BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026593
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic OS=Arabidopsis
thaliana GN=TOC33 PE=1 SV=1
Length = 297
Score = 340 bits (872), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 159/222 (71%), Positives = 192/222 (86%), Gaps = 1/222 (0%)
Query: 1 MGSLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60
MGSL+ REW GFQQFP+ATQ KLIE KLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE
Sbjct: 1 MGSLV-REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59
Query: 61 RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 120
+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN+QALELIKGFL+N+TIDV
Sbjct: 60 QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDV 119
Query: 121 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRS 180
LLY DRLD YRVD+LD+Q++ A+T TFGK+IW K+LLVLTHAQ PPD L+Y+ + SKRS
Sbjct: 120 LLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRS 179
Query: 181 DALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEK 222
D+LLKTIR G+ + K EFED A+ V ENSGRCSKN+ DEK
Sbjct: 180 DSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis
thaliana GN=TOC34 PE=1 SV=2
Length = 313
Score = 325 bits (832), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 150/218 (68%), Positives = 183/218 (83%)
Query: 6 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTV 65
LREW G QQFP ATQ+KL+E+L K K+E+V++LT+LVMGKGGVGKSSTVNSVIGE+ V
Sbjct: 7 LREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEKAAAV 66
Query: 66 NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYAD 125
++FQSE LRP +VSR++ GFTLNIIDTPGL+E GYVN QA+ +IK FLLN TIDVLLY D
Sbjct: 67 STFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVLLYVD 126
Query: 126 RLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLK 185
RLD YRVDDLDRQ++ A+T FGK+IW+KS LVLTHAQ PPDGLNY+ + SKRS+ALLK
Sbjct: 127 RLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSNALLK 186
Query: 186 TIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKV 223
I+ GA L K + + +++PV LVENSGRC KNE+DEK+
Sbjct: 187 VIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKI 224
>sp|Q41009|TOC34_PEA Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1
Length = 310
Score = 308 bits (789), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 146/218 (66%), Positives = 179/218 (82%), Gaps = 1/218 (0%)
Query: 6 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTV 65
+REW+G F ATQ KL+ELL LKQE+VN+LTILVMGKGGVGKSSTVNS+IGERVV++
Sbjct: 8 VREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSI 67
Query: 66 NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYAD 125
+ FQSE RPVMVSRS+ GFTLNIIDTPGL+E GY+N AL +IK FLL+KTIDVLLY D
Sbjct: 68 SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVD 127
Query: 126 RLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLK 185
RLDAYRVD+LD+ + KA+T +FGK IW K+++ LTHAQ PPDGL YD + SKRS+ALL+
Sbjct: 128 RLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 187
Query: 186 TIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKV 223
+R GA L K + + +PV L+ENSGRC+KN++DEKV
Sbjct: 188 VVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKV 224
>sp|Q9LUS2|TC120_ARATH Translocase of chloroplast 120, chloroplastic OS=Arabidopsis
thaliana GN=TOC120 PE=1 SV=1
Length = 1089
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 114/210 (54%), Gaps = 14/210 (6%)
Query: 23 LIELLSKLKQENVN-TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS 81
+ E L Q+ ++ + TI+V+GK GVGKS+T+NS+ E ++ ++FQ + +
