Query 026591
Match_columns 236
No_of_seqs 129 out of 190
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 17:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d8u_A Ubiquitin ligase TRIM63 95.1 0.0084 2.9E-07 41.3 1.8 37 22-61 10-48 (64)
2 3ddt_A E3 ubiquitin-protein li 94.9 0.01 3.4E-07 39.1 1.6 39 20-61 6-46 (48)
3 2yvr_A Transcription intermedi 94.7 0.011 3.8E-07 39.0 1.5 37 22-61 8-45 (50)
4 1fre_A Nuclear factor XNF7; zi 94.2 0.026 8.7E-07 35.9 2.4 35 22-60 5-41 (42)
5 2did_A Tripartite motif protei 94.2 0.019 6.6E-07 38.4 1.8 36 22-61 10-47 (53)
6 2yrg_A Tripartite motif-contai 92.7 0.046 1.6E-06 37.7 1.8 36 22-61 16-53 (59)
7 2csv_A Tripartite motif protei 91.4 0.065 2.2E-06 37.9 1.3 37 21-61 19-56 (72)
8 2egm_A Tripartite motif-contai 90.6 0.032 1.1E-06 38.3 -0.8 35 22-60 20-56 (57)
9 2jun_A Midline-1; B-BOX, TRIM, 90.2 0.094 3.2E-06 38.7 1.3 38 21-61 60-99 (101)
10 2dja_A Midline-2; tripartite m 89.6 0.096 3.3E-06 37.7 0.9 38 22-62 20-59 (84)
11 2das_A Zinc finger MYM-type pr 74.9 1.7 5.8E-05 31.2 2.3 28 106-133 17-54 (62)
12 2w0t_A Lethal(3)malignant brai 73.6 0.65 2.2E-05 31.2 -0.1 24 109-132 6-35 (43)
13 2l8e_A Polyhomeotic-like prote 60.0 1.1 3.9E-05 30.5 -1.1 25 109-133 18-47 (49)
14 2jun_A Midline-1; B-BOX, TRIM, 50.0 5.8 0.0002 28.8 1.3 26 31-56 14-40 (101)
15 1lv3_A Hypothetical protein YA 43.5 3.7 0.00013 29.9 -0.7 28 109-136 9-41 (68)
16 3nis_A E3 ubiquitin-protein li 38.4 19 0.00065 26.7 2.5 30 30-59 16-51 (82)
17 2yqp_A Probable ATP-dependent 34.7 23 0.00078 25.2 2.3 29 108-136 18-51 (60)
18 2ffw_A Midline-1; B-BOX, ring 34.1 14 0.00047 26.5 1.1 24 32-55 42-66 (78)
19 3ny3_A E3 ubiquitin-protein li 31.6 17 0.00059 26.4 1.3 30 30-59 12-47 (75)
20 3sub_A ADP-ribosylation factor 30.1 4.7 0.00016 33.8 -2.2 44 33-77 20-77 (163)
21 2kuq_A Fibroblast growth facto 26.9 40 0.0014 27.9 2.9 21 169-189 112-133 (153)
22 2hiy_A Hypothetical protein; C 26.5 12 0.00041 31.1 -0.3 74 67-152 19-95 (183)
23 2iqj_A Stromal membrane-associ 24.6 6.9 0.00024 31.4 -2.1 45 33-78 25-83 (134)
24 3dwd_A ADP-ribosylation factor 24.1 7.3 0.00025 32.1 -2.1 46 32-78 35-94 (147)
25 2owa_A Arfgap-like finger doma 23.0 7 0.00024 31.6 -2.4 44 33-77 34-91 (138)
26 3zyq_A Hepatocyte growth facto 22.2 44 0.0015 28.3 2.3 44 1-51 152-196 (226)
27 2yqq_A Zinc finger HIT domain- 21.4 39 0.0013 23.5 1.5 26 108-134 11-42 (56)
28 1z60_A TFIIH basal transcripti 21.2 25 0.00087 24.6 0.5 9 34-42 37-45 (59)
No 1
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.07 E-value=0.0084 Score=41.33 Aligned_cols=37 Identities=35% Similarity=0.796 Sum_probs=29.8
Q ss_pred cCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEE
Q 026591 22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQI 61 (236)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQI 61 (236)
.|+.|+.. .-++||.+|...+|..|. ..|++|+++.|
T Consensus 10 ~C~~H~~e---~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l 48 (64)
T 2d8u_A 10 MCKEHEDE---KINIYCLTCEVPTCSMCKVFGIHKACEVAPL 48 (64)
T ss_dssp CCSSCTTC---CCCSEESSSCCCCCSHHHHSSSTTSSCEECT
T ss_pred cCcCcCCC---ccceEcCcCCceeCccccCCCcCCCCCeeCH
Confidence 59998542 368999999999999996 47999977655
No 2
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=94.87 E-value=0.01 Score=39.09 Aligned_cols=39 Identities=33% Similarity=0.747 Sum_probs=30.8
