- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~ 111 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI 111 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHh
Confidence 5799999999999999999999999999999999976531 12333 12345655542
Q ss_pred -------------HHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 59 -------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 59 -------------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
+.++++.+++.. .... ....++++++ ++||++++. +|+++||||||+ ||+.++..+. +
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 186 (228)
T cd03257 112 HGKLSKKEARKEAVLLLLVGVGLPEEVLNR--YPHELSGGQRQRVAIARALAL--NPKLLIADEPTSALDVSVQAQIL-D 186 (228)
T ss_pred ccCCcHHHHHHHHHHHHHHHCCCChhHhhC--CchhcCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-H
Confidence 124556677742 2111 1234555544 999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhC-CCcEEEEEecccccccchhhHhhhhHH
Q 026589 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++++ |.+++++. |.......+++.++.
T Consensus 187 ~l~~~~~~~~~tii~~s----H~~~~~~~~~d~i~~ 218 (228)
T cd03257 187 LLKKLQEELGLTLLFIT----HDLGVVAKIADRVAV 218 (228)
T ss_pred HHHHHHHHcCCEEEEEe----CCHHHHHHhcCeEEE
Confidence 99998765 78887774 777766666654443
No 131
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.9e-24 Score=177.16 Aligned_cols=143 Identities=17% Similarity=0.269 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCC-----ceEEEeccCCCCC---------CCCC------CCcCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-----RTMHIVNLDPAAE---------NFDY------PVAMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~-----G~i~i~~~d~~~~---------~~~~------~~~~~i~~~i~---- 58 (236)
.++++|||+|||||||+|+++.+..... |+|.+.|.++... .++. |...+|+|++.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r 113 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLR 113 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHH
Confidence 5799999999999999999999987765 9999999887431 1111 12357888875
Q ss_pred ------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 59 ------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 59 ------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
+++.++...|...- .+..+.-.+++|++ +.|||+++. +|++|++||||+ |||.+..++- +
T Consensus 114 ~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv--~PeVlLmDEPtSALDPIsT~kIE-e 190 (253)
T COG1117 114 LHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV--KPEVLLMDEPTSALDPISTLKIE-E 190 (253)
T ss_pred hhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc--CCcEEEecCcccccCchhHHHHH-H
Confidence 44455554443210 01011123555543 999999999 999999999999 9999999998 9
Q ss_pred HHHHHHhCCCcEEEEEecccccccchhhHhhh
Q 026589 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (236)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~ 153 (236)
++.+|+ +..||++|+ |.+..+++..+.
T Consensus 191 Li~eLk-~~yTIviVT----HnmqQAaRvSD~ 217 (253)
T COG1117 191 LITELK-KKYTIVIVT----HNMQQAARVSDY 217 (253)
T ss_pred HHHHHH-hccEEEEEe----CCHHHHHHHhHh
Confidence 999996 578999886 888777776553
No 132
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.91 E-value=1.2e-24 Score=184.58 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC----CCceEEEeccCCCC-----CCCCC---------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY---------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~----~~G~i~i~~~d~~~-----~~~~~---------~~~~~i~~~i~------ 58 (236)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~ 92 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL 92 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHc
Confidence 57999999999999999999999999 89999999976531 12333 22234433321
Q ss_pred ----------HHHHHHHhCCCCCC-chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~-~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~ 124 (236)
+.++++.+++.... ........++++.+ ++||++++. +|+++||||||+ ||+.++..+. ++++
T Consensus 93 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~vllLDEPt~~LD~~~~~~l~-~~l~ 169 (230)
T TIGR02770 93 GKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL--EPPFLIADEPTTDLDVVNQARVL-KLLR 169 (230)
T ss_pred CccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-HHHH
Confidence 45677788886210 01111234555554 999999999 999999999999 9999999999 9999
Q ss_pred HHHh-CCCcEEEEEecccccccchhhHhhhhH
Q 026589 125 HLKS-RNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 125 ~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
++++ .|.+++++. |...+...+++.++
T Consensus 170 ~~~~~~~~tiii~s----H~~~~~~~~~d~i~ 197 (230)
T TIGR02770 170 ELRQLFGTGILLIT----HDLGVVARIADEVA 197 (230)
T ss_pred HHHHhcCCEEEEEe----CCHHHHHHhCCEEE
Confidence 8876 478887774 88777777765333
No 133
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.91 E-value=1.6e-24 Score=184.74 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCCC--------CCCCC-CC------cCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l--~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~------- 58 (236)
.+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~ 106 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR 106 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhh
Confidence 478999999999999999999995 7999999999976531 11333 22 233443321
Q ss_pred ----------------HHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 59 ----------------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
+.++++.+++.+ ..... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l 183 (243)
T TIGR01978 107 SARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-VNEGFSGGEKKRNEILQMALL--EPKLAILDEIDSGLDIDALKIV 183 (243)
T ss_pred cccccccccHHHHHHHHHHHHHHcCCchhhcccc-cccCcCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHH
Confidence 345666777763 21111 1112555544 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhH-hh
Q 026589 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF-IS 152 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~-~~ 152 (236)
. +++++++++|.+++++. |.......+ ++
T Consensus 184 ~-~~l~~~~~~~~tvi~vs----H~~~~~~~~~~d 213 (243)
T TIGR01978 184 A-EGINRLREPDRSFLIIT----HYQRLLNYIKPD 213 (243)
T ss_pred H-HHHHHHHHCCcEEEEEE----ecHHHHHhhcCC
Confidence 9 99999877788887774 777666555 44
No 134
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=2.8e-24 Score=184.41 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--CCCCCCCCcCCHHHhhh------------HHHHHHHhCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL 68 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i~------------~~~~l~~~~l 68 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|..++ .+........++++++. ..++++.+++
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999885332 12222223346666553 3457777887
Q ss_pred CCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEecccccc
Q 026589 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI 144 (236)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~ 144 (236)
...... ....++++.+ ++||++++. +|+++||||||+ ||+.++..+. ++++++++ .+.+++++. |.+
T Consensus 106 ~~~~~~--~~~~LSgGe~qrv~iaraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiivs----Hd~ 176 (246)
T cd03237 106 EQILDR--EVPELSGGELQRVAIAACLSK--DADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNEKTAFVVE----HDI 176 (246)
T ss_pred HHHhhC--ChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEe----CCH
Confidence 643211 1245666654 999999999 999999999999 9999999999 99999875 478888775 887
Q ss_pred cchhhHhhhhHH
Q 026589 145 TDVTKFISGCMA 156 (236)
Q Consensus 145 ~d~~~~~~~~l~ 156 (236)
.....+++.++.
T Consensus 177 ~~~~~~~d~i~~ 188 (246)
T cd03237 177 IMIDYLADRLIV 188 (246)
T ss_pred HHHHHhCCEEEE
Confidence 766667665444
No 135
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.91 E-value=1.9e-24 Score=182.79 Aligned_cols=136 Identities=19% Similarity=0.203 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-C------CcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P------VAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~------~~~~i~~~i~------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++.+++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~ 116 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR 116 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999876521 12333 2 2345655542
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++....... ...++++.+ +.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 117 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 191 (228)
T PRK10584 117 GESSRQSRNGAKALLEQLGLGKRLDHL--PAQLSGGEQQRVALARAFNG--RPDVLFADEPTGNLDRQTGDKIA-DLLFS 191 (228)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 45567788886432211 234555544 999999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCcEEEEEecccccccch
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~ 147 (236)
+++ .|.+|+++. |.....
T Consensus 192 ~~~~~~~tii~~s----H~~~~~ 210 (228)
T PRK10584 192 LNREHGTTLILVT----HDLQLA 210 (228)
T ss_pred HHHhcCCEEEEEe----cCHHHH
Confidence 865 478887774 665543
No 136
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=1.9e-24 Score=202.63 Aligned_cols=152 Identities=13% Similarity=0.154 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-C------CcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 31 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 110 (501)
T PRK10762 31 RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF 110 (501)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccccc
Confidence 5799999999999999999999999999999999876521 22333 2 2345555431
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026589 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (236)
Q Consensus 59 -----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~ 124 (236)
+.++++.+|++...... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ ++++
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~ 185 (501)
T PRK10762 111 GRIDWKKMYAEADKLLARLNLRFSSDKL--VGELSIGEQQMVEIAKVLSF--ESKVIIMDEPTDALTDTETESLF-RVIR 185 (501)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcCCCCHHHHHHHH-HHHH
Confidence 45678888887643222 346777765 999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026589 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
++++.|.+++++. |...+...+|+.++....+.+.
T Consensus 186 ~l~~~~~tvii~s----Hd~~~~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 186 ELKSQGRGIVYIS----HRLKEIFEICDDVTVFRDGQFI 220 (501)
T ss_pred HHHHCCCEEEEEe----CCHHHHHHhCCEEEEEeCCEEE
Confidence 9977788887775 8888888888877766555543
No 137
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=9.1e-25 Score=194.62 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=118.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-CC--------cCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV--------AMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~~--------~~~i~~~i~----- 58 (236)
.+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++.+++.
T Consensus 42 e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~ 121 (327)
T PRK11308 42 KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI 121 (327)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH
Confidence 5799999999999999999999999999999999987532 12333 22 234443331
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 ------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
+.++++.+|+.+.....+. ..++++++ ++||++++. +|++||+||||+ ||..++..++ +++
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p-~~LSgGq~QRv~iArAL~~--~P~lLilDEPts~LD~~~~~~i~-~lL 197 (327)
T PRK11308 122 NTSLSAAERREKALAMMAKVGLRPEHYDRYP-HMFSGGQRQRIAIARALML--DPDVVVADEPVSALDVSVQAQVL-NLM 197 (327)
T ss_pred ccCCCHHHHHHHHHHHHHHCCCChHHhcCCC-ccCCHHHHHHHHHHHHHHc--CCCEEEEECCCccCCHHHHHHHH-HHH
Confidence 5678888898643222222 35666654 999999999 999999999999 9999999999 999
Q ss_pred HHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
+++++ .|.++++++ |++.....+++.++++..+.+....+
T Consensus 198 ~~l~~~~g~til~iT----Hdl~~~~~~adrv~vm~~G~ive~g~ 238 (327)
T PRK11308 198 MDLQQELGLSYVFIS----HDLSVVEHIADEVMVMYLGRCVEKGT 238 (327)
T ss_pred HHHHHHcCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99876 488998885 88887777887665555555544433
No 138
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.91 E-value=8.3e-24 Score=175.41 Aligned_cols=130 Identities=19% Similarity=0.133 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQR 106 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHH
Confidence 5789999999999999999999999999999999976421 12223 22356666543
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEE
Q 026589 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (236)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++++||||+ ||+.++..++ +++++++++|.+++
T Consensus 107 ~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii 181 (198)
T TIGR01189 107 TIEDALAAVGLTGFEDLP--AAQLSAGQQRRLALARLWLS--RAPLWILDEPTTALDKAGVALLA-GLLRAHLARGGIVL 181 (198)
T ss_pred HHHHHHHHcCCHHHhcCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 45667778886532221 245666554 999999999 999999999999 9999999999 99998876788877
Q ss_pred EEE
Q 026589 135 AVY 137 (236)
Q Consensus 135 ~v~ 137 (236)
++.
T Consensus 182 ~~s 184 (198)
T TIGR01189 182 LTT 184 (198)
T ss_pred EEE
Confidence 764
No 139
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.91 E-value=1.8e-24 Score=203.26 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-C------CcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++++++.
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 117 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS 117 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHH
Confidence 5789999999999999999999999999999999876532 12333 2 2356766653
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCc
Q 026589 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (236)
Q Consensus 59 ---~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (236)
+.++++.+++....... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++++++++|.+
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~aL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~t 192 (510)
T PRK15439 118 MQKMKQLLAALGCQLDLDSS--AGSLEVADRQIVEILRGLMR--DSRILILDEPTASLTPAETERLF-SRIRELLAQGVG 192 (510)
T ss_pred HHHHHHHHHHcCCCccccCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCE
Confidence 45678889987543222 345777655 999999999 999999999999 9999999999 999999777888
Q ss_pred EEEEEecccccccchhhHhhhhHHHHHHHH
Q 026589 133 VCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 133 ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
|+++. |.......+|+.+++...+.+
T Consensus 193 iiivt----Hd~~~~~~~~d~i~~l~~G~i 218 (510)
T PRK15439 193 IVFIS----HKLPEIRQLADRISVMRDGTI 218 (510)
T ss_pred EEEEe----CCHHHHHHhCCEEEEEECCEE
Confidence 87775 888777777776655544444
No 140
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.91 E-value=3.4e-24 Score=175.68 Aligned_cols=129 Identities=15% Similarity=0.237 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CCc---------CCHHHhhhHHHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PVA---------MDIRELISLEDVME 64 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~~---------~~i~~~i~~~~~l~ 64 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| +++ .++++++.....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-- 104 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-- 104 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh--
Confidence 4789999999999999999999999999999999976532 12333 222 344444322100
Q ss_pred HhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEeccc
Q 026589 65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (236)
Q Consensus 65 ~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~ 141 (236)
++++++ ++||++++. +|+++|+|||++ ||+.++..+. ++++++++++.+++++.
T Consensus 105 ----------------LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~s---- 161 (182)
T cd03215 105 ----------------LSGGNQQKVVLARWLAR--DPRVLILDEPTRGVDVGAKAEIY-RLIRELADAGKAVLLIS---- 161 (182)
T ss_pred ----------------cCHHHHHHHHHHHHHcc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEe----
Confidence 334433 899999999 999999999999 9999999999 99999876678887774
Q ss_pred ccccchhhHhhhhHH
Q 026589 142 QFITDVTKFISGCMA 156 (236)
Q Consensus 142 ~~~~d~~~~~~~~l~ 156 (236)
|...+..++++.++.
T Consensus 162 h~~~~~~~~~d~v~~ 176 (182)
T cd03215 162 SELDELLGLCDRILV 176 (182)
T ss_pred CCHHHHHHhCCEEEE
Confidence 887777777765443
No 141
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.2e-24 Score=188.28 Aligned_cols=150 Identities=25% Similarity=0.382 Sum_probs=110.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C------CcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~------~~~~i~~~i~---------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++.+++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL 117 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccc
Confidence 5789999999999999999999999999999999976421 12223 1 2234544432
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++.+..... ...++++.+ ++||++++. +|+++||||||+ ||+.++..+. +++++
T Consensus 118 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~ 192 (265)
T PRK10575 118 GRFGAADREKVEEAISLVGLKPLAHRL--VDSLSGGERQRAWIAMLVAQ--DSRCLLLDEPTSALDIAHQVDVL-ALVHR 192 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 34566777775422111 234555544 999999999 999999999999 9999999999 99999
Q ss_pred HHhC-CCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 126 l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
++++ |.+++++. |.......+++.++....+.
T Consensus 193 l~~~~~~tiii~s----H~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 193 LSQERGLTVIAVL----HDINMAARYCDYLVALRGGE 225 (265)
T ss_pred HHHhcCCEEEEEe----CCHHHHHHhCCEEEEEECCe
Confidence 8764 78887774 88877777776554444433
No 142
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.3e-24 Score=189.18 Aligned_cols=150 Identities=16% Similarity=0.178 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CC-------cCCHHHhhh--------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV-------AMDIRELIS-------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~-------~~~i~~~i~-------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~ 108 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCL 108 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCC
Confidence 5789999999999999999999999999999999976531 12333 11 235555542
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
+.++++.+|+....... ...++++++ ++||++++. +|+++|+||||+ ||+.++..++ +++++++
T Consensus 109 ~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~ 183 (274)
T PRK13644 109 PPIEIRKRVDRALAEIGLEKYRHRS--PKTLSGGQGQCVALAGILTM--EPECLIFDEVTSMLDPDSGIAVL-ERIKKLH 183 (274)
T ss_pred CHHHHHHHHHHHHHHCCCHHHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 45567778886532221 234566554 999999999 999999999999 9999999999 9999987
Q ss_pred hCCCcEEEEEecccccccchhhHhhhhHHHHHHHH
Q 026589 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
++|.++++++ |...+. ..++.+++...+.+
T Consensus 184 ~~g~til~~t----H~~~~~-~~~d~v~~l~~G~i 213 (274)
T PRK13644 184 EKGKTIVYIT----HNLEEL-HDADRIIVMDRGKI 213 (274)
T ss_pred hCCCEEEEEe----cCHHHH-hhCCEEEEEECCEE
Confidence 7788887774 776654 34654444444443
No 143
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.9e-24 Score=186.01 Aligned_cols=150 Identities=18% Similarity=0.312 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CCcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-------~~~~~i~~~i~---------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~ 108 (255)
T PRK11231 29 KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW 108 (255)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc
Confidence 4789999999999999999999999999999999876421 12333 12335555432
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++.+..... ...+++|++ +.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~ 183 (255)
T PRK11231 109 GRLSAEDNARVNQAMEQTRINHLADRR--LTDLSGGQRQRAFLAMVLAQ--DTPVVLLDEPTTYLDINHQVELM-RLMRE 183 (255)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 34556667775422111 234555544 999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
++++|.+++++. |...+...+++.++....+.
T Consensus 184 l~~~~~tiii~t----H~~~~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 184 LNTQGKTVVTVL----HDLNQASRYCDHLVVLANGH 215 (255)
T ss_pred HHHCCCEEEEEE----CCHHHHHHhcCEEEEEECCe
Confidence 876788887774 88887777777555544443
No 144
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.3e-24 Score=189.57 Aligned_cols=151 Identities=14% Similarity=0.141 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~--------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~ 113 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP 113 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCC
Confidence 4789999999999999999999999999999999987632 12333 22 235666653
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
+.++++.+||.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~ 188 (279)
T PRK13635 114 REEMVERVDQALRQVGMEDFLNRE--PHRLSGGQKQRVAIAGVLAL--QPDIIILDEATSMLDPRGRREVL-ETVRQLKE 188 (279)
T ss_pred HHHHHHHHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 45677788887543222 235666654 999999999 999999999999 9999999999 99999976
Q ss_pred C-CCcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026589 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 129 ~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
+ |.+|+++. |...... .++++++...+.+.
T Consensus 189 ~~~~tilivs----H~~~~~~-~~d~i~~l~~G~i~ 219 (279)
T PRK13635 189 QKGITVLSIT----HDLDEAA-QADRVIVMNKGEIL 219 (279)
T ss_pred cCCCEEEEEe----cCHHHHH-cCCEEEEEECCEEE
Confidence 5 88887774 7766554 36655554444443
No 145
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.91 E-value=2e-24 Score=185.51 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--------------------CCCCCC-------CCcCCHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE 55 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--------------------~~~~~~-------~~~~~i~~ 55 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| .+..++.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 106 (252)
T TIGR03005 27 EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLD 106 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHH
Confidence 578999999999999999999999999999999987542 112333 22345555
Q ss_pred hhh-----------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhH
Q 026589 56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (236)
Q Consensus 56 ~i~-----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~ 115 (236)
++. +.++++.+|+.+.... ....++++.+ ++||++++. +|+++|+||||+ ||+.++
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~ 182 (252)
T TIGR03005 107 NVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH--MPAQLSGGQQQRVAIARALAM--RPKVMLFDEVTSALDPELV 182 (252)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc--ChhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHH
Confidence 442 4566777887643211 1234555544 999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhh
Q 026589 116 VPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 116 ~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
..+. ++++++.+ .|.+++++. |...+...+++.+
T Consensus 183 ~~l~-~~l~~~~~~~~~tiiivs----H~~~~~~~~~d~i 217 (252)
T TIGR03005 183 GEVL-NVIRRLASEHDLTMLLVT----HEMGFAREFADRV 217 (252)
T ss_pred HHHH-HHHHHHHHhcCcEEEEEe----CCHHHHHHhcCEE
Confidence 9999 99999876 488888775 7777666666533
No 146
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.3e-24 Score=189.77 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CCc-------CCHHHhhh--------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PVA-------MDIRELIS-------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~~-------~~i~~~i~-------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 37 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~ 116 (280)
T PRK13633 37 EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGI 116 (280)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCC
Confidence 4789999999999999999999999999999999976531 12333 221 23444332
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
++++++.+|+.+..... ...++++++ +.||++++. +|+++|+|||++ ||+.++..+. +++++++
T Consensus 117 ~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l~ 191 (280)
T PRK13633 117 PPEEIRERVDESLKKVGMYEYRRHA--PHLLSGGQKQRVAIAGILAM--RPECIIFDEPTAMLDPSGRREVV-NTIKELN 191 (280)
T ss_pred CHHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 45677788886543222 234556554 999999999 999999999999 9999999999 9999987
Q ss_pred h-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 128 S-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 128 ~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
+ .|.+++++. |...+... ++.+++...+.+....+.
T Consensus 192 ~~~g~tillvt----H~~~~~~~-~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 192 KKYGITIILIT----HYMEEAVE-ADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HhcCCEEEEEe----cChHHHhc-CCEEEEEECCEEEEecCH
Confidence 5 488887774 77766554 766666655555544443
No 147
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.9e-24 Score=175.82 Aligned_cols=123 Identities=17% Similarity=0.299 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-CCc------CCHHHhhhHHHHHHHhCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PVA------MDIRELISLEDVMEELGLG 69 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-~~~------~~i~~~i~~~~~l~~~~l~ 69 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| +|+ .++++++.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~----------- 95 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK----------- 95 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----------
Confidence 4789999999999999999999999999999999976532 22333 332 23333321
Q ss_pred CCCchhhhHHhhhhcH--HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccc
Q 026589 70 PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD 146 (236)
Q Consensus 70 ~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d 146 (236)
++++. ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.++|.+++++. |....
T Consensus 96 -----------LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~t----h~~~~ 157 (173)
T cd03230 96 -----------LSGGMKQRLALAQALLH--DPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLSS----HILEE 157 (173)
T ss_pred -----------cCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEC----CCHHH
Confidence 33333 3899999999 999999999999 9999999999 99999876677877664 76665
Q ss_pred hhhHhhhh
Q 026589 147 VTKFISGC 154 (236)
Q Consensus 147 ~~~~~~~~ 154 (236)
...+++.+
T Consensus 158 ~~~~~d~i 165 (173)
T cd03230 158 AERLCDRV 165 (173)
T ss_pred HHHhCCEE
Confidence 55555533
No 148
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=2e-23 Score=173.47 Aligned_cols=130 Identities=10% Similarity=0.067 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
.+++|+||||||||||+++|+|+.+|++|+|+++|.++.. +.+.| ++..++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 107 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVG 107 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHH
Confidence 5789999999999999999999999999999999976532 12222 23456777653
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEE
Q 026589 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (236)
+.++++.++++..... ....++++.+ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++|.++++
T Consensus 108 ~~~~l~~~~l~~~~~~--~~~~LS~G~~~rv~laral~~--~p~~lilDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii 182 (200)
T PRK13540 108 ITELCRLFSLEHLIDY--PCGLLSSGQKRQVALLRLWMS--KAKLWLLDEPLVALDELSLLTII-TKIQEHRAKGGAVLL 182 (200)
T ss_pred HHHHHHHcCCchhhhC--ChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence 4667888888643221 2234555544 999999999 999999999999 9999999999 999988767888877
Q ss_pred EE
Q 026589 136 VY 137 (236)
Q Consensus 136 v~ 137 (236)
+.
T Consensus 183 ~s 184 (200)
T PRK13540 183 TS 184 (200)
T ss_pred Ee
Confidence 74
No 149
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=3.4e-24 Score=185.67 Aligned_cols=151 Identities=15% Similarity=0.038 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-CCCCCCCCCcCCHHHhhh----------------HHHHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS----------------LEDVMEE 65 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~-~~~~~~~~~~~~i~~~i~----------------~~~~l~~ 65 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|... ..+...+.+..++.+++. +.++++.
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 130 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEF 130 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999988521 112222333445555542 2345666
Q ss_pred hCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccc
Q 026589 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (236)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~ 142 (236)
+++++.... ....+++|++ ++||++++. +|+++|+|||++ ||+.++..++ +++.++++.|.+++++. |
T Consensus 131 ~~l~~~~~~--~~~~LS~Gq~qrv~Laral~~--~p~iLlLDEPt~gLD~~~~~~l~-~~L~~~~~~g~tiIiis----H 201 (264)
T PRK13546 131 SELGEFIYQ--PVKKYSSGMRAKLGFSINITV--NPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFVS----H 201 (264)
T ss_pred cCCchhhcC--CcccCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHHHHCCCEEEEEc----C
Confidence 677653221 1234556554 899999999 999999999999 9999999999 88888877788888774 7
Q ss_pred cccchhhHhhhhHHHHHHHH
Q 026589 143 FITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 143 ~~~d~~~~~~~~l~~~~~~i 162 (236)
.......+++.++....+.+
T Consensus 202 ~~~~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 202 NLGQVRQFCTKIAWIEGGKL 221 (264)
T ss_pred CHHHHHHHcCEEEEEECCEE
Confidence 77777777765554444433
No 150
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=2.1e-24 Score=174.06 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------------CCCCC-CCcCC------HHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------------ENFDY-PVAMD------IRE 55 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------------------~~~~~-~~~~~------i~~ 55 (236)
-++.|||.+|||||||+|+|+=+.+|+.|.|.++|..+.- ..+++ +|+++ +-+
T Consensus 33 dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLe 112 (256)
T COG4598 33 DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLE 112 (256)
T ss_pred CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHH
Confidence 3689999999999999999999999999999999865421 01122 33333 333
Q ss_pred hhh-----------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhH
Q 026589 56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (236)
Q Consensus 56 ~i~-----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~ 115 (236)
++- .+..+..+|+..... .|+. .++++++ ++|||+|+. +|++++|||||+ |||...
T Consensus 113 NViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~-~LSGGQQQR~aIARaLam--eP~vmLFDEPTSALDPElV 188 (256)
T COG4598 113 NVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPA-HLSGGQQQRVAIARALAM--EPEVMLFDEPTSALDPELV 188 (256)
T ss_pred HHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCcc-ccCchHHHHHHHHHHHhc--CCceEeecCCcccCCHHHH
Confidence 331 566778889887654 4443 3555543 999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
-+++ +.+++|+++|.|+++|+ |.+.-.....+.++..-.+.+--+.|+
T Consensus 189 gEVL-kv~~~LAeEgrTMv~VT----HEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 189 GEVL-KVMQDLAEEGRTMVVVT----HEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHH-HHHHHHHHhCCeEEEEe----eehhHHHhhhhheEEeecceecccCCh
Confidence 9999 99999999999998886 666555554444444444444433333
No 151
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.7e-24 Score=201.03 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=116.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CC------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~--------- 58 (236)
.+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 32 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (510)
T PRK09700 32 EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKV 111 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccc
Confidence 5789999999999999999999999999999999876531 22333 22 234444331
Q ss_pred --------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 59 --------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
+.++++.+|+....... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ +
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~~LD~~~~~~l~-~ 186 (510)
T PRK09700 112 CGVNIIDWREMRVRAAMMLLRVGLKVDLDEK--VANLSISHKQMLEIAKTLML--DAKVIIMDEPTSSLTNKEVDYLF-L 186 (510)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-H
Confidence 34577788887543222 345667654 999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026589 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
++++++++|.++++++ |.......+++.+++...+.+.
T Consensus 187 ~l~~l~~~g~tiiivs----Hd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 187 IMNQLRKEGTAIVYIS----HKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred HHHHHHhCCCEEEEEe----CCHHHHHHhCCEEEEEECCEEe
Confidence 9999977788888775 8877777777777666555543
No 152
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.5e-24 Score=200.29 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccCCCC--------CCCCC-C------CcCCHHHhh--------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELI-------- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~--~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i-------- 57 (236)
.+++|+||||||||||+|+|+|+++| ++|+|.++|.++.. ..++| + +..++++++
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 111 (506)
T PRK13549 32 EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITP 111 (506)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccc
Confidence 57999999999999999999999996 89999999876521 22333 2 233454432
Q ss_pred -----------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 58 -----------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 58 -----------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
.++++++.+++...... ....+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 186 (506)
T PRK13549 112 GGIMDYDAMYLRAQKLLAQLKLDINPAT--PVGNLGLGQQQLVEIAKALNK--QARLLILDEPTASLTESETAVLL-DII 186 (506)
T ss_pred cCCcCHHHHHHHHHHHHHHcCCCCCccc--chhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHH
Confidence 14567888888654322 2356777765 999999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
++++++|.+++++. |.+.....+++.++....+.+....+
T Consensus 187 ~~l~~~~~tvi~~t----H~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 187 RDLKAHGIACIYIS----HKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHCCCEEEEEe----CcHHHHHHhcCEEEEEECCEEeeecc
Confidence 99977788887775 88888888888777766665544433
No 153
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.5e-24 Score=186.36 Aligned_cols=150 Identities=17% Similarity=0.339 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C------CcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~------~~~~i~~~i~---------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~ 113 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLF 113 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccc
Confidence 4789999999999999999999999999999999976521 12333 1 1234444331
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++.+..... ...++++.+ +.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~L~~ 188 (265)
T PRK10253 114 TRWRKEDEEAVTKAMQATGITHLADQS--VDTLSGGQRQRAWIAMVLAQ--ETAIMLLDEPTTWLDISHQIDLL-ELLSE 188 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCChHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 44567777876422111 234555544 999999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
+.+ .|.++++++ |.......+++.++....+.
T Consensus 189 l~~~~~~tiii~t----H~~~~~~~~~d~i~~l~~G~ 221 (265)
T PRK10253 189 LNREKGYTLAAVL----HDLNQACRYASHLIALREGK 221 (265)
T ss_pred HHHhcCCEEEEEe----CCHHHHHHhCCEEEEEECCE
Confidence 876 478887775 88887778876554444333
No 154
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.91 E-value=1.9e-24 Score=185.14 Aligned_cols=147 Identities=19% Similarity=0.233 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..++| +++ .++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~ 107 (247)
T TIGR00972 28 QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPR 107 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHH
Confidence 579999999999999999999999998 9999999976531 22333 221 45555442
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+|+.+.. ........++++++ ++||++++. +|+++|+||||+ ||+.++..++
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 184 (247)
T TIGR00972 108 LHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAV--EPEVLLLDEPTSALDPIATGKIE- 184 (247)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 34566777886210 01111234555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
++++++++ +.+++++. |...+...+++.+++.
T Consensus 185 ~~l~~~~~-~~tiiivs----H~~~~~~~~~d~i~~l 216 (247)
T TIGR00972 185 ELIQELKK-KYTIVIVT----HNMQQAARISDRTAFF 216 (247)
T ss_pred HHHHHHHh-cCeEEEEe----cCHHHHHHhCCEEEEE
Confidence 99999866 46776664 8877777777544433
No 155
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.91 E-value=4e-24 Score=184.06 Aligned_cols=150 Identities=17% Similarity=0.242 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC------cCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV------AMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~------~~~i~~~i~---------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW 107 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhc
Confidence 5789999999999999999999999999999999976421 12333 22 234555442
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++....... ...++++++ +.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 182 (256)
T TIGR03873 108 AGDSPHDAAVVDRALARTELSHLADRD--MSTLSGGERQRVHVARALAQ--EPKLLLLDEPTNHLDVRAQLETL-ALVRE 182 (256)
T ss_pred cCCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHH
Confidence 34456666775422111 234555544 999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
++++|.+++++. |...+...+++.++....+.
T Consensus 183 ~~~~~~tiii~s----H~~~~~~~~~d~i~~l~~G~ 214 (256)
T TIGR03873 183 LAATGVTVVAAL----HDLNLAASYCDHVVVLDGGR 214 (256)
T ss_pred HHhcCCEEEEEe----CCHHHHHHhCCEEEEEeCCC
Confidence 876788887774 88887777776554444433
No 156
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=2e-24 Score=201.86 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC--------------cCCHHHhh---
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV--------------AMDIRELI--- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~--------------~~~i~~~i--- 57 (236)
-+++|+||||||||||+|+|+|+++|++|+|.+.|.++.. ..++| ++ ..++++++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (490)
T PRK10938 30 DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE 109 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc
Confidence 4789999999999999999999999999999998765421 11333 21 23555543
Q ss_pred -----hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026589 58 -----SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (236)
Q Consensus 58 -----~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (236)
.++++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++
T Consensus 110 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~ 184 (490)
T PRK10938 110 VKDPARCEQLAQQFGITALLDRR--FKYLSTGETRKTLLCQALMS--EPDLLILDEPFDGLDVASRQQLA-ELLASLHQS 184 (490)
T ss_pred hhHHHHHHHHHHHcCCHhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhc
Confidence 256788899997543222 345777655 999999999 999999999999 9999999999 999999777
Q ss_pred CCcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026589 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
|.+++++. |.+.....+|+.++....+.+.
T Consensus 185 g~tvii~t----H~~~~~~~~~d~v~~l~~G~i~ 214 (490)
T PRK10938 185 GITLVLVL----NRFDEIPDFVQFAGVLADCTLA 214 (490)
T ss_pred CCeEEEEe----CCHHHHHhhCCEEEEEECCEEE
Confidence 88887775 8887777777766665555443
No 157
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=5.4e-24 Score=180.77 Aligned_cols=145 Identities=14% Similarity=0.120 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ....++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~ 106 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAE 106 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHH
Confidence 5799999999999999999999999999999999876531 22333 12345555543
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (236)
+.++++.+|+.+..... ...++++.+ ++||++++. +|+++|+|||++ ||+.++..+. +++++++++ |
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~~ 181 (232)
T cd03300 107 IKERVAEALDLVQLEGYANRK--PSQLSGGQQQRVAIARALVN--EPKVLLLDEPLGALDLKLRKDMQ-LELKRLQKELG 181 (232)
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence 34667778887543222 234555544 999999999 999999999999 9999999999 999998764 8
Q ss_pred CcEEEEEecccccccchhhHhhhhHH
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
.+++++. |...+...+++.++.
T Consensus 182 ~tiii~s----h~~~~~~~~~d~i~~ 203 (232)
T cd03300 182 ITFVFVT----HDQEEALTMSDRIAV 203 (232)
T ss_pred CEEEEEe----CCHHHHHHhcCEEEE
Confidence 8887774 777766666654433
No 158
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.8e-24 Score=182.11 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..+.| .+..++.+++.
T Consensus 26 e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~ 105 (235)
T cd03299 26 DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKE 105 (235)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHH
Confidence 5789999999999999999999999999999999976532 12222 22345555443
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (236)
+.++++.+++.+..... ...++++.+ ++||++++. +|+++++||||+ ||+.++..++ ++++++.++ |
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~~ 180 (235)
T cd03299 106 IERKVLEIAEMLGIDHLLNRK--PETLSGGEQQRVAIARALVV--NPKILLLDEPFSALDVRTKEKLR-EELKKIRKEFG 180 (235)
T ss_pred HHHHHHHHHHHcCChhHHhcC--cccCCHHHHHHHHHHHHHHc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 34567788886532221 234555544 999999999 999999999999 9999999999 989988654 8
Q ss_pred CcEEEEEecccccccchhhHhhhh
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
.+++++. |.......+++.+
T Consensus 181 ~tili~t----H~~~~~~~~~d~i 200 (235)
T cd03299 181 VTVLHVT----HDFEEAWALADKV 200 (235)
T ss_pred CEEEEEe----cCHHHHHHhCCEE
Confidence 8887774 7777666666533
No 159
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.2e-24 Score=176.20 Aligned_cols=131 Identities=20% Similarity=0.246 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-CCcCCHHHhhhHHHHHHHhCCCCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PVAMDIRELISLEDVMEELGLGPNG 72 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~ 72 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| +++.......++.+.+.. .
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~---~--- 100 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL---G--- 100 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee---c---
Confidence 5789999999999999999999999999999999876432 12223 222111111112221111 0
Q ss_pred chhhhHHhhhhcH--HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCcEEEEEecccccccchh
Q 026589 73 GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVT 148 (236)
Q Consensus 73 ~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~ 148 (236)
+++++ ++.||++++. +|+++|+|||++ ||+.++..+. +++++++++ +.+++++. |......
T Consensus 101 --------lS~G~~qr~~la~al~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~s----H~~~~~~ 165 (178)
T cd03229 101 --------LSGGQQQRVALARALAM--DPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGITVVLVT----HDLDEAA 165 (178)
T ss_pred --------CCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEe----CCHHHHH
Confidence 33443 3999999999 999999999999 9999999999 999998776 77887774 7666555
Q ss_pred hHhhhh
Q 026589 149 KFISGC 154 (236)
Q Consensus 149 ~~~~~~ 154 (236)
.+++.+
T Consensus 166 ~~~d~i 171 (178)
T cd03229 166 RLADRV 171 (178)
T ss_pred HhcCEE
Confidence 555533
No 160
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.91 E-value=1.7e-24 Score=177.09 Aligned_cols=140 Identities=19% Similarity=0.265 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhh-HHHHHHHhCCCCCCchhhhHHhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~-~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++...... ..+..+. +.++++.+++.+..... ...+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~-----~~~~~i~~~~q~l~~~gl~~~~~~~--~~~L 98 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK-----ELARKIAYVPQALELLGLAHLADRP--FNEL 98 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHH-----HHHHHHhHHHHHHHHcCCHhHhcCC--cccC
Confidence 57899999999999999999999999999999998765321100 1111121 33478888887532211 2345
Q ss_pred hhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCcEEEEEecccccccchhhHhhhhHH
Q 026589 82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 82 ~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++.+ ++||++++. +|+++|+||||+ ||+.++..+. +++++++++ +.+++++. |...+...+++.++.
T Consensus 99 S~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tiii~s----h~~~~~~~~~d~~~~ 170 (180)
T cd03214 99 SGGERQRVLLARALAQ--EPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKTVVMVL----HDLNLAARYADRVIL 170 (180)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEe----CCHHHHHHhCCEEEE
Confidence 55544 999999999 999999999999 9999999999 999998765 77887774 777766666654433
No 161
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.91 E-value=2.4e-24 Score=185.71 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-----CCC-----------CCCCC-CCc--------CCHHHhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-PVA--------MDIRELI 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-----~~~-----------~~~~~-~~~--------~~i~~~i 57 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.+ +.. ..+.| +++ .++.+++
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i 112 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI 112 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH
Confidence 5789999999999999999999999999999999976 421 12344 222 2333322
Q ss_pred -----------------hHHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHH
Q 026589 58 -----------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (236)
Q Consensus 58 -----------------~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~ 116 (236)
.+.++++.+++.+ .... ....+++|++ ++||++++. +|+++|+||||+ ||+.++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LS~Gq~qrl~laral~~--~p~llllDEPt~~LD~~~~~ 188 (258)
T PRK11701 113 GERLMAVGARHYGDIRATAGDWLERVEIDAARIDD--LPTTFSGGMQQRLQIARNLVT--HPRLVFMDEPTGGLDVSVQA 188 (258)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhC--CCccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHH
Confidence 1456778888863 1111 1234555554 999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEecccccccchhhHhhhh
Q 026589 117 PVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 117 ~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
.++ +++++++++ |.+++++. |.......+++.+
T Consensus 189 ~l~-~~l~~~~~~~~~tii~is----H~~~~~~~~~d~i 222 (258)
T PRK11701 189 RLL-DLLRGLVRELGLAVVIVT----HDLAVARLLAHRL 222 (258)
T ss_pred HHH-HHHHHHHHhcCcEEEEEe----CCHHHHHHhcCEE
Confidence 999 889888764 78887774 8877776666533
No 162
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=2.4e-23 Score=173.96 Aligned_cols=130 Identities=22% Similarity=0.233 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----CCCCCC-------CCcCCHHHhhh------------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY-------PVAMDIRELIS------------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~----~~~~~~-------~~~~~i~~~i~------------~ 59 (236)
.+++|+||||||||||+++|+|+.+|++|+|.++|.+.. ...+.| .+..++++++. +
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 108 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDI 108 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHH
Confidence 578999999999999999999999999999999987642 112222 22346666542 5
Q ss_pred HHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026589 60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 60 ~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
.++++.+|+.+.... ....++++++ +.||++++. +|+++|+||||+ ||+.++..++ +++++++++|.+++++
T Consensus 109 ~~~l~~~~l~~~~~~--~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~ 183 (207)
T PRK13539 109 AAALEAVGLAPLAHL--PFGYLSAGQKRRVALARLLVS--NRPIWILDEPTAALDAAAVALFA-ELIRAHLAQGGIVIAA 183 (207)
T ss_pred HHHHHHcCCHHHHcC--ChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 667888888653211 1234555544 999999999 999999999999 9999999999 9999887778888777
Q ss_pred E
Q 026589 137 Y 137 (236)
Q Consensus 137 ~ 137 (236)
.
T Consensus 184 s 184 (207)
T PRK13539 184 T 184 (207)
T ss_pred e
Confidence 4
No 163
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.8e-24 Score=182.82 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC-------CCCCC-------CCcCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~-------~~~~~-------~~~~~i~~~i~----- 58 (236)
.+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| .+..++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 109 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKL 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHh
Confidence 47899999999999999999999974 69999999976531 22333 22345665542
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+. .........++++.+ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~- 186 (250)
T PRK14247 110 NRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF--QPEVLLADEPTANLDPENTAKIE- 186 (250)
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 3455667777531 011111234556544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
++++++++ +.+++++. |.......+++.++....+
T Consensus 187 ~~l~~~~~-~~tiii~s----H~~~~~~~~~d~i~~l~~G 221 (250)
T PRK14247 187 SLFLELKK-DMTIVLVT----HFPQQAARISDYVAFLYKG 221 (250)
T ss_pred HHHHHHhc-CCEEEEEe----CCHHHHHHhcCEEEEEECC
Confidence 88888854 77777664 7777666666644443333
No 164
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.91 E-value=4.9e-24 Score=181.65 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~-------~~~~~i~~~i~------------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~ 106 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAK 106 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHH
Confidence 5789999999999999999999999999999999877532 22333 22335555442
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (236)
+.++++.+++.+..... ...++++++ +.||++++. +|+++|+|||++ ||+.++..+. +++++++++ +
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~ 181 (237)
T TIGR00968 107 IKARVEELLELVQLEGLGDRY--PNQLSGGQRQRVALARALAV--EPQVLLLDEPFGALDAKVRKELR-SWLRKLHDEVH 181 (237)
T ss_pred HHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 35667777776432211 234555543 999999999 999999999999 9999999999 899988765 7
Q ss_pred CcEEEEEecccccccchhhHhhhhHH
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
.+++++. |...+..++++.++.
T Consensus 182 ~tvli~s----H~~~~~~~~~d~i~~ 203 (237)
T TIGR00968 182 VTTVFVT----HDQEEAMEVADRIVV 203 (237)
T ss_pred CEEEEEe----CCHHHHHhhcCEEEE
Confidence 8887774 877766777764433
No 165
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.8e-24 Score=200.96 Aligned_cols=150 Identities=13% Similarity=0.156 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CC---------cCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~i~------ 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 290 e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 369 (510)
T PRK09700 290 EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLK 369 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccc
Confidence 5789999999999999999999999999999999876421 12333 22 234544421
Q ss_pred -------------------HHHHHHHhCCC-CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhH
Q 026589 59 -------------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (236)
Q Consensus 59 -------------------~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~ 115 (236)
+.++++.+++. ...... ...+++|++ +.||++++. +|++|||||||+ ||+.++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~ 445 (510)
T PRK09700 370 DGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN--ITELSGGNQQKVLISKWLCC--CPEVIIFDEPTRGIDVGAK 445 (510)
T ss_pred cccccccccccChHHHHHHHHHHHHhcCCCCCCccCc--cccCChHHHHHHHHHHHHhc--CCCEEEECCCCCCcCHHHH
Confidence 34677888885 322221 245667654 999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
..++ +++++++++|.++++++ |.......+|+.++....+.
T Consensus 446 ~~l~-~~l~~l~~~g~tvi~vs----Hd~~~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 446 AEIY-KVMRQLADDGKVILMVS----SELPEIITVCDRIAVFCEGR 486 (510)
T ss_pred HHHH-HHHHHHHHCCCEEEEEc----CCHHHHHhhCCEEEEEECCE
Confidence 9999 99999877788887774 88887778876555444333
No 166
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.7e-24 Score=185.68 Aligned_cols=148 Identities=11% Similarity=0.139 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~--------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++| ++ ..++++++.
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~ 115 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVP 115 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCC
Confidence 5789999999999999999999999999999999977532 22333 22 123333321
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
+.++++.+++.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~ 190 (269)
T PRK13648 116 YDEMHRRVSEALKQVDMLERADYE--PNALSGGQKQRVAIAGVLAL--NPSVIILDEATSMLDPDARQNLL-DLVRKVKS 190 (269)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 45678888887543222 234555544 999999999 999999999999 9999999999 88998875
Q ss_pred C-CCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 129 ~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
+ |.++++++ |...+... ++.+++...+
T Consensus 191 ~~~~tiiivt----H~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 191 EHNITIISIT----HDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred hcCCEEEEEe----cCchHHhc-CCEEEEEECC
Confidence 4 78887774 76655443 5444433333
No 167
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=3.3e-23 Score=171.48 Aligned_cols=130 Identities=13% Similarity=0.050 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---CCCCC-------CCcCCHHHhhh-----------HHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS-----------LED 61 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---~~~~~-------~~~~~i~~~i~-----------~~~ 61 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....| ....++++++. +.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 106 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYA 106 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHH
Confidence 5789999999999999999999999999999999976532 11222 23456777653 355
Q ss_pred HHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 62 ~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
+++.+++.+..... ...++++.+ +.+|++++. +|+++|+||||+ ||+.++..+. +++++..+.+.+++++.
T Consensus 107 ~l~~~~l~~~~~~~--~~~LS~G~~~rl~la~al~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~s 180 (195)
T PRK13541 107 AIHYFKLHDLLDEK--CYSLSSGMQKIVAIARLIAC--QSDLWLLDEVETNLSKENRDLLN-NLIVMKANSGGIVLLSS 180 (195)
T ss_pred HHHHcCCHhhhccC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 66777876432211 234555544 999999999 999999999999 9999999998 88877656678887774
No 168
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.90 E-value=4.1e-24 Score=183.55 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-----CCC-----------CCCCC-CC--------cCCHHHhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-PV--------AMDIRELI 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-----~~~-----------~~~~~-~~--------~~~i~~~i 57 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.+ +.. ..+.| ++ ..++.+++
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i 109 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANI 109 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHH
Confidence 5789999999999999999999999999999999865 311 12333 22 12333222
Q ss_pred -----------------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHH
Q 026589 58 -----------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (236)
Q Consensus 58 -----------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~ 117 (236)
.+.++++.+++.+.. .......++++++ ++||++++. +|+++|+||||+ ||+.++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~LSgG~~qrv~laral~~--~p~vlllDEP~~~LD~~~~~~ 186 (253)
T TIGR02323 110 GERLMAIGARHYGNIRAAAHDWLEEVEIDPTR-IDDLPRAFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQAR 186 (253)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHcCCChhh-hhcCchhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHH
Confidence 145667888885311 1111234666554 999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhh
Q 026589 118 VLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 118 ~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
+. ++++++.+ .|.++++++ |.......+++.+
T Consensus 187 l~-~~l~~~~~~~~~tii~vs----H~~~~~~~~~d~~ 219 (253)
T TIGR02323 187 LL-DLLRGLVRDLGLAVIIVT----HDLGVARLLAQRL 219 (253)
T ss_pred HH-HHHHHHHHhcCCEEEEEe----CCHHHHHHhcCEE
Confidence 99 88888765 488888775 7776666666533
No 169
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.5e-24 Score=187.15 Aligned_cols=150 Identities=15% Similarity=0.248 Sum_probs=109.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC-CCc--------CCHHHhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PVA--------MDIRELI------------ 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----~~~~~-~~~--------~~i~~~i------------ 57 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| +++ .++++++
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 113 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR 113 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccccc
Confidence 5789999999999999999999999999999999876421 11223 111 1222221
Q ss_pred --------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 58 --------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
.+.++++.+++.+..... ...++++.+ +.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 114 ~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~ 188 (272)
T PRK15056 114 RAKKRDRQIVTAALARVDMVEFRHRQ--IGELSGGQKKRVFLARAIAQ--QGQVILLDEPFTGVDVKTEARII-SLLREL 188 (272)
T ss_pred CCCHHHHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHH
Confidence 145677888886532221 234666554 999999999 999999999999 9999999999 999998
Q ss_pred HhCCCcEEEEEecccccccchhhHhhhhHHHHHHHH
Q 026589 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
+++|.+++++. |.......+++.+++. .+.+
T Consensus 189 ~~~g~tviivs----H~~~~~~~~~d~v~~~-~G~i 219 (272)
T PRK15056 189 RDEGKTMLVST----HNLGSVTEFCDYTVMV-KGTV 219 (272)
T ss_pred HhCCCEEEEEe----CCHHHHHHhCCEEEEE-CCEE
Confidence 76788887774 8777777777655433 3443
No 170
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.1e-24 Score=184.32 Aligned_cols=146 Identities=17% Similarity=0.218 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
.+++|+||||||||||+++|+|++. |++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 112 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLR 112 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHH
Confidence 5789999999999999999999874 589999999976531 22344 221 25665543
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
++++++.+++.+.. ........++++++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 189 (253)
T PRK14242 113 VNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV--EPEVLLMDEPASALDPIATQKIE- 189 (253)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 23345566664310 00011134555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++++ +.+++++. |.......+++.++.
T Consensus 190 ~~l~~~~~-~~tvii~t----H~~~~~~~~~d~v~~ 220 (253)
T PRK14242 190 ELIHELKA-RYTIIIVT----HNMQQAARVSDVTAF 220 (253)
T ss_pred HHHHHHhc-CCeEEEEE----ecHHHHHHhCCEEEE
Confidence 99999854 67887774 777766676654333
No 171
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.90 E-value=8.3e-24 Score=178.85 Aligned_cols=145 Identities=21% Similarity=0.320 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC---CCCceEEEeccCCCC----CCCCC-------CCcCCHHHhhhH---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL--------- 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~---~~~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~~--------- 59 (236)
.+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| .+..++++++..
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~ 113 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRK 113 (226)
T ss_pred eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccc
Confidence 5789999999999999999999999 999999999977531 22222 233466666541
Q ss_pred ----------HH-HHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 60 ----------ED-VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 60 ----------~~-~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
++ .++.+++.+..... ...++++.+ ++||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~illlDEP~~gLD~~~~~~~~-~~l~~ 188 (226)
T cd03234 114 SSDAIRKKRVEDVLLRDLALTRIGGNL--VKGISGGERRRVSIAVQLLW--DPKVLILDEPTSGLDSFTALNLV-STLSQ 188 (226)
T ss_pred cchHHHHHHHHHHHHHhhcchhhhccc--ccCcCHHHHHHHHHHHHHHh--CCCEEEEeCCCcCCCHHHHHHHH-HHHHH
Confidence 12 34444554322111 123444443 999999999 999999999999 9999999999 89999
Q ss_pred HHhCCCcEEEEEecccccc-cchhhHhhhhHH
Q 026589 126 LKSRNFNVCAVYLLDSQFI-TDVTKFISGCMA 156 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~-~d~~~~~~~~l~ 156 (236)
+++++.+++++. |.. .+...+++.+++
T Consensus 189 ~~~~~~tiii~s----h~~~~~~~~~~d~i~~ 216 (226)
T cd03234 189 LARRNRIVILTI----HQPRSDLFRLFDRILL 216 (226)
T ss_pred HHHCCCEEEEEe----cCCCHHHHHhCCEEEE
Confidence 876688887774 776 356666654433
No 172
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.3e-24 Score=197.78 Aligned_cols=151 Identities=11% Similarity=0.145 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CC------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~--------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (491)
T PRK10982 25 SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGM 104 (491)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccc
Confidence 4789999999999999999999999999999999976521 22333 22 235554432
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
++++++.+++....... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 179 (491)
T PRK10982 105 FVDQDKMYRDTKAIFDELDIDIDPRAK--VATLSVSQMQMIEIAKAFSY--NAKIVIMDEPTSSLTEKEVNHLF-TIIRK 179 (491)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 45677778886432222 345777654 999999999 999999999999 9999999999 89999
Q ss_pred HHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHH
Q 026589 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
+++.|.++++++ |...+...+|+.+++...+.+
T Consensus 180 l~~~g~tvii~t----H~~~~~~~~~d~i~~l~~G~i 212 (491)
T PRK10982 180 LKERGCGIVYIS----HKMEEIFQLCDEITILRDGQW 212 (491)
T ss_pred HHhCCCEEEEEe----cCHHHHHHhCCEEEEEECCEE
Confidence 877788887775 777777777776655544443
No 173
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.8e-24 Score=186.71 Aligned_cols=149 Identities=12% Similarity=0.154 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~--------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~ 115 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP 115 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCC
Confidence 5789999999999999999999999999999999977532 22333 21 246666553
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
+.++++.+++.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~ 190 (271)
T PRK13632 116 PKKMKDIIDDLAKKVGMEDYLDKE--PQNLSGGQKQRVAIASVLAL--NPEIIIFDESTSMLDPKGKREIK-KIMVDLRK 190 (271)
T ss_pred HHHHHHHHHHHHHHcCCHHHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34567777886432221 234555544 999999999 999999999999 9999999999 99999876
Q ss_pred C-CCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 129 ~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
+ +.+++++. |...... +++.+++...+.
T Consensus 191 ~~~~tiii~s----H~~~~~~-~~d~v~~l~~G~ 219 (271)
T PRK13632 191 TRKKTLISIT----HDMDEAI-LADKVIVFSEGK 219 (271)
T ss_pred hcCcEEEEEE----echhHHh-hCCEEEEEECCE
Confidence 5 47887764 6665443 455444443333
No 174
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.90 E-value=8.5e-24 Score=171.98 Aligned_cols=119 Identities=21% Similarity=0.241 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCcC-----CHHHhhhHHHHHHHhCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELISLEDVMEELGLG 69 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~i~~~~~l~~~~l~ 69 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| +++. ++++++
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l------------ 96 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------ 96 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC------------
Confidence 4689999999999999999999999999999999976532 22333 2221 233322
Q ss_pred CCCchhhhHHhhhhcH--HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccc
Q 026589 70 PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD 146 (236)
Q Consensus 70 ~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d 146 (236)
++++. ++.||++++. +|+++|+||||+ ||+.++..+. +++++++++|.+++++. |....
T Consensus 97 -----------LS~G~~qrv~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~s----h~~~~ 158 (173)
T cd03246 97 -----------LSGGQRQRLGLARALYG--NPRILVLDEPNSHLDVEGERALN-QAIAALKAAGATRIVIA----HRPET 158 (173)
T ss_pred -----------cCHHHHHHHHHHHHHhc--CCCEEEEECCccccCHHHHHHHH-HHHHHHHhCCCEEEEEe----CCHHH
Confidence 33333 3999999999 999999999999 9999999999 89999876788887774 66543
Q ss_pred hhhHhh
Q 026589 147 VTKFIS 152 (236)
Q Consensus 147 ~~~~~~ 152 (236)
. .+++
T Consensus 159 ~-~~~d 163 (173)
T cd03246 159 L-ASAD 163 (173)
T ss_pred H-HhCC
Confidence 3 3444
No 175
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=4.4e-24 Score=181.62 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=121.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCC------CCC--CC------cCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN------FDY--PV------AMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~------~~~--~~------~~~i~~~i~---------- 58 (236)
.+++++|||||||||++|+++|++.|++|.|.++|.+|..+. +++ .+ +..+.+.+.
T Consensus 51 ~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd 130 (325)
T COG4586 51 EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPD 130 (325)
T ss_pred cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCH
Confidence 579999999999999999999999999999999999996421 111 11 111222222
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHhhhhcH--HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-
Q 026589 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS- 128 (236)
Q Consensus 59 ------~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~- 128 (236)
.+...+.+++++.. ..++..++-|. ++.||.+|++ +|++|+|||||- ||..++..+. +++++..+
T Consensus 131 ~~F~~r~~~l~eiLdl~~~l--k~~vr~LSlGqRmraeLaaaLLh--~p~VLfLDEpTvgLDV~aq~~ir-~Flke~n~~ 205 (325)
T COG4586 131 DEFAERLDFLTEILDLEGFL--KWPVRKLSLGQRMRAELAAALLH--PPKVLFLDEPTVGLDVNAQANIR-EFLKEYNEE 205 (325)
T ss_pred HHHHHHHHHHHHHhcchhhh--hhhhhhccchHHHHHHHHHHhcC--CCcEEEecCCccCcchhHHHHHH-HHHHHHHHh
Confidence 44455556776542 22344555554 4899999999 999999999998 9999999998 99999886
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
.+.||+.+ +|.+.|...+|.++++...|++.++.+.
T Consensus 206 ~~aTVllT----TH~~~di~~lc~rv~~I~~Gqlv~dg~l 241 (325)
T COG4586 206 RQATVLLT----THIFDDIATLCDRVLLIDQGQLVFDGTL 241 (325)
T ss_pred hCceEEEE----ecchhhHHHhhhheEEeeCCcEeecccH
Confidence 57888655 5999999999999999999998887554
No 176
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.9e-24 Score=186.90 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=117.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCC---ceEEEeccCCCC-------CCCCC-CC-------cCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~---G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~------ 58 (236)
.+++|+||||||||||+++|+|+++|++ |+|.++|.++.. ..++| ++ ..++++++.
T Consensus 34 e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~ 113 (282)
T PRK13640 34 SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR 113 (282)
T ss_pred CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC
Confidence 5789999999999999999999999987 899999987632 22333 21 336666553
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~G~~qrv~laral~~--~P~llllDEPt~gLD~~~~~~l~-~~l~~ 188 (282)
T PRK13640 114 AVPRPEMIKIVRDVLADVGMLDYIDSE--PANLSGGQKQRVAIAGILAV--EPKIIILDESTSMLDPAGKEQIL-KLIRK 188 (282)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence 34567788887542222 234555544 999999999 999999999999 9999999999 89999
Q ss_pred HHhC-CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeec
Q 026589 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (236)
Q Consensus 126 l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vl 172 (236)
++++ |.+|+++. |.+... .+++.+++...+.+....+.-.++
T Consensus 189 l~~~~g~tvli~t----H~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 189 LKKKNNLTVISIT----HDIDEA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHhcCCEEEEEe----cCHHHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 8764 88887774 777655 357766666555555544443333
No 177
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7e-24 Score=188.87 Aligned_cols=158 Identities=13% Similarity=0.165 Sum_probs=117.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC----CCCceEEEeccCCCC-----------CCCCC-CC--------cCCHHHhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELIS 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~----~~~G~i~i~~~d~~~-----------~~~~~-~~--------~~~i~~~i~ 58 (236)
-+++|+||||||||||+++|+|+++ +++|+|.++|.++.. ..++| +| ..++.+.+.
T Consensus 34 e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~ 113 (326)
T PRK11022 34 EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIM 113 (326)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHH
Confidence 4799999999999999999999997 489999999987632 12333 22 234433221
Q ss_pred -----------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHH
Q 026589 59 -----------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (236)
Q Consensus 59 -----------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~ 116 (236)
+.++++.+||.+.. ...+. ..+++|++ ++||++++. +|++||+||||+ ||+.++.
T Consensus 114 ~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p-~~LSgGq~QRv~iArAL~~--~P~llilDEPts~LD~~~~~ 190 (326)
T PRK11022 114 EAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYP-HQLSGGMSQRVMIAMAIAC--RPKLLIADEPTTALDVTIQA 190 (326)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCc-hhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHH
Confidence 56778889987421 11122 35666654 999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 117 ~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
.++ ++++++++ .|.++++++ |++.....+++.++++..+.+....+.
