Query 026590
Match_columns 236
No_of_seqs 94 out of 96
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:59:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02729 PSII-Q subunit 100.0 4.4E-86 9.5E-91 577.3 14.8 219 17-236 1-220 (220)
2 PF05757 PsbQ: Oxygen evolving 100.0 1.3E-63 2.8E-68 434.5 5.7 194 39-236 4-202 (202)
3 PLN02999 photosystem II oxygen 100.0 5.2E-56 1.1E-60 381.2 15.2 177 32-236 12-190 (190)
4 PLN02956 PSII-Q subunit 100.0 5.2E-41 1.1E-45 289.1 13.5 112 124-235 74-185 (185)
5 TIGR03042 PS_II_psbQ_bact phot 100.0 3.9E-28 8.3E-33 202.4 10.4 103 133-235 39-141 (142)
6 PF13413 HTH_25: Helix-turn-he 80.3 3.9 8.5E-05 29.6 4.5 58 122-179 3-62 (62)
7 PF13801 Metal_resist: Heavy-m 73.4 20 0.00044 26.6 7.0 46 162-208 61-106 (125)
8 COG5420 Uncharacterized conser 62.2 13 0.00029 28.3 3.8 47 164-211 17-63 (71)
9 PF13324 GCIP: Grap2 and cycli 61.9 29 0.00064 31.3 6.8 94 141-235 42-142 (275)
10 PLN00042 photosystem II oxygen 53.8 19 0.00042 33.5 4.2 27 51-79 38-64 (260)
11 PF05082 Rop-like: Rop-like; 51.4 34 0.00073 25.8 4.4 45 164-209 13-57 (66)
12 COG1426 Predicted transcriptio 46.0 36 0.00078 31.5 4.7 66 121-186 8-75 (284)
13 PRK14151 heat shock protein Gr 45.7 1.2E+02 0.0026 26.4 7.6 67 163-234 42-117 (176)
14 PRK11546 zraP zinc resistance 45.7 45 0.00097 28.5 4.9 41 164-205 65-105 (143)
15 PF11221 Med21: Subunit 21 of 42.0 2E+02 0.0043 23.9 8.1 36 129-187 61-96 (144)
16 PRK14140 heat shock protein Gr 41.9 1.4E+02 0.0031 26.4 7.6 47 188-234 83-133 (191)
17 PF10399 UCR_Fe-S_N: Ubiquitin 39.6 24 0.00052 24.1 1.9 18 62-79 6-23 (41)
18 PRK09105 putative aminotransfe 36.9 53 0.0011 30.4 4.4 17 65-81 5-21 (370)
19 KOG4519 Phosphomevalonate kina 35.3 62 0.0013 32.0 4.7 66 146-211 247-330 (459)
20 PRK14141 heat shock protein Gr 34.9 1.8E+02 0.0038 26.2 7.2 47 188-234 77-133 (209)
21 PF08822 DUF1804: Protein of u 34.9 2.7E+02 0.0058 24.4 8.1 55 115-169 5-61 (165)
22 KOG0375 Serine-threonine phosp 34.2 33 0.00071 34.2 2.6 61 118-182 48-109 (517)
23 cd06845 Bcl-2_like Apoptosis r 33.4 1.2E+02 0.0025 24.6 5.4 54 129-201 29-82 (144)
24 PRK14143 heat shock protein Gr 33.3 2.5E+02 0.0055 25.7 8.0 67 163-234 89-164 (238)
25 PF01322 Cytochrom_C_2: Cytoch 32.7 1E+02 0.0022 24.1 4.9 41 187-227 73-113 (122)
26 COG0474 MgtA Cation transport 31.6 17 0.00037 38.6 0.3 23 1-23 350-372 (917)
27 CHL00102 rps20 ribosomal prote 30.7 1.1E+02 0.0024 24.2 4.7 44 189-232 26-69 (93)
28 PTZ00208 65 kDa invariant surf 30.7 2.1E+02 0.0045 28.8 7.4 77 154-231 53-138 (436)
29 PRK14150 heat shock protein Gr 28.7 4E+02 0.0087 23.4 8.3 69 161-234 58-135 (193)
30 PF03954 Lectin_N: Hepatic lec 28.1 24 0.00053 30.1 0.6 15 91-106 11-25 (138)
31 PLN03190 aminophospholipid tra 28.0 22 0.00047 39.1 0.3 15 2-16 456-470 (1178)
32 PRK14154 heat shock protein Gr 27.9 2.9E+02 0.0062 24.9 7.3 47 188-234 98-149 (208)
33 PRK14160 heat shock protein Gr 27.5 3.8E+02 0.0082 24.2 8.0 48 188-235 107-155 (211)
34 COG3093 VapI Plasmid maintenan 27.5 73 0.0016 26.0 3.2 29 119-147 12-41 (104)
35 PF14227 UBN2_2: gag-polypepti 26.8 1.3E+02 0.0029 23.0 4.5 41 115-155 20-64 (119)
36 PRK09706 transcriptional repre 25.8 1.6E+02 0.0035 23.5 4.9 30 121-150 10-39 (135)
37 PF06248 Zw10: Centromere/kine 25.7 4.7E+02 0.01 26.2 9.1 34 198-231 108-141 (593)
38 TIGR01042 V-ATPase_V1_A V-type 25.4 2.5E+02 0.0054 29.3 7.2 24 46-69 387-411 (591)
39 COG5377 Phage-related protein, 25.4 1.4E+02 0.003 28.5 5.0 50 98-153 194-251 (319)
40 PRK10856 cytoskeletal protein 25.0 1.2E+02 0.0026 28.7 4.7 64 121-184 19-84 (331)
41 TIGR02811 formate_TAT formate 25.0 77 0.0017 23.5 2.7 9 63-71 7-15 (66)
42 PRK05685 fliS flagellar protei 24.0 2.6E+02 0.0055 22.8 5.9 63 171-235 10-72 (132)
43 PF01627 Hpt: Hpt domain; Int 23.6 2.6E+02 0.0056 19.4 6.5 28 140-167 8-38 (90)
44 TIGR01652 ATPase-Plipid phosph 23.5 29 0.00063 37.3 0.3 19 2-20 362-380 (1057)
45 PF12732 YtxH: YtxH-like prote 23.5 1.5E+02 0.0031 21.7 3.9 45 188-232 28-72 (74)
46 COG5057 LAG1 Phosphotyrosyl ph 23.4 90 0.002 30.2 3.5 38 197-234 33-70 (353)
47 PF14276 DUF4363: Domain of un 23.4 2.3E+02 0.005 22.2 5.3 42 191-232 21-62 (121)
48 PF08020 DUF1706: Protein of u 23.2 1.9E+02 0.0041 24.9 5.2 35 115-149 82-118 (166)
49 PF10907 DUF2749: Protein of u 22.7 1.2E+02 0.0026 23.0 3.3 31 95-131 21-52 (66)
50 PF08006 DUF1700: Protein of u 21.6 1.2E+02 0.0026 25.5 3.5 27 175-201 9-35 (181)
51 PF14276 DUF4363: Domain of un 20.8 4.2E+02 0.009 20.7 7.4 80 146-232 32-111 (121)
52 PRK14145 heat shock protein Gr 20.8 3E+02 0.0066 24.5 6.0 47 188-234 91-138 (196)
53 PRK14142 heat shock protein Gr 20.3 1.6E+02 0.0034 27.0 4.2 45 188-234 79-123 (223)
54 KOG0203 Na+/K+ ATPase, alpha s 20.2 30 0.00066 37.5 -0.4 30 2-31 369-398 (1019)
55 PRK14164 heat shock protein Gr 20.1 3.9E+02 0.0085 24.2 6.7 45 188-234 116-160 (218)
No 1
>PLN02729 PSII-Q subunit
Probab=100.00 E-value=4.4e-86 Score=577.33 Aligned_cols=219 Identities=73% Similarity=1.118 Sum_probs=213.7
Q ss_pred hhhhhcccCccCCCCcccCCCCCCCCccceeeeeeeeecccccchhh-hhhhhHHHHHHHHHHhcccccccccccccCCc
Q 026590 17 MAHLANLNGVSETLPAVPNLPKFQKFPKRAKIIGLLGHKAENFQDQA-QITRRVSLGLASLALIGSTSTNGVSLAEDNGL 95 (236)
Q Consensus 17 ma~~a~l~g~s~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~RR~~lgL~a~~l~~~~~~~~~~~a~~~~~ 95 (236)
|||++||||+|+|+|.|++|.+.++++++++++||+|+++.|+++++ +++||++|||+|+||+|+ +++|+++|+++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~rr~~lgl~a~~l~~~-s~~~~~~A~~~~i 79 (220)
T PLN02729 1 MAHLANLNGLTETLPAIPKLRNLQRTRKRGKIIGFLCKKAENFQEDSFQTTRRLALGLASIALIGN-SGNGVSLAEDNGF 79 (220)
T ss_pred CcchhcccccccccccchhhhcchhhhhhhhhhhHhhhhhhhcccchhhhhHHHHHHHHHHHHhcc-hhhhHHHhcccCc
Confidence 99999999999999999999999999999999999999999999877 999999999999999999 6799999999999
Q ss_pred eecCCCCCCccCCcccccCcchhhHHHHhhhhcCCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhh
Q 026590 96 WVTGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYD 175 (236)
Q Consensus 96 ~~~~p~P~ps~~n~~~~~~~gtr~~lkerf~~~~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~D 175 (236)
|+.|||||||+.|+++|++||||||||||||+||++|+||++|||+||++|++||+|||+++|+|||+|||+|++|||||
T Consensus 80 ~~~~P~P~pst~n~~~~e~~gtRsfLKerfy~~~l~p~~aa~RiK~sA~dLl~vKdLId~~sW~yVq~~LRLKAsyL~yD 159 (220)
T PLN02729 80 WLDGPLPVPSVDNKIVNEKTGTRSFLKKGIYMADIGTKGRMYRVKKYAFDLLALEDLIGPDTLNYVRKYLRLKSTFMYYD 159 (220)
T ss_pred eeCCCCCCCccccccccccchHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHH
Confidence 95555599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhcC
Q 026590 176 FDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236 (236)
Q Consensus 176 L~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlaki~ 236 (236)
|++||+++|++|||+|++|+|+||++|++||||||+||++++++||++|+++|||||+|||
T Consensus 160 L~tvIsskP~~eKk~L~~LankLFdn~~eLD~AaR~Ks~~eae~yY~~Tv~aLdeVl~k~~ 220 (220)
T PLN02729 160 FDKLISAAPVDDKQPLTDLANRLFDNFEKLEDASKRKNLSETESSYKDTKTLLQEVMDRMA 220 (220)
T ss_pred HHHHhccCChhhhHHHHHHHHHHHhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 2
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=100.00 E-value=1.3e-63 Score=434.53 Aligned_cols=194 Identities=34% Similarity=0.524 Sum_probs=105.8
Q ss_pred CCCCccceeeeeeeeecccccchhhhhhhhHHHH-HHHHHHhcccccccccccccCCcee-cCCCCCCccCCcccccCcc
Q 026590 39 FQKFPKRAKIIGLLGHKAENFQDQAQITRRVSLG-LASLALIGSTSTNGVSLAEDNGLWV-TGPLPVPPVYNNIANEKTG 116 (236)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~RR~~lg-L~a~~l~~~~~~~~~~~a~~~~~~~-~~p~P~ps~~n~~~~~~~g 116 (236)
.++.+++....+++||+++ .+++.+++||++|| |+|++++++ +++++++|+ ++|+ +||||||+++++|+++.||
T Consensus 4 ~~~~~~~~~r~~~~vra~~-~~~~~~~~RRa~l~~l~a~~~~~~-~~~~~~~a~--~~~~~~~~~~p~~~~~~g~~~~~~ 79 (202)
T PF05757_consen 4 TSSSRVASRRAGVVVRASQ-SPAQQQTSRRAVLGSLLAAALAGG-SFAQAAAAA--AWAIKVGLPPPPSGNLPGTNNSDG 79 (202)
T ss_dssp ---------------------------------------------------------S-EE-------------------
T ss_pred CcCCccccccccceecccc-CcccccccHHHHHHHHHHHHHHhh-hcccccccc--hhhhccCCCCCCCCCCCCcccccc
Confidence 3445566788889999987 34455899999998 999999998 667888887 4666 9999999998899999999
Q ss_pred hhhH---HHHhhhhcCCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHH
Q 026590 117 TRSF---LKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTD 193 (236)
Q Consensus 117 tr~~---lkerf~~~~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~ 193 (236)
|||| +|+|||+|+++|+||++|||+||++|+.|++|||+++|+|||+|||+|++||||||++||+++|+++||+|++
T Consensus 80 aRd~~l~lk~rf~~~~l~~~ea~~Rik~sa~~L~~lk~lIdk~sW~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~ 159 (202)
T PF05757_consen 80 ARDFDLPLKERFYIQPLSPEEAAARIKESAKRLLSLKELIDKKSWPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTD 159 (202)
T ss_dssp --------TT--EE----CCCHHHHHHHHHHHHCCCHHHHHTT-HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHH
T ss_pred ccccccchhhceecCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhcC
Q 026590 194 LANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236 (236)
Q Consensus 194 LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlaki~ 236 (236)
|+|+||++||+||||+|+||.+++++||++|+++|||||++||
T Consensus 160 La~~lf~~ie~LD~Aar~K~~~~a~~~Y~~t~~~Ldevla~la 202 (202)
T PF05757_consen 160 LANKLFDNIEELDYAARSKDVPEAEKYYADTVKALDEVLAKLA 202 (202)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHCCH-
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999986
No 3
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
Probab=100.00 E-value=5.2e-56 Score=381.22 Aligned_cols=177 Identities=24% Similarity=0.365 Sum_probs=156.1
Q ss_pred cccCCCCCCCCc-cceeeeeeeeecccccchhhhhhhhHHHH-HHHHHHhcccccccccccccCCceecCCCCCCccCCc
Q 026590 32 AVPNLPKFQKFP-KRAKIIGLLGHKAENFQDQAQITRRVSLG-LASLALIGSTSTNGVSLAEDNGLWVTGPLPVPPVYNN 109 (236)
Q Consensus 32 ~~~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~RR~~lg-L~a~~l~~~~~~~~~~~a~~~~~~~~~p~P~ps~~n~ 109 (236)
+.....+.|... +..+++++.+..+| ..++||.++. +.++.++|++ ++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~rr~~~~~~l~~~~~~~~-~~~~~--------------------- 64 (190)
T PLN02999 12 PYLLRKIYHRRVNQPFSVVCCTGEPQQ-----DIFTRRRTLTSLITFTVIGGA-TSSAL--------------------- 64 (190)
T ss_pred cccccccccccccCcchhhhcCCCchh-----hhHHHHHHHHHHHHHHHHhhc-cCcHH---------------------
Confidence 433334444444 56888888888754 4567998885 8999998883 33222
Q ss_pred ccccCcchhhHHHHhhhhcCCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCCh
Q 026590 110 IANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQ 189 (236)
Q Consensus 110 ~~~~~~gtr~~lkerf~~~~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK 189 (236)
.+|+||||||||||||+||++|+||++|||++|++|++||+|||+++|+|||+|||++++||+|||+++|+++|++||+
T Consensus 65 -~~e~~GtRsfLKerfy~p~lspeeAaaRiK~sA~dLl~vK~LId~~aW~YVq~~LRlkasyLryDL~tiIsskP~~eK~ 143 (190)
T PLN02999 65 -AQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRN 143 (190)
T ss_pred -HHhhhhhHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhH
Confidence 3388999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhcC
Q 026590 190 PLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236 (236)
Q Consensus 190 ~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlaki~ 236 (236)
+|++|+++|||||++||||||+||++|+++||++||++||||++.+|
T Consensus 144 ~L~~LankLFdnvt~LDyAAR~K~~~eae~yY~~Tv~slddVl~~l~ 190 (190)
T PLN02999 144 DYVQAANELVENMSELDYYVRTPKVYESYLYYEKTLKSIDNVVELLA 190 (190)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999875
No 4
>PLN02956 PSII-Q subunit
Probab=100.00 E-value=5.2e-41 Score=289.13 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=110.8
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHH
Q 026590 124 AIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFE 203 (236)
Q Consensus 124 rf~~~~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le 203 (236)
|||+|+++||||++|||++|++|++||+||++++|+|||||||+|++||+|||++||+++|++|||++++|+++||++|+
T Consensus 74 ~~~~p~~speeA~ar~k~~A~~l~~LK~LI~k~~W~yvrn~LRgp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LFd~l~ 153 (185)
T PLN02956 74 RLTAPERTVEEAESGVRGHAENLLRVKALIESESWKEAQKALRRSASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVT 153 (185)
T ss_pred eecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHhhc
Q 026590 204 KLEVAVSTKNFPQTQSTYADTAVILHEVMDRM 235 (236)
Q Consensus 204 ~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlaki 235 (236)
+||||||+||.+++++||++|+++||+||+||
T Consensus 154 ~LD~AAR~kd~~~a~k~Y~~tva~lD~Vl~~i 185 (185)
T PLN02956 154 KLDYAARDKDETRVWEYYENIVASLDDIFSRI 185 (185)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999997
No 5
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=99.95 E-value=3.9e-28 Score=202.45 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCC
Q 026590 133 KGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTK 212 (236)
Q Consensus 133 ~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~K 212 (236)
++-+.+|.+.+++|.+|++||++++|++|||+||+++|+||+||++||+++|+++||++++|+++||+++++||+||+.|
T Consensus 39 ~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~AA~~k 118 (142)
T TIGR03042 39 QRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEAARLQ 118 (142)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhc
Q 026590 213 NFPQTQSTYADTAVILHEVMDRM 235 (236)
Q Consensus 213 n~~~a~~~Y~~Tv~~LdeVlaki 235 (236)
|.+++++||++++++||+.+.-|
T Consensus 119 d~~~a~k~Y~~av~~~dafl~~~ 141 (142)
T TIGR03042 119 DGPQAQKAYQKAAADFDAYLDLL 141 (142)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999988765
No 6
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=80.26 E-value=3.9 Score=29.55 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=42.0
Q ss_pred HHhhhhcCCChhHHHHHHHHHHHHHHHhh--hhcCCCChHHHHHHhhhcccchhhhHHHH
Q 026590 122 KKAIYIANIGTKGRIHRLKRYAFDLLAMA--DLIGPDTLNYVRKYLRLKSTFMYYDFDNV 179 (236)
Q Consensus 122 kerf~~~~ls~~ea~~RiK~sA~~L~~lk--dLId~~sW~yVr~yLRlka~~Lr~DL~tl 179 (236)
|+.=-..++|.++...++|=...-|.++| ++=.-..+.|++.|||.=+.+|.-|-+.|
T Consensus 3 r~~R~~~glsl~~va~~t~I~~~~l~aiE~~~~~~lp~~~y~rg~lr~Ya~~Lgld~~~l 62 (62)
T PF13413_consen 3 REAREAKGLSLEDVAEETKISVSYLEAIENGDFDSLPSPVYARGYLRKYARFLGLDPDEL 62 (62)
T ss_dssp HHHHHCTT--HHHHHHHCS--HHHHHHHHCT-GCCSSSHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHcCCCHHHHHHHhCCCHHHHHHHHCcChhhCCcHHHHHHHHHHHHHHhCcCcccC
Confidence 33344578999999999999999999999 34455689999999999999999887654
No 7
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=73.38 E-value=20 Score=26.56 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=33.4
Q ss_pred HHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHH
Q 026590 162 RKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVA 208 (236)
Q Consensus 162 r~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~A 208 (236)
...+|....-++.+|..++.+-+.| ...+..+..++.+.-.+++..
T Consensus 61 ~~~~r~~~~~~r~~l~~ll~~~~~D-~~~i~a~~~~~~~~~~~l~~~ 106 (125)
T PF13801_consen 61 MRALRQELRAARQELRALLAAPPPD-EAAIEALLEEIREAQAELRQE 106 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778899999999987777 677877777777766665543
No 8
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=62.24 E-value=13 Score=28.25 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=42.4
Q ss_pred HhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhC
Q 026590 164 YLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVST 211 (236)
Q Consensus 164 yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~ 211 (236)
-|..++|...-||-.+...+|.+ .-++-+.|.+-|..+.+||.+-++
T Consensus 17 kLqsrAg~akm~LhDLAEgLP~~-wtei~~VA~kt~~~yaeLD~~k~E 63 (71)
T COG5420 17 KLQSRAGQAKMELHDLAEGLPVK-WTEIMAVAEKTFEAYAELDAAKRE 63 (71)
T ss_pred HHHHHHHHHHhhHHHHhccCCcc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999998 999999999999999999987653
No 9
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=61.90 E-value=29 Score=31.30 Aligned_cols=94 Identities=11% Similarity=0.167 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHh-------hcCCCCChhHHHHHHHHHHhHHHHHHHHhCCC
Q 026590 141 RYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVIS-------AAAPTDKQPLTDLANRLFESFEKLEVAVSTKN 213 (236)
Q Consensus 141 ~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIs-------skPkdeKK~l~~LankLF~~le~LD~Aar~Kn 213 (236)
++-..|..+=-.+-...++-.++.||....-+-.-+..|+. +..+++++.....++..++.-+.|-...++ |
T Consensus 42 ~~l~~l~~~~~~~~~~~G~tL~~~i~~~v~~lv~~~~~L~~~~~~~~~s~~~~~~~~~~~~tG~VWeaCd~l~~lp~~-n 120 (275)
T PF13324_consen 42 NALLGLLSLYHGLPKGQGPTLRKEIRSAVKSLVDSSIQLVEELVSAYGSSSQSEKNEVLQSTGRVWEACDQLKKLPKD-N 120 (275)
T ss_dssp HHHHHHHHHHTTS-GGG-HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHTTTTS-SS-H
T ss_pred HHHHHHHHHHhhCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCccchhHHHHhHHHHHHHHHHHhhhh-h
Confidence 33334443333344455555566665555554444333333 234566888889999999999999877765 6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc
Q 026590 214 FPQTQSTYADTAVILHEVMDRM 235 (236)
Q Consensus 214 ~~~a~~~Y~~Tv~~LdeVlaki 235 (236)
...+.+.-.+....++|++..|
T Consensus 121 ~~av~~~~~~~~~lvkDa~~El 142 (275)
T PF13324_consen 121 KVAVLRRLKQSRDLVKDALEEL 142 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777776543
No 10
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=53.78 E-value=19 Score=33.54 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=16.8
Q ss_pred eeeecccccchhhhhhhhHHHHHHHHHHh
Q 026590 51 LLGHKAENFQDQAQITRRVSLGLASLALI 79 (236)
Q Consensus 51 ~~~~~~~~~~~~~~~~RR~~lgL~a~~l~ 79 (236)
+.|++|.+ +....+||..|.|++.+++
T Consensus 38 ~~~~~~~~--~~~~~srr~~l~~~~ga~a 64 (260)
T PLN00042 38 VVCRAQEE--DNSAVSRRAALALLAGAAA 64 (260)
T ss_pred eeeecccc--ccccccHHHHHHHHHHHHH
Confidence 67787653 3346789987766544444
No 11
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=51.42 E-value=34 Score=25.84 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=40.9
Q ss_pred HhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHH
Q 026590 164 YLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAV 209 (236)
Q Consensus 164 yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aa 209 (236)
-|..+++.+.-||-.|.--+|-+ -..+-++|.+.|+-+.+||.|=
T Consensus 13 KL~~~A~~~kmdLHDLaEdLP~~-w~~i~~vA~~ty~a~~~l~~ak 57 (66)
T PF05082_consen 13 KLNRKATQAKMDLHDLAEDLPTN-WEEIPEVAQKTYDAYAELDEAK 57 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTT-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999998 9999999999999999999764
No 12
>COG1426 Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]
Probab=45.97 E-value=36 Score=31.53 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=54.2
Q ss_pred HHHhhhhcCCChhHHHHHHHHHHHHHHHhh-hhc-CCCChHHHHHHhhhcccchhhhHHHHHhhcCCC
Q 026590 121 LKKAIYIANIGTKGRIHRLKRYAFDLLAMA-DLI-GPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPT 186 (236)
Q Consensus 121 lkerf~~~~ls~~ea~~RiK~sA~~L~~lk-dLI-d~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkd 186 (236)
||+.=-..++|.+|.+.|++=.-.-|.+|| +.. .--.=.|+|-|||.=+.||..|-+.++...+..
T Consensus 8 Lr~~Re~~gLsL~dva~~t~I~~~~L~aiEeg~~~~lp~~~y~rG~ir~YA~~l~ld~~~l~~~~~~~ 75 (284)
T COG1426 8 LRQAREEKGLSLEDVAARTKIRKSYLRALEEGNFDKLPGPVYIRGYIRSYAKFLGLDEDELLQAFEDE 75 (284)
T ss_pred HHHHHHHcCCCHHHHHHHhCccHHHHHHHhcCccccccchHHHHHHHHHHHHHhCCCHHHHHHHhhhc
Confidence 555555689999999999998888888888 333 335668999999999999999999999996543
No 13
>PRK14151 heat shock protein GrpE; Provisional
Probab=45.71 E-value=1.2e+02 Score=26.42 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=41.1
Q ss_pred HHhhhcccchhhhHHHHHhhcCCC----CChhHHHHHHHHHHhHHHHHHHHhCCC-----hhHHHHHHHHHHHHHHHHHh
Q 026590 163 KYLRLKSTFMYYDFDNVISAAAPT----DKQPLTDLANRLFESFEKLEVAVSTKN-----FPQTQSTYADTAVILHEVMD 233 (236)
Q Consensus 163 ~yLRlka~~Lr~DL~tlIsskPkd----eKK~l~~LankLF~~le~LD~Aar~Kn-----~~~a~~~Y~~Tv~~LdeVla 233 (236)
.|||+.+ |+.+.-...-++ .+-....+..+|+.-+|+|+.|....+ ......-++-+...|.++|.
T Consensus 42 ~~lR~~A-----e~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~Gv~mi~k~l~~~L~ 116 (176)
T PRK14151 42 QSLRAAA-----DLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKPMREGVELTLKMFQDTLK 116 (176)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4555554 455544442222 245566788999999999999987432 12233455666677777776
Q ss_pred h
Q 026590 234 R 234 (236)
Q Consensus 234 k 234 (236)
+
T Consensus 117 k 117 (176)
T PRK14151 117 R 117 (176)
T ss_pred H
Confidence 5
No 14
>PRK11546 zraP zinc resistance protein; Provisional
Probab=45.69 E-value=45 Score=28.51 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=25.4
Q ss_pred HhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHH
Q 026590 164 YLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKL 205 (236)
Q Consensus 164 yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~L 205 (236)
.||.+.---+.+|+.+.++-+.| .+.+..|++++.+=-.+|
T Consensus 65 ~LRqqL~aKr~ELnALl~~~~pD-~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 65 ALRQQLVSKRYEYNALLTANPPD-SSKINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHHH
Confidence 35555566688999999886555 454555555554433333
No 15
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=41.96 E-value=2e+02 Score=23.85 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=27.1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCC
Q 026590 129 NIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTD 187 (236)
Q Consensus 129 ~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkde 187 (236)
+.++++-...+++.|.+|.. --++++.||++||..+
T Consensus 61 ~~~~~~~~~~~~elA~dIi~-----------------------kakqIe~LIdsLPg~~ 96 (144)
T PF11221_consen 61 PDPPEEFEENIKELATDIIR-----------------------KAKQIEYLIDSLPGIE 96 (144)
T ss_dssp ---HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHSTTSS
T ss_pred CCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHhCCCCC
Confidence 34778888888888888874 2478999999999854
No 16
>PRK14140 heat shock protein GrpE; Provisional
Probab=41.90 E-value=1.4e+02 Score=26.45 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHhCCChhHH----HHHHHHHHHHHHHHHhh
Q 026590 188 KQPLTDLANRLFESFEKLEVAVSTKNFPQT----QSTYADTAVILHEVMDR 234 (236)
Q Consensus 188 KK~l~~LankLF~~le~LD~Aar~Kn~~~a----~~~Y~~Tv~~LdeVlak 234 (236)
+-...++..+|+.-+|+|+.|....+.... ..-++-+.+.|..+|.+
T Consensus 83 ~~a~~~~~~~LLpvlDnLerAl~~~~~~~~~~~i~~Gv~mi~k~l~~~L~k 133 (191)
T PRK14140 83 KYRAQSLASDLLPALDNFERALQIEADDEQTKSLLKGVEMVHRQLLEALKK 133 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 556677889999999999999986433222 22344556666666655
No 17
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=39.63 E-value=24 Score=24.10 Aligned_cols=18 Identities=33% Similarity=0.217 Sum_probs=10.6
Q ss_pred hhhhhhhHHHHHHHHHHh
Q 026590 62 QAQITRRVSLGLASLALI 79 (236)
Q Consensus 62 ~~~~~RR~~lgL~a~~l~ 79 (236)
....+||.+|.+++.++.
T Consensus 6 ~~~~~RRdFL~~at~~~g 23 (41)
T PF10399_consen 6 PVDPTRRDFLTIATSAVG 23 (41)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 447899999987765544
No 18
>PRK09105 putative aminotransferase; Provisional
Probab=36.94 E-value=53 Score=30.36 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHhcc
Q 026590 65 ITRRVSLGLASLALIGS 81 (236)
Q Consensus 65 ~~RR~~lgL~a~~l~~~ 81 (236)
-+||++|.|++.|.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (370)
T PRK09105 5 LSRRSFLRLAALGAAAA 21 (370)
T ss_pred hhHHHHHHHHHHHHhhh
Confidence 47999888877665544
No 19
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=35.34 E-value=62 Score=31.98 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=49.1
Q ss_pred HHHhhhhcCCCChHHHHHHhhhcccc---------------hhhhHHHHHhh-cCCCCC--hhHHHHHHHHHHhHHHHHH
Q 026590 146 LLAMADLIGPDTLNYVRKYLRLKSTF---------------MYYDFDNVISA-AAPTDK--QPLTDLANRLFESFEKLEV 207 (236)
Q Consensus 146 L~~lkdLId~~sW~yVr~yLRlka~~---------------Lr~DL~tlIss-kPkdeK--K~l~~LankLF~~le~LD~ 207 (236)
+.+|..+++++.|+.+++.-++++++ |-+-.++---+ .|++.| +.+-+++.+|-+.+.+||.
T Consensus 247 ~~el~~~V~k~~W~~~~~~f~LP~~~~L~mGd~~gGSsTp~mV~kVk~Wq~s~~pe~~k~~~~lddansr~~~~l~kl~~ 326 (459)
T KOG4519|consen 247 LNELIGTVLKGKWDNKRTEFSLPPLMNLFMGDGSGGSSTPSMVGKVKKWQMSDPPEARKNWQNLDDANSRLETKLNKLSK 326 (459)
T ss_pred hHHHHHHhhhhhcccccccccCCceeeeeeecCCCCCCcHHHHHHHHHHhhcCChhHhhhhcchhhHHHHHHhhhhhhhH
Confidence 44678889999999999999999886 22233333334 355544 5788888999999999998
Q ss_pred HHhC
Q 026590 208 AVST 211 (236)
Q Consensus 208 Aar~ 211 (236)
-+++
T Consensus 327 l~~~ 330 (459)
T KOG4519|consen 327 LAKD 330 (459)
T ss_pred hhhh
Confidence 8887
No 20
>PRK14141 heat shock protein GrpE; Provisional
Probab=34.93 E-value=1.8e+02 Score=26.25 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHhCCC----------hhHHHHHHHHHHHHHHHHHhh
Q 026590 188 KQPLTDLANRLFESFEKLEVAVSTKN----------FPQTQSTYADTAVILHEVMDR 234 (236)
Q Consensus 188 KK~l~~LankLF~~le~LD~Aar~Kn----------~~~a~~~Y~~Tv~~LdeVlak 234 (236)
+-....++.+|+.-+|+|+.|...-. ......=++-|...|..||.+
T Consensus 77 ~~a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~l~eGv~mi~k~l~~vLek 133 (209)
T PRK14141 77 AYGIAGFARDMLSVSDNLRRALDAIPAEARAAADAGLKALIEGVEMTERAMLNALER 133 (209)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788999999999999986421 122333445566677777765
No 21
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.91 E-value=2.7e+02 Score=24.41 Aligned_cols=55 Identities=11% Similarity=0.014 Sum_probs=39.1
Q ss_pred cchhhHHHHhhhhcCCChhHHHHHHHHHHHHHHHhh--hhcCCCChHHHHHHhhhcc
Q 026590 115 TGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMA--DLIGPDTLNYVRKYLRLKS 169 (236)
Q Consensus 115 ~gtr~~lkerf~~~~ls~~ea~~RiK~sA~~L~~lk--dLId~~sW~yVr~yLRlka 169 (236)
..||+-+|.-|.-.+++++.++...--+-.-.-+-| +-=.-+.|+-+|.-=++..
T Consensus 5 ~e~R~~~R~~YV~~~~sLe~aA~~~gVs~~TarrWK~~Ak~~GDDWDk~RaA~~lag 61 (165)
T PF08822_consen 5 QETRDAVRRAYVFDRLSLEQAAAKCGVSYATARRWKREAKAKGDDWDKARAAHTLAG 61 (165)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhcc
Confidence 468999998888899999988776655555554444 2335689999987665554
No 22
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=34.21 E-value=33 Score=34.17 Aligned_cols=61 Identities=10% Similarity=0.126 Sum_probs=45.1
Q ss_pred hhHHHHhhhhcC-CChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhh
Q 026590 118 RSFLKKAIYIAN-IGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISA 182 (236)
Q Consensus 118 r~~lkerf~~~~-ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIss 182 (236)
-+|||++|...| ++-+.|+.-|.+.+.-|..=+.||+-++=.-|=-+||++ +|||-+|..-
T Consensus 48 ~~~Lr~Hf~~EGrl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQ----f~DLmKLFEV 109 (517)
T KOG0375|consen 48 HDVLRNHFIKEGRLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQ----FFDLMKLFEV 109 (517)
T ss_pred hHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchH----HHHHHHHHHc
Confidence 578999999966 554444444455555444556899999999999999986 7898888764
No 23
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=33.36 E-value=1.2e+02 Score=24.63 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=33.0
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHh
Q 026590 129 NIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFES 201 (236)
Q Consensus 129 ~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~ 201 (236)
+..+.+....+|+.+.+|... -..++.++-.-+..-|......+...++++|.+
T Consensus 29 ~~~~~~~~~~Lr~~~dele~~-------------------~~~~f~~~~~~l~~~~~~~~~~f~~v~~~lf~d 82 (144)
T cd06845 29 GSPPSEVAETLRRVGDELEEK-------------------HRRLFENMCRQLNISPDNAYEVFQEVARELFED 82 (144)
T ss_pred CCchHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHhCCCcchHHHHHHHHHHHHhcc
Confidence 445678888888888888761 111222222222222444578888889999987
No 24
>PRK14143 heat shock protein GrpE; Provisional
Probab=33.33 E-value=2.5e+02 Score=25.68 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=41.5
Q ss_pred HHhhhcccchhhhHHHHHhhcCCC----CChhHHHHHHHHHHhHHHHHHHHhCCC-----hhHHHHHHHHHHHHHHHHHh
Q 026590 163 KYLRLKSTFMYYDFDNVISAAAPT----DKQPLTDLANRLFESFEKLEVAVSTKN-----FPQTQSTYADTAVILHEVMD 233 (236)
Q Consensus 163 ~yLRlka~~Lr~DL~tlIsskPkd----eKK~l~~LankLF~~le~LD~Aar~Kn-----~~~a~~~Y~~Tv~~LdeVla 233 (236)
.|||+.+ |+.+.-...-++ .+.....++.+|+.-+|+|+.|...-. ...-.+-|+-+.+.|..+|.
T Consensus 89 ~~lR~~A-----dfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~Gve~i~k~l~~~L~ 163 (238)
T PRK14143 89 QYMRIAA-----DFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLYKQLVDVLK 163 (238)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4566655 444444442221 255667788999999999999976321 12334456666777777766
Q ss_pred h
Q 026590 234 R 234 (236)
Q Consensus 234 k 234 (236)
+
T Consensus 164 k 164 (238)
T PRK14143 164 R 164 (238)
T ss_pred H
Confidence 5
No 25
>PF01322 Cytochrom_C_2: Cytochrome C'; InterPro: IPR002321 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class II includes the high-spin cytC' and a number of low-spin cytochromes, e.g. cyt c-556. The haem-attachment site is close to the C terminus. The cytC' are capable of binding such ligands as CO, NO or CN(-), albeit with rate and equilibrium constants 100 to 1,000,000-fold smaller than other high-spin haemoproteins []. This, coupled with its relatively low redox potential, makes it unlikely that cytC' is a terminal oxidase. Thus cytC' probably functions as an electron transfer protein []. The 3D structures of a number of cytC' have been determined. The molecule usually exists as a dimer, each monomer folding as a four-alpha-helix bundle incorporating a covalently-bound haem group at the core []. The Chromatium vinosum cytC' exhibits dimer dissociation upon ligand binding [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0005746 mitochondrial respiratory chain; PDB: 1BBH_A 2J9B_B 2J8W_A 1JAF_B 3ZTM_A 2XLD_A 2XL6_A 1E86_A 2YLD_A 2YKZ_A ....
Probab=32.75 E-value=1e+02 Score=24.13 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=35.8
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHH
Q 026590 187 DKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVI 227 (236)
Q Consensus 187 eKK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~ 227 (236)
+.+.+..++..|-.....|..|++.+|...+...|.+.-..
T Consensus 73 ~~~~F~~~~~~~~~aa~~L~~aa~~~d~~~~~~a~~~v~~~ 113 (122)
T PF01322_consen 73 DPEDFKQLAQAFQKAAAALAAAAKSGDLAAIKAAFGEVGKS 113 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999998876543
No 26
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=31.58 E-value=17 Score=38.61 Aligned_cols=23 Identities=39% Similarity=0.374 Sum_probs=16.8
Q ss_pred Ccccccccccccccchhhhhhcc
Q 026590 1 MIISSKTATLTQNSSSMAHLANL 23 (236)
Q Consensus 1 ~~~~~~~~~~~~~~~~ma~~a~l 23 (236)
+|.|-||.|||||.-++-...-.
T Consensus 350 vICsDKTGTLTqN~M~v~~~~~~ 372 (917)
T COG0474 350 VICSDKTGTLTQNKMTVKKIYIN 372 (917)
T ss_pred EEEecCCCCCccCeEEEEEEEeC
Confidence 47799999999997665444333
No 27
>CHL00102 rps20 ribosomal protein S20
Probab=30.66 E-value=1.1e+02 Score=24.24 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q 026590 189 QPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVM 232 (236)
Q Consensus 189 K~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVl 232 (236)
..++.+.++++..++..|.-...+|..+++..|.++.+.||-..
T Consensus 26 S~~rT~iKk~~~ai~~~~~~~~~~d~~~a~~~l~~a~s~iDkaa 69 (93)
T CHL00102 26 SSVKTLIKKYLKNLEDYKTSPNSNNKKKVQETLSSVYSKIDKAV 69 (93)
T ss_pred HHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444444444666666666666666666544
No 28
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=30.66 E-value=2.1e+02 Score=28.76 Aligned_cols=77 Identities=13% Similarity=0.282 Sum_probs=39.8
Q ss_pred CCCChHHHHHHhhhcccchhhhHHHHHh---h--cCCCCChhHHHHH----HHHHHhHHHHHHHHhCCChhHHHHHHHHH
Q 026590 154 GPDTLNYVRKYLRLKSTFMYYDFDNVIS---A--AAPTDKQPLTDLA----NRLFESFEKLEVAVSTKNFPQTQSTYADT 224 (236)
Q Consensus 154 d~~sW~yVr~yLRlka~~Lr~DL~tlIs---s--kPkdeKK~l~~La----nkLF~~le~LD~Aar~Kn~~~a~~~Y~~T 224 (236)
.++.=.|+.+.--.-++||..+++.|-. . -|++++..|-.|. +|+-+-+|+=-.=++ +..|+|++.++++
T Consensus 53 ~~~~ad~l~~~T~~fa~~i~~~~dri~~wLe~l~~~~~~~dgyaklSD~d~kKvKei~ekAKd~i~-k~LpeAkk~~eEa 131 (436)
T PTZ00208 53 AEERADKLKDRTQNFAGYIEFELDRLDYWLEKLNGPKHSNDGYAKLSDSDTEKVKEIFEKAKDGIA-KQLPEAKKAGEEA 131 (436)
T ss_pred cchhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhcCccccCCcccccCcccHHHHHHHHHHHHHHHH-hhhhhhHHHHHHH
Confidence 3344455555555566667666666621 1 1233333333333 222222222211122 2688889999888
Q ss_pred HHHHHHH
Q 026590 225 AVILHEV 231 (236)
Q Consensus 225 v~~LdeV 231 (236)
-...++|
T Consensus 132 ek~~~~V 138 (436)
T PTZ00208 132 EKLHQEV 138 (436)
T ss_pred HHHHHHH
Confidence 8888777
No 29
>PRK14150 heat shock protein GrpE; Provisional
Probab=28.73 E-value=4e+02 Score=23.43 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=41.0
Q ss_pred HHHHhhhcccchhhhHHHHHhhcCCC----CChhHHHHHHHHHHhHHHHHHHHhCCCh--hH---HHHHHHHHHHHHHHH
Q 026590 161 VRKYLRLKSTFMYYDFDNVISAAAPT----DKQPLTDLANRLFESFEKLEVAVSTKNF--PQ---TQSTYADTAVILHEV 231 (236)
Q Consensus 161 Vr~yLRlka~~Lr~DL~tlIsskPkd----eKK~l~~LankLF~~le~LD~Aar~Kn~--~~---a~~~Y~~Tv~~LdeV 231 (236)
--.|||+.+ |+.+.-...-++ .+-....++.+|+.-+|+|+.|....+. .. -..=++-+...|..+
T Consensus 58 kd~~lR~~A-----efeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~~~~~~~~~~~Gv~mi~~~l~~~ 132 (193)
T PRK14150 58 RDSVLRARA-----EVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADKENEALKALIEGVELTLKSLLDT 132 (193)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 345666666 555554443222 1445667889999999999999864321 22 223344555666666
Q ss_pred Hhh
Q 026590 232 MDR 234 (236)
Q Consensus 232 lak 234 (236)
|.+
T Consensus 133 L~~ 135 (193)
T PRK14150 133 VAK 135 (193)
T ss_pred HHH
Confidence 654
No 30
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=28.09 E-value=24 Score=30.09 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=11.4
Q ss_pred ccCCceecCCCCCCcc
Q 026590 91 EDNGLWVTGPLPVPPV 106 (236)
Q Consensus 91 ~~~~~~~~~p~P~ps~ 106 (236)
..+++| -|||||++-
T Consensus 11 ~~~~~~-~g~pppq~~ 25 (138)
T PF03954_consen 11 REQQFR-KGPPPPQSL 25 (138)
T ss_pred cccccc-CCCCCChHH
Confidence 356888 899888773
No 31
>PLN03190 aminophospholipid translocase; Provisional
Probab=28.03 E-value=22 Score=39.09 Aligned_cols=15 Identities=47% Similarity=0.587 Sum_probs=13.1
Q ss_pred cccccccccccccch
Q 026590 2 IISSKTATLTQNSSS 16 (236)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (236)
|.|.||.|||||.-.
T Consensus 456 IfSDKTGTLT~N~M~ 470 (1178)
T PLN03190 456 VFSDKTGTLTENKME 470 (1178)
T ss_pred EEEcCCCccccceEE
Confidence 689999999999655
No 32
>PRK14154 heat shock protein GrpE; Provisional
Probab=27.90 E-value=2.9e+02 Score=24.95 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=29.9
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHhCC--Chh---HHHHHHHHHHHHHHHHHhh
Q 026590 188 KQPLTDLANRLFESFEKLEVAVSTK--NFP---QTQSTYADTAVILHEVMDR 234 (236)
Q Consensus 188 KK~l~~LankLF~~le~LD~Aar~K--n~~---~a~~~Y~~Tv~~LdeVlak 234 (236)
+-....++.+|+.-+|+|+.|...- ..+ ....=++-+...|..||.+
T Consensus 98 ~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvemi~k~l~~vL~k 149 (208)
T PRK14154 98 KFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLAK 149 (208)
T ss_pred HHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677899999999999998742 112 2223334455566666654
No 33
>PRK14160 heat shock protein GrpE; Provisional
Probab=27.55 E-value=3.8e+02 Score=24.22 Aligned_cols=48 Identities=13% Similarity=0.229 Sum_probs=33.8
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHhC-CChhHHHHHHHHHHHHHHHHHhhc
Q 026590 188 KQPLTDLANRLFESFEKLEVAVST-KNFPQTQSTYADTAVILHEVMDRM 235 (236)
Q Consensus 188 KK~l~~LankLF~~le~LD~Aar~-Kn~~~a~~~Y~~Tv~~LdeVlaki 235 (236)
+-...++.++|+.-+|+|+.|... ++...-..-++-|.+.|..||.+.
T Consensus 107 ~~a~e~~~~~LLpVlDnLerAl~~~~~~~~l~~Gv~mi~kql~~vL~k~ 155 (211)
T PRK14160 107 SDACEDVLKELLPVLDNLERAAAVEGSVEDLKKGIEMTVKQFKTSLEKL 155 (211)
T ss_pred HHHHHHHHHHHhhHHhHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHC
Confidence 556778899999999999999875 233334445556666777777653
No 34
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=27.50 E-value=73 Score=26.00 Aligned_cols=29 Identities=7% Similarity=0.024 Sum_probs=23.3
Q ss_pred hHHHHhhhhc-CCChhHHHHHHHHHHHHHH
Q 026590 119 SFLKKAIYIA-NIGTKGRIHRLKRYAFDLL 147 (236)
Q Consensus 119 ~~lkerf~~~-~ls~~ea~~RiK~sA~~L~ 147 (236)
++|+|.|-.| ++++.+.+..+--++..+.
T Consensus 12 EiL~eeflep~glt~~~lA~~lgV~r~~is 41 (104)
T COG3093 12 EILREEFLEPLGLTQTELAEALGVTRNTIS 41 (104)
T ss_pred HHHHHHHhccccCCHHHHHHHhCCCHHHHH
Confidence 6899999998 9999988887766555543
No 35
>PF14227 UBN2_2: gag-polypeptide of LTR copia-type
Probab=26.84 E-value=1.3e+02 Score=23.00 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=33.0
Q ss_pred cchhhHHHHhhhh----cCCChhHHHHHHHHHHHHHHHhhhhcCC
Q 026590 115 TGTRSFLKKAIYI----ANIGTKGRIHRLKRYAFDLLAMADLIGP 155 (236)
Q Consensus 115 ~gtr~~lkerf~~----~~ls~~ea~~RiK~sA~~L~~lkdLId~ 155 (236)
...+-+++..||. ++-++.+.+.+++..+.+|..++.-|++
T Consensus 20 ~~~~~~l~~kl~~~k~~~~~~v~~hi~~~~~l~~~L~~~g~~i~d 64 (119)
T PF14227_consen 20 FANKIYLLRKLYSLKMDEGGSVRDHINEFRSLVNQLKSLGVPIDD 64 (119)
T ss_pred HHHHHHHHHHHHHhHhccchhHHHHHHHHHHHHHhhccccccchH
Confidence 4457778999886 5667899999999999999998865544
No 36
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=25.81 E-value=1.6e+02 Score=23.52 Aligned_cols=30 Identities=3% Similarity=-0.001 Sum_probs=16.2
Q ss_pred HHHhhhhcCCChhHHHHHHHHHHHHHHHhh
Q 026590 121 LKKAIYIANIGTKGRIHRLKRYAFDLLAMA 150 (236)
Q Consensus 121 lkerf~~~~ls~~ea~~RiK~sA~~L~~lk 150 (236)
||+.--..+++.++-+.++--+..-+..++
T Consensus 10 lk~~R~~~gltq~~lA~~~gvs~~~is~~E 39 (135)
T PRK09706 10 IRYRRKQLKLSQRSLAKAVKVSHVSISQWE 39 (135)
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 333333356666666666665555555544
No 37
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=25.66 E-value=4.7e+02 Score=26.20 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=26.0
Q ss_pred HHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q 026590 198 LFESFEKLEVAVSTKNFPQTQSTYADTAVILHEV 231 (236)
Q Consensus 198 LF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeV 231 (236)
+=+.+++++.|...++...|-...+++...|+++
T Consensus 108 i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l 141 (593)
T PF06248_consen 108 IDELLEEVEEALKEGNYLDAADLLEELKSLLDDL 141 (593)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 3445566777888888888888888888888775
No 38
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=25.39 E-value=2.5e+02 Score=29.26 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=11.1
Q ss_pred eeeeeeeeecccccchhh-hhhhhH
Q 026590 46 AKIIGLLGHKAENFQDQA-QITRRV 69 (236)
Q Consensus 46 ~~~~g~~~~~~~~~~~~~-~~~RR~ 69 (236)
++.+|-+--....++++. +.+||-
T Consensus 387 IT~i~aVs~~ggD~sePVt~~t~~i 411 (591)
T TIGR01042 387 VSIVGAVSPPGGDFSDPVTSATLGI 411 (591)
T ss_pred EEEEEEEECCCCCCCCchHHHHHHH
Confidence 444443333333355554 556655
No 39
>COG5377 Phage-related protein, predicted endonuclease [DNA replication, recombination, and repair]
Probab=25.38 E-value=1.4e+02 Score=28.53 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=32.6
Q ss_pred cCCCCCCccCCcccccCcchhhHHHHhhhhcCC------C--hhHHHHHHHHHHHHHHHhhhhc
Q 026590 98 TGPLPVPPVYNNIANEKTGTRSFLKKAIYIANI------G--TKGRIHRLKRYAFDLLAMADLI 153 (236)
Q Consensus 98 ~~p~P~ps~~n~~~~~~~gtr~~lkerf~~~~l------s--~~ea~~RiK~sA~~L~~lkdLI 153 (236)
.||||||--+ ..-.--|+++||-..+. + -.|+.++.-+--.+|+.++++-
T Consensus 194 ~~~~pPaldg------ssaaEk~la~r~A~t~~~k~v~L~~~~~e~La~l~~ikrdi~~~e~~a 251 (319)
T COG5377 194 LGPVPPALDG------SSAAEKYLALRYAKTEAVKTVDLPHFYAEALAVLHSIKRDISELEDFA 251 (319)
T ss_pred ccCCCCCccc------cccHHHHHHHHHHhhcccceecccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777776542 24456689999987554 1 2477777777777777776653
No 40
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=25.04 E-value=1.2e+02 Score=28.67 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=51.8
Q ss_pred HHHhhhhcCCChhHHHHHHHHHHHHHHHhh-hhcCCCC-hHHHHHHhhhcccchhhhHHHHHhhcC
Q 026590 121 LKKAIYIANIGTKGRIHRLKRYAFDLLAMA-DLIGPDT-LNYVRKYLRLKSTFMYYDFDNVISAAA 184 (236)
Q Consensus 121 lkerf~~~~ls~~ea~~RiK~sA~~L~~lk-dLId~~s-W~yVr~yLRlka~~Lr~DL~tlIsskP 184 (236)
||+.-=..+++.++.+.|++-+..-|..++ +-.+..- =.|+|-|||.-+.||..|.+.|+....
T Consensus 19 Lr~aRe~~GlSq~~vA~~l~l~~~~I~~iE~g~~~~~~~~tf~RGyir~yA~~lgv~~~~L~~~~~ 84 (331)
T PRK10856 19 LRQAREQLGLTQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLE 84 (331)
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHCcCHHHHHHhhh
Confidence 666666789999999999998888888888 3333333 459999999999999999999987643
No 41
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=25.02 E-value=77 Score=23.51 Aligned_cols=9 Identities=44% Similarity=0.394 Sum_probs=6.6
Q ss_pred hhhhhhHHH
Q 026590 63 AQITRRVSL 71 (236)
Q Consensus 63 ~~~~RR~~l 71 (236)
+..+||-+|
T Consensus 7 ~~~sRR~Fl 15 (66)
T TIGR02811 7 ADPSRRDLL 15 (66)
T ss_pred CCccHHHHH
Confidence 356899976
No 42
>PRK05685 fliS flagellar protein FliS; Validated
Probab=24.05 E-value=2.6e+02 Score=22.83 Aligned_cols=63 Identities=10% Similarity=0.220 Sum_probs=49.5
Q ss_pred chhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhc
Q 026590 171 FMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRM 235 (236)
Q Consensus 171 ~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlaki 235 (236)
|...++.+=+.+.++. +-..-|+..++.+++.-..|...++.++....-.++...|.+..+-+
T Consensus 10 Y~~~~~~~~v~tasp~--~Li~mLydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sL 72 (132)
T PRK05685 10 YQQVSVESQVSSASPH--KLIQMLYEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSL 72 (132)
T ss_pred HHhccchhhhhcCCHH--HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444554444444443 57788899999999999999999999999999999999998886543
No 43
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=23.59 E-value=2.6e+02 Score=19.40 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhhc---CCCChHHHHHHhhh
Q 026590 140 KRYAFDLLAMADLI---GPDTLNYVRKYLRL 167 (236)
Q Consensus 140 K~sA~~L~~lkdLI---d~~sW~yVr~yLRl 167 (236)
.+..+.+..|+..+ +...|+.++..+|.
T Consensus 8 ~~~~~~~~~l~~~~~~~~~~d~~~l~~~~H~ 38 (90)
T PF01627_consen 8 EEAPEDLEQLEQALQALEQEDWEELRRLAHR 38 (90)
T ss_dssp HHHHHHHHHHHHHHCSSHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence 45666777888877 67889998888764
No 44
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=23.50 E-value=29 Score=37.25 Aligned_cols=19 Identities=47% Similarity=0.469 Sum_probs=15.6
Q ss_pred cccccccccccccchhhhh
Q 026590 2 IISSKTATLTQNSSSMAHL 20 (236)
Q Consensus 2 ~~~~~~~~~~~~~~~ma~~ 20 (236)
|.|.||.|||||.-+.-.+
T Consensus 362 I~sDKTGTLT~N~M~~~~~ 380 (1057)
T TIGR01652 362 IFSDKTGTLTQNIMEFKKC 380 (1057)
T ss_pred EEEcCCCceeeeeEEEEEE
Confidence 6799999999998775544
No 45
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=23.49 E-value=1.5e+02 Score=21.70 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=20.9
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q 026590 188 KQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVM 232 (236)
Q Consensus 188 KK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVl 232 (236)
|+.+++-++++-++++++=.-++++=..+++...++.....+|++
T Consensus 28 R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~e~~ 72 (74)
T PF12732_consen 28 REKLKDKAEDLKDKAKDLYEEAKEKVKEKAEETADEAKEKAKELK 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555444444322223333333444444443
No 46
>COG5057 LAG1 Phosphotyrosyl phosphatase activator [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=23.44 E-value=90 Score=30.20 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=15.5
Q ss_pred HHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhh
Q 026590 197 RLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDR 234 (236)
Q Consensus 197 kLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlak 234 (236)
.+++.+-+||.+++.++.++...-|...+..+..||++
T Consensus 33 ri~~fi~~l~~sik~~~~~d~~~~~Sssv~~m~~vL~r 70 (353)
T COG5057 33 RIYNFILDLDESIKGCSDSDYHSEQSSSVNHMMNVLDR 70 (353)
T ss_pred HHHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHHHH
Confidence 34444444444444444443333333334444433333
No 47
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=23.42 E-value=2.3e+02 Score=22.22 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q 026590 191 LTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVM 232 (236)
Q Consensus 191 l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVl 232 (236)
+...+.++-+.++.++.++...|..+|++.+++....-+..-
T Consensus 21 l~~~~~~i~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~ 62 (121)
T PF14276_consen 21 LNNSTDSIEEQLEQIEEAIENEDWEKAYKETEELEKEWDKNK 62 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 344567777888888888888888888888888877766553
No 48
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=23.23 E-value=1.9e+02 Score=24.89 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=30.7
Q ss_pred cchhhHHHHhhhh--cCCChhHHHHHHHHHHHHHHHh
Q 026590 115 TGTRSFLKKAIYI--ANIGTKGRIHRLKRYAFDLLAM 149 (236)
Q Consensus 115 ~gtr~~lkerf~~--~~ls~~ea~~RiK~sA~~L~~l 149 (236)
|-+=--|=..||. ++.+.+|+..+++++-.+|..+
T Consensus 82 Wn~lg~Ln~~f~~~y~~~sl~e~~~~l~~s~~~v~~l 118 (166)
T PF08020_consen 82 WNQLGELNQSFYEKYQDTSLEELKALLKESHQKVIAL 118 (166)
T ss_pred hhhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 6666668889998 8999999999999999999864
No 49
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=22.73 E-value=1.2e+02 Score=23.05 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=18.6
Q ss_pred cee-cCCCCCCccCCcccccCcchhhHHHHhhhhcCCC
Q 026590 95 LWV-TGPLPVPPVYNNIANEKTGTRSFLKKAIYIANIG 131 (236)
Q Consensus 95 ~~~-~~p~P~ps~~n~~~~~~~gtr~~lkerf~~~~ls 131 (236)
.|+ +-|-|.+.. ...+.+---||+||=.+..
T Consensus 21 twviVq~~~a~~p------~s~eeQr~~re~ff~~~~~ 52 (66)
T PF10907_consen 21 TWVIVQPRPAGNP------ASSEEQRAHREKFFGGDKD 52 (66)
T ss_pred EEEEECCCCCCCC------CChHHHHHHHHHHcCCCCC
Confidence 564 655533332 4456666778999975544
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.62 E-value=1.2e+02 Score=25.52 Aligned_cols=27 Identities=4% Similarity=0.350 Sum_probs=21.6
Q ss_pred hHHHHHhhcCCCCChhHHHHHHHHHHh
Q 026590 175 DFDNVISAAAPTDKQPLTDLANRLFES 201 (236)
Q Consensus 175 DL~tlIsskPkdeKK~l~~LankLF~~ 201 (236)
.|+.-.+.+|++||++..+=+++.|++
T Consensus 9 ~L~~~L~~lp~~e~~e~l~~Y~e~f~d 35 (181)
T PF08006_consen 9 ELEKYLKKLPEEEREEILEYYEEYFDD 35 (181)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345555668999999999999999987
No 51
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=20.82 E-value=4.2e+02 Score=20.74 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=49.0
Q ss_pred HHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHH
Q 026590 146 LLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTA 225 (236)
Q Consensus 146 L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv 225 (236)
+..++..|+++.|...++.+..=...-.. .....+-. -+..+. ..+=.++.+|..++..+|.+++...-....
T Consensus 32 l~~i~~~i~~~dW~~A~~~~~~l~~~W~k-~~~~~~~~--~~h~ei----d~i~~sl~rl~~~i~~~dk~~~l~el~~lk 104 (121)
T PF14276_consen 32 LEQIEEAIENEDWEKAYKETEELEKEWDK-NKKRWSIL--IEHQEI----DNIDISLARLKGYIEAKDKSESLAELAELK 104 (121)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHh-hchheeee--ecHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45677888999999887765321111110 11111110 123333 445667889999999999999888877777
Q ss_pred HHHHHHH
Q 026590 226 VILHEVM 232 (236)
Q Consensus 226 ~~LdeVl 232 (236)
..++.+.
T Consensus 105 ~~i~~i~ 111 (121)
T PF14276_consen 105 ELIEHIP 111 (121)
T ss_pred HHHHHHH
Confidence 7666654
No 52
>PRK14145 heat shock protein GrpE; Provisional
Probab=20.76 E-value=3e+02 Score=24.53 Aligned_cols=47 Identities=9% Similarity=0.191 Sum_probs=33.0
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHHHhh
Q 026590 188 KQPLTDLANRLFESFEKLEVAVSTK-NFPQTQSTYADTAVILHEVMDR 234 (236)
Q Consensus 188 KK~l~~LankLF~~le~LD~Aar~K-n~~~a~~~Y~~Tv~~LdeVlak 234 (236)
+-....++.+|+.-+|+|+.|.... +......-.+-|.+.|..||.+
T Consensus 91 ~~a~e~~~~~LLpV~DnLerAl~~~~~~~~l~~Gv~mi~k~l~~vL~k 138 (196)
T PRK14145 91 EYGKEQVILELLPVMDNFERALASSGDYNSLKEGIELIYRQFKKILDK 138 (196)
T ss_pred HHHHHHHHHHHHhHHhHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788999999999999998762 2222334556666677777665
No 53
>PRK14142 heat shock protein GrpE; Provisional
Probab=20.31 E-value=1.6e+02 Score=27.01 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=31.2
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhh
Q 026590 188 KQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDR 234 (236)
Q Consensus 188 KK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlak 234 (236)
+-...+++.+|+.-+|+|+.|....+... .-+..+.+.|..+|.+
T Consensus 79 ~~A~e~~~kdLLpVlDnLERAL~~~~~~~--~~v~~I~kqL~~iLek 123 (223)
T PRK14142 79 DRAKASVVSQLLGVLDDLERARKHGDLES--GPLKSVADKLDSALTG 123 (223)
T ss_pred HHHHHHHHHHHhchHhHHHHHHhcccccc--HHHHHHHHHHHHHHHH
Confidence 45567889999999999999997543321 1245566666666655
No 54
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=20.21 E-value=30 Score=37.49 Aligned_cols=30 Identities=47% Similarity=0.407 Sum_probs=23.8
Q ss_pred cccccccccccccchhhhhhcccCccCCCC
Q 026590 2 IISSKTATLTQNSSSMAHLANLNGVSETLP 31 (236)
Q Consensus 2 ~~~~~~~~~~~~~~~ma~~a~l~g~s~~~~ 31 (236)
|.|-||+|||||--+.|||=-=++.-.+.+
T Consensus 369 I~SDktGTlTqnrMtVahlw~d~~i~~~d~ 398 (1019)
T KOG0203|consen 369 ICSDKTGTLTQNRMTVAHLWFDNQIHEADT 398 (1019)
T ss_pred EeecceeeEEecceEEEeeccCCceeeeec
Confidence 678999999999999999976555544444
No 55
>PRK14164 heat shock protein GrpE; Provisional
Probab=20.15 E-value=3.9e+02 Score=24.22 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=30.6
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhh
Q 026590 188 KQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDR 234 (236)
Q Consensus 188 KK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlak 234 (236)
+-....++++|+.-+|+|+.|....+..+. -+..+...|..||.+
T Consensus 116 ~~a~~~~~~~LLpVlDnLerAl~~~~~~~g--~l~~i~~~l~~vL~k 160 (218)
T PRK14164 116 ETAKAGVATDLLPILDDLDLAEQHGDLNEG--PLKAFSDKLTNVLAG 160 (218)
T ss_pred HHHHHHHHHHHhhHHhHHHHHHhccccccc--HHHHHHHHHHHHHHH
Confidence 456677889999999999999876544221 133455566666654
Done!