Q ss_pred cccCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEE
Q 026591 20 FNGCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQI 61 (236)
Q Consensus 20 F~~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQI 61 (236)
...|..|... .-++||.+|...+|..|. ..|++|+++.|
T Consensus 6 ~~~C~~H~~e---~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 6 HPMCKEHEDE---KINIYCLTCEVPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp SCBCSSSTTS---BCCEEETTTTEEECHHHHHHSTTTTSCEEEC
T ss_pred CCcCCCCCCc---cccEEcCCCCeeEcccccCCCcCCCCcEEeC
Confidence 3568888631 257999999999999996 47999988764
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=94.68 E-value=0.011 Score=39.01 Aligned_cols=37 Identities=24% Similarity=0.614 Sum_probs=29.3
Q ss_pred cCccCCCCCCCCCceeecccccccCCccc-cCCCCCceeEE
Q 026591 22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL-SLHGSHRLLQI 61 (236)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~-~~H~~HrvlQI 61 (236)
.|..|+. ..-++||.+|...+|..|. ..|++|+++.|
T Consensus 8 ~C~~H~~---e~l~lfC~~~~~~iC~~C~~~~H~~H~~~~l 45 (50)
T 2yvr_A 8 YCNVHKH---EPLVLFCESCDTLTCRDCQLNAHKDHQYQFL 45 (50)
T ss_dssp BCSSSTT---CBCCEEETTTTEEECHHHHHTTTTTCCEEET
T ss_pred cCcCCCC---CCEEEEeCCCCEEEecccCCCcCCCCceecH
Confidence 5888854 2368999999999999996 46889977654
No 4
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=94.25 E-value=0.026 Score=35.93 Aligned_cols=35 Identities=37% Similarity=0.677 Sum_probs=28.7
Q ss_pred cCccCCCCCCCCCceeecccccccCCcccc--CCCCCceeE
Q 026591 22 GCIIHEEERKNEKNIYCLDCCTSLCPHCLS--LHGSHRLLQ 60 (236)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~--~H~~HrvlQ 60 (236)
.|..|.. ...+||-++...+|..|.. .|++|+++.
T Consensus 5 ~C~~H~e----~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHDE----RLKLYCKDDGTLSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSCS----SCCCCCCSSSSSSCCTTSSCSSCTTCCCCC
T ss_pred cchhhCC----eeeEEeCCCCeEEeccCCCCCCCCCCcEec
Confidence 5888852 3689999999999999974 699998754
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=94.15 E-value=0.019 Score=38.36 Aligned_cols=36 Identities=22% Similarity=0.599 Sum_probs=29.8
Q ss_pred cCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEE
Q 026591 22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQI 61 (236)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQI 61 (236)
.|..|.. ...+||.+|...+|..|. ..|++|+++.|
T Consensus 10 ~C~~H~e----~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 10 LCPQHHE----ALSLFCYEDQEAVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp BCTTTCC----BCCEEESSSCSEECHHHHTSSTTTTSCEEEC
T ss_pred cChhhCC----eeeEEeCCCCeEEeccccCCCCCCCCcEeeH
Confidence 5998852 368999999999999996 47999987765
No 6
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.73 E-value=0.046 Score=37.72 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=30.2
Q ss_pred cCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEE
Q 026591 22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQI 61 (236)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQI 61 (236)
.|..|.. ...+||-++...+|..|. ..|++|+++.|
T Consensus 16 ~C~~H~e----~L~lfC~~d~~~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGE----KLLLFCQEDGKVICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCC----BCCEEETTTCSEECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCc----eeeeecCCCCcEEecccCCCCcCCCCcEeeH