T Consensus 191 ~il-~lL~~l~~~~g~til~iT----Hdl~~~~~~adri~vm~~G~ive~g~~ 238 (326)
T PRK11022 191 QII-ELLLELQQKENMALVLIT----HDLALVAEAAHKIIVMYAGQVVETGKA 238 (326)
T ss_pred HHH-HHHHHHHHhcCCEEEEEe----CCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999 99999976 588888875 888877788876666655555444333
No 178
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.90 E-value=9.1e-24 Score=181.74 Aligned_cols=145 Identities=14% Similarity=0.215 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC----CCceEEEeccCCCC-----CCCCC-CC--------cCCHHHhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY-PV--------AMDIRELI------- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~----~~G~i~i~~~d~~~-----~~~~~-~~--------~~~i~~~i------- 57 (236)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| ++ ..++.+++
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 109 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL 109 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc
Confidence 47899999999999999999999999 99999999876521 12333 11 22332221
Q ss_pred -------hHHHHHHHhCCCCCCc-hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 58 -------SLEDVMEELGLGPNGG-LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 58 -------~~~~~l~~~~l~~~~~-~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
.+.++++.+++.+... .......++++.+ +.||++++. +|+++||||||+ ||+.++..+. ++++++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~ 186 (254)
T PRK10418 110 GKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC--EAPFIIADEPTTDLDVVAQARIL-DLLESI 186 (254)
T ss_pred CCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHH
Confidence 1566788888875210 0111234555544 999999999 999999999999 9999999999 999988
Q ss_pred Hh-CCCcEEEEEecccccccchhhHhhhh
Q 026589 127 KS-RNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++ .|.+++++. |...+...+++.+
T Consensus 187 ~~~~g~til~~s----H~~~~~~~~~d~v 211 (254)
T PRK10418 187 VQKRALGMLLVT----HDMGVVARLADDV 211 (254)
T ss_pred HHhcCcEEEEEe----cCHHHHHHhCCEE
Confidence 65 478887774 8877776776533
No 179
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.6e-24 Score=205.50 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=115.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-CC--------cCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV--------AMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~~--------~~~i~~~i~----- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++| +| ..++.+++.
T Consensus 351 e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~ 430 (623)
T PRK10261 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV 430 (623)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999976521 12333 22 345555432
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 ------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
+.++++.+|+.+.....+ ...+++|++ ++||++++. +|++||+||||+ ||+.++..++ +++
T Consensus 431 ~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-~~~LSgGqrQRv~iAraL~~--~p~llllDEPts~LD~~~~~~i~-~ll 506 (623)
T PRK10261 431 HGLLPGKAAAARVAWLLERVGLLPEHAWRY-PHEFSGGQRQRICIARALAL--NPKVIIADEAVSALDVSIRGQII-NLL 506 (623)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 456788888863211112 245666654 999999999 999999999999 9999999999 999
Q ss_pred HHHHhC-CCcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026589 124 DHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 124 ~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
++++++ |.++++++ |++.....+++.++++..+.+.
T Consensus 507 ~~l~~~~g~tvi~is----Hdl~~v~~~~dri~vl~~G~iv 543 (623)
T PRK10261 507 LDLQRDFGIAYLFIS----HDMAVVERISHRVAVMYLGQIV 543 (623)
T ss_pred HHHHHhcCCEEEEEe----CCHHHHHHhCCEEEEEECCEEE
Confidence 999764 88888875 8888888888766555555443
No 180
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=6.4e-24 Score=183.87 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------CCCCCCCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------------------~~~~~~~~~~i~~~i~------ 58 (236)
.+..|+|-+|||||||+|++++++.|+.|+|.++|.|+.. ++++..|+.+|.+++.
T Consensus 55 eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~ 134 (386)
T COG4175 55 EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 134 (386)
T ss_pred eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec
Confidence 5788999999999999999999999999999999998853 4556667777877765
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+||...... |+ +.++++++ +-|||||+. +|++|++|||++ |||-.+.++- +-+.+
T Consensus 135 Gv~~~er~~~a~~~l~~VgL~~~~~~-yp-~eLSGGMqQRVGLARAla~--~~~IlLMDEaFSALDPLIR~~mQ-deLl~ 209 (386)
T COG4175 135 GVPKAEREERALEALELVGLEGYADK-YP-NELSGGMQQRVGLARALAN--DPDILLMDEAFSALDPLIRTEMQ-DELLE 209 (386)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhc-Cc-ccccchHHHHHHHHHHHcc--CCCEEEecCchhhcChHHHHHHH-HHHHH
Confidence 7889999999876433 23 46777765 999999999 999999999999 9999999988 55555
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHH
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
|++ .++||++|+ |++.+.-++-+++-++..|.+
T Consensus 210 Lq~~l~KTIvFit----HDLdEAlriG~rIaimkdG~i 243 (386)
T COG4175 210 LQAKLKKTIVFIT----HDLDEALRIGDRIAIMKDGEI 243 (386)
T ss_pred HHHHhCCeEEEEe----cCHHHHHhccceEEEecCCeE
Confidence 654 689999885 898888887765555554444
No 181
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.6e-24 Score=183.43 Aligned_cols=146 Identities=17% Similarity=0.224 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC---------CCCCCC-CC-----cCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~---------~~~~~~-~~-----~~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++. ...++| +| ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 113 (254)
T PRK14273 34 SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPK 113 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHH
Confidence 47899999999999999999999987 4899999987642 122344 22 245665543
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+. .........++++++ ++||++++. +|+++||||||+ ||+.++..++
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 190 (254)
T PRK14273 114 IHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI--EPNVILMDEPTSALDPISTGKIE- 190 (254)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-
Confidence 2334555555311 001111234555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++++ +.+++++. |.......++++++.
T Consensus 191 ~~l~~~~~-~~tvii~s----H~~~~~~~~~d~i~~ 221 (254)
T PRK14273 191 ELIINLKE-SYTIIIVT----HNMQQAGRISDRTAF 221 (254)
T ss_pred HHHHHHhc-CCEEEEEe----CCHHHHHHhCCEEEE
Confidence 99999854 67777664 877766666654433
No 182
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.90 E-value=5.6e-24 Score=189.78 Aligned_cols=153 Identities=13% Similarity=0.163 Sum_probs=113.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCCC-----------CCCCC-CC--------cCCHHHhhh-
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELIS- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~---~G~i~i~~~d~~~-----------~~~~~-~~--------~~~i~~~i~- 58 (236)
.+++|+|+||||||||+++|+|+++|. +|+|.++|.++.. ..++| +| ..++.+++.
T Consensus 43 e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 122 (330)
T PRK09473 43 ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLME 122 (330)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHH
Confidence 579999999999999999999999986 9999999987632 13333 22 234444321
Q ss_pred ----------------HHHHHHHhCCCCCCc--hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHH
Q 026589 59 ----------------LEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (236)
Q Consensus 59 ----------------~~~~l~~~~l~~~~~--~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~ 117 (236)
+.++++.+++.+... ..+. ..+++|++ ++||++++. +|+++|+||||+ ||+.++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p-~~LSgG~~QRv~IArAL~~--~P~llilDEPts~LD~~~~~~ 199 (330)
T PRK09473 123 VLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYP-HEFSGGMRQRVMIAMALLC--RPKLLIADEPTTALDVTVQAQ 199 (330)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCc-ccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHH
Confidence 456778888864211 1122 34666654 999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhC-CCcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026589 118 VLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 118 ~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
++ +++++++++ |.++++++ |++.....+++.++++..|.+.
T Consensus 200 i~-~lL~~l~~~~g~til~iT----Hdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 200 IM-TLLNELKREFNTAIIMIT----HDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred HH-HHHHHHHHHcCCEEEEEE----CCHHHHHHhCCEEEEEECCEEE
Confidence 99 999999764 88888885 8887777777655444444443
No 183
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.90 E-value=4.1e-24 Score=181.79 Aligned_cols=137 Identities=16% Similarity=0.121 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++. +
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~ 108 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERV 108 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHH
Confidence 4789999999999999999999999999999999976521 12333 22 235555543 1
Q ss_pred HHHHHHhCCCCC---------CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGPN---------GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~~---------~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.+.++..++... .........++++++ ++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 109 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 185 (237)
T cd03252 109 IEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH--NPRILIFDEATSALDYESEHAIM-RNMHDIC 185 (237)
T ss_pred HHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence 112222222110 000011234555544 999999999 999999999999 9999999999 8888886
Q ss_pred hCCCcEEEEEecccccccch
Q 026589 128 SRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~ 147 (236)
+ |.+++++. |.....
T Consensus 186 ~-~~tiii~s----H~~~~~ 200 (237)
T cd03252 186 A-GRTVIIIA----HRLSTV 200 (237)
T ss_pred C-CCEEEEEe----CCHHHH
Confidence 4 78877664 666543
No 184
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.90 E-value=2e-23 Score=172.95 Aligned_cols=132 Identities=18% Similarity=0.261 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCCC----CCCCC-C------CcCCHHHhhhHHHHHHHhCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA----ENFDY-P------VAMDIRELISLEDVMEELGLG 69 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l--~~~~G~i~i~~~d~~~----~~~~~-~------~~~~i~~~i~~~~~l~~~~l~ 69 (236)
.+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..+.| + +..++++++..... +.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~---~~-- 110 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK---LR-- 110 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH---hc--
Confidence 478999999999999999999999 9999999999987632 22333 2 23456655432111 10
Q ss_pred CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEeccccccc-
Q 026589 70 PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT- 145 (236)
Q Consensus 70 ~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~- 145 (236)
.++++.+ +.||++++. +|+++|+|||++ ||+.++..+. ++++++++++.+++++. |...
T Consensus 111 ----------~LS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~s----h~~~~ 173 (194)
T cd03213 111 ----------GLSGGERKRVSIALELVS--NPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRTIICSI----HQPSS 173 (194)
T ss_pred ----------cCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEEe----cCchH
Confidence 2444443 999999999 999999999999 9999999999 99999876788887774 7664
Q ss_pred chhhHhhhhHH
Q 026589 146 DVTKFISGCMA 156 (236)
Q Consensus 146 d~~~~~~~~l~ 156 (236)
+...+++.++.
T Consensus 174 ~~~~~~d~v~~ 184 (194)
T cd03213 174 EIFELFDKLLL 184 (194)
T ss_pred HHHHhcCEEEE
Confidence 45556654443
No 185
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.90 E-value=2e-23 Score=175.84 Aligned_cols=140 Identities=16% Similarity=0.222 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-C------CcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-P------VAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~------~~~~i~~~i~------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + +..++.+++.
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~ 111 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP 111 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc
Confidence 5799999999999999999999999999999999876521 12333 2 2234443321
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++++..... ...++++++ ++||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~ 186 (220)
T TIGR02982 112 NLSYQEARERARAMLEAVGLGDHLDYY--PHNLSGGQKQRVAIARALVH--RPKLVLADEPTAALDSKSGRDVV-ELMQK 186 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHH
Confidence 56778888886543222 234555544 999999999 999999999999 9999999999 99998
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhh
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~ 152 (236)
+.+ .+.+++++. |... ...+++
T Consensus 187 ~~~~~~~tii~~s----h~~~-~~~~~d 209 (220)
T TIGR02982 187 LAREQGCTILIVT----HDNR-ILDVAD 209 (220)
T ss_pred HHHHcCCEEEEEe----CCHH-HHhhCC
Confidence 875 578887774 6654 334554
No 186
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.7e-23 Score=196.18 Aligned_cols=151 Identities=14% Similarity=0.153 Sum_probs=115.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-C------CcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~------~~~~i~~~i~--------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| + +..++.+++.
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 110 (501)
T PRK11288 31 QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG 110 (501)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccC
Confidence 4789999999999999999999999999999999876531 22333 2 2345544432
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..+. +++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 185 (501)
T PRK11288 111 IVNRRLLNYEAREQLEHLGVDIDPDTP--LKYLSIGQRQMVEIAKALAR--NARVIAFDEPTSSLSAREIEQLF-RVIRE 185 (501)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCcCCc--hhhCCHHHHHHHHHHHHHHh--CCCEEEEcCCCCCCCHHHHHHHH-HHHHH
Confidence 45678888886533222 345777654 999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHH
Q 026589 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
++++|.+++++. |.......+++.++....+.+
T Consensus 186 ~~~~g~tiiiit----Hd~~~~~~~~d~i~~l~~G~i 218 (501)
T PRK11288 186 LRAEGRVILYVS----HRMEEIFALCDAITVFKDGRY 218 (501)
T ss_pred HHhCCCEEEEEe----CCHHHHHHhCCEEEEEECCEE
Confidence 877788888775 777777777776665555444
No 187
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.90 E-value=1e-23 Score=183.48 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC--------CceEEEeccCCCC-------CCCCC-C------CcCCHHHhhh--
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--------RRTMHIVNLDPAA-------ENFDY-P------VAMDIRELIS-- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~--------~G~i~i~~~d~~~-------~~~~~-~------~~~~i~~~i~-- 58 (236)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..+.| + ...++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 107 (272)
T PRK13547 28 RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG 107 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence 478999999999999999999999998 9999999976531 11222 1 1235555442
Q ss_pred ------------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHh---------cCCCCCEEEEeCCCc
Q 026589 59 ------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ 109 (236)
Q Consensus 59 ------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~---------~~~~p~~lllDEPt~ 109 (236)
+.++++.+++.+..... ...++++.+ ++||++++ . +|+++|+||||+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~~~~~~~~~~--~p~lllLDEPt~ 183 (272)
T PRK13547 108 RYPHARRAGALTHRDGEIAWQALALAGATALVGRD--VTTLSGGELARVQFARVLAQLWPPHDAAQ--PPRYLLLDEPTA 183 (272)
T ss_pred ccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhccccccccCC--CCCEEEEcCccc
Confidence 34566677776432211 234555544 99999999 6 899999999999
Q ss_pred -ccHHhHHHHHHHHHHHHHhC-CCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 110 -IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 110 -LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
||+.++..+. +++++++++ |.+++++. |...+...+++.+++...+.
T Consensus 184 ~LD~~~~~~l~-~~l~~~~~~~~~tviiis----H~~~~~~~~~d~i~~l~~G~ 232 (272)
T PRK13547 184 ALDLAHQHRLL-DTVRRLARDWNLGVLAIV----HDPNLAARHADRIAMLADGA 232 (272)
T ss_pred cCCHHHHHHHH-HHHHHHHHhcCCEEEEEE----CCHHHHHHhCCEEEEEECCe
Confidence 9999999999 999998765 88887774 88777777776444443333
No 188
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=8.9e-24 Score=198.29 Aligned_cols=150 Identities=14% Similarity=0.227 Sum_probs=112.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-CCCceEEEeccCCCC--------CCCCC-CC---------cCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-~~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~i~----- 58 (236)
-+++|+||||||||||+|+|+|+++ |++|+|.++|.++.. ..++| +| ..++.+++.
T Consensus 289 e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~ 368 (506)
T PRK13549 289 EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALD 368 (506)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhh
Confidence 4789999999999999999999999 599999999876421 12333 22 234444331
Q ss_pred ----------------HHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 59 ----------------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
+.++++.+++.+ .... ....+++|++ ++||++++. +|++|||||||+ ||+.++..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LSgG~kqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l 444 (506)
T PRK13549 369 RFTGGSRIDDAAELKTILESIQRLKVKTASPEL--AIARLSGGNQQKAVLAKCLLL--NPKILILDEPTRGIDVGAKYEI 444 (506)
T ss_pred hhccCcccChHHHHHHHHHHHHhcCccCCCccc--ccccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence 456778888853 3222 1345667654 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
+ +++++++++|.+|+++ +|.+.....+|+.++....+.
T Consensus 445 ~-~~l~~l~~~g~tvi~~----sHd~~~~~~~~d~v~~l~~G~ 482 (506)
T PRK13549 445 Y-KLINQLVQQGVAIIVI----SSELPEVLGLSDRVLVMHEGK 482 (506)
T ss_pred H-HHHHHHHHCCCEEEEE----CCCHHHHHHhCCEEEEEECCE
Confidence 9 9999998778888777 488888888876554443333
No 189
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=1.1e-23 Score=197.94 Aligned_cols=147 Identities=13% Similarity=0.209 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CC---------cCCHHHhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELI------- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~i------- 57 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++.+++
T Consensus 290 e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~ 369 (510)
T PRK15439 290 EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR 369 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence 5789999999999999999999999999999999875421 22344 22 13443332
Q ss_pred ------------hHHHHHHHhCCC-CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 58 ------------SLEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 58 ------------~~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
.++++++.+++. ...... ...+++|++ ++||++++. +|++|||||||+ ||+.++..+. +
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~kqrl~la~al~~--~p~lLlLDEPt~gLD~~~~~~l~-~ 444 (510)
T PRK15439 370 RGFWIKPARENAVLERYRRALNIKFNHAEQA--ARTLSGGNQQKVLIAKCLEA--SPQLLIVDEPTRGVDVSARNDIY-Q 444 (510)
T ss_pred hccccChHHHHHHHHHHHHHcCCCCCCccCc--cccCCcHHHHHHHHHHHHhh--CCCEEEECCCCcCcChhHHHHHH-H
Confidence 145678888886 332222 245666654 999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHH
Q 026589 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (236)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~ 158 (236)
++++++++|.++|++. |++.....+|+.+++..
T Consensus 445 ~l~~l~~~g~tiIivs----Hd~~~i~~~~d~i~~l~ 477 (510)
T PRK15439 445 LIRSIAAQNVAVLFIS----SDLEEIEQMADRVLVMH 477 (510)
T ss_pred HHHHHHhCCCEEEEEC----CCHHHHHHhCCEEEEEE
Confidence 9999987788887774 88887778776544433
No 190
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=6e-24 Score=180.34 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~ 108 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEV 108 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHH
Confidence 4789999999999999999999999999999999876421 12333 22 235666553
Q ss_pred --------HHHHHHHh--CCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 --------LEDVMEEL--GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 --------~~~~l~~~--~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+ ++...... ....++++.+ +.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 109 ~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~ 183 (234)
T cd03251 109 EEAARAANAHEFIMELPEGYDTVIGE--RGVKLSGGQRQRIAIARALLK--DPPILILDEATSALDTESERLVQ-AALER 183 (234)
T ss_pred HHHHHHcCcHHHHHhcccCcceeecc--CCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 12222222 22221111 1123555543 999999999 999999999999 9999999999 99998
Q ss_pred HHhCCCcEEEEEecccccccchhhHhh
Q 026589 126 LKSRNFNVCAVYLLDSQFITDVTKFIS 152 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~~ 152 (236)
+.+ +.+++++. |...+... ++
T Consensus 184 ~~~-~~tii~~s----h~~~~~~~-~d 204 (234)
T cd03251 184 LMK-NRTTFVIA----HRLSTIEN-AD 204 (234)
T ss_pred hcC-CCEEEEEe----cCHHHHhh-CC
Confidence 864 77877664 66654433 54
No 191
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.90 E-value=1.2e-23 Score=181.71 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCCC------------CCCCC-C------CcCCHHHhhh--
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA------------ENFDY-P------VAMDIRELIS-- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~---~G~i~i~~~d~~~------------~~~~~-~------~~~~i~~~i~-- 58 (236)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..+.| + +..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 110 (262)
T PRK09984 31 EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG 110 (262)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhh
Confidence 578999999999999999999999986 4999999976521 12333 2 2345555442
Q ss_pred ----------------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHH
Q 026589 59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (236)
Q Consensus 59 ----------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~ 113 (236)
+.++++.+++.+.... ....++++.+ +.||++++. +|+++|+||||+ ||+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~ 186 (262)
T PRK09984 111 ALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ--RVSTLSGGQQQRVAIARALMQ--QAKVILADEPIASLDPE 186 (262)
T ss_pred hcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC--CccccCHHHHHHHHHHHHHhc--CCCEEEecCccccCCHH
Confidence 4556777787642111 1234555544 999999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 114 THVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 114 ~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
++..+. ++++++++ .|.+++++. |.......+++.+++.
T Consensus 187 ~~~~l~-~~l~~~~~~~g~tvii~t----H~~~~~~~~~d~i~~l 226 (262)
T PRK09984 187 SARIVM-DTLRDINQNDGITVVVTL----HQVDYALRYCERIVAL 226 (262)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEEe----CCHHHHHHhCCEEEEE
Confidence 999999 99999875 478887774 8777667777644443
No 192
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.90 E-value=9.7e-24 Score=195.55 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--CC----------------CCCCCCCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AA----------------ENFDYPVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~--~~----------------~~~~~~~~~~i~~~i~------ 58 (236)
-+++|+|++||||||+.|+|+|+.+|++|.|.++|.+. .. ....+.|..+|++.+.
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 57899999999999999999999999999999999762 11 0112245667777654
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026589 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (236)
Q Consensus 59 -----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~ 124 (236)
+.++++..+|++.-..+++ ..+++|++ ++|||||+. +|+++|+|||++ ||+..+..++ ++++
T Consensus 398 ~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-~elSGGQrQRvaIARALa~--~P~lli~DEp~SaLDvsvqa~Vl-nLl~ 473 (539)
T COG1123 398 GGGSGAERRARVAELLELVGLPPEFLDRYP-HELSGGQRQRVAIARALAL--EPKLLILDEPVSALDVSVQAQVL-NLLK 473 (539)
T ss_pred cccchHHHHHHHHHHHHHcCCCHHHHhcCc-hhcCcchhHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHH-HHHH
Confidence 6778999999986445555 45667665 999999999 999999999999 9999999999 9999
Q ss_pred HHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhC
Q 026589 125 HLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 125 ~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
++++ .|.+.++|. |++.-+..+|+++.++..|.+...
T Consensus 474 ~lq~e~g~t~lfIS----HDl~vV~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 474 DLQEELGLTYLFIS----HDLAVVRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred HHHHHhCCEEEEEe----CCHHHHHhhCceEEEEECCeEEEe
Confidence 9986 599998885 888877777764444444444333
No 193
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.90 E-value=1.6e-23 Score=181.77 Aligned_cols=151 Identities=16% Similarity=0.176 Sum_probs=111.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC---------CCcCCHHHhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELI------ 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~---------~~~~~i~~~i------ 57 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| .+..++.+++
T Consensus 39 e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~ 118 (268)
T PRK10419 39 ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH 118 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh
Confidence 4789999999999999999999999999999999976521 12222 2233444433
Q ss_pred -----------hHHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 58 -----------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 58 -----------~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
.++++++.+++.+ ..... ...++++.+ +.||++++. +|+++|+||||+ ||..++..+. ++
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LS~Ge~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~ 193 (268)
T PRK10419 119 LLSLDKAERLARASEMLRAVDLDDSVLDKR--PPQLSGGQLQRVCLARALAV--EPKLLILDEAVSNLDLVLQAGVI-RL 193 (268)
T ss_pred hccCCHHHHHHHHHHHHHHcCCChhHhhCC--CccCChHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HH
Confidence 1556778888863 21111 234555544 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhC-CCcEEEEEecccccccchhhHhhhhHHHHHHHH
Q 026589 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
+++++++ +.+++++. |...+...+++.++....+.+
T Consensus 194 l~~~~~~~~~tiiivs----H~~~~i~~~~d~i~~l~~G~i 230 (268)
T PRK10419 194 LKKLQQQFGTACLFIT----HDLRLVERFCQRVMVMDNGQI 230 (268)
T ss_pred HHHHHHHcCcEEEEEE----CCHHHHHHhCCEEEEEECCEE
Confidence 9988764 78887775 887777777765555444443
No 194
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=197.17 Aligned_cols=146 Identities=14% Similarity=0.232 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CC---------cCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~i~------ 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| +| ..++.+++.
T Consensus 279 e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 358 (501)
T PRK10762 279 EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY 358 (501)
T ss_pred cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh
Confidence 5789999999999999999999999999999999876521 22444 22 234544331
Q ss_pred ----------------HHHHHHHhCCC-CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 59 ----------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 59 ----------------~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
++++++.+++. +..... ...+++|++ +.||++++. +|+++||||||+ ||+.++..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGekqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l 434 (501)
T PRK10762 359 FSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA--IGLLSGGNQQKVAIARGLMT--RPKVLILDEPTRGVDVGAKKEI 434 (501)
T ss_pred hcccccccCHHHHHHHHHHHHHhcCCCCCCccCc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCCCHhHHHHH
Confidence 45677888885 332222 345777654 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
. +++++++++|.+++++. |++.....+|+.+++.
T Consensus 435 ~-~~l~~~~~~g~tviivt----Hd~~~~~~~~d~v~~l 468 (501)
T PRK10762 435 Y-QLINQFKAEGLSIILVS----SEMPEVLGMSDRILVM 468 (501)
T ss_pred H-HHHHHHHHCCCEEEEEc----CCHHHHHhhCCEEEEE
Confidence 9 99999977788887774 8887777777644443
No 195
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=193.50 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCCCCcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~~~~~~~i~~~i~--------- 58 (236)
-+++++|.||||||||+|+|+|.++|++|+|.++|..... |++...++++|.+++-
T Consensus 35 EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~ 114 (500)
T COG1129 35 EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRF 114 (500)
T ss_pred eEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCC
Confidence 5899999999999999999999999999999999976531 4455566777777763
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026589 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (236)
Q Consensus 59 -----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~ 124 (236)
..++++++++... .......++-+.+ +.||+|+.. +++++||||||+ |.......++ ++++
T Consensus 115 g~id~~~m~~~A~~~l~~lg~~~~--~~~~v~~LsiaqrQ~VeIArAl~~--~arllIlDEPTaaLt~~E~~~Lf-~~ir 189 (500)
T COG1129 115 GLIDRKAMRRRARELLARLGLDID--PDTLVGDLSIAQRQMVEIARALSF--DARVLILDEPTAALTVKETERLF-DLIR 189 (500)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCC--hhhhhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHH
Confidence 6678888887511 1111222333222 999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
+|+++|.+++++. |.+.+...+|+++.++.+|...-..|
T Consensus 190 ~Lk~~Gv~ii~IS----Hrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 190 RLKAQGVAIIYIS----HRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhCCCEEEEEc----CcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999884 99999999998666655555544444
No 196
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.90 E-value=4.8e-23 Score=173.80 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe--cc--CCC-----------CCCCCC-CC------cCCHHHhhh--
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV--NL--DPA-----------AENFDY-PV------AMDIRELIS-- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~--~~--d~~-----------~~~~~~-~~------~~~i~~~i~-- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++ |. ++. ...++| ++ ..++++++.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 114 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP 114 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence 4789999999999999999999999999999997 32 321 112333 22 234444432
Q ss_pred --------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 59 --------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
+.++++.+++.+..... ....++++.+ +.||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 190 (224)
T TIGR02324 115 LLERGVPREAARARARELLARLNIPERLWHL-PPATFSGGEQQRVNIARGFIA--DYPILLLDEPTASLDAANRQVVV-E 190 (224)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhhC-CcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 45567778876421111 1234555544 999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++++|.+++++. |.......+++.+
T Consensus 191 ~l~~~~~~g~tii~vs----H~~~~~~~~~d~i 219 (224)
T TIGR02324 191 LIAEAKARGAALIGIF----HDEEVRELVADRV 219 (224)
T ss_pred HHHHHHhcCCEEEEEe----CCHHHHHHhccee
Confidence 9999876788887774 7766555555543
No 197
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=187.68 Aligned_cols=157 Identities=14% Similarity=0.184 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC----CCCceEEEeccCCCC-----------CCCCC-CC--------cCCHHHhh-
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELI- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~----~~~G~i~i~~~d~~~-----------~~~~~-~~--------~~~i~~~i- 57 (236)
-+++|+|+||||||||+++|+|+++ +++|+|.++|.++.. ..++| +| ..++.+++
T Consensus 34 e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~ 113 (330)
T PRK15093 34 EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLM 113 (330)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHH
Confidence 4789999999999999999999986 589999999987531 12333 22 22333222
Q ss_pred ---------------------hHHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-cc
Q 026589 58 ---------------------SLEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IE 111 (236)
Q Consensus 58 ---------------------~~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD 111 (236)
.+.++++.+||.+.. ...+. ..+++|++ ++||++++. +|++||+||||+ ||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p-~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD 190 (330)
T PRK15093 114 QNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP-YELTEGECQKVMIAIALAN--QPRLLIADEPTNAME 190 (330)
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc-hhCCHHHHHHHHHHHHHHC--CCCEEEEeCCCCcCC
Confidence 145678888887531 11122 35666654 999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 112 LFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 112 ~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
+.++.+++ ++++++++ .|.++++|. |++.....+++.++++..+.+....+
T Consensus 191 ~~~~~~i~-~lL~~l~~~~g~tii~it----Hdl~~v~~~~dri~vm~~G~ive~g~ 242 (330)
T PRK15093 191 PTTQAQIF-RLLTRLNQNNNTTILLIS----HDLQMLSQWADKINVLYCGQTVETAP 242 (330)
T ss_pred HHHHHHHH-HHHHHHHHhcCCEEEEEE----CCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999 99999976 488998885 88888888887666655555544333
No 198
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=197.15 Aligned_cols=144 Identities=15% Similarity=0.207 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CC---------cCCHHHhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELI------- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~i------- 57 (236)
-+++|+||||||||||+++|+|+++|++|+|+++|.++.. ..++| +| ..++.+++
T Consensus 280 e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~ 359 (501)
T PRK11288 280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH 359 (501)
T ss_pred cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchh
Confidence 5799999999999999999999999999999999875421 12223 21 23444432
Q ss_pred ---------------hHHHHHHHhCCC-CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 58 ---------------SLEDVMEELGLG-PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 58 ---------------~~~~~l~~~~l~-~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
.+.++++.+++. ...... ...+++|++ +.||++++. +|++|||||||+ ||+.++..+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l 435 (501)
T PRK11288 360 HLRAGCLINNRWEAENADRFIRSLNIKTPSREQL--IMNLSGGNQQKAILGRWLSE--DMKVILLDEPTRGIDVGAKHEI 435 (501)
T ss_pred hcccccccChHHHHHHHHHHHHhcCcccCCccCc--cccCCHHHHHHHHHHHHHcc--CCCEEEEcCCCCCCCHhHHHHH
Confidence 145677788884 322222 245666655 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhH
Q 026589 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
+ ++++++++.|.+|+++. |+......+++.++
T Consensus 436 ~-~~l~~l~~~g~tviivs----Hd~~~~~~~~d~i~ 467 (501)
T PRK11288 436 Y-NVIYELAAQGVAVLFVS----SDLPEVLGVADRIV 467 (501)
T ss_pred H-HHHHHHHhCCCEEEEEC----CCHHHHHhhCCEEE
Confidence 9 99999987888987774 88888888776443
No 199
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=8.1e-24 Score=196.67 Aligned_cols=154 Identities=16% Similarity=0.087 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-CCCCCCCCcCCHHHhhh----------------HHHHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS----------------LEDVMEE 65 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~-~~~~~~~~~~~i~~~i~----------------~~~~l~~ 65 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. .....+.+..++++++. +.++++.
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~ 130 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF 130 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999886521 11122334456666542 3356777
Q ss_pred hCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccc
Q 026589 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (236)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~ 142 (236)
+++.+..... ...+++|++ ++||++++. +|+++||||||+ ||+.++..++ +++++++++|.+++++. |
T Consensus 131 lgL~~~ld~~--~~~LSGGQrQRVaLArAL~~--~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~G~TIIIVS----H 201 (549)
T PRK13545 131 ADIGKFIYQP--VKTYSSGMKSRLGFAISVHI--NPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQGKTIFFIS----H 201 (549)
T ss_pred cCChhHhhCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEE----C
Confidence 8886542222 234666654 899999999 999999999999 9999999999 88998877788887775 8
Q ss_pred cccchhhHhhhhHHHHHHHHhhC
Q 026589 143 FITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 143 ~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
.......+|+.++....+.+...
T Consensus 202 dl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 202 SLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred CHHHHHHhCCEEEEEECCEEEEE
Confidence 88777788876666655554433
No 200
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.7e-23 Score=179.65 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC---------CCCCCC-CC------cCCHHHhhh---
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV------AMDIRELIS--- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~---------~~~~~~-~~------~~~i~~~i~--- 58 (236)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++. ...++| ++ ..++.+++.
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 110 (253)
T PRK14267 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGV 110 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHH
Confidence 47899999999999999999999987 4999999987653 122333 22 345555543
Q ss_pred ---------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 59 ---------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 59 ---------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
+.++++.+++.+.. ........++++.+ +.||++++. +|+++|+||||+ ||+.++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l 188 (253)
T PRK14267 111 KLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM--KPKILLMDEPTANIDPVGTAKI 188 (253)
T ss_pred HhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 23455666664310 01112234555544 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
. ++++++++ +.+++++. |.......+++.+++.
T Consensus 189 ~-~~l~~~~~-~~tiii~s----H~~~~~~~~~d~i~~l 221 (253)
T PRK14267 189 E-ELLFELKK-EYTIVLVT----HSPAQAARVSDYVAFL 221 (253)
T ss_pred H-HHHHHHhh-CCEEEEEE----CCHHHHHhhCCEEEEE
Confidence 9 99998865 67777664 8777666777544433
No 201
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.90 E-value=1.9e-23 Score=179.70 Aligned_cols=146 Identities=17% Similarity=0.220 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CC--CCCCCCCCc--CCHHHhh---------hHHHHHHHhCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENFDYPVA--MDIRELI---------SLEDVMEELGL 68 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-~~--~~~~~~~~~--~~i~~~i---------~~~~~l~~~~l 68 (236)
-+++|+||||||||||+++|+|+++|++|+|.+++.. ++ .+...+.+. .++++++ .+.++++.+++
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl 110 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999987631 10 111111111 2344432 15667888888
Q ss_pred CCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCcEEEEEecccccc
Q 026589 69 GPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFI 144 (236)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~ 144 (236)
.+..... ...++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++.++ |.+++++. |..
T Consensus 111 ~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tiiivs----H~~ 181 (251)
T PRK09544 111 GHLIDAP--MQKLSGGETQRVLLARALLN--RPQLLVLDEPTQGVDVNGQVALY-DLIDQLRRELDCAVLMVS----HDL 181 (251)
T ss_pred hHHHhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEEe----cCH
Confidence 7532211 245666654 999999999 999999999999 9999999999 889888764 88887775 888
Q ss_pred cchhhHhhhhHHH
Q 026589 145 TDVTKFISGCMAS 157 (236)
Q Consensus 145 ~d~~~~~~~~l~~ 157 (236)
.+...+++.++..
T Consensus 182 ~~i~~~~d~i~~l 194 (251)
T PRK09544 182 HLVMAKTDEVLCL 194 (251)
T ss_pred HHHHHhCCEEEEE
Confidence 7777777655443
No 202
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.90 E-value=5.1e-23 Score=174.09 Aligned_cols=136 Identities=17% Similarity=0.146 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~ 113 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD 113 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChH
Confidence 4789999999999999999999999999999999876531 22333 21 125666542
Q ss_pred ---HHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ---LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ---~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
+.++++.+++.. ..... ...++++.+ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++ .|
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 188 (225)
T PRK10247 114 PAIFLDDLERFALPDTILTKN--IAELSGGEKQRISLIRNLQF--MPKVLLLDEITSALDESNKHNVN-EIIHRYVREQN 188 (225)
T ss_pred HHHHHHHHHHcCCChHHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 456777888853 11111 234555543 999999999 999999999999 9999999999 88998865 47
Q ss_pred CcEEEEEecccccccch
Q 026589 131 FNVCAVYLLDSQFITDV 147 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~ 147 (236)
.+++++. |.....
T Consensus 189 ~tvii~s----h~~~~~ 201 (225)
T PRK10247 189 IAVLWVT----HDKDEI 201 (225)
T ss_pred CEEEEEE----CChHHH
Confidence 8887774 655443
No 203
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=179.87 Aligned_cols=142 Identities=19% Similarity=0.297 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-CC-----cCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 39 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 118 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPR 118 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHH
Confidence 47899999999999999999999985 79999999876421 22333 22 135555543
Q ss_pred ------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 59 ------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 59 ------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
+.++++.+++.+. .........++++.+ ++||++++. +|+++|+||||+ ||+.++..++ +
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 195 (258)
T PRK14268 119 IHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV--KPKIILFDEPTSALDPISTARIE-D 195 (258)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-H
Confidence 3446777776421 001112244555544 999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCcEEEEEecccccccchhhHhh
Q 026589 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (236)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~ 152 (236)
+++++++ +.+++++. |...+...+++
T Consensus 196 ~l~~l~~-~~tiiivs----H~~~~~~~~~d 221 (258)
T PRK14268 196 LIMNLKK-DYTIVIVT----HNMQQAARISD 221 (258)
T ss_pred HHHHHhh-CCEEEEEE----CCHHHHHHhCC
Confidence 9999864 77887774 88777667665
No 204
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.2e-23 Score=183.38 Aligned_cols=150 Identities=11% Similarity=0.112 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-------~~~i~~~i~--------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++.+++.
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~ 113 (277)
T PRK13642 34 EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIP 113 (277)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCC
Confidence 4789999999999999999999999999999999977532 12333 11 235555543
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++++.+++....... ...++++++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 114 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~lAraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~ 188 (277)
T PRK13642 114 REEMIKRVDEALLAVNMLDFKTRE--PARLSGGQKQRVAVAGIIAL--RPEIIILDESTSMLDPTGRQEIM-RVIHEIKE 188 (277)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34566777776432211 234555544 999999999 999999999999 9999999999 89999876
Q ss_pred C-CCcEEEEEecccccccchhhHhhhhHHHHHHHH
Q 026589 129 R-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 129 ~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
+ |.+++++. |...... .++.+++...+.+
T Consensus 189 ~~g~tiil~s----H~~~~~~-~~d~i~~l~~G~i 218 (277)
T PRK13642 189 KYQLTVLSIT----HDLDEAA-SSDRILVMKAGEI 218 (277)
T ss_pred hcCCEEEEEe----CCHHHHH-hCCEEEEEECCEE
Confidence 4 88888774 7776554 3654444444443
No 205
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=4.8e-23 Score=187.13 Aligned_cols=150 Identities=13% Similarity=0.187 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCCCCcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~~~~~~~i~~~i~--------- 58 (236)
.+.+++|.||+|||||+++|.|+++|++|+|+++|....- +++.+.+.+|+.|++-
T Consensus 31 eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~ 110 (501)
T COG3845 31 EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG 110 (501)
T ss_pred cEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc
Confidence 5789999999999999999999999999999999976521 4555566777777763
Q ss_pred ----------HHHHHHHhCCCCCCch-hhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGL-IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~-~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
++++++++|+.-+... +..+ ....++++.|.++|.. +|++|||||||+ |-|....+++ ++++.|
T Consensus 111 ~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dL-sVG~qQRVEIlKaLyr--~a~iLILDEPTaVLTP~E~~~lf-~~l~~l 186 (501)
T COG3845 111 LIDRRQARARIKELSERYGLPVDPDAKVADL-SVGEQQRVEILKALYR--GARLLILDEPTAVLTPQEADELF-EILRRL 186 (501)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCccceeecC-CcchhHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 7888999998743222 2111 1122344999999999 999999999999 9999999999 999999
Q ss_pred HhCCCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
+++|++|++++ |.+.++-.+++++-+...+
T Consensus 187 ~~~G~tIi~IT----HKL~Ev~~iaDrvTVLR~G 216 (501)
T COG3845 187 AAEGKTIIFIT----HKLKEVMAIADRVTVLRRG 216 (501)
T ss_pred HHCCCEEEEEe----ccHHHHHHhhCeeEEEeCC
Confidence 99999999885 9999999988755444443
No 206
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-23 Score=201.89 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC----------C-----------CCCCCC-C--------CcCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----------A-----------AENFDY-P--------VAMD 52 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~----------~-----------~~~~~~-~--------~~~~ 52 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++ . ...++| + +..+
T Consensus 43 e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~t 122 (623)
T PRK10261 43 ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT 122 (623)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCC
Confidence 57899999999999999999999999999999877421 0 112333 2 2346
Q ss_pred HHHhhh-----------------HHHHHHHhCCCCCC-chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-cc
Q 026589 53 IRELIS-----------------LEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IE 111 (236)
Q Consensus 53 i~~~i~-----------------~~~~l~~~~l~~~~-~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD 111 (236)
+++++. +.++++.+|+.+.. ........++++++ ++||++++. +|++||+||||+ ||
T Consensus 123 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~--~P~lLllDEPt~~LD 200 (623)
T PRK10261 123 VGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC--RPAVLIADEPTTALD 200 (623)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCccC
Confidence 666542 44578888885311 11112345777665 999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhC-CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeee
Q 026589 112 LFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (236)
Q Consensus 112 ~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~v 171 (236)
+.++..++ +++++++++ |.+||++. |.+.....+++.++++..+.+....+.-.+
T Consensus 201 ~~~~~~l~-~ll~~l~~~~g~tvi~it----Hdl~~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 201 VTIQAQIL-QLIKVLQKEMSMGVIFIT----HDMGVVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred HHHHHHHH-HHHHHHHHhcCCEEEEEc----CCHHHHHHhCCEEEEeeCCeecccCCHHHh
Confidence 99999999 999999754 88888774 998888899988888777777655554333
No 207
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1e-23 Score=181.95 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
.+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| +++ .++++++.
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~ 119 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVR 119 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHh
Confidence 5789999999999999999999986 589999999876521 12333 221 35555442
Q ss_pred -------------HHHHHHHhCCCCCC-c-hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~-~-~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+.. . .......++++++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 196 (260)
T PRK10744 120 LFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI--RPEVLLLDEPCSALDPISTGRIE- 196 (260)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 34566777764210 0 0111234555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++++ +.+++++. |...+...+++.+
T Consensus 197 ~~L~~~~~-~~tiii~s----H~~~~~~~~~d~i 225 (260)
T PRK10744 197 ELITELKQ-DYTVVIVT----HNMQQAARCSDYT 225 (260)
T ss_pred HHHHHHhc-CCeEEEEe----CCHHHHHHhCCEE
Confidence 89999854 67776664 7777666666533
No 208
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.7e-23 Score=173.14 Aligned_cols=140 Identities=16% Similarity=0.191 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC---CCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhhHHHHHHHh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELISLEDVMEEL 66 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~---~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~~~~~l~~~ 66 (236)
.+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| .+..++++++.....+
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--- 110 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC--- 110 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhh---
Confidence 5789999999999999999999999 899999999987532 12333 2235677765432111
Q ss_pred CCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCcEEEEEecccc
Q 026589 67 GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQ 142 (236)
Q Consensus 67 ~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~ 142 (236)
.... ....++++.+ +.||++++. +|+++|+|||++ ||+.++..++ +++++++++ +.+++++. +|
T Consensus 111 ~~~~------~~~~LS~Ge~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~~---~h 178 (202)
T cd03233 111 KGNE------FVRGISGGERKRVSIAEALVS--RASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVSL---YQ 178 (202)
T ss_pred cccc------chhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEE---cC
Confidence 1111 1234555543 899999999 999999999999 9999999999 999998764 55555442 25
Q ss_pred cccchhhHhhhhHHH
Q 026589 143 FITDVTKFISGCMAS 157 (236)
Q Consensus 143 ~~~d~~~~~~~~l~~ 157 (236)
...+...+++.+++.
T Consensus 179 ~~~~~~~~~d~i~~l 193 (202)
T cd03233 179 ASDEIYDLFDKVLVL 193 (202)
T ss_pred CHHHHHHhCCeEEEE
Confidence 455566666544443
No 209
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.5e-23 Score=179.33 Aligned_cols=144 Identities=19% Similarity=0.271 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-C------CcCCHHHhhh---
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-P------VAMDIRELIS--- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~------~~~~i~~~i~--- 58 (236)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| + +..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~ 110 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL 110 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHH
Confidence 57899999999999999999999974 69999999976521 12333 2 2345665543
Q ss_pred --------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 026589 59 --------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (236)
Q Consensus 59 --------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~ 119 (236)
++++++.+++.+. .........++++.+ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~ 188 (258)
T PRK14241 111 KLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV--EPDVLLMDEPCSALDPISTLAIE 188 (258)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH
Confidence 2345566676421 011111234555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++++ +.+++++. |...+...+++.+
T Consensus 189 -~~l~~~~~-~~tviivs----H~~~~~~~~~d~i 217 (258)
T PRK14241 189 -DLINELKQ-DYTIVIVT----HNMQQAARVSDQT 217 (258)
T ss_pred -HHHHHHhc-CCEEEEEe----cCHHHHHHhCCEE
Confidence 99999854 57777664 8777777776533
No 210
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.89 E-value=1.6e-23 Score=169.03 Aligned_cols=124 Identities=14% Similarity=0.156 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++... +.++ ..-...++-+ .++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--------~~~~-----~~~~~i~~~~---------qLS 84 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA--------SPRD-----ARRAGIAMVY---------QLS 84 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcC--------CHHH-----HHhcCeEEEE---------ecC
Confidence 57899999999999999999999999999999998765321 0100 0000111111 033
Q ss_pred hcH--HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhH
Q 026589 83 DNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 83 ~~~--s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
+++ ++.+|++++. +|+++|+|||++ ||+.++..+. ++++++++++.+++++. |...+...+++.++
T Consensus 85 ~G~~qrl~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~s----h~~~~~~~~~d~~~ 153 (163)
T cd03216 85 VGERQMVEIARALAR--NARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVAVIFIS----HRLDEVFEIADRVT 153 (163)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEe----CCHHHHHHhCCEEE
Confidence 443 3999999999 999999999999 9999999999 99999876688887774 77766666665443
No 211
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.89 E-value=1.3e-23 Score=176.66 Aligned_cols=145 Identities=19% Similarity=0.162 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+.| ++ ..++.+++. +
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 110 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERI 110 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHH
Confidence 4789999999999999999999999999999999876421 12333 22 135666542 3
Q ss_pred HHHHHHhCCCCCCchhh---------hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGPNGGLIY---------CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~~~~~~~---------~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++.+++.+...... ....++++++ +.||++++. +|+++|+||||+ ||+.++..++ +++++++
T Consensus 111 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 187 (220)
T cd03245 111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN--DPPILLLDEPTSAMDMNSEERLK-ERLRQLL 187 (220)
T ss_pred HHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 45666666643211100 0124555544 999999999 999999999999 9999999999 9999886
Q ss_pred hCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 128 SRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++ .+++++. |..... .+++.++.
T Consensus 188 ~~-~tii~~s----H~~~~~-~~~d~v~~ 210 (220)
T cd03245 188 GD-KTLIIIT----HRPSLL-DLVDRIIV 210 (220)
T ss_pred CC-CEEEEEe----CCHHHH-HhCCEEEE
Confidence 54 6776664 666544 45554433
No 212
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.89 E-value=2e-23 Score=179.11 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC------cCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV------AMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~------~~~i~~~i~---------- 58 (236)
.+++|+||||||||||+++|+|+++ .+|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 23 ei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~ 101 (248)
T PRK03695 23 EILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTE 101 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCcH
Confidence 5789999999999999999999986 48999999976531 12333 22 234555432
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhc-----CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDN-----YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~-----~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++.+..... ...++++++ ++||++++. -.+|+++|+||||+ ||+.++..+. +++++
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~-~~L~~ 178 (248)
T PRK03695 102 AVASALNEVAEALGLDDKLGRS--VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD-RLLSE 178 (248)
T ss_pred HHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 45677888886532221 234555554 899999984 01469999999999 9999999999 99999
Q ss_pred HHhCCCcEEEEEecccccccchhhHhhhhHHHH
Q 026589 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~ 158 (236)
++++|.+++++. |...+...+++.++...
T Consensus 179 ~~~~~~tvi~~s----H~~~~~~~~~d~i~~l~ 207 (248)
T PRK03695 179 LCQQGIAVVMSS----HDLNHTLRHADRVWLLK 207 (248)
T ss_pred HHhCCCEEEEEe----cCHHHHHHhCCEEEEEE
Confidence 876788887774 88777777776444433
No 213
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.5e-23 Score=181.67 Aligned_cols=147 Identities=19% Similarity=0.247 Sum_probs=104.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh---
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS--- 58 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~--- 58 (236)
+.+++|+||||||||||+++|+|+++| ++|+|+++|.++.. ..++| +++ .++.+++.
T Consensus 45 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~ 124 (267)
T PRK14235 45 KTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGP 124 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHH
Confidence 357899999999999999999999975 89999999976531 12333 221 25555442
Q ss_pred ---------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 59 ---------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 59 ---------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
+.++++.+++.+.. ........++++++ +.||++++. +|+++||||||+ ||+.++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 202 (267)
T PRK14235 125 RIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV--SPEVILMDEPCSALDPIATAKV 202 (267)
T ss_pred HhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHH
Confidence 23456667774310 01111234555543 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
. ++++++++ +.+++++. |.......+++.+++
T Consensus 203 ~-~~L~~l~~-~~tiiivt----H~~~~~~~~~d~v~~ 234 (267)
T PRK14235 203 E-ELIDELRQ-NYTIVIVT----HSMQQAARVSQRTAF 234 (267)
T ss_pred H-HHHHHHhc-CCeEEEEE----cCHHHHHhhCCEEEE
Confidence 9 99999865 67777664 777766666654333
No 214
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.1e-23 Score=178.92 Aligned_cols=146 Identities=13% Similarity=0.212 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-CC-----cCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14251 31 ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLK 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHHHH
Confidence 4789999999999999999999987 479999999976521 12333 22 135665543
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++... .........++++++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~- 187 (251)
T PRK14251 111 IAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAV--RPKVVLLDEPTSALDPISSSEIE- 187 (251)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCccCCHHHHHHHH-
Confidence 2344556666321 011112244555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++++ +.+++++. |...+...+++.++.
T Consensus 188 ~~l~~~~~-~~tiiiis----H~~~~~~~~~d~i~~ 218 (251)
T PRK14251 188 ETLMELKH-QYTFIMVT----HNLQQAGRISDQTAF 218 (251)
T ss_pred HHHHHHHc-CCeEEEEE----CCHHHHHhhcCEEEE
Confidence 88988854 67777774 887777776654433
No 215
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.89 E-value=3.2e-23 Score=177.80 Aligned_cols=140 Identities=11% Similarity=0.147 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCC------C--CCCC-CC------cCCHHHhh--------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA------E--NFDY-PV------AMDIRELI-------- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~--l~~~~G~i~i~~~d~~~------~--~~~~-~~------~~~i~~~i-------- 57 (236)
-+++|+||||||||||+++|+|+ ++|++|+|.++|.++.. . .+.| ++ ..++.+++
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~ 113 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKR 113 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhh
Confidence 57899999999999999999998 57999999999876532 1 1212 12 12333321
Q ss_pred ---------------hHHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 58 ---------------~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
.+.++++.+++.+ ..... ..+.++++.+ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 190 (252)
T CHL00131 114 KFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-VNEGFSGGEKKRNEILQMALL--DSELAILDETDSGLDIDALKII 190 (252)
T ss_pred cccccccccHHHHHHHHHHHHHHcCCchhhhccc-cccCCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHH
Confidence 1345677777763 21111 1112555544 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhH
Q 026589 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (236)
. +++++++++|.++++++ |.......+
T Consensus 191 ~-~~l~~~~~~g~tii~~t----H~~~~~~~~ 217 (252)
T CHL00131 191 A-EGINKLMTSENSIILIT----HYQRLLDYI 217 (252)
T ss_pred H-HHHHHHHhCCCEEEEEe----cCHHHHHhh
Confidence 9 99999876788887774 666544443
No 216
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=1.3e-23 Score=198.19 Aligned_cols=155 Identities=14% Similarity=0.184 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC-----------CCCCC-CCc--------CCHHHhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDY-PVA--------MDIRELI 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~-----------~~~~~-~~~--------~~i~~~i 57 (236)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| +|+ .++++++
T Consensus 36 e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~ 115 (529)
T PRK15134 36 ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL 115 (529)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHH
Confidence 47899999999999999999999986 79999999876521 13444 332 2333322
Q ss_pred -----------------hHHHHHHHhCCCCCC-chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHH
Q 026589 58 -----------------SLEDVMEELGLGPNG-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (236)
Q Consensus 58 -----------------~~~~~l~~~~l~~~~-~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~ 116 (236)
.++++++.+|+.... ........+++|++ ++||++++. +|++||+||||+ ||+.++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~--~p~llllDEPt~~LD~~~~~ 193 (529)
T PRK15134 116 YEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT--RPELLIADEPTTALDVSVQA 193 (529)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCccCHHHHH
Confidence 145678888886421 11112345666654 999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEecccccccchhhHhhhhHHHHHHHHhh
Q 026589 117 PVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (236)
Q Consensus 117 ~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~ 164 (236)
.++ +++++++++ |.++|++. |.......+++.+++...+.+..
T Consensus 194 ~l~-~~l~~l~~~~g~tvi~vt----Hd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 194 QIL-QLLRELQQELNMGLLFIT----HNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred HHH-HHHHHHHHhcCCeEEEEc----CcHHHHHHhcCEEEEEECCEEEE
Confidence 999 999998764 88888774 88887778887776665555443
No 217
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.7e-23 Score=170.33 Aligned_cols=130 Identities=14% Similarity=0.198 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCC---CCCCCC-------CCcCCHHHhhhHHHHHHHhCCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPA---AENFDY-------PVAMDIRELISLEDVMEELGLGP 70 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l--~~~~G~i~i~~~d~~---~~~~~~-------~~~~~i~~~i~~~~~l~~~~l~~ 70 (236)
-+++|+||||||||||+++|+|+. +|++|+|.++|.++. ...+.| .+..++++++.....++
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------ 107 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR------ 107 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh------
Confidence 478999999999999999999986 489999999997752 122333 22346677655322211
Q ss_pred CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccc-
Q 026589 71 NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD- 146 (236)
Q Consensus 71 ~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d- 146 (236)
.++++.+ +.||++++. +|+++|+|||++ ||+.++..++ ++++++++.|.+++++. |...+
T Consensus 108 ---------~LSgGe~qrv~la~al~~--~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiiivt----H~~~~~ 171 (192)
T cd03232 108 ---------GLSVEQRKRLTIGVELAA--KPSILFLDEPTSGLDSQAAYNIV-RFLKKLADSGQAILCTI----HQPSAS 171 (192)
T ss_pred ---------cCCHHHhHHHHHHHHHhc--CCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCEEEEEE----cCChHH
Confidence 2444433 999999999 999999999999 9999999999 88999876788887774 66652
Q ss_pred hhhHhhhh
Q 026589 147 VTKFISGC 154 (236)
Q Consensus 147 ~~~~~~~~ 154 (236)
...+++.+
T Consensus 172 ~~~~~d~i 179 (192)
T cd03232 172 IFEKFDRL 179 (192)
T ss_pred HHhhCCEE
Confidence 44555433
No 218
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.89 E-value=2e-23 Score=195.54 Aligned_cols=148 Identities=14% Similarity=0.208 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCC--------CCCCC-CC---------cCCHHHhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDY-PV---------AMDIRELI------ 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~i------ 57 (236)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| +| ..++++++
T Consensus 287 e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~ 366 (500)
T TIGR02633 287 EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK 366 (500)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh
Confidence 57899999999999999999999995 89999999876521 12332 11 22333322
Q ss_pred ---------------hHHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 58 ---------------~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
.++++++.+++.. ..... ...+++|++ ++||++++. +|++|||||||+ ||+.++..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l 442 (500)
T TIGR02633 367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP--IGRLSGGNQQKAVLAKMLLT--NPRVLILDEPTRGVDVGAKYEI 442 (500)
T ss_pred hhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc--cccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence 1456778888853 22221 245666654 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHH
Q 026589 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (236)
+ +++++++++|.+++++ +|++.....+|+.++....
T Consensus 443 ~-~~l~~l~~~g~tviiv----sHd~~~~~~~~d~v~~l~~ 478 (500)
T TIGR02633 443 Y-KLINQLAQEGVAIIVV----SSELAEVLGLSDRVLVIGE 478 (500)
T ss_pred H-HHHHHHHhCCCEEEEE----CCCHHHHHHhCCEEEEEEC
Confidence 9 9999998778888777 4888888888865554433
No 219
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2e-23 Score=179.03 Aligned_cols=146 Identities=17% Similarity=0.229 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC---CCC--CCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRH---CET--VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~---l~~--~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+ ++| ++|+|.++|.++.. ..++| +++ .++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~ 109 (250)
T PRK14245 30 SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHH
Confidence 57899999999999999999997 454 58999999976531 12343 221 25555442
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+.. ........++++++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 186 (250)
T PRK14245 110 VNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV--SPSVLLMDEPASALDPISTAKVE- 186 (250)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 34566677774311 11111234666554 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++++++ ++.+++++. |...+...+++.++.
T Consensus 187 ~~l~~~~-~~~tiiivt----H~~~~~~~~~d~v~~ 217 (250)
T PRK14245 187 ELIHELK-KDYTIVIVT----HNMQQAARVSDKTAF 217 (250)
T ss_pred HHHHHHh-cCCeEEEEe----CCHHHHHhhCCEEEE
Confidence 9999985 477887774 877766676653333
No 220
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.6e-23 Score=180.57 Aligned_cols=147 Identities=17% Similarity=0.239 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC--C---CCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~--~---~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 39 e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 118 (259)
T PRK14274 39 EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPR 118 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHH
Confidence 4789999999999999999999987 3 58999999976531 22334 221 25555442
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+. .........++++++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 195 (259)
T PRK14274 119 IHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT--NPDVLLMDEPTSALDPVSTRKIE- 195 (259)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-
Confidence 2334556666431 001111234555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
++++++++ +.+++++. |...+...+++.+++.
T Consensus 196 ~~l~~~~~-~~tiiivt----H~~~~~~~~~d~i~~l 227 (259)
T PRK14274 196 ELILKLKE-KYTIVIVT----HNMQQAARVSDQTAFF 227 (259)
T ss_pred HHHHHHhc-CCEEEEEE----cCHHHHHHhCCEEEEE
Confidence 99999865 67777774 7777777777644443
No 221
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.89 E-value=5.4e-23 Score=192.67 Aligned_cols=153 Identities=14% Similarity=0.121 Sum_probs=115.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccCCCC--------CCCCC-CC------cCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~--~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~------- 58 (236)
.+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| +| ..++++++.
T Consensus 28 e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 107 (500)
T TIGR02633 28 ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITL 107 (500)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccc
Confidence 57999999999999999999999987 79999999876531 22333 22 234444321
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+.++++.+++...... .....+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgG~~qrv~iA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 183 (500)
T TIGR02633 108 PGGRMAYNAMYLRAKNLLRELQLDADNVT-RPVGDYGGGQQQLVEIAKALNK--QARLLILDEPSSSLTEKETEILL-DI 183 (500)
T ss_pred cccccCHHHHHHHHHHHHHHcCCCCCccc-CchhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HH
Confidence 4567788888653211 11345777655 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
+++++++|.++++++ |.......+|+.++....+.+.
T Consensus 184 l~~l~~~g~tviiit----Hd~~~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 184 IRDLKAHGVACVYIS----HKLNEVKAVCDTICVIRDGQHV 220 (500)
T ss_pred HHHHHhCCCEEEEEe----CcHHHHHHhCCEEEEEeCCeEe
Confidence 999977788888775 8777777777777666555443
No 222
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.89 E-value=1.2e-23 Score=178.90 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCc-----CCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~----------~ 59 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| +++ .++++++. .
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 109 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEV 109 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHH
Confidence 5789999999999999999999999999999999976521 22333 221 25555543 1
Q ss_pred HHHHHHhCCCCC------C---chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGPN------G---GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~~------~---~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.+.++..++... + ........++++.+ +.||++++. +|+++|+|||++ ||+.++..++ +++++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~ 186 (238)
T cd03249 110 EEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR--NPKILLLDEATSALDAESEKLVQ-EALDRAM 186 (238)
T ss_pred HHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 112222222110 0 00001123555543 999999999 999999999999 9999999999 8888886
Q ss_pred hCCCcEEEEEecccccccchhhHhh
Q 026589 128 SRNFNVCAVYLLDSQFITDVTKFIS 152 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~ 152 (236)
+|.+++++. |...+.. +|+
T Consensus 187 -~g~~vi~~s----h~~~~~~-~~d 205 (238)
T cd03249 187 -KGRTTIVIA----HRLSTIR-NAD 205 (238)
T ss_pred -CCCEEEEEe----CCHHHHh-hCC
Confidence 688887764 7666543 454
No 223
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.8e-23 Score=176.85 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCc-----CCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~----------~ 59 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| +++ .++++++. +
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~ 109 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEV 109 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHH
Confidence 4689999999999999999999999999999999876531 22333 221 14444432 2
Q ss_pred HHHHHHhCCCCCCc---------hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGPNGG---------LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~~~~---------~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++.+++.+... .......++++++ +.||++++. +|+++|+|||++ ||+.++..++ +++++++
T Consensus 110 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 186 (229)
T cd03254 110 IEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR--DPKILILDEATSNIDTETEKLIQ-EALEKLM 186 (229)
T ss_pred HHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 22333333321100 0000123555543 999999999 999999999999 9999999999 8888885
Q ss_pred hCCCcEEEEEecccccccch
Q 026589 128 SRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~ 147 (236)
++.+++++. |...+.
