Query 026592
Match_columns 236
No_of_seqs 206 out of 876
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 17:15:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 4.9E-41 1.7E-45 284.6 11.9 113 2-114 58-171 (174)
2 1ut7_A No apical meristem prot 100.0 4E-40 1.4E-44 278.2 10.1 111 2-116 60-170 (171)
3 2h7a_A Hypothetical protein YC 8.4 1.3E+02 0.0044 23.1 1.3 16 104-119 14-29 (110)
4 2oh5_A Polyhedrin, C-polyhedri 7.7 2.3E+02 0.0078 23.6 2.6 27 37-63 140-167 (248)
5 2zvv_Y Cyclin-dependent kinase 7.3 1.8E+02 0.0061 16.6 1.2 9 59-67 16-24 (26)
6 1m5a_B Insulin B chain; alpha 4.7 2.6E+02 0.0089 16.6 0.9 9 13-21 21-29 (30)
7 1ri9_A FYN-binding protein; SH 4.2 3.2E+02 0.011 20.5 1.4 8 101-108 74-81 (102)
8 3mxt_A Pantothenate synthetase 4.1 2.3E+02 0.0079 25.1 0.5 7 225-231 56-62 (285)
9 3n8h_A Pantothenate synthetase 4.1 2.3E+02 0.0079 24.8 0.5 7 225-231 56-62 (264)
10 3q12_A Pantoate--beta-alanine 4.1 2.3E+02 0.008 25.0 0.5 7 225-231 57-63 (287)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=4.9e-41 Score=284.55 Aligned_cols=113 Identities=61% Similarity=1.220 Sum_probs=93.4
Q ss_pred CCCCCcCCCCCceEEEEeecCCCCCCCCCCccccCCcEEEEcccceeeecCCeEEEEEEEEEeeeCCCCCCcccCeEEeE
Q 026592 2 YENVEKAEFGEKEWYFFSPRDRKYPNGTRPNRATVSGYWKATGTDKAIYGGSKYLGVKKALVFYKGRPPKGIKTDWIMHE 81 (236)
Q Consensus 2 WdLP~~~~~ge~eWYFFspr~rk~~~G~R~nR~t~~GyWKatG~~k~I~~~~~~VG~KktLvFy~Gr~p~g~kT~WiMhE 81 (236)
||||+.+..++++|||||+|++||++|.|+||+|++||||+||++++|.+++.+||+||+||||.|++|+|.||+|+|||
T Consensus 58 w~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhE 137 (174)
T 3ulx_A 58 WDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHE 137 (174)
T ss_dssp GGSGGGCSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEE
T ss_pred hhhhhhhccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEE
Confidence 99999998899999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCC-CCCCCCCCCceEEEEEEeeCCC
Q 026592 82 YRLNDPTRQPY-KHNGSMKLDDWVLCRIYKKRQT 114 (236)
Q Consensus 82 Y~l~~~~~~~~-~~~g~~~~dd~VLCRIykK~~~ 114 (236)
|+|......+. ...+++++++|||||||+|++.
T Consensus 138 Y~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~~ 171 (174)
T 3ulx_A 138 YRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171 (174)
T ss_dssp EEECSCC-----------CCSSEEEEEEEESCC-
T ss_pred EEeCCCCCcccccccCCCCCCCEEEEEEEEcCCC
Confidence 99998754321 1233467799999999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=4e-40 Score=278.20 Aligned_cols=111 Identities=69% Similarity=1.245 Sum_probs=89.1
Q ss_pred CCCCCcCCCCCceEEEEeecCCCCCCCCCCccccCCcEEEEcccceeeecCCeEEEEEEEEEeeeCCCCCCcccCeEEeE
Q 026592 2 YENVEKAEFGEKEWYFFSPRDRKYPNGTRPNRATVSGYWKATGTDKAIYGGSKYLGVKKALVFYKGRPPKGIKTDWIMHE 81 (236)
Q Consensus 2 WdLP~~~~~ge~eWYFFspr~rk~~~G~R~nR~t~~GyWKatG~~k~I~~~~~~VG~KktLvFy~Gr~p~g~kT~WiMhE 81 (236)
||||+++..++++|||||+|++||++|.|++|+|++||||+||++++|..++.+||+||+|+||.|++|++.||+|+|||
T Consensus 60 w~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhE 139 (171)
T 1ut7_A 60 WVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHE 139 (171)
T ss_dssp GGHHHHSSSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEE
T ss_pred hHhhchhhcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEE
Confidence 99999998899999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCceEEEEEEeeCCCCC
Q 026592 82 YRLNDPTRQPYKHNGSMKLDDWVLCRIYKKRQTGS 116 (236)
Q Consensus 82 Y~l~~~~~~~~~~~g~~~~dd~VLCRIykK~~~~~ 116 (236)
|+|..... ..+.+..++|||||||+|+...+