Confidence 5999863 367999999999999996 47999988766
No 7
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=91.35 E-value=0.065 Score=37.90 Aligned_cols=37 Identities=22% Similarity=0.613 Sum_probs=29.8
Q ss_pred ccCccCCCCCCCCCceeecccccccCCccc-cCCCCCceeEE
Q 026591 21 NGCIIHEEERKNEKNIYCLDCCTSLCPHCL-SLHGSHRLLQI 61 (236)
Q Consensus 21 ~~C~~H~~~~knE~N~FCldC~~s~C~~C~-~~H~~HrvlQI 61 (236)
..|..|.. .-++||.+|...+|..|. ..|++|+++-|
T Consensus 19 ~~C~~H~e----~l~lfC~~d~~~iC~~C~~~~H~~H~~~~l 56 (72)
T 2csv_A 19 RKCPVHGK----TMELFCQTDQTCICYLCMFQEHKNHSTVTV 56 (72)
T ss_dssp CBCTTTCC----BCCEEESSSCCEECHHHHHTTTSSSCEEEH
T ss_pred CcCcccCC----ceEEEeCCCCeEEccccCCCCCCCCCEecH
Confidence 36998842 368999999999999996 47999987665
No 8
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.64 E-value=0.032 Score=38.30 Aligned_cols=35 Identities=23% Similarity=0.505 Sum_probs=28.7
Q ss_pred cCccCCCCCCCCCceeecccccccCCcccc--CCCCCceeE
Q 026591 22 GCIIHEEERKNEKNIYCLDCCTSLCPHCLS--LHGSHRLLQ 60 (236)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~--~H~~HrvlQ 60 (236)
.|..|.. ...+||-+|...+|..|.. .|++|+++.
T Consensus 20 ~C~~H~e----~L~lfC~~d~~~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQE----ALKLFCEVDEEAICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTCC----BCCEEETTTTEEECHHHHHSHHHHSSCEEC
T ss_pred cChhhCc----eeeEEcCCCCcEEecccCCCCCCCCCcEec
Confidence 5998842 3689999999999999974 699998764
No 9
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.19 E-value=0.094 Score=38.72 Aligned_cols=38 Identities=29% Similarity=0.666 Sum_probs=30.0
Q ss_pred ccCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEE
Q 026591 21 NGCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQI 61 (236)
Q Consensus 21 ~~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQI 61 (236)
..|..|... ..++||.+|...+|..|. ..|++|+++.|
T Consensus 60 ~~C~~H~~e---~l~~fC~~~~~~iC~~C~~~~~H~~H~~~~l 99 (101)
T 2jun_A 60 LMCLEHEDE---KVNMYCVTDDQLICALCKLVGRHRDHQVAAL 99 (101)
T ss_dssp CCCSSCSSS---CCCEEETTTTEEECHHHHHHTTTSSSCBCCC
T ss_pred CcCcCcCCC---cceEECCCCCCccchhcCCCCCcCCCCeecC
Confidence 369888531 268999999999999996 47999987644
No 10
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=89.60 E-value=0.096 Score=37.75 Aligned_cols=38 Identities=29% Similarity=0.698 Sum_probs=30.5
Q ss_pred cCccCCCCCCCCCceeecccccccCCccc--cCCCCCceeEEE
Q 026591 22 GCIIHEEERKNEKNIYCLDCCTSLCPHCL--SLHGSHRLLQIR 62 (236)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~HrvlQIR 62 (236)
.|..|... .-++||.+|...+|..|. ..|.+|+++-|-
T Consensus 20 ~C~~H~~e---~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ 59 (84)
T 2dja_A 20 TCLDHENE---KVNMYCVSDDQLICALCKLVGRHRDHQVASLN 59 (84)
T ss_dssp CCSSCSSS---CCCEEETTTTEEECHHHHHTSTTTTCCBCCCC
T ss_pred cCcCcCCc---cccEEcCCCCceEcccCcCCCCCCCCCccCHH
Confidence 69998531 268999999999999996 479999877663
No 11
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=74.86 E-value=1.7 Score=31.24 Aligned_cols=28 Identities=29% Similarity=0.772 Sum_probs=22.4
Q ss_pred CCCCCcccccccccCC----------Cceeeeeecccc
Q 026591 106 RSSGNICSTCDRSLQD----------SYLFCCLSCKID 133 (236)
Q Consensus 106 kg~~~~C~~C~R~L~d----------~~~FCSL~CKv~ 133 (236)
+.....|++|.+.|+. +-.|||..|--.