T Consensus 187 -~~~tii~~s----h~~~~~ 201 (229)
T cd03254 187 -KGRTSIIIA----HRLSTI 201 (229)
T ss_pred -CCCEEEEEe----cCHHHH
Confidence 477887764 665543
No 224
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.89 E-value=3e-23 Score=195.31 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe-ccC---CC----------CCCCCC-CC------cCCHHHhhh---
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLD---PA----------AENFDY-PV------AMDIRELIS--- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~-~~d---~~----------~~~~~~-~~------~~~i~~~i~--- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++ |.+ +. ...++| +| ..++.+++.
T Consensus 311 e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 390 (520)
T TIGR03269 311 EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI 390 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHH
Confidence 4789999999999999999999999999999996 531 10 122344 22 346666552
Q ss_pred ------------HHHHHHHhCCCCCC---chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 ------------LEDVMEELGLGPNG---GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 ------------~~~~l~~~~l~~~~---~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.... ........+++|++ ++||++++. +|++||+||||+ ||+.++..++
T Consensus 391 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lLllDEPt~~LD~~~~~~l~- 467 (520)
T TIGR03269 391 GLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK--EPRIVILDEPTGTMDPITKVDVT- 467 (520)
T ss_pred HcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 34567888886410 11122356777765 999999999 999999999999 9999999999
Q ss_pred HHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHH
Q 026589 121 NFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (236)
Q Consensus 121 ~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~ 158 (236)
++++++++ .|.++++++ |.......+++.++...
T Consensus 468 ~~l~~l~~~~g~tvi~vs----Hd~~~~~~~~d~i~~l~ 502 (520)
T TIGR03269 468 HSILKAREEMEQTFIIVS----HDMDFVLDVCDRAALMR 502 (520)
T ss_pred HHHHHHHHHcCcEEEEEe----CCHHHHHHhCCEEEEEE
Confidence 99999875 488888775 88877777776544443
No 225
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.6e-23 Score=177.69 Aligned_cols=148 Identities=17% Similarity=0.243 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC--C---CCceEEEeccCCCC---------CCCCC-CC------cCCHHHhhh---
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PV------AMDIRELIS--- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~--~---~~G~i~i~~~d~~~---------~~~~~-~~------~~~i~~~i~--- 58 (236)
-+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 110 (252)
T PRK14256 31 SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGY 110 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHH
Confidence 4789999999999999999999986 4 68999999976531 12333 22 345555442
Q ss_pred --------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 026589 59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (236)
Q Consensus 59 --------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~ 119 (236)
+.++++.+++.... ........++++++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~ 188 (252)
T PRK14256 111 KLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV--KPEVILMDEPASALDPISTLKIE 188 (252)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH
Confidence 33455566764310 00011233555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHH
Q 026589 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (236)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~ 158 (236)
++++++++ +.+++++. |...+...+|+.++...
T Consensus 189 -~~l~~~~~-~~tiiivs----H~~~~~~~~~d~i~~l~ 221 (252)
T PRK14256 189 -ELIEELKE-KYTIIIVT----HNMQQAARVSDYTAFFY 221 (252)
T ss_pred -HHHHHHHh-CCcEEEEE----CCHHHHHhhCCEEEEEE
Confidence 89999865 56777664 88777777776444433
No 226
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=2.5e-23 Score=174.88 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--CCCCCCCCCcCCHHHhhh----------------HHHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS----------------LEDVME 64 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~--~~~~~~~~~~~~i~~~i~----------------~~~~l~ 64 (236)
-.+||+|+||||||||+|+|+|.++|++|+|.+.|.-. -....++.+++|.+|++. ++++.+
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIie 133 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIE 133 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999998542 234567778888888875 677777
Q ss_pred HhCCCCCCchhhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEeccccc
Q 026589 65 ELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 143 (236)
Q Consensus 65 ~~~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~ 143 (236)
.-+|++..... +..+++++.+.||-+++...+|++||+||-.+ -|..=+++.. +.++++.+++.++++|. |.
T Consensus 134 FaELG~fi~~P--vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~-~rl~e~~~~~~tiv~VS----Hd 206 (249)
T COG1134 134 FAELGDFIDQP--VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL-ERLNELVEKNKTIVLVS----HD 206 (249)
T ss_pred HHHHHHHhhCc--hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH-HHHHHHHHcCCEEEEEE----CC
Confidence 77888764333 45677777655555555444999999999999 9999999988 88888877778888885 88
Q ss_pred ccchhhHhhhhHHHHHHHHhhCC
Q 026589 144 ITDVTKFISGCMASLSAMVQLEL 166 (236)
Q Consensus 144 ~~d~~~~~~~~l~~~~~~i~~~~ 166 (236)
.....++|+++++...|.+++..
T Consensus 207 ~~~I~~~Cd~~i~l~~G~i~~~G 229 (249)
T COG1134 207 LGAIKQYCDRAIWLEHGQIRMEG 229 (249)
T ss_pred HHHHHHhcCeeEEEeCCEEEEcC
Confidence 88888999766665555544443
No 227
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1e-23 Score=179.95 Aligned_cols=168 Identities=14% Similarity=0.190 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-----------CCCCCCC-------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----------AAENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~-----------~~~~~~~-------~~~~~i~~~i~------ 58 (236)
-++++.|++||||||++++|+|+.+|+.|.|.++|.-. ....++| +++++|+.++.
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 47899999999999999999999999999999998533 2344555 34566766654
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CC
Q 026589 59 ----LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (236)
Q Consensus 59 ----~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (236)
.+++...+|+++...+.. ..++++ ++++|+|||.. .|++|++|||.+ ||...+.+++ -.+++|.+ .+
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P--~~LSGGEkQRVAIGRALLt--~P~LLLmDEPLaSLD~~RK~Eil-pylERL~~e~~ 179 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYP--GTLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKREIL-PYLERLRDEIN 179 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCC--CccCcchhhHHHHHHHHhc--CCCeeeecCchhhcccchhhHHH-HHHHHHHHhcC
Confidence 778889999998743322 134444 34999999999 999999999998 9999999999 89999986 48
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecccccccc
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~ 179 (236)
..|+.|. |.+.+..+.++.++++..|+++...|.-.|++..|+..
T Consensus 180 IPIlYVS----HS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~p 224 (352)
T COG4148 180 IPILYVS----HSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPP 224 (352)
T ss_pred CCEEEEe----cCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcccCc
Confidence 8888774 99999999999999999999999999988888887753
No 228
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.1e-23 Score=178.00 Aligned_cols=146 Identities=16% Similarity=0.235 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-CC-----cCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14270 31 KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPR 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHH
Confidence 57899999999999999999999875 78999999977531 12333 22 135555543
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+. .........++++++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~- 187 (251)
T PRK14270 111 IHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV--KPDVILMDEPTSALDPISTLKIE- 187 (251)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2345666666321 000111234555543 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++.+ +.+++++. |...+...+++.++.
T Consensus 188 ~~L~~~~~-~~tiiivs----H~~~~~~~~~d~v~~ 218 (251)
T PRK14270 188 DLMVELKK-EYTIVIVT----HNMQQASRVSDYTAF 218 (251)
T ss_pred HHHHHHHh-CCeEEEEE----cCHHHHHHhcCEEEE
Confidence 89998866 56776664 777766666654333
No 229
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.8e-23 Score=177.02 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC---CCCceEEEeccCCCC-------CCCCC-CCc-----CCHHHhhh--------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS-------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~---~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~-------- 58 (236)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| +++ .++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~ 108 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGM 108 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCc
Confidence 5789999999999999999999974 689999999977532 22333 221 25555542
Q ss_pred ----------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
+.++++.+++.+.. ........++++.+ ++||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~-~~l 185 (246)
T PRK14269 109 IKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI--KPKLLLLDEPTSALDPISSGVIE-ELL 185 (246)
T ss_pred ccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 33567777885310 00011234555544 999999999 999999999999 9999999999 888
Q ss_pred HHHHhCCCcEEEEEecccccccchhhHhh
Q 026589 124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (236)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~~ 152 (236)
+++.+ +.+++++. |...+...+++
T Consensus 186 ~~~~~-~~tiii~t----H~~~~~~~~~d 209 (246)
T PRK14269 186 KELSH-NLSMIMVT----HNMQQGKRVAD 209 (246)
T ss_pred HHHhC-CCEEEEEe----cCHHHHHhhCc
Confidence 88864 77887774 77776666665
No 230
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=5.6e-23 Score=168.03 Aligned_cols=111 Identities=17% Similarity=0.224 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-CCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++ .| ++... +
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-----~~~~q~~~----------------------------L 72 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP-----VYKPQYID----------------------------L 72 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE-----EEEcccCC----------------------------C
Confidence 57899999999999999999999999999999988542 23 22111 3
Q ss_pred hhcH--HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC-CcEEEEEecccccccchhhHhhh
Q 026589 82 EDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN-FNVCAVYLLDSQFITDVTKFISG 153 (236)
Q Consensus 82 ~~~~--s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~-~~ii~v~l~d~~~~~d~~~~~~~ 153 (236)
++++ ++.+|++++. +|+++++||||+ ||+.++..+. ++++++++++ .+++++. |.......+++.
T Consensus 73 SgGq~qrv~laral~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~~~~tiiivs----H~~~~~~~~~d~ 141 (177)
T cd03222 73 SGGELQRVAIAAALLR--NATFYLFDEPSAYLDIEQRLNAA-RAIRRLSEEGKKTALVVE----HDLAVLDYLSDR 141 (177)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEEE----CCHHHHHHhCCE
Confidence 3333 3999999999 999999999999 9999999999 8888887654 7887774 777666666653
No 231
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.3e-23 Score=177.65 Aligned_cols=146 Identities=17% Similarity=0.238 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-CC-----cCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 109 (250)
T PRK14262 30 QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHH
Confidence 47899999999999999999999874 89999999976531 22333 22 135555543
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+.. ........++++++ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~--~p~llllDEP~~~LD~~~~~~l~- 186 (250)
T PRK14262 110 IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV--EPEVILLDEPTSALDPIATQRIE- 186 (250)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-
Confidence 23345556664310 00111234555543 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++++ +.++++++ |...+...+++.+++
T Consensus 187 ~~l~~~~~-~~tili~s----H~~~~~~~~~d~i~~ 217 (250)
T PRK14262 187 KLLEELSE-NYTIVIVT----HNIGQAIRIADYIAF 217 (250)
T ss_pred HHHHHHhc-CcEEEEEe----CCHHHHHHhCCEEEE
Confidence 99998865 67777664 777666666654333
No 232
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.7e-23 Score=180.11 Aligned_cols=144 Identities=17% Similarity=0.253 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 127 (268)
T PRK14248 48 AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALK 127 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 4789999999999999999999864 689999999876531 12333 221 25555443
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++... .........++++++ +.||++++. +|+++||||||+ ||+.++..+.
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 204 (268)
T PRK14248 128 YAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM--KPAVLLLDEPASALDPISNAKIE- 204 (268)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC--CCCEEEEcCCCcccCHHHHHHHH-
Confidence 2334455555321 001111234555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++++ +.+++++. |.......+++.+
T Consensus 205 ~~l~~~~~-~~tiii~t----H~~~~~~~~~d~v 233 (268)
T PRK14248 205 ELITELKE-EYSIIIVT----HNMQQALRVSDRT 233 (268)
T ss_pred HHHHHHhc-CCEEEEEE----eCHHHHHHhCCEE
Confidence 99999865 56776664 7777666666533
No 233
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.89 E-value=4.1e-23 Score=174.42 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCc-----CCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~----------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| +++ .++++++.
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~ 120 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECV 120 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHH
Confidence 4789999999999999999999999999999999876421 12233 221 24444432
Q ss_pred --------HHHHHHHh--CCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 --------LEDVMEEL--GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 --------~~~~l~~~--~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+ |+.+..... ...++++.+ ++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 121 ~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 195 (226)
T cd03248 121 KEAAQKAHAHSFISELASGYDTEVGEK--GSQLSGGQKQRVAIARALIR--NPQVLILDEATSALDAESEQQVQ-QALYD 195 (226)
T ss_pred HHHHHHcCcHHHHHhccccccchhhcC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 23445555 454322111 234555544 999999999 999999999999 9999999999 88888
Q ss_pred HHhCCCcEEEEEecccccccch
Q 026589 126 LKSRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~ 147 (236)
+++ +.+++++. |.....
T Consensus 196 ~~~-~~tii~~s----h~~~~~ 212 (226)
T cd03248 196 WPE-RRTVLVIA----HRLSTV 212 (226)
T ss_pred HcC-CCEEEEEE----CCHHHH
Confidence 865 57777664 665544
No 234
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=2.2e-23 Score=196.58 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-CC--------cCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-PV--------AMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~~~~~-~~--------~~~i~~~i~----- 58 (236)
-+++|+||||||||||+++|+|+++ ++|+|+++|.++.. ..++| +| ..++.+++.
T Consensus 313 e~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~ 391 (529)
T PRK15134 313 ETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV 391 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence 4789999999999999999999985 89999999876421 22344 22 235555432
Q ss_pred -------------HHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 59 -------------LEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 59 -------------~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
+.++++.+++.+ .... ....+++|++ ++||++++. +|+++|+||||+ ||+.++..++ +
T Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~ 466 (529)
T PRK15134 392 HQPTLSAAQREQQVIAVMEEVGLDPETRHR--YPAEFSGGQRQRIAIARALIL--KPSLIILDEPTSSLDKTVQAQIL-A 466 (529)
T ss_pred ccccCChHHHHHHHHHHHHHcCCCHHHHhc--CCccCCHHHHHHHHHHHHHhC--CCCEEEeeCCccccCHHHHHHHH-H
Confidence 345677788853 2111 1245666654 999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhC-CCcEEEEEecccccccchhhHhhhhHHHH
Q 026589 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASL 158 (236)
Q Consensus 122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~ 158 (236)
++++++++ |.+|++++ |.+.....+++.+++..
T Consensus 467 ~l~~~~~~~~~tvi~vs----Hd~~~~~~~~d~i~~l~ 500 (529)
T PRK15134 467 LLKSLQQKHQLAYLFIS----HDLHVVRALCHQVIVLR 500 (529)
T ss_pred HHHHHHHhhCCEEEEEe----CCHHHHHHhcCeEEEEE
Confidence 99998764 88888775 88877777776444433
No 235
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5e-23 Score=167.12 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCcCCHHHhhhHHHHHHHhCCCCCCch
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGL 74 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~ 74 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| +++..+.+. ++.+.+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~-t~~e~l----------- 96 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSG-TIRENI----------- 96 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccc-hHHHHh-----------
Confidence 5789999999999999999999999999999999976532 12233 222111110 121111
Q ss_pred hhhHHhhhhcH--HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHh
Q 026589 75 IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (236)
Q Consensus 75 ~~~~~~~~~~~--s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (236)
++++. ++.||++++. +|+++|+||||+ ||+.++..+. ++++++++ +.+++++. |...+... +
T Consensus 97 ------LS~G~~~rl~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tii~~s----h~~~~~~~-~ 161 (171)
T cd03228 97 ------LSGGQRQRIAIARALLR--DPPILILDEATSALDPETEALIL-EALRALAK-GKTVIVIA----HRLSTIRD-A 161 (171)
T ss_pred ------hCHHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC-CCEEEEEe----cCHHHHHh-C
Confidence 33333 3899999999 999999999999 9999999999 88888854 67776664 66554433 4
Q ss_pred h
Q 026589 152 S 152 (236)
Q Consensus 152 ~ 152 (236)
+
T Consensus 162 d 162 (171)
T cd03228 162 D 162 (171)
T ss_pred C
Confidence 4
No 236
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.3e-23 Score=177.77 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CC---CCceEEEeccCCC---------CCCCCC-CC-----cCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHC--ET---VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l--~~---~~G~i~i~~~d~~---------~~~~~~-~~-----~~~i~~~i~---- 58 (236)
.+++|+||||||||||+++|+|+. +| ++|+|.++|.++. ...++| ++ ..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 111 (252)
T PRK14239 32 EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLR 111 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHH
Confidence 478999999999999999999985 46 4899999987652 112333 22 135666553
Q ss_pred -------------HHHHHHHhCCCCCC-c-hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~-~-~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+.. . .......++++.+ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 188 (252)
T PRK14239 112 LKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT--SPKIILLDEPTSALDPISAGKIE- 188 (252)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-
Confidence 22244455553210 0 0011123555543 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++++ +.+++++. |...+...+++.+
T Consensus 189 ~~l~~~~~-~~tii~~s----H~~~~~~~~~d~i 217 (252)
T PRK14239 189 ETLLGLKD-DYTMLLVT----RSMQQASRISDRT 217 (252)
T ss_pred HHHHHHhh-CCeEEEEE----CCHHHHHHhCCEE
Confidence 99999865 57777664 8777666766533
No 237
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.3e-22 Score=165.41 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=108.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCCCCcCCHHHhhh----------------
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS---------------- 58 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------~~~~~~~~~~i~~~i~---------------- 58 (236)
.++++||+|||||||+++++|+.+|..|+|.++|..+.. ++-+..|..++.|++.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~ 112 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI 112 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence 578999999999999999999999999999999986521 3334455667777775
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH-HHhCCCcEE
Q 026589 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH-LKSRNFNVC 134 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~-l~~~~~~ii 134 (236)
+.+.+..+||+....... -.++++++ +-|||||+. +|++|++|||+. ||..+++.+- .++-+ +++.|+.++
T Consensus 113 a~q~l~~VgL~~~~~~~i--~qLSGGmrQRvGiARALa~--eP~~LlLDEPfgAlDa~tRe~mQ-elLldlw~~tgk~~l 187 (259)
T COG4525 113 AHQMLALVGLEGAEHKYI--WQLSGGMRQRVGIARALAV--EPQLLLLDEPFGALDALTREQMQ-ELLLDLWQETGKQVL 187 (259)
T ss_pred HHHHHHHhCcccccccce--EeecchHHHHHHHHHHhhc--CcceEeecCchhhHHHHHHHHHH-HHHHHHHHHhCCeEE
Confidence 677888999987653332 24677765 999999999 999999999998 9999999988 55555 555788888
Q ss_pred EEEecccccccchhh
Q 026589 135 AVYLLDSQFITDVTK 149 (236)
Q Consensus 135 ~v~l~d~~~~~d~~~ 149 (236)
+|+ |.+.+..-
T Consensus 188 liT----H~ieEAlf 198 (259)
T COG4525 188 LIT----HDIEEALF 198 (259)
T ss_pred EEe----ccHHHHHh
Confidence 885 77665443
No 238
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.89 E-value=3.4e-23 Score=215.94 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-CC------cCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PV------AMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-~~------~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.++| +| .++++|++.
T Consensus 1966 Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~ 2045 (2272)
T TIGR01257 1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAE 2045 (2272)
T ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHH
Confidence 5799999999999999999999999999999999987632 23444 32 457777653
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
++++++.++|.+..... ...+++|++ +.+|+|++. +|++++|||||+ ||+.+++.++ +++++++++|
T Consensus 2046 ~~~~~v~~lLe~lgL~~~~dk~--~~~LSGGqKqRLslA~ALi~--~P~VLLLDEPTsGLDp~sr~~l~-~lL~~l~~~g 2120 (2272)
T TIGR01257 2046 EIEKVANWSIQSLGLSLYADRL--AGTYSGGNKRKLSTAIALIG--CPPLVLLDEPTTGMDPQARRMLW-NTIVSIIREG 2120 (2272)
T ss_pred HHHHHHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCC
Confidence 34567788887543222 345666654 899999999 999999999999 9999999999 9999987778
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
++|++++ |.+.+...+|+++.+...|.+....+
T Consensus 2121 ~TIILtT----H~mee~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2121 RAVVLTS----HSMEECEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred CEEEEEe----CCHHHHHHhCCEEEEEECCEEEEECC
Confidence 8887774 99999999998887777666544433
No 239
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.89 E-value=4.2e-23 Score=176.57 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCCC--------CCCCC-CCcC------CHHHh-------h-
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-PVAM------DIREL-------I- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l--~~~~G~i~i~~~d~~~--------~~~~~-~~~~------~i~~~-------i- 57 (236)
.+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..+.| +++. +...+ +
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 107 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 107 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhh
Confidence 478999999999999999999995 6999999999976531 12333 2211 11000 0
Q ss_pred ---------------hHHHHHHHhCCCCC-CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 58 ---------------SLEDVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 58 ---------------~~~~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
.++++++.+++.+. .... ....++++++ ++||++++. +|+++|+||||+ ||+.++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~LS~G~~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l 184 (248)
T PRK09580 108 SYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRS-VNVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKIV 184 (248)
T ss_pred cccccccchHHHHHHHHHHHHHHcCCChhhcccC-CCCCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHH
Confidence 03345556666321 1111 0013555544 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhH
Q 026589 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (236)
. ++++++++.+.++++++ |.......+
T Consensus 185 ~-~~l~~l~~~~~tiii~s----H~~~~~~~~ 211 (248)
T PRK09580 185 A-DGVNSLRDGKRSFIIVT----HYQRILDYI 211 (248)
T ss_pred H-HHHHHHHhCCCEEEEEe----CCHHHHHhh
Confidence 9 89999877778887774 665544443
No 240
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.88 E-value=4.2e-23 Score=171.65 Aligned_cols=133 Identities=15% Similarity=0.143 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCC--------CCCCC-CCcCCHHHhhhHHHHHHHhCCCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PVAMDIRELISLEDVMEELGLGPN 71 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~--l~~~~G~i~i~~~d~~~--------~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~ 71 (236)
-+++|+||||||||||+++|+|+ ++|++|+|.++|.++.. ..+.| +++.......++.+.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~----- 101 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV----- 101 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc-----
Confidence 47899999999999999999999 57999999999987642 12444 3332222222333333211
Q ss_pred CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchh
Q 026589 72 GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT 148 (236)
Q Consensus 72 ~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~ 148 (236)
...++++++ +.||++++. +|+++|+||||+ ||+.++..+. ++++++++++.+++++. |....+.
T Consensus 102 ------~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~tiii~s----h~~~~~~ 168 (200)
T cd03217 102 ------NEGFSGGEKKRNEILQLLLL--EPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKSVLIIT----HYQRLLD 168 (200)
T ss_pred ------cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEe----cCHHHHH
Confidence 013445443 999999999 999999999999 9999999999 88988876678887774 7766555
Q ss_pred h-Hhhh
Q 026589 149 K-FISG 153 (236)
Q Consensus 149 ~-~~~~ 153 (236)
. +++.
T Consensus 169 ~~~~d~ 174 (200)
T cd03217 169 YIKPDR 174 (200)
T ss_pred HhhCCE
Confidence 5 4543
No 241
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.3e-23 Score=177.02 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
.+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 40 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 119 (269)
T PRK14259 40 KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGAR 119 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhh
Confidence 5789999999999999999999987 589999999876421 22344 221 25665543
Q ss_pred -----------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 -----------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 -----------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+.++++.+++... .........++++++ ++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~ 196 (269)
T PRK14259 120 INGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI--EPEVILMDEPCSALDPISTLKIE-ET 196 (269)
T ss_pred hcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HH
Confidence 2334566665321 001111234555544 999999999 999999999999 9999999999 89
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++ +.+++++. |...+...+++.++.
T Consensus 197 l~~~~~-~~tiiivt----H~~~~~~~~~d~i~~ 225 (269)
T PRK14259 197 MHELKK-NFTIVIVT----HNMQQAVRVSDMTAF 225 (269)
T ss_pred HHHHhc-CCEEEEEe----CCHHHHHHhcCEEEE
Confidence 999854 67777664 877777777754333
No 242
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.7e-23 Score=174.51 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++. +
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~ 107 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEV 107 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHH
Confidence 5789999999999999999999999999999999876531 12222 11 235555543 1
Q ss_pred HHHHHHhCCCCC------C---chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGPN------G---GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~~------~---~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.+.++..++... + ........++++.+ ++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 108 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 184 (236)
T cd03253 108 IEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK--NPPILLLDEATSALDTHTEREIQ-AALRDVS 184 (236)
T ss_pred HHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence 222222232110 0 00001123555543 999999999 999999999999 9999999999 8888887
Q ss_pred hCCCcEEEEEecccccccch
Q 026589 128 SRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~ 147 (236)
+ |.+++++. |.....
T Consensus 185 ~-~~tiii~s----h~~~~~ 199 (236)
T cd03253 185 K-GRTTIVIA----HRLSTI 199 (236)
T ss_pred C-CCEEEEEc----CCHHHH
Confidence 6 88887764 665543
No 243
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.8e-23 Score=178.60 Aligned_cols=144 Identities=22% Similarity=0.259 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...++| +++ .++++++.
T Consensus 47 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 126 (267)
T PRK14237 47 KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALE 126 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHH
Confidence 4789999999999999999999986 58999999997653 122344 221 35666553
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+.. ........++++.+ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 203 (267)
T PRK14237 127 RAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV--KPDILLMDEPASALDPISTMQLE- 203 (267)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 22345566664210 00011233555543 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++++ +.+++++. |...+...+|+.+
T Consensus 204 ~~l~~~~~-~~tiii~t----H~~~~~~~~~d~i 232 (267)
T PRK14237 204 ETMFELKK-NYTIIIVT----HNMQQAARASDYT 232 (267)
T ss_pred HHHHHHhc-CCEEEEEe----cCHHHHHHhcCEE
Confidence 99999854 67777664 7777666776533
No 244
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.5e-23 Score=177.74 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-CC-----cCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| ++ ..++.+++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 114 (261)
T PRK14263 35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLR 114 (261)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHHHh
Confidence 57999999999999999999999986 79999999977531 12333 22 345666553
Q ss_pred -----------HHHHHHHhCCCCCCch--hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 -----------LEDVMEELGLGPNGGL--IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 -----------~~~~l~~~~l~~~~~~--~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+.++++.+++.+.... ......++++.+ +.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPtsgLD~~~~~~l~-~~ 191 (261)
T PRK14263 115 LNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT--EPEVLLLDEPCSALDPIATRRVE-EL 191 (261)
T ss_pred hcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 3456777777542111 011233555544 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++ +.+++++. |...+...+++.+
T Consensus 192 l~~~~~-~~tii~is----H~~~~i~~~~d~v 218 (261)
T PRK14263 192 MVELKK-DYTIALVT----HNMQQAIRVADTT 218 (261)
T ss_pred HHHHhc-CCeEEEEe----CCHHHHHHhCCEE
Confidence 999854 67776664 8777777777533
No 245
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.88 E-value=1.1e-22 Score=170.78 Aligned_cols=140 Identities=9% Similarity=-0.101 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE-EeccCCCC-CCCCCCCcCCHHHhhhH------------H-HHHHHhC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVNLDPAA-ENFDYPVAMDIRELISL------------E-DVMEELG 67 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~-i~~~d~~~-~~~~~~~~~~i~~~i~~------------~-~~l~~~~ 67 (236)
.+++|+||||||||||+++|+|+++|++|+|. ++|..... ....+++..++++++.. . .+.+..+
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~ 93 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQ 93 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 57899999999999999999999999999997 66643211 12223556677777641 1 1123334
Q ss_pred CCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccc
Q 026589 68 LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (236)
Q Consensus 68 l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~ 144 (236)
++.... .....++++++ ++||++++. +|+++|+|||++ +|+.++..+. +.+.+..+ +.+++++ +|..
T Consensus 94 l~~~~~--~~~~~lS~G~~qrv~la~al~~--~p~llllDEP~~~lD~~~~~~~~-~~l~~~~~-~~~ii~v----sH~~ 163 (213)
T PRK15177 94 LEQCYT--DRVSEYSVTMKTHLAFAINLLL--PCRLYIADGKLYTGDNATQLRMQ-AALACQLQ-QKGLIVL----THNP 163 (213)
T ss_pred hhHHhh--chHhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHHHhh-CCcEEEE----ECCH
Confidence 443211 12234555544 899999999 999999999998 9999999888 65543323 3466655 4887
Q ss_pred cchhhHhh
Q 026589 145 TDVTKFIS 152 (236)
Q Consensus 145 ~d~~~~~~ 152 (236)
.....+++
T Consensus 164 ~~~~~~~d 171 (213)
T PRK15177 164 RLIKEHCH 171 (213)
T ss_pred HHHHHhcC
Confidence 76666664
No 246
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.6e-23 Score=174.93 Aligned_cols=144 Identities=20% Similarity=0.277 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.++. ...++| +|+ .++.+++.
T Consensus 32 e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~ 111 (251)
T PRK14244 32 EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK 111 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHHHH
Confidence 4789999999999999999999986 47999999986542 112333 221 14544432
Q ss_pred --------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 026589 59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (236)
Q Consensus 59 --------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~ 119 (236)
+.++++.+++.+.. ........++++.+ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~ 189 (251)
T PRK14244 112 LHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV--KPTMLLMDEPCSALDPVATNVIE 189 (251)
T ss_pred hcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 33567777875411 00111234555544 999999999 999999999999 9999999998
Q ss_pred HHHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++++ +.+++++. |...+...+++.+
T Consensus 190 -~~l~~~~~-~~tiiiis----H~~~~~~~~~d~i 218 (251)
T PRK14244 190 -NLIQELKK-NFTIIVVT----HSMKQAKKVSDRV 218 (251)
T ss_pred -HHHHHHhc-CCeEEEEe----CCHHHHHhhcCEE
Confidence 89988854 78887774 7777666666533
No 247
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=2.1e-22 Score=173.70 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE-----------EeccCCCC-------C--CCCC-CCc-----CC----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------E--NFDY-PVA-----MD---- 52 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~-----------i~~~d~~~-------~--~~~~-~~~-----~~---- 52 (236)
-+++|+||||||||||+++|+|+++|++|+|. ++|.+... . .+.| ++. .+
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 106 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGK 106 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHH
Confidence 47899999999999999999999999999996 66665421 0 1112 111 01
Q ss_pred HHHhh-------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 53 IRELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 53 i~~~i-------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+.+++ .+.++++.+|+.+..... ...++++.+ +.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 107 i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPts~LD~~~~~~l~-~~ 181 (255)
T cd03236 107 VGELLKKKDERGKLDELVDQLELRHVLDRN--IDQLSGGELQRVAIAAALAR--DADFYFFDEPSSYLDIKQRLNAA-RL 181 (255)
T ss_pred HHHHhchhHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HH
Confidence 11111 267788899987532221 234555544 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++++.+++++. |.......+++.++.
T Consensus 182 l~~l~~~~~tIIiiS----Hd~~~~~~~ad~i~~ 211 (255)
T cd03236 182 IRELAEDDNYVLVVE----HDLAVLDYLSDYIHC 211 (255)
T ss_pred HHHHHhcCCEEEEEE----CCHHHHHHhCCEEEE
Confidence 999977788887774 777666666654443
No 248
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.88 E-value=5.9e-23 Score=193.29 Aligned_cols=150 Identities=13% Similarity=0.051 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEe-----------------------ccCC-------C---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIV-----------------------NLDP-------A--------- 41 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l--~~~~G~i~i~-----------------------~~d~-------~--------- 41 (236)
-+++|+||||||||||+++|+|++ +|++|+|.+. |.++ .
T Consensus 27 e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 106 (520)
T TIGR03269 27 EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRR 106 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHH
Confidence 578999999999999999999997 7999999986 2111 0
Q ss_pred -CCCCCC-C-------CcCCHHHhhh----------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHh
Q 026589 42 -AENFDY-P-------VAMDIRELIS----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELD 94 (236)
Q Consensus 42 -~~~~~~-~-------~~~~i~~~i~----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~ 94 (236)
...++| + +..++++++. +.++++.+|+...... ....+++|++ ++||++++
T Consensus 107 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~LSgGq~qrv~iA~al~ 184 (520)
T TIGR03269 107 IRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITH--IARDLSGGEKQRVVLARQLA 184 (520)
T ss_pred hhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc--CcccCCHHHHHHHHHHHHHh
Confidence 112232 2 2235555542 4567888888654222 1345667654 99999999
Q ss_pred cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 95 NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 95 ~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
. +|++|||||||+ ||+.++..++ ++++++.+ .|.+|+++. |.......+|+.++....+.
T Consensus 185 ~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviivt----Hd~~~~~~~~d~i~~l~~G~ 246 (520)
T TIGR03269 185 K--EPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLTS----HWPEVIEDLSDKAIWLENGE 246 (520)
T ss_pred c--CCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEe----CCHHHHHHhcCEEEEEeCCE
Confidence 9 999999999999 9999999999 99999865 588887774 76666666666555544433
No 249
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8.4e-23 Score=191.01 Aligned_cols=147 Identities=13% Similarity=0.175 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CC---------cCCHHHh-----h--
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV---------AMDIREL-----I-- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~---------~~~i~~~-----i-- 57 (236)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..++| ++ +.++.++ +
T Consensus 275 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 354 (491)
T PRK10982 275 EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN 354 (491)
T ss_pred cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh
Confidence 5799999999999999999999999999999999876532 11333 21 1232221 1
Q ss_pred ---------------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 026589 58 ---------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (236)
Q Consensus 58 ---------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~ 119 (236)
.+.++++.+++..... ......+++|++ +.||++++. +|+++||||||+ ||+.++..++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~qrv~la~al~~--~p~illLDEPt~gLD~~~~~~~~ 431 (491)
T PRK10982 355 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGH-RTQIGSLSGGNQQKVIIGRWLLT--QPEILMLDEPTRGIDVGAKFEIY 431 (491)
T ss_pred hcccccccCcHHHHHHHHHHHHhcCccCCCc-ccccccCCcHHHHHHHHHHHHhc--CCCEEEEcCCCcccChhHHHHHH
Confidence 1355677777752211 112345666654 999999999 999999999999 9999999999
Q ss_pred HHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
++++++++.|.+|+++ +|+..+...+|+.++..
T Consensus 432 -~~l~~l~~~~~tvi~v----sHd~~~~~~~~d~v~~l 464 (491)
T PRK10982 432 -QLIAELAKKDKGIIII----SSEMPELLGITDRILVM 464 (491)
T ss_pred -HHHHHHHHCCCEEEEE----CCChHHHHhhCCEEEEE
Confidence 8999998778898877 48888888877644443
No 250
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=175.62 Aligned_cols=149 Identities=17% Similarity=0.218 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCC---------CCCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-----~G~i~i~~~d~~---------~~~~~~-~~~-----~~i~~~i~---- 58 (236)
.+++|+||||||||||+++|+|+++|+ +|+|.++|.++. ...+.| +++ .++++++.
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~ 113 (261)
T PRK14258 34 KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVK 113 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHHHH
Confidence 579999999999999999999999985 799999987642 112222 221 35555442
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.... ........++++++ ++||++++. +|+++||||||+ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~vllLDEP~~~LD~~~~~~l~- 190 (261)
T PRK14258 114 IVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV--KPKVLLMDEPCFGLDPIASMKVE- 190 (261)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 23455566664210 01111234555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHH
Q 026589 121 NFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (236)
Q Consensus 121 ~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~ 158 (236)
++++++++ .+.++++++ |...+...+++.+++..
T Consensus 191 ~~l~~l~~~~~~tiiivs----H~~~~i~~~~d~i~~l~ 225 (261)
T PRK14258 191 SLIQSLRLRSELTMVIVS----HNLHQVSRLSDFTAFFK 225 (261)
T ss_pred HHHHHHHHhCCCEEEEEE----CCHHHHHHhcCEEEEEc
Confidence 88888864 588887775 88887777776444443
No 251
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.88 E-value=3.7e-23 Score=168.87 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-CCc-----CCHHHhhhHHHHHHHhCCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PVA-----MDIRELISLEDVMEELGLGP 70 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-~~~-----~~i~~~i~~~~~l~~~~l~~ 70 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| +++ .++++++ +
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i------------~ 96 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL------------G 96 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh------------c
Confidence 5789999999999999999999999999999999876531 22333 222 2333332 1
Q ss_pred CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccch
Q 026589 71 NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 71 ~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~ 147 (236)
..++++++ +.||++++. +|+++|+||||+ ||+.++..++ ++++++. ++.+++++. |.....
T Consensus 97 --------~~LS~G~~qrv~laral~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~s----h~~~~~ 160 (178)
T cd03247 97 --------RRFSGGERQRLALARILLQ--DAPIVLLDEPTVGLDPITERQLL-SLIFEVL-KDKTLIWIT----HHLTGI 160 (178)
T ss_pred --------ccCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEEe----cCHHHH
Confidence 23444433 999999999 999999999999 9999999999 8888885 477777764 655433
No 252
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=9.9e-23 Score=171.29 Aligned_cols=139 Identities=15% Similarity=0.233 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-CC-----cCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-----AMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-~~-----~~~i~~~i~------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~ 107 (218)
T cd03290 28 QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNK 107 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhhcCcCCH
Confidence 4789999999999999999999999999999999875421 22333 22 235666553
Q ss_pred --HHHHHHHhCCCCCCc---------hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH-HH
Q 026589 59 --LEDVMEELGLGPNGG---------LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN-FV 123 (236)
Q Consensus 59 --~~~~l~~~~l~~~~~---------~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~-ll 123 (236)
..++++.+++.+... .......++++++ ++||++++. +|+++|+||||+ ||+.++..+++. ++
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~~ll 185 (218)
T cd03290 108 QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ--NTNIVFLDDPFSALDIHLSDHLMQEGIL 185 (218)
T ss_pred HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 234455555432100 0001123555543 999999999 999999999999 999999999832 77
Q ss_pred HHHHhCCCcEEEEEecccccccch
Q 026589 124 DHLKSRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~ 147 (236)
+.+++.|.++++++ |.....
T Consensus 186 ~~~~~~~~tii~~s----H~~~~~ 205 (218)
T cd03290 186 KFLQDDKRTLVLVT----HKLQYL 205 (218)
T ss_pred HHHhcCCCEEEEEe----CChHHH
Confidence 77766678887774 665443
No 253
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.1e-23 Score=178.83 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-CCc-----CCHHHhhhH---
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELISL--- 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~~-~~~-----~~i~~~i~~--- 59 (236)
-+++|+|+||||||||+++|+|+++ |++|+|.++|.++. ...++| +++ .++++++..
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 130 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPK 130 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHHHHHH
Confidence 5789999999999999999999987 69999999997652 122333 222 256655431
Q ss_pred --------------HHHHHHhCCCCC-C-chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 60 --------------EDVMEELGLGPN-G-GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 60 --------------~~~l~~~~l~~~-~-~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
.++++.+++... . ........++++.+ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~--~p~lllLDEPt~~LD~~~~~~l~- 207 (271)
T PRK14238 131 IHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI--EPDVILMDEPTSALDPISTLKVE- 207 (271)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-
Confidence 122223322100 0 00011223455543 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++++ +.+++++. |.......+++.+
T Consensus 208 ~~l~~~~~-~~tiiivs----H~~~~i~~~~d~i 236 (271)
T PRK14238 208 ELVQELKK-DYSIIIVT----HNMQQAARISDKT 236 (271)
T ss_pred HHHHHHHc-CCEEEEEE----cCHHHHHHhCCEE
Confidence 89999865 67777664 8777766776533
No 254
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.1e-23 Score=175.07 Aligned_cols=146 Identities=17% Similarity=0.221 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
.+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..+.| +++ .++++++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14249 31 QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPR 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhHHH
Confidence 478999999999999999999999987 6999999876531 22333 221 25555543
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
++++++.+++.+. .........++++++ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 187 (251)
T PRK14249 111 MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI--EPEVILMDEPCSALDPVSTMRIE- 187 (251)
T ss_pred hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 1223344554321 000011223555543 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++++++ ++.+++++. |...+...+++.+++
T Consensus 188 ~~l~~~~-~~~tilivs----h~~~~~~~~~d~i~~ 218 (251)
T PRK14249 188 ELMQELK-QNYTIAIVT----HNMQQAARASDWTGF 218 (251)
T ss_pred HHHHHHh-cCCEEEEEe----CCHHHHHhhCCEEEE
Confidence 8999885 577887774 887777777654333
No 255
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.88 E-value=5.5e-23 Score=198.19 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh-------HHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-------LEDV 62 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~-------~~~~ 62 (236)
-.++|+|+||||||||+|.++|+++|++|+|.++|.|.+. +.++| +| +-+++|+++ .+++
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i 579 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEI 579 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHH
Confidence 3589999999999999999999999999999999998753 45555 43 336888876 2333
Q ss_pred HHHhCCCCCCchh------------hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 63 MEELGLGPNGGLI------------YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 63 l~~~~l~~~~~~~------------~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
++...+......+ ..-..+++|++ ++|||++.. +|++|||||||+ ||..+.+.+. +-+.++.
T Consensus 580 ~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~--~P~ILlLDEaTSaLD~~sE~~I~-~~L~~~~ 656 (709)
T COG2274 580 IEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS--KPKILLLDEATSALDPETEAIIL-QNLLQIL 656 (709)
T ss_pred HHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc--CCCEEEEeCcccccCHhHHHHHH-HHHHHHh
Confidence 3322211100000 00012566655 999999999 999999999999 9999999999 7777764
Q ss_pred hCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeee
Q 026589 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~ 170 (236)
.|+|+|++. |... ..+.++++++...|++..+.+|-+
T Consensus 657 -~~~T~I~Ia----HRl~-ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 657 -QGRTVIIIA----HRLS-TIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred -cCCeEEEEE----ccch-HhhhccEEEEccCCceeccCCHHH
Confidence 467777774 6654 344566666666666666666533
No 256
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=6.6e-23 Score=172.50 Aligned_cols=137 Identities=20% Similarity=0.201 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh---------HH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~ 60 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++. +.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~ 110 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELW 110 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHH
Confidence 4789999999999999999999999999999999876421 22333 22 225666553 34
Q ss_pred HHHHHhCCCCCCch---------hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 61 DVMEELGLGPNGGL---------IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 61 ~~l~~~~l~~~~~~---------~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
+.++.+++.+.... ......++++++ +.||++++. +|+++|+|||++ ||+.++..+. ++++++++
T Consensus 111 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~ 187 (221)
T cd03244 111 QALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREAFK 187 (221)
T ss_pred HHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhcC
Confidence 45555555421100 001123555443 999999999 999999999999 9999999999 88888854
Q ss_pred CCCcEEEEEecccccccch
Q 026589 129 RNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~ 147 (236)
+.+++++. |...+.
T Consensus 188 -~~tii~~s----h~~~~~ 201 (221)
T cd03244 188 -DCTVLTIA----HRLDTI 201 (221)
T ss_pred -CCEEEEEe----CCHHHH
Confidence 56776664 665443
No 257
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1.6e-22 Score=168.74 Aligned_cols=131 Identities=20% Similarity=0.233 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-------CCCCCC-CC-----cCCHHHhhh------HHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PV-----AMDIRELIS------LEDVM 63 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~-------~~~~~~-~~-----~~~i~~~i~------~~~~l 63 (236)
.+++|+||||||||||+++|+|+++|++|+|.++|.++. ...++| ++ ..++++++. .+++.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~ 114 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY 114 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHH
Confidence 478999999999999999999999999999999987642 122333 22 225666553 22333
Q ss_pred HHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecc
Q 026589 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (236)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (236)
+.+++... ...++++.. ++||++++. +|+++|+|||++ ||+.++..++ ++++++. ++.+++++.
T Consensus 115 ~~l~~~~~------~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tiii~t--- 181 (207)
T cd03369 115 GALRVSEG------GLNLSQGQRQLLCLARALLK--RPRVLVLDEATASIDYATDALIQ-KTIREEF-TNSTILTIA--- 181 (207)
T ss_pred HHhhccCC------CCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-CCCEEEEEe---
Confidence 33443222 133555443 999999999 999999999999 9999999999 8888874 477887764
Q ss_pred cccccch
Q 026589 141 SQFITDV 147 (236)
Q Consensus 141 ~~~~~d~ 147 (236)
|.....
T Consensus 182 -h~~~~~ 187 (207)
T cd03369 182 -HRLRTI 187 (207)
T ss_pred -CCHHHH
Confidence 665543
No 258
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=174.50 Aligned_cols=144 Identities=17% Similarity=0.275 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|++++ ++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~ 109 (250)
T PRK14240 30 QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 47899999999999999999999763 68999999976531 12333 221 35555543
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+.. ........++++++ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~- 186 (250)
T PRK14240 110 THGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV--EPEVLLMDEPTSALDPISTLKIE- 186 (250)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 22234445543100 00011123555543 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++++ +.+++++. |...+...+++.+
T Consensus 187 ~~l~~~~~-~~tiii~s----H~~~~~~~~~d~v 215 (250)
T PRK14240 187 ELIQELKK-DYTIVIVT----HNMQQASRISDKT 215 (250)
T ss_pred HHHHHHhc-CCeEEEEE----eCHHHHHhhCCEE
Confidence 89999854 77877764 7776666666533
No 259
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.6e-22 Score=173.41 Aligned_cols=146 Identities=15% Similarity=0.193 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCCC---------CCCCC-C------CcCCHHHhhhH--
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-P------VAMDIRELISL-- 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~~-~------~~~~i~~~i~~-- 59 (236)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..+.| + +..++.+++..
T Consensus 31 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~ 110 (252)
T PRK14272 31 TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGL 110 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHH
Confidence 478999999999999999999999874 8999999976531 12333 2 23466665531
Q ss_pred ---------------HHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 026589 60 ---------------EDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (236)
Q Consensus 60 ---------------~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~ 119 (236)
.++++.+++... .........++++++ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~ 188 (252)
T PRK14272 111 KLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV--EPEILLMDEPTSALDPASTARIE 188 (252)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 111223333210 000111234555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++++ +.+++++. |.......+++.++.
T Consensus 189 -~~l~~~~~-~~tiii~s----H~~~~~~~~~d~i~~ 219 (252)
T PRK14272 189 -DLMTDLKK-VTTIIIVT----HNMHQAARVSDTTSF 219 (252)
T ss_pred -HHHHHHhc-CCeEEEEe----CCHHHHHHhCCEEEE
Confidence 89999864 67777664 777766666653333
No 260
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.7e-22 Score=176.89 Aligned_cols=147 Identities=17% Similarity=0.244 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~~-~~~-----~~i~~~i~---- 58 (236)
.+++|+||||||||||+++|+|+.+ |++|+|.++|.++. ...++| +++ .++.+++.
T Consensus 66 e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 145 (286)
T PRK14275 66 YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPR 145 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHH
Confidence 5789999999999999999999864 49999999987642 122334 221 25555543
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++... .........+++|++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~gLD~~~~~~l~- 222 (286)
T PRK14275 146 LHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV--EPEILLLDEPTSALDPKATAKIE- 222 (286)
T ss_pred hcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 2234555565311 001111234555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
++++++++ +.+|+++. |.......+++.+++.
T Consensus 223 ~~L~~~~~-~~tvIivs----H~~~~~~~~~d~i~~L 254 (286)
T PRK14275 223 DLIQELRG-SYTIMIVT----HNMQQASRVSDYTMFF 254 (286)
T ss_pred HHHHHHhc-CCeEEEEe----CCHHHHHHhCCEEEEE
Confidence 89998865 56776664 8877766777544433
No 261
>PLN03211 ABC transporter G-25; Provisional
Probab=99.88 E-value=2.1e-22 Score=194.00 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=118.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC--CceEEEeccCCCC---CCCCC-------CCcCCHHHhhh------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~--~G~i~i~~~d~~~---~~~~~-------~~~~~i~~~i~------------ 58 (236)
.+++|+||||||||||+++|+|..+|. +|+|.++|.++.. ..++| .+..+++|++.
T Consensus 95 e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~ 174 (659)
T PLN03211 95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLT 174 (659)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCC
Confidence 578999999999999999999999885 8999999987532 22333 23456776653
Q ss_pred -------HHHHHHHhCCCCCCchhh---hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 -------LEDVMEELGLGPNGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
++++++.+||.+...... ....+++|.+ ++||++++. +|+++++||||+ ||..++..++ +++++
T Consensus 175 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~--~P~iLlLDEPtsgLD~~~~~~l~-~~L~~ 251 (659)
T PLN03211 175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSGLDATAAYRLV-LTLGS 251 (659)
T ss_pred HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh--CCCEEEEeCCCCCcCHHHHHHHH-HHHHH
Confidence 455777888865321100 0123555544 999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCcEEEEEeccccccc-chhhHhhhhHHHHHHHHhhCCCe
Q 026589 126 LKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~-d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
++++|.|++++. |... +....++.+++...|.+....|+
T Consensus 252 l~~~g~TvI~~s----H~~~~~i~~~~D~iilL~~G~iv~~G~~ 291 (659)
T PLN03211 252 LAQKGKTIVTSM----HQPSSRVYQMFDSVLVLSEGRCLFFGKG 291 (659)
T ss_pred HHhCCCEEEEEe----cCCCHHHHHhhceEEEecCCcEEEECCH
Confidence 987788887774 7766 45677777777666666555554
No 262
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.1e-22 Score=173.70 Aligned_cols=144 Identities=20% Similarity=0.242 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec------cCCC-------CCCCCC-------CCcCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDPA-------AENFDY-------PVAMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~------~d~~-------~~~~~~-------~~~~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.+.| .++. ...+.| .+..++++++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 116 (257)
T PRK14246 37 SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLK 116 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHH
Confidence 47899999999999999999999999997776654 3332 122333 22345555443
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+.. ........++++.+ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~P~llllDEPt~~LD~~~~~~l~- 193 (257)
T PRK14246 117 SHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL--KPKVLLMDEPTSMIDIVNSQAIE- 193 (257)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 34456667775310 00111133555543 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
+++.++++ +.+++++. |.......+|+.+
T Consensus 194 ~~l~~~~~-~~tiilvs----h~~~~~~~~~d~v 222 (257)
T PRK14246 194 KLITELKN-EIAIVIVS----HNPQQVARVADYV 222 (257)
T ss_pred HHHHHHhc-CcEEEEEE----CCHHHHHHhCCEE
Confidence 88988854 57787664 7777666666533
No 263
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.6e-22 Score=171.95 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC--------CCCCC-CC-----cCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA--------ENFDY-PV-----AMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~--------~~~~~-~~-----~~~i~~~i~----- 58 (236)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| ++ ..++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~ 109 (249)
T PRK14253 30 QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRA 109 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhHHHh
Confidence 47899999999999999999999986 59999999876521 12333 22 135555543
Q ss_pred ------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 59 ------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 59 ------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
+.++++.+++.+.. ........++++.+ +.||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~ 186 (249)
T PRK14253 110 QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM--EPDVILMDEPTSALDPIATHKIE-E 186 (249)
T ss_pred cCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-H
Confidence 12234445553210 00111123444443 999999999 999999999999 9999999999 8
Q ss_pred HHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
+++++++ +.+++++. |.......+++.+++
T Consensus 187 ~l~~~~~-~~tii~~s----h~~~~~~~~~d~i~~ 216 (249)
T PRK14253 187 LMEELKK-NYTIVIVT----HSMQQARRISDRTAF 216 (249)
T ss_pred HHHHHhc-CCeEEEEe----cCHHHHHHhCCEEEE
Confidence 9999865 57777664 887777777754433
No 264
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.7e-22 Score=174.36 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
.+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| +++ .++++++.
T Consensus 52 e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 131 (272)
T PRK14236 52 RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLR 131 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 57899999999999999999999874 89999999977531 12333 221 25555543
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+. .........++++.+ ++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~- 208 (272)
T PRK14236 132 LQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI--EPEVLLLDEPTSALDPISTLKIE- 208 (272)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2334555566431 000011234555543 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
++++++++ +.+++++. |...+...+++.++..
T Consensus 209 ~~L~~~~~-~~tiiivt----H~~~~~~~~~d~i~~l 240 (272)
T PRK14236 209 ELITELKS-KYTIVIVT----HNMQQAARVSDYTAFM 240 (272)
T ss_pred HHHHHHHh-CCeEEEEe----CCHHHHHhhCCEEEEE
Confidence 99999865 67776664 7777666666544333
No 265
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.1e-22 Score=176.27 Aligned_cols=143 Identities=15% Similarity=0.251 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| +|+ .++.+++.
T Consensus 66 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 145 (285)
T PRK14254 66 QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLK 145 (285)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHH
Confidence 5789999999999999999999987 689999999876521 12333 221 25655543
Q ss_pred -----------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 -----------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 -----------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+.++++.+++.+.. ........++++++ ++||++++. +|+++|||||++ ||+.++..+. ++
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~--~p~lLLLDEPts~LD~~~~~~l~-~~ 222 (285)
T PRK14254 146 IQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP--DPEVILMDEPASALDPVATSKIE-DL 222 (285)
T ss_pred HcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HH
Confidence 34566677774311 01111234555544 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhh
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~ 153 (236)
++++++ +.+++++. |.......+++.
T Consensus 223 L~~~~~-~~tiii~t----H~~~~i~~~~dr 248 (285)
T PRK14254 223 IEELAE-EYTVVIVT----HNMQQAARISDK 248 (285)
T ss_pred HHHHhc-CCEEEEEe----CCHHHHHhhcCE
Confidence 999865 46776664 777766666654
No 266
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=1.5e-22 Score=211.24 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-------~~~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.++| .+..+++|++.
T Consensus 957 ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~ 1036 (2272)
T TIGR01257 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWE 1036 (2272)
T ss_pred cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHH
Confidence 5789999999999999999999999999999999987632 23333 23457777653
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026589 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 59 -----~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
++++++++|+....... ...+++|++ ++||+|++. +|+++||||||+ ||+.+++.++ +++++++ +|
T Consensus 1037 ~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqKQRLsLArALi~--~PkVLLLDEPTSGLDp~sr~~l~-~lL~~l~-~g 1110 (2272)
T TIGR01257 1037 EAQLEMEAMLEDTGLHHKRNEE--AQDLSGGMQRKLSVAIAFVG--DAKVVVLDEPTSGVDPYSRRSIW-DLLLKYR-SG 1110 (2272)
T ss_pred HHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh-CC
Confidence 45678888887543222 345777765 999999999 999999999999 9999999999 9999985 58
Q ss_pred CcEEEEEecccccccchhhHhhhhHHHHHHHHhhC
Q 026589 131 FNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
++|++++ |++.+...+++++++...|.+...
T Consensus 1111 ~TIIltT----Hdmdea~~laDrI~iL~~GkL~~~ 1141 (2272)
T TIGR01257 1111 RTIIMST----HHMDEADLLGDRIAIISQGRLYCS 1141 (2272)
T ss_pred CEEEEEE----CCHHHHHHhCCEEEEEECCEEEEe
Confidence 8887775 888888888888877666655433
No 267
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=1.9e-22 Score=172.31 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=113.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhh-hHHHHHHHhCCCCCCchhhhHHhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI-SLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i-~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
-+++|+|+|||||||+-|++.|+++|++|+|++.|.|...-. ..+.. .+.++++.+|+.+.-..+++. .+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------~~~~~~~v~elL~~Vgl~~~~~~ryPh-el 110 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------KEERRERVLELLEKVGLPEEFLYRYPH-EL 110 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------hhHHHHHHHHHHHHhCCCHHHhhcCCc-cc
Confidence 478999999999999999999999999999999998864322 11122 288899999988866666664 56
Q ss_pred hhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 82 ~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
+++++ +.||||++. +|+++++|||++ ||...+.++. ++++++++ .|.+.+++. |+++-+..+++++.++
T Consensus 111 SGGQrQRi~IARALal--~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt~lFIs----HDL~vv~~isdri~VM 183 (268)
T COG4608 111 SGGQRQRIGIARALAL--NPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLTYLFIS----HDLSVVRYISDRIAVM 183 (268)
T ss_pred CchhhhhHHHHHHHhh--CCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCeEEEEE----EEHHhhhhhcccEEEE
Confidence 66654 999999999 999999999999 9999999999 99999986 588888774 7777666666544443
Q ss_pred HH
Q 026589 158 LS 159 (236)
Q Consensus 158 ~~ 159 (236)
..
T Consensus 184 y~ 185 (268)
T COG4608 184 YL 185 (268)
T ss_pred ec
Confidence 33
No 268
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.2e-22 Score=175.84 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...++| +++ .++.+++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 116 (264)
T PRK14243 37 QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGAR 116 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHHHHhhhh
Confidence 5789999999999999999999976 37999999997652 112333 221 25555543
Q ss_pred -----------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 -----------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 -----------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+.++++.+++.... ........++++++ +.||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 193 (264)
T PRK14243 117 INGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV--QPEVILMDEPCSALDPISTLRIE-EL 193 (264)
T ss_pred hcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 12234444542100 00011123555543 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++ +.+++++. |...+...+++.+
T Consensus 194 L~~~~~-~~tvi~vt----H~~~~~~~~~d~v 220 (264)
T PRK14243 194 MHELKE-QYTIIIVT----HNMQQAARVSDMT 220 (264)
T ss_pred HHHHhc-CCEEEEEe----cCHHHHHHhCCEE
Confidence 999865 56777664 8877777777533
No 269
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=3.6e-22 Score=166.28 Aligned_cols=137 Identities=23% Similarity=0.226 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--CCCCCCCCcCCHHHhhh---------HHHHHHHhCCCC-
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS---------LEDVMEELGLGP- 70 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~~- 70 (236)
-+++|+||||||||||+++|+|+.+|++|+|.++| .++ .+...+. ..++++++. ..+..+.+++..
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~ 109 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-SIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPD 109 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-EEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHH
Confidence 47899999999999999999999999999999987 111 1111111 234555443 223333333211
Q ss_pred -----CCc---hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEec
Q 026589 71 -----NGG---LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (236)
Q Consensus 71 -----~~~---~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~ 139 (236)
.+. .......++++.+ ++||++++. +|+++|+|||++ ||+.+++.+++.+++++.++|.++++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~s-- 185 (204)
T cd03250 110 LEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS--DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVT-- 185 (204)
T ss_pred HHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEe--
Confidence 000 0000123444443 999999999 999999999999 9999999998336777655678887774
Q ss_pred ccccccch
Q 026589 140 DSQFITDV 147 (236)
Q Consensus 140 d~~~~~d~ 147 (236)
|.....
T Consensus 186 --h~~~~~ 191 (204)
T cd03250 186 --HQLQLL 191 (204)
T ss_pred --CCHHHH
Confidence 665433
No 270
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.3e-22 Score=172.57 Aligned_cols=146 Identities=17% Similarity=0.246 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC--C---CCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~--~---~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+.+ | ++|+|.++|.++.. ..+.| +|+ .++++++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~ 111 (252)
T PRK14255 32 EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLR 111 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHH
Confidence 4799999999999999999999875 4 58999999976521 12333 221 35555543
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.+.++.+++.... ........++++++ +.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 188 (252)
T PRK14255 112 LAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV--KPDVILLDEPTSALDPISSTQIE- 188 (252)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 12223444442110 00111233555543 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++++ +.++++++ |.......+++.++.
