BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026591
         (236 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
           Complex With N-Oxalylglycine
 pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
           Complex With N-Oxalylglycine
 pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
           Complex With Alpha-Ketoglutarate
 pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
           Complex With Alpha-Ketoglutarate
          Length = 488

 Score = 31.6 bits (70), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 19  FFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQDVIRLDDAAKL 78
           +F+G  +  EE       + +D     CP+C  LHGS  + + R +   D   +DD +K 
Sbjct: 61  WFHGSCVGVEEH------HAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKP 114

Query: 79  VDC 81
           V  
Sbjct: 115 VQA 117


>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
           Complexed With SubstrateLIGAND.
 pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
           Complexed With SubstrateLIGAND.
 pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
           Complexed With SubstrateLIGAND.
 pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
           Complexed With SubstrateLIGAND
          Length = 393

 Score = 30.4 bits (67), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 21  NGCIIHEEERKNE------KNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQDVIR 71
           N  +  +EERK+         ++  D C ++C   L +HG +  L  + Y  Q  +R
Sbjct: 313 NAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYL--KDYAVQQYVR 367


>pdb|2A6Y|A Chain A, Crystal Structure Of Emp47p Carbohydrate Recognition
           Domain (Crd), Tetragonal Crystal Form
          Length = 256

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 29/146 (19%)

Query: 74  DAAKLVDCDYVQPYINNGAKVIFLNQRPQSRTRSSGNICSTCDRS------------LQD 121
           DA+KL   DY  P + N  KV    Q  +  +   G I  T +++            L+D
Sbjct: 10  DASKL-SSDYSLPDLINTRKVPNNWQTGEQASLEEGRIVLTSNQNSKGSLWLKQGFDLKD 68

Query: 122 SYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSIL------EPVGP 175
           S+        + Y  + +GG+S +F + + +P  +  + NG +  D +        P+GP
Sbjct: 69  SFTMEWTFRSVGYSGQTDGGISFWFVQDSNIPRDKQLY-NGPVNYDGLQLLVDNNGPLGP 127

Query: 176 TRTSSGSDG---------YGGALASC 192
           T     +DG         Y  + ASC
Sbjct: 128 TLRGQLNDGQKPVDKTKIYDQSFASC 153


>pdb|2A6Z|A Chain A, Crystal Structure Of Emp47p Carbohydrate Recognition
           Domain (Crd), Monoclinic Crystal Form 1
 pdb|2A70|A Chain A, Crystal Structure Of Emp47p Carbohydrate Recognition
           Domain (Crd), Monoclinic Crystal Form 2
 pdb|2A70|B Chain B, Crystal Structure Of Emp47p Carbohydrate Recognition
           Domain (Crd), Monoclinic Crystal Form 2
 pdb|2A71|A Chain A, Crystal Structure Of Emp47p Carbohydrate Recognition
           Domain (Crd), Orthorhombic Crystal Form
 pdb|2A71|B Chain B, Crystal Structure Of Emp47p Carbohydrate Recognition
           Domain (Crd), Orthorhombic Crystal Form
 pdb|2A71|C Chain C, Crystal Structure Of Emp47p Carbohydrate Recognition
           Domain (Crd), Orthorhombic Crystal Form
 pdb|2A71|D Chain D, Crystal Structure Of Emp47p Carbohydrate Recognition
           Domain (Crd), Orthorhombic Crystal Form
          Length = 222

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 29/146 (19%)

Query: 74  DAAKLVDCDYVQPYINNGAKVIFLNQRPQSRTRSSGNICSTCDRS------------LQD 121
           DA+KL   DY  P + N  KV    Q  +  +   G I  T +++            L+D
Sbjct: 3   DASKL-SSDYSLPDLINTRKVPNNWQTGEQASLEEGRIVLTSNQNSKGSLWLKQGFDLKD 61

Query: 122 SYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSIL------EPVGP 175
           S+        + Y  + +GG+S +F + + +P  +  + NG +  D +        P+GP
Sbjct: 62  SFTMEWTFRSVGYSGQTDGGISFWFVQDSNIPRDKQLY-NGPVNYDGLQLLVDNNGPLGP 120

Query: 176 TRTSSGSDG---------YGGALASC 192
           T     +DG         Y  + ASC
Sbjct: 121 TLRGQLNDGQKPVDKTKIYDQSFASC 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,008,773
Number of Sequences: 62578
Number of extensions: 273305
Number of successful extensions: 368
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 7
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)