T Consensus 17 ~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~ 54 (62)
T 2das_A 17 KPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSS 54 (62)
T ss_dssp SCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHH
T ss_pred CccccChhhccchhhcCceeeeecCchhheechHHHcc
Confidence 5567899999999994 346999999544
No 12
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=73.64 E-value=0.65 Score=31.20 Aligned_cols=24 Identities=25% Similarity=0.728 Sum_probs=17.6
Q ss_pred CCcccccccc-cCC-----Cceeeeeeccc
Q 026591 109 GNICSTCDRS-LQD-----SYLFCCLSCKI 132 (236)
Q Consensus 109 ~~~C~~C~R~-L~d-----~~~FCSL~CKv 132 (236)
...||.|++. ... .-||||++|--
T Consensus 6 ~~~CE~CG~~g~~~~F~~ksKRFCS~~Car 35 (43)
T 2w0t_A 6 PAVCEMCGIVGTREAFFSKTKRFCSVSCSR 35 (43)
T ss_dssp EEECTTTCCEEETTTSCTTTSSSSSHHHHH
T ss_pred eehhhhhcCcchhhhhccCCcceechhhhC
Confidence 4589999984 333 44899999953
No 13
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=59.97 E-value=1.1 Score=30.55 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=20.1
Q ss_pred CCcccccccccCC-----Cceeeeeecccc
Q 026591 109 GNICSTCDRSLQD-----SYLFCCLSCKID 133 (236)
Q Consensus 109 ~~~C~~C~R~L~d-----~~~FCSL~CKv~ 133 (236)
...|+.|++.+.. +-+|||.+|.-.
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS~sCR~~ 47 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCSMTCAKR 47 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCSHHHHHH
T ss_pred CCcChhccCccccccCCCCCccCCHHHHhh
Confidence 4579999998884 358999999754
No 14
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=49.98 E-value=5.8 Score=28.81 Aligned_cols=26 Identities=27% Similarity=0.666 Sum_probs=22.0
Q ss_pred CCCCceeecccccccCCccccC-CCCC
Q 026591 31 KNEKNIYCLDCCTSLCPHCLSL-HGSH 56 (236)
Q Consensus 31 knE~N~FCldC~~s~C~~C~~~-H~~H 56 (236)
+.+...+|++|..+||..|+.. |..-
T Consensus 14 ~~~av~~C~~C~~~~C~~Cl~~~h~~~ 40 (101)
T 2jun_A 14 AQDAVKTCVTCEVSYCDECLKATHPNK 40 (101)
T ss_dssp CCBCCEEETTTTEEECHHHHHHHSCSC
T ss_pred CCCceEECCcCChHHhHHHCHHHhccC
Confidence 4567899999999999999987 8743
No 15
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=43.48 E-value=3.7 Score=29.88 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=21.8
Q ss_pred CCcccccccccC----CC-ceeeeeecccceEE
Q 026591 109 GNICSTCDRSLQ----DS-YLFCCLSCKIDYLI 136 (236)
Q Consensus 109 ~~~C~~C~R~L~----d~-~~FCSL~CKv~~v~ 136 (236)
...|.+|++... -+ ..|||-.||.-.+.
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iDLg 41 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLG 41 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHHHS
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhhhHH
Confidence 357999999985 23 47999999987644
No 16
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=38.42 E-value=19 Score=26.69 Aligned_cols=30 Identities=30% Similarity=0.651 Sum_probs=23.5
Q ss_pred CCCCCceeeccccc----ccCCcccc--CCCCCcee
Q 026591 30 RKNEKNIYCLDCCT----SLCPHCLS--LHGSHRLL 59 (236)
Q Consensus 30 ~knE~N~FCldC~~----s~C~~C~~--~H~~Hrvl 59 (236)
+++|--..|++|.. ++|..|-. .|.+|.+.
T Consensus 16 ~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~ 51 (82)
T 3nis_A 16 KIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVC 51 (82)
T ss_dssp CTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEE
T ss_pred cCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEE
Confidence 56788899999974 58888865 59999653
No 17
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.71 E-value=23 Score=25.21 Aligned_cols=29 Identities=34% Similarity=0.670 Sum_probs=22.5
Q ss_pred CCCcccccccccC---C--CceeeeeecccceEE
Q 026591 108 SGNICSTCDRSLQ---D--SYLFCCLSCKIDYLI 136 (236)
Q Consensus 108 ~~~~C~~C~R~L~---d--~~~FCSL~CKv~~v~ 136 (236)
+.+.|..|+|.=. | .-+-|||.||-.++.
T Consensus 18 gePvCvvCGryGeYICd~Td~DVCSlECK~~~l~ 51 (60)
T 2yqp_A 18 GEPICVVCGRYGEYICDKTDEDVCSLECKAKHLL 51 (60)
T ss_dssp TSCCCSSSSSCCSEECSSSCCEESSHHHHHHHHH
T ss_pred CCceEEEecCccceeecCCCcchhhHHHHHHHHH
Confidence 3567999998644 3 579999999988764
No 18
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=34.13 E-value=14 Score=26.51 Aligned_cols=24 Identities=29% Similarity=0.718 Sum_probs=21.1
Q ss_pred CCCceeecccccccCCccccC-CCC
Q 026591 32 NEKNIYCLDCCTSLCPHCLSL-HGS 55 (236)
Q Consensus 32 nE~N~FCldC~~s~C~~C~~~-H~~ 55 (236)
.+....|+.|..++|..|+.. |..
T Consensus 42 ~~A~ksCl~C~~s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 42 QDAVKTCVTCEVSYCDECLKATHPN 66 (78)
T ss_dssp CBCCEEETTTTEEECHHHHHHHSCC
T ss_pred CCCeeEccCccchhhhhhhHhhcCC
Confidence 667889999999999999996 854
No 19
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=31.57 E-value=17 Score=26.44 Aligned_cols=30 Identities=33% Similarity=0.766 Sum_probs=23.1
Q ss_pred CCCCCceeeccccc----ccCCcccc--CCCCCcee
Q 026591 30 RKNEKNIYCLDCCT----SLCPHCLS--LHGSHRLL 59 (236)
Q Consensus 30 ~knE~N~FCldC~~----s~C~~C~~--~H~~Hrvl 59 (236)
+++|-...|++|.. ++|..|-. .|.+|++.
T Consensus 12 ~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~ 47 (75)
T 3ny3_A 12 KVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYR 47 (75)
T ss_dssp CTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEE
T ss_pred cCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEE
Confidence 56888999999974 57888854 59999753
No 20
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=30.14 E-value=4.7 Score=33.84 Aligned_cols=44 Identities=27% Similarity=0.537 Sum_probs=32.1
Q ss_pred CCceeecccccc------------cCCccccCCC--CCceeEEEeccccceeeeccccc
Q 026591 33 EKNIYCLDCCTS------------LCPHCLSLHG--SHRLLQIRRYVYQDVIRLDDAAK 77 (236)
Q Consensus 33 E~N~FCldC~~s------------~C~~C~~~H~--~HrvlQIRR~sY~dVVRv~DIqk 77 (236)
+-|..|.||.+. +|-.|..-|+ +.++-+| |+.-.|.+..++|+.
T Consensus 20 p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkV-KSltLD~Wt~e~l~~ 77 (163)
T 3sub_A 20 ESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIV-RSIKMDIFTDEQLKY 77 (163)
T ss_dssp GGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCE-EETTTCCCCHHHHHH
T ss_pred CCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCee-eeccccCcCHHHHHH
Confidence 469999999641 7999988888 4667777 566677777666654
No 21
>2kuq_A Fibroblast growth factor receptor substrate 3, LI residue peptide from ALK tyrosine...; chimera, SNT-2, PTB domain, HALK, structural genomics; NMR {Homo sapiens} PDB: 2yt2_A
Probab=26.92 E-value=40 Score=27.94 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=13.0
Q ss_pred ccCCCCC-CccCCCCCCCCCCc
Q 026591 169 ILEPVGP-TRTSSGSDGYGGAL 189 (236)
Q Consensus 169 ~~~~~~~-~~~~s~~~~~~~~~ 189 (236)
+.++|.- ++++|||+|+.|+.