Sbjct: 441 MAEQLEAAAQDPLDFSCTIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGF 500
Query: 82 KGGFTLNIIDTPGLVEA---GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQ 138
G + +IDTPGL+ + + N + L+ ++ F+ D++LY DRLD D D
Sbjct: 501 VQGIKVRVIDTPGLLPSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMP 560
Query: 139 IIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGL 193
+++ +T FG IW +++ LTHA PPDG N YD++ ++RS + + IR AG
Sbjct: 561 LLRTITDVFGPSIWFNAIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGD 620
Query: 194 GKHEFEDYAVPVALVENSGRCSKNENDEKV 223
+ PV+LVEN C N ++V
Sbjct: 621 MR-----LMNPVSLVENHSACRTNRAGQRV 645
>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana
GN=TOC159 PE=1 SV=1
Length = 1503
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 119/216 (55%), Gaps = 12/216 (5%)
Query: 18 ATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM 77
A + K +E ++ +E + +L ILV+GK GVGKS+T+NS++G ++ ++++F
Sbjct: 836 AAKKKAVESEAEGNEELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVRE 895
Query: 78 VSRSKGGFTLNIIDTPGLVEAGY---VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD 134
+S + G + IDTPGL A N + L +K + D++LY DRLD D
Sbjct: 896 ISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDL 955
Query: 135 LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG-----LNYDVYCSKRSDALLKTIRL 189
+ +++ +T + G IW+ +++ LTHA PPDG L+YDV+ ++ S + ++I
Sbjct: 956 NNLPLLRTITASLGTSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQCSHIVQQSI-- 1013
Query: 190 GAGLGKHEFEDYAV--PVALVENSGRCSKNENDEKV 223
G +G + ++ PV+LVEN C KN KV
Sbjct: 1014 GQAVGDLRLMNPSLMNPVSLVENHPLCRKNREGVKV 1049
>sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis
thaliana GN=TOC132 PE=1 SV=1
Length = 1206
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 110/210 (52%), Gaps = 14/210 (6%)
Query: 23 LIELLSKLKQENVN-TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS 81
+ E L Q+ ++ + TI+V+GK GVGKS+T+NS+ E ++FQ R V
Sbjct: 559 MAEQLEAAGQDPLDFSCTIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGL 618
Query: 82 KGGFTLNIIDTPGLVEA---GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQ 138
G + +IDTPGL+ + N + L +K F+ D++LY DRLD D D
Sbjct: 619 VQGIKVRVIDTPGLLPSWSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMP 678
Query: 139 IIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN-----YDVYCSKRSDALLKTIRLGAGL 193
+++ ++ FG IW +++ LTHA PPDG N YD++ ++RS + + IR AG
Sbjct: 679 LLRTISDVFGPSIWFNAIVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGD 738
Query: 194 GKHEFEDYAVPVALVENSGRCSKNENDEKV 223
+ PV+LVEN C N ++V
Sbjct: 739 MR-----LMNPVSLVENHSACRTNRAGQRV 763
>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1
Length = 449
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 113/220 (51%), Gaps = 18/220 (8%)
Query: 19 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV 78
T +L E+L+ LK N +L++G+ GVGKSST+N+V G + V+S +S P
Sbjct: 134 TTEELQEMLAVLKGVQ-NECNVLLLGRTGVGKSSTLNTVFGIDI-PVHSSESCTQDPFTY 191
Query: 79 SRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD 136
SR GF LNIIDTPG +++ V+ + I+ +L KTI +L+ ++ R D
Sbjct: 192 SRVVNGFKLNIIDTPGFLDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAH 251
Query: 137 RQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVY--------CSKRSDALLKTIR 188
+ +I T G Q+WR + +VLT+A PD YD + K +A R
Sbjct: 252 QLVINQFTEKLGPQLWRNAAVVLTYANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFR 310
Query: 189 -----LGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKV 223