T Consensus 189 ~~l~~~~~-~~tii~vs----H~~~~~~~~~d~i~~ 219 (252)
T PRK14255 189 NMLLELRD-QYTIILVT----HSMHQASRISDKTAF 219 (252)
T ss_pred HHHHHHHh-CCEEEEEE----CCHHHHHHhCCEEEE
Confidence 99998865 46777764 777766666654333
No 271
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.1e-22 Score=171.95 Aligned_cols=144 Identities=16% Similarity=0.214 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+..+ ++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~ 112 (253)
T PRK14261 33 RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPR 112 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhhHH
Confidence 47899999999999999999999763 48999999876431 12333 221 24555443
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+.- ........++++.+ ++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~l~- 189 (253)
T PRK14261 113 IHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV--NPEVILMDEPCSALDPIATAKIE- 189 (253)
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 23344555553210 00111234555544 999999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++++ +.+++++. |.......+++.+
T Consensus 190 ~~l~~~~~-~~tvii~s----h~~~~~~~~~d~v 218 (253)
T PRK14261 190 DLIEDLKK-EYTVIIVT----HNMQQAARVSDYT 218 (253)
T ss_pred HHHHHHhh-CceEEEEE----cCHHHHHhhCCEE
Confidence 99999865 57777664 7777666666533
No 272
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.87 E-value=6.6e-22 Score=166.33 Aligned_cols=142 Identities=19% Similarity=0.273 Sum_probs=106.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC--------CCCC---------CCcCCHHH------------
Q 026589 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NFDY---------PVAMDIRE------------ 55 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~--------~~~~---------~~~~~i~~------------ 55 (236)
-+|+||||||||||+++++|...|++|.+.+.|...... .+++ +...+++|
T Consensus 60 W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~ 139 (257)
T COG1119 60 WAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI 139 (257)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccc
Confidence 479999999999999999999999999999998765431 1121 11112222
Q ss_pred ---------hhhHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 56 ---------LISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 56 ---------~i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
.-.+..+++.+|+....++.++ .++.+.+ +-||||++. +|++||||||++ ||+..+..+. +.+
T Consensus 140 y~~~~~~~~~~~a~~lle~~g~~~la~r~~~--~LS~Ge~rrvLiaRALv~--~P~LLiLDEP~~GLDl~~re~ll-~~l 214 (257)
T COG1119 140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFG--SLSQGEQRRVLIARALVK--DPELLILDEPAQGLDLIAREQLL-NRL 214 (257)
T ss_pred cccCCCHHHHHHHHHHHHHcchhhhccCchh--hcCHhHHHHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHH
Confidence 2227778899999876555543 4665544 899999999 999999999999 9999999999 888
Q ss_pred HHHHhC--CCcEEEEEecccccccchhhHhhhhH
Q 026589 124 DHLKSR--NFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 124 ~~l~~~--~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
.++... +.++++|. |+..|....++.++
T Consensus 215 ~~~~~~~~~~~ll~Vt----Hh~eEi~~~~th~l 244 (257)
T COG1119 215 EELAASPGAPALLFVT----HHAEEIPPCFTHRL 244 (257)
T ss_pred HHHhcCCCCceEEEEE----cchhhcccccceEE
Confidence 887653 67787775 88887766554333
No 273
>PRK13409 putative ATPase RIL; Provisional
Probab=99.87 E-value=5e-22 Score=189.32 Aligned_cols=145 Identities=16% Similarity=0.167 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--CCCCCCCCcCCHHHhhh-----------HHHHHHHhCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS-----------LEDVMEELGLG 69 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i~-----------~~~~l~~~~l~ 69 (236)
-+++|+||||||||||+++|+|+++|++|+|.++ ..++ .+........++++++. +.++++.+++.
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~ 444 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH
Confidence 4789999999999999999999999999999875 2211 12222223456666553 35678888886
Q ss_pred CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEeccccccc
Q 026589 70 PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 70 ~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~ 145 (236)
+.... ....+++|.+ ++||++++. +|+++||||||+ ||+.++..+. ++++++++ .|.+++++. |+..
T Consensus 445 ~~~~~--~~~~LSGGe~QRvaiAraL~~--~p~llLLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviivs----HD~~ 515 (590)
T PRK13409 445 RLLDK--NVKDLSGGELQRVAIAACLSR--DADLYLLDEPSAHLDVEQRLAVA-KAIRRIAEEREATALVVD----HDIY 515 (590)
T ss_pred HHHhC--CcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEe----CCHH
Confidence 43222 2345666654 999999999 999999999999 9999999999 99999976 478888775 8877
Q ss_pred chhhHhhhhHHH
Q 026589 146 DVTKFISGCMAS 157 (236)
Q Consensus 146 d~~~~~~~~l~~ 157 (236)
....+++++++.
T Consensus 516 ~~~~~aDrvivl 527 (590)
T PRK13409 516 MIDYISDRLMVF 527 (590)
T ss_pred HHHHhCCEEEEE
Confidence 777777655543
No 274
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4e-22 Score=173.74 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC--------CCCCC-CC-----cCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA--------ENFDY-PV-----AMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~--------~~~~~-~~-----~~~i~~~i~----- 58 (236)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 48 e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~ 127 (276)
T PRK14271 48 AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRA 127 (276)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHHHHh
Confidence 57899999999999999999999985 69999999866421 12333 22 135665543
Q ss_pred ------------HHHHHHHhCCCCCCc--hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 59 ------------LEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 59 ------------~~~~l~~~~l~~~~~--~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
+.++++.+++..... .......++++.+ ++||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 204 (276)
T PRK14271 128 HKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV--NPEVLLLDEPTSALDPTTTEKIE-E 204 (276)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 234456667653110 0111234555544 999999999 999999999999 9999999999 8
Q ss_pred HHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
+++++++ +.+++++. |.......+++.++..
T Consensus 205 ~L~~~~~-~~tiiivs----H~~~~~~~~~dri~~l 235 (276)
T PRK14271 205 FIRSLAD-RLTVIIVT----HNLAQAARISDRAALF 235 (276)
T ss_pred HHHHHhc-CCEEEEEe----CCHHHHHHhCCEEEEE
Confidence 8998865 47777774 8777666777644443
No 275
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.2e-22 Score=171.85 Aligned_cols=144 Identities=20% Similarity=0.268 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-CC-----cCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (236)
-+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 113 (259)
T PRK14260 34 KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVR 113 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHHHH
Confidence 57899999999999999999999885 48999999876521 12333 22 145655543
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++... .........++++.+ +.||++++. +|+++||||||+ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 190 (259)
T PRK14260 114 ISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI--KPKVLLMDEPCSALDPIATMKVE- 190 (259)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 2345556666321 001111234555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++++++ +.+++++. |...+...+++.+
T Consensus 191 ~~l~~~~~-~~tiii~t----H~~~~i~~~~d~i 219 (259)
T PRK14260 191 ELIHSLRS-ELTIAIVT----HNMQQATRVSDFT 219 (259)
T ss_pred HHHHHHhc-CCEEEEEe----CCHHHHHHhcCeE
Confidence 99998865 57777774 8888777777533
No 276
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.4e-22 Score=174.88 Aligned_cols=145 Identities=18% Similarity=0.183 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhhH---
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELISL--- 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~~--- 59 (236)
-+++|+||||||||||+++|+|++++ ++|+|.++|.++.. ..+.| +++ .++.+++..
T Consensus 47 e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~ 126 (274)
T PRK14265 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPR 126 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhHHH
Confidence 47899999999999999999999863 58999999976521 12333 221 255555431
Q ss_pred ------------HHHHHHhCCCCCCc--hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 60 ------------EDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 60 ------------~~~l~~~~l~~~~~--~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
.+.++.+++..... .......++++.+ +.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 127 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 203 (274)
T PRK14265 127 ANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM--KPDVLLMDEPCSALDPISTRQVE-EL 203 (274)
T ss_pred hcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 23445555531100 0011233555543 999999999 999999999999 9999999999 89
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhhhH
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
++++++ +.+++++. |.......+++.++
T Consensus 204 L~~~~~-~~tiii~s----H~~~~~~~~~d~i~ 231 (274)
T PRK14265 204 CLELKE-QYTIIMVT----HNMQQASRVADWTA 231 (274)
T ss_pred HHHHhc-CCEEEEEe----CCHHHHHHhCCEEE
Confidence 999865 67777664 88777777775333
No 277
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=4.5e-22 Score=164.43 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=121.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC--------------C--CCCCCcCCHHHhhh---------
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------------N--FDYPVAMDIRELIS--------- 58 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~--------------~--~~~~~~~~i~~~i~--------- 58 (236)
++.|||.||||||||+++++|-+.|++|+|.++|.|+.+. . .+-.+.+|+.|++.
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~r 113 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKR 113 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCccc
Confidence 5779999999999999999999999999999999987531 1 11234678888875
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
..+-++.++++-...+...+..++++++ ++++.|.+. .|++++|||=|+ |||.+...++ ++
T Consensus 114 gl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~--~pkiLLLDEHTAALDPkta~~vm-~l 190 (263)
T COG1101 114 GLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLH--PPKILLLDEHTAALDPKTAEFVM-EL 190 (263)
T ss_pred ccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcC--CCcEEEecchhhcCCcchHHHHH-HH
Confidence 3444555555532223334677888887 445555555 999999999999 9999999999 77
Q ss_pred HHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
-.++.+ .+.|.++|+ |.+.++.+|=++.++..+|.+.++..
T Consensus 191 T~kiV~~~klTtlMVT----Hnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 191 TAKIVEEHKLTTLMVT----HNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHHHHHhcCCceEEEe----ccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 777764 678888886 99999999999888888888876643
No 278
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=8e-22 Score=157.87 Aligned_cols=149 Identities=18% Similarity=0.190 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (236)
-.++|+||+|||||||+-.++|+-.|++|+|.+.|.+... .+++| -|+++..|++.
T Consensus 37 e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 4589999999999999999999999999999999987642 23333 34555555553
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
..++++.+||+....- |+ ..++++ ++++|||+++. .|++|+-||||. ||-.+-.++. +++-.
T Consensus 117 ge~~~~~~~~A~~lL~~vGLg~Rl~H-yP-~qLSGGEQQRVAiARAfa~--~P~vLfADEPTGNLD~~Tg~~ia-DLlF~ 191 (228)
T COG4181 117 GESSADSRAGAKALLEAVGLGKRLTH-YP-AQLSGGEQQRVALARAFAG--RPDVLFADEPTGNLDRATGDKIA-DLLFA 191 (228)
T ss_pred CCccccHHHHHHHHHHHhCccccccc-Cc-cccCchHHHHHHHHHHhcC--CCCEEeccCCCCCcchhHHHHHH-HHHHH
Confidence 7788999999865322 11 123333 34999999999 999999999997 9999999999 88888
Q ss_pred HHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
+++ .|.|+++|+ |+-. ....|++.+-..++.
T Consensus 192 lnre~G~TlVlVT----HD~~-LA~Rc~R~~r~~~G~ 223 (228)
T COG4181 192 LNRERGTTLVLVT----HDPQ-LAARCDRQLRLRSGR 223 (228)
T ss_pred HhhhcCceEEEEe----CCHH-HHHhhhheeeeecce
Confidence 875 689998886 4432 223355444444433
No 279
>PRK13409 putative ATPase RIL; Provisional
Probab=99.87 E-value=3.9e-22 Score=190.05 Aligned_cols=144 Identities=20% Similarity=0.219 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE-----------EeccCCCC---------CC----CCC---CCc---CC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA---------EN----FDY---PVA---MD 52 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~-----------i~~~d~~~---------~~----~~~---~~~---~~ 52 (236)
-+++|+||||||||||+|+|+|+++|+.|+|. +.|.++.. .. ..| .+. .+
T Consensus 100 ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~t 179 (590)
T PRK13409 100 KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGK 179 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcch
Confidence 57899999999999999999999999999997 77765421 11 122 111 15
Q ss_pred HHHhhh-------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 53 i~~~i~-------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+++++. ++++++.+++...... ....+++++. ++||++++. +|+++||||||+ ||+..+..+. ++
T Consensus 180 v~e~l~~~~~~~~~~~~l~~l~l~~~~~~--~~~~LSgGe~qrv~ia~al~~--~p~lllLDEPts~LD~~~~~~l~-~~ 254 (590)
T PRK13409 180 VRELLKKVDERGKLDEVVERLGLENILDR--DISELSGGELQRVAIAAALLR--DADFYFFDEPTSYLDIRQRLNVA-RL 254 (590)
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCchhhcC--ChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HH
Confidence 666553 5678889998754222 2345666654 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhhhHH
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~ 156 (236)
++++++ |.+++++. |.+.....+++.+++
T Consensus 255 i~~l~~-g~tvIivs----Hd~~~l~~~~D~v~v 283 (590)
T PRK13409 255 IRELAE-GKYVLVVE----HDLAVLDYLADNVHI 283 (590)
T ss_pred HHHHHC-CCEEEEEe----CCHHHHHHhCCEEEE
Confidence 999987 88888774 777666666655443
No 280
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.86 E-value=3.5e-22 Score=190.21 Aligned_cols=135 Identities=18% Similarity=0.139 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------- 58 (236)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-|+++++.
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 449 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQ 449 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHH
Confidence 4689999999999999999999999999999999987642 34555 43 236777765
Q ss_pred HHHHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 LEDVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ~~~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++..++.+ +|-.. ..-..+++|++ .+|||++.. +|+++||||||+ ||+.+...++ +.++++
T Consensus 450 i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~--~~~ililDEptsaLD~~t~~~i~-~~l~~~ 526 (582)
T PRK11176 450 IEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDEL 526 (582)
T ss_pred HHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 344455544331 11000 00023566654 999999999 999999999999 9999999999 777777
Q ss_pred HhCCCcEEEEEeccccccc
Q 026589 127 KSRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~ 145 (236)
. +++|+++|. |...
T Consensus 527 ~-~~~tvI~Vt----Hr~~ 540 (582)
T PRK11176 527 Q-KNRTSLVIA----HRLS 540 (582)
T ss_pred h-CCCEEEEEe----cchH
Confidence 4 467887774 6653
No 281
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=6.1e-22 Score=172.53 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-C----CCceEEEeccCCCC-----------CCCCC-CC--------cCCHHHhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-T----VRRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELI 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-~----~~G~i~i~~~d~~~-----------~~~~~-~~--------~~~i~~~i 57 (236)
-+++|+|.+||||||++++|.|+++ + .+|+|.++|.++.. ..+++ +| -.+|.+.+
T Consensus 32 E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi 111 (316)
T COG0444 32 EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQI 111 (316)
T ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHH
Confidence 5789999999999999999999997 3 57899999987532 12333 22 22333222
Q ss_pred ------------------hHHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHh
Q 026589 58 ------------------SLEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (236)
Q Consensus 58 ------------------~~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~ 114 (236)
.+.++++.+|+.+. ....|+ ..+++|++ +.||.+++. +|++||.||||+ ||...
T Consensus 112 ~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSGGMrQRV~IAmala~--~P~LlIADEPTTALDvt~ 188 (316)
T COG0444 112 AEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSGGMRQRVMIAMALAL--NPKLLIADEPTTALDVTV 188 (316)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCCcHHHHHHHHHHHhC--CCCEEEeCCCcchhhHHH
Confidence 15567888888864 223344 35667765 899999999 999999999998 99999
Q ss_pred HHHHHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhC
Q 026589 115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 115 ~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
+.+++ ++++++++ .|.++++|+ |++.-++.+++++.++..|.+.-.
T Consensus 189 QaqIl-~Ll~~l~~e~~~aiilIT----HDl~vva~~aDri~VMYaG~iVE~ 235 (316)
T COG0444 189 QAQIL-DLLKELQREKGTALILIT----HDLGVVAEIADRVAVMYAGRIVEE 235 (316)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEe----CCHHHHHHhcceEEEEECcEEEEe
Confidence 99999 99999986 699998886 888888888865555444444333
No 282
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=6.3e-22 Score=176.50 Aligned_cols=145 Identities=15% Similarity=0.244 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-CC-----cCCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~-----~~~i~~~i~---- 58 (236)
-.++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 109 e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~ 188 (329)
T PRK14257 109 KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPR 188 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHH
Confidence 5789999999999999999999986 579999999988631 22333 22 346776664
Q ss_pred -------------HHHHHHHhCCCCCCc--hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNGG--LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~~--~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.+... .......+++|++ ++|||+++. +|+++|+||||+ ||+.+...+.
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~--~p~IlLLDEPts~LD~~~~~~i~- 265 (329)
T PRK14257 189 NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL--EPEVLLMDEPTSALDPIATAKIE- 265 (329)
T ss_pred hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 223455666532100 0011223555543 999999999 999999999999 9999999987
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
+.++++.+ +.|++++. |.+.....+++.++
T Consensus 266 ~~i~~l~~-~~Tii~iT----H~l~~i~~~~Drii 295 (329)
T PRK14257 266 ELILELKK-KYSIIIVT----HSMAQAQRISDETV 295 (329)
T ss_pred HHHHHHhc-CCEEEEEe----CCHHHHHHhCCEEE
Confidence 88888865 67887775 88777767665333
No 283
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.1e-22 Score=170.96 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC-----------CCCCCC-CCc-----CCHHHhhh--
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA-----------AENFDY-PVA-----MDIRELIS-- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~-----------~~~~~~-~~~-----~~i~~~i~-- 58 (236)
-+++|+||||||||||+++|+|+.+| ++|+|.++|.+.. ...++| +++ .++++++.
T Consensus 43 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~ 122 (265)
T PRK14252 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG 122 (265)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhH
Confidence 57999999999999999999999875 7999999876531 112334 221 25555543
Q ss_pred ---------------HHHHHHHhCCCCC--CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 59 ---------------LEDVMEELGLGPN--GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 59 ---------------~~~~l~~~~l~~~--~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
+.++++.+++.+. .........++++.+ +.||++++. +|+++|+||||+ ||+.++..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l 200 (265)
T PRK14252 123 LRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALAT--DPEILLFDEPTSALDPIATASI 200 (265)
T ss_pred HHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHH
Confidence 2234444555320 000011123444433 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
. ++++++++ +.++++++ |.......+++.+
T Consensus 201 ~-~~l~~l~~-~~tiiivt----h~~~~~~~~~d~i 230 (265)
T PRK14252 201 E-ELISDLKN-KVTILIVT----HNMQQAARVSDYT 230 (265)
T ss_pred H-HHHHHHHh-CCEEEEEe----cCHHHHHHhCCEE
Confidence 9 89999865 67777774 8777666666533
No 284
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=5.3e-22 Score=189.25 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-.++|+||+|||||||++.|+|++ |++|+|.++|.|+.. +.++| +| +-|++|++. +
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei 455 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQL 455 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHH
Confidence 468999999999999999999999 999999999987642 34455 33 346888875 3
Q ss_pred HHHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ +|-.. ..-..+++|++ ++|||+++. +|+++||||||+ ||..+.+.+. +.++++.
T Consensus 456 ~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~--~~~IliLDE~TSaLD~~te~~i~-~~l~~~~ 532 (588)
T PRK11174 456 QQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ--PCQLLLLDEPTASLDAHSEQLVM-QALNAAS 532 (588)
T ss_pred HHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence 44444443321 11000 00023566654 999999999 999999999999 9999999999 7778774
Q ss_pred hCCCcEEEEEeccccccc
Q 026589 128 SRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~ 145 (236)
+++|+++|. |..+
T Consensus 533 -~~~TvIiIt----Hrl~ 545 (588)
T PRK11174 533 -RRQTTLMVT----HQLE 545 (588)
T ss_pred -CCCEEEEEe----cChH
Confidence 467887774 6654
No 285
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=9.4e-22 Score=168.59 Aligned_cols=142 Identities=16% Similarity=0.254 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+.. |++|+|.++|.++.. ..+.| +++ .++.+++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~ 109 (250)
T PRK14266 30 SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhHHh
Confidence 5789999999999999999999864 389999999976531 12333 221 14444432
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++++.+++.... ........++++.+ +.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEP~~gLD~~~~~~l~- 186 (250)
T PRK14266 110 IHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV--SPEVILMDEPCSALDPISTTKIE- 186 (250)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 23345555653210 00011223455543 999999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhh
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~ 152 (236)
++++++++ +.+++++. |...+...+++
T Consensus 187 ~~l~~~~~-~~tiii~s----h~~~~~~~~~~ 213 (250)
T PRK14266 187 DLIHKLKE-DYTIVIVT----HNMQQATRVSK 213 (250)
T ss_pred HHHHHHhc-CCeEEEEE----CCHHHHHhhcC
Confidence 99998854 77887774 77776666664
No 286
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=9.7e-22 Score=185.47 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CC--CCCCCCCCcCCHHHhhh---------------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENFDYPVAMDIRELIS--------------------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-~~--~~~~~~~~~~~i~~~i~--------------------- 58 (236)
.+++|+||||||||||+++|+|+++|++|+|.+++.. ++ .+....++..++++++.
T Consensus 28 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 107 (530)
T PRK15064 28 NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPE 107 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 4789999999999999999999999999999987632 11 11111222333333321
Q ss_pred ---------------------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc
Q 026589 59 ---------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ 109 (236)
Q Consensus 59 ---------------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~ 109 (236)
+.++++.+|+..... ......+++|++ ++||++++. +|+++||||||+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGq~qrv~lA~aL~~--~p~lLlLDEPt~ 184 (530)
T PRK15064 108 MSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH-YGLMSEVAPGWKLRVLLAQALFS--NPDILLLDEPTN 184 (530)
T ss_pred cccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh-cCchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCc
Confidence 345677778754211 112356777765 999999999 999999999999
Q ss_pred -ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 110 -IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 110 -LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
||+.++..+. ++++ +.|.+||++. |.......+++.++....+.
T Consensus 185 ~LD~~~~~~l~-~~l~---~~~~tiiivs----Hd~~~~~~~~d~i~~l~~g~ 229 (530)
T PRK15064 185 NLDINTIRWLE-DVLN---ERNSTMIIIS----HDRHFLNSVCTHMADLDYGE 229 (530)
T ss_pred ccCHHHHHHHH-HHHH---hCCCeEEEEe----CCHHHHHhhcceEEEEeCCE
Confidence 9999999888 7665 3577887775 88777777776555544443
No 287
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.86 E-value=1.6e-21 Score=157.71 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-CC-----cCCHHHhhhHHHHHHHhCCCCCCchhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PV-----AMDIRELISLEDVMEELGLGPNGGLIY 76 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-~~-----~~~i~~~i~~~~~l~~~~l~~~~~~~~ 76 (236)
-+++|+||||||||||+++|+|+++|++|+|.+++. ..+.| +| ..++++++... .
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~~~~~~~tv~~nl~~~--------~------- 88 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQRPYLPLGTLREQLIYP--------W------- 88 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCCCccccccHHHHhhcc--------C-------
Confidence 478999999999999999999999999999999763 22222 22 23555554321 1
Q ss_pred hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhh
Q 026589 77 CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (236)
Q Consensus 77 ~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~ 152 (236)
...++++.+ +.+|++++. +|+++|+||||+ ||+.++..+. ++++++ +.+++++. |.... ..+++
T Consensus 89 -~~~LS~G~~~rv~laral~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~---~~tiiivs----h~~~~-~~~~d 155 (166)
T cd03223 89 -DDVLSGGEQQRLAFARLLLH--KPKFVFLDEATSALDEESEDRLY-QLLKEL---GITVISVG----HRPSL-WKFHD 155 (166)
T ss_pred -CCCCCHHHHHHHHHHHHHHc--CCCEEEEECCccccCHHHHHHHH-HHHHHh---CCEEEEEe----CChhH-HhhCC
Confidence 123555543 999999999 999999999999 9999999888 777775 56777664 55432 23444
No 288
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.86 E-value=4.8e-22 Score=192.75 Aligned_cols=133 Identities=20% Similarity=0.148 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh---------HH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~ 60 (236)
-.++|+||||||||||+|.|+|+++|++|+|.++|.++.. +.++| +| +-|++|++. +.
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~ 559 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAW 559 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHH
Confidence 4689999999999999999999999999999999988753 34555 33 236788875 34
Q ss_pred HHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 61 DVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 61 ~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++..++.+ .|-.. ..-..+++|++ ++|||++.. +|+++||||||+ ||..+.+.+. +.++++
T Consensus 560 ~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~--~p~iLiLDEpTS~LD~~te~~i~-~~L~~~-- 634 (686)
T TIGR03797 560 EAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR--KPRILLFDEATSALDNRTQAIVS-ESLERL-- 634 (686)
T ss_pred HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh--
Confidence 5565555542 11000 00023555554 999999999 999999999999 9999999888 666665
Q ss_pred CCCcEEEEEeccccccc
Q 026589 129 RNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~ 145 (236)
++|+++|. |..+
T Consensus 635 -~~T~IiIt----Hr~~ 646 (686)
T TIGR03797 635 -KVTRIVIA----HRLS 646 (686)
T ss_pred -CCeEEEEe----cChH
Confidence 46777774 7654
No 289
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.86 E-value=4e-22 Score=173.64 Aligned_cols=156 Identities=18% Similarity=0.138 Sum_probs=108.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCc-----CCHHHhhh---------HH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~---------~~ 60 (236)
-+++|+||||||||||+++|+|+++ .+|+|+++|.++.. ..+.| +++ .++++++. +.
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~ 109 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW 109 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHH
Confidence 4789999999999999999999998 78999999987632 22333 222 25666653 45
Q ss_pred HHHHHhCCCCCCchhh-hH--------HhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 61 DVMEELGLGPNGGLIY-CM--------EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 61 ~~l~~~~l~~~~~~~~-~~--------~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++.+|+.+...... .+ ..++++++ +.|||+++. +|+++|+||||+ ||+.++..+. +.++++.
T Consensus 110 ~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~--~p~illlDEpts~LD~~~~~~l~-~~l~~~~- 185 (275)
T cd03289 110 KVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPITYQVIR-KTLKQAF- 185 (275)
T ss_pred HHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc-
Confidence 5677777753211100 00 01444443 999999999 999999999999 9999999888 8888764
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
.+++++++. |.+.... .++.++++..+.+....++
T Consensus 186 ~~~tii~is----H~~~~i~-~~dri~vl~~G~i~~~g~~ 220 (275)
T cd03289 186 ADCTVILSE----HRIEAML-ECQRFLVIEENKVRQYDSI 220 (275)
T ss_pred CCCEEEEEE----CCHHHHH-hCCEEEEecCCeEeecCCH
Confidence 478888775 7765443 3665555555555444443
No 290
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.86 E-value=7.7e-22 Score=156.11 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=85.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-CCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
+.+++|+||||||||||+++|+|+++|++|+|.++|. ..+.| ++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~------------------------------- 70 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ------------------------------- 70 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc-------------------------------
Confidence 3578999999999999999999999999999999873 22333 21
Q ss_pred hhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhh
Q 026589 81 LEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 81 ~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
++++ .++.||++++. +|+++|+|||++ ||+.++..+. ++++++ +.+++++. |...+...+++.+
T Consensus 71 lS~G~~~rv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~---~~til~~t----h~~~~~~~~~d~v 137 (144)
T cd03221 71 LSGGEKMRLALAKLLLE--NPNLLLLDEPTNHLDLESIEALE-EALKEY---PGTVILVS----HDRYFLDQVATKI 137 (144)
T ss_pred CCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHc---CCEEEEEE----CCHHHHHHhCCEE
Confidence 2222 23899999999 999999999999 9999999888 787776 35776664 7776666665543
No 291
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.86 E-value=7.7e-22 Score=170.09 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh---------HH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~ 60 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++. +.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~ 127 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLW 127 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHH
Confidence 4789999999999999999999999999999999876531 12222 11 123444332 22
Q ss_pred HHHHHhCCCCCCc---------hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 61 DVMEELGLGPNGG---------LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 61 ~~l~~~~l~~~~~---------~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++..++..... .......++++.+ +.||++++. +|+++|+||||+ ||+.++..++ ++++++.
T Consensus 128 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~~- 203 (257)
T cd03288 128 EALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR--KSSILIMDEATASIDMATENILQ-KVVMTAF- 203 (257)
T ss_pred HHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHhc-
Confidence 3333333321000 0000123444443 999999999 999999999999 9999999888 8888874
Q ss_pred CCCcEEEEEecccccccch
Q 026589 129 RNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~ 147 (236)
++.+++++. |.....
T Consensus 204 ~~~tiii~s----h~~~~~ 218 (257)
T cd03288 204 ADRTVVTIA----HRVSTI 218 (257)
T ss_pred CCCEEEEEe----cChHHH
Confidence 477887664 665544
No 292
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.86 E-value=9.2e-22 Score=182.44 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC----CceEEEeccCCCC-----------CCCCC---------CCcCCHHHhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~----~G~i~i~~~d~~~-----------~~~~~---------~~~~~i~~~i~ 58 (236)
-++||+|.+||||||+.+++.|++++. +|+|.++|.|... ..++| .|..+|.+.+.
T Consensus 36 E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~ 115 (539)
T COG1123 36 EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR 115 (539)
T ss_pred cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHH
Confidence 579999999999999999999999887 7999999976521 22333 23345554443
Q ss_pred -----------------HHHHHHHhCCCCCCch-hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHH
Q 026589 59 -----------------LEDVMEELGLGPNGGL-IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (236)
Q Consensus 59 -----------------~~~~l~~~~l~~~~~~-~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~ 117 (236)
+.++++++|+.+.... .|+ +.+++|++ +.||+|++. +|++||+||||+ ||+.++.+
T Consensus 116 E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP-heLSGG~rQRv~iAmALa~--~P~LLIaDEPTTaLDvt~q~q 192 (539)
T COG1123 116 EALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-HQLSGGMRQRVMIAMALAL--KPKLLIADEPTTALDVTTQAQ 192 (539)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC-cccCchHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHH
Confidence 6778899999865443 355 46777765 999999999 999999999998 99999999
Q ss_pred HHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 118 VLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 118 ~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
++ ++++++++ .|+++++++ |.+.-.+.++++++++..|.+.-..+.
T Consensus 193 IL-~llk~l~~e~g~a~l~IT----HDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 193 IL-DLLKDLQRELGMAVLFIT----HDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HH-HHHHHHHHHcCcEEEEEc----CCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 99 99999985 699998885 888878888765554444444444433
No 293
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.86 E-value=1.7e-21 Score=182.09 Aligned_cols=139 Identities=19% Similarity=0.270 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCC--------CCCCCC-CCc--------CCHHHhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA--------AENFDY-PVA--------MDIRELI------- 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-~~G~i~i~~~d~~--------~~~~~~-~~~--------~~i~~~i------- 57 (236)
-+++|+||||||||||+++|+|+.++ ++|+|+++|.++. ...++| +|+ .++++.+
T Consensus 287 e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
T PRK10938 287 EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS 366 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccc
Confidence 57899999999999999999998775 6999999986531 122333 221 1222221
Q ss_pred -------------hHHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 58 -------------SLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 58 -------------~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
.++++++.+++.+ .... ....+++|++ ++||++++. +|+++|+||||+ ||+.++..++
T Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~- 441 (490)
T PRK10938 367 IGIYQAVSDRQQKLAQQWLDILGIDKRTADA--PFHSLSWGQQRLALIVRALVK--HPTLLILDEPLQGLDPLNRQLVR- 441 (490)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhhccC--chhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-
Confidence 1457788888875 3222 2345667655 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCC-cEEEEEecccccccchhhH
Q 026589 121 NFVDHLKSRNF-NVCAVYLLDSQFITDVTKF 150 (236)
Q Consensus 121 ~ll~~l~~~~~-~ii~v~l~d~~~~~d~~~~ 150 (236)
++++++++++. +++++. |...+...+
T Consensus 442 ~~L~~l~~~~~~tviivs----Hd~~~~~~~ 468 (490)
T PRK10938 442 RFVDVLISEGETQLLFVS----HHAEDAPAC 468 (490)
T ss_pred HHHHHHHhcCCcEEEEEe----cchhhhhhh
Confidence 99999977654 576664 777666553
No 294
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.6e-21 Score=172.24 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-CCc-----CCHHHhhh----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PVA-----MDIRELIS---- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~~-~~~-----~~i~~~i~---- 58 (236)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..++| +++ .++++++.
T Consensus 72 e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 151 (305)
T PRK14264 72 SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPR 151 (305)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHh
Confidence 4789999999999999999999986 689999999876531 12334 222 24555443
Q ss_pred -------------------------HHHHHHHhCCCCCC--chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc
Q 026589 59 -------------------------LEDVMEELGLGPNG--GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ 109 (236)
Q Consensus 59 -------------------------~~~~l~~~~l~~~~--~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~ 109 (236)
+.++++.+++.+.. ........++++++ +.||++++. +|++||||||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lLLLDEPts 229 (305)
T PRK14264 152 KHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV--DPEVILMDEPAS 229 (305)
T ss_pred hcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcc
Confidence 22334444542100 00001123555543 999999999 999999999999
Q ss_pred -ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhh
Q 026589 110 -IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (236)
Q Consensus 110 -LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~ 153 (236)
||+.++..+. ++++++++ +.+++++. |.......+++.
T Consensus 230 gLD~~~~~~l~-~~L~~~~~-~~tiiivt----H~~~~i~~~~d~ 268 (305)
T PRK14264 230 ALDPIATSKIE-DLIEELAE-EYTVVVVT----HNMQQAARISDQ 268 (305)
T ss_pred cCCHHHHHHHH-HHHHHHhc-CCEEEEEE----cCHHHHHHhcCE
Confidence 9999999999 99999876 46776664 877766666653
No 295
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=8.4e-22 Score=187.59 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +-+++|++. +
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i 446 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEAL 446 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHH
Confidence 4689999999999999999999999999999999987642 23444 33 336888874 5
Q ss_pred HHHHHHhCCCCC-----Cchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 60 EDVMEELGLGPN-----GGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 60 ~~~l~~~~l~~~-----~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
.++++..++.+. |-.. ..-..+++|++ ++|||+++. +|+++||||||+ ||..+...+. +.++++.
T Consensus 447 ~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~--~~~ililDE~ts~lD~~t~~~i~-~~l~~~~- 522 (574)
T PRK11160 447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH--DAPLLLLDEPTEGLDAETERQIL-ELLAEHA- 522 (574)
T ss_pred HHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-
Confidence 566777776532 1000 00123555544 999999999 999999999999 9999999998 7777774
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccc
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~ 180 (236)
+++|++++. |..+.... + .++-++.++.+...
T Consensus 523 ~~~tviiit----Hr~~~~~~-~---------------d~i~~l~~G~i~~~ 554 (574)
T PRK11160 523 QNKTVLMIT----HRLTGLEQ-F---------------DRICVMDNGQIIEQ 554 (574)
T ss_pred CCCEEEEEe----cChhHHHh-C---------------CEEEEEeCCeEEEe
Confidence 477887774 66543322 2 46666666665543
No 296
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.86 E-value=4.6e-22 Score=193.50 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +-|++|++. +
T Consensus 506 e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i 585 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADL 585 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHH
Confidence 4689999999999999999999999999999999988642 34555 33 336888875 4
Q ss_pred HHHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ .|-.. ..-..+++|++ ++|||++.. +|+++||||||+ ||..+.+.+. +.+++
T Consensus 586 ~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~--~p~iliLDEptS~LD~~te~~i~-~~l~~-- 660 (710)
T TIGR03796 586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR--NPSILILDEATSALDPETEKIID-DNLRR-- 660 (710)
T ss_pred HHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh--CCCEEEEECccccCCHHHHHHHH-HHHHh--
Confidence 44555554432 11000 00023555554 999999999 999999999999 9999998888 55544
Q ss_pred hCCCcEEEEEecccccccc
Q 026589 128 SRNFNVCAVYLLDSQFITD 146 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d 146 (236)
.++|+|+|. |..+.
T Consensus 661 -~~~T~Iiit----Hrl~~ 674 (710)
T TIGR03796 661 -RGCTCIIVA----HRLST 674 (710)
T ss_pred -cCCEEEEEe----cCHHH
Confidence 478887774 77643
No 297
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=1.8e-21 Score=184.08 Aligned_cols=134 Identities=23% Similarity=0.295 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| .-++++++. +
T Consensus 345 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~ 424 (544)
T TIGR01842 345 EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKI 424 (544)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHH
Confidence 4689999999999999999999999999999999987532 22333 22 236777664 2
Q ss_pred ---------HHHHHHh--CCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 60 ---------EDVMEEL--GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 60 ---------~~~l~~~--~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
++.++.+ |+....+. .-..+++|++ ++|||++.. +|+++||||||+ ||..+...+. +.+++
T Consensus 425 ~~~~~~~~~~~~i~~l~~gl~t~~~~--~g~~LSgGq~qrl~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~ 499 (544)
T TIGR01842 425 IEAAKLAGVHELILRLPDGYDTVIGP--GGATLSGGQRQRIALARALYG--DPKLVVLDEPNSNLDEEGEQALA-NAIKA 499 (544)
T ss_pred HHHHHHhChHHHHHhCccccccccCC--CcCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccccCHHHHHHHH-HHHHH
Confidence 2233333 22211100 0123556654 999999999 999999999999 9999999998 88888
Q ss_pred HHhCCCcEEEEEeccccccc
Q 026589 126 LKSRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~ 145 (236)
+.+++++++++. |...
T Consensus 500 ~~~~~~tvi~it----h~~~ 515 (544)
T TIGR01842 500 LKARGITVVVIT----HRPS 515 (544)
T ss_pred HhhCCCEEEEEe----CCHH
Confidence 765678887774 6654
No 298
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.85 E-value=9.4e-22 Score=190.92 Aligned_cols=135 Identities=20% Similarity=0.188 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-|++|++. +
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i 571 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEI 571 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHH
Confidence 4689999999999999999999999999999999987643 34555 33 236777775 3
Q ss_pred HHHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ .|-.. ..-..+++|++ ++|||++.. +|+++||||||+ ||+.+...+. +.++++.
T Consensus 572 ~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~--~p~iliLDE~Ts~LD~~te~~i~-~~l~~~~ 648 (694)
T TIGR03375 572 LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR--DPPILLLDEPTSAMDNRSEERFK-DRLKRWL 648 (694)
T ss_pred HHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHh
Confidence 44455444321 11000 00023555554 999999999 999999999999 9999999999 7777775
Q ss_pred hCCCcEEEEEeccccccc
Q 026589 128 SRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~ 145 (236)
+ ++|+++|. |..+
T Consensus 649 ~-~~T~iiIt----Hrl~ 661 (694)
T TIGR03375 649 A-GKTLVLVT----HRTS 661 (694)
T ss_pred C-CCEEEEEe----cCHH
Confidence 4 67887774 7664
No 299
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-20 Score=152.31 Aligned_cols=127 Identities=14% Similarity=0.064 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC-------------CCCCCCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------------NFDYPVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~-------------~~~~~~~~~i~~~i~----------- 58 (236)
-++.|.||||||||||+|+++|+++|++|+|++.|..+... ..+..+.+|+.|++.
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~ 108 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA 108 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCch
Confidence 35789999999999999999999999999999998766431 122244667777764
Q ss_pred --HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcE
Q 026589 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (236)
Q Consensus 59 --~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (236)
+.++++.+||....... ..+++.+++ ++|||-++. .++++|||||++ ||......+- .++..-.++|.-|
T Consensus 109 ~~i~~Al~~vgL~g~~dlp--~~~LSAGQqRRvAlArL~ls--~~pLWiLDEP~taLDk~g~a~l~-~l~~~H~~~GGiV 183 (209)
T COG4133 109 ATIWEALAQVGLAGLEDLP--VGQLSAGQQRRVALARLWLS--PAPLWILDEPFTALDKEGVALLT-ALMAAHAAQGGIV 183 (209)
T ss_pred hhHHHHHHHcCcccccccc--hhhcchhHHHHHHHHHHHcC--CCCceeecCcccccCHHHHHHHH-HHHHHHhcCCCEE
Confidence 77889999998765443 245666654 999999999 999999999998 9999998877 6666655554444
Q ss_pred E
Q 026589 134 C 134 (236)
Q Consensus 134 i 134 (236)
+
T Consensus 184 l 184 (209)
T COG4133 184 L 184 (209)
T ss_pred E
Confidence 3
No 300
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.85 E-value=9.9e-22 Score=187.57 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh---------HH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~ 60 (236)
-.++|+|+||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-|+++++. +.
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~ 447 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVW 447 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHH
Confidence 4689999999999999999999999999999999987642 34555 33 236787775 45
Q ss_pred HHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 61 DVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 61 ~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++..|+.. +|-.. ..-..+++|++ .+|||+++. +|+++||||||+ ||..+.+.+. +.++++.+
T Consensus 448 ~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~--~~~illlDEpts~LD~~t~~~i~-~~l~~~~~ 524 (592)
T PRK10790 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ--TPQILILDEATANIDSGTEQAIQ-QALAAVRE 524 (592)
T ss_pred HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHhC
Confidence 5666655432 11000 00023555543 999999999 999999999999 9999999998 77787754
Q ss_pred CCCcEEEEEeccccccc
Q 026589 129 RNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~ 145 (236)
++|+++|. |...
T Consensus 525 -~~tvIivt----Hr~~ 536 (592)
T PRK10790 525 -HTTLVVIA----HRLS 536 (592)
T ss_pred -CCEEEEEe----cchH
Confidence 57877774 6653
No 301
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.85 E-value=2.8e-21 Score=185.37 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCCC----CCCCC-------CCcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~---~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~---------- 58 (236)
-+++|+||||||||||+++|+|..++. +|+|.++|.+... ..++| .+..|++|++.
T Consensus 52 e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (617)
T TIGR00955 52 ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR 131 (617)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCC
Confidence 578999999999999999999998874 7999999987531 22334 33567887763
Q ss_pred ---------HHHHHHHhCCCCCCchhhhH----HhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCM----EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~----~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
++++++.+|+.+.......- ..++++.+ +.||++++. +|+++++||||+ ||..+...++ +.
T Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~--~p~vlllDEPtsgLD~~~~~~l~-~~ 208 (617)
T TIGR00955 132 VTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT--DPPLLFCDEPTSGLDSFMAYSVV-QV 208 (617)
T ss_pred CCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc--CCCEEEeeCCCcchhHHHHHHHH-HH
Confidence 67788899987643332211 12555544 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCcEEEEEeccccccc-chhhHhhhhHHHHHHHHhhCCCeeee
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNI 171 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~-d~~~~~~~~l~~~~~~i~~~~p~i~v 171 (236)
++++++.|.+++++. |... +....++.+++...|++....|.-++
T Consensus 209 L~~l~~~g~tvi~~~----hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 209 LKGLAQKGKTIICTI----HQPSSELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred HHHHHhCCCEEEEEe----CCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence 999987788887664 6664 56778888888777877777666444
No 302
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.5e-21 Score=154.77 Aligned_cols=120 Identities=23% Similarity=0.227 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
.+++|+||||||||||+++|+|.++|.+|+|+++|.+..... ..+.....++-+. ++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~--------------~~~~~~~i~~~~q---------lS 82 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP--------------LEELRRRIGYVPQ---------LS 82 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC--------------HHHHHhceEEEee---------CC
Confidence 478999999999999999999999999999999987543210 0011111111110 33
Q ss_pred hcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhh
Q 026589 83 DNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (236)
Q Consensus 83 ~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~ 152 (236)
++.+ +.++++++. +|+++++|||++ +|..++..+. ++++++.+.+.+++++. |.......+++
T Consensus 83 ~G~~~r~~l~~~l~~--~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~s----h~~~~~~~~~d 148 (157)
T cd00267 83 GGQRQRVALARALLL--NPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIVT----HDPELAELAAD 148 (157)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEe----CCHHHHHHhCC
Confidence 3332 899999999 999999999999 9999999999 88888866667776664 77766666554
No 303
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.85 E-value=1.9e-21 Score=173.23 Aligned_cols=155 Identities=19% Similarity=0.273 Sum_probs=123.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------C------CCCC---CCcCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------E------NFDY---PVAMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~----------~------~~~~---~~~~~i~~~i~----- 58 (236)
-.++|+|.+|||||||-++|.+++++. |.|.+.|.++.. . .-+| .|.++|.+.|+
T Consensus 314 qTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~v 392 (534)
T COG4172 314 QTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRV 392 (534)
T ss_pred CeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhh
Confidence 468999999999999999999999887 999999988742 0 1133 45667777665
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 -------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
+.++|+++||+|+...+|+. .++++++ .+|||+++. +|++++|||||+ ||...+.+++ ++
T Consensus 393 h~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh-EFSGGQRQRIAIARAliL--kP~~i~LDEPTSALD~SVQaQvv-~L 468 (534)
T COG4172 393 HEPKLSAAERDQRVIEALEEVGLDPATRNRYPH-EFSGGQRQRIAIARALIL--KPELILLDEPTSALDRSVQAQVL-DL 468 (534)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc-ccCcchhhHHHHHHHHhc--CCcEEEecCCchHhhHHHHHHHH-HH
Confidence 78899999999987777774 5666655 999999999 999999999999 9999999999 99
Q ss_pred HHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccch
Q 026589 123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (236)
Q Consensus 123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~~ 181 (236)
++.|++ .|.+-+++ ||++.-+-..|+ .+-|+.++..++..
T Consensus 469 Lr~LQ~k~~LsYLFI----SHDL~VvrAl~~---------------~viVm~~GkiVE~G 509 (534)
T COG4172 469 LRDLQQKHGLSYLFI----SHDLAVVRALCH---------------RVIVMRDGKIVEQG 509 (534)
T ss_pred HHHHHHHhCCeEEEE----eccHHHHHHhhc---------------eEEEEeCCEEeeeC
Confidence 999986 57666555 588765555554 55666666666544
No 304
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.85 E-value=3.8e-21 Score=181.21 Aligned_cols=131 Identities=20% Similarity=0.205 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-CC-----cCCHHHhhh----------HH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PV-----AMDIRELIS----------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~------~~~~~-~~-----~~~i~~~i~----------~~ 60 (236)
..++|+||+|||||||++.|+|+++|++|+|.++|.|... +.++| +| +-|++|++. +.
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~ 441 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELW 441 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHH
Confidence 4689999999999999999999999999999999987642 34455 33 336888875 44
Q ss_pred HHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 61 DVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 61 ~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++..++.+ +|-.. ..-..+++|++ .+|||++.. +|+++||||||+ ||..+.+.+. +.++++ .
T Consensus 442 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~--~~~iliLDE~TSaLD~~te~~I~-~~l~~~-~ 517 (529)
T TIGR02868 442 AALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA--DAPILLLDEPTEHLDAGTESELL-EDLLAA-L 517 (529)
T ss_pred HHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHh-c
Confidence 5666555532 11000 00023555554 999999999 999999999999 9999999998 767765 3
Q ss_pred CCCcEEEEE
Q 026589 129 RNFNVCAVY 137 (236)
Q Consensus 129 ~~~~ii~v~ 137 (236)
.++|+++|.
T Consensus 518 ~~~TvIiIt 526 (529)
T TIGR02868 518 SGKTVVVIT 526 (529)
T ss_pred CCCEEEEEe
Confidence 467887774
No 305
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.8e-21 Score=180.24 Aligned_cols=155 Identities=21% Similarity=0.251 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----CcCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~-----~~~~i~~~i~----------~ 59 (236)
..++|+|+||||||||++.|+|+++|++|+|.++|.+... +++.| + ..-++||++. +
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i 427 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEI 427 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHH
Confidence 4589999999999999999999999999999999987643 23444 2 2347888884 6
Q ss_pred HHHHHHhCCCCCC----chhhhHH----hhhhcH--HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 60 EDVMEELGLGPNG----GLIYCME----HLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 60 ~~~l~~~~l~~~~----~~~~~~~----~~~~~~--s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
.+++++.++.+.- +...... .+++|+ ++++||++.. +++++||||||+ ||.++.+.+. +.+.++.+
T Consensus 428 ~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~ 504 (559)
T COG4988 428 IAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLDEPTAHLDAETEQIIL-QALQELAK 504 (559)
T ss_pred HHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC--CCCEEEecCCccCCCHhHHHHHH-HHHHHHHh
Confidence 6677776654321 1111111 144443 3999999999 999999999999 9999999999 88888866
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccch
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~~ 181 (236)
++|++++. |.+.+... ...|.|+.++.++...
T Consensus 505 -~ktvl~it----Hrl~~~~~----------------~D~I~vld~G~l~~~g 536 (559)
T COG4988 505 -QKTVLVIT----HRLEDAAD----------------ADRIVVLDNGRLVEQG 536 (559)
T ss_pred -CCeEEEEE----cChHHHhc----------------CCEEEEecCCceeccC
Confidence 47887775 77654333 3577888877777654
No 306
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.85 E-value=4.1e-21 Score=156.91 Aligned_cols=128 Identities=18% Similarity=0.183 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCCCCcCCHHHhhhHHHHHHHhCCCCC-CchhhhHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELISLEDVMEELGLGPN-GGLIYCME 79 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--~~~~~~~~~~i~~~i~~~~~l~~~~l~~~-~~~~~~~~ 79 (236)
-+++|+||||||||||++++. +++|++.+.+..+.. +.+.|. .+ .++++.+++++. .... ..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~-----~q----~~~l~~~~L~~~~~~~~--~~ 86 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFI-----DQ----LQFLIDVGLGYLTLGQK--LS 86 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEE-----hH----HHHHHHcCCCccccCCC--cC
Confidence 478999999999999999985 368999988664321 112231 11 578899998753 2111 23
Q ss_pred hhhhcHH--HHHHHHHhcCCC--CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhh
Q 026589 80 HLEDNLD--DWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (236)
Q Consensus 80 ~~~~~~s--~~la~~l~~~~~--p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~ 153 (236)
.++++++ +.||++++. + |+++|+|||++ ||+.++..+. +.++++++.|.+++++. |..... .+++.
T Consensus 87 ~LSgGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvIivS----H~~~~~-~~~d~ 157 (176)
T cd03238 87 TLSGGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILIE----HNLDVL-SSADW 157 (176)
T ss_pred cCCHHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEe----CCHHHH-HhCCE
Confidence 4555543 999999999 9 99999999999 9999999999 88888876788888775 665443 34543
No 307
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.5e-21 Score=184.21 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CC--CCCC--CCCCcCCHHHhhh-----------HHHHHHHh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENF--DYPVAMDIRELIS-----------LEDVMEEL 66 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-~~--~~~~--~~~~~~~i~~~i~-----------~~~~l~~~ 66 (236)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. ++ .+.. .++...++++++. +.++++.+
T Consensus 346 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~ 425 (530)
T PRK15064 346 ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL 425 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc
Confidence 4789999999999999999999999999999987632 11 1111 1233445665542 45678888
Q ss_pred CCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccc
Q 026589 67 GLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (236)
Q Consensus 67 ~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~ 142 (236)
++.. .... ....+++|++ ++||++++. +|+++|+||||+ ||+.++..+. ++++++ +.++|+++ |
T Consensus 426 ~l~~~~~~~--~~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~vs----H 493 (530)
T PRK15064 426 LFSQDDIKK--SVKVLSGGEKGRMLFGKLMMQ--KPNVLVMDEPTNHMDMESIESLN-MALEKY---EGTLIFVS----H 493 (530)
T ss_pred CCChhHhcC--cccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHC---CCEEEEEe----C
Confidence 8842 2111 1345666654 999999999 999999999999 9999999888 777765 34777664 8
Q ss_pred cccchhhHhhhh
Q 026589 143 FITDVTKFISGC 154 (236)
Q Consensus 143 ~~~d~~~~~~~~ 154 (236)
+......+++.+
T Consensus 494 d~~~~~~~~d~i 505 (530)
T PRK15064 494 DREFVSSLATRI 505 (530)
T ss_pred CHHHHHHhCCEE
Confidence 877666766533
No 308
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.85 E-value=1.8e-20 Score=175.69 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CCC--CCCCCCCCcCCHHHhhh---------------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPA--AENFDYPVAMDIRELIS--------------------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~-d~~--~~~~~~~~~~~i~~~i~--------------------- 58 (236)
-.+||||+||||||||+|+|+|...|++|+|...+- .++ .+..+.....++.+.+.
T Consensus 30 ~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~ 109 (530)
T COG0488 30 ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999999999999988652 111 12222222223333221
Q ss_pred -------------------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-c
Q 026589 59 -------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-I 110 (236)
Q Consensus 59 -------------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-L 110 (236)
+..++..+|+.+. ...+..+++|.+ ++||++|.. +|++|+|||||+ |
T Consensus 110 ~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~---~~~~~~LSGG~r~Rv~LA~aL~~--~pDlLLLDEPTNHL 184 (530)
T COG0488 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE---DRPVSSLSGGWRRRVALARALLE--EPDLLLLDEPTNHL 184 (530)
T ss_pred cchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc---cCchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccc
Confidence 2344444555553 223456777765 999999999 999999999999 9
Q ss_pred cHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchh
Q 026589 111 ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT 148 (236)
Q Consensus 111 D~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~ 148 (236)
|..+...+- +.++.. .| ++|+|. ||-+++..+.
T Consensus 185 D~~~i~WLe-~~L~~~--~g-tviiVS-HDR~FLd~V~ 217 (530)
T COG0488 185 DLESIEWLE-DYLKRY--PG-TVIVVS-HDRYFLDNVA 217 (530)
T ss_pred CHHHHHHHH-HHHHhC--CC-cEEEEe-CCHHHHHHHh
Confidence 999997776 655543 46 887775 6666665443
No 309
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.85 E-value=9.8e-22 Score=191.21 Aligned_cols=134 Identities=18% Similarity=0.182 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------- 58 (236)
-.++|+||||||||||+++|+|+++|++|+|.++|.|... +.++| +| +-|++|++.
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~ 580 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDE 580 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHH
Confidence 4689999999999999999999999999999999987632 34455 33 235777664
Q ss_pred HHHHHHHhCCCC------CCch--h-hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 LEDVMEELGLGP------NGGL--I-YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ~~~~l~~~~l~~------~~~~--~-~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++..++.+ .|-. . ..-..+++|++ ++|||++.. +|+++||||||+ ||..+...+. +.++++
T Consensus 581 i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~--~p~iliLDE~Ts~LD~~te~~i~-~~L~~~ 657 (708)
T TIGR01193 581 IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT--DSKVLILDESTSNLDTITEKKIV-NNLLNL 657 (708)
T ss_pred HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHh
Confidence 333444444421 1100 0 00023555554 999999999 999999999999 9999999998 666665
Q ss_pred HhCCCcEEEEEeccccccc
Q 026589 127 KSRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~ 145 (236)
+++|+|+|. |..+
T Consensus 658 --~~~T~Iiit----Hr~~ 670 (708)
T TIGR01193 658 --QDKTIIFVA----HRLS 670 (708)
T ss_pred --cCCEEEEEe----cchH
Confidence 367887774 6654
No 310
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.84 E-value=2.5e-21 Score=188.03 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| .-+++|++. +
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i 563 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV 563 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999987642 33444 33 236777765 3
Q ss_pred HHHHHHhCCCC------CCch---hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGP------NGGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ +|-. -..-..+++|++ ++|||+++. +|+++||||||+ ||..+...+. +.++++.
T Consensus 564 ~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~~~ 640 (694)
T TIGR01846 564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG--NPRILIFDEATSALDYESEALIM-RNMREIC 640 (694)
T ss_pred HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh
Confidence 33444444321 1100 000123555554 999999999 999999999999 9999999999 8788874
Q ss_pred hCCCcEEEEEecccccccc
Q 026589 128 SRNFNVCAVYLLDSQFITD 146 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d 146 (236)
.+.|++++. |....
T Consensus 641 -~~~t~i~it----H~~~~ 654 (694)
T TIGR01846 641 -RGRTVIIIA----HRLST 654 (694)
T ss_pred -CCCEEEEEe----CChHH
Confidence 577887774 76643
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=1.4e-20 Score=178.60 Aligned_cols=140 Identities=16% Similarity=0.109 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--C--CCCC-CCCCcCCHHHhhh--------------HHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--A--AENF-DYPVAMDIRELIS--------------LEDVM 63 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~--~--~~~~-~~~~~~~i~~~i~--------------~~~~l 63 (236)
-+++|+||||||||||+++|+|+++|++|+|.+.+ +. + .+.. .+.+..++++++. ..+++
T Consensus 351 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 429 (556)
T PRK11819 351 GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV 429 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHH
Confidence 57999999999999999999999999999999843 21 1 1221 2233446665542 34577
Q ss_pred HHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecc
Q 026589 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (236)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (236)
+.+++.+.. .......+++|++ ++||++++. +|+++||||||+ ||+.++..+. ++++++. + ++++++
T Consensus 430 ~~~~l~~~~-~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-tvi~vt--- 499 (556)
T PRK11819 430 GRFNFKGGD-QQKKVGVLSGGERNRLHLAKTLKQ--GGNVLLLDEPTNDLDVETLRALE-EALLEFP--G-CAVVIS--- 499 (556)
T ss_pred HhCCCChhH-hcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhCC--C-eEEEEE---
Confidence 888885321 1111345666654 999999999 999999999999 9999999999 8888762 4 666654
Q ss_pred cccccchhhHhhhh
Q 026589 141 SQFITDVTKFISGC 154 (236)
Q Consensus 141 ~~~~~d~~~~~~~~ 154 (236)
|.......+|+.+
T Consensus 500 -Hd~~~~~~~~d~i 512 (556)
T PRK11819 500 -HDRWFLDRIATHI 512 (556)
T ss_pred -CCHHHHHHhCCEE
Confidence 8877777766533
No 312
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=6e-20 Score=146.09 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=109.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC------CC-------CCCCC-------CCcCCHHHhhh-----
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP------AA-------ENFDY-------PVAMDIRELIS----- 58 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~------~~-------~~~~~-------~~~~~i~~~i~----- 58 (236)
.+.++||+|+|||||+|.++=+..|.+|+..+-|... +. ++++. .|.+++-+++-
T Consensus 30 tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~k 109 (242)
T COG4161 30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCR 109 (242)
T ss_pred EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHH
Confidence 5789999999999999999999999999999977432 11 12221 34555555432
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHhhhhcH--HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 ------------~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
..++++++.+.+... ++++ .+++++ +++|||++++ +|++++|||||+ |||....++. +++
T Consensus 110 v~gl~~~qa~~~a~ellkrlrl~~~ad-r~pl-hlsggqqqrvaiaralmm--kpqvllfdeptaaldpeitaqvv-~ii 184 (242)
T COG4161 110 VLGLSKDQALARAEKLLKRLRLKPYAD-RYPL-HLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SII 184 (242)
T ss_pred HhCCCHHHHHHHHHHHHHHhccccccc-cCce-ecccchhhhHHHHHHHhc--CCcEEeecCcccccCHHHHHHHH-HHH
Confidence 567788888887643 3343 244443 3999999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
++|+..|.|-++|+ |...-..+..+.++.+
T Consensus 185 kel~~tgitqvivt----hev~va~k~as~vvym 214 (242)
T COG4161 185 KELAETGITQVIVT----HEVEVARKTASRVVYM 214 (242)
T ss_pred HHHHhcCceEEEEE----eehhHHHhhhhheEee
Confidence 99998999988775 7776666666544443
No 313
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.84 E-value=3.9e-21 Score=182.67 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
..++|+||+||||||+++.|.|+++|++|+|.++|.|+.. +.+++ +| +-|+++++. +
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei 435 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEI 435 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999988753 34454 33 246888775 2
Q ss_pred HHHHHHh-----------CCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 60 EDVMEEL-----------GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 60 ~~~l~~~-----------~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
.++++.. |+...-+.. -..+++|++ ++|||++.. +|+++||||||+ +|..+...+. +.+++
T Consensus 436 ~~a~k~a~~~d~I~~lp~g~dt~vge~--G~~LSgGQrQrlaiARall~--~~~ILILDEaTSalD~~tE~~I~-~~l~~ 510 (567)
T COG1132 436 EEALKLANAHEFIANLPDGYDTIVGER--GVNLSGGQRQRLAIARALLR--NPPILILDEATSALDTETEALIQ-DALKK 510 (567)
T ss_pred HHHHHHhChHHHHHhCcccccceecCC--CccCCHHHHHHHHHHHHHhc--CCCEEEEeccccccCHHhHHHHH-HHHHH
Confidence 3333322 222110000 023555554 999999999 999999999999 9999999999 77777
Q ss_pred HHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccch
Q 026589 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~~ 181 (236)
+. +++|++++. |.++.... + ..+-|+.++.+++..
T Consensus 511 l~-~~rT~iiIa----HRlsti~~-a---------------D~IiVl~~G~i~e~G 545 (567)
T COG1132 511 LL-KGRTTLIIA----HRLSTIKN-A---------------DRIIVLDNGRIVERG 545 (567)
T ss_pred Hh-cCCEEEEEe----ccHhHHHh-C---------------CEEEEEECCEEEEec
Confidence 75 456766663 77653333 3 466777666655433
No 314
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.84 E-value=3.5e-21 Score=183.70 Aligned_cols=135 Identities=19% Similarity=0.185 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-.++|+|+||||||||+++|+|+++|++|+|.++|.++.. +.+.| +| +-|++|++. +
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i 441 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEM 441 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999987642 34455 33 236787765 3
Q ss_pred HHHHHHhCCCC------CCchhh---hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGP------NGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ .|-... .-..+++|++ ++|||+++. +|+++||||||+ ||+.+...++ +.++++.