T Consensus 112 ~~~~p~~~~~~~~~~~~~~~~~ 133 (153)
T 2kuq_A 112 VMEEPVIITSGSSGSSGSSGSS 133 (153)
T ss_dssp CCCCCCCCCCCCSCCCCCCCSC
T ss_pred ccCCCcccccCCCCCCCCCCcc
Confidence 3444443 67778877777644
No 22
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=26.55 E-value=12 Score=31.09 Aligned_cols=74 Identities=8% Similarity=0.149 Sum_probs=41.3
Q ss_pred cceeeecccccc---cccCCccceEECCceEEEeecCCCCCCCCCCCcccccccccCCCceeeeeecccceEEeccCCcc
Q 026591 67 QDVIRLDDAAKL---VDCDYVQPYINNGAKVIFLNQRPQSRTRSSGNICSTCDRSLQDSYLFCCLSCKIDYLIRIEGGLS 143 (236)
Q Consensus 67 ~dVVRv~DIqkl---~D~S~IQtY~INsakVVFLn~RPq~r~kg~~~~C~~C~R~L~d~~~FCSL~CKv~~v~~~~~dls 143 (236)
++-|.+.|+..+ +-..+|+|| |||..|||--+.+. . ..-......|.+.|-| -+..++....+|.
T Consensus 19 ~nkv~MadLr~~l~~lGf~~V~Ty-I~SGNvvF~s~~~~--~----~l~~~ie~~l~~~fg~-----~v~v~vrs~~el~ 86 (183)
T 2hiy_A 19 KNKVVMAELRQELTNLGLEKVESY-INSGNIFFTSIDSK--A----QLVEKLETFFAVHYPF-----IQSFSLLSLEDFE 86 (183)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEE-TTTTEEEEEECSCH--H----HHHHHHHHHHHHHCTT-----CCCCEEEEHHHHH
T ss_pred CCcccHHHHHHHHHHcCCccceEE-EecCCEEEecCCCH--H----HHHHHHHHHHHHhcCC-----CCCEEEecHHHHH
Confidence 345667777765 477889999 89999999754421 0 0111122222221111 2344555566677
Q ss_pred ccccccccc
Q 026591 144 KFFFECNFL 152 (236)
Q Consensus 144 ~~l~~~~~~ 152 (236)
.++..+.|.
T Consensus 87 ~i~~~~Pf~ 95 (183)
T 2hiy_A 87 AELENLPAW 95 (183)
T ss_dssp HHHTTCCGG
T ss_pred HHHHhCCCC
Confidence 777666554
No 23
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=24.58 E-value=6.9 Score=31.42 Aligned_cols=45 Identities=22% Similarity=0.561 Sum_probs=32.0
Q ss_pred CCceeecccccc------------cCCccccCCCC--CceeEEEeccccceeeecccccc
Q 026591 33 EKNIYCLDCCTS------------LCPHCLSLHGS--HRLLQIRRYVYQDVIRLDDAAKL 78 (236)
Q Consensus 33 E~N~FCldC~~s------------~C~~C~~~H~~--HrvlQIRR~sY~dVVRv~DIqkl 78 (236)
.-|..|.||.+. +|..|..-|+. .++-+| |+.-.|.+..++|+.+
T Consensus 25 p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~V-kSl~ld~w~~~~l~~m 83 (134)
T 2iqj_A 25 EDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRV-KSVNLDQWTQEQIQCM 83 (134)
T ss_dssp GGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCE-EETTTSCCCHHHHHHH
T ss_pred cCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCce-eeccccCCCHHHHHHH
Confidence 469999999641 79999888874 455566 5666777777776554
No 24
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=24.14 E-value=7.3 Score=32.08 Aligned_cols=46 Identities=24% Similarity=0.445 Sum_probs=29.9
Q ss_pred CCCceeecccccc------------cCCccccCCCC--CceeEEEeccccceeeecccccc
Q 026591 32 NEKNIYCLDCCTS------------LCPHCLSLHGS--HRLLQIRRYVYQDVIRLDDAAKL 78 (236)
Q Consensus 32 nE~N~FCldC~~s------------~C~~C~~~H~~--HrvlQIRR~sY~dVVRv~DIqkl 78 (236)
..-|..|.||... +|-.|..-|+. .++-+| |+.-.|-+..++|+.+
T Consensus 35 ~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkV-kSl~LD~W~~~el~~m 94 (147)
T 3dwd_A 35 QDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFV-RSVTMDKWKDIELEKM 94 (147)
T ss_dssp STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCE-EESCC--CCHHHHHHH
T ss_pred CcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCcc-ccccccCCCHHHHHHH
Confidence 3468999999641 78999888883 566666 4555666665555543
No 25
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=23.00 E-value=7 Score=31.63 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=30.8
Q ss_pred CCceeecccccc------------cCCccccCCCC--CceeEEEeccccceeeeccccc
Q 026591 33 EKNIYCLDCCTS------------LCPHCLSLHGS--HRLLQIRRYVYQDVIRLDDAAK 77 (236)
Q Consensus 33 E~N~FCldC~~s------------~C~~C~~~H~~--HrvlQIRR~sY~dVVRv~DIqk 77 (236)
.-|..|.||... +|..|..-|+. .++-+| |+.-.|.+..++|+.
T Consensus 34 p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~V-rSl~lD~w~~~~l~~ 91 (138)
T 2owa_A 34 PENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFV-RSSDLDKFTPIQLVR 91 (138)
T ss_dssp GGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCE-EETTTSCCCHHHHHH
T ss_pred cCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCee-eecCcCcCCHHHHHH
Confidence 369999999641 79999888885 355566 566666666666643
No 26
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.15 E-value=44 Score=28.28 Aligned_cols=44 Identities=20% Similarity=0.529 Sum_probs=27.7
Q ss_pred CCCCCCCCchHHHHhcccccccCccC-CCCCCCCCceeecccccccCCcccc
Q 026591 1 MLVSSHLPRWLEVLFTEKFFNGCIIH-EEERKNEKNIYCLDCCTSLCPHCLS 51 (236)
Q Consensus 1 ~~~~~~~P~WL~~LL~~~FF~~C~~H-~~~~knE~N~FCldC~~s~C~~C~~ 51 (236)
|+.+...|.|+.. ..|..= ..-.-..+-.-|-.|-..+|..|..
T Consensus 152 mf~~~~~p~W~~~-------~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 152 MFAAERAPDWVDA-------EECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCCCCCCCCCCCC-------SBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred hhhcccccccccC-------CCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 4455678999963 244321 1111234568899999999999975
No 27
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.40 E-value=39 Score=23.45 Aligned_cols=26 Identities=19% Similarity=0.462 Sum_probs=18.0
Q ss_pred CCCcccccccccCC------Cceeeeeecccce
Q 026591 108 SGNICSTCDRSLQD------SYLFCCLSCKIDY 134 (236)
Q Consensus 108 ~~~~C~~C~R~L~d------~~~FCSL~CKv~~ 134 (236)
....|..|+. ... ..+||||.|--.|
T Consensus 11 ~~~~C~vC~~-~~kY~CPrC~~~yCSl~C~k~H 42 (56)
T 2yqq_A 11 STVVCVICLE-KPKYRCPACRVPYCSVVCFRKH 42 (56)
T ss_dssp CCCCCTTTCS-CCSEECTTTCCEESSHHHHHHH
T ss_pred CCCccCcCcC-CCeeeCCCCCCCeeCHHHHHHH
Confidence 3457888988 332 3689999996554
No 28
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=21.18 E-value=25 Score=24.58 Aligned_cols=9 Identities=44% Similarity=1.471 Sum_probs=5.3
Q ss_pred Cceeecccc
Q 026591 34 KNIYCLDCC 42 (236)
Q Consensus 34 ~N~FCldC~ 42 (236)
++.||+||-
T Consensus 37 ~~~FC~dCD 45 (59)
T 1z60_A 37 QNVFCVDCD 45 (59)
T ss_dssp TCCBCHHHH
T ss_pred CcCcccchh
Confidence 456666663
Done!