+ A L + ++ +PV +ENS RC +NE ++V
Sbjct: 311 KFFAGILAQLPQDDYPPKHIPVYAMENSRRCKRNEQGQRV 350
>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis
thaliana GN=TOC90 PE=1 SV=1
Length = 793
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 93/189 (49%), Gaps = 13/189 (6%)
Query: 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL- 95
+L ILV+GK GVGKS+T+NS+ G+ ++F+ R V + G + IDTPG
Sbjct: 166 SLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFH 225
Query: 96 ---VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIW 152
+ N + L IK ++ + DV+LY DRLD + D +++ +T FG IW
Sbjct: 226 PLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIW 285
Query: 153 RKSLLVLTHAQLCPP----DGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALV 208
++LV+TH+ +NY+ Y +R D + I K E PV LV
Sbjct: 286 LNTILVMTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLE-----NPVLLV 340
Query: 209 ENSGRCSKN 217
EN C KN
Sbjct: 341 ENHPSCKKN 349
>sp|A5PKB7|GIMA6_BOVIN GTPase IMAP family member 6 OS=Bos taurus GN=GIMAP6 PE=2 SV=1
Length = 341
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 19/151 (12%)
Query: 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG-----GFTL 87
+ TL ++++GK G GKS+T NS++G RV F+S+ + RPV + +G G L
Sbjct: 90 TLQTLWLILVGKSGSGKSATGNSILGRRV-----FESKLSARPVTQAFQQGCRAWEGREL 144
Query: 88 NIIDTPGLVE---AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVT 144
+IDTP ++ AG+ Q + L K VLL R + D+Q+ +
Sbjct: 145 QVIDTPDILSPWAAGWATAQGVGEAGTGSLPKQYAVLLVT---QLGRFTEEDQQVAGRLE 201
Query: 145 GTFGKQIWRKSLLVLTHAQLCPPDGLNYDVY 175
FGK I +++LV T + DG + + Y
Sbjct: 202 EVFGKGILARTILVFTRKEDL--DGRSLETY 230
>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3
Length = 277
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-MVSRSKGGFTLNIIDTPGLV 96
L ++++G+ G GKS+T NS++G++ R + SR G+ + ++DTP +
Sbjct: 4 LRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQVEVVDTPDIF 63
Query: 97 --EAGYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR 153
E + +E + F+L+ LL +L + + D Q + AV FGKQ+
Sbjct: 64 SSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQ--DSQALAAVKRLFGKQVMA 121
Query: 154 KSLLVLTHAQLCPPDGLNYDVYCS 177
++++V T + D L V+C+
Sbjct: 122 RTVVVFTRQEDLAGDSLQDYVHCT 145
>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1
Length = 292
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 12 FQQFPSA------TQNKLIELLSKLKQENVNT---LTILVMGKGGVGKSSTVNSVIGERV 62
++Q P +Q+ ++EL L+++ T L +++MGK G GKS+T NS++G V
Sbjct: 6 YEQIPQENPPEELSQDPVLELSGGLREKEQKTPRRLRLILMGKTGSGKSATGNSILGRDV 65
Query: 63 VTVNSFQSE-ALRPVMV-----SRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116
F+S+ + RPV SR G L +IDTP ++ A + + +L+
Sbjct: 66 -----FESKLSTRPVTKTSQRRSREWAGKELEVIDTPNILSPQVSPEVADAICQAIVLSA 120
Query: 117 T-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163
+L +L R D D+Q+++ + FG + ++LV T +
Sbjct: 121 PGPHAVLLVTQLG--RFTDEDQQVVRRLQEVFGVGVLGHTILVFTRKE 166
>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2
SV=1
Length = 304
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 15/147 (10%)
Query: 25 ELLSKLKQENVNT--LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRS 81
EL LK++ + L +L++GK G GKS+T NS++G +V F+S+ + RPV ++
Sbjct: 88 ELTKDLKEKKLTPKRLQLLLVGKTGSGKSATGNSILGRQV-----FESKISARPVTMAFQ 142
Query: 82 KG-----GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD 136
KG G L +IDTP ++ + I L + +L ++ Y + D
Sbjct: 143 KGSRELEGKELEVIDTPDILSPQNQPEATAKKICDILASPGPHAVLLVIQVGRYTTE--D 200