T Consensus 442 ~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~--~~~iliLDEpts~LD~~t~~~i~-~~l~~~~ 518 (588)
T PRK13657 442 RAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK--DPPILILDEATSALDVETEAKVK-AALDELM 518 (588)
T ss_pred HHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence 34444444321 110000 0012555543 999999999 999999999999 9999999998 7777764
Q ss_pred hCCCcEEEEEeccccccc
Q 026589 128 SRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~ 145 (236)
.++|+++|. |...
T Consensus 519 -~~~tvIiit----Hr~~ 531 (588)
T PRK13657 519 -KGRTTFIIA----HRLS 531 (588)
T ss_pred -cCCEEEEEE----ecHH
Confidence 467887774 6653
No 315
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.84 E-value=1.7e-20 Score=177.95 Aligned_cols=139 Identities=17% Similarity=0.125 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--C--CCCC-CCCCcCCHHHhhh--------------HHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--A--AENF-DYPVAMDIRELIS--------------LEDVM 63 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~--~--~~~~-~~~~~~~i~~~i~--------------~~~~l 63 (236)
-+++|+||||||||||+++|+|+++|++|+|++.+ +. + .+.. .+.+..++.+++. ..+++
T Consensus 349 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 427 (552)
T TIGR03719 349 GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYV 427 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHH
Confidence 57999999999999999999999999999999843 21 1 1111 1233345555442 34577
Q ss_pred HHhCCCCC-CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEec
Q 026589 64 EELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (236)
Q Consensus 64 ~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~ 139 (236)
+.+++... ... ....+++|++ ++||++++. +|+++||||||+ ||+.++..++ ++++++. + ++++++
T Consensus 428 ~~~~l~~~~~~~--~~~~LSgGe~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-~viivs-- 497 (552)
T TIGR03719 428 GRFNFKGSDQQK--KVGQLSGGERNRVHLAKTLKS--GGNVLLLDEPTNDLDVETLRALE-EALLEFA--G-CAVVIS-- 497 (552)
T ss_pred HhCCCChhHhcC--chhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHCC--C-eEEEEe--
Confidence 88888532 111 1245667654 999999999 999999999999 9999999999 8888772 3 666664
Q ss_pred ccccccchhhHhhhh
Q 026589 140 DSQFITDVTKFISGC 154 (236)
Q Consensus 140 d~~~~~d~~~~~~~~ 154 (236)
|+......+++.+
T Consensus 498 --Hd~~~~~~~~d~i 510 (552)
T TIGR03719 498 --HDRWFLDRIATHI 510 (552)
T ss_pred --CCHHHHHHhCCEE
Confidence 8877777766533
No 316
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.84 E-value=7.3e-21 Score=166.30 Aligned_cols=150 Identities=17% Similarity=0.101 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCCcCCHHHhhh---------HHHHHHHhCCCCC-
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGPN- 71 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~~~- 71 (236)
-+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+++ .++++++. +.+.++.+++.+.
T Consensus 64 e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l 142 (282)
T cd03291 64 EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDI 142 (282)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHH
Confidence 4789999999999999999999999999999987621 0011111122 25555543 1233444444211
Q ss_pred -----Cc---hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecc
Q 026589 72 -----GG---LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (236)
Q Consensus 72 -----~~---~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (236)
+. .......++++++ +.||++++. +|+++|+|||++ ||+.++..+...++++++ ++.+++++.
T Consensus 143 ~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiis--- 216 (282)
T cd03291 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVT--- 216 (282)
T ss_pred HhccccccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEe---
Confidence 00 0000123555543 999999999 999999999999 999999988833556664 467777664
Q ss_pred cccccchhhHhhhhHHHHHHH
Q 026589 141 SQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 141 ~~~~~d~~~~~~~~l~~~~~~ 161 (236)
|..... ..++.+++...+.
T Consensus 217 -H~~~~~-~~~d~i~~l~~G~ 235 (282)
T cd03291 217 -SKMEHL-KKADKILILHEGS 235 (282)
T ss_pred -CChHHH-HhCCEEEEEECCE
Confidence 665543 3454444433333
No 317
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=9.3e-21 Score=179.82 Aligned_cols=142 Identities=18% Similarity=0.069 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CC--CCCCCCCCcCCHHHhhh---------------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENFDYPVAMDIRELIS--------------------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-~~--~~~~~~~~~~~i~~~i~--------------------- 58 (236)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. ++ .+...+.+..++.+++.
T Consensus 34 e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 113 (556)
T PRK11819 34 AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999986421 10 12222223345555542
Q ss_pred -------------------------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEe
Q 026589 59 -------------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFD 105 (236)
Q Consensus 59 -------------------------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllD 105 (236)
+.++++.+|+.. . ......+++|++ +.||++++. +|+++|||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~--~~~~~~LSgGqkqrv~la~al~~--~p~vlLLD 188 (556)
T PRK11819 114 EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-W--DAKVTKLSGGERRRVALCRLLLE--KPDMLLLD 188 (556)
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-c--cCchhhcCHHHHHHHHHHHHHhC--CCCEEEEc
Confidence 223344555532 1 112345767664 999999999 99999999
Q ss_pred CCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 106 EPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
|||+ ||+.++..+. ++++++ +.++++++ |.......+++.++..
T Consensus 189 EPt~~LD~~~~~~l~-~~L~~~---~~tviiis----Hd~~~~~~~~d~i~~l 233 (556)
T PRK11819 189 EPTNHLDAESVAWLE-QFLHDY---PGTVVAVT----HDRYFLDNVAGWILEL 233 (556)
T ss_pred CCCCcCChHHHHHHH-HHHHhC---CCeEEEEe----CCHHHHHhhcCeEEEE
Confidence 9999 9999999888 887776 24776664 8877777766544443
No 318
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.84 E-value=4.4e-21 Score=182.37 Aligned_cols=135 Identities=17% Similarity=0.162 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-.++|+||||||||||+++|+|+++|.+|+|.++|.++.. +.+.| +| +-+++|++. +
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 446 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEV 446 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999977542 34555 33 336777765 3
Q ss_pred HHHHHHhCCCC------CCch---hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGP------NGGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ +|.. ...-..+++|++ ++|||++.. +|+++|+||||+ ||..+.+.++ +.++++.
T Consensus 447 ~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~--~~~ililDEpts~lD~~~~~~i~-~~l~~~~ 523 (576)
T TIGR02204 447 EAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK--DAPILLLDEATSALDAESEQLVQ-QALETLM 523 (576)
T ss_pred HHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCeEEEeCcccccCHHHHHHHH-HHHHHHh
Confidence 34455444421 1100 000123555543 999999999 999999999999 9999999888 7777774
Q ss_pred hCCCcEEEEEeccccccc
Q 026589 128 SRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~ 145 (236)
.+++++++. |...
T Consensus 524 -~~~t~Iiit----H~~~ 536 (576)
T TIGR02204 524 -KGRTTLIIA----HRLA 536 (576)
T ss_pred -CCCEEEEEe----cchH
Confidence 477887774 6653
No 319
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.84 E-value=2.7e-20 Score=179.49 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=119.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~-------~~~~~i~~~i~------ 58 (236)
.+++|+||||||||||+++|+|+++|++|++.++|.++.. ..+.| ++..++.+++.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 114 (648)
T PRK10535 35 EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA 114 (648)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999999999999999999987531 12333 22345555442
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 59 ----------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
+.++++.+++.+..... ...++++++ ++||++++. +|+++|+|||++ ||+.+++.+. +++++
T Consensus 115 ~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LS~Gq~qrv~LAraL~~--~P~lLllDEP~~gLD~~s~~~l~-~ll~~ 189 (648)
T PRK10535 115 GLERKQRLLRAQELLQRLGLEDRVEYQ--PSQLSGGQQQRVSIARALMN--GGQVILADEPTGALDSHSGEEVM-AILHQ 189 (648)
T ss_pred CCCHHHHHHHHHHHHHHCCChhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHH
Confidence 45567778876532211 234555543 999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeec
Q 026589 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (236)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vl 172 (236)
++++|.+++++. |....+ ..++.++....+.+....+.-...
T Consensus 190 l~~~g~tilivs----H~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 190 LRDRGHTVIIVT----HDPQVA-AQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHhcCCEEEEEC----CCHHHH-HhCCEEEEEECCEEEeecCccccc
Confidence 877788887774 776644 457888777777777666664443
No 320
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.83 E-value=5.9e-21 Score=181.25 Aligned_cols=131 Identities=18% Similarity=0.113 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------- 58 (236)
-.++|+|+||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +-++++++.
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 438 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE 438 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHH
Confidence 4689999999999999999999999999999999977532 33555 33 346777764
Q ss_pred HHHHHHHhCCCC------CCch--h-hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 LEDVMEELGLGP------NGGL--I-YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ~~~~l~~~~l~~------~~~~--~-~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++++..|+.+ +|-. . ..-..+++|++ ++|||+++. +|++++|||||+ ||..+...++ +.++++
T Consensus 439 i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~--~~~illLDEpts~LD~~~~~~i~-~~L~~~ 515 (571)
T TIGR02203 439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK--DAPILILDEATSALDNESERLVQ-AALERL 515 (571)
T ss_pred HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHH
Confidence 344555555432 1100 0 00023555544 999999999 999999999999 9999999998 777777
Q ss_pred HhCCCcEEEEE
Q 026589 127 KSRNFNVCAVY 137 (236)
Q Consensus 127 ~~~~~~ii~v~ 137 (236)
. .++++|+|.
T Consensus 516 ~-~~~tiIiit 525 (571)
T TIGR02203 516 M-QGRTTLVIA 525 (571)
T ss_pred h-CCCEEEEEe
Confidence 4 467887774
No 321
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=9.5e-21 Score=182.31 Aligned_cols=149 Identities=13% Similarity=0.107 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec-cCCC--CCC-CC-CCCcCCHHHhh----------hHHHHHHHhC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA--AEN-FD-YPVAMDIRELI----------SLEDVMEELG 67 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~-~d~~--~~~-~~-~~~~~~i~~~i----------~~~~~l~~~~ 67 (236)
-+++|+||||||||||+++|+|.++|++|+|.+.+ ..++ .+. .. ..+..++.+.+ .+.++++.++
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 418 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFG 418 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcC
Confidence 47899999999999999999999999999999853 1111 011 01 11222333322 1567888888
Q ss_pred CCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccc
Q 026589 68 LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (236)
Q Consensus 68 l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~ 144 (236)
+.+... ......+++|.+ ++||++++. +|++|||||||+ ||+.++..+. ++++++ .| +||+|. |+.
T Consensus 419 l~~~~~-~~~~~~LSgGekqRl~La~~l~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~--~g-tvi~vS----Hd~ 487 (638)
T PRK10636 419 FQGDKV-TEETRRFSGGEKARLVLALIVWQ--RPNLLLLDEPTNHLDLDMRQALT-EALIDF--EG-ALVVVS----HDR 487 (638)
T ss_pred CChhHh-cCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-eEEEEe----CCH
Confidence 854211 112345777654 999999999 999999999999 9999999998 888776 24 777764 766
Q ss_pred cchhhHhhhhHHHHHHHH
Q 026589 145 TDVTKFISGCMASLSAMV 162 (236)
Q Consensus 145 ~d~~~~~~~~l~~~~~~i 162 (236)
.....+|+.++....+.+
T Consensus 488 ~~~~~~~d~i~~l~~G~i 505 (638)
T PRK10636 488 HLLRSTTDDLYLVHDGKV 505 (638)
T ss_pred HHHHHhCCEEEEEECCEE
Confidence 666666766665544444
No 322
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.83 E-value=7.3e-21 Score=181.52 Aligned_cols=135 Identities=20% Similarity=0.219 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-++++++. +
T Consensus 362 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~ 441 (585)
T TIGR01192 362 QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEV 441 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999976532 23333 22 336777764 2
Q ss_pred HHHHHHhCCCC------CCc---hhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGP------NGG---LIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~---~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ .+- ....-..+++|++ ++|||+++. +|+++||||||+ ||..+.+.+. +.++++.
T Consensus 442 ~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~--~p~ililDEpts~LD~~~~~~i~-~~l~~~~ 518 (585)
T TIGR01192 442 YEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK--NAPILVLDEATSALDVETEARVK-NAIDALR 518 (585)
T ss_pred HHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHh
Confidence 22333332221 100 0000123555544 899999999 999999999999 9999999998 8888774
Q ss_pred hCCCcEEEEEeccccccc
Q 026589 128 SRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~ 145 (236)
.+.|++++. |...
T Consensus 519 -~~~tvI~is----H~~~ 531 (585)
T TIGR01192 519 -KNRTTFIIA----HRLS 531 (585)
T ss_pred -CCCEEEEEE----cChH
Confidence 478887774 6654
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.83 E-value=1.6e-20 Score=178.07 Aligned_cols=142 Identities=16% Similarity=0.038 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CC--CCCCCCCCcCCHHHhhhH--------------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENFDYPVAMDIRELISL-------------------- 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-~~--~~~~~~~~~~~i~~~i~~-------------------- 59 (236)
-+++|+||||||||||+++|+|+++|++|+|.+++.. ++ .+.....++.++++++..
T Consensus 32 e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
T TIGR03719 32 AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999986421 10 122222234456555431
Q ss_pred --------------------------------HHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEe
Q 026589 60 --------------------------------EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFD 105 (236)
Q Consensus 60 --------------------------------~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllD 105 (236)
.++++.+|+.. . ......+++|++ ++||++++. +|+++|||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~--~~~~~~LSgGqkqrv~la~al~~--~p~lLLLD 186 (552)
T TIGR03719 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-W--DADVTKLSGGERRRVALCRLLLS--KPDMLLLD 186 (552)
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-c--cCchhhcCHHHHHHHHHHHHHhc--CCCEEEEc
Confidence 12333444532 1 112345667655 999999999 99999999
Q ss_pred CCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 106 EPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
|||+ ||+.++..+. ++++++ +.++|++. |.......+++.++..
T Consensus 187 EPt~~LD~~~~~~l~-~~L~~~---~~tvIiis----Hd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 187 EPTNHLDAESVAWLE-QHLQEY---PGTVVAVT----HDRYFLDNVAGWILEL 231 (552)
T ss_pred CCCCCCChHHHHHHH-HHHHhC---CCeEEEEe----CCHHHHHhhcCeEEEE
Confidence 9999 9999999888 777765 34776664 7776666666544433
No 324
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.83 E-value=7.5e-21 Score=180.88 Aligned_cols=135 Identities=17% Similarity=0.142 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| .-++++++. +
T Consensus 342 ~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~ 421 (569)
T PRK10789 342 QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEI 421 (569)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999987532 22333 22 236777764 3
Q ss_pred HHHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ +|-.. ..-..+++|++ ++|||+++. +|+++||||||+ ||+.+...+. +.++++.
T Consensus 422 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~--~~~illlDEpts~LD~~~~~~i~-~~l~~~~ 498 (569)
T PRK10789 422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL--NAEILILDDALSAVDGRTEHQIL-HNLRQWG 498 (569)
T ss_pred HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHHh
Confidence 44555544431 11000 00123555544 899999999 999999999999 9999999999 7788774
Q ss_pred hCCCcEEEEEeccccccc
Q 026589 128 SRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~ 145 (236)
+++|++++. |...
T Consensus 499 -~~~tii~it----H~~~ 511 (569)
T PRK10789 499 -EGRTVIISA----HRLS 511 (569)
T ss_pred -CCCEEEEEe----cchh
Confidence 578887774 6654
No 325
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.83 E-value=1.6e-20 Score=178.24 Aligned_cols=137 Identities=13% Similarity=0.057 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCcC-----CHHHhh-------hHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELI-------SLEDV 62 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~i-------~~~~~ 62 (236)
..++|+||||||||||++.|+|+++|++|+|.++|.++.. ..++| +|+. +++++. .+.++
T Consensus 369 ~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~ 448 (555)
T TIGR01194 369 DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY 448 (555)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHH
Confidence 4689999999999999999999999999999999987643 23444 3321 344332 15667
Q ss_pred HHHhCCCCCCchh----hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEE
Q 026589 63 MEELGLGPNGGLI----YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (236)
Q Consensus 63 l~~~~l~~~~~~~----~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (236)
++.+++.+..... .....+++|++ ++|||+++. +|+++||||||+ ||+.+...+.+.+++.++..++|+++
T Consensus 449 ~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii 526 (555)
T TIGR01194 449 LQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE--DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526 (555)
T ss_pred HHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 8888876431100 00134666654 999999999 999999999999 99999999984466666556888887
Q ss_pred EEeccccccc
Q 026589 136 VYLLDSQFIT 145 (236)
Q Consensus 136 v~l~d~~~~~ 145 (236)
+. |...
T Consensus 527 is----H~~~ 532 (555)
T TIGR01194 527 IS----HDDQ 532 (555)
T ss_pred Ee----ccHH
Confidence 74 6643
No 326
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.83 E-value=2.6e-20 Score=175.55 Aligned_cols=135 Identities=22% Similarity=0.252 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| +-+++|++. +
T Consensus 349 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i 428 (529)
T TIGR02857 349 ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEI 428 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHH
Confidence 4689999999999999999999999999999999987642 23444 22 347888875 4
Q ss_pred HHHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ +|-.. ..-..+++|++ ++|||++.. +|+++||||||+ ||+.+.+.+. +.++++.
T Consensus 429 ~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~--~~~ililDE~ts~lD~~~~~~i~-~~l~~~~ 505 (529)
T TIGR02857 429 RRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR--DAPLLLLDEPTAHLDAETEALVT-EALRALA 505 (529)
T ss_pred HHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHhc
Confidence 45566555532 11000 00123555544 999999999 999999999999 9999999998 7777774
Q ss_pred hCCCcEEEEEeccccccc
Q 026589 128 SRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~ 145 (236)
.++|++++. |...
T Consensus 506 -~~~t~i~it----H~~~ 518 (529)
T TIGR02857 506 -QGRTVLLVT----HRLA 518 (529)
T ss_pred -CCCEEEEEe----cCHH
Confidence 577887774 6653
No 327
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.83 E-value=3.3e-20 Score=178.51 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----CCCC-CCCCcCCHHHhhh--------------HHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENF-DYPVAMDIRELIS--------------LEDVM 63 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~----~~~~-~~~~~~~i~~~i~--------------~~~~l 63 (236)
-+++|+||||||||||+++|+|+++|++|+|.+ |.+.. .+.. .+.+..++.+++. +.+++
T Consensus 346 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 424 (635)
T PRK11147 346 DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYL 424 (635)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHH
Confidence 478999999999999999999999999999998 43321 1111 1233445655542 34556
Q ss_pred HHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecc
Q 026589 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (236)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (236)
+.+++.+.. .......+++|.+ ++||++++. +|++|||||||+ ||+.++..+. ++++++ +.+||+|.
T Consensus 425 ~~~~l~~~~-~~~~~~~LSgGekqRl~la~al~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~vS--- 494 (635)
T PRK11147 425 QDFLFHPKR-AMTPVKALSGGERNRLLLARLFLK--PSNLLILDEPTNDLDVETLELLE-ELLDSY---QGTVLLVS--- 494 (635)
T ss_pred HhcCCCHHH-HhChhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhC---CCeEEEEE---
Confidence 677775321 1112345777655 999999999 999999999999 9999998777 777665 34777764
Q ss_pred cccccchhhHhhhhHHH
Q 026589 141 SQFITDVTKFISGCMAS 157 (236)
Q Consensus 141 ~~~~~d~~~~~~~~l~~ 157 (236)
|+......+++.++..
T Consensus 495 -Hd~~~~~~~~d~i~~l 510 (635)
T PRK11147 495 -HDRQFVDNTVTECWIF 510 (635)
T ss_pred -CCHHHHHHhcCEEEEE
Confidence 6665555666544443
No 328
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.83 E-value=2.3e-20 Score=176.74 Aligned_cols=132 Identities=17% Similarity=0.087 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCcC-----CHHHh---h---hHHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIREL---I---SLEDVM 63 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~---i---~~~~~l 63 (236)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +|+. +++++ . .+.+++
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~ 429 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWL 429 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHH
Confidence 4689999999999999999999999999999999987642 23444 3322 23332 1 256677
Q ss_pred HHhCCCCCCchhh---hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH-HHhCCCcEEEE
Q 026589 64 EELGLGPNGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH-LKSRNFNVCAV 136 (236)
Q Consensus 64 ~~~~l~~~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~-l~~~~~~ii~v 136 (236)
+.++++....... .-..+++|++ ++|||+++. +|+++||||||+ ||+.+...+. +.+.+ +++.+.|++++
T Consensus 430 ~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~--~~~ililDE~ts~LD~~~~~~i~-~~l~~~~~~~~~tvi~i 506 (547)
T PRK10522 430 ERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE--ERDILLLDEWAADQDPHFRREFY-QVLLPLLQEMGKTIFAI 506 (547)
T ss_pred HHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 7887764311100 0023555554 899999999 999999999999 9999999988 55544 43357888777
Q ss_pred E
Q 026589 137 Y 137 (236)
Q Consensus 137 ~ 137 (236)
.
T Consensus 507 t 507 (547)
T PRK10522 507 S 507 (547)
T ss_pred E
Confidence 4
No 329
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.83 E-value=9.4e-21 Score=184.43 Aligned_cols=133 Identities=15% Similarity=0.116 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~ 59 (236)
..++|+||||||||||++.|.|+++|++|+|.++|.+... +.++| +| +-+++|++. +
T Consensus 508 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i 587 (711)
T TIGR00958 508 EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEI 587 (711)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999987642 33444 33 346888875 3
Q ss_pred HHHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 60 EDVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 60 ~~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
.++++..++.+ +|-.. ..-..+++|++ ++|||++.. +|+++||||||+ ||..+.+.+. + .. .
T Consensus 588 ~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~--~p~ILILDEpTSaLD~~te~~i~-~-~~--~ 661 (711)
T TIGR00958 588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR--KPRVLILDEATSALDAECEQLLQ-E-SR--S 661 (711)
T ss_pred HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEEccccccCHHHHHHHH-H-hh--c
Confidence 44555555432 11000 00023555544 999999999 999999999999 9999988777 5 21 2
Q ss_pred hCCCcEEEEEeccccccc
Q 026589 128 SRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~ 145 (236)
..++|+++|. |..+
T Consensus 662 ~~~~TvIiIt----Hrl~ 675 (711)
T TIGR00958 662 RASRTVLLIA----HRLS 675 (711)
T ss_pred cCCCeEEEEe----ccHH
Confidence 3577887774 7654
No 330
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=5.2e-20 Score=149.08 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC----------------CCCCCCcCCHHHhhh--------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE----------------NFDYPVAMDIRELIS-------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~----------------~~~~~~~~~i~~~i~-------- 58 (236)
..++|||.||||||||.|+++|+++|++|+|.++|...... +.++.|.+.|.+.+.
T Consensus 40 QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~ 119 (267)
T COG4167 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTD 119 (267)
T ss_pred cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhccc
Confidence 46899999999999999999999999999999999765321 122222222222221
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.+.++.+||-|.-+..+. +.++.+ +++++||||.. +|+++|.||..+ ||...+.++. ++.-+|
T Consensus 120 ~~~~~R~~~i~~TL~~VGL~Pdhan~~~-~~la~~QKQRVaLARALIL--~P~iIIaDeAl~~LD~smrsQl~-NL~LeL 195 (267)
T COG4167 120 LEPEQRRKQIFETLRMVGLLPDHANYYP-HMLAPGQKQRVALARALIL--RPKIIIADEALASLDMSMRSQLI-NLMLEL 195 (267)
T ss_pred CChHHHHHHHHHHHHHhccCccccccch-hhcCchhHHHHHHHHHHhc--CCcEEEehhhhhhccHHHHHHHH-HHHHHH
Confidence 6778889999887555444 233333 34999999999 999999999998 9999999999 999999
Q ss_pred Hh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccch
Q 026589 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (236)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~~ 181 (236)
++ .|.+-|.|. .++ |+++.=...+-|+..++.++..
T Consensus 196 Qek~GiSyiYV~----Qhl---------------G~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 196 QEKQGISYIYVT----QHI---------------GMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred HHHhCceEEEEe----chh---------------hHhhhhcccEEEEecCceeecC
Confidence 75 587776663 333 3344444677888888888765
No 331
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=4.8e-20 Score=176.30 Aligned_cols=160 Identities=19% Similarity=0.233 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC---CCceEEEeccCCCC-----------CCCCCCCcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA-----------ENFDYPVAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~---~~G~i~i~~~d~~~-----------~~~~~~~~~~i~~~i~---------- 58 (236)
-+.||+||+|||||||+++|+|-... .+|+|.+||..... +.-.+.+.+||+|++.
T Consensus 57 el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~ 136 (613)
T KOG0061|consen 57 ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS 136 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC
Confidence 57899999999999999999999864 78999999954422 2222345678888874
Q ss_pred ---------HHHHHHHhCCCCCCchhhhH---HhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 ---------LEDVMEELGLGPNGGLIYCM---EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 ---------~~~~l~~~~l~~~~~~~~~~---~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
++++++++|+......+..- .-+++|.+ +.+|..++. +|.++++||||+ ||..+..+++ +++
T Consensus 137 ~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~--~P~iLflDEPTSGLDS~sA~~vv-~~L 213 (613)
T KOG0061|consen 137 LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLT--DPSILFLDEPTSGLDSFSALQVV-QLL 213 (613)
T ss_pred CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHc--CCCEEEecCCCCCcchhhHHHHH-HHH
Confidence 89999999998433222110 11333332 999999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
++++++|++||++- | +--.+.-...+.+++...|.....+|.
T Consensus 214 k~lA~~grtVi~tI-H--QPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 214 KRLARSGRTVICTI-H--QPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred HHHHhCCCEEEEEE-e--CCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 99998898887652 1 223455566777777666666555555
No 332
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.1e-20 Score=178.78 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC----CCCC-------CCC-CCc------CCH-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----AAEN-------FDY-PVA------MDI----------- 53 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~----~~~~-------~~~-~~~------~~i----------- 53 (236)
-+++|+||||||||||+|+|+|.++|++|+|.+.|... .... +.| .+. ++.
T Consensus 28 e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 107 (638)
T PRK10636 28 QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDG 107 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCH
Confidence 47899999999999999999999999999999877421 0000 111 000 000
Q ss_pred ------HH---h-------hhHHHHHHHhCCCC-CCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHH
Q 026589 54 ------RE---L-------ISLEDVMEELGLGP-NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (236)
Q Consensus 54 ------~~---~-------i~~~~~l~~~~l~~-~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~ 113 (236)
.. . -.+.++++.+|+.+ .... ....+++|.+ ++||++|+. +|++|||||||+ ||+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~--~~~~LSgGerqRv~LA~aL~~--~P~lLLLDEPtn~LD~~ 183 (638)
T PRK10636 108 HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLER--PVSDFSGGWRMRLNLAQALIC--RSDLLLLDEPTNHLDLD 183 (638)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcC--chhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCCCcCCHH
Confidence 00 0 01456778888863 2111 2355777765 999999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 114 THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 114 ~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
+...+. ++++++ +.+||+|. |+......+|+.++..
T Consensus 184 ~~~~L~-~~L~~~---~~tviivs----Hd~~~l~~~~d~i~~L 219 (638)
T PRK10636 184 AVIWLE-KWLKSY---QGTLILIS----HDRDFLDPIVDKIIHI 219 (638)
T ss_pred HHHHHH-HHHHhC---CCeEEEEe----CCHHHHHHhcCEEEEE
Confidence 998877 776654 45777774 7776666666544443
No 333
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.82 E-value=4.7e-20 Score=168.13 Aligned_cols=158 Identities=22% Similarity=0.253 Sum_probs=118.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCcC-----CHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~i~----------- 58 (236)
-.++||||+|||||||.|.|.|..+|.+|.|.++|-+..+ +.++| ||++ ||.++|.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kI 442 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKV 442 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHH
Confidence 4689999999999999999999999999999999988743 56788 6654 5788875
Q ss_pred --------HHHHHHHhC------CCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 59 --------LEDVMEELG------LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 59 --------~~~~l~~~~------l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
+.|++-.+- +|+.| ..++++++ ..|||++-. +|.+++||||-+ ||-.....+. +
T Consensus 443 ieAA~lAgvHelIl~lP~GYdT~iG~~G------~~LSgGQRQRIaLARAlYG--~P~lvVLDEPNsNLD~~GE~AL~-~ 513 (580)
T COG4618 443 IEAARLAGVHELILRLPQGYDTRIGEGG------ATLSGGQRQRIALARALYG--DPFLVVLDEPNSNLDSEGEAALA-A 513 (580)
T ss_pred HHHHHHcChHHHHHhCcCCccCccCCCC------CCCCchHHHHHHHHHHHcC--CCcEEEecCCCCCcchhHHHHHH-H
Confidence 334443331 22222 23556654 899999988 999999999998 9999999999 8
Q ss_pred HHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccc
Q 026589 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (236)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk 174 (236)
.+...+++|.++++|. |.-+ ...-++.++++.++++..-.|.-+|+.|
T Consensus 514 Ai~~~k~rG~~vvvia----HRPs-~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 514 AILAAKARGGTVVVIA----HRPS-ALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHHHHcCCEEEEEe----cCHH-HHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 8888888888887774 6543 2233455666667776666666555544
No 334
>PLN03140 ABC transporter G family member; Provisional
Probab=99.82 E-value=3.6e-20 Score=190.84 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=115.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccCCCC----CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~--~~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~----------- 58 (236)
-+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..++| .+..|++|++.
T Consensus 907 el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~ 986 (1470)
T PLN03140 907 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV 986 (1470)
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC
Confidence 47899999999999999999999763 68999999976532 22333 23457777653
Q ss_pred --------HHHHHHHhCCCCCCchhhh---HHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026589 59 --------LEDVMEELGLGPNGGLIYC---MEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~---~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~ 124 (236)
++++++.++|.+....... ...++++++ +.||++|+. +|+++++||||+ ||..+...++ ++++
T Consensus 987 ~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~--~P~lL~LDEPTsgLD~~~a~~v~-~~L~ 1063 (1470)
T PLN03140 987 SKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVA--NPSIIFMDEPTSGLDARAAAIVM-RTVR 1063 (1470)
T ss_pred CHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHH
Confidence 4568888888754322211 023555554 999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCcEEEEEeccccccc-chhhHhhhhHHHHH-HHHhhCCC
Q 026589 125 HLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLS-AMVQLELP 167 (236)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~-d~~~~~~~~l~~~~-~~i~~~~p 167 (236)
++++.|.+|+++. |... +....++.+++... |.+....|
T Consensus 1064 ~l~~~g~tVI~t~----Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1064 NTVDTGRTVVCTI----HQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHCCCEEEEEe----CCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 9988888887664 6655 34556676666553 55544444
No 335
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.82 E-value=4.3e-20 Score=177.78 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC--------CCCCCCCC-CCcC----------------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--------PAAENFDY-PVAM---------------------- 51 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d--------~~~~~~~~-~~~~---------------------- 51 (236)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. +......+ ++..
T Consensus 30 e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (635)
T PRK11147 30 ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVE 109 (635)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999987621 00011111 0000
Q ss_pred --CHHHh--------------------hhHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCC
Q 026589 52 --DIREL--------------------ISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCP 107 (236)
Q Consensus 52 --~i~~~--------------------i~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEP 107 (236)
+..++ -.+.++++.+|+..+ .....+++|.+ ++||++|+. +|++||||||
T Consensus 110 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~----~~~~~LSgGekqRv~LAraL~~--~P~lLLLDEP 183 (635)
T PRK11147 110 TDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPD----AALSSLSGGWLRKAALGRALVS--NPDVLLLDEP 183 (635)
T ss_pred cCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCC----CchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence 00000 014566777777532 12356777754 999999999 9999999999
Q ss_pred Cc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHH
Q 026589 108 GQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 108 t~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
|+ ||+.++..+. ++++++ +.+||+|+ |.......+|+.++..
T Consensus 184 t~~LD~~~~~~L~-~~L~~~---~~tvlivs----Hd~~~l~~~~d~i~~L 226 (635)
T PRK11147 184 TNHLDIETIEWLE-GFLKTF---QGSIIFIS----HDRSFIRNMATRIVDL 226 (635)
T ss_pred CCccCHHHHHHHH-HHHHhC---CCEEEEEe----CCHHHHHHhcCeEEEE
Confidence 99 9999999888 887776 24777664 7766666666544433
No 336
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.82 E-value=3.9e-20 Score=190.53 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=113.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC---CCCceEEEeccCCCC---CCCCC-C------CcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA---ENFDY-P------VAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~---~~~G~i~i~~~d~~~---~~~~~-~------~~~~i~~~i~----------- 58 (236)
.+++|+||||||||||+++|+|..+ +++|+|.++|.+... +.++| + +..+++|++.
T Consensus 790 e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 790 TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 4789999999999999999999987 688999999987632 23344 2 2356777654
Q ss_pred --------HHHHHHHhCCCCCCchhhh--HHhhhhcHH--HHHHHHHhcCCCCC-EEEEeCCCc-ccHHhHHHHHHHHHH
Q 026589 59 --------LEDVMEELGLGPNGGLIYC--MEHLEDNLD--DWLAEELDNYLDDD-YLVFDCPGQ-IELFTHVPVLRNFVD 124 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~--~~~~~~~~s--~~la~~l~~~~~p~-~lllDEPt~-LD~~~~~~~~~~ll~ 124 (236)
++++++.+++.+....... ...++++++ +.||++++. +|+ +|+|||||+ ||..+...++ ++++
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~--~P~~iLlLDEPTsgLD~~~~~~i~-~~L~ 946 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA--KPKLLLFLDEPTSGLDSQTAWSIC-KLMR 946 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc--CCCeEEEEcCCCCCCCHHHHHHHH-HHHH
Confidence 4567888888754322211 013455544 999999999 997 999999999 9999999999 9999
Q ss_pred HHHhCCCcEEEEEecccccccc-hhhHhhhhHHHHHH-HHhhC
Q 026589 125 HLKSRNFNVCAVYLLDSQFITD-VTKFISGCMASLSA-MVQLE 165 (236)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d-~~~~~~~~l~~~~~-~i~~~ 165 (236)
+++++|.+|+++. |.... ....++.+++...+ .+...
T Consensus 947 ~la~~g~tvI~t~----H~~~~~~~~~~D~vl~L~~GG~iv~~ 985 (1394)
T TIGR00956 947 KLADHGQAILCTI----HQPSAILFEEFDRLLLLQKGGQTVYF 985 (1394)
T ss_pred HHHHcCCEEEEEe----cCCCHHHHHhcCEEEEEcCCCEEEEE
Confidence 9987788887764 66553 23445666555544 44433
No 337
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.82 E-value=4.8e-20 Score=182.86 Aligned_cols=153 Identities=16% Similarity=0.232 Sum_probs=126.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CC------cCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~-~~------~~~i~~~i~--------- 58 (236)
-|.|+.|||||||||+++++.|..+|++|++++.|.+... +.++| || .+|.||.+.
T Consensus 592 ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~ 671 (885)
T KOG0059|consen 592 ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLP 671 (885)
T ss_pred ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999999999999988743 34777 55 356666653
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 59 -------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++..++.++|.+.+... ...+++|.+ ..+|.+++. +|++++||||++ +||.+++.++ ++++++++
T Consensus 672 ~~di~~~v~~ll~~~~L~~~~~~~--~~~ySgG~kRkLs~aialig--~p~vi~LDEPstGmDP~arr~lW-~ii~~~~k 746 (885)
T KOG0059|consen 672 RSDIGSAIEKLLRLVGLGPYANKQ--VRTYSGGNKRRLSFAIALIG--DPSVILLDEPSTGLDPKARRHLW-DIIARLRK 746 (885)
T ss_pred hhHHHHHHHHHHHHcCChhhhccc--hhhCCCcchhhHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-HHHHHHHh
Confidence 67788889998876554 344666654 788888888 999999999999 9999999999 99999988
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhh
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~ 164 (236)
+|+.++.+ +|.+++.+..|+++-.+..|+++.
T Consensus 747 ~g~aiiLT----SHsMeE~EaLCtR~aImv~G~l~c 778 (885)
T KOG0059|consen 747 NGKAIILT----SHSMEEAEALCTRTAIMVIGQLRC 778 (885)
T ss_pred cCCEEEEE----cCCHHHHHHHhhhhheeecCeeEE
Confidence 77666555 599999999999998887777754
No 338
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=7.5e-20 Score=149.31 Aligned_cols=158 Identities=16% Similarity=0.303 Sum_probs=115.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec-cCCCC--------CCC-------CCCCcCCHHHhhh---------
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPAA--------ENF-------DYPVAMDIRELIS--------- 58 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~-~d~~~--------~~~-------~~~~~~~i~~~i~--------- 58 (236)
.-+||||||+||||++-+|+|--+|+.|+|++.| .|+.. ..+ ..+.+.++++++.
T Consensus 33 lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v 112 (249)
T COG4674 33 LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV 112 (249)
T ss_pred EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcch
Confidence 4579999999999999999999999999999999 66532 111 1234667777764
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHH
Q 026589 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (236)
Q Consensus 59 ---------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~l 122 (236)
++++++..||++..... ...++.++..||...++...+|++|++|||.+ +--....... ++
T Consensus 113 ~a~L~~r~~~~e~~ride~La~igL~~~~~~~--A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eL 189 (249)
T COG4674 113 FASLFARLRAEERRRIDELLATIGLGDERDRL--AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-EL 189 (249)
T ss_pred HHHhhhhcChhHHHHHHHHHHHcccchhhhhh--hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HH
Confidence 88899999999876544 33566666666655444333999999999999 7776677778 89
Q ss_pred HHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccchhhhh
Q 026589 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIE 185 (236)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~~~~l~ 185 (236)
++.+++ +++|++|- ||..++. .+. .++.|+..+..+... .++
T Consensus 190 l~~la~-~hsilVVE-HDM~Fvr---~~A---------------~~VTVlh~G~VL~EG-sld 231 (249)
T COG4674 190 LKSLAG-KHSILVVE-HDMGFVR---EIA---------------DKVTVLHEGSVLAEG-SLD 231 (249)
T ss_pred HHHHhc-CceEEEEe-ccHHHHH---Hhh---------------heeEEEeccceeecc-cHH
Confidence 999964 56776663 5555543 332 378889888888765 454
No 339
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.2e-20 Score=170.21 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=100.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------HH
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~ 60 (236)
-++|+|++||||||+++.+.|.+.|++|+|..+|.+++. +.+.+ +| +-|+|+++. +.
T Consensus 366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~ 445 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELW 445 (573)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 479999999999999999999999999999999987753 12322 22 225777764 55
Q ss_pred HHHHHhCCCCCC-----chhhhH----HhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 61 DVMEELGLGPNG-----GLIYCM----EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 61 ~~l~~~~l~~~~-----~~~~~~----~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++++||.... +....+ +.+++|.+ .+|||++.. +.+++||||||. ||+.+.++++ +++.+-.
T Consensus 446 ~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~--dapl~lLDEPTegLD~~TE~~vL-~ll~~~~- 521 (573)
T COG4987 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH--DAPLWLLDEPTEGLDPITERQVL-ALLFEHA- 521 (573)
T ss_pred HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc--CCCeEEecCCcccCChhhHHHHH-HHHHHHh-
Confidence 566666664311 000011 23444432 999999999 999999999998 9999999999 6655543
Q ss_pred CCCcEEEEEecccccccchhh
Q 026589 129 RNFNVCAVYLLDSQFITDVTK 149 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~ 149 (236)
+|+|+++|+ |+....+.
T Consensus 522 ~~kTll~vT----HrL~~le~ 538 (573)
T COG4987 522 EGKTLLMVT----HRLRGLER 538 (573)
T ss_pred cCCeEEEEe----cccccHhh
Confidence 489999886 88765544
No 340
>PLN03232 ABC transporter C family member; Provisional
Probab=99.81 E-value=4.2e-20 Score=191.64 Aligned_cols=138 Identities=19% Similarity=0.173 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCc-----CCHHHhhh---------HH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~---------~~ 60 (236)
..+||+||+|||||||+++|.|+++|++|+|.++|.|+.. ..+++ +|+ -|+|+++. +.
T Consensus 1263 ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~ 1342 (1495)
T PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLW 1342 (1495)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHH
Confidence 4689999999999999999999999999999999998753 33444 442 37888875 45
Q ss_pred HHHHHhCCCC------CCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 61 DVMEELGLGP------NGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 61 ~~l~~~~l~~------~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++..++.+ .|-.. ..-..+++|++ ++||||++. +|++|||||||+ +|..+.+.+. +.+++..
T Consensus 1343 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr--~~~ILILDEATSaLD~~Te~~Iq-~~L~~~~- 1418 (1495)
T PLN03232 1343 EALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR--RSKILVLDEATASVDVRTDSLIQ-RTIREEF- 1418 (1495)
T ss_pred HHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-
Confidence 5666655532 11000 00023555554 899999999 999999999999 9999998888 7777763
Q ss_pred CCCcEEEEEecccccccchh
Q 026589 129 RNFNVCAVYLLDSQFITDVT 148 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~ 148 (236)
+++|+++|. |.++...
T Consensus 1419 ~~~TvI~IA----HRl~ti~ 1434 (1495)
T PLN03232 1419 KSCTMLVIA----HRLNTII 1434 (1495)
T ss_pred CCCEEEEEe----CCHHHHH
Confidence 478888774 7765433
No 341
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=4.4e-20 Score=182.83 Aligned_cols=145 Identities=20% Similarity=0.243 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CCcCCHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~------~~~~~i~~~i~----------~ 59 (236)
..++++||+||||||+++.|.+++.|++|+|.++|.|... ..++. ..+.+|+|++. +
T Consensus 380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i 459 (1228)
T KOG0055|consen 380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEI 459 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHH
Confidence 5789999999999999999999999999999999988753 12222 11346777765 2
Q ss_pred HHHHHHh-----------C----CCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 60 EDVMEEL-----------G----LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 60 ~~~l~~~-----------~----l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
.++.+.. | .++.| -.+++|++ ++|||+++. +|++|||||||+ ||+.+.+.+. +
T Consensus 460 ~~a~k~ana~~fi~~lp~g~~T~vge~g------~qLSGGQKQRIAIARalv~--~P~ILLLDEaTSaLD~~se~~Vq-~ 530 (1228)
T KOG0055|consen 460 EEAAKAANAHDFILKLPDGYDTLVGERG------VQLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESERVVQ-E 530 (1228)
T ss_pred HHHHHHccHHHHHHhhHHhhcccccCCC------CCCChHHHHHHHHHHHHHh--CCCEEEecCcccccCHHHHHHHH-H
Confidence 2232211 1 12222 12556554 999999999 999999999999 9999998888 8
Q ss_pred HHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHH
Q 026589 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (236)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i 162 (236)
.+++..+ |+|.++|. |.++.... ++.+.+...|.+
T Consensus 531 ALd~~~~-grTTivVa----HRLStIrn-aD~I~v~~~G~I 565 (1228)
T KOG0055|consen 531 ALDKASK-GRTTIVVA----HRLSTIRN-ADKIAVMEEGKI 565 (1228)
T ss_pred HHHHhhc-CCeEEEEe----eehhhhhc-cCEEEEEECCEE
Confidence 8888754 66666663 77665554 444444444443
No 342
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=4.3e-20 Score=169.57 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCcC-----CHHHhhh----------HH
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS----------LE 60 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~i~----------~~ 60 (236)
-+||+|+|||||||++|+|.+++. .+|+|+++|.|+.. +.++| ||+- ||..++. +.
T Consensus 380 kVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~ 458 (591)
T KOG0057|consen 380 KVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVV 458 (591)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHH
Confidence 489999999999999999999999 99999999998743 44666 5532 4555553 55
Q ss_pred HHHHHhCCCC------CCch---hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 61 DVMEELGLGP------NGGL---IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 61 ~~l~~~~l~~------~~~~---~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++.+++++.+ .|-. -.+...+++|.+ ++++|+++. +|+++++||||+ ||..+.++++ +.+... .
T Consensus 459 e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK--da~Il~~DEaTS~LD~~TE~~i~-~~i~~~-~ 534 (591)
T KOG0057|consen 459 EACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK--DAPILLLDEATSALDSETEREIL-DMIMDV-M 534 (591)
T ss_pred HHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc--CCCeEEecCcccccchhhHHHHH-HHHHHh-c
Confidence 5566666543 1100 001123555533 999999999 999999999999 9999999999 656553 3
Q ss_pred CCCcEEEE
Q 026589 129 RNFNVCAV 136 (236)
Q Consensus 129 ~~~~ii~v 136 (236)
.++|+|+|
T Consensus 535 ~~rTvI~I 542 (591)
T KOG0057|consen 535 SGRTVIMI 542 (591)
T ss_pred CCCeEEEE
Confidence 57788776
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=99.80 E-value=6.4e-20 Score=178.11 Aligned_cols=137 Identities=16% Similarity=0.123 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-CC----cCCHHHh--------------hhHHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PV----AMDIREL--------------ISLEDVM 63 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-~~----~~~i~~~--------------i~~~~~l 63 (236)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. .++| +| ..++.++ -.+.+++
T Consensus 536 e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~----~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L 611 (718)
T PLN03073 536 SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV----RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL 611 (718)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce----eEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHH
Confidence 4789999999999999999999999999999875421 1111 11 0111110 1256788
Q ss_pred HHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecc
Q 026589 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (236)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (236)
+.+++.+..... ....+++|++ ++||++++. +|++|||||||+ ||+.++..+. +.+++. .+ +++++.
T Consensus 612 ~~~gl~~~~~~~-~~~~LSgGqkqRvaLAraL~~--~p~lLLLDEPT~~LD~~s~~~l~-~~L~~~--~g-tvIivS--- 681 (718)
T PLN03073 612 GSFGVTGNLALQ-PMYTLSGGQKSRVAFAKITFK--KPHILLLDEPSNHLDLDAVEALI-QGLVLF--QG-GVLMVS--- 681 (718)
T ss_pred HHCCCChHHhcC-CccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-EEEEEE---
Confidence 888886421111 1245666654 999999999 999999999999 9999998877 555543 34 777664
Q ss_pred cccccchhhHhhhh
Q 026589 141 SQFITDVTKFISGC 154 (236)
Q Consensus 141 ~~~~~d~~~~~~~~ 154 (236)
|.......+|+.+
T Consensus 682 -Hd~~~i~~~~drv 694 (718)
T PLN03073 682 -HDEHLISGSVDEL 694 (718)
T ss_pred -CCHHHHHHhCCEE
Confidence 7766666666533
No 344
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.1e-19 Score=147.57 Aligned_cols=158 Identities=20% Similarity=0.296 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCC--------C----CCCCCCc---CCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------E----NFDYPVA---MDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~--l~~~~G~i~i~~~d~~~--------~----~~~~~~~---~~i~~~i~------- 58 (236)
.+.+|+||||||||||.++|+|+ +++++|+|.++|.|+.. . .++||+. +++.+++.
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~ 110 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARR 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhh
Confidence 57899999999999999999998 47899999999998743 1 1334432 23333322
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHH
Q 026589 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (236)
Q Consensus 59 ------------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll 123 (236)
+++.++.+++.+.-..++.-+-++++-+ ..|...++. +|++.|||||-+ ||..+-+.+. +-+
T Consensus 111 ~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l--ePkl~ILDE~DSGLDIdalk~V~-~~i 187 (251)
T COG0396 111 GARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL--EPKLAILDEPDSGLDIDALKIVA-EGI 187 (251)
T ss_pred ccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc--CCCEEEecCCCcCccHHHHHHHH-HHH
Confidence 5677888888873222222122333322 788888888 999999999999 9999998888 999
Q ss_pred HHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccch
Q 026589 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (236)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~~ 181 (236)
+++++.|.++++++ |+-. ...|+ .-..+.|+-.+-.+.+.
T Consensus 188 ~~lr~~~~~~liIT----Hy~r-ll~~i-------------~pD~vhvl~~GrIv~sG 227 (251)
T COG0396 188 NALREEGRGVLIIT----HYQR-LLDYI-------------KPDKVHVLYDGRIVKSG 227 (251)
T ss_pred HHHhcCCCeEEEEe----cHHH-HHhhc-------------CCCEEEEEECCEEEecC
Confidence 99988888888774 5421 22222 12467777777776654
No 345
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=6e-19 Score=141.00 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------- 58 (236)
-.++|+||+|||||||+|+++.++.|++|.+++.|.+... +.++| .| .-+|.|++-
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~d 109 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPD 109 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCC
Confidence 3578999999999999999999999999999999988743 22333 11 114555442
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHhhhhcH--HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCC
Q 026589 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNF 131 (236)
Q Consensus 59 ---~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~-~~~~ 131 (236)
..+.+++++++..--.. ....+++|- +.+|+|.|.. -|++|+|||||+ ||+.+.+.+- +++.++. .++.
T Consensus 110 r~aa~~llar~~l~~~~L~k-~it~lSGGE~QriAliR~Lq~--~P~ILLLDE~TsALD~~nkr~ie-~mi~~~v~~q~v 185 (223)
T COG4619 110 RAAALDLLARFALPDSILTK-NITELSGGEKQRIALIRNLQF--MPKILLLDEITSALDESNKRNIE-EMIHRYVREQNV 185 (223)
T ss_pred hHHHHHHHHHcCCchhhhcc-hhhhccchHHHHHHHHHHhhc--CCceEEecCchhhcChhhHHHHH-HHHHHHhhhhce
Confidence 67788999988642111 123455543 3899999998 999999999999 9999999998 7777776 5688
Q ss_pred cEEEEE
Q 026589 132 NVCAVY 137 (236)
Q Consensus 132 ~ii~v~ 137 (236)
.++.|+
T Consensus 186 Av~WiT 191 (223)
T COG4619 186 AVLWIT 191 (223)
T ss_pred EEEEEe
Confidence 888885
No 346
>PLN03130 ABC transporter C family member; Provisional
Probab=99.80 E-value=9.6e-20 Score=189.63 Aligned_cols=162 Identities=19% Similarity=0.149 Sum_probs=116.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCc-----CCHHHhhh---------HH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~---------~~ 60 (236)
-.+||+|++|||||||+++|.|+++|++|+|.++|.|+.. ..+++ +|+ -|+|+++. +.
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~ 1345 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLW 1345 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHH
Confidence 4689999999999999999999999999999999998753 34444 442 36888875 45
Q ss_pred HHHHHhCCCC------CCch--h-hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 61 DVMEELGLGP------NGGL--I-YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 61 ~~l~~~~l~~------~~~~--~-~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++..++.+ .|-. + ..-..+++|++ ++||||++. +|++|||||||+ +|..+...+. +.+++..
T Consensus 1346 ~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr--~p~ILILDEATSaLD~~Te~~Iq-~~I~~~~- 1421 (1622)
T PLN03130 1346 ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR--RSKILVLDEATAAVDVRTDALIQ-KTIREEF- 1421 (1622)
T ss_pred HHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHC-
Confidence 5566555431 1100 0 00013555544 999999999 999999999999 9999998888 8888764
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecc
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vls 173 (236)
+++|+++|. |.++.... ++++++...|.+.-.++|-+.++
T Consensus 1422 ~~~TvI~IA----HRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1422 KSCTMLIIA----HRLNTIID-CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCCEEEEEe----CChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 478888774 77765544 56666666666655555544443
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.80 E-value=1.5e-19 Score=186.32 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=115.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC----CCCCceEEEeccCCCC------CCCCC-C------CcCCHHHhhh-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNLDPAA------ENFDY-P------VAMDIRELIS------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l----~~~~G~i~i~~~d~~~------~~~~~-~------~~~~i~~~i~------- 58 (236)
-+++|+||||||||||+|+|+|.. +|.+|+|.++|.++.. ..++| + +.++++|++.
T Consensus 88 e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 167 (1394)
T TIGR00956 88 ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKT 167 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCC
Confidence 578999999999999999999986 5789999999976521 12334 2 2456666542
Q ss_pred -----------------HHHHHHHhCCCCCCchhh---hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhH
Q 026589 59 -----------------LEDVMEELGLGPNGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (236)
Q Consensus 59 -----------------~~~~l~~~~l~~~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~ 115 (236)
.+++++.+||.+...... ....+++|.+ +.||++++. +|+++++||||+ ||..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--~p~vlllDEPTsgLD~~~~ 245 (1394)
T TIGR00956 168 PQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--GAKIQCWDNATRGLDSATA 245 (1394)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh--CCCEEEEeCCCCCcCHHHH
Confidence 134677788875432211 0123555543 999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHh-CCCcEEEEEecccccc-cchhhHhhhhHHHHHHHHhhCCCe
Q 026589 116 VPVLRNFVDHLKS-RNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 116 ~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~-~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
..++ ++++++++ .|.+++++. |.. .+...+++.+++...|.+....|.
T Consensus 246 ~~i~-~~L~~la~~~g~tvii~~----Hq~~~~i~~l~D~v~~L~~G~iv~~G~~ 295 (1394)
T TIGR00956 246 LEFI-RALKTSANILDTTPLVAI----YQCSQDAYELFDKVIVLYEGYQIYFGPA 295 (1394)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEe----cCCCHHHHHhhceEEEEeCCeEEEECCH
Confidence 9999 99999986 488877663 553 456667777777666666555444
No 348
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.80 E-value=1.3e-19 Score=187.23 Aligned_cols=136 Identities=18% Similarity=0.169 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC------------------------------------------------------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET------------------------------------------------------ 28 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~------------------------------------------------------ 28 (236)
-.++|+||+||||||+++.|.|++.|
T Consensus 1195 ~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1274 (1466)
T PTZ00265 1195 KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFK 1274 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 57899999999999999999999998
Q ss_pred CCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------HHHHHHHhCCCC------CCchh---h
Q 026589 29 VRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LEDVMEELGLGP------NGGLI---Y 76 (236)
Q Consensus 29 ~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~----------~~~~l~~~~l~~------~~~~~---~ 76 (236)
++|+|.++|.|+.. +.++| +| +-||+|++. ++++++..++.. +|-.- .
T Consensus 1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe 1354 (1466)
T PTZ00265 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGP 1354 (1466)
T ss_pred CCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCC
Confidence 69999999988742 34555 44 347888875 445555544321 11000 0
Q ss_pred hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCcEEEEEeccccccc
Q 026589 77 CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 77 ~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~~ 145 (236)
.-..+++|++ ++|||||+. +|++|||||||+ ||..+.+.+. +.+.++. .+++|+|+|. |.++
T Consensus 1355 ~G~~LSGGQkQRIaIARALlr--~p~ILLLDEaTSaLD~~sE~~I~-~~L~~~~~~~~~TvIiIa----HRls 1420 (1466)
T PTZ00265 1355 YGKSLSGGQKQRIAIARALLR--EPKILLLDEATSSLDSNSEKLIE-KTIVDIKDKADKTIITIA----HRIA 1420 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhccCCCEEEEEe----chHH
Confidence 0023566654 999999999 999999999999 9999999888 7788875 3578888774 7754
No 349
>PLN03140 ABC transporter G family member; Provisional
Probab=99.79 E-value=1.9e-19 Score=185.60 Aligned_cols=162 Identities=14% Similarity=0.150 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCCC----CCCCC-------CCcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~---~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~---------- 58 (236)
-+++|+||||||||||+++|+|.++|+ +|+|.++|.+... ..++| .+.+|++|++.
T Consensus 192 e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~ 271 (1470)
T PLN03140 192 RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGT 271 (1470)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCC
Confidence 478999999999999999999999998 9999999986532 22333 22456666553
Q ss_pred ----------------------------------------HHHHHHHhCCCCCCchh---hhHHhhhhcHH--HHHHHHH
Q 026589 59 ----------------------------------------LEDVMEELGLGPNGGLI---YCMEHLEDNLD--DWLAEEL 93 (236)
Q Consensus 59 ----------------------------------------~~~~l~~~~l~~~~~~~---~~~~~~~~~~s--~~la~~l 93 (236)
++++++.+||....... .....+++|.+ +.||+++
T Consensus 272 ~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL 351 (1470)
T PLN03140 272 RYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMI 351 (1470)
T ss_pred cccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhh
Confidence 13466677876432110 01123555554 9999999
Q ss_pred hcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEecccccc-cchhhHhhhhHHHHHHHHhhCCCeee
Q 026589 94 DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVN 170 (236)
Q Consensus 94 ~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~-~d~~~~~~~~l~~~~~~i~~~~p~i~ 170 (236)
+. +|+++++||||+ ||..+..+++ +.++++++ .|.|++++. |.. .+...+++.+++...|.+....|.-+
T Consensus 352 ~~--~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis~----Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~ 424 (1470)
T PLN03140 352 VG--PTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMSL----LQPAPETFDLFDDIILLSEGQIVYQGPRDH 424 (1470)
T ss_pred cC--CCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEEe----cCCCHHHHHHhheEEEeeCceEEEeCCHHH
Confidence 99 999999999999 9999999999 99999976 578887664 543 45667788787777777766666544
Q ss_pred e
Q 026589 171 I 171 (236)
Q Consensus 171 v 171 (236)
+
T Consensus 425 ~ 425 (1470)
T PLN03140 425 I 425 (1470)
T ss_pred H
Confidence 4
No 350
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.79 E-value=1.4e-19 Score=140.85 Aligned_cols=105 Identities=25% Similarity=0.270 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CCcCCHHHhh---hHHHHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELI---SLEDVMEE 65 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-------~~~~~i~~~i---~~~~~l~~ 65 (236)
-+++|+||||||||||+++|+|..+|++|+|.++|.++.. ..+.| ....+++++. .++++++.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l~~ 91 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEVLKK 91 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHHHHH
T ss_pred CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5789999999999999999999999999999999987643 22333 2244566653 37778888
Q ss_pred hCCCCCCchhh--hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc
Q 026589 66 LGLGPNGGLIY--CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ 109 (236)
Q Consensus 66 ~~l~~~~~~~~--~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~ 109 (236)
+++........ ....++++.+ ++||++++. +|+++|+||||+
T Consensus 92 l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~--~~~llllDEPt~ 137 (137)
T PF00005_consen 92 LGLEDLLDRKIGQRASSLSGGEKQRLALARALLK--NPKLLLLDEPTN 137 (137)
T ss_dssp TTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT--TSSEEEEESTTT
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHc--CCCEEEEeCCCC
Confidence 88765222211 1144555544 999999999 999999999996
No 351
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.5e-19 Score=169.23 Aligned_cols=150 Identities=20% Similarity=0.275 Sum_probs=108.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh----------
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------- 58 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------- 58 (236)
+.++|++|||||||||+.+.|..++.|++|+|.++|.|+.. ..+++ .| .-+|+|+|.
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~ 573 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEE 573 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHH
Confidence 35799999999999999999999999999999999998753 22333 11 235777764
Q ss_pred ---------HHHHHHHh------CCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 ---------LEDVMEEL------GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 ---------~~~~l~~~------~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.+.+..+ ..|+.| -.+++|++ .+|||||.. +|.+|||||.|+ ||..+...+-
T Consensus 574 i~~AAk~ANah~FI~~~p~gY~T~VGEkG------~qLSGGQKQRIAIARALlr--~P~VLILDEATSALDaeSE~lVq- 644 (716)
T KOG0058|consen 574 IEAAAKMANAHEFITNFPDGYNTVVGEKG------SQLSGGQKQRIAIARALLR--NPRVLILDEATSALDAESEYLVQ- 644 (716)
T ss_pred HHHHHHHhChHHHHHhCccccccccCCcc------ccccchHHHHHHHHHHHhc--CCCEEEEechhhhcchhhHHHHH-
Confidence 22222222 123333 23566654 999999999 999999999999 9999987777
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccch
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~~ 181 (236)
+.+.++.+ ++||+++. |.++.+.. -.+|.|+.|+-+.+..
T Consensus 645 ~aL~~~~~-~rTVlvIA----HRLSTV~~----------------Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 645 EALDRLMQ-GRTVLVIA----HRLSTVRH----------------ADQIVVIDKGRVVEMG 684 (716)
T ss_pred HHHHHhhc-CCeEEEEe----hhhhHhhh----------------ccEEEEEcCCeEEecc
Confidence 88888755 57887774 76653332 1377888888777654
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.79 E-value=2.5e-19 Score=186.19 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCc-----CCHHHhhh---------HH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~---------~~ 60 (236)
-.+||+|++|||||||+++|.|+++|++|+|.++|.|+.. ..+++ +|+ -|+|+++. +.
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~ 1392 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1392 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHH
Confidence 4689999999999999999999999999999999998753 34554 442 36888875 44
Q ss_pred HHHHHhCCCCC-----CchhhhH----HhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 61 DVMEELGLGPN-----GGLIYCM----EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 61 ~~l~~~~l~~~-----~~~~~~~----~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++..++.+. .+..... ..+++|++ ++||||++. +|++|||||||+ +|..+...+. +.+++..
T Consensus 1393 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr--~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~- 1468 (1522)
T TIGR00957 1393 WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR--KTKILVLDEATAAVDLETDNLIQ-STIRTQF- 1468 (1522)
T ss_pred HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-
Confidence 56666555321 0010000 23555544 999999999 999999999999 9999998887 8777763
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccc
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~ 180 (236)
+++|+++|. |.+..... ...|-|+.++.+++.
T Consensus 1469 ~~~TvI~IA----HRl~ti~~----------------~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1469 EDCTVLTIA----HRLNTIMD----------------YTRVIVLDKGEVAEF 1500 (1522)
T ss_pred CCCEEEEEe----cCHHHHHh----------------CCEEEEEECCEEEEE
Confidence 478888774 77643322 356677777666543
No 353
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.79 E-value=4.1e-19 Score=183.48 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe-ccCCCC-------CCCCC-CCc-----CCHHHhhhH---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLDPAA-------ENFDY-PVA-----MDIRELISL--------- 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~-~~d~~~-------~~~~~-~~~-----~~i~~~i~~--------- 59 (236)
.+++|+||||||||||+++|+|+++|++|+|.++ |.++.. +.++| +|+ .++++++..
T Consensus 412 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~ 491 (1466)
T PTZ00265 412 KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLE 491 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccc
Confidence 4789999999999999999999999999999995 555421 23444 332 256665542
Q ss_pred ----------------------------------------------------------HHHHHHhCCCCC------Cch-
Q 026589 60 ----------------------------------------------------------EDVMEELGLGPN------GGL- 74 (236)
Q Consensus 60 ----------------------------------------------------------~~~l~~~~l~~~------~~~- 74 (236)
.++++..++.+. +-.
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT 571 (1466)
T PTZ00265 492 ALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYET 571 (1466)
T ss_pred hhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCc
Confidence 223333333211 000
Q ss_pred --hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEecccccccchh
Q 026589 75 --IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVT 148 (236)
Q Consensus 75 --~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~ 148 (236)
-.....+++|++ ++||||++. +|++|||||||+ ||+.+...+. +.++++++ .|.|+|++. |.+...
T Consensus 572 ~vg~~g~~LSGGQkQRiaIARAll~--~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~TvIiIs----Hrls~i- 643 (1466)
T PTZ00265 572 LVGSNASKLSGGQKQRISIARAIIR--NPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRITIIIA----HRLSTI- 643 (1466)
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCEEEEEe----CCHHHH-
Confidence 000123555544 999999999 999999999999 9999999998 88898865 588887774 777654
Q ss_pred hHhhhhHHHHHH
Q 026589 149 KFISGCMASLSA 160 (236)
Q Consensus 149 ~~~~~~l~~~~~ 160 (236)
+.++.+++...|
T Consensus 644 ~~aD~Iivl~~g 655 (1466)
T PTZ00265 644 RYANTIFVLSNR 655 (1466)
T ss_pred HhCCEEEEEeCC
Confidence 567666665543
No 354
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.78 E-value=1.1e-18 Score=168.62 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-C--CCCCCCCCcCCHHHhhh-----------------HHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-A--AENFDYPVAMDIRELIS-----------------LEDV 62 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~-~--~~~~~~~~~~~i~~~i~-----------------~~~~ 62 (236)
..++|+||||||||||+++|+|+++|++|+|.+++..- + .+...+++. ++++++. +.++
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~ 557 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQI 557 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHH
Confidence 46899999999999999999999999999998764210 0 111111222 5555542 3466
Q ss_pred HHHhCCCCCCchhh-------hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCc
Q 026589 63 MEELGLGPNGGLIY-------CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (236)
Q Consensus 63 l~~~~l~~~~~~~~-------~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (236)
++.+++.+...... ....+++|++ ++|||+++. +|+++||||||+ ||+.+...+. +.+++ .|.+
T Consensus 558 l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~--~p~illLDEpts~LD~~~~~~l~-~~l~~---~~~t 631 (659)
T TIGR00954 558 LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH--KPQFAILDECTSAVSVDVEGYMY-RLCRE---FGIT 631 (659)
T ss_pred HHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHH---cCCE
Confidence 77777764321100 0124556554 999999999 999999999999 9999998877 66554 4778
Q ss_pred EEEEEecccccccchhhHhh
Q 026589 133 VCAVYLLDSQFITDVTKFIS 152 (236)
Q Consensus 133 ii~v~l~d~~~~~d~~~~~~ 152 (236)
++++. |..... ++++
T Consensus 632 vI~is----H~~~~~-~~~d 646 (659)
T TIGR00954 632 LFSVS----HRKSLW-KYHE 646 (659)
T ss_pred EEEEe----CchHHH-HhCC
Confidence 87774 766543 4454
No 355
>PTZ00243 ABC transporter; Provisional
Probab=99.78 E-value=4.4e-18 Score=176.91 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh---------HH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~---------~~ 60 (236)
-.+||+|++|||||||+++|.|+++|++|+|.++|.|+.. +.+++ +| +-|||++++ +.
T Consensus 1337 ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~ 1416 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVW 1416 (1560)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHH
Confidence 4689999999999999999999999999999999998753 34555 44 237888876 55
Q ss_pred HHHHHhCCCCCC-----chhhhH----HhhhhcHH--HHHHHHHhcCCC-CCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 61 DVMEELGLGPNG-----GLIYCM----EHLEDNLD--DWLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 61 ~~l~~~~l~~~~-----~~~~~~----~~~~~~~s--~~la~~l~~~~~-p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
++++..++.+.- +..... ..+++|++ ++||||++. + |++|||||||+ +|..+.+.+. +.+++..
T Consensus 1417 ~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~--~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~ 1493 (1560)
T PTZ00243 1417 AALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK--KGSGFILMDEATANIDPALDRQIQ-ATVMSAF 1493 (1560)
T ss_pred HHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc--CCCCEEEEeCCCccCCHHHHHHHH-HHHHHHC
Confidence 667766664210 000000 23555544 899999998 7 89999999999 9999999988 7777753
Q ss_pred hCCCcEEEEEeccccccc
Q 026589 128 SRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~ 145 (236)
.++|+|+|. |.+.
T Consensus 1494 -~~~TvI~IA----HRl~ 1506 (1560)
T PTZ00243 1494 -SAYTVITIA----HRLH 1506 (1560)
T ss_pred -CCCEEEEEe----ccHH
Confidence 468888774 7764
No 356
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=8.4e-18 Score=132.33 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCC----C-CCCCC-------CCcCCHHHhhh---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPA----A-ENFDY-------PVAMDIRELIS--------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~---~G~i~i~~~d~~----~-~~~~~-------~~~~~i~~~i~--------- 58 (236)
-++.++||+|||||||+..+.|++.+. +|++++++.+.. . +.++. ++.+++.+++.
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG 108 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKG 108 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCccccc
Confidence 578899999999999999999999874 799999987652 1 12211 34455555442
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026589 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (236)
Q Consensus 59 ------~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (236)
++.++++.|+...-... -+.++++++ +++-|++.. +|+.+++|||++ ||..-+.+..+-.+.+....
T Consensus 109 ~aRr~~a~aAL~~~gL~g~f~~d--P~tlSGGQrARvaL~R~Lla--~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~a 184 (213)
T COG4136 109 NARRNAANAALERSGLDGAFHQD--PATLSGGQRARVALLRALLA--QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAA 184 (213)
T ss_pred HHHHhhHHHHHHHhccchhhhcC--hhhcCcchHHHHHHHHHHHh--CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 77889999987643222 145777776 899999999 999999999999 99999999886667777678
Q ss_pred CCcEEEEEecccccccch
Q 026589 130 NFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~ 147 (236)
|..++.|+ |+..|+
T Consensus 185 giPtv~VT----HD~~Dv 198 (213)
T COG4136 185 GIPTVQVT----HDLQDV 198 (213)
T ss_pred CCCeEEEe----cccccC
Confidence 99998886 555443
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.75 E-value=2.1e-18 Score=178.98 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-CCCCCCCCCcCCHHHhhh---------HHHHHHHhCCC---
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS---------LEDVMEELGLG--- 69 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~-~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~--- 69 (236)
-.++|+||||||||||+++|+|+++|++|+|.++|.-. ..+. ++..+.+++|++. +.++++..++.
T Consensus 453 ~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l 531 (1490)
T TIGR01271 453 QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQT-SWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDI 531 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCC-CccCCccHHHHHHhccccchHHHHHHHHHHhHHHHH
Confidence 46899999999999999999999999999999987210 1111 1212237777764 23334333321
Q ss_pred ---CCCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecc
Q 026589 70 ---PNGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (236)
Q Consensus 70 ---~~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (236)
|.+... ..-..+++|++ ++||||+.. +|+++|||||++ ||..+...+++.++..+. +++|+|++.
T Consensus 532 ~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~--~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvt--- 605 (1490)
T TIGR01271 532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVT--- 605 (1490)
T ss_pred HhccccccccccCcCCCcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEe---
Confidence 111100 00123556654 999999999 999999999999 999999999955666664 478888775
Q ss_pred cccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 141 SQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 141 ~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
|...... .++.++....+.+....+
T Consensus 606 -H~~~~~~-~ad~ii~l~~g~i~~~g~ 630 (1490)
T TIGR01271 606 -SKLEHLK-KADKILLLHEGVCYFYGT 630 (1490)
T ss_pred -CChHHHH-hCCEEEEEECCEEEEEcC
Confidence 6655433 366666655555443333
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.75 E-value=6.1e-18 Score=158.70 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=93.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CCC--CCCC-CCCCcCCHHHhh----------hHHHHHHHhCCC
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPA--AENF-DYPVAMDIRELI----------SLEDVMEELGLG 69 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~-d~~--~~~~-~~~~~~~i~~~i----------~~~~~l~~~~l~ 69 (236)
-++|+||||+|||||+|+|.|...|.+|+|.+... .++ .+.. .+..+.++.+.+ .+...+..|++.
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999987532 111 0000 111222332222 367788899998
Q ss_pred CCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEeccccccc
Q 026589 70 PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 70 ~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~ 145 (236)
+... ..+...+++|.+ +.||+.+.. +|.+|||||||+ ||+.+...+. +.+... ..++++|. ||-+++.
T Consensus 430 ~~~~-~~~v~~LSGGEk~Rl~La~ll~~--~pNvLiLDEPTNhLDi~s~~aLe-~aL~~f---~Gtvl~VS-HDr~Fl~ 500 (530)
T COG0488 430 GEDQ-EKPVGVLSGGEKARLLLAKLLLQ--PPNLLLLDEPTNHLDIESLEALE-EALLDF---EGTVLLVS-HDRYFLD 500 (530)
T ss_pred hHHH-hCchhhcCHhHHHHHHHHHHhcc--CCCEEEEcCCCccCCHHHHHHHH-HHHHhC---CCeEEEEe-CCHHHHH
Confidence 7643 334466777765 888888888 999999999999 9999997666 555444 44777774 4444443
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.75 E-value=1.3e-18 Score=180.38 Aligned_cols=151 Identities=20% Similarity=0.221 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCc-----CCHHHhhh---------HH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS---------LE 60 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~-----~~i~~~i~---------~~ 60 (236)
-.+||+|++|||||||+++|.|++. .+|+|.++|.|+.. +.+.| +|+ -|+|++++ +.
T Consensus 1246 ekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~ 1324 (1490)
T TIGR01271 1246 QRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIW 1324 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHH
Confidence 4589999999999999999999997 79999999998753 34444 442 37888885 55
Q ss_pred HHHHHhCCCCC-----CchhhhH----HhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh
Q 026589 61 DVMEELGLGPN-----GGLIYCM----EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 61 ~~l~~~~l~~~-----~~~~~~~----~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (236)
++++..++.+. .+..... ..+++|++ ++|||+++. +|++|||||||+ +|..+...+. +.+++..
T Consensus 1325 ~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr--~~~ILlLDEaTS~lD~~Te~~I~-~~L~~~~- 1400 (1490)
T TIGR01271 1325 KVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS--KAKILLLDEPSAHLDPVTLQIIR-KTLKQSF- 1400 (1490)
T ss_pred HHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-
Confidence 67777766421 0111001 12445544 899999999 999999999999 9999998888 7777753
Q ss_pred CCCcEEEEEecccccccchhhHhhhhHHHHHHHHh
Q 026589 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
.++|+++|. |.+..... ++.++++..|.+.
T Consensus 1401 ~~~TvI~Ia----HRl~ti~~-~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1401 SNCTVILSE----HRVEALLE-CQQFLVIEGSSVK 1430 (1490)
T ss_pred CCCEEEEEe----cCHHHHHh-CCEEEEEECCEEE
Confidence 478888774 77654333 4544444444443
No 360
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.4e-17 Score=148.22 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCC-CC-------CcCCHH------Hh----hhHHHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFD-YP-------VAMDIR------EL----ISLEDVME 64 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~-~~-------~~~~i~------~~----i~~~~~l~ 64 (236)
-++.|+|.||||||||++.+.|+++|++|+|+++|.++..++.. |. .+.-.. |. -.++.+++
T Consensus 350 elvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~Lq 429 (546)
T COG4615 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQ 429 (546)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHH
Confidence 47899999999999999999999999999999999877543321 10 000000 00 01667777
Q ss_pred HhCCCCCC---chhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEe
Q 026589 65 ELGLGPNG---GLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (236)
Q Consensus 65 ~~~l~~~~---~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l 138 (236)
++.+...- +..++.-+++.|++ +++-.|++. +.++++|||-.+ -||.-++.+...++-.++++|+||+.+.
T Consensus 430 rLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs- 506 (546)
T COG4615 430 RLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS- 506 (546)
T ss_pred HHHHhhhhcccCCcccccccccchHHHHHHHHHHHh--hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe-
Confidence 77665321 11122235666665 677778888 999999999999 9999999999889999988999998886
Q ss_pred cccccccchhhHhhhhHHHHHHHHhhC
Q 026589 139 LDSQFITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 139 ~d~~~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
||-|+... +++++-+..|++.-.
T Consensus 507 HDd~YF~~----ADrll~~~~G~~~e~ 529 (546)
T COG4615 507 HDDHYFIH----ADRLLEMRNGQLSEL 529 (546)
T ss_pred cCchhhhh----HHHHHHHhcCceeec
Confidence 67666542 344555555554433
No 361
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.74 E-value=3.9e-18 Score=141.72 Aligned_cols=131 Identities=11% Similarity=0.071 Sum_probs=86.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCC---------ceEEEeccCCCC----CCCCC-CCcCCH----HHhhhHHHHHHH
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVR---------RTMHIVNLDPAA----ENFDY-PVAMDI----RELISLEDVMEE 65 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~---------G~i~i~~~d~~~----~~~~~-~~~~~i----~~~i~~~~~l~~ 65 (236)
+++|+||||||||||+++|+|++.+.. |++.+.|.++.. ..++| +|+.+. ...-.++++++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~ 103 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA 103 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence 689999999999999999999986653 356666665421 22233 222211 011135666666
Q ss_pred hCCCCCCchhhhHHhhhhcHH--HHHHHHHhc--CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecc
Q 026589 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (236)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~--~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (236)
.... ......++++++ +++|++++. ..+|+++++|||++ ||+.....++ ++++++++ +.+++++.
T Consensus 104 ---~~~~--~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiIiit--- 173 (197)
T cd03278 104 ---PGKK--VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-ETQFIVIT--- 173 (197)
T ss_pred ---CCcc--ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc-CCEEEEEE---
Confidence 2111 112345666644 888888762 11679999999999 9999999999 89998855 67776664
Q ss_pred ccccc
Q 026589 141 SQFIT 145 (236)
Q Consensus 141 ~~~~~ 145 (236)
|...
T Consensus 174 -H~~~ 177 (197)
T cd03278 174 -HRKG 177 (197)
T ss_pred -CCHH
Confidence 6554
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=99.74 E-value=6.3e-18 Score=164.26 Aligned_cols=148 Identities=12% Similarity=0.150 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC---CCCCceEEEeccCCCCCC---------------------CCC-CCc-------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHIVNLDPAAEN---------------------FDY-PVA------- 50 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l---~~~~G~i~i~~~d~~~~~---------------------~~~-~~~------- 50 (236)
-.+||+||||||||||+|+|+|.. .|.+|+|.+.++.+.... ..+ ++.
T Consensus 204 e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~ 283 (718)
T PLN03073 204 RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFET 283 (718)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 468999999999999999999864 578899987665421100 000 000
Q ss_pred ---------------CCHHHhh-----------------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcC
Q 026589 51 ---------------MDIRELI-----------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNY 96 (236)
Q Consensus 51 ---------------~~i~~~i-----------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~ 96 (236)
-.+.+.+ .+.++++.+|+.+.. .......+++|.+ ++||++++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~-~~~~~~~LSgG~k~rv~LA~aL~~- 361 (718)
T PLN03073 284 ETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEM-QVKATKTFSGGWRMRIALARALFI- 361 (718)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHH-HhCchhhCCHHHHHHHHHHHHHhc-
Confidence 0000000 033455556664221 1112345777654 999999999
Q ss_pred CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 97 LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 97 ~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
+|++|||||||+ ||+.++..+. ++++++ +.++++|. |.......+|+.++....+.
T Consensus 362 -~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~---~~tviivs----Hd~~~l~~~~d~i~~l~~g~ 418 (718)
T PLN03073 362 -EPDLLLLDEPTNHLDLHAVLWLE-TYLLKW---PKTFIVVS----HAREFLNTVVTDILHLHGQK 418 (718)
T ss_pred -CCCEEEEECCCCCCCHHHHHHHH-HHHHHc---CCEEEEEE----CCHHHHHHhCCEEEEEECCE
Confidence 999999999999 9999998888 777765 56777774 77766666666554444433
No 363
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.1e-18 Score=137.22 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=103.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC----C-----------CCCCCCC-CCcC------CHHHhh--
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD----P-----------AAENFDY-PVAM------DIRELI-- 57 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d----~-----------~~~~~~~-~~~~------~i~~~i-- 57 (236)
+.|+++=||+||||||++|.+.|-+.|++|+|.+.-.. . ....++| .|.+ ..-|.+
T Consensus 37 GECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvae 116 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAE 116 (235)
T ss_pred ccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHh
Confidence 36899999999999999999999999999999985322 1 1133444 2211 111111
Q ss_pred --------------hHHHHHHHhCCCCCCchhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 58 --------------SLEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 58 --------------~~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
.+.+.+.++++.+......+. .++++ +++.|||.++. +=++|+|||||+ ||..++.-+.
T Consensus 117 Pll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa-TFSGGEqQRVNIaRgfiv--d~pILLLDEPTasLDa~Nr~vVv- 192 (235)
T COG4778 117 PLLARGVPREVARAKAADLLTRLNLPERLWSLAPA-TFSGGEQQRVNIARGFIV--DYPILLLDEPTASLDATNRAVVV- 192 (235)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc-ccCCchheehhhhhhhhc--cCceEEecCCcccccccchHHHH-
Confidence 156677777776543222221 23333 23999999999 999999999998 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhH
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 155 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l 155 (236)
+++++-+..|..++-+| |+-+-....+++++
T Consensus 193 eli~e~Ka~GaAlvGIF----HDeevre~vadR~~ 223 (235)
T COG4778 193 ELIREAKARGAALVGIF----HDEEVREAVADRLL 223 (235)
T ss_pred HHHHHHHhcCceEEEee----ccHHHHHHHhhhee
Confidence 99999888899999887 55444455555443
No 364
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.74 E-value=1.9e-17 Score=141.12 Aligned_cols=141 Identities=14% Similarity=0.157 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----------------hCCCCCCc--------eEEEeccCC----CC------CCCCC-
Q 026589 3 YAQLVIGPAGSGKSTYCSSLY----------------RHCETVRR--------TMHIVNLDP----AA------ENFDY- 47 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~----------------g~l~~~~G--------~i~i~~~d~----~~------~~~~~- 47 (236)
.+++|+||||||||||+++|+ +++.+.+| ++.+.|.+. .. +.+++
T Consensus 24 ~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~ 103 (243)
T cd03272 24 KHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLK 103 (243)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECC
Confidence 368999999999999999998 45555566 555555321 11 11222
Q ss_pred CCc-------CCHHHhhhHHHHHHHhCCCCCCc------------------hhhhHHhhhhcHH--HHHHHHHhc--CCC
Q 026589 48 PVA-------MDIRELISLEDVMEELGLGPNGG------------------LIYCMEHLEDNLD--DWLAEELDN--YLD 98 (236)
Q Consensus 48 ~~~-------~~i~~~i~~~~~l~~~~l~~~~~------------------~~~~~~~~~~~~s--~~la~~l~~--~~~ 98 (236)
++. .+..+ +...++.+++.+... .......++++++ +.||++++. ..+
T Consensus 104 ~~~~~l~~~~~t~~e---i~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~ 180 (243)
T cd03272 104 KDEYFLDKKNVTKND---VMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDP 180 (243)
T ss_pred CCEEEECCeEcCHHH---HHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCC
Confidence 111 12222 445666666654210 0011233555543 899999962 115
Q ss_pred CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhh
Q 026589 99 DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 153 (236)
Q Consensus 99 p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~ 153 (236)
|+++|+||||+ +|+.++..++ +.++++++ +.+++++| |. .+...+++.
T Consensus 181 ~~illlDEp~~~ld~~~~~~~~-~~l~~~~~-~~~ii~~~----h~-~~~~~~~d~ 229 (243)
T cd03272 181 APFYLFDEIDAALDAQYRTAVA-NMIKELSD-GAQFITTT----FR-PELLEVADK 229 (243)
T ss_pred CCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEe----cC-HHHHhhCCE
Confidence 89999999999 9999999999 88888855 66666554 43 334455543
No 365
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2.3e-17 Score=132.87 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----------------CCCCCC-CC------------cCCH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------------AENFDY-PV------------AMDI 53 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~----------------~~~~~~-~~------------~~~i 53 (236)
.+.+|+|.+|||||||+++|++.+.|+.|+|.+...+-. +...++ .| .-+|
T Consensus 33 eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni 112 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI 112 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCcc
Confidence 578999999999999999999999999999999763311 011222 11 0111
Q ss_pred HHhh-------------hHHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHH
Q 026589 54 RELI-------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (236)
Q Consensus 54 ~~~i-------------~~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~ 117 (236)
.|.+ ...+|++++.+++..-...+ ..++++++ ..|||-+.. .|+++++||||. ||...+..
T Consensus 113 GERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~P-rtFSGGMqQRLQiARnLVt--~PrLvfMDEPTGGLDVSVQAR 189 (258)
T COG4107 113 GERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLP-RTFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQAR 189 (258)
T ss_pred chhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcc-cccchHHHHHHHHHHHhcc--CCceEEecCCCCCcchhhHHH
Confidence 1111 17789999998876432222 24566654 899999999 999999999998 99999999
Q ss_pred HHHHHHHHHHh-CCCcEEEEEeccccccc
Q 026589 118 VLRNFVDHLKS-RNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 118 ~~~~ll~~l~~-~~~~ii~v~l~d~~~~~ 145 (236)
++ ++++.|.. .+..+++|+ |.+.
T Consensus 190 LL-DllrgLv~~l~la~viVT----HDl~ 213 (258)
T COG4107 190 LL-DLLRGLVRELGLAVVIVT----HDLA 213 (258)
T ss_pred HH-HHHHHHHHhcCceEEEEe----chhH
Confidence 99 99999975 588888875 7665
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.72 E-value=2.3e-17 Score=139.83 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=61.5
Q ss_pred HHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEE
Q 026589 60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (236)
Q Consensus 60 ~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p--~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (236)
.+.++.+++.+....... ..++++++ +.||++++. +| +++|+||||+ ||+.++..+. +++++++++|.+++
T Consensus 118 ~~~l~~~~l~~~~~~~~~-~~LSgG~~qrv~laral~~--~p~~~llllDEPt~gLD~~~~~~l~-~~l~~~~~~g~tii 193 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSA-PTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDLGNTVL 193 (226)
T ss_pred HHHHHHCCCCcccccCcc-CcCCHHHHHHHHHHHHHHh--CCCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 456777888652111111 34555543 999999998 87 5999999999 9999999999 88999877788888
Q ss_pred EEEecccccccchhhHhhhh
Q 026589 135 AVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 135 ~v~l~d~~~~~d~~~~~~~~ 154 (236)
++. |..... .+++.+
T Consensus 194 ~it----H~~~~~-~~~d~i 208 (226)
T cd03270 194 VVE----HDEDTI-RAADHV 208 (226)
T ss_pred EEE----eCHHHH-HhCCEE
Confidence 774 665433 355433
No 367
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.72 E-value=1.4e-17 Score=142.99 Aligned_cols=133 Identities=15% Similarity=0.133 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEecc-CCC---------C-------CCC---------CCCCcCCHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNL-DPA---------A-------ENF---------DYPVAMDIRE 55 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-~G~i~i~~~-d~~---------~-------~~~---------~~~~~~~i~~ 55 (236)
-+.+|+|||||||||++++|++++.+. .|++.+.+. +.- . ++. ...+.+++.+
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r 105 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTR 105 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEE
Confidence 357999999999999999999998875 456666544 210 0 000 0001111111
Q ss_pred ------------------hhhHHHHHHHhCCCCCCc------------------hhhhHHhhhhcHH--HHHHHHHhc--
Q 026589 56 ------------------LISLEDVMEELGLGPNGG------------------LIYCMEHLEDNLD--DWLAEELDN-- 95 (236)
Q Consensus 56 ------------------~i~~~~~l~~~~l~~~~~------------------~~~~~~~~~~~~s--~~la~~l~~-- 95 (236)
.-.+.++++.+++..+.. .......++++++ +++|++++.
T Consensus 106 ~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~ 185 (251)
T cd03273 106 QIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLL 185 (251)
T ss_pred EEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhh
Confidence 012677888999873210 0011123444443 888888862
Q ss_pred CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 96 YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 96 ~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
..+|+++++||||+ ||+..+..+. ++++++. +|.+++++.
T Consensus 186 ~~~~~illlDEPt~~ld~~~~~~~~-~~l~~~~-~g~~ii~iS 226 (251)
T cd03273 186 FKPAPMYILDEVDAALDLSHTQNIG-RMIKTHF-KGSQFIVVS 226 (251)
T ss_pred ccCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHc-CCCEEEEEE
Confidence 11789999999999 9999999999 8888885 477777664
No 368
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.72 E-value=1.2e-17 Score=173.63 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-CCCCCCCCCcCCHHHhhh---------HHHHHHHh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS---------LEDVMEEL------ 66 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~-~~~~~~~~~~~~i~~~i~---------~~~~l~~~------ 66 (236)
..++|+||||||||||+++|+|+++|++|+|.++|.-- ..+. ++..+.+++|++. .+++++..
T Consensus 665 ~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l 743 (1522)
T TIGR00957 665 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ-AWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL 743 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCC-ccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHH
Confidence 46899999999999999999999999999999886210 0111 1222347777764 23333332
Q ss_pred CCCCCCchh---hhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH--hCCCcEEEEEe
Q 026589 67 GLGPNGGLI---YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK--SRNFNVCAVYL 138 (236)
Q Consensus 67 ~l~~~~~~~---~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~--~~~~~ii~v~l 138 (236)
+.-|.|... ..-..+++|++ ++||||+.. +|+++|||||++ ||..+.+.++ +.+.+.. .+++|++++.
T Consensus 744 ~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~--~~~illLDEp~saLD~~~~~~i~-~~l~~~~~~~~~~tvIlvT- 819 (1522)
T TIGR00957 744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIF-EHVIGPEGVLKNKTRILVT- 819 (1522)
T ss_pred HhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-HHHhhhhhhhcCCEEEEEe-
Confidence 222322110 00124666654 999999999 999999999999 9999999999 4443321 2467887774
Q ss_pred cccccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 139 LDSQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 139 ~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
|...... .++.++....|.+....++
T Consensus 820 ---H~~~~l~-~~D~ii~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 820 ---HGISYLP-QVDVIIVMSGGKISEMGSY 845 (1522)
T ss_pred ---CChhhhh-hCCEEEEecCCeEEeeCCH
Confidence 5554333 3666666656665544444
No 369
>PLN03130 ABC transporter C family member; Provisional
Probab=99.71 E-value=2e-17 Score=172.46 Aligned_cols=157 Identities=14% Similarity=0.164 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCC-ceEEEeccCCCCCCCCCCCcCCHHHhhh---------HHHHHHHhCCCC--
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP-- 70 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~-G~i~i~~~d~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~~-- 70 (236)
-.++|+||+|||||||+++|.|.++|.+ |+|.+.+.---...-++-.+-||||+|. ++++++..++.+
T Consensus 644 e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di 723 (1622)
T PLN03130 644 SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDL 723 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHH
Confidence 4689999999999999999999999999 8998654211111122323457888875 555666555432
Q ss_pred ----CCchhh---hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecc
Q 026589 71 ----NGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (236)
Q Consensus 71 ----~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (236)
.|.... .-..+++|++ ++||||+.. +|+++||||||+ ||..+.+.++++.++.+. .++|+|+|.
T Consensus 724 ~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~--~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVT--- 797 (1622)
T PLN03130 724 DLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS--NSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVT--- 797 (1622)
T ss_pred HhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEE---
Confidence 211100 0023666654 999999999 999999999999 999999888767777653 477887774
Q ss_pred cccccchhhHhhhhHHHHHHHHhhCCC
Q 026589 141 SQFITDVTKFISGCMASLSAMVQLELP 167 (236)
Q Consensus 141 ~~~~~d~~~~~~~~l~~~~~~i~~~~p 167 (236)
|... ....++.++....|.+....+
T Consensus 798 -H~l~-~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 798 -NQLH-FLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred -CCHh-HHHhCCEEEEEeCCEEEEeCC
Confidence 5553 233455555554554443333
No 370
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=1.6e-17 Score=164.91 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CC-----cCCHHHhhh-------HHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-------LEDV 62 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~-----~~~i~~~i~-------~~~~ 62 (236)
..+|++||+||||||....|-.++.|++|.|.++|.|+.. ++++. .| +-||||++. .+|+
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eI 1096 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEI 1096 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHH
Confidence 4689999999999999999999999999999999988754 22333 11 346888775 2333
Q ss_pred HHHhCCC---------CCCchhhh---HHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH
Q 026589 63 MEELGLG---------PNGGLIYC---MEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 63 l~~~~l~---------~~~~~~~~---~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~ 127 (236)
++...+. |+|-.-.. --.+++|++ .+||||++. +|++|||||.|+ ||..+.+-+- +.+++..
T Consensus 1097 i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR--nPkILLLDEATSALDseSErvVQ-eALd~a~ 1173 (1228)
T KOG0055|consen 1097 IEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR--NPKILLLDEATSALDSESERVVQ-EALDRAM 1173 (1228)
T ss_pred HHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc--CCCeeeeeccchhhhhhhHHHHH-HHHHHhh
Confidence 3322111 11100000 023556554 999999999 999999999999 9999987776 8888875
Q ss_pred hCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccch
Q 026589 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (236)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~~ 181 (236)
.|+|.|+|- |.++.... ...|.|+.++-.+++.
T Consensus 1174 -~gRT~IvIA----HRLSTIqn----------------aD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1174 -EGRTTIVIA----HRLSTIQN----------------ADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred -cCCcEEEEe----cchhhhhc----------------CCEEEEEECCEEEecc
Confidence 466655552 55542222 2567778777777655
No 371
>PTZ00243 ABC transporter; Provisional
Probab=99.70 E-value=2.1e-17 Score=171.97 Aligned_cols=149 Identities=19% Similarity=0.138 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--CCCCCCCCcCCHHHhhh---------HHHHHHHh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS---------LEDVMEEL----- 66 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--~~~~~~~~~~~i~~~i~---------~~~~l~~~----- 66 (236)
..++|+||||||||||+++|+|.++|++|+|.+.+. ++ .+. ++..+.+++|++. ++++++..
T Consensus 687 ~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~-i~yv~Q~-~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~ 764 (1560)
T PTZ00243 687 KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS-IAYVPQQ-AWIMNATVRGNILFFDEEDAARLADAVRVSQLEAD 764 (1560)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCe-EEEEeCC-CccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHH
Confidence 468999999999999999999999999999987421 11 111 1112346777664 22233322
Q ss_pred ------CCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 67 ------GLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 67 ------~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
|+....+.. ...+++|++ ++|||++.. +|+++|||||++ ||+.+...+++.++.... .|+|++++.
T Consensus 765 l~~l~~g~~t~i~~~--g~~LSGGQkqRvaLARAl~~--~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvT 839 (1560)
T PTZ00243 765 LAQLGGGLETEIGEK--GVNLSGGQKARVSLARAVYA--NRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLAT 839 (1560)
T ss_pred HHHhhccchHHhcCC--CCCCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEe
Confidence 222110111 124566654 999999999 999999999999 999998888855554432 478887774
Q ss_pred ecccccccchhhHhhhhHHHHHHHHh
Q 026589 138 LLDSQFITDVTKFISGCMASLSAMVQ 163 (236)
Q Consensus 138 l~d~~~~~d~~~~~~~~l~~~~~~i~ 163 (236)
|..... .+++.++....+.+.
T Consensus 840 ----H~~~~~-~~ad~ii~l~~G~i~ 860 (1560)
T PTZ00243 840 ----HQVHVV-PRADYVVALGDGRVE 860 (1560)
T ss_pred ----CCHHHH-HhCCEEEEEECCEEE
Confidence 554332 345555444444443
No 372
>PLN03232 ABC transporter C family member; Provisional
Probab=99.70 E-value=4.2e-17 Score=169.40 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-CCCCCCCCcCCHHHhhh---------HHHHHHHhCCCC--
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS---------LEDVMEELGLGP-- 70 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~-~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~~-- 70 (236)
-.++|+||+|||||||+++|.|.++|.+|.+......++ ...-++-.+-||||++. ++++++..++.+
T Consensus 644 e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di 723 (1495)
T PLN03232 644 SLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDL 723 (1495)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHH
Confidence 468999999999999999999999999886543211111 01112222447888875 555666555432
Q ss_pred ----CCchhh---hHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecc
Q 026589 71 ----NGGLIY---CMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (236)
Q Consensus 71 ----~~~~~~---~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (236)
+|.... .-..+++|++ ++||||+.. +|+++||||||+ ||..+.+.+++++++.+. .++|+|+|.
T Consensus 724 ~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~--~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvT--- 797 (1495)
T PLN03232 724 DLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS--NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVT--- 797 (1495)
T ss_pred HhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEE---
Confidence 211100 0023666654 999999999 999999999999 999999888866676653 467887774
Q ss_pred cccccchhhHhhhhHHHHHHHHhhCCCe
Q 026589 141 SQFITDVTKFISGCMASLSAMVQLELPH 168 (236)
Q Consensus 141 ~~~~~d~~~~~~~~l~~~~~~i~~~~p~ 168 (236)
|.... ...++.++....|.+....++
T Consensus 798 -H~~~~-l~~aD~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 798 -NQLHF-LPLMDRIILVSEGMIKEEGTF 823 (1495)
T ss_pred -CChhh-HHhCCEEEEEeCCEEEEecCH
Confidence 55532 344555555555555444444
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.69 E-value=8.7e-17 Score=129.53 Aligned_cols=163 Identities=17% Similarity=0.214 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CCcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-------~~~~~i~~~i~---------- 58 (236)
.+.-+|||||||||||+..++|++ |-+|+|.+.|.+... +..+| +..+.+..+++
T Consensus 26 e~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~ 104 (248)
T COG4138 26 EILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTE 104 (248)
T ss_pred eEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHH
Confidence 467799999999999999999986 568999999988732 01111 00112333332
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhcH--HHHHHHHHhcC---CCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026589 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNY---LDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (236)
Q Consensus 59 -~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~---~~p--~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (236)
++++...+++++...+. .+.++++- ++.+|...... .+| +++++|||.+ ||...+..+- +++.++++.
T Consensus 105 ~i~~i~~~L~l~DKL~Rs--~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd-rll~~~c~~ 181 (248)
T COG4138 105 LLNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD-RLLSALCQQ 181 (248)
T ss_pred HHHHHHhhhcccchhhhh--hhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH-HHHHHHHhC
Confidence 67788888998764433 44565553 25666555543 133 6999999999 9998877766 999999999
Q ss_pred CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecc
Q 026589 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (236)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vls 173 (236)
|.+||+. +|+++...+-++.++....+.+......-.|++
T Consensus 182 G~~vims----~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 182 GLAIVMS----SHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred CcEEEEe----ccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 9999765 588887777777666665555544444444443
No 374
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.68 E-value=7.7e-17 Score=138.29 Aligned_cols=130 Identities=17% Similarity=0.245 Sum_probs=86.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-------C-----CC---------CC--------------CCCC
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-------P-----AA---------EN--------------FDYP 48 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-------~-----~~---------~~--------------~~~~ 48 (236)
+++|+|||||||||++.+|++.+.+..|++...+.+ . .. +. ..|.
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 588999999999999999999987766665443211 0 00 00 0000
Q ss_pred ---CcCCHHHhhhHHHHHHHhCCCCCCc--------------------hhhhHHhhhhcHH--HHHHHHHhc--CCCCCE
Q 026589 49 ---VAMDIRELISLEDVMEELGLGPNGG--------------------LIYCMEHLEDNLD--DWLAEELDN--YLDDDY 101 (236)
Q Consensus 49 ---~~~~i~~~i~~~~~l~~~~l~~~~~--------------------~~~~~~~~~~~~s--~~la~~l~~--~~~p~~ 101 (236)
...+-. .++++++.+|+..... .......++++.+ +.||++++. +.+|++
T Consensus 104 ingk~~s~~---~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ 180 (247)
T cd03275 104 INGKVVSLK---EYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPF 180 (247)
T ss_pred ECCEEecHH---HHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCE
Confidence 000111 2677888888864311 1111234455543 889999875 013899
Q ss_pred EEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 102 LVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 102 lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
+|+|||++ ||+..+..+. +++++++++|.+++++.
T Consensus 181 lllDEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~is 216 (247)
T cd03275 181 FVLDEVDAALDNTNVGKVA-SYIREQAGPNFQFIVIS 216 (247)
T ss_pred EEEecccccCCHHHHHHHH-HHHHHhccCCcEEEEEE
Confidence 99999999 9999999999 89999876688887775
No 375
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.67 E-value=5.7e-16 Score=138.47 Aligned_cols=162 Identities=18% Similarity=0.257 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC-----------CCCCC---------CCcCCHHHhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELI 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-----~~G~i~i~~~d~~~-----------~~~~~---------~~~~~i~~~i 57 (236)
..++++|.+|||||-..+.+.|+++. -+|+|.++|.|.-. ..+.. .|-.+|...+
T Consensus 37 EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi 116 (534)
T COG4172 37 ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL 116 (534)
T ss_pred CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHH
Confidence 46899999999999999999999865 36899999988622 11211 2223443333
Q ss_pred h-----------------HHHHHHHhCCCCCCch--hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhH
Q 026589 58 S-----------------LEDVMEELGLGPNGGL--IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (236)
Q Consensus 58 ~-----------------~~~~l~~~~l~~~~~~--~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~ 115 (236)
. +.++++.+|+...... .|+ +.++++++ +.||.|++. +|++||-||||. ||...+
T Consensus 117 ~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP-HeLSGGqRQRVMIAMALan--~P~lLIADEPTTALDVtvQ 193 (534)
T COG4172 117 AEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP-HELSGGQRQRVMIAMALAN--EPDLLIADEPTTALDVTVQ 193 (534)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC-cccCcchhhHHHHHHHHcC--CCCeEeecCCcchhhhhhH
Confidence 2 6678888898743222 233 34666654 999999999 999999999998 999999
Q ss_pred HHHHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccccccccchhhhhhhc
Q 026589 116 VPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYL 188 (236)
Q Consensus 116 ~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~~~~~l~~~~ 188 (236)
.+++ +++++|++ .|+.+++++ |++.-+.+|++ .+.|+.+++.++.. .-+..|
T Consensus 194 aQIL-~Ll~~Lq~~~gMa~lfIT----HDL~iVr~~AD---------------rV~VM~~G~ivE~~-~t~~lF 246 (534)
T COG4172 194 AQIL-DLLKELQAELGMAILFIT----HDLGIVRKFAD---------------RVYVMQHGEIVETG-TTETLF 246 (534)
T ss_pred HHHH-HHHHHHHHHhCcEEEEEe----ccHHHHHHhhh---------------hEEEEeccEEeecC-cHHHHh
Confidence 9999 99999986 599998885 88877777765 66777777777655 334333
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.67 E-value=1.1e-16 Score=134.29 Aligned_cols=142 Identities=14% Similarity=0.095 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEec----cCCCC--CCCCC-CC------------cCCHHHhhhHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVN----LDPAA--ENFDY-PV------------AMDIRELISLEDV 62 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~-l~~~~G~i~i~~----~d~~~--~~~~~-~~------------~~~i~~~i~~~~~ 62 (236)
.+++|+|||||||||++++|++. +.+..+...... ..... ..+.+ ++ .++..+..... .
T Consensus 29 ~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~-~ 107 (213)
T cd03279 29 GLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV-L 107 (213)
T ss_pred CEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh-h
Confidence 37899999999999999999964 334333333210 00010 01111 00 11211111000 1
Q ss_pred HHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcC--------CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 026589 63 MEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (236)
Q Consensus 63 l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~--------~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (236)
++..++.+..... ...++++.. +.+|++++.. .+|+++|+|||++ +|+.++..+. ++++++++++.
T Consensus 108 l~~g~l~~~l~~~--~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~~~ 184 (213)
T cd03279 108 LPQGEFDRFLARP--VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTENR 184 (213)
T ss_pred hhhcchHHHhcCC--ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCC
Confidence 1222222211111 123444433 8899999741 1578999999999 9999999998 88999876688
Q ss_pred cEEEEEecccccccchhhHhh
Q 026589 132 NVCAVYLLDSQFITDVTKFIS 152 (236)
Q Consensus 132 ~ii~v~l~d~~~~~d~~~~~~ 152 (236)
+++++. |.......+++
T Consensus 185 tii~it----H~~~~~~~~~~ 201 (213)
T cd03279 185 MVGVIS----HVEELKERIPQ 201 (213)
T ss_pred EEEEEE----CchHHHHhhCc
Confidence 887774 66655555554
No 377
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.65 E-value=3.5e-16 Score=143.77 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-C--CC----CCCCCC---------cCCHHHhhhHHHHHHHhC
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-A--AE----NFDYPV---------AMDIRELISLEDVMEELG 67 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~-~--~~----~~~~~~---------~~~i~~~i~~~~~l~~~~ 67 (236)
-++++||||+|||||+|+++|.+.|..|.|.-..... + .+ ..+|.. ..+.++.-.+..++.++|
T Consensus 418 rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfg 497 (614)
T KOG0927|consen 418 RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFG 497 (614)
T ss_pred ceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhC
Confidence 3799999999999999999999999999987654321 1 11 111100 001222223777899999
Q ss_pred CCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccc
Q 026589 68 LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (236)
Q Consensus 68 l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~ 144 (236)
|.... +...+..++.+++ +.+|+.+.. .|.+|+|||||+ ||..+...+. +.++++ ..++|+|. |.+
T Consensus 498 Ltgd~-q~~p~~~LS~Gqr~rVlFa~l~~k--qP~lLlLDEPtnhLDi~tid~la-eaiNe~---~Ggvv~vS----HDf 566 (614)
T KOG0927|consen 498 LTGDA-QVVPMSQLSDGQRRRVLFARLAVK--QPHLLLLDEPTNHLDIETIDALA-EAINEF---PGGVVLVS----HDF 566 (614)
T ss_pred CCccc-cccchhhcccccchhHHHHHHHhc--CCcEEEecCCCcCCCchhHHHHH-HHHhcc---CCceeeee----chh
Confidence 98653 4445677777765 888988888 999999999999 9999987766 666554 33565563 665
Q ss_pred cchhhHhh
Q 026589 145 TDVTKFIS 152 (236)
Q Consensus 145 ~d~~~~~~ 152 (236)
.-...++.
T Consensus 567 rlI~qVae 574 (614)
T KOG0927|consen 567 RLISQVAE 574 (614)
T ss_pred hHHHHHHH
Confidence 54444443
No 378
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.5e-16 Score=142.33 Aligned_cols=131 Identities=20% Similarity=0.251 Sum_probs=81.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe-------ccCCCCCCCCCCCcCCHHHhh-------------hHH-HHH
Q 026589 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-------NLDPAAENFDYPVAMDIRELI-------------SLE-DVM 63 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~-------~~d~~~~~~~~~~~~~i~~~i-------------~~~-~~l 63 (236)
+|++|+||+|||||+|+|+. |.|... |-+.....-....+..+.+.+ .+. .++
T Consensus 109 YGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L 182 (582)
T KOG0062|consen 109 YGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL 182 (582)
T ss_pred cceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 58999999999999999997 222221 111100000000011111111 122 266
Q ss_pred HHhCCCCCCchhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecc
Q 026589 64 EELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (236)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (236)
..+|+.+.... .+...+++| ++++||||+.. +||+|+|||||+ ||..+...+- .. |+..+.|+++|. ||
T Consensus 183 ~glGFt~emq~-~pt~slSGGWrMrlaLARAlf~--~pDlLLLDEPTNhLDv~av~WLe-~y---L~t~~~T~liVS-HD 254 (582)
T KOG0062|consen 183 AGLGFTPEMQL-QPTKSLSGGWRMRLALARALFA--KPDLLLLDEPTNHLDVVAVAWLE-NY---LQTWKITSLIVS-HD 254 (582)
T ss_pred HhCCCCHHHHh-ccccccCcchhhHHHHHHHHhc--CCCEEeecCCcccchhHHHHHHH-HH---HhhCCceEEEEe-cc
Confidence 67787765322 233456666 44999999999 999999999999 9998876655 43 444567787775 77
Q ss_pred cccccchhh
Q 026589 141 SQFITDVTK 149 (236)
Q Consensus 141 ~~~~~d~~~ 149 (236)
+.++..+..
T Consensus 255 r~FLn~V~t 263 (582)
T KOG0062|consen 255 RNFLNTVCT 263 (582)
T ss_pred HHHHHHHHH
Confidence 777665444
No 379
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.64 E-value=7.3e-16 Score=133.25 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=59.3
Q ss_pred HHHHHHHhCCCCC-CchhhhHHhhhhcHH--HHHHHHHhcCCC---CCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCC
Q 026589 59 LEDVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (236)
Q Consensus 59 ~~~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~---p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (236)
..++++.+||+.. .+.. ...++++.+ +.||++++. + |+++||||||+ ||+..+..++ ++++++.++|.
T Consensus 149 ~~~~L~~vgL~~l~l~~~--~~~LSgGe~QRl~LAraL~~--~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~g~ 223 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQP--ATTLSGGEAQRIKLAKELSK--RSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGN 223 (261)
T ss_pred HHHHHHHcCCchhhhcCc--cccCCHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 4456778888752 2222 234555543 899999998 6 79999999999 9999999999 89999987788
Q ss_pred cEEEEEeccccccc
Q 026589 132 NVCAVYLLDSQFIT 145 (236)
Q Consensus 132 ~ii~v~l~d~~~~~ 145 (236)
+++++. |...
T Consensus 224 tvIiit----H~~~ 233 (261)
T cd03271 224 TVVVIE----HNLD 233 (261)
T ss_pred EEEEEe----CCHH
Confidence 888774 6654
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.64 E-value=2.5e-15 Score=125.46 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=76.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH----hCCCCCCceEEEeccC----CCCCCCCC-CC-----------cCCHHHhhh---HH
Q 026589 4 AQLVIGPAGSGKSTYCSSLY----RHCETVRRTMHIVNLD----PAAENFDY-PV-----------AMDIRELIS---LE 60 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~----g~l~~~~G~i~i~~~d----~~~~~~~~-~~-----------~~~i~~~i~---~~ 60 (236)
+++|+||||||||||+++|. |...+..|.+...... .....+.+ ++ .+++.+++. -.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 68999999999999999995 8888877765411111 11111111 11 123333331 01
Q ss_pred HHHHHhCCCCCCchhhhHHhhhhcHH--------HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHH-HHHHHHHHHHHhC-
Q 026589 61 DVMEELGLGPNGGLIYCMEHLEDNLD--------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV-PVLRNFVDHLKSR- 129 (236)
Q Consensus 61 ~~l~~~~l~~~~~~~~~~~~~~~~~s--------~~la~~l~~~~~p~~lllDEPt~-LD~~~~~-~~~~~ll~~l~~~- 129 (236)
++-+.+.-. ...++.+.. ++++++++. +|+++++|||++ ||+..+. .+. +++++++++
T Consensus 104 ~~~~~~~~~--------~~~LS~G~~~~~~la~rlala~al~~--~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~ 172 (204)
T cd03240 104 ESNWPLLDM--------RGRCSGGEKVLASLIIRLALAETFGS--NCGILALDEPTTNLDEENIEESLA-EIIEERKSQK 172 (204)
T ss_pred HHHHHHhcC--------ccccCccHHHHHHHHHHHHHHHHhcc--CCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhcc
Confidence 111111000 112333332 467888888 999999999999 9999999 888 999998765
Q ss_pred CCcEEEEE
Q 026589 130 NFNVCAVY 137 (236)
Q Consensus 130 ~~~ii~v~ 137 (236)
+.+++++.
T Consensus 173 ~~~iiiit 180 (204)
T cd03240 173 NFQLIVIT 180 (204)
T ss_pred CCEEEEEE
Confidence 77777764
No 381
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.63 E-value=2.4e-16 Score=156.92 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC--CCCceEEEeccCCCC----CCCCC-------CCcCCHHHhhh-----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~--~~~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~----------- 58 (236)
..+|++|++|||||||+++|+|-.. ..+|+|.++|.+... +..+| .+..||||.+.
T Consensus 818 ~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v 897 (1391)
T KOG0065|consen 818 VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEV 897 (1391)
T ss_pred ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcC
Confidence 4689999999999999999999753 357999999987642 33455 13457887664
Q ss_pred --------HHHHHHHhCCCCCCchhhhH--HhhhhcHH--HHHHHHHhcCCCC-CEEEEeCCCc-ccHHhHHHHHHHHHH
Q 026589 59 --------LEDVMEELGLGPNGGLIYCM--EHLEDNLD--DWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVD 124 (236)
Q Consensus 59 --------~~~~l~~~~l~~~~~~~~~~--~~~~~~~s--~~la~~l~~~~~p-~~lllDEPt~-LD~~~~~~~~~~ll~ 124 (236)
++++|+.++|++...-.... +-++..++ +.||-.|+. +| .+|+|||||+ ||..+.-.++ ++++
T Consensus 898 ~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA--~P~~ilFLDEPTSGLDsqaA~~i~-~~lr 974 (1391)
T KOG0065|consen 898 SDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA--NPSSILFLDEPTSGLDSQAAAIVM-RFLR 974 (1391)
T ss_pred CHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec--CCceeEEecCCCCCccHHHHHHHH-HHHH
Confidence 89999999998653222111 00111222 677778888 99 8999999999 9999999999 9999
Q ss_pred HHHhCCCcEEEEEecccccccchhhHhhhhHHH-HHHHHhhCC
Q 026589 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS-LSAMVQLEL 166 (236)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~-~~~~i~~~~ 166 (236)
+++..|.+|+++- | +--.+.-+-.+++|++ ..|+...-+
T Consensus 975 kla~tGqtIlCTI-H--QPS~~ife~FD~LLLLkrGGqtVY~G 1014 (1391)
T KOG0065|consen 975 KLADTGQTILCTI-H--QPSIDIFEAFDELLLLKRGGQTVYFG 1014 (1391)
T ss_pred HHHhcCCeEEEEe-c--CCcHHHHHHHhHHHHHhcCCeEEEec
Confidence 9999999987652 1 2223344445555543 344444333
No 382
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.61 E-value=2.2e-15 Score=136.39 Aligned_cols=127 Identities=15% Similarity=0.208 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--CCCCCCCCCcCCHHHhhh------------HHHHHHHhCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEELGL 68 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~--~~~~~~~~~~~~i~~~i~------------~~~~l~~~~l 68 (236)
-+++++||||-|||||+++|+|.++|++|. ..++.+ ..+.+.-..+-+|++.+. ..++++-+++
T Consensus 368 EvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l 445 (591)
T COG1245 368 EVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL 445 (591)
T ss_pred eEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccch
Confidence 579999999999999999999999999997 111111 111111122345666543 3345555555
Q ss_pred CCCCchhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEE
Q 026589 69 GPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (236)
Q Consensus 69 ~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (236)
++...+. ...++++ +++++|.+|.. ++++.++|||.+ ||...+..+. +.+++... .+++.++|
T Consensus 446 ~~i~e~~--v~~LSGGELQRvaIaa~L~r--eADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vV 512 (591)
T COG1245 446 EDLLERP--VDELSGGELQRVAIAAALSR--EADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVV 512 (591)
T ss_pred HHHHhcc--cccCCchhHHHHHHHHHhcc--ccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEE
Confidence 5431111 1233333 33999999999 999999999999 9999998888 89999876 45666555
No 383
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.61 E-value=3.7e-16 Score=131.34 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=48.9
Q ss_pred HHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcC--CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEE
Q 026589 60 EDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (236)
Q Consensus 60 ~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~--~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (236)
.++.+.+++....... ...++.+++ +.+|++++.. .+|+++++|||++ +|+.++..+. +.++++++ +.+++
T Consensus 109 ~~~~~~~~L~~~~~~~--~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~-~~l~~~~~-~~~~i 184 (212)
T cd03274 109 GEVEQIAQMPKKSWKN--ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVA-NYIKERTK-NAQFI 184 (212)
T ss_pred CcEEEeeccccccccc--hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHcC-CCEEE
Confidence 3444555664322111 233445543 8889988631 1589999999999 9999999999 88998854 44555
Q ss_pred EEE
Q 026589 135 AVY 137 (236)
Q Consensus 135 ~v~ 137 (236)
++.
T Consensus 185 ivs 187 (212)
T cd03274 185 VIS 187 (212)
T ss_pred EEE
Confidence 553
No 384
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.61 E-value=1.3e-15 Score=153.95 Aligned_cols=152 Identities=19% Similarity=0.222 Sum_probs=104.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCcC-----CHHHhhh---------HHH
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS---------LED 61 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~i~---------~~~ 61 (236)
=+||+|..|||||||.+++-++..|.+|+|.++|.|+.. ..+.. ||+. |+|.+++ +-+
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ 1247 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWE 1247 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHH
Confidence 489999999999999999999999999999999999853 22332 3322 4555554 334
Q ss_pred HHHHhCCCCCC-----chhhhH----HhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026589 62 VMEELGLGPNG-----GLIYCM----EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (236)
Q Consensus 62 ~l~~~~l~~~~-----~~~~~~----~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (236)
++++.+|.+.- ++.... +.++-|++ +.||||++. ++++|++||.|+ +|+.+-..+- +.+++-- .
T Consensus 1248 ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr--~skILvLDEATAsVD~~TD~lIQ-~tIR~~F-~ 1323 (1381)
T KOG0054|consen 1248 ALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREEF-K 1323 (1381)
T ss_pred HHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc--cCCEEEEecccccCChHHHHHHH-HHHHHHh-c
Confidence 44444433210 000000 22333333 899999999 999999999999 9999986666 6666632 4
Q ss_pred CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecccccccc
Q 026589 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179 (236)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dll~ 179 (236)
++||+.+ +|.+..+- +..++-|+.++.+++
T Consensus 1324 dcTVltI----AHRl~TVm----------------d~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1324 DCTVLTI----AHRLNTVM----------------DSDRVLVLDAGRVVE 1353 (1381)
T ss_pred CCeEEEE----eeccchhh----------------hcCeEEEeeCCeEee
Confidence 7888877 37765433 346778888777765
No 385
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.59 E-value=9.7e-15 Score=133.24 Aligned_cols=128 Identities=17% Similarity=0.224 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCcC-----CHHHhhh----------
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS---------- 58 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~i~---------- 58 (236)
+..++++||+|+||||++|.+..++..++|.|.++|+|+.+ ..++. ||+. +|..++.
T Consensus 564 GktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asnee 643 (790)
T KOG0056|consen 564 GKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEE 643 (790)
T ss_pred CcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHH
Confidence 35789999999999999999999999999999999999853 23333 3321 2222221
Q ss_pred HHHHHHHh-------CC--------CCCCchhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 LEDVMEEL-------GL--------GPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 ~~~~l~~~-------~l--------~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
+.++.+.. ++ |+.| -++++| +++++||++.. .|.+++|||.|+ ||..+.+.+-
T Consensus 644 vyaAAkAA~IHdrIl~fPegY~t~VGERG------LkLSGGEKQRVAiARtiLK--~P~iIlLDEATSALDT~tER~IQ- 714 (790)
T KOG0056|consen 644 VYAAAKAAQIHDRILQFPEGYNTRVGERG------LKLSGGEKQRVAIARTILK--APSIILLDEATSALDTNTERAIQ- 714 (790)
T ss_pred HHHHHHHhhHHHHHhcCchhhhhhhhhcc------cccCCcchhhHHHHHHHhc--CCcEEEEcchhhhcCCccHHHHH-
Confidence 22222111 11 1111 123333 44999999999 999999999999 9999998888
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 026589 121 NFVDHLKSRNFNVCAVYL 138 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l 138 (236)
..+.++.+...+|++.|-
T Consensus 715 aaL~rlca~RTtIVvAHR 732 (790)
T KOG0056|consen 715 AALARLCANRTTIVVAHR 732 (790)
T ss_pred HHHHHHhcCCceEEEeee
Confidence 888998876556655553
No 386
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.6e-15 Score=136.09 Aligned_cols=128 Identities=17% Similarity=0.204 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CCcC-----CHHHhhh----------H
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS----------L 59 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-------~~~~~-~~~~-----~i~~~i~----------~ 59 (236)
..++++||+|+||||+++.+..++.+++|.|.++|+|+.. ..++. ||+. ++.-++. +
T Consensus 290 ~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev 369 (497)
T COG5265 290 KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEV 369 (497)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHH
Confidence 4689999999999999999999999999999999998742 12222 2221 1222221 2
Q ss_pred HHHHHHhC------CCCCC-----chhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHH
Q 026589 60 EDVMEELG------LGPNG-----GLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (236)
Q Consensus 60 ~~~l~~~~------l~~~~-----~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~ 125 (236)
..+.+... -.|.| +.+. -+++++ +++++||.++. +|++++|||.|+ ||..+.+.+. .-+++
T Consensus 370 ~aaa~~aqi~~fi~~lP~gy~t~Vgerg--lklSggekqrvaiar~ilk--~p~il~~deatsaldt~te~~iq-~~l~~ 444 (497)
T COG5265 370 GAAAEAAQIHDFIQSLPEGYDTGVGERG--LKLSGGEKQRVAIARTILK--NPPILILDEATSALDTHTEQAIQ-AALRE 444 (497)
T ss_pred HHHHHHhhhhHHHHhCchhhhcccchhe--eeccCchHHHHHHHHHHhc--CCCEEEEehhhhHhhhhHHHHHH-HHHHH
Confidence 22222222 22221 0000 012222 44999999999 999999999999 9999999888 88888
Q ss_pred HHhCCCcEEEE
Q 026589 126 LKSRNFNVCAV 136 (236)
Q Consensus 126 l~~~~~~ii~v 136 (236)
..+ |.|.+++
T Consensus 445 ~~~-~rttlvi 454 (497)
T COG5265 445 VSA-GRTTLVI 454 (497)
T ss_pred HhC-CCeEEEE
Confidence 865 5554444
No 387
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.58 E-value=7.9e-15 Score=135.57 Aligned_cols=154 Identities=14% Similarity=0.177 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CCcCCHHHhhh------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------ 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~--------~~~~~----------~~~~~i~~~i~------ 58 (236)
-+++|.|--|||+|-++++|.|+-++.+|+|.++|.+... ..+.| ....+|+++++
T Consensus 286 EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~ 365 (500)
T COG1129 286 EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR 365 (500)
T ss_pred cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhh
Confidence 5899999999999999999999999999999999986532 22333 22445666665
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHhhhh-cH-HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHH
Q 026589 59 ---------------LEDVMEELGLGPNGGLIYCMEHLED-NL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (236)
Q Consensus 59 ---------------~~~~l~~~~l~~~~~~~~~~~~~~~-~~-s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~ 120 (236)
++++.+.+++....... ....+++ |+ ++.||+.|+. +|++|||||||. +|..++.++.
T Consensus 366 ~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~-~v~~LSGGNQQKVvlarwL~~--~p~vLilDEPTRGIDVGAK~eIy- 441 (500)
T COG1129 366 FSRRGLIDRRKERALAERYIRRLRIKTPSPEQ-PIGTLSGGNQQKVVLARWLAT--DPKVLILDEPTRGIDVGAKAEIY- 441 (500)
T ss_pred hccccccChHHHHHHHHHHHHhcCcccCCccc-hhhcCCchhhhhHHHHHHHhc--CCCEEEECCCCcCcccchHHHHH-
Confidence 45555566655332111 1223444 33 3999999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhh
Q 026589 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (236)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~ 164 (236)
+++++|+++|++|+++. ..+.+....|++++++..+.+.-
T Consensus 442 ~li~~lA~~G~ail~iS----SElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 442 RLIRELAAEGKAILMIS----SELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHHHHHCCCEEEEEe----CChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999998884 77777777777665555555443
No 388
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.57 E-value=1.7e-15 Score=125.94 Aligned_cols=120 Identities=11% Similarity=0.162 Sum_probs=72.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH--------hCCCCCCceEEEeccCCCCCCCCC-CCcCCHHHhhhHHHHHHHhCCCCCCch
Q 026589 4 AQLVIGPAGSGKSTYCSSLY--------RHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGL 74 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~--------g~l~~~~G~i~i~~~d~~~~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~ 74 (236)
+++|+||||||||||+|.+. |...|..+.+ .++| .+.++ .++.....
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------~~~~~~~~~~------------~lg~~~~l-- 85 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------SLPVFENIFA------------DIGDEQSI-- 85 (200)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------cCcCccEEEE------------ecCchhhh--
Confidence 68999999999999999999 5444432111 1222 11111 11111100
Q ss_pred hhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHh
Q 026589 75 IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (236)
Q Consensus 75 ~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (236)
...+..++.+++ ..++++ +. +|+++++|||++ +|+..+..++..+++.+++.+.+++++. |. .+...++
T Consensus 86 ~~~~s~fs~g~~~~~~i~~~-~~--~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~t----H~-~~l~~~~ 157 (200)
T cd03280 86 EQSLSTFSSHMKNIARILQH-AD--PDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATT----HY-GELKAYA 157 (200)
T ss_pred hcCcchHHHHHHHHHHHHHh-CC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEC----CH-HHHHHHH
Confidence 000123444443 444444 35 899999999999 9999999987568888876777776663 54 3344555
Q ss_pred hhhH
Q 026589 152 SGCM 155 (236)
Q Consensus 152 ~~~l 155 (236)
+...
T Consensus 158 d~~~ 161 (200)
T cd03280 158 YKRE 161 (200)
T ss_pred hcCC
Confidence 4433
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=131.99 Aligned_cols=127 Identities=23% Similarity=0.281 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------------------CCCCC----CC--
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDY----PV-- 49 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~---------------------------~~~~~----~~-- 49 (236)
.+++|+||||-||||-+|+|+|.+.|.=|+.. + +|.- ....| |.
T Consensus 101 ~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~-pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~ 177 (591)
T COG1245 101 KVVGILGPNGIGKSTALKILAGELKPNLGRYE--D-PPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV 177 (591)
T ss_pred cEEEEEcCCCccHHHHHHHHhCccccCCCCCC--C-CCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence 57999999999999999999999999877642 1 1210 11112 10
Q ss_pred cCCHHHhhh-------HHHHHHHhCCCCCCchhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHH
Q 026589 50 AMDIRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (236)
Q Consensus 50 ~~~i~~~i~-------~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~ 119 (236)
.-++++.++ .++++++++|..-..+. .+.++++ ++++||.+++. ++++++||||++ ||...+..+.
T Consensus 178 KG~v~elLk~~de~g~~devve~l~L~nvl~r~--v~~LSGGELQr~aIaa~l~r--dADvY~FDEpsSyLDi~qRl~~a 253 (591)
T COG1245 178 KGKVGELLKKVDERGKFDEVVERLGLENVLDRD--VSELSGGELQRVAIAAALLR--DADVYFFDEPSSYLDIRQRLNAA 253 (591)
T ss_pred cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhh--hhhcCchHHHHHHHHHHHhc--cCCEEEEcCCcccccHHHHHHHH
Confidence 113455543 78899999998653332 3455554 34899999999 999999999999 9999999999
Q ss_pred HHHHHHHHhCCCcEEEEE
Q 026589 120 RNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~ 137 (236)
+++++|.+.++.|++|-
T Consensus 254 -r~Irel~~~~k~ViVVE 270 (591)
T COG1245 254 -RVIRELAEDGKYVIVVE 270 (591)
T ss_pred -HHHHHHhccCCeEEEEe
Confidence 99999988788888774
No 390
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.54 E-value=2.2e-14 Score=119.47 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=67.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-----CCcCCHHHhhhHHHHHHHhCCCCCCchhhhH
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-----~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~ 78 (236)
+++|+||||||||||+|.|+|.... ...|.++......+ ....+++|++.. ++....
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~-------~~s~~~------ 88 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNVIL-----AQAGAPVCASSFELPPVKIFTSIRVSDDLRD-------GISYFY------ 88 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHH-----HHcCCEEecCccCcccceEEEeccchhcccc-------ccChHH------
Confidence 6899999999999999999986531 11222221111111 223334443211 111110
Q ss_pred HhhhhcHHHHHHHHHhcCC--CCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEeccccccc
Q 026589 79 EHLEDNLDDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (236)
Q Consensus 79 ~~~~~~~s~~la~~l~~~~--~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~ 145 (236)
... ... ...+.... +|+++|+|||++ +|+..+..+...+++.+.+.+.+++++. |...
T Consensus 89 ~e~-~~~----~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivT----H~~~ 149 (199)
T cd03283 89 AEL-RRL----KEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIIST----HDLE 149 (199)
T ss_pred HHH-HHH----HHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEc----CcHH
Confidence 011 112 22222222 899999999999 9999988776468888877777776663 6644
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.53 E-value=8.2e-14 Score=115.86 Aligned_cols=134 Identities=10% Similarity=0.081 Sum_probs=76.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCC-----ce----EEEeccCCCC-----CCCCCCC-cCCHHHhhhHHHHHHHhCC
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-----RT----MHIVNLDPAA-----ENFDYPV-AMDIRELISLEDVMEELGL 68 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~-----G~----i~i~~~d~~~-----~~~~~~~-~~~i~~~i~~~~~l~~~~l 68 (236)
+.+|+|||||||||++.+|...+.... |. +.-.|.+.+. ++-...+ .....+.-.++++++.
T Consensus 23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 99 (198)
T cd03276 23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTS--- 99 (198)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcc---
Confidence 468999999999999999985433221 11 0000100000 0101111 0111111235566665
Q ss_pred CCCCchhhhHHhhhhcHH--HHHHHHH----hcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC--C-CcEEEEEe
Q 026589 69 GPNGGLIYCMEHLEDNLD--DWLAEEL----DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR--N-FNVCAVYL 138 (236)
Q Consensus 69 ~~~~~~~~~~~~~~~~~s--~~la~~l----~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~--~-~~ii~v~l 138 (236)
.... ......++++++ ++||+++ +. +|+++|+|||++ +|+..+..+. ++++++.+. + .+++++
T Consensus 100 ~~~~--~~~~~~lS~G~k~r~~ia~al~~~~~~--~p~illlDEP~~glD~~~~~~~~-~~l~~~~~~~~~~~~iii~-- 172 (198)
T cd03276 100 NKAA--VRDVKTLSGGERSFSTVCLLLSLWEVM--ESPFRCLDEFDVFMDMVNRKIST-DLLVKEAKKQPGRQFIFIT-- 172 (198)
T ss_pred cccc--CCcccccChhHHHHHHHHHHHHHhccc--CCCEEEecCcccccCHHHHHHHH-HHHHHHHhcCCCcEEEEEE--
Confidence 2111 111234555544 7888888 46 999999999999 9999999999 888877543 3 355444
Q ss_pred cccccccchhh
Q 026589 139 LDSQFITDVTK 149 (236)
Q Consensus 139 ~d~~~~~d~~~ 149 (236)
+|.+.+...
T Consensus 173 --th~~~~i~~ 181 (198)
T cd03276 173 --PQDISGLAS 181 (198)
T ss_pred --CCccccccc
Confidence 366554443
No 392
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.53 E-value=1.4e-14 Score=146.77 Aligned_cols=162 Identities=17% Similarity=0.174 Sum_probs=114.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhh---------HHHHHHHhCCCCC--
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGPN-- 71 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~---------~~~~l~~~~l~~~-- 71 (236)
..++|+||-|||||+|+.+|.|-++..+|+|.+.|.---...-+|-++-||||+|- ++++++...|.+.
T Consensus 548 ~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle 627 (1381)
T KOG0054|consen 548 QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLE 627 (1381)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHh
Confidence 45899999999999999999999999999999998521122233445678999985 7777776666532
Q ss_pred ----Cchhhh---HHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEEeccc
Q 026589 72 ----GGLIYC---MEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (236)
Q Consensus 72 ----~~~~~~---~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~ 141 (236)
|++-.- --.+++|++ ++||||+-. ++++++||.|.+ +|..+.+.++++.++.+- +++|+|.|+
T Consensus 628 ~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~--~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVT---- 700 (1381)
T KOG0054|consen 628 ILPFGDLTEIGERGINLSGGQKQRISLARAVYQ--DADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVT---- 700 (1381)
T ss_pred hcCCCCcceecCCccCCcHhHHHHHHHHHHHhc--cCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEe----
Confidence 211100 013556655 999999999 999999999998 999999999988886653 467887775
Q ss_pred ccccchhhHhhhhHHHHHHHHhhCCCeeeec
Q 026589 142 QFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (236)
Q Consensus 142 ~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vl 172 (236)
|.+. --.-++.++++.+|++.-.+.+-..+
T Consensus 701 Hql~-~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 701 HQLQ-FLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred Cchh-hhhhCCEEEEecCCeEecccCHHHHH
Confidence 4322 23334555666666665555554433
No 393
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.53 E-value=3.9e-14 Score=133.45 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=90.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-C-CCCCCCCCCcCCHHHhhh------------HHHHHHHhCCC
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P-AAENFDYPVAMDIRELIS------------LEDVMEELGLG 69 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d-~-~~~~~~~~~~~~i~~~i~------------~~~~l~~~~l~ 69 (236)
-+.|.||||||||||+|+|+|+.+--+|+|.+-... . --...+|.+.-+.||.+. +.+++.++||+
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~ 500 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLG 500 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcH
Confidence 367999999999999999999999999998765211 0 001234433335555443 77888888888
Q ss_pred CCCchh----hhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026589 70 PNGGLI----YCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 70 ~~~~~~----~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
+..... ..-..++.+ +++++||.+.+ +|++++|||.|+ ||..+...++ +.+++-. .+.++|.|
T Consensus 501 ~L~~rl~~~~~W~~vLS~GEqQRlafARilL~--kP~~v~LDEATsALDe~~e~~l~-q~l~~~l-p~~tvISV 570 (604)
T COG4178 501 DLAERLDEEDRWDRVLSGGEQQRLAFARLLLH--KPKWVFLDEATSALDEETEDRLY-QLLKEEL-PDATVISV 570 (604)
T ss_pred HHHHHHhccCcHhhhcChhHHHHHHHHHHHHc--CCCEEEEecchhccChHHHHHHH-HHHHhhC-CCCEEEEe
Confidence 642211 111223333 34999999999 999999999999 9999998888 6655521 47788777
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.6e-13 Score=124.12 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=84.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCC-C--------cCCHHHhh---------hHHHH
Q 026589 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP-V--------AMDIRELI---------SLEDV 62 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~-~--------~~~i~~~i---------~~~~~ 62 (236)
|-.-++|+||||.|||||++.+.|-+.|..|+..-+- . -.++++ | ..+.-+++ .+...
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-r---L~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~ 687 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-R---LRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQ 687 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-e---eeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHH
Confidence 3345899999999999999999999999999765331 0 111110 0 01111111 15556
Q ss_pred HHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 63 MEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 63 l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
+-.|||......+. +..+++++. +++|...+. .|++|||||||+ ||+.+...+. +.|++. .| .||+|.
T Consensus 688 LG~fGL~sHAHTik-ikdLSGGQKaRValaeLal~--~PDvlILDEPTNNLDIESIDALa-EAIney--~G-gVi~Vs 758 (807)
T KOG0066|consen 688 LGTFGLASHAHTIK-IKDLSGGQKARVALAELALG--GPDVLILDEPTNNLDIESIDALA-EAINEY--NG-GVIMVS 758 (807)
T ss_pred hhhhhhhhccceEe-eeecCCcchHHHHHHHHhcC--CCCEEEecCCCCCcchhhHHHHH-HHHHhc--cC-cEEEEe
Confidence 66777776544332 245667665 777766666 999999999999 9999987777 666665 23 455664
No 395
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.47 E-value=2.6e-13 Score=125.01 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=83.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe--cc--CCCC----C-----------CCCC-----CC---cC------
Q 026589 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV--NL--DPAA----E-----------NFDY-----PV---AM------ 51 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~--~~--d~~~----~-----------~~~~-----~~---~~------ 51 (236)
+||+|||||||||++++|+|-..|..-++-+- .. .|.. + .+.| .+ +.
T Consensus 104 ygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~ 183 (614)
T KOG0927|consen 104 YGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELD 183 (614)
T ss_pred EEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHH
Confidence 68999999999999999999988754433221 11 1100 0 0000 00 00
Q ss_pred CHHHh--------hh--HHHHHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 52 DIREL--------IS--LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 52 ~i~~~--------i~--~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
++.+. +. +..++..+|..+...... ...+++|.+ ++|||+|.. +|++|+|||||+ ||+.+...+
T Consensus 184 ~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~-~~~~SgGwrmR~aLAr~Lf~--kP~LLLLDEPtnhLDleA~~wL 260 (614)
T KOG0927|consen 184 ELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKK-VKDLSGGWRMRAALARALFQ--KPDLLLLDEPTNHLDLEAIVWL 260 (614)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHH-hhccCchHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHH
Confidence 00000 00 333444444443322222 234555543 999999999 999999999999 999998776
Q ss_pred HHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
- +.+.+..+ . +++++ +|.-.-...+|..++-.....
T Consensus 261 e-e~L~k~d~-~-~lVi~----sh~QDfln~vCT~Ii~l~~kk 296 (614)
T KOG0927|consen 261 E-EYLAKYDR-I-ILVIV----SHSQDFLNGVCTNIIHLDNKK 296 (614)
T ss_pred H-HHHHhccC-c-eEEEE----ecchhhhhhHhhhhheecccc
Confidence 6 55554421 2 44444 355554556665544443333
No 396
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.46 E-value=7.6e-14 Score=114.75 Aligned_cols=125 Identities=14% Similarity=0.193 Sum_probs=74.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026589 4 AQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~-g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
+++|.||||||||||+|.+. ..+.+..|....- ..-.+++ +++++..++........ ...++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a----~~~~~~~-----------~d~il~~~~~~d~~~~~--~s~fs 63 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA----ESAELPV-----------FDRIFTRIGASDSLAQG--LSTFM 63 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee----hheEecc-----------cceEEEEeCCCCchhcc--ccHHH
Confidence 36799999999999999998 3443444442211 0111222 11223333333221111 12344
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCcEEEEEecccccccchhhHh
Q 026589 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (236)
.++ ..+++++....+|+++|+|||+. +|+.....+...+++.+.++ +.++++++ |.. +..+++
T Consensus 64 ~~~-~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~T----H~~-~l~~~~ 128 (185)
T smart00534 64 VEM-KETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFAT----HYH-ELTKLA 128 (185)
T ss_pred HHH-HHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEe----cHH-HHHHHh
Confidence 455 45555555434899999999999 99998888765788888763 77776553 655 344443
No 397
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.44 E-value=3.8e-13 Score=111.14 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=99.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC-------CCCC-----------CCcCCHHHhhhHHHHHHHh
Q 026589 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDY-----------PVAMDIRELISLEDVMEEL 66 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~-------~~~~-----------~~~~~i~~~i~~~~~l~~~ 66 (236)
..++|.||||||||+|+++|---.-.|.|.+.|.++-.+ .+.| ..+..+.--+++++++.-.
T Consensus 43 cLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV 122 (291)
T KOG2355|consen 43 CLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV 122 (291)
T ss_pred EEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHHhhc
Confidence 468999999999999999997666679999999887431 1222 0111111123344443322
Q ss_pred CCC-CC----------CchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCC
Q 026589 67 GLG-PN----------GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (236)
Q Consensus 67 ~l~-~~----------~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~ 131 (236)
+-. |. ......|+..+.+++ +.|+..|+. .=++|+|||.|- ||..++..++ +++++-.+ +|.
T Consensus 123 ~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~--PfkVLLLDEVTVDLDVlARadLL-eFlkeEce~Rga 199 (291)
T KOG2355|consen 123 GGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLK--PFKVLLLDEVTVDLDVLARADLL-EFLKEECEQRGA 199 (291)
T ss_pred cCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccc--ceeEEEeeeeEeehHHHHHHHHH-HHHHHHHhhcCc
Confidence 211 10 112233556666665 888888877 669999999998 9999999999 88888664 688
Q ss_pred cEEEEEecccccccchhhHhhhhHHHHHHHHhh
Q 026589 132 NVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (236)
Q Consensus 132 ~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~ 164 (236)
||+..+ |.+.-.+++-+.+....++.+..
T Consensus 200 tIVYAT----HIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 200 TIVYAT----HIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred EEEEEe----eeccchhhcchhEEEecCCeeee
Confidence 887653 55555555555444444454443
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.43 E-value=6.3e-13 Score=111.79 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=40.2
Q ss_pred HhhhhcHH--HHHH----HHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-C-CcEEEEE
Q 026589 79 EHLEDNLD--DWLA----EELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N-FNVCAVY 137 (236)
Q Consensus 79 ~~~~~~~s--~~la----~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~-~~ii~v~ 137 (236)
..++++++ ..++ ++++. +|+++++|||++ +|+.++..++ +++.++.++ | .+++++.
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~--~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viiit 189 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELT--RCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLIT 189 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhcc--CCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEEc
Confidence 34555554 2222 33346 999999999999 9999999999 888888665 5 3566553
No 399
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.43 E-value=1.4e-13 Score=114.56 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=64.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEeccCCC-CCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPA-AENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~-l~~~~G~i~i~~~d~~-~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
.++|+||||||||||++.+++. +.+..|... |+ ...+++.. +.+..++...... ..+..+
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-----~~~~~~i~~~d-----------qi~~~~~~~d~i~--~~~s~~ 92 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-----PAESASIPLVD-----------RIFTRIGAEDSIS--DGRSTF 92 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-----cccccccCCcC-----------EEEEEecCccccc--CCceeH
Confidence 6899999999999999999953 323333211 11 11222210 0111111111000 001112
Q ss_pred hhcH-HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 82 EDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 82 ~~~~-s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
..++ +...+.+.+. +|+++|+|||++ +|+..+..+...+++.+.+.+.++++++
T Consensus 93 ~~e~~~l~~i~~~~~--~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~t 148 (202)
T cd03243 93 MAELLELKEILSLAT--PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFAT 148 (202)
T ss_pred HHHHHHHHHHHHhcc--CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 2222 1233334445 999999999999 9999888876467787776677777663
No 400
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.39 E-value=4.1e-13 Score=111.36 Aligned_cols=145 Identities=18% Similarity=0.267 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC----CceEEEeccCCC-----C------CCCCC-CC----cCCH-----HHhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDPA-----A------ENFDY-PV----AMDI-----RELI 57 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~----~G~i~i~~~d~~-----~------~~~~~-~~----~~~i-----~~~i 57 (236)
.+-+++|.+|||||-..|+|+|..+.. .-+..+++.|.- . ++++. +| .+|- ++.+
T Consensus 34 Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlI 113 (330)
T COG4170 34 EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLI 113 (330)
T ss_pred eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHH
Confidence 467999999999999999999987642 333444554431 1 12221 11 1111 1111
Q ss_pred h---------------------HHHHHHHhCCCCCCchhhhHHh--hhh-cHHHHHHHHHhcCCCCCEEEEeCCCc-ccH
Q 026589 58 S---------------------LEDVMEELGLGPNGGLIYCMEH--LED-NLDDWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (236)
Q Consensus 58 ~---------------------~~~~l~~~~l~~~~~~~~~~~~--~~~-~~s~~la~~l~~~~~p~~lllDEPt~-LD~ 112 (236)
. +-+++.++|+.+..+...+..+ -.+ .+.+.||.|++. +|++||.||||+ +|+
T Consensus 114 q~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~An--qPrLLIADEPTN~~e~ 191 (330)
T COG4170 114 QNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALAN--QPRLLIADEPTNSMEP 191 (330)
T ss_pred hhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhcc--CCceEeccCCCcccCc
Confidence 1 5567888898877554422111 111 123899999999 999999999999 999
Q ss_pred HhHHHHHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhh
Q 026589 113 FTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 113 ~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
.++.+++ +++.++.+ +|.+|+.+ +|++...+.+++.+
T Consensus 192 ~Tq~Qif-RLLs~mNQn~~TtILL~----s~Dl~~is~W~d~i 229 (330)
T COG4170 192 TTQAQIF-RLLSRLNQNSNTTILLI----SHDLQMISQWADKI 229 (330)
T ss_pred cHHHHHH-HHHHHhhccCCceEEEE----cccHHHHHHHhhhe
Confidence 9999999 99999987 57777555 58888888888644
No 401
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.38 E-value=1.7e-12 Score=134.71 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=64.3
Q ss_pred HHHHHhCCCCC-CchhhhHHhhhhcHH--HHHHHHHh---cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcE
Q 026589 61 DVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELD---NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (236)
Q Consensus 61 ~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~---~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (236)
++++.+|++.. .+.. ...++++++ +.||++++ . +|+++||||||+ ||+.....++ ++++++++.|.+|
T Consensus 791 ~~L~~vGL~~l~l~q~--~~tLSGGE~QRV~LAraL~~~~~--~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~TV 865 (1809)
T PRK00635 791 HALCSLGLDYLPLGRP--LSSLSGGEIQRLKLAYELLAPSK--KPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHTV 865 (1809)
T ss_pred HHHHHcCCcchhhcCc--cccCCHHHHHHHHHHHHHhhcCC--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEE
Confidence 36667788653 2222 234555544 89999997 5 899999999999 9999999999 9999998788898
Q ss_pred EEEEecccccccchhhHhhhhHHH
Q 026589 134 CAVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 134 i~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
+++. |.+... .+++.++.+
T Consensus 866 IiIs----Hdl~~i-~~aDrVi~L 884 (1809)
T PRK00635 866 VIIE----HNMHVV-KVADYVLEL 884 (1809)
T ss_pred EEEe----CCHHHH-HhCCEEEEE
Confidence 8774 766554 556544443
No 402
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=8.7e-13 Score=120.99 Aligned_cols=122 Identities=20% Similarity=0.168 Sum_probs=86.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCC-C-cCC-------HHHhh----------hHHHHHHH
Q 026589 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP-V-AMD-------IRELI----------SLEDVMEE 65 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~-~-~~~-------i~~~i----------~~~~~l~~ 65 (236)
++++|+||+||||+++++.|-++|.+|.+.+.+. ..+.|+ | ..+ .-+.. .++..+..
T Consensus 393 i~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r----~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~ 468 (582)
T KOG0062|consen 393 ISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR----LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGS 468 (582)
T ss_pred hheeccCchhHHHHHHHHhccCCcccceeeeccc----ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 5789999999999999999999999998877642 223331 1 111 00000 16777888
Q ss_pred hCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 66 ~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
+|+....+... +..+++|+. +++|..... +|.+|+|||||+ ||..+-..+. +. ++..+..||+|.
T Consensus 469 ~Gl~g~la~~s-i~~LSGGQKsrvafA~~~~~--~PhlLVLDEPTNhLD~dsl~AL~-~A---l~~F~GGVv~VS 536 (582)
T KOG0062|consen 469 FGLSGELALQS-IASLSGGQKSRVAFAACTWN--NPHLLVLDEPTNHLDRDSLGALA-KA---LKNFNGGVVLVS 536 (582)
T ss_pred cCCCchhhhcc-ccccCCcchhHHHHHHHhcC--CCcEEEecCCCccccHHHHHHHH-HH---HHhcCCcEEEEE
Confidence 99987655443 556777775 788877777 999999999999 9998876555 44 444344566774
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.35 E-value=3.6e-12 Score=102.55 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=67.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-CCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
+++|+|||||||||+++.+....-...|.+.... +. ..++ .+...+. . +....+ ++
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~---~~g~~~~~~~~~----~--i~~~~~-------------lS 79 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV---KAGCIVAAVSAE----L--IFTRLQ-------------LS 79 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc---cCCCcceeeEEE----E--ehheee-------------cc
Confidence 6899999999999999998776655554444311 10 1111 0100000 0 111111 22
Q ss_pred hcHH--HHHHHHHhcCC--CCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 83 DNLD--DWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 83 ~~~s--~~la~~l~~~~--~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
++++ ..+++++.... +|+++++|||+. +|+..+..+. +.+.++.+++.+++++.
T Consensus 80 ~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~-~~l~~~~~~~~~vii~T 138 (162)
T cd03227 80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA-EAILEHLVKGAQVIVIT 138 (162)
T ss_pred ccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEc
Confidence 2222 77888887522 689999999999 9999999998 66666644466776553
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.34 E-value=3.3e-12 Score=104.54 Aligned_cols=50 Identities=10% Similarity=0.085 Sum_probs=41.1
Q ss_pred HHHHHHHhc--CCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 87 DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 87 ~~la~~l~~--~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
+.++++++. ..+|+++++|||++ +|+..+..+. +.++++.+.|.+++++.
T Consensus 103 ~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~g~tiIiiS 155 (178)
T cd03239 103 SALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKHTSQFIVIT 155 (178)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEE
Confidence 888888752 12899999999999 9999999999 88888876677777664
No 405
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=6.1e-12 Score=124.94 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=56.2
Q ss_pred HHHHHhCCCCC-CchhhhHHhhhhcHH--HHHHHHHhcC-CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEE
Q 026589 61 DVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (236)
Q Consensus 61 ~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~-~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (236)
++++.+||+.. .+. ....++++.. +.||++++.- .+|+++||||||+ ||+..+..++ ++++++.+.|.++++
T Consensus 810 ~~L~~~gL~~l~l~~--~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 810 QTLCDVGLGYIKLGQ--PATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHcCCCchhhcC--ccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 34556666532 111 1234555543 8899999851 1489999999999 9999999999 999999877888887
Q ss_pred EEeccccccc
Q 026589 136 VYLLDSQFIT 145 (236)
Q Consensus 136 v~l~d~~~~~ 145 (236)
+. |...
T Consensus 887 i~----H~~~ 892 (924)
T TIGR00630 887 IE----HNLD 892 (924)
T ss_pred Ee----CCHH
Confidence 74 6654
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.30 E-value=1.9e-11 Score=110.01 Aligned_cols=133 Identities=18% Similarity=0.190 Sum_probs=98.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhC--------CCCCCceEEEeccCCCCCC-CCCCC---cCCHHHhhh--------HHH
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRH--------CETVRRTMHIVNLDPAAEN-FDYPV---AMDIRELIS--------LED 61 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~--------l~~~~G~i~i~~~d~~~~~-~~~~~---~~~i~~~i~--------~~~ 61 (236)
+-+++|+|++||||||+++.+.|. ++|++|.|.+.-...+.-- -.+.+ ..++-+.+. ..+
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Ave 488 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVE 488 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHH
Confidence 457899999999999999999996 5889999987532222100 01111 223333332 678
Q ss_pred HHHHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEE
Q 026589 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVY 137 (236)
Q Consensus 62 ~l~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~ 137 (236)
++++.|+..--..+.+...++.++. ..||.+++. .|.+++.||-.+ ||..+...+. +-+.++++ .|.|+++++
T Consensus 489 ILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~AhLD~~TA~rVA-rkiselaRe~giTlivvT 565 (593)
T COG2401 489 ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAAHLDELTAVRVA-RKISELAREAGITLIVVT 565 (593)
T ss_pred HHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhhhcCHHHHHHHH-HHHHHHHHHhCCeEEEEe
Confidence 9999999875444445567777775 899999999 999999999999 9999999999 66777775 588887775
No 407
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=7.5e-12 Score=105.27 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh--CCCCCCceEEEeccCCCCCCCCC-CCcCCHHHhhhHHHHHHHhCCCCCCchhhhHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g--~l~~~~G~i~i~~~d~~~~~~~~-~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~ 79 (236)
-.++|.||||+|||||+|.+.. .+ +..|.+.... .-.++| .+. +.. ++..........
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~----~~~~~~~d~i------------~~~--l~~~~si~~~~S 90 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD----SATIGLVDKI------------FTR--MSSRESVSSGQS 90 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC----CcEEeeeeee------------eee--eCCccChhhccc
Confidence 3578999999999999999983 33 4455543321 111222 111 000 011100000011
Q ss_pred hhhhcHH-HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026589 80 HLEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (236)
Q Consensus 80 ~~~~~~s-~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (236)
.+...++ +.++.+++. +|+++|+|||+. +|+.....+...+++++.+.
T Consensus 91 ~f~~el~~l~~~l~~~~--~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~ 140 (213)
T cd03281 91 AFMIDLYQVSKALRLAT--RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR 140 (213)
T ss_pred hHHHHHHHHHHHHHhCC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence 2222232 566666777 999999999999 99987666654788888654
No 408
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.29 E-value=3e-11 Score=105.03 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (236)
..++|+||||||||||++.++|.+.|..|++.++|.++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence 357999999999999999999999999999999998764
No 409
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=8.6e-12 Score=104.24 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccC-CCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLD-PAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-~~G~i~i~~~d-~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
-+++|+|||||||||+++.++++.-- .-| .. |+. ...+++ .++++..++...+.... ...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G------~~vpa~-----~~~l~~-----~d~I~~~~~~~d~~~~~--~S~ 91 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIG------CFVPAE-----YATLPI-----FNRLLSRLSNDDSMERN--LST 91 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcC------CCcchh-----hcCccC-----hhheeEecCCccccchh--hhH
Confidence 36899999999999999999976311 011 11 111 111222 23345555555432221 233
Q ss_pred hhhcHH-HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026589 81 LEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 81 ~~~~~s-~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
++.+++ ...+.+++. +|+++++|||+. +|+.....+...+++.+.+.+.+++++
T Consensus 92 fs~e~~~~~~il~~~~--~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~ 147 (204)
T cd03282 92 FASEMSETAYILDYAD--GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFA 147 (204)
T ss_pred HHHHHHHHHHHHHhcC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 445543 223333445 899999999998 999877776657888888778777666
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.28 E-value=9.9e-12 Score=123.68 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=57.3
Q ss_pred HHHHHhCCCCC-CchhhhHHhhhhcHH--HHHHHHHhcCCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcE
Q 026589 61 DVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (236)
Q Consensus 61 ~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p---~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (236)
+.++.+||+.. .+.. ...++++.+ +.||++++. +| +++|||||++ ||+..+..++ ++++++.++|.+|
T Consensus 812 ~~L~~vgL~~l~l~~~--~~tLSgGEkQRl~LAraL~~--~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~TV 886 (943)
T PRK00349 812 QTLVDVGLGYIKLGQP--ATTLSGGEAQRVKLAKELSK--RSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNTV 886 (943)
T ss_pred HHHHHCCCCcccccCC--cccCCHHHHHHHHHHHHHhc--CCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 34555677641 1111 234556544 899999998 88 9999999999 9999999999 9999997778888
Q ss_pred EEEEeccccccc
Q 026589 134 CAVYLLDSQFIT 145 (236)
Q Consensus 134 i~v~l~d~~~~~ 145 (236)
+++. |...
T Consensus 887 Iiit----H~~~ 894 (943)
T PRK00349 887 VVIE----HNLD 894 (943)
T ss_pred EEEe----cCHH
Confidence 8774 6654
No 411
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.25 E-value=2.5e-11 Score=102.74 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcC-CHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAM-DIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~-~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
-+++|.||||||||||++.++-.. + .+......|... .+. -+++++..+++.+.... ....+
T Consensus 31 ~~~~l~G~n~~GKstll~~i~~~~--------~----la~~g~~vpa~~~~~~---~~~~il~~~~l~d~~~~--~lS~~ 93 (222)
T cd03285 31 RFLIITGPNMGGKSTYIRQIGVIV--------L----MAQIGCFVPCDSADIP---IVDCILARVGASDSQLK--GVSTF 93 (222)
T ss_pred eEEEEECCCCCChHHHHHHHHHHH--------H----HHHhCCCcCcccEEEe---ccceeEeeeccccchhc--CcChH
Confidence 368999999999999999987320 0 000000001100 000 13445666666644211 11223
Q ss_pred hhcHHHHHHHHH--hcCCCCCEEEEeCC---Cc-ccHHhHHHHHHHHHHHHHh-CCCcEEEEEecccccccchhhHhhhh
Q 026589 82 EDNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGC 154 (236)
Q Consensus 82 ~~~~s~~la~~l--~~~~~p~~lllDEP---t~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~~~~ 154 (236)
..++ ..+++++ +. +|+++|+||| |+ +|...... .+++.+.+ .+.+++++ +|. .+..++++.+
T Consensus 94 ~~e~-~~~a~il~~~~--~~sLvLLDEp~~gT~~lD~~~~~~---~il~~l~~~~~~~vlis----TH~-~el~~~~~~~ 162 (222)
T cd03285 94 MAEM-LETAAILKSAT--ENSLIIIDELGRGTSTYDGFGLAW---AIAEYIATQIKCFCLFA----THF-HELTALADEV 162 (222)
T ss_pred HHHH-HHHHHHHHhCC--CCeEEEEecCcCCCChHHHHHHHH---HHHHHHHhcCCCeEEEE----ech-HHHHHHhhcC
Confidence 3334 6777777 56 9999999999 88 99988754 44566654 46676555 363 5555665543
No 412
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.23 E-value=6.9e-11 Score=109.98 Aligned_cols=127 Identities=14% Similarity=0.137 Sum_probs=83.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCCCCcCCHHHhh-----------------hHHH
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDYPVAMDIRELI-----------------SLED 61 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----~~~~~~~~~~i~~~i-----------------~~~~ 61 (236)
-+.|+||||||||+|+|++.|+.+..+|++..-...-.. ..-||.+.-|.||.+ .+.+
T Consensus 463 ~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r 542 (659)
T KOG0060|consen 463 NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILR 542 (659)
T ss_pred eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHH
Confidence 478999999999999999999999999988764321000 111221111333332 2555
Q ss_pred HHHHhCCCCC----C-----chhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC
Q 026589 62 VMEELGLGPN----G-----GLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (236)
Q Consensus 62 ~l~~~~l~~~----~-----~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (236)
.++.++|+.. + .....++.++.| ++.++||.+.. +|++-||||-|+ ++......+. +. +++.
T Consensus 543 ~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~--kPk~AiLDE~TSAv~~dvE~~~Y-r~---~r~~ 616 (659)
T KOG0060|consen 543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH--KPKFAILDECTSAVTEDVEGALY-RK---CREM 616 (659)
T ss_pred HHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc--CCceEEeechhhhccHHHHHHHH-HH---HHHc
Confidence 5666655531 1 112234445443 44899999999 999999999998 9988876666 44 3445
Q ss_pred CCcEEEE
Q 026589 130 NFNVCAV 136 (236)
Q Consensus 130 ~~~ii~v 136 (236)
|+|.+.|
T Consensus 617 giT~iSV 623 (659)
T KOG0060|consen 617 GITFISV 623 (659)
T ss_pred CCeEEEe
Confidence 8888777
No 413
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.20 E-value=7.1e-11 Score=99.53 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=59.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCCCCCCCC----CcCCHHHhhhHHHHHHHhCCCCCCchhhhH
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~-~~G~i~i~~~d~~~~~~~~~----~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~ 78 (236)
+++|+||||||||||+|.+++..-. ..|.. .+.....+++. +.+++.+.+. .+ .
T Consensus 32 ~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~----vp~~~~~i~~~~~i~~~~~~~~~ls---------~g--------~ 90 (216)
T cd03284 32 ILLITGPNMAGKSTYLRQVALIALLAQIGSF----VPASKAEIGVVDRIFTRIGASDDLA---------GG--------R 90 (216)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhccCCe----eccccceecceeeEeccCCchhhhc---------cC--------c
Confidence 5789999999999999999874311 11211 01111222321 1222222211 00 0
Q ss_pred HhhhhcHHHHHHHHHhcCCCCCEEEEeCC---Cc-ccHHhHHHHHHHHHHHHHhC-CCcEEEEE
Q 026589 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVY 137 (236)
Q Consensus 79 ~~~~~~~s~~la~~l~~~~~p~~lllDEP---t~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~ 137 (236)
..+...+ ..++.++....+|+++|+||| |+ +|.... .. .+++.+.+. +.++++++
T Consensus 91 s~f~~e~-~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~-~il~~l~~~~~~~vi~~T 150 (216)
T cd03284 91 STFMVEM-VETANILNNATERSLVLLDEIGRGTSTYDGLSI--AW-AIVEYLHEKIGAKTLFAT 150 (216)
T ss_pred chHHHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HH-HHHHHHHhccCCcEEEEe
Confidence 1122222 445555543338999999999 87 887542 22 567777665 77776663
No 414
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.20 E-value=6.1e-11 Score=99.20 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCCEEEEeCCC-----c-ccHHhHHHHHHHHHHHHHh
Q 026589 87 DWLAEELDNYLDDDYLVFDCPG-----Q-IELFTHVPVLRNFVDHLKS 128 (236)
Q Consensus 87 ~~la~~l~~~~~p~~lllDEPt-----~-LD~~~~~~~~~~ll~~l~~ 128 (236)
.+||++++. +|+++++|||| + ||+..+..+. ++++++++
T Consensus 161 ~~ia~~l~~--~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~~ 205 (215)
T PTZ00132 161 LWLARRLTN--DPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAAN 205 (215)
T ss_pred HHHHHHHhh--cccceecCCcccCCCccccCHHHHHHHH-HHHHHHhh
Confidence 799999999 99999999999 9 9999999999 99998864
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=4e-11 Score=108.75 Aligned_cols=159 Identities=13% Similarity=0.108 Sum_probs=91.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCCCCCC-------------------------C-CCcCCHHHh
Q 026589 5 QLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAAENFD-------------------------Y-PVAMDIREL 56 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~--l~~~~G~i~i~~~d~~~~~~~-------------------------~-~~~~~i~~~ 56 (236)
++++||||-|||||++.|+.- --|..=.|.+..+.+.....+ + .-+.+..+.
T Consensus 293 YGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaEr 372 (807)
T KOG0066|consen 293 YGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAER 372 (807)
T ss_pred ecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 589999999999999999873 223333444444333111000 0 001111111
Q ss_pred hh-----------------HHHHHHHhCCCCCCchhhhHHhhhhcH--HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHH
Q 026589 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (236)
Q Consensus 57 i~-----------------~~~~l~~~~l~~~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~ 116 (236)
+. +..++.-+|+.+.-..+.+ ..++++- +++|||||.. +|-+|.|||||+ ||+.+..
T Consensus 373 l~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt-~kFSGGWRMRvSLARALfl--EPTLLMLDEPTNHLDLNAVI 449 (807)
T KOG0066|consen 373 LKEVADELRAIGADSAEARARRILAGLGFSKEMQERPT-TKFSGGWRMRVSLARALFL--EPTLLMLDEPTNHLDLNAVI 449 (807)
T ss_pred HHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCc-cccCCceeeehhHHHHHhc--CceeeeecCCccccccceee
Confidence 11 3344444444433211212 2344443 3999999999 999999999999 9998876
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeeccc
Q 026589 117 PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (236)
Q Consensus 117 ~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk 174 (236)
++- +.++. +.+|+++|. |.-.-...+|.-++-.....+...-.....|.|
T Consensus 450 WLd-NYLQg---WkKTLLIVS----HDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKK 499 (807)
T KOG0066|consen 450 WLD-NYLQG---WKKTLLIVS----HDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKK 499 (807)
T ss_pred ehh-hHHhh---hhheeEEEe----cccchHHHHHHHHhhhhhhhhhhhcchHHHHHH
Confidence 555 55444 456787774 544434455655555555555555444444444
No 416
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.15 E-value=3.7e-10 Score=103.58 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-CC--------CCCCC-C---------CcCCHHHhhh-----
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AA--------ENFDY-P---------VAMDIRELIS----- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~-~~--------~~~~~-~---------~~~~i~~~i~----- 58 (236)
-+++|.|-.|-|-+.|+.+|+|+.++.+|+|.++|.+. .. ..++| | .++++.+++-
T Consensus 285 EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~ 364 (501)
T COG3845 285 EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD 364 (501)
T ss_pred cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcc
Confidence 58999999999999999999999999899999999885 21 22333 1 2344544432
Q ss_pred ------------------HHHHHHHhCCCCCCchhhhHHhhhhc-H-HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHH
Q 026589 59 ------------------LEDVMEELGLGPNGGLIYCMEHLEDN-L-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (236)
Q Consensus 59 ------------------~~~~l~~~~l~~~~~~~~~~~~~~~~-~-s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~ 117 (236)
..+++++|+..+.+.... ...++++ + ++.+||.+.. +|++||+-+||. ||..+...
T Consensus 365 ~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~-a~~LSGGNqQK~IlaREl~~--~p~lLI~~qPTrGLDvgA~~~ 441 (501)
T COG3845 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGNQQKLILARELAR--RPDLLIAAQPTRGLDVGAIEF 441 (501)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc-hhhcCCcceehhhhhhhhcc--CCCEEEEcCCCccccHHHHHH
Confidence 677888998874432221 2344443 3 3889999999 999999999999 99999988
Q ss_pred HHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhh
Q 026589 118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (236)
Q Consensus 118 ~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~ 164 (236)
+. +.+.+.++.|+.|+++. ..+.+....++++.++..+.+.-
T Consensus 442 I~-~~l~e~r~~G~AVLLiS----~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 442 IH-ERLLELRDAGKAVLLIS----EDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred HH-HHHHHHHhcCCEEEEEe----hhHHHHHHhhheeeeeeCCceec
Confidence 88 66777778899998774 77777777776555555554443
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.15 E-value=7.5e-11 Score=115.73 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=69.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEeccCCCCC--CCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~-l~~~~G~i~i~~~d~~~~--~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~ 79 (236)
-.++|+||||+|||||+|.++|. +.+..|-.. |+.. .++|.. .+.. .+++.......+.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~V-----pa~~~~~~~~~d-----------~i~~--~i~~~~si~~~LS 384 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPI-----PANEHSEIPYFE-----------EIFA--DIGDEQSIEQNLS 384 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCc-----cCCccccccchh-----------heee--ecChHhHHhhhhh
Confidence 46899999999999999999998 555555211 1211 223211 0110 1111111111123
Q ss_pred hhhhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026589 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 80 ~~~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
.++.++ ..++..+....+|+++|+|||++ +|+.....+...+++.+.+.|.+++++
T Consensus 385 tfS~~m-~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viit 441 (771)
T TIGR01069 385 TFSGHM-KNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLIT 441 (771)
T ss_pred HHHHHH-HHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 344555 33333333222899999999999 999999988547888887777777655
No 418
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.11 E-value=2e-10 Score=106.03 Aligned_cols=124 Identities=18% Similarity=0.214 Sum_probs=74.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-CC-----cCCHHHhhh-----------------HH
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PV-----AMDIRELIS-----------------LE 60 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-~~-----~~~i~~~i~-----------------~~ 60 (236)
-+.|+||||||||+|+|++.|+.+...|...+- ...++-| || .-+.||.|- ..
T Consensus 510 hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~ 585 (728)
T KOG0064|consen 510 HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLE 585 (728)
T ss_pred eEEEECCCCccHHHHHHHHhccCcccCCeeecC----CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHH
Confidence 367999999999999999999998877766542 1111222 11 011222211 22
Q ss_pred HHHHHhCCCC-------CCchhhhHHhhhhcH--HHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCC
Q 026589 61 DVMEELGLGP-------NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (236)
Q Consensus 61 ~~l~~~~l~~-------~~~~~~~~~~~~~~~--s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (236)
.++..+.|.. ..+.....+.+++|- +..+||.+-+ +|+|-+|||-|+ +-+.....+. + ..+..|
T Consensus 586 ~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yH--rPkyalLDEcTsAvsidvE~~i~-~---~ak~~g 659 (728)
T KOG0064|consen 586 AILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYH--RPKYALLDECTSAVSIDVEGKIF-Q---AAKDAG 659 (728)
T ss_pred HHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhc--CcchhhhhhhhcccccchHHHHH-H---HHHhcC
Confidence 2222222210 112223345566553 3888999888 999999999997 6666554444 3 344468
Q ss_pred CcEEEEE
Q 026589 131 FNVCAVY 137 (236)
Q Consensus 131 ~~ii~v~ 137 (236)
.+.+.+.
T Consensus 660 i~llsit 666 (728)
T KOG0064|consen 660 ISLLSIT 666 (728)
T ss_pred ceEEEee
Confidence 8887664
No 419
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.10 E-value=4e-10 Score=95.39 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-CCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g-~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
-+++|+||||+||||+++.+++ .+.+..|...... . -.++|... ++-.++-..+ .......+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~---~~~~~~~~-----------i~~~~~~~d~--~~~~~StF 94 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S---ATLSIFDS-----------VLTRMGASDS--IQHGMSTF 94 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c---eEEeccce-----------EEEEecCccc--cccccchH
Confidence 3678999999999999999999 6777888755431 1 12222111 1111111110 00001223
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCcEEEEE
Q 026589 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVY 137 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~ 137 (236)
...+ ..++..+....+++++|+|||+. .++.....+...+++.+.+. +.++++++
T Consensus 95 ~~e~-~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~T 151 (222)
T cd03287 95 MVEL-SETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVT 151 (222)
T ss_pred HHHH-HHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEc
Confidence 3333 44444444333899999999987 77666565443788888765 66776653
No 420
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=3e-10 Score=99.07 Aligned_cols=55 Identities=16% Similarity=-0.071 Sum_probs=40.6
Q ss_pred hhhcHH--HHHHHHHhcC--CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 81 LEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 81 ~~~~~s--~~la~~l~~~--~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
++++.. +.+|++++.. .+|+++++|||++ +|+..+..+. +.++++.+ +.+++++.
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~-~~tii~is 230 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSR-SHQVLCIT 230 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEe
Confidence 445443 6666654321 2899999999999 9999999999 88888754 66776664
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.05 E-value=1.4e-09 Score=91.31 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhcHH--H--HHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcE
Q 026589 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--D--WLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s--~--~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (236)
+.+.+...++.+. .+++|.+ . ++.-|+..+.+.++++||||.+ ||...+..+. ++++++.+ +.-+
T Consensus 123 ~~~~l~~~~i~~~--------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~-~~Q~ 192 (220)
T PF02463_consen 123 LEELLPEVGISPE--------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSK-QSQF 192 (220)
T ss_dssp HHHHHHCTTTTTT--------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTT-TSEE
T ss_pred ccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccccc-cccccccc-cccc
Confidence 5566777777765 3555544 2 2222333444778999999999 9999999999 99998854 3556
Q ss_pred EEEE
Q 026589 134 CAVY 137 (236)
Q Consensus 134 i~v~ 137 (236)
++++
T Consensus 193 ii~T 196 (220)
T PF02463_consen 193 IITT 196 (220)
T ss_dssp EEE-
T ss_pred cccc
Confidence 5553
No 422
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.02 E-value=2.8e-10 Score=114.31 Aligned_cols=163 Identities=16% Similarity=0.196 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC---CCceEEEeccCCCC----CCCCC-------CCcCCHHHhhh----------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS---------- 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~---~~G~i~i~~~d~~~----~~~~~-------~~~~~i~~~i~---------- 58 (236)
-.+.++||+|||||||+++++|-... ..|+|.++|.+... ....| .+.+|+|+.+.
T Consensus 142 ~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~ 221 (1391)
T KOG0065|consen 142 EMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGS 221 (1391)
T ss_pred ceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCcc
Confidence 35789999999999999999997643 35699999987532 12223 22344555443
Q ss_pred --------------HHHHHHHhCCCCCCchhhhH---HhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHH
Q 026589 59 --------------LEDVMEELGLGPNGGLIYCM---EHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (236)
Q Consensus 59 --------------~~~~l~~~~l~~~~~~~~~~---~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~ 118 (236)
.+.+++.+||....+....- .-.++|.+ +.++.+++. +++++..||+|. ||..+..++
T Consensus 222 r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~--~~~~~~~De~t~GLDSsTal~i 299 (1391)
T KOG0065|consen 222 RYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG--PASILFWDEITRGLDSSTAFQI 299 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeec--CcceeeeecccccccHHHHHHH
Confidence 45788999998643332211 11333333 889999999 999999999999 999999999
Q ss_pred HHHHHHHHHhC-CCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeee
Q 026589 119 LRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (236)
Q Consensus 119 ~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~v 171 (236)
. +.++++.+. +.+.++.- + +-..+.-...+.+.++..|.+....|.-++
T Consensus 300 i-k~lr~~a~~~~~t~~vsi-~--Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~ 349 (1391)
T KOG0065|consen 300 I-KALRQLAHITGATALVSI-L--QPSPEIYDLFDDVILLSEGYQIYQGPRDEV 349 (1391)
T ss_pred H-HHHHHHHhhhcceEEEEe-c--cCChHHHHhhhheeeeeccceEEeccHHHH
Confidence 9 999999874 55554332 1 333455555565555556665555555433
No 423
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.01 E-value=3.6e-09 Score=89.97 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCcHHHH-HHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCC-----ch--
Q 026589 3 YAQLVIGPAGSGKSTY-CSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG-----GL-- 74 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTL-l~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~-----~~-- 74 (236)
.+++|.|||||||||| ++.+++..++..+.+++.... +..+. .+.++.+|..... ..
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~------------~~~~~---~~~~~~~g~~~~~~~~~~~l~~ 89 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL------------TTTEF---IKQMMSLGYDINKKLISGKLLY 89 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC------------CHHHH---HHHHHHhCCchHHHhhcCcEEE
Confidence 4789999999999999 588888776654444444221 11111 1111222221100 00
Q ss_pred hhhHHhhhhc--HH---HHHHHHH-hcCCCCCEEEEeCCCc-c----cHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 75 IYCMEHLEDN--LD---DWLAEEL-DNYLDDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 75 ~~~~~~~~~~--~s---~~la~~l-~~~~~p~~lllDEPt~-L----D~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
.......... .+ ..+.... .. +|+++++|||++ + |+...+.+. ++++.++++|.+++++|
T Consensus 90 ~~~~~~~~~~~~~~~~l~~il~~~~~~--~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~~~g~tvi~t~ 160 (230)
T PRK08533 90 IPVYPLLSGNSEKRKFLKKLMNTRRFY--EKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRISSLNKVIILTA 160 (230)
T ss_pred EEecccccChHHHHHHHHHHHHHHHhc--CCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 0000000000 11 1111121 23 799999999998 7 777777787 88888877777766654
No 424
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=1.1e-08 Score=83.69 Aligned_cols=126 Identities=16% Similarity=0.251 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEec-cCCC-C-----------CC--CCCC-CcCCHHHhhh-HHHHH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVN-LDPA-A-----------EN--FDYP-VAMDIRELIS-LEDVM 63 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~--~~G~i~i~~-~d~~-~-----------~~--~~~~-~~~~i~~~i~-~~~~l 63 (236)
-++.|+|.||||||||+.+|+--..- .+|.=-+.+ .++. . .+ .+|+ ..-+...... ++|+.
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~ 117 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEAD 117 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhh
Confidence 36889999999999999998754322 222211111 1111 0 00 1110 0011111111 45555
Q ss_pred HHhCCCCCCchhhhHHhhhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 64 ~~~~l~~~~~~~~~~~~~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
.+.+.+++. +...+.+-+ ..+.+.+ . ..-+.|||||-+ |-+..+.+++ .+++++.+.|..+|+++
T Consensus 118 ~e~~~~~~s-----Lh~~SHGEsf~~i~~~rf-~--~~GiYiLDEPEa~LSp~RQlell-a~l~~la~sGaQ~IiAT 185 (233)
T COG3910 118 GEANYGGRS-----LHHMSHGESFLAIFHNRF-N--GQGIYILDEPEAALSPSRQLELL-AILRDLADSGAQIIIAT 185 (233)
T ss_pred hhcccCCcc-----hhhhccchHHHHHHHHHh-c--cCceEEecCccccCCHHHHHHHH-HHHHHHHhcCCeEEEEe
Confidence 555544432 233334432 2333333 2 567999999999 9999999999 99999998887777664
No 425
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.99 E-value=2.9e-09 Score=83.77 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=66.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhH--Hhh
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM--EHL 81 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~--~~~ 81 (236)
+++|.||||+||||+++.+++...+..+.+.+.+.+..... ..... ......+...+....... ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 69 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE--------LTERL---IGESLKGALDNLIIVFATADDPA 69 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH--------HHHHH---hhhhhccccccEEEEEcCCCCCc
Confidence 36899999999999999999998888888888765432110 11100 001111100000000000 000
Q ss_pred hhcH-HHHHHHHHhcCCCCCEEEEeCCCc-ccHHh----------HHHHHHHHHHHHHhCCCcEEEEE
Q 026589 82 EDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFT----------HVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 82 ~~~~-s~~la~~l~~~~~p~~lllDEPt~-LD~~~----------~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
.... ..+.+.+... +|+++++|||+. ++... ...+. ++....++.+.+++++.
T Consensus 70 ~~~~~~~~~~~~~~~--~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~~~~~vv~~~ 134 (165)
T cd01120 70 AARLLSKAERLRERG--GDDLIILDELTRLVRALREIREGYPGELDEELR-ELLERARKGGVTVIFTL 134 (165)
T ss_pred HHHHHHHHHHHHhCC--CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHH-HHHHHHhcCCceEEEEE
Confidence 0011 1344555555 899999999997 54432 33333 66666655688888774
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.97 E-value=2e-09 Score=97.47 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEEEeccCCCCCCCCCCCcCCHHHhhh------------HHHHHHHhCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELIS------------LEDVMEELGLG 69 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G-~i~i~~~d~~~~~~~~~~~~~i~~~i~------------~~~~l~~~~l~ 69 (236)
.++..+|.||.|||||++.++|.++|+.| ++-..+.....+.+.-...-++|+.+. +.++|+-+.++
T Consensus 368 eiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie 447 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIE 447 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHH
Confidence 35678999999999999999999999876 333322222222211111224554432 56677666555
Q ss_pred CCCchhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHH-hCCCcEEEE
Q 026589 70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (236)
Q Consensus 70 ~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v 136 (236)
.-.++. ...+++| ++++++..+.. .+++++.|||.+ ||...+.... +.+++.- +.+++-.+|
T Consensus 448 ~i~dqe--vq~lSggelQRval~KOGGK--pAdvYliDEpsAylDSeQRi~As-kvikRfilhakktafvV 513 (592)
T KOG0063|consen 448 NIIDQE--VQGLSGGELQRVALALCLGK--PADVYLIDEPSAYLDSEQRIIAS-KVIKRFILHAKKTAFVV 513 (592)
T ss_pred HHHhHH--hhcCCchhhHHHHHHHhcCC--CCceEEecCchhhcChHHHHHHH-HHHHHHHHhccchhhhh
Confidence 432111 1223333 23788888877 899999999999 9999988887 6666643 445555444
No 427
>PRK13695 putative NTPase; Provisional
Probab=98.91 E-value=9.7e-10 Score=89.20 Aligned_cols=123 Identities=17% Similarity=0.254 Sum_probs=61.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-----CCCCCCCCcCCHHHhh-hHHHHHHHhCC-CCCC--ch
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDYPVAMDIRELI-SLEDVMEELGL-GPNG--GL 74 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~-----~~~~~~~~~~~i~~~i-~~~~~l~~~~l-~~~~--~~ 74 (236)
-++|+|+||||||||++.+.+.+.+ .| +.+.+.-.. .....+ ++.+.. .....+...+. +... ..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVGGFYTEEVREGGKRIGF----KIIDLDTGEEGILARVGFPSRPRVGKY 75 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEEEcHHHHhcCCccce----EEEEcCCCCeEEccccCCCCCCceeeE
Confidence 3689999999999999999887665 34 232222110 011111 111100 00111222222 1111 00
Q ss_pred hhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 75 ~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
....+-+ ......+++.... +|+++++|||+.++... .... +.+.++.+.+.+++++.
T Consensus 76 ~~~lsgl-e~~~~~l~~~~l~--~~~~lllDE~~~~e~~~-~~~~-~~l~~~~~~~~~~i~v~ 133 (174)
T PRK13695 76 VVNLEDL-ERIGIPALERALE--EADVIIIDEIGKMELKS-PKFV-KAVEEVLDSEKPVIATL 133 (174)
T ss_pred EEehHHH-HHHHHHHHHhccC--CCCEEEEECCCcchhhh-HHHH-HHHHHHHhCCCeEEEEE
Confidence 1011001 1111444444455 89999999987665555 3344 66666656677877664
No 428
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.88 E-value=2.3e-08 Score=83.11 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=59.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~-~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
.++|.||+||||||+++.+.+.+.+. .|.|...+.++ . ...+.. +.. +.....+.. .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~-E--~~~~~~---~~~------i~q~~vg~~----------~ 60 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI-E--FVHESK---RSL------INQREVGLD----------T 60 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc-c--ccccCc---cce------eeecccCCC----------c
Confidence 57899999999999999999888754 56766655332 1 111100 000 011111111 0
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026589 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
..+..++++++.. +|+++++|||. |..... ..++ ....|..++.+
T Consensus 61 ~~~~~~i~~aLr~--~pd~ii~gEir--d~e~~~----~~l~-~a~~G~~v~~t 105 (198)
T cd01131 61 LSFENALKAALRQ--DPDVILVGEMR--DLETIR----LALT-AAETGHLVMST 105 (198)
T ss_pred cCHHHHHHHHhcC--CcCEEEEcCCC--CHHHHH----HHHH-HHHcCCEEEEE
Confidence 1233677888888 99999999997 333222 3333 34567776544
No 429
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.85 E-value=1.5e-08 Score=89.89 Aligned_cols=123 Identities=16% Similarity=0.167 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
..++|+||+|||||||++++++++++..|.+.+. ++..-....+....+ . .. . ...+. ..