T Consensus 140 Y~l~~~~~----~~~~~~~~~~VlCrv~~k~~~~~ 170 (171)
T 1ut7_A 140 YRLIEPSR----RNGSTKLDDWVLCRIYKKQSSAQ 170 (171)
T ss_dssp EEECCCC------------CCEEEEEEEECC----
T ss_pred EEcCCCcc----ccCcccCCCEEEEEEEEcCCCCC
Confidence 99998752 12234568999999999987543
No 3
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=8.44 E-value=1.3e+02 Score=23.15 Aligned_cols=16 Identities=19% Similarity=0.600 Sum_probs=13.2
Q ss_pred EEEEEEeeCCCCCCCc
Q 026592 104 VLCRIYKKRQTGSRSV 119 (236)
Q Consensus 104 VLCRIykK~~~~~~~~ 119 (236)
-||-|||++++...++
T Consensus 14 mlC~IYkS~KK~~~YL 29 (110)
T 2h7a_A 14 MFCVIYRSSKRDQTYL 29 (110)
T ss_dssp CCEEEEEETTSSSCEE
T ss_pred EEEEEEecCCCCceEE
Confidence 6999999998877644
No 4
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=7.70 E-value=2.3e+02 Score=23.56 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=21.2
Q ss_pred CcEEEEccc-ceeeecCCeEEEEEEEEE
Q 026592 37 SGYWKATGT-DKAIYGGSKYLGVKKALV 63 (236)
Q Consensus 37 ~GyWKatG~-~k~I~~~~~~VG~KktLv 63 (236)
+--|.+||- -+.|..+|.+||.-..|.
T Consensus 140 shpweatgikyrki~~dgeivgyshyfe 167 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFE 167 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEE
T ss_pred cCCccccCceEEEeeecceEeeeeeeee
Confidence 456999995 567888899999887664
No 5
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=7.35 E-value=1.8e+02 Score=16.61 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=4.6
Q ss_pred EEEEEeeeC
Q 026592 59 KKALVFYKG 67 (236)
Q Consensus 59 KktLvFy~G 67 (236)
|+.|+|+..
T Consensus 16 KRRlvf~~r 24 (26)
T 2zvv_Y 16 KRRLIFSXX 24 (26)
T ss_pred hceEEEEec
Confidence 455555543
No 6
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=4.67 E-value=2.6e+02 Score=16.62 Aligned_cols=9 Identities=22% Similarity=0.984 Sum_probs=6.6
Q ss_pred ceEEEEeec
Q 026592 13 KEWYFFSPR 21 (236)
Q Consensus 13 ~eWYFFspr 21 (236)
..-|||+|+
T Consensus 21 dRGF~~~p~ 29 (30)
T 1m5a_B 21 ERGFFYTPK 29 (30)
T ss_dssp GGCEEECCC
T ss_pred cCccccCCC
Confidence 457888885
No 7
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=4.23 E-value=3.2e+02 Score=20.54 Aligned_cols=8 Identities=63% Similarity=0.916 Sum_probs=6.8
Q ss_pred CceEEEEE
Q 026592 101 DDWVLCRI 108 (236)
Q Consensus 101 dd~VLCRI 108 (236)
++|+|||=
T Consensus 74 ~~wwLcRN 81 (102)
T 1ri9_A 74 DTKVLCRN 81 (102)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEC
Confidence 58999984
No 8
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=4.09 E-value=2.3e+02 Score=25.07 Aligned_cols=7 Identities=71% Similarity=1.246 Sum_probs=5.2
Q ss_pred ccccccc
Q 026592 225 SLFVNPT 231 (236)
Q Consensus 225 ~~~~~~~ 231 (236)
++||||+
T Consensus 56 SIFVNP~ 62 (285)
T 3mxt_A 56 SIFVNPM 62 (285)
T ss_dssp EECCCGG
T ss_pred EeccCcc
Confidence 6778876
No 9
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=4.09 E-value=2.3e+02 Score=24.83 Aligned_cols=7 Identities=86% Similarity=1.393 Sum_probs=5.2
Q ss_pred ccccccc
Q 026592 225 SLFVNPT 231 (236)
Q Consensus 225 ~~~~~~~ 231 (236)
++||||+
T Consensus 56 SIFVNP~ 62 (264)
T 3n8h_A 56 SIFVNPT 62 (264)
T ss_dssp EECCCGG
T ss_pred EEccCcc
Confidence 6778876
No 10
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=4.05 E-value=2.3e+02 Score=25.05 Aligned_cols=7 Identities=57% Similarity=1.179 Sum_probs=5.2
Q ss_pred ccccccc
Q 026592 225 SLFVNPT 231 (236)
Q Consensus 225 ~~~~~~~ 231 (236)
.+||||+
T Consensus 57 SIFVNP~ 63 (287)
T 3q12_A 57 TIFVNPL 63 (287)
T ss_dssp EECCCGG
T ss_pred EeccCcc
Confidence 6778876
Done!