Query: 137 RQIIKAVTGTFGKQIWRKSLLVLTHAQ 163
++ + + FG I ++LV T +
Sbjct: 201 QEAARCLQEIFGNGILAYTILVFTRKE 227
>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2
SV=1
Length = 688
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 28 SKLKQ-ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--- 83
S KQ + +TL +L++GK G GKS+T N+++G+ V F+S ++ R +
Sbjct: 38 SNFKQSQGTSTLRLLLLGKQGAGKSATGNTILGKAV-----FESRFSHHMVTKRCQSESV 92
Query: 84 ---GFTLNIIDTPGLVEA-GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQI 139
G + +IDTP L + G Q L + L VLL + + D++
Sbjct: 93 SVRGKQVIVIDTPDLFSSLGCPEVQQQNLRQCLDLLADPYVLLLVTPIG--HSTEEDKKT 150
Query: 140 IKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTI 187
I+ + G FG Q +R ++V T D L + K L++ I
Sbjct: 151 IEGIQGVFGPQAYRHMIVVFTREDELGEDTLQNHIESKKYLKKLIENI 198
Score = 37.4 bits (85), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 15/159 (9%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLN-----IIDT 92
L I+++G+ GVGKS+T N+++G R V+ +++ PV G TL+ ++DT
Sbjct: 475 LNIILLGRSGVGKSATGNTILG-RPAFVSQLRAQ---PVTSRSQSGRRTLDWQDIVVVDT 530
Query: 93 PGLVEAGYVNYQALEL---IKGFLLNKTIDVL-LYADRLDAYRVDDLDRQIIKAVTGTFG 148
P L + +L IK LL + + ++ R D +++ + +F
Sbjct: 531 PSLNQMSGTEKNPAQLKKEIKQCLLQNCEEGMKVFVLVFQLGRFTQEDEAVVEQLEASFE 590
Query: 149 KQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTI 187
+ I + +++ T + DG YD + + + +LK I
Sbjct: 591 ENIMKYMIVLFTRKEDL-GDGDLYD-FTNNTKNKVLKRI 627
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGL 95
L +L+MGK GVGKS+ NS++G++V + + + S S+ IID+P +
Sbjct: 284 LRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTEAFASHSRLWNQKKFLIIDSPEI 343
Query: 96 ----VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQI 151
++ V FLL + L + D IIK + FG++
Sbjct: 344 SSWKLDESDVKEHTFPGPHAFLLVTPLGSSL--------KSGDSVFSIIKRI---FGEKF 392
Query: 152 WRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAG 192
+ ++++ T + +G + D + +K +DAL I++ G
Sbjct: 393 IKFTIILFTRKE--DFEGQDLDTF-TKENDALCNLIQIFEG 430
>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1
Length = 688
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 16 PSATQNKLIELLSKLKQ-ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALR 74
PSA+Q + KQ + +TL +L++GK G GKS+T N+++G+ V F+S+
Sbjct: 30 PSASQGQE----GNFKQNQGTSTLRLLLLGKQGAGKSATGNTILGKAV-----FESKFSD 80
Query: 75 PVMVSRSKG------GFTLNIIDTPGL---VEAGYVNYQALELIKGFLLNKTIDVLLYAD 125
++ R + G + +IDTP L + V Q L+ L + VLL
Sbjct: 81 HMVTDRCQSESVSVRGKQVIVIDTPDLFSSLSCSEVRQQNLKQCLELLADDHC-VLLLVT 139
Query: 126 RLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGL-NY 172
+ Y + DR+ I+ + G G + +R ++V T D L NY
Sbjct: 140 PIGHYTEE--DRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNY 185
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTP 93
L +L+MGK GVGKS+ NS++G++V + + + S S+ G + IID+P
Sbjct: 285 LRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSP 342
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLN-----IIDT 92
L I+++G+ G GKS+T N+++G F +PV S G TL+ ++DT
Sbjct: 476 LNIILLGRSGAGKSATGNTILGRSAF----FSQLRAQPVTSSSQSGKRTLDWQDVVVVDT 531
Query: 93 PGLVE 97
P ++
Sbjct: 532 PSFIQ 536
>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1
Length = 219
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 31 KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR--SKGGFTLN 88
+ + + L I+++GK G GKSST NS++GE+V + ++++ V R + G L
Sbjct: 24 QDQGIPQLRIVLLGKTGAGKSSTGNSILGEKVFN-SGICAKSITKVCEKRVSTWDGKELV 82
