Query 026590
Match_columns 236
No_of_seqs 94 out of 96
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 17:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyk_A Oxygen-evolving enhance 100.0 3.4E-52 1.2E-56 347.3 10.2 144 92-236 2-149 (149)
2 3zsu_A TLL2057 protein, cyanoq 99.9 2.3E-22 7.9E-27 164.6 10.1 103 134-236 25-127 (130)
3 3ls0_A SLL1638 protein, PSBQ; 99.9 4.2E-22 1.4E-26 163.6 9.7 103 134-236 27-130 (133)
4 3rfy_A Peptidyl-prolyl CIS-tra 95.3 0.026 8.9E-07 52.7 6.3 118 108-232 26-146 (369)
5 3us6_A Histidine-containing ph 77.3 16 0.00055 29.3 9.1 87 148-234 29-129 (153)
6 2js5_A Uncharacterized protein 56.3 16 0.00054 27.0 4.4 45 164-209 14-58 (71)
7 3csx_A Putative uncharacterize 53.7 18 0.00063 27.2 4.6 45 164-209 26-70 (81)
8 1yvi_A Histidine-containing ph 49.5 86 0.003 24.5 8.2 40 195-234 91-130 (149)
9 3r6n_A Desmoplakin; spectrin r 42.7 29 0.001 32.7 5.1 106 126-234 334-448 (450)
10 1wfd_A Hypothetical protein 15 41.8 59 0.002 24.0 5.8 44 187-233 7-50 (93)
11 2w6b_A RHO guanine nucleotide 40.8 5 0.00017 28.4 -0.3 51 152-202 2-54 (56)
12 3fyq_A CG6831-PA (talin); 5-he 31.2 1.6E+02 0.0056 25.3 7.5 73 155-228 39-117 (199)
13 1yke_B RNA polymerase II holoe 30.7 2.1E+02 0.0073 23.1 8.2 35 130-187 50-84 (151)
14 1ykh_B RNA polymerase II holoe 25.6 2.4E+02 0.0084 22.1 8.3 35 130-187 50-84 (132)
15 4a1q_A ORF E73; viral protein, 24.6 65 0.0022 23.3 3.3 41 160-200 19-71 (73)
16 2j0o_A Invasin IPAD; type III 22.0 1.3E+02 0.0045 27.6 5.6 75 161-236 81-161 (318)
17 1sr2_A Putative sensor-like hi 20.2 2.2E+02 0.0077 21.5 5.8 73 141-231 43-115 (116)
No 1
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=100.00 E-value=3.4e-52 Score=347.30 Aligned_cols=144 Identities=23% Similarity=0.374 Sum_probs=124.6
Q ss_pred cCCceecCCCCCCccCCcccccCcchhhH---H-HHhhhhcCCChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhh
Q 026590 92 DNGLWVTGPLPVPPVYNNIANEKTGTRSF---L-KKAIYIANIGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRL 167 (236)
Q Consensus 92 ~~~~~~~~p~P~ps~~n~~~~~~~gtr~~---l-kerf~~~~ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRl 167 (236)
+.+|+ +||||||||+.+|++...+.|+| + |||||+|++||+||++|||++|++|++|++||++++|+|||+|||+
T Consensus 2 ~~~~~-~~~~~~~~~~~~g~~~~~~ard~~l~~~k~~f~~~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~ 80 (149)
T 1vyk_A 2 ARPIV-VGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRL 80 (149)
T ss_dssp CSCEE-CCCCCCC--------------------CTTCCEECCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHH
T ss_pred CCCCc-CCCCCCCCCCCCCcccchhhhccCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 56788 99999999999999999999999 7 9999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhcC
Q 026590 168 KSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDRMA 236 (236)
Q Consensus 168 ka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlaki~ 236 (236)
|++||||||++||++||+++|+++++||++||++|++||+|||.||.+++++||++|+++||+||++|+
T Consensus 81 ~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~~~ld~vl~~l~ 149 (149)
T 1vyk_A 81 RASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG 149 (149)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999986
No 2
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=99.87 E-value=2.3e-22 Score=164.60 Aligned_cols=103 Identities=12% Similarity=0.173 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCCC
Q 026590 134 GRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKN 213 (236)
Q Consensus 134 ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~Kn 213 (236)
.=+.+|.+.+++|.+|+.||++++|.+||++||++.|.||+||++|..+|++.+||++++|+++||++|++||.|++.+|
T Consensus 25 ~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n 104 (130)
T 3zsu_A 25 DYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDS 104 (130)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678888888999999999999999999999999999999999999997655699999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcC
Q 026590 214 FPQTQSTYADTAVILHEVMDRMA 236 (236)