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~~~~~~l---~-~~----~---~~~~~-------~~ 204 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPHPNYVHL---F-YS----K---GGQGL-------AK 204 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCCCCEEEE---E-ec----C---CCCCc-------Cc
Confidence 4689999999999999999999999988877764 221111111100000 0 00 0 00000 00
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHH
Q 026589 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (236)
-.+...+..++.. +|+++++|||.. .+.+ .+++.+. .|...+++.+ |.. ++...++++.....
T Consensus 205 ~~~~~~l~~~Lr~--~pd~ii~gE~r~------~e~~-~~l~a~~-~g~~~~i~T~---Ha~-~~~~~~~Rl~~l~~ 267 (308)
T TIGR02788 205 VTPKDLLQSCLRM--RPDRIILGELRG------DEAF-DFIRAVN-TGHPGSITTL---HAG-SPEEAFEQLALMVK 267 (308)
T ss_pred cCHHHHHHHHhcC--CCCeEEEeccCC------HHHH-HHHHHHh-cCCCeEEEEE---eCC-CHHHHHHHHHHHhh
Confidence 1122456667777 999999999996 3455 6677765 4544322222 332 24554555554433
No 430
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.84 E-value=2.9e-08 Score=80.71 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=32.1
Q ss_pred CCCEEEEeCCCc-cc---HHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 98 DDDYLVFDCPGQ-IE---LFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 98 ~p~~lllDEPt~-LD---~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
+|+++++|||++ +| ...+..+. ++++.+++.|.+++++.
T Consensus 95 ~~~~lviD~~~~~~~~~~~~~~~~i~-~l~~~l~~~g~tvi~v~ 137 (187)
T cd01124 95 KAKRVVIDSVSGLLLMEQSTARLEIR-RLLFALKRFGVTTLLTS 137 (187)
T ss_pred CCCEEEEeCcHHHhhcChHHHHHHHH-HHHHHHHHCCCEEEEEe
Confidence 899999999999 88 66666666 88888887888887764
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.83 E-value=1.1e-08 Score=100.73 Aligned_cols=112 Identities=14% Similarity=0.209 Sum_probs=66.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEeccCCCCC--CCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~-l~~~~G~i~i~~~d~~~~--~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
+++|.|||++||||++|.+... +-+..|-. -|+.+ .++++. . ++. .++...........
T Consensus 329 ~~iITGpN~gGKTt~lktigl~~~maq~G~~-----vpa~~~~~i~~~~------~-----i~~--~ig~~~si~~~lSt 390 (782)
T PRK00409 329 VLVITGPNTGGKTVTLKTLGLAALMAKSGLP-----IPANEPSEIPVFK------E-----IFA--DIGDEQSIEQSLST 390 (782)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHHHhCCC-----cccCCCccccccc------e-----EEE--ecCCccchhhchhH
Confidence 6789999999999999999653 22222210 12221 223211 1 111 12211111111234
Q ss_pred hhhcHH--HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026589 81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 81 ~~~~~s--~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
++.++. ..+++++ . +|+++|+|||+. +|+.....+...+++.+.+.|.+++++
T Consensus 391 fS~~m~~~~~Il~~~-~--~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit 446 (782)
T PRK00409 391 FSGHMTNIVRILEKA-D--KNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT 446 (782)
T ss_pred HHHHHHHHHHHHHhC-C--cCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 555552 4444444 4 899999999998 999999888757888887777777665
No 432
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.82 E-value=3.9e-08 Score=102.93 Aligned_cols=57 Identities=14% Similarity=0.018 Sum_probs=46.3
Q ss_pred hhhhc--HHHHHHHHHhcC-CCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 80 HLEDN--LDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 80 ~~~~~--~s~~la~~l~~~-~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
.++++ +++-||..|..- ..+.++||||||. |++...+.++ +++++|...|.||++|-
T Consensus 1699 tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tvivie 1759 (1809)
T PRK00635 1699 SLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVIYID 1759 (1809)
T ss_pred ccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEEEEe
Confidence 45554 348889888751 1268999999999 9999999999 99999998899998884
No 433
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.81 E-value=1.7e-08 Score=93.36 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhh----hHHHHHHHhCCCCCCchhhhH
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI----SLEDVMEELGLGPNGGLIYCM 78 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i----~~~~~l~~~~l~~~~~~~~~~ 78 (236)
-.++|+|+||+|||||+++|+|+.+++.|.|.+.|+.... +.+.+ ....+.+...+-...... ..
T Consensus 159 q~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~e----------v~e~~~~~l~~~~l~r~v~vv~~~~~~-~~ 227 (438)
T PRK07721 159 QRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGRE----------VREFIERDLGPEGLKRSIVVVATSDQP-AL 227 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCcc----------HHHHHHhhcChhhhcCeEEEEECCCCC-HH
Confidence 4689999999999999999999999999999998765421 11100 000000000000000000 00
Q ss_pred HhhhhcH-HHHHHHHHhcCCCCCEEEEe-----------------CC-C-c-ccHHhHHHHHHHHHHHHHh--CC-CcEE
Q 026589 79 EHLEDNL-DDWLAEELDNYLDDDYLVFD-----------------CP-G-Q-IELFTHVPVLRNFVDHLKS--RN-FNVC 134 (236)
Q Consensus 79 ~~~~~~~-s~~la~~l~~~~~p~~lllD-----------------EP-t-~-LD~~~~~~~~~~ll~~l~~--~~-~~ii 134 (236)
.....-. -.++|.-+......=++++| || + . +|+.....+. ++++++.+ .| .|.+
T Consensus 228 ~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~-~ller~~~~~~GsIT~~ 306 (438)
T PRK07721 228 MRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILP-KLLERTGTNASGSITAF 306 (438)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHH-HHHHHhcCCCCCCeeeE
Confidence 0000000 02333333321111234444 65 4 4 9999999998 99999873 45 4555
Q ss_pred EEEecccccccchhhHhhhhHHHHHHHHhhCC
Q 026589 135 AVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (236)
Q Consensus 135 ~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~ 166 (236)
.+.++++|.+.+ .+++.+.....+++.++.
T Consensus 307 ~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~ 336 (438)
T PRK07721 307 YTVLVDGDDMNE--PIADTVRGILDGHFVLDR 336 (438)
T ss_pred EEEEEECCCCCc--hhhhhEEEecCEEEEEec
Confidence 556788999986 667777777777776654
No 434
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=3.6e-08 Score=85.68 Aligned_cols=47 Identities=15% Similarity=0.045 Sum_probs=33.9
Q ss_pred HhhhhcHH--HHHHHHHh-------cCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHH
Q 026589 79 EHLEDNLD--DWLAEELD-------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 79 ~~~~~~~s--~~la~~l~-------~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l 126 (236)
+.++.+++ +.++++++ ...+|+++++|||++ ||+..+..+. +.++++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~-~~l~~~ 238 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALL-DAIEGR 238 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHH-HHhhcC
Confidence 34455544 67777664 112899999999999 9999998877 666554
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.80 E-value=6.9e-08 Score=93.32 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCCC---CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026589 85 LDDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 85 ~s~~la~~l~~~~~p---~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
+++-||..|.. .. .++||||||. |-..-...++ +.+++|...|-||+++
T Consensus 829 QRvKLA~EL~k--~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnTViVI 881 (935)
T COG0178 829 QRVKLAKELSK--RSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNTVIVI 881 (935)
T ss_pred HHHHHHHHHhh--ccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 34889999886 54 7999999999 9999999999 9999999899999888
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.75 E-value=5.8e-08 Score=82.01 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=64.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCCC-CCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAE-NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~-~~G~i~i~~~d~~~~-~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
+++|+||||+||||+++.+++..-. .-|. .-|+.. .+++. + .++-.++-..+ .......+
T Consensus 32 ~~~itG~n~~gKs~~l~~i~~~~~la~~G~-----~vpa~~~~i~~~------~-----~i~~~~~~~d~--~~~~~StF 93 (218)
T cd03286 32 ILVLTGPNMGGKSTLLRTVCLAVIMAQMGM-----DVPAKSMRLSLV------D-----RIFTRIGARDD--IMKGESTF 93 (218)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHHcCC-----ccCccccEeccc------c-----EEEEecCcccc--cccCcchH
Confidence 6789999999999999999986321 1121 011111 11110 0 01111111111 00001122
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHhC-CCcEEEEE
Q 026589 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVY 137 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~ 137 (236)
...+ ..+++.+....+|+++++|||+. .++.....+...+++.+.+. +.+++++.
T Consensus 94 ~~e~-~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~T 150 (218)
T cd03286 94 MVEL-SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFST 150 (218)
T ss_pred HHHH-HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 2333 33444444323899999999998 99999888885668888765 77776664
No 437
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.70 E-value=1.3e-07 Score=80.25 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCCCCceEEEecc
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNL 38 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~-g~l~~~~G~i~i~~~ 38 (236)
+.++.|.|++|||||||+..++ +.++ .++++.+...
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~ 61 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITT 61 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEc
Confidence 3678899999999999999884 4333 4667777654
No 438
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.64 E-value=1.9e-07 Score=83.18 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=64.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
+.+++++|||||||||++..|++.+.+.+++|.+.+.|+.+.. .+.+ ...+.+..+++-.... ...+-.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~-------a~eq---l~~~a~~~~i~~~~~~-~~~dpa 182 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAA-------AIEQ---LQVWGERVGVPVIAQK-EGADPA 182 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchh-------hHHH---HHHHHHHcCceEEEeC-CCCCHH
Confidence 3689999999999999999999999998899999988863210 0111 2223333343210000 000000
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHH
Q 026589 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVD 124 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~--LD~~~~~~~~~~ll~ 124 (236)
...+ ..+..+... +-+++|+|.|+. .+.....++. ++.+
T Consensus 183 ~~v~-~~l~~~~~~--~~D~ViIDTaGr~~~~~~l~~eL~-~~~~ 223 (318)
T PRK10416 183 SVAF-DAIQAAKAR--GIDVLIIDTAGRLHNKTNLMEELK-KIKR 223 (318)
T ss_pred HHHH-HHHHHHHhC--CCCEEEEeCCCCCcCCHHHHHHHH-HHHH
Confidence 0011 344555556 789999999996 4554444443 4444
No 439
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.64 E-value=3.1e-07 Score=69.39 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~ 36 (236)
..+.|+||+||||||+++.+++.+......+.+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4688999999999999999999987765334433
No 440
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.63 E-value=3.5e-07 Score=82.30 Aligned_cols=103 Identities=20% Similarity=0.157 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~-~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
-.+.|.||+||||||+++.+.+.+.. .++.|.....++.. .++... .. +.....+..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~---~~~~~~---~~------i~q~evg~~---------- 180 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY---VHRNKR---SL------INQREVGLD---------- 180 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh---hccCcc---ce------EEccccCCC----------
Confidence 35789999999999999999997764 46777766433211 011000 00 000011110
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026589 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
...+...++.++-. +|+++++||+. |..+....+ + .+..|+.++.+
T Consensus 181 ~~~~~~~l~~~lr~--~pd~i~vgEir--d~~~~~~~l----~-aa~tGh~v~~T 226 (343)
T TIGR01420 181 TLSFANALRAALRE--DPDVILIGEMR--DLETVELAL----T-AAETGHLVFGT 226 (343)
T ss_pred CcCHHHHHHHhhcc--CCCEEEEeCCC--CHHHHHHHH----H-HHHcCCcEEEE
Confidence 01233567778878 99999999997 555553333 2 34568776544
No 441
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.62 E-value=3e-08 Score=87.07 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC--CCCceEEEeccCC
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP 40 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~--~~~G~i~i~~~d~ 40 (236)
++++||.|||||||||+++.|.+++. |.+|+|.+.+.|.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 48999999999999999999999987 7788998877664
No 442
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.61 E-value=9.7e-08 Score=79.23 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=38.4
Q ss_pred hhcHH--HHHHHHHhcCCCC-CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 82 EDNLD--DWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 82 ~~~~s--~~la~~l~~~~~p-~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
+.|.+ ..+...+....+. .++++|||-+ |.|..++.++ ++++.+.+.+..+++++
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~QviitT 296 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIITT 296 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEEE
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEeC
Confidence 44443 3555555553233 8999999998 9999999999 88887765466676554
No 443
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.59 E-value=1.8e-08 Score=83.98 Aligned_cols=122 Identities=25% Similarity=0.315 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-----CCcCCHHHhhhHHHHHHHhCCCCCCchhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYC 77 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~-----~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~ 77 (236)
+-++++|+.|||||||++.+.+...+......+.+..++.....+ .+.+|++....++.++..+..++++.....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 568999999999999999999998887777776666665444443 344566666667888999888888755432
Q ss_pred HHhhhhc----HHHHHHHHHhcCCC-CCEEEEeCCCcccHHhHHHHHHHHHHHH
Q 026589 78 MEHLEDN----LDDWLAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (236)
Q Consensus 78 ~~~~~~~----~s~~la~~l~~~~~-p~~lllDEPt~LD~~~~~~~~~~ll~~l 126 (236)
....... ...|+...... . +.+.+++-|.+.|.+.+......+.+.+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~ 137 (219)
T COG1100 86 DSTLRESSDELTEEWLEELREL--APDDVPILLVGNKIDLFDEQSSSEEILNQL 137 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHh--CCCCceEEEEecccccccchhHHHHHHhhh
Confidence 1111111 11444433333 4 3699999999999998877663444443
No 444
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.54 E-value=9e-08 Score=78.62 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~ 37 (236)
..++|+|||||||||++++++|+++++.|.+.+.+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 56899999999999999999999999999988854
No 445
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.53 E-value=7.1e-08 Score=81.82 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE-ecc
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI-VNL 38 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i-~~~ 38 (236)
.++++|.||||||||||++.|++.+++.+|.+.+ ...
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~ 70 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPM 70 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEec
Confidence 4789999999999999999999999999998655 443
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.51 E-value=5.2e-07 Score=77.69 Aligned_cols=64 Identities=11% Similarity=0.188 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHH-HHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhh
Q 026589 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP-VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 164 (236)
Q Consensus 87 ~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~-~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~ 164 (236)
..+|+++.. ++++.+| ||. +|..+... .+ +..+...+.+.+++ +|.+.....|
T Consensus 146 ~~~Ar~~~~--~gsIt~l--~T~~~d~~~~~~~~i---~~~~~~~~~~~ivl----s~~la~~~~~-------------- 200 (249)
T cd01128 146 FGAARNIEE--GGSLTII--ATALVDTGSRMDDVI---FEEFKGTGNMELVL----DRRLAERRIF-------------- 200 (249)
T ss_pred HHHhcCCCC--CCceEEe--eeheecCCCcccchH---HHHHhcCCCcEEEE----chHHhhCCCC--------------
Confidence 778888777 9999999 998 99766544 33 45555444555555 3666544443
Q ss_pred CCCeeeecccccc
Q 026589 165 ELPHVNILSKMDL 177 (236)
Q Consensus 165 ~~p~i~vlsk~dl 177 (236)
|.|+|+.+.-.
T Consensus 201 --paI~vl~s~sr 211 (249)
T cd01128 201 --PAIDILKSGTR 211 (249)
T ss_pred --CeEEEcCCCCc
Confidence 88888876554
No 447
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.49 E-value=4.1e-07 Score=82.72 Aligned_cols=128 Identities=20% Similarity=0.171 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--------CCCCCC--------------CCcC---------
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY--------------PVAM--------- 51 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~--------~~~~~~--------------~~~~--------- 51 (236)
-+.+++|.||-||||-+++++|-++|.-|.-.- +.+-. .+--.| +|.+
T Consensus 101 ~vlglvgtngigkstAlkilagk~kpnlg~~~~-pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~k~ 179 (592)
T KOG0063|consen 101 QVLGLVGTNGIGKSTALKILAGKQKPNLGRYDN-PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAVKG 179 (592)
T ss_pred hhccccccCcccHHHHHHHHhCCCCCCCCCCCC-CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHHHH
Confidence 457899999999999999999999998775311 10000 000011 1111
Q ss_pred CHHHhhh-------HHHHHHHhCCCCCCchhhhHHhhhhc--HHHHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHH
Q 026589 52 DIRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (236)
Q Consensus 52 ~i~~~i~-------~~~~l~~~~l~~~~~~~~~~~~~~~~--~s~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ 121 (236)
++...+. .+++++.+.|+.-..+. .+.++++ ++.++|.+... +.++.+||||.+ ||...+.... .
T Consensus 180 ~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re--~~~lsggelqrfaia~~~vq--~advyMFDEpSsYLDVKQRLkaA-~ 254 (592)
T KOG0063|consen 180 TVGSLLDRKDERDNKEEVCDQLDLNNLLDRE--VEQLSGGELQRFAIAMVCVQ--KADVYMFDEPSSYLDVKQRLKAA-I 254 (592)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHhhHHHhh--hhhcccchhhhhhhhhhhhh--hcceeEecCCcccchHHHhhhHH-H
Confidence 1111111 44555555555322111 1233332 23677777777 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCcEEEE
Q 026589 122 FVDHLKSRNFNVCAV 136 (236)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (236)
.++.+..-+.-+++|
T Consensus 255 ~IRsl~~p~~YiIVV 269 (592)
T KOG0063|consen 255 TIRSLINPDRYIIVV 269 (592)
T ss_pred HHHHhhCCCCeEEEE
Confidence 899987654445444
No 448
>PRK14974 cell division protein FtsY; Provisional
Probab=98.48 E-value=4.6e-06 Score=74.79 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
++++++||||+||||++..++..+...+.+|.+.+-|+.+. ...+. +..+.+.+|+.-..... .. ...
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~--------~a~eq--L~~~a~~lgv~v~~~~~-g~-dp~ 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA--------GAIEQ--LEEHAERLGVKVIKHKY-GA-DPA 208 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH--------HHHHH--HHHHHHHcCCceecccC-CC-CHH
Confidence 68999999999999999999998887767888776553210 01111 33445555543211000 00 000
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcc--cHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHH
Q 026589 83 DNLDDWLAEELDNYLDDDYLVFDCPGQI--ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~L--D~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~ 160 (236)
.-...++..+-.. +-+++|+|+|+.+ |.....++. ++.+.. +...++ .++|+..-.+...-+ .
T Consensus 209 ~v~~~ai~~~~~~--~~DvVLIDTaGr~~~~~~lm~eL~-~i~~~~-~pd~~i---LVl~a~~g~d~~~~a--------~ 273 (336)
T PRK14974 209 AVAYDAIEHAKAR--GIDVVLIDTAGRMHTDANLMDELK-KIVRVT-KPDLVI---FVGDALAGNDAVEQA--------R 273 (336)
T ss_pred HHHHHHHHHHHhC--CCCEEEEECCCccCCcHHHHHHHH-HHHHhh-CCceEE---EeeccccchhHHHHH--------H
Confidence 0011222233334 6789999999973 554444443 444433 222222 234443222221111 1
Q ss_pred HH-hhCCCeeeeccccccccchh
Q 026589 161 MV-QLELPHVNILSKMDLVTNKK 182 (236)
Q Consensus 161 ~i-~~~~p~i~vlsk~dll~~~~ 182 (236)
.. ..-...-.|+||.|--.+.+
T Consensus 274 ~f~~~~~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 274 EFNEAVGIDGVILTKVDADAKGG 296 (336)
T ss_pred HHHhcCCCCEEEEeeecCCCCcc
Confidence 11 01124557899999976653
No 449
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.47 E-value=3.3e-06 Score=71.94 Aligned_cols=119 Identities=19% Similarity=0.252 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh------------CCCCCCceEEEec-cCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYR------------HCETVRRTMHIVN-LDPAAENFDYPVAMDIRELISLEDVMEELGLG 69 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g------------~l~~~~G~i~i~~-~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~ 69 (236)
+...|+||+|+|||||+-.++= ...+..|+|.+.+ .++.. .+.+. +..+...+++.
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~---------~i~~R--l~~i~~~~~~~ 70 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPRE---------EIHRR--LEAILQHLEPD 70 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHH---------HHHHH--HHHHHhhcCCc
Confidence 5678999999999999988862 2333456665544 33321 11111 23333333322
Q ss_pred CCCchhh-------hH-------HhhhhcHHHHHHHHH-hcCCCCCEEEEeCCCc-------ccHHhHHHHHHHHHHHHH
Q 026589 70 PNGGLIY-------CM-------EHLEDNLDDWLAEEL-DNYLDDDYLVFDCPGQ-------IELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 70 ~~~~~~~-------~~-------~~~~~~~s~~la~~l-~~~~~p~~lllDEPt~-------LD~~~~~~~~~~ll~~l~ 127 (236)
+...... .. ......+ ..+...+ .. +|+++++| |.+ .|......++ +.+++++
T Consensus 71 ~~~~rl~~~~g~~~~l~~~~~~~~~~~~~~-~~l~~~~~~~--~~~lvviD-pl~~~~~~~~~d~~~~~~~~-~~L~~~a 145 (239)
T cd01125 71 DAGDRLFIDSGRIQPISIAREGRIIVVPEF-ERIIEQLLIR--RIDLVVID-PLVSFHGVSENDNGAMDAVI-KALRRIA 145 (239)
T ss_pred CcccceEEeccCCCceecccCCcccccHHH-HHHHHHHHhc--CCCEEEEC-ChHHhCCCCcCCHHHHHHHH-HHHHHHH
Confidence 1110000 00 0011122 3333333 35 89999999 653 5787787888 6677776
Q ss_pred h-CCCcEEEEE
Q 026589 128 S-RNFNVCAVY 137 (236)
Q Consensus 128 ~-~~~~ii~v~ 137 (236)
+ .|.+++++|
T Consensus 146 ~~~g~avl~v~ 156 (239)
T cd01125 146 AQTGAAILLVH 156 (239)
T ss_pred HHhCCEEEEEe
Confidence 5 588998886
No 450
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.46 E-value=2e-07 Score=69.94 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~ 41 (236)
.+++|+||+|||||||++++. +|++.++|.|..
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~ 48 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI------KRKHRLVGDDNV 48 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHH
Confidence 578999999999999999986 789999998763
No 451
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.42 E-value=1.5e-07 Score=79.50 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccC
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLD 39 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~--~~G~i~i~~~d 39 (236)
++||.||||||||||++.|.+.+.+ .++++.+...|
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D 38 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD 38 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecC
Confidence 5899999999999999999999875 56777775443
No 452
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.41 E-value=2.4e-07 Score=85.85 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEEEeccCCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPA 41 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G-~i~i~~~d~~ 41 (236)
-+++|+||+|||||||++ +|+..|++| +|.++|.+..
T Consensus 33 Eiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred CEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 578999999999999999 788888888 7999998764
No 453
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.40 E-value=5.1e-06 Score=67.04 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
|++++.||+||||||++..++..+...+.+|.+.+.|+
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 57899999999999999999988776666788887775
No 454
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.40 E-value=8.3e-07 Score=81.81 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
-.++|+|+||+|||||++.+++..+++.|.|.+.|... ..+++. +++.+..-++...--.....+...
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg----------~ev~e~--~~~~l~~~gl~~tvvv~~tsd~s~ 224 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG----------REVKDF--IRKELGEEGMRKSVVVVATSDESH 224 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc----------ccHHHH--HHHHhhhcccceeEEEEECCCCCH
Confidence 35799999999999999999999999999888777553 134443 233343333332100000011111
Q ss_pred h-cHH-----HHHHHHHhcCCCCCEEEEeCCCc-ccHH
Q 026589 83 D-NLD-----DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (236)
Q Consensus 83 ~-~~s-----~~la~~l~~~~~p~~lllDEPt~-LD~~ 113 (236)
. ..+ ..+|..+....++-++++|+||. .|..
T Consensus 225 ~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~ 262 (432)
T PRK06793 225 LMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR 262 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence 1 111 34455554434788999999998 8886
No 455
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.39 E-value=3.3e-06 Score=64.38 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
-.+.|.||+|+||||+++.+++.+......+.+.+..... ............
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~------------~~~~~~~~~~~~---------------- 71 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL------------EGLVVAELFGHF---------------- 71 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh------------hhhHHHHHhhhh----------------
Confidence 3578999999999999999999876444555444321100 000000000000
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHH
Q 026589 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK 127 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~ 127 (236)
............ ++.++++||...+.......+. ..+....
T Consensus 72 -~~~~~~~~~~~~--~~~~lilDe~~~~~~~~~~~~~-~~i~~~~ 112 (151)
T cd00009 72 -LVRLLFELAEKA--KPGVLFIDEIDSLSRGAQNALL-RVLETLN 112 (151)
T ss_pred -hHhHHHHhhccC--CCeEEEEeChhhhhHHHHHHHH-HHHHhcC
Confidence 000222333344 7899999999887565555666 6666653
No 456
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.38 E-value=8.6e-06 Score=70.05 Aligned_cols=97 Identities=24% Similarity=0.307 Sum_probs=56.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~ 83 (236)
.++|.|||||||||+++.+.+.+.+. .+.+.... ....+..+. ...+...+|+...+... .....
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~--------~~~~~~~~~--l~~i~~~lG~~~~~~~~---~~~~~ 109 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLV--------NTRVDAEDL--LRMVAADFGLETEGRDK---AALLR 109 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeee--------CCCCCHHHH--HHHHHHHcCCCCCCCCH---HHHHH
Confidence 57899999999999999999987753 33322211 112234443 45566777876543211 11222
Q ss_pred cHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHH
Q 026589 84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHV 116 (236)
Q Consensus 84 ~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~ 116 (236)
.+..++...... .++.++++||.-.++.....
T Consensus 110 ~l~~~l~~~~~~-~~~~vliiDe~~~l~~~~~~ 141 (269)
T TIGR03015 110 ELEDFLIEQFAA-GKRALLVVDEAQNLTPELLE 141 (269)
T ss_pred HHHHHHHHHHhC-CCCeEEEEECcccCCHHHHH
Confidence 232233222222 16679999996668876543
No 457
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.37 E-value=7.7e-06 Score=80.03 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G--~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
.+++++||||+||||++..|++.+....| +|.+...|..+ + ...+. ...+.+.+++.-....
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R--i------gA~eQ--L~~~a~~~gvpv~~~~------ 249 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR--I------GALEQ--LRIYGRILGVPVHAVK------ 249 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc--h------HHHHH--HHHHHHhCCCCccccC------
Confidence 47899999999999999999999866655 67777666321 0 11121 3444455555332100
Q ss_pred hhhcHHHHHHHHHhcCCCCCEEEEeCCCc--ccHH
Q 026589 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELF 113 (236)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lllDEPt~--LD~~ 113 (236)
.- ..+..++....+-+++|+|.|+- -|..
T Consensus 250 ---~~-~~l~~al~~~~~~D~VLIDTAGRs~~d~~ 280 (767)
T PRK14723 250 ---DA-ADLRFALAALGDKHLVLIDTVGMSQRDRN 280 (767)
T ss_pred ---CH-HHHHHHHHHhcCCCEEEEeCCCCCccCHH
Confidence 11 11222222222668999999994 5544
No 458
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.37 E-value=4.3e-07 Score=90.98 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=64.3
Q ss_pred HHHHHhCCCCC-CchhhhHHhhhhcHH--HHHHHHHhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEE
Q 026589 61 DVMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (236)
Q Consensus 61 ~~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p--~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (236)
+.++.+||+.. ... ....++++.+ +.||++++. +| +++||||||+ ||+.....++ ++++++++.|.+|+
T Consensus 471 ~~L~~vGL~~l~l~r--~~~~LSgGE~QRv~LA~aL~~--~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~~G~TVI 545 (943)
T PRK00349 471 KFLVDVGLDYLTLSR--SAGTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRDLGNTLI 545 (943)
T ss_pred HHhhccccCCCCCCC--chhhCCHHHHHHHHHHHHHhh--CCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 36777888632 122 2345666654 999999998 76 9999999999 9999999999 99999987899998
Q ss_pred EEEecccccccchhhHhhhhHHH
Q 026589 135 AVYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 135 ~v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
+|. |.+.... .++.++..
T Consensus 546 vVe----H~~~~i~-~aD~vi~L 563 (943)
T PRK00349 546 VVE----HDEDTIR-AADYIVDI 563 (943)
T ss_pred EEe----CCHHHHH-hCCEEEEe
Confidence 884 6554432 35555444
No 459
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.37 E-value=5e-06 Score=75.44 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G--~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
.+++++||||+||||++..|++.+....| +|.+...|..+ ....+. +..+.+.+|+.-... .
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R--------~ga~Eq--L~~~a~~~gv~~~~~------~ 201 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR--------IGGHEQ--LRIFGKILGVPVHAV------K 201 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc--------ccHHHH--HHHHHHHcCCceEec------C
Confidence 57899999999999999999987543333 56666544311 112222 333344455432110 0
Q ss_pred hhhcHHHHHHHHHhcCCCCCEEEEeCCCc--ccHHh
Q 026589 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFT 114 (236)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lllDEPt~--LD~~~ 114 (236)
-...+ ..++..+.+.+++++|+|+- .|...
T Consensus 202 ~~~~l----~~~l~~l~~~DlVLIDTaG~~~~d~~l 233 (374)
T PRK14722 202 DGGDL----QLALAELRNKHMVLIDTIGMSQRDRTV 233 (374)
T ss_pred CcccH----HHHHHHhcCCCEEEEcCCCCCcccHHH
Confidence 01112 22233222789999999994 66653
No 460
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.37 E-value=3.7e-07 Score=91.30 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=63.2
Q ss_pred HHHHhCCCCC-CchhhhHHhhhhcHH--HHHHHHHhcCCCC--CEEEEeCCCc-ccHHhHHHHHHHHHHHHHhCCCcEEE
Q 026589 62 VMEELGLGPN-GGLIYCMEHLEDNLD--DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (236)
Q Consensus 62 ~l~~~~l~~~-~~~~~~~~~~~~~~s--~~la~~l~~~~~p--~~lllDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (236)
.+..+||+.. ..+ ....++++.+ +.||++++. +| +++||||||+ ||+.....++ +++++++++|.+|++
T Consensus 470 ~L~~vgL~~l~l~r--~~~tLSGGE~QRv~LA~aL~~--~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~G~TVIv 544 (924)
T TIGR00630 470 FLIDVGLDYLTLSR--AAGTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDLGNTVIV 544 (924)
T ss_pred hHhhccccccccCC--CcCcCCHHHHHHHHHHHHHhh--CCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 4566777642 111 1345666644 999999998 75 8999999999 9999999999 999999878989988
Q ss_pred EEecccccccchhhHhhhhHHH
Q 026589 136 VYLLDSQFITDVTKFISGCMAS 157 (236)
Q Consensus 136 v~l~d~~~~~d~~~~~~~~l~~ 157 (236)
|. |..... ..++.++..
T Consensus 545 Ve----Hd~~~i-~~aD~vi~L 561 (924)
T TIGR00630 545 VE----HDEETI-RAADYVIDI 561 (924)
T ss_pred EE----CCHHHH-hhCCEEEEe
Confidence 74 655433 356655555
No 461
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.37 E-value=6.2e-06 Score=81.97 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~ 37 (236)
..+|+||+|||||||++.+.+.....++++.+.+
T Consensus 448 ~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D 481 (800)
T PRK13898 448 HTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFD 481 (800)
T ss_pred EEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeC
Confidence 3789999999999999999998877777777764
No 462
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.35 E-value=2.9e-06 Score=67.64 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=17.7
Q ss_pred EEcCCCCcHHHHHHHHHhC
Q 026589 7 VIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 7 iiGpnGsGKSTLl~~l~g~ 25 (236)
|+|++|||||||++.+.|.
T Consensus 1 iiG~~~~GKStll~~l~~~ 19 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA 19 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC
Confidence 5899999999999999985
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.34 E-value=3.7e-07 Score=76.12 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (236)
+.+++|+||||||||||++.|++++++ +.+.+...|
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D 41 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQD 41 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccc
Confidence 368999999999999999999999876 445444444
No 464
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.34 E-value=4.2e-06 Score=67.06 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
++.|+|++|||||||++.+.+..+
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~ 25 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQH 25 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhccc
Confidence 467999999999999999887643
No 465
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.33 E-value=4.3e-07 Score=75.01 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (236)
+++|.||+|||||||++.|++++ .+|.+.+.+.|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D 34 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD 34 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence 47999999999999999999988 45677777665
No 466
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.33 E-value=6.7e-07 Score=73.36 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc
Q 026589 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~ 38 (236)
|+-+++|+|||||||||+++.|++...+ .+.+.+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~ 35 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHR 35 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCE
Confidence 6778999999999999999999998765 4555443
No 467
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.32 E-value=1.5e-05 Score=69.51 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
.+++++||+|+||||.+..++..+...+.+|.+...|+.+ ....-....+.+..++.-..... .. ...
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r----------~~a~~ql~~~~~~~~i~~~~~~~-~~-dp~ 140 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR----------AAAIEQLEEWAKRLGVDVIKQKE-GA-DPA 140 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC----------HHHHHHHHHHHHhCCeEEEeCCC-CC-CHH
Confidence 5788999999999999999999888777789998877521 11111244455555543110000 00 000
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHH
Q 026589 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHL 126 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~--LD~~~~~~~~~~ll~~l 126 (236)
......+..+... +-+++|+|.|+. -|.....++. ++.+..
T Consensus 141 ~~~~~~l~~~~~~--~~D~ViIDT~G~~~~d~~~~~el~-~~~~~~ 183 (272)
T TIGR00064 141 AVAFDAIQKAKAR--NIDVVLIDTAGRLQNKVNLMDELK-KIKRVI 183 (272)
T ss_pred HHHHHHHHHHHHC--CCCEEEEeCCCCCcchHHHHHHHH-HHHHHH
Confidence 1000223333345 679999999996 4555444444 444433
No 468
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.28 E-value=5.3e-06 Score=68.95 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=79.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
+.+++++||+|+||||.+--|+..+...+.+|.+...|..+ .-..+. +..+.+.+|+.-...... +..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R--------~ga~eQ--L~~~a~~l~vp~~~~~~~--~~~ 68 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR--------IGAVEQ--LKTYAEILGVPFYVARTE--SDP 68 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS--------THHHHH--HHHHHHHHTEEEEESSTT--SCH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC--------ccHHHH--HHHHHHHhccccchhhcc--hhh
Confidence 36789999999999999999988877667778877766422 011122 444555666542110000 000
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHH
Q 026589 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~ 159 (236)
..-.+.++...-.. +-+++++|.|+- -|.....++. ++++.. ....+++| +++..-. .. + -....
T Consensus 69 ~~~~~~~l~~~~~~--~~D~vlIDT~Gr~~~d~~~~~el~-~~~~~~--~~~~~~LV--lsa~~~~--~~-~---~~~~~ 135 (196)
T PF00448_consen 69 AEIAREALEKFRKK--GYDLVLIDTAGRSPRDEELLEELK-KLLEAL--NPDEVHLV--LSATMGQ--ED-L---EQALA 135 (196)
T ss_dssp HHHHHHHHHHHHHT--TSSEEEEEE-SSSSTHHHHHHHHH-HHHHHH--SSSEEEEE--EEGGGGG--HH-H---HHHHH
T ss_pred HHHHHHHHHHHhhc--CCCEEEEecCCcchhhHHHHHHHH-HHhhhc--CCccceEE--EecccCh--HH-H---HHHHH
Confidence 00011222222223 568999999994 6666665555 666665 23334444 2221111 11 0 01111
Q ss_pred HHHhhCCCeeeeccccccccchh
Q 026589 160 AMVQLELPHVNILSKMDLVTNKK 182 (236)
Q Consensus 160 ~~i~~~~p~i~vlsk~dll~~~~ 182 (236)
-.-.++ +.-.|++|.|-..+.+
T Consensus 136 ~~~~~~-~~~lIlTKlDet~~~G 157 (196)
T PF00448_consen 136 FYEAFG-IDGLILTKLDETARLG 157 (196)
T ss_dssp HHHHSS-TCEEEEESTTSSSTTH
T ss_pred Hhhccc-CceEEEEeecCCCCcc
Confidence 111122 3457899999987654
No 469
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.28 E-value=2.5e-06 Score=85.18 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC-CCCCceEEEeccCCCC-CCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l-~~~~G~i~i~~~d~~~-~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
-++.|.|||++||||++|.++-.. -+.-|.. -|+. ..+++ ++.++-++|-..+... ....
T Consensus 608 ~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~-----VPa~~a~i~~-----------~d~I~triga~d~i~~--g~ST 669 (854)
T PRK05399 608 RLLLITGPNMAGKSTYMRQVALIVLLAQIGSF-----VPAESARIGI-----------VDRIFTRIGASDDLAS--GRST 669 (854)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHHHHhcCCc-----eeccceEecc-----------cCeeeeccCccccccc--Cccc
Confidence 367899999999999999986531 1222221 0111 11111 1223333333322110 0112
Q ss_pred hhhcHHHHHHHHHhcCCCCCEEEEeCC---Cc-ccHHhHHHHHHHHHHHHHhC-CCcEEEE
Q 026589 81 LEDNLDDWLAEELDNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (236)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lllDEP---t~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (236)
+...+ ..++.++....++.++|+||| |+ .|..+ ..+ .+++.+.+. +.+++++
T Consensus 670 F~~E~-~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~-aile~l~~~~~~~~l~a 726 (854)
T PRK05399 670 FMVEM-TETANILNNATERSLVLLDEIGRGTSTYDGLS--IAW-AVAEYLHDKIGAKTLFA 726 (854)
T ss_pred HHHHH-HHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHH-HHHHHHHhcCCceEEEE
Confidence 32333 555555554337899999999 66 77433 234 788888765 4555544
No 470
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.27 E-value=1.1e-05 Score=66.72 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~ 36 (236)
+-++|+|++|+|||||+++|.|...+..|.+...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~ 35 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG 35 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccC
Confidence 4579999999999999999999888877777655
No 471
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.25 E-value=1.2e-05 Score=68.87 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC--CCCCCceEE
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMH 34 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~--l~~~~G~i~ 34 (236)
.++|+|++||||||++++++|. .+...|.+.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t 60 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCccc
Confidence 4789999999999999999998 555566655
No 472
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=2.7e-05 Score=71.09 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
.+++++|||||||||++..|++.+...+.+|.+...|+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 47899999999999999999998765545777776664
No 473
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.24 E-value=3.4e-06 Score=78.87 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G--~i~i~~~d~ 40 (236)
.+++++||||+||||++..|++.+....| +|.+...|+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 57999999999999999999999877665 576665554
No 474
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.23 E-value=8.2e-06 Score=64.79 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 026589 5 QLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 5 ~~iiGpnGsGKSTLl~~l~g~ 25 (236)
++|+|++|||||||++.+.|.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999863
No 475
>PRK09183 transposase/IS protein; Provisional
Probab=98.22 E-value=5.9e-06 Score=71.53 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
..++|+||+|+|||||+.+++......+.+|.+.+ . .+++..+.-... .
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~---------------~------~~l~~~l~~a~~----------~ 151 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT---------------A------ADLLLQLSTAQR----------Q 151 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe---------------H------HHHHHHHHHHHH----------C
Confidence 45789999999999999999765444444665442 1 112211100000 0
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026589 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
++....+. .... .++++++||.+. .+......+. +++....+.+ +++++
T Consensus 152 ~~~~~~~~-~~~~--~~dlLiiDdlg~~~~~~~~~~~lf-~li~~r~~~~-s~iiT 202 (259)
T PRK09183 152 GRYKTTLQ-RGVM--APRLLIIDEIGYLPFSQEEANLFF-QVIAKRYEKG-SMILT 202 (259)
T ss_pred CcHHHHHH-HHhc--CCCEEEEcccccCCCChHHHHHHH-HHHHHHHhcC-cEEEe
Confidence 11101111 2234 789999999985 6666655666 7877765544 44444
No 476
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.22 E-value=5.9e-06 Score=82.57 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=48.2
Q ss_pred HHHHHHhcCCCCCEEEEeCCCc-c-cHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhh--HhhhhHHHHHHHHh
Q 026589 88 WLAEELDNYLDDDYLVFDCPGQ-I-ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK--FISGCMASLSAMVQ 163 (236)
Q Consensus 88 ~la~~l~~~~~p~~lllDEPt~-L-D~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~--~~~~~l~~~~~~i~ 163 (236)
++++++.. +|+++++|||.. + |+.....+. +.++.+.+.|..+++++ |...+... ....++-.+...+.
T Consensus 679 ri~~~l~~--~p~illlDE~w~~L~d~~~~~~i~-~~lk~~RK~g~~vil~T----Qs~~d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 679 RIERALKG--QPAVIILDEAWLMLGHPAFRAKIR-EWLKVLRKANCLVLMAT----QSLSDAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHHhcC--CCCEEEEeCchhhcCCHHHHHHHH-HHHHHHHhcCCEEEEEe----CCHHHHhhCchHHHHHHcCCccee
Confidence 46677767 999999999998 8 677777777 88888877777776664 66554433 33444444444444
Q ss_pred h
Q 026589 164 L 164 (236)
Q Consensus 164 ~ 164 (236)
+
T Consensus 752 L 752 (852)
T PRK13891 752 L 752 (852)
T ss_pred c
Confidence 4
No 477
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.22 E-value=1.8e-05 Score=73.20 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-C-CCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-T-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-~-~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~ 80 (236)
.+++++||+|+||||++..|+..+. . .+.+|.+...|+.+. ...+. +..+.+.+++.-...
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~--------~a~eq--L~~~a~~~~vp~~~~------- 284 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI--------GAVEQ--LKTYAKIMGIPVEVV------- 284 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH--------HHHHH--HHHHHHHhCCceEcc-------
Confidence 4789999999999999999998775 2 345788887665210 00111 233334445432110
Q ss_pred hhhcHHHHHHHHHhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHH
Q 026589 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVD 124 (236)
Q Consensus 81 ~~~~~s~~la~~l~~~~~p~~lllDEPt~--LD~~~~~~~~~~ll~ 124 (236)
... ..+..++....+.+++|+|.|+. .|......+. ++++
T Consensus 285 --~~~-~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~-~ll~ 326 (424)
T PRK05703 285 --YDP-KELAKALEQLRDCDVILIDTAGRSQRDKRLIEELK-ALIE 326 (424)
T ss_pred --CCH-HhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHH-HHHh
Confidence 001 12222333222789999999985 7776665555 6555
No 478
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.22 E-value=1.4e-06 Score=72.55 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
+.+++|.|++|||||||++.|++.+. .+.+.+.+.|.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~ 42 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDS 42 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCc
Confidence 47899999999999999999999883 45676666654
No 479
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.21 E-value=2e-05 Score=73.31 Aligned_cols=98 Identities=15% Similarity=0.222 Sum_probs=57.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCC--CceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhh
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~--~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~ 81 (236)
.+.|.||+|+|||+|+++++..+... +.+|.+.+ ..+. ..++...+.-+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~---------------~~~f--~~~~~~~~~~~------------ 182 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT---------------SEKF--LNDLVDSMKEG------------ 182 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE---------------HHHH--HHHHHHHHhcc------------
Confidence 46899999999999999999864321 12333331 1111 12222221100
Q ss_pred hhcHHHHHHHHHhcCCCCCEEEEeCCCc-ccHH-hHHHHHHHHHHHHHhCCCcEEEE
Q 026589 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF-THVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 82 ~~~~s~~la~~l~~~~~p~~lllDEPt~-LD~~-~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
.. ..+...+.. ++++|++|||.. ++.. ++..+. .++..+.+.|+.++++
T Consensus 183 --~~-~~f~~~~~~--~~dvLlIDDi~~l~~~~~~q~elf-~~~n~l~~~~k~iIit 233 (440)
T PRK14088 183 --KL-NEFREKYRK--KVDVLLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVIC 233 (440)
T ss_pred --cH-HHHHHHHHh--cCCEEEEechhhhcCcHHHHHHHH-HHHHHHHHcCCeEEEE
Confidence 01 122222324 799999999998 6654 455666 8888887777766555
No 480
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.20 E-value=8.3e-06 Score=62.70 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHHHhhCCCeeeecccccc
Q 026589 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (236)
Q Consensus 98 ~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~~p~i~vlsk~dl 177 (236)
..++.+.|.|+.-+..............+.+. ... +++++|........... ..........|.+-|+||.|+
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~-~d~-il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLER-ADL-ILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHh-CCE-EEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence 45799999999744333222111233333332 222 22234444332222211 233334568899999999999
Q ss_pred ccch
Q 026589 178 VTNK 181 (236)
Q Consensus 178 l~~~ 181 (236)
....
T Consensus 117 ~~~~ 120 (163)
T cd00880 117 LPEE 120 (163)
T ss_pred CChh
Confidence 8654
No 481
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.19 E-value=6.4e-06 Score=72.16 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-C-ceEEEeccCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-R-RTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-~-G~i~i~~~d~ 40 (236)
.+++++||+|+||||++..|+..+... + .+|.+...|+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 478999999999999999999988655 2 4788887664
No 482
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.19 E-value=4.2e-06 Score=66.99 Aligned_cols=121 Identities=19% Similarity=0.294 Sum_probs=64.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-----CCCCCCCCCcCCHHHhhh-HHHHHHHhCC-----CC
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAENFDYPVAMDIRELIS-LEDVMEELGL-----GP 70 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~-----~~~~~~~~~~~~i~~~i~-~~~~l~~~~l-----~~ 70 (236)
..-++|.||+|+||||+++-+...++... ..+.|.-. .-...+| +|.+.-+ -+.++...+. |.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF----~Ivdl~tg~~~~la~~~~~~~rvGk 78 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGF----KIVDLATGEEGILARVGFSRPRVGK 78 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeee----EEEEccCCceEEEEEcCCCCcccce
Confidence 34578999999999999999998876542 22222110 0011222 1111000 0001111111 11
Q ss_pred CCchhhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026589 71 NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 71 ~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
.+-.. +.+..-..-+|.+|+. .+|++|.||.+-++..++ .+. +.+.+..+.++.++++
T Consensus 79 Y~V~v---~~le~i~~~al~rA~~---~aDvIIIDEIGpMElks~-~f~-~~ve~vl~~~kpliat 136 (179)
T COG1618 79 YGVNV---EGLEEIAIPALRRALE---EADVIIIDEIGPMELKSK-KFR-EAVEEVLKSGKPLIAT 136 (179)
T ss_pred EEeeH---HHHHHHhHHHHHHHhh---cCCEEEEecccchhhccH-HHH-HHHHHHhcCCCcEEEE
Confidence 11111 1111111145566654 579999999999999886 444 6677766667766655
No 483
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.19 E-value=3.5e-05 Score=60.00 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
..++++|++|||||||++.+.|.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 484
>PLN02796 D-glycerate 3-kinase
Probab=98.18 E-value=1.5e-06 Score=77.81 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCC
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP 40 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~---~G~i~i~~~d~ 40 (236)
+++++|.|++|||||||++.|.+++++. .|.|.+++...
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 3689999999999999999999999875 46677777654
No 485
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.18 E-value=1.5e-06 Score=75.83 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~ 36 (236)
+++|+|+||||||||++.|++++++.++.+...
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~ 33 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICL 33 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEEC
Confidence 479999999999999999999999887765543
No 486
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.17 E-value=2.7e-06 Score=80.78 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
+++++|.||||||||||++.|++.+ +..|.|.++|...
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~ 102 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYND 102 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceec
Confidence 3789999999999999999999997 5678888888653
No 487
>PRK00089 era GTPase Era; Reviewed
Probab=98.17 E-value=1.5e-05 Score=69.70 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~ 25 (236)
-.++|+|++|||||||++.+.|-
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999873
No 488
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.17 E-value=8.2e-06 Score=69.67 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-ccHHhHHHHHHHHHHHHHh-CCCcEEEE
Q 026589 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (236)
Q Consensus 87 ~~la~~l~~~~~p~~lllDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (236)
..++..+-...+..++|+||++. -++.....+...+++.|.+ .+..++++
T Consensus 111 ~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~ 162 (235)
T PF00488_consen 111 KRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIA 162 (235)
T ss_dssp HHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEE
T ss_pred HHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEE
Confidence 34444443222667999999997 8888777777688999987 46555444
No 489
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.17 E-value=1.1e-05 Score=74.89 Aligned_cols=147 Identities=12% Similarity=0.140 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC------CCcCC-HHHh------hh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY------PVAMD-IREL------IS 58 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~~------~~~~~-i~~~------i~ 58 (236)
-.++|+|+||+|||||+++|++..+++.|.+...|..... +.+.. ..+.. +... ++
T Consensus 164 q~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~a~t 243 (440)
T TIGR01026 164 QRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATA 243 (440)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999999999988877777654321 00000 00111 1111 11
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhcHHHHHHHHHhcCCCCCEEEEeC-CCc--ccHHhHHHHHHHHHHHHHhCC---Cc
Q 026589 59 LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDC-PGQ--IELFTHVPVLRNFVDHLKSRN---FN 132 (236)
Q Consensus 59 ~~~~l~~~~l~~~~~~~~~~~~~~~~~s~~la~~l~~~~~p~~lllDE-Pt~--LD~~~~~~~~~~ll~~l~~~~---~~ 132 (236)
+.|.+...| .+-- .+...+ -..|+|+-.. =+.+.| |+. .++.....+. +++.+....+ .|
T Consensus 244 ~AE~frd~G--~~Vl------l~~Dsl-Tr~A~A~REi----sl~~ge~P~~~Gypp~~~~~l~-~l~ERag~~~~GSIT 309 (440)
T TIGR01026 244 IAEYFRDQG--KDVL------LLMDSV-TRFAMAQREI----GLAAGEPPATKGYTPSVFSTLP-RLLERAGASGKGSIT 309 (440)
T ss_pred HHHHHHHCC--CCEE------EEEeCh-HHHHHHHHHH----HHhcCCCCcccccChhHHHHHH-HHHHHhccCCCCeee
Confidence 222222222 1110 011111 1111111100 012335 453 9999988888 8888876432 35
Q ss_pred EEEEEecccccccchhhHhhhhHHHHHHHHhhC
Q 026589 133 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (236)
Q Consensus 133 ii~v~l~d~~~~~d~~~~~~~~l~~~~~~i~~~ 165 (236)
.+.+-++++|.+.|| +++.+.....+++.++
T Consensus 310 ~i~tVl~~~~d~~dp--i~d~~~~i~dG~ivLs 340 (440)
T TIGR01026 310 AFYTVLVEGDDMNEP--IADSVRGILDGHIVLS 340 (440)
T ss_pred EEEEEEccCcCCCcc--hhhhhccccceEEEEe
Confidence 555567788888776 3455556666666554
No 490
>PRK04296 thymidine kinase; Provisional
Probab=98.16 E-value=1.1e-05 Score=66.62 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec--cCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhH
Q 026589 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN--LDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (236)
Q Consensus 1 ~~~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~--~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~ 78 (236)
|+.++.+.||.||||||++..+..-+.....++.+.. .+... .. ..+.+++|+.-..-.....
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~---~~------------~~i~~~lg~~~~~~~~~~~ 65 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRY---GE------------GKVVSRIGLSREAIPVSSD 65 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccc---cC------------CcEecCCCCcccceEeCCh
Confidence 6788999999999999998777765544455676652 11110 00 0112222221110000000
Q ss_pred HhhhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHhCCCcEEEEE
Q 026589 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (236)
Q Consensus 79 ~~~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (236)
+.. + ..+.. -.. +++++++||-..++. .++. ++++.++..|.+++++-
T Consensus 66 ~~~---~-~~~~~-~~~--~~dvviIDEaq~l~~---~~v~-~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 66 TDI---F-ELIEE-EGE--KIDCVLIDEAQFLDK---EQVV-QLAEVLDDLGIPVICYG 113 (190)
T ss_pred HHH---H-HHHHh-hCC--CCCEEEEEccccCCH---HHHH-HHHHHHHHcCCeEEEEe
Confidence 111 1 11111 223 679999999943754 2345 67777777888887774
No 491
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.16 E-value=1.6e-06 Score=58.56 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCC
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVR 30 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~ 30 (236)
++.|.|||||||||++.++.=.+-+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 589999999999999999988776654
No 492
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.16 E-value=2.2e-06 Score=69.94 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d 39 (236)
.+++|+|||||||||+++.++|++.+ +.++|.+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~ 36 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDD 36 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcc
Confidence 57899999999999999999999876 4666544
No 493
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.16 E-value=8.3e-06 Score=81.21 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=38.8
Q ss_pred HHHHhcCCCCCEEEEeCCCc-c-cHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccch
Q 026589 90 AEELDNYLDDDYLVFDCPGQ-I-ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV 147 (236)
Q Consensus 90 a~~l~~~~~p~~lllDEPt~-L-D~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~ 147 (236)
.+.+.. +|+++++|||.. | |+.....+. +.++.+.+.|.++++++ |...+.
T Consensus 646 ~~~l~~--~p~illlDE~~~~L~d~~~~~~i~-~~lk~~RK~~~~vil~T----q~~~d~ 698 (818)
T PRK13830 646 EKRLTG--APSLIILDEAWLMLGHPVFRDKIR-EWLKVLRKANCAVVLAT----QSISDA 698 (818)
T ss_pred HHhcCC--CCcEEEEECchhhcCCHHHHHHHH-HHHHHHHHcCCEEEEEe----CCHHHH
Confidence 334445 999999999998 9 688777777 99999877787777664 665544
No 494
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=5.1e-06 Score=63.44 Aligned_cols=112 Identities=26% Similarity=0.348 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC 77 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~-----~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~ 77 (236)
-++.|.||+|+||||+++.+...+... ...+...+... ..+.++. ..++.+.++....... .
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~i~~~l~~~~~~~~--~ 71 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS---------SRTPRDF--AQEILEALGLPLKSRQ--T 71 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH---------HSSHHHH--HHHHHHHHT-SSSSTS---
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC---------CCCHHHH--HHHHHHHhCccccccC--C
Confidence 467899999999999999999976542 23333322211 1123333 6678888887765410 0
Q ss_pred HHhhhhcHHHHHHHHHhcCCCCCEEEEeCCCcccHHhHHHHHHHHHHHHHh-CCCcEEEE
Q 026589 78 MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (236)
Q Consensus 78 ~~~~~~~~s~~la~~l~~~~~p~~lllDEPt~LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (236)
...+ . ..+.+.+... ...++++||--.+. ....+ +.++.+.+ .+.+++++
T Consensus 72 ~~~l---~-~~~~~~l~~~-~~~~lviDe~~~l~---~~~~l-~~l~~l~~~~~~~vvl~ 122 (131)
T PF13401_consen 72 SDEL---R-SLLIDALDRR-RVVLLVIDEADHLF---SDEFL-EFLRSLLNESNIKVVLV 122 (131)
T ss_dssp HHHH---H-HHHHHHHHHC-TEEEEEEETTHHHH---THHHH-HHHHHHTCSCBEEEEEE
T ss_pred HHHH---H-HHHHHHHHhc-CCeEEEEeChHhcC---CHHHH-HHHHHHHhCCCCeEEEE
Confidence 1111 1 3445555551 33499999988764 25666 66666654 34444433
No 495
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.14 E-value=9.9e-06 Score=64.92 Aligned_cols=118 Identities=20% Similarity=0.230 Sum_probs=69.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 026589 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (236)
Q Consensus 4 ~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~~ 83 (236)
-++++|.+.+|||||++.|+|.. ..+.|.+ . .|+.- ..+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~------~~v~n~p-G---------~Tv~~-------------------------~~g 40 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK------QKVGNWP-G---------TTVEK-------------------------KEG 40 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS------EEEEEST-T---------SSSEE-------------------------EEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------ceecCCC-C---------CCeee-------------------------eeE
Confidence 37899999999999999999974 3333321 1 11110 000
Q ss_pred cHHHHHHHHHhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHhCCCcEEEEEecccccccchhhHhhhhHHHHHHH
Q 026589 84 NLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (236)
Q Consensus 84 ~~s~~la~~l~~~~~p~~lllDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~~~~l~~~~~~ 161 (236)
.+ .+.+.++.+.|-|+. +...+..+-+ ..+.+.... .=++++++|+..+. +-+......
T Consensus 41 ~~---------~~~~~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~~~-~D~ii~VvDa~~l~-------r~l~l~~ql 101 (156)
T PF02421_consen 41 IF---------KLGDQQVELVDLPGIYSLSSKSEEERV--ARDYLLSEK-PDLIIVVVDATNLE-------RNLYLTLQL 101 (156)
T ss_dssp EE---------EETTEEEEEEE----SSSSSSSHHHHH--HHHHHHHTS-SSEEEEEEEGGGHH-------HHHHHHHHH
T ss_pred EE---------EecCceEEEEECCCcccCCCCCcHHHH--HHHHHhhcC-CCEEEEECCCCCHH-------HHHHHHHHH
Confidence 00 001567899999994 7766654422 122232333 33455667877643 334455566
Q ss_pred HhhCCCeeeeccccccccch
Q 026589 162 VQLELPHVNILSKMDLVTNK 181 (236)
Q Consensus 162 i~~~~p~i~vlsk~dll~~~ 181 (236)
..++.|.+-++||+|.+++.
T Consensus 102 ~e~g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 102 LELGIPVVVVLNKMDEAERK 121 (156)
T ss_dssp HHTTSSEEEEEETHHHHHHT
T ss_pred HHcCCCEEEEEeCHHHHHHc
Confidence 68899999999999999765
No 496
>PTZ00035 Rad51 protein; Provisional
Probab=98.11 E-value=3.3e-05 Score=69.43 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-C-----CCceE-EEecc
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCE-T-----VRRTM-HIVNL 38 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~-~-----~~G~i-~i~~~ 38 (236)
.++.|.||+|||||||+..++...+ | ..|++ +++..
T Consensus 119 ~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE 161 (337)
T PTZ00035 119 SITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTE 161 (337)
T ss_pred eEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEcc
Confidence 5788999999999999999987554 3 45666 55543
No 497
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.11 E-value=2.6e-06 Score=70.54 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 026589 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (236)
Q Consensus 2 ~~~~~iiGpnGsGKSTLl~~l~g~l~ 27 (236)
+.+++|+||+|||||||++.|++.++
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36799999999999999999999875
No 498
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.10 E-value=0.00016 Score=66.75 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~ 40 (236)
.+++++|++||||||++.-|+.++...+.+|.+...|+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 67999999999999999999988875555888887775
No 499
>PRK06526 transposase; Provisional
Probab=98.09 E-value=7.6e-06 Score=70.69 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCCcCCHHHhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 026589 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~g~l~~~~G~i~i~~~d~~~~~~~~~~~~~i~~~i~~~~~l~~~~l~~~~~~~~~~~~~~ 82 (236)
..+.++||+|+|||+|+.+|.......+-+|.+ ++..++++.+.-....
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f---------------------~t~~~l~~~l~~~~~~---------- 147 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF---------------------ATAAQWVARLAAAHHA---------- 147 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh---------------------hhHHHHHHHHHHHHhc----------
Confidence 457899999999999999997643221112111 1123333333211000
Q ss_pred hcHHHHHHHHHhcCCCCCEEEEeCCCc--ccHHhHHHHHHHHHHHHHhCCCcEEEE
Q 026589 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (236)
Q Consensus 83 ~~~s~~la~~l~~~~~p~~lllDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (236)
+.....+ ..+ . ++++||+||.+. .+......+. +++....+.+ .+|++
T Consensus 148 ~~~~~~l-~~l-~--~~dlLIIDD~g~~~~~~~~~~~L~-~li~~r~~~~-s~Iit 197 (254)
T PRK06526 148 GRLQAEL-VKL-G--RYPLLIVDEVGYIPFEPEAANLFF-QLVSSRYERA-SLIVT 197 (254)
T ss_pred CcHHHHH-HHh-c--cCCEEEEcccccCCCCHHHHHHHH-HHHHHHHhcC-CEEEE
Confidence 1110111 111 3 789999999996 5677666666 7777654444 44444
No 500
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.09 E-value=1.4e-06 Score=70.75 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH---hCCCCCCceEE
Q 026589 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMH 34 (236)
Q Consensus 3 ~~~~iiGpnGsGKSTLl~~l~---g~l~~~~G~i~ 34 (236)
-+++|+||+||||||+++.|+ |+..++.|++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~ 38 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLL 38 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHH
Confidence 468999999999999999999 66666666543
Done!