Query: 89 IIDTPGLVEAGYVNYQALELIKGF--LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT 146
++DTPG+ + + I + L + LL L Y V+ + + + +
Sbjct: 83 VVDTPGIFDTEVPDADTQREITRYVALTSPGPHALLLVVPLGRYTVE--EHKATQKILDM 140
Query: 147 FGKQIWRKSLLVLT 160
FGKQ R +L+LT
Sbjct: 141 FGKQARRFMILLLT 154
>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1
Length = 305
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 29 KLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKG---- 83
K K+ L +L++GK G GKS+T NS++G + +F+S+ + RPV + KG
Sbjct: 95 KEKKLTPKRLQLLLVGKTGSGKSATGNSILGRQ-----AFESKISARPVTTTFQKGTREF 149
Query: 84 -GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKA 142
G L +IDTP + + I L + +L ++ Y + D+ + +
Sbjct: 150 EGKELEVIDTPDIFSPQNQPEATAKKICDLLASPGPHAVLLVIQVGRYTAE--DQAVARC 207
Query: 143 VTGTFGKQIWRKSLLVLTHAQ 163
+ FG I ++LV T +
Sbjct: 208 LQEIFGNTILAYTILVFTRKE 228
>sp|A9B567|DER_HERA2 GTPase Der OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM
785) GN=der PE=3 SV=1
Length = 455
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 31 KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNII 90
++E+ N+L I ++G+ VGKSS +N ++GE V V++ + + G + +I
Sbjct: 176 EEEDDNSLKIAIVGRPNVGKSSLLNKLVGEERVVVSNIPGTTRDSIDTKLTYKGIPITLI 235
Query: 91 DTPGL-----VEAGYVNYQALELIKGF 112
DT G+ +E G Y L +K
Sbjct: 236 DTAGIRRRGSIEQGIERYSVLRTMKAI 262
>sp|B0K8N3|DER_THEP3 GTPase Der OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=der PE=3 SV=1
Length = 439
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 23 LIELLSKLKQENVN----TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV 78
L E++ KL QE + T+ I V+GK VGKSS VN ++GE V V++ +
Sbjct: 158 LDEVVKKLPQEELEYTEETIKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDT 217
Query: 79 SRSKGGFTLNIIDTPGL 95
SK G +IDT G+
Sbjct: 218 PFSKDGKNYVLIDTAGI 234
>sp|Q3UM18|LSG1_MOUSE Large subunit GTPase 1 homolog OS=Mus musculus GN=Lsg1 PE=2 SV=2
Length = 644
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 20/105 (19%)
Query: 19 TQNKLIELLSKL---KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------F 68
++ +L+EL KL K+ LT+ ++G VGKSST+N+++G + V+V++ F
Sbjct: 351 SKQELLELFKKLHTGKKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHF 410
Query: 69 QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113
Q+ + P L + D PGLV +V+ +A + G L
Sbjct: 411 QTLYVEP----------GLCLCDCPGLVMPSFVSTKAEMICNGIL 445
>sp|C7LZP1|ERA_ACIFD GTPase Era OS=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM
15462 / NBRC 103882 / ICP) GN=era PE=3 SV=1
Length = 287
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98
+ V+G+ VGKSS VN++ GER V+ + R V V G L ++DTPG+ A
Sbjct: 15 VAVIGRTNVGKSSLVNALAGERATIVSRHPNTTRRSVRVISRVGDAELVLVDTPGIAAA 73
>sp|Q5BJT6|LSG1_RAT Large subunit GTPase 1 homolog OS=Rattus norvegicus GN=Lsg1 PE=2
SV=1
Length = 655
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 20/105 (19%)
Query: 19 TQNKLIELLSKL---KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------F 68
++ +L+EL KL K+ LT+ ++G VGKSST+N+++G + V+V++ F
Sbjct: 362 SKQELLELFKKLHTGKKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHF 421
Query: 69 QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113
Q+ + P L + D PGLV +V+ +A + G L
Sbjct: 422 QTLYVEP----------GLCLCDCPGLVMPSFVSTKAEMICSGIL 456
>sp|B1XLH8|DER_SYNP2 GTPase Der OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=der PE=3 SV=1
Length = 453
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 21 NKLIELLSKLKQ-ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS 79
+K+IE L + E T+ + ++G+ VGKSS +N++ GE+ V+ +
Sbjct: 159 DKVIEYLPTITDVEEDTTINVAIIGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDTI 218
Query: 80 RSKGGFTLNIIDTPGLVEAGYVNYQA--LELIKGFLLNKTIDVLLYA-DRLDAYRVDDL 135
+ G +IDT G+ V+Y A + + F + DV+L+ D LD DL
Sbjct: 219 IERNGQQYRLIDTAGIRRKKNVDYGAEFFSINRAFKAIRRADVVLFVIDVLDGVTEQDL 277
>sp|B8CWY9|DER_HALOH GTPase Der OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM
9562) GN=der PE=3 SV=1
Length = 438
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
+ + + ++GK VGKSS VN ++G+ V V+ + K G N+IDT GL
Sbjct: 176 DAIDVAIIGKPNVGKSSLVNYIVGQERVIVSDIPGTTRDAIDTLVEKNGHRYNLIDTAGL 235
Query: 96 VEAGYVN-----YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQI 139
+ V Y AL IK ++++ V++ D L+ V + D++I
Sbjct: 236 RKKSRVKEATEYYSALRTIKA--IDRSDGVIMMIDALEG--VTEQDKKI 280
>sp|B0K3E4|DER_THEPX GTPase Der OS=Thermoanaerobacter sp. (strain X514) GN=der PE=3 SV=1
Length = 439
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 23 LIELLSKLKQENVN----TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV 78
L E++ +L QE + T+ I V+GK VGKSS VN ++GE V V++ +
Sbjct: 158 LDEVVKRLPQEELEYTEETIKIAVIGKPNVGKSSLVNKILGEERVIVSNIPGTTRDAIDT 217
Query: 79 SRSKGGFTLNIIDTPGL 95
SK G +IDT G+
Sbjct: 218 PFSKDGKNYVLIDTAGI 234
>sp|Q46ZI7|DER_CUPPJ GTPase Der OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197)
GN=der PE=3 SV=1
Length = 447
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 29 KLKQENVNT---LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF 85
+L +E+ ++ + I ++G+ VGKS+ VN++IGE V + V +GG
Sbjct: 169 ELAEEDADSGKGVKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGK 228
Query: 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118
+IDT GL G V E I+ F + KT+
Sbjct: 229 PYTLIDTAGLRRRGKV----FEAIEKFSVVKTL 257
>sp|Q6KH82|MNME_MYCMO tRNA modification GTPase MnmE OS=Mycoplasma mobile (strain ATCC
43663 / 163K / NCTC 11711) GN=mnmE PE=3 SV=1
Length = 442
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
N L I ++GK VGKSS +N+++ E V + + S GF +I DT GL
Sbjct: 214 NGLKIAIVGKPNVGKSSLLNALLNEERAIVTNEAGTTRDVIEASFQIDGFLFSISDTAGL 273
Query: 96 VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQI-IKAVTGTFGKQIWRK 154
E N + L + K F + D++L+ + + +D D+QI IK+ + K + +K
Sbjct: 274 REVQN-NIENLGIQKTFETIEKSDIILHIIQPNEAE-NDFDKQIEIKSKNKIYLKILNKK 331
Query: 155 SLL 157
L+
Sbjct: 332 DLI 334
>sp|Q1LLJ5|DER_RALME GTPase Der OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 /
DSM 2839) GN=der PE=3 SV=1
Length = 447
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97
+ I ++G+ VGKS+ VN++IGE V + V +GG +IDT GL +
Sbjct: 181 VKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLRK 240
Query: 98 AGYVNYQALELIKGFLLNKTIDVLLYAD 125
G V E I+ F + KT+ + A+
Sbjct: 241 RGKV----FEAIEKFSVVKTLQSIADAN 264
>sp|B3R1J8|DER_CUPTR GTPase Der OS=Cupriavidus taiwanensis (strain R1 / LMG 19424)
GN=der PE=3 SV=1
Length = 447
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97
+ I ++G+ VGKS+ VN++IGE V + V +GG +IDT GL
Sbjct: 181 VKIAIVGRPNVGKSTLVNTLIGEERVIAFDMPGTTRDAIYVEFERGGKPYTLIDTAGLRR 240
Query: 98 AGYVNYQALELIKGFLLNKTIDVLLYAD 125
G V E I+ F + KT+ + A+
Sbjct: 241 RGKV----FEAIEKFSVVKTLQSIADAN 264
>sp|Q30TK8|DER_SULDN GTPase Der OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=der PE=3 SV=1
Length = 494
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 27 LSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT 86
+ + + + N + I ++G+ VGKSS +N+++GE V+S + P+ S
Sbjct: 224 IKEFDETDANHIKISIIGRTNVGKSