BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026591
         (236 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O66853|Y591_AQUAE Uncharacterized protein aq_591 OS=Aquifex aeolicus (strain VF5)
           GN=aq_591 PE=4 SV=1
          Length = 333

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 112 CSTCDRSLQDSYLFCCLSCKIDYLIRIEGGLSKFFFECNFLPLPESSFENGLMTPDSILE 171
           C  C R L+    F CL+  +D+L      ++ FFFE  FLPL E   +   ++ ++  E
Sbjct: 123 CEICTRGLEGEEFFNCLTQNVDFLTATH--IANFFFEEEFLPLNEEIAQILNISKENYFE 180

Query: 172 PVGPTRTSSGSDGYGG--ALASCDTIKIVKKKR 202
            +   + ++  + YG    L   D++K+   KR
Sbjct: 181 VIKKLKGANLKNLYGALYVLLQRDSVKVNHVKR 213


>sp|Q0ATJ7|TRPF_MARMM N-(5'-phosphoribosyl)anthranilate isomerase OS=Maricaulis maris
           (strain MCS10) GN=trpF PE=3 SV=1
          Length = 211

 Score = 35.4 bits (80), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 11/102 (10%)

Query: 44  SLCPHCLSLHGS---HRLLQIRRYVYQDVIRLDDAAKLVDCDYVQPYINNGAKVIFLNQR 100
           ++ P  + LHGS    R++Q R Y  + +I+    A+  D D   PY +  A ++  + +
Sbjct: 73  AMRPDWIQLHGSESPQRVVQARAYAKRGIIKALPVAEASDLDAANPY-DRVADMLLFDAK 131

Query: 101 PQSRTRSSGNICSTCDRSLQDSYLFCCLSCKIDYLIRIEGGL 142
           P +     G +    D +L  S     L   + +L  + GGL
Sbjct: 132 PPAGADRPGGLGHGYDYALLKS-----LQISVPWL--LSGGL 166


>sp|Q3UWM4|KDM7_MOUSE Lysine-specific demethylase 7 OS=Mus musculus GN=Jhdm1d PE=2 SV=2
          Length = 940

 Score = 33.9 bits (76), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 19  FFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQDVIRLDDAAKL 78
           +F+G  +  EE       + +D     CP C +LHGS  + + R +   D   +DD +K 
Sbjct: 61  WFHGSCVGVEEH------HAVDIDLYHCPDCAALHGSSLMKKRRNWHRHDYTEVDDGSKP 114

Query: 79  VDC 81
           V  
Sbjct: 115 VQA 117


>sp|Q6ZMT4|KDM7_HUMAN Lysine-specific demethylase 7 OS=Homo sapiens GN=JHDM1D PE=1 SV=2
          Length = 941

 Score = 33.5 bits (75), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 19  FFNGCIIHEEERKNEKNIYCLDCCTSLCPHCLSLHGSHRLLQIRRYVYQDVIRLDDAAKL 78
           +F+G  +  EE       + +D     CP+C  LHGS  + + R +   D   +DD +K 
Sbjct: 61  WFHGSCVGVEEH------HAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKP 114

Query: 79  VDC 81
           V  
Sbjct: 115 VQA 117


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,354,698
Number of Sequences: 539616
Number of extensions: 3590887
Number of successful extensions: 7650
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7645
Number of HSP's gapped (non-prelim): 10
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)