Q Consensus 214 ~~~a~~~Y~~Tv~~LdeVlaki~ 236 (236)
...+++.|++++++||..+.-|+
T Consensus 105 ~~~a~k~Y~~a~adfdafl~liP 127 (130)
T 3zsu_A 105 VTVAQEGFREAEADFKAYLNSLP 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999987663
No 3
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=99.87 E-value=4.2e-22 Score=163.60 Aligned_cols=103 Identities=16% Similarity=0.224 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHH-hhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCC
Q 026590 134 GRIHRLKRYAFDLLA-MADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTK 212 (236)
Q Consensus 134 ea~~RiK~sA~~L~~-lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~K 212 (236)
.=+.+|.+.+++|.+ |+.||++++|.+||+|||++.|.||+||++|..+|++.+||++++|+++||++|++||.|++.+
T Consensus 27 ~y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~ 106 (133)
T 3ls0_A 27 VYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888999999 9999999999999999999999999999999999654459999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhcC
Q 026590 213 NFPQTQSTYADTAVILHEVMDRMA 236 (236)
Q Consensus 213 n~~~a~~~Y~~Tv~~LdeVlaki~ 236 (236)
|...+++.|++++++||..+.-|+
T Consensus 107 n~~~a~k~Y~~a~adfdafl~liP 130 (133)
T 3ls0_A 107 NGSQAKIQYQEALADFDSFLNLLP 130 (133)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999987663
No 4
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=95.28 E-value=0.026 Score=52.73 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=93.3
Q ss_pred CcccccCcchhhHHHHhhhhcCCChhHHHHHHHHHHHHHHHhhhhcC---CCChHHHHHHhhhcccchhhhHHHHHhhcC
Q 026590 108 NNIANEKTGTRSFLKKAIYIANIGTKGRIHRLKRYAFDLLAMADLIG---PDTLNYVRKYLRLKSTFMYYDFDNVISAAA 184 (236)
Q Consensus 108 n~~~~~~~gtr~~lkerf~~~~ls~~ea~~RiK~sA~~L~~lkdLId---~~sW~yVr~yLRlka~~Lr~DL~tlIsskP 184 (236)
++..|.-++.+..||..+=+-... ||+--+.|..+-+++. .+.|.-+.++++.-+.-|..+=+.|+.+.|
T Consensus 26 l~~g~~~~~~~a~lr~alp~~~~~-------~~~~q~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~ 98 (369)
T 3rfy_A 26 LISGPPIKDPEALLRYALPIDNKA-------IREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFA 98 (369)
T ss_dssp EEESTTSCCHHHHHHHHSCCCCHH-------HHHHHHHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCC
T ss_pred cCCCCCCCCHHHHHhhhcCCCChh-------HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHhhcC
Confidence 333445566777888776553332 2333333444555554 499999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q 026590 185 PTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVM 232 (236)
Q Consensus 185 kdeKK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVl 232 (236)
.+.|.+..+|.++|=..|++|..++..||........++++..+.++=
T Consensus 99 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~l~~v~~le 146 (369)
T 3rfy_A 99 ESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIE 146 (369)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHCCCSSCCCSSSGGGHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888888877763
No 5
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=77.31 E-value=16 Score=29.26 Aligned_cols=87 Identities=10% Similarity=0.036 Sum_probs=54.3
Q ss_pred HhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCC--CChhHHHHH------------HHHHHhHHHHHHHHhCCC
Q 026590 148 AMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPT--DKQPLTDLA------------NRLFESFEKLEVAVSTKN 213 (236)
Q Consensus 148 ~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkd--eKK~l~~La------------nkLF~~le~LD~Aar~Kn 213 (236)
.|++|.++..-..++..|..=......++..+-.++... +-+.+..++ .+|.+--.+|..+++.++
T Consensus 29 qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGa~~l~~~c~~lE~~~~~~~ 108 (153)
T 3us6_A 29 QLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQN 108 (153)
T ss_dssp HHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHcCC
Confidence 344444444444555555544444444555555554332 244444433 567778888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 026590 214 FPQTQSTYADTAVILHEVMDR 234 (236)
Q Consensus 214 ~~~a~~~Y~~Tv~~LdeVlak 234 (236)
...+...+++....+..|...
T Consensus 109 ~~~~~~~l~~l~~e~~~v~~~ 129 (153)
T 3us6_A 109 IDACRRCLQQVKQEYLLVKNK 129 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888887777654
No 6
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=56.32 E-value=16 Score=26.95 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=40.7
Q ss_pred HhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHH
Q 026590 164 YLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAV 209 (236)
Q Consensus 164 yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aa 209 (236)
-|..+++.+.-||-.|.--+|-+ -+.+-++|.+.|+.+.+||.|=
T Consensus 14 KL~~~A~q~kmdLHDLaEdLP~~-w~~i~~vA~~tyda~~~l~~ak 58 (71)
T 2js5_A 14 KLNAQATALKMDLHDLAEDLPTG-WNRIMEVAEKTYEAYRQLDEFR 58 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTS-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhccchhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 36778999999999999999998 9999999999999999999863
No 7
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=53.72 E-value=18 Score=27.18 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=40.6
Q ss_pred HhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHH
Q 026590 164 YLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAV 209 (236)
Q Consensus 164 yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aa 209 (236)
-|..+++.+.-||-.|.--+|-+ -+.+-++|.+.|+-+.+||.|=
T Consensus 26 KL~~~A~q~kmdLHDLaEdLP~~-w~~i~~vA~~tyda~~~l~~ak 70 (81)
T 3csx_A 26 KLNSKAGQMKMDLHDLAEGLPTD-YENLVETAEKTYEIFRELDQLK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTT-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999998 9999999999999999999863
No 8
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=49.48 E-value=86 Score=24.45 Aligned_cols=40 Identities=8% Similarity=-0.030 Sum_probs=30.7
Q ss_pred HHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhh
Q 026590 195 ANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDR 234 (236)
Q Consensus 195 ankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlak 234 (236)
+.+|.+--.+|..+++.++...+...|++....++.|...
T Consensus 91 a~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~ 130 (149)
T 1yvi_A 91 AQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNK 130 (149)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788899999999888887777777777766554
No 9
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=42.67 E-value=29 Score=32.65 Aligned_cols=106 Identities=11% Similarity=0.100 Sum_probs=57.5
Q ss_pred hhcCCChh--HHHHHHHHHHHHHHHhhhh--c---CCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHH
Q 026590 126 YIANIGTK--GRIHRLKRYAFDLLAMADL--I---GPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRL 198 (236)
Q Consensus 126 ~~~~ls~~--ea~~RiK~sA~~L~~lkdL--I---d~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankL 198 (236)
-+||-.|+ +.+.|+.+.-+.+.++=.- | .--+|.|..++|+.=.+. ++.++-+-.|.+.++-++.|-..+
T Consensus 334 ~ipppd~eai~~a~~l~~~~~~~~~lw~~~~~~~~~~~~~~~~~~d~~~i~~w---~~~~~~~~~~~~~~~~~~~l~~~~ 410 (450)
T 3r6n_A 334 IIPPPNPLAVDLSCKIEQYYEAILALWNQLYINMKSLVSWHYCMIDIEKIRAM---TIAKLKTMRQEDYMKTIADLELHY 410 (450)
T ss_dssp ECCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CHHHHTTSCTTTHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33555554 5566777777766654211 1 234677777777654443 233333335666688888887776
Q ss_pred HHhHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHHhh
Q 026590 199 FESFEKLEVAVS--TKNFPQTQSTYADTAVILHEVMDR 234 (236)
Q Consensus 199 F~~le~LD~Aar--~Kn~~~a~~~Y~~Tv~~LdeVlak 234 (236)
=+.+.+.+..-- ..+--+.+..|..+..-+++.+-.
T Consensus 411 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (450)
T 3r6n_A 411 QEFIRNSQGSEMFGDDDKRKIQSQFTDAQKHYQTLVIQ 448 (450)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCccccCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666543220 012234455555555555555443
No 10
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=41.80 E-value=59 Score=24.01 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=37.2
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHh
Q 026590 187 DKQPLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMD 233 (236)
Q Consensus 187 eKK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVla 233 (236)
-|+.+.+-|..|+..=.+.|.+ ++..+|..+|.+++..|-.++-
T Consensus 7 ~~~~~l~~Ai~lv~~Ave~D~~---g~y~eAl~~Y~~Aie~l~~alk 50 (93)
T 1wfd_A 7 GQDSDSTAAVAVLKRAVELDAE---SRYQQALVCYQEGIDMLLQVLK 50 (93)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888887888876 9999999999999999887763
No 11
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.77 E-value=5 Score=28.45 Aligned_cols=51 Identities=12% Similarity=0.170 Sum_probs=37.8
Q ss_pred hcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCC--ChhHHHHHHHHHHhH
Q 026590 152 LIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTD--KQPLTDLANRLFESF 202 (236)
Q Consensus 152 LId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkde--KK~l~~LankLF~~l 202 (236)
.|++++..++--.||-....|++|.+.+-.++..++ |+.|..+-.++..++
T Consensus 2 ~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 2 PLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 366777888888899999999999999999987664 666666666665544
No 12
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=31.15 E-value=1.6e+02 Score=25.30 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=59.8
Q ss_pred CCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCC------ChhHHHHHHHHHHHHH
Q 026590 155 PDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTK------NFPQTQSTYADTAVIL 228 (236)
Q Consensus 155 ~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~K------n~~~a~~~Y~~Tv~~L 228 (236)
..+....|..|-..+.-|--|.+.|+++--+. +..|-..+++.+..+++|=+++|.. +.|++|...=..++++
T Consensus 39 ~~~F~~~qe~Ilk~Ak~Lvedtk~LV~~a~~t-Qe~LA~aa~~~v~~i~~La~~vK~gAAsl~s~dp~tQv~LLna~kdV 117 (199)
T 3fyq_A 39 DGSFADHREHILQTAKALVEDTKVLVTGAAGT-QDQLANAAQNAVSTITQLAEAVKRGACSLGSTQPDSQVMVINAVKDV 117 (199)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 36788899999999999999999999997555 8899999999999999999988865 6788887665555544
No 13
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=30.69 E-value=2.1e+02 Score=23.10 Aligned_cols=35 Identities=9% Similarity=0.184 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCC
Q 026590 130 IGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTD 187 (236)
Q Consensus 130 ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkde 187 (236)
.++++-...+++.|.+|..- -+|++.||+++|..+
T Consensus 50 ~~~~~f~~~~~ela~dli~k-----------------------akqIe~LIdsLPg~~ 84 (151)
T 1yke_B 50 VPPEEFSNTIDELSTDIILK-----------------------TRQINKLIDSLPGVD 84 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHCTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHhCCCCC
Confidence 45678889999999988751 358899999999765
No 14
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.60 E-value=2.4e+02 Score=22.09 Aligned_cols=35 Identities=9% Similarity=0.184 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCC
Q 026590 130 IGTKGRIHRLKRYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTD 187 (236)
Q Consensus 130 ls~~ea~~RiK~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkde 187 (236)
.++++-...+++.|.+|..- -+|++.||+++|..+
T Consensus 50 ~~~~~f~~~~~ela~dli~k-----------------------~kqIe~LIdsLP~~~ 84 (132)
T 1ykh_B 50 VPPEEFSNTIDELSTDIILK-----------------------TRQINKLIDSLPGVD 84 (132)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHSTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHhCCCCC
Confidence 46688889999999988741 358899999999765
No 15
>4a1q_A ORF E73; viral protein, extremophIle, archaea, ribbon-helix-helix Pro DNA-binding proteins; NMR {Sulfolobus virus ragged hills} PDB: 4aai_A
Probab=24.63 E-value=65 Score=23.30 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=33.3
Q ss_pred HHHHHhhhcccchhhhHHHHHh---------h---cCCCCChhHHHHHHHHHH
Q 026590 160 YVRKYLRLKSTFMYYDFDNVIS---------A---AAPTDKQPLTDLANRLFE 200 (236)
Q Consensus 160 yVr~yLRlka~~Lr~DL~tlIs---------s---kPkdeKK~l~~LankLF~ 200 (236)
+|-.-|.+-+-||..||..+|. . +|++-|+...+..++||-
T Consensus 19 dvy~~lklvsvylnrdmteiieeavvmwliqnkek~p~el~pki~ei~krffp 71 (73)
T 4a1q_A 19 DVYHTLKLVSVYLNRDMTEIIEEAVVMWLIQNKEKLPNELKPKIDEISKRFFP 71 (73)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHGGGCCTTTTTHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhhhCchhhCccHHHHHHhccC
Confidence 4556788888999999998874 2 688889999999999883
No 16
>2j0o_A Invasin IPAD; type III secretion, cell invasion, T3SS, plasmid, virulence; 3.00A {Shigella flexneri} SCOP: a.250.1.1
Probab=21.99 E-value=1.3e+02 Score=27.62 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=51.8
Q ss_pred HHHHhhhcccchhhhHHHHHhhcCCCCCh------hHHHHHHHHHHhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhh
Q 026590 161 VRKYLRLKSTFMYYDFDNVISAAAPTDKQ------PLTDLANRLFESFEKLEVAVSTKNFPQTQSTYADTAVILHEVMDR 234 (236)
Q Consensus 161 Vr~yLRlka~~Lr~DL~tlIsskPkdeKK------~l~~LankLF~~le~LD~Aar~Kn~~~a~~~Y~~Tv~~LdeVlak 234 (236)
.-+.|-++--.++-++..|+.++|.+-.+ .+.++-..+-+.|..+- .=.-+-....-+.|-+-..+++++|++
T Consensus 81 l~~~l~r~e~~~~~~~r~l~~s~~~ea~kdG~~~~S~~elw~~Is~~I~~I~-sdYld~Ya~ivk~yTdyyQ~~ne~lsk 159 (318)
T 2j0o_A 81 LLDILSRHEYPINKDARELLHSAPKEAELDGDQMISHRELWAKIANSINDIN-EQYLKVYEHAVSSYTQMYQDFSAVLSS 159 (318)
T ss_dssp HHHHHHHTTCCCCHHHHHGGGGSCTTTCCCSCTTCCHHHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHhccHHHHhcCCcccchHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777889999999888755322 36667777777666653 112234556778888888999999988
Q ss_pred cC
Q 026590 235 MA 236 (236)
Q Consensus 235 i~ 236 (236)
|+
T Consensus 160 ls 161 (318)
T 2j0o_A 160 LA 161 (318)
T ss_dssp HG
T ss_pred HH
Confidence 74
No 17
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=20.22 E-value=2.2e+02 Score=21.45 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhhcCCCChHHHHHHhhhcccchhhhHHHHHhhcCCCCChhHHHHHHHHHHhHHHHHHHHhCCChhHHHHH
Q 026590 141 RYAFDLLAMADLIGPDTLNYVRKYLRLKSTFMYYDFDNVISAAAPTDKQPLTDLANRLFESFEKLEVAVSTKNFPQTQST 220 (236)
Q Consensus 141 ~sA~~L~~lkdLId~~sW~yVr~yLRlka~~Lr~DL~tlIsskPkdeKK~l~~LankLF~~le~LD~Aar~Kn~~~a~~~ 220 (236)
+..+++..|+..++...|..+....|.= +.....+-- ..|.+-...|..+++..+..+...+
T Consensus 43 s~~~Dl~~L~~A~~~~D~~~l~~~aHrL--------KGaa~~lG~----------~~L~~lc~~LE~~~~~~~~~~l~~~ 104 (116)
T 1sr2_A 43 TVPDDVKRLYTEAATSDFAALAQTAHRL--------KGVFAMLNL----------VPGKQLCETLEHLIREKDVPGIEKY 104 (116)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHH--------HHHHHHHTC----------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHHHHHcCH----------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5566666777777777788877776642 222222211 2344445566667888887777666
Q ss_pred HHHHHHHHHHH
Q 026590 221 YADTAVILHEV 231 (236)
Q Consensus 221 Y~~Tv~~LdeV 231 (236)
+.+.-..++.+
T Consensus 105 i~~L~~~l~~L 115 (116)
T 1sr2_A 105 ISDIDSYVKSL 115 (116)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555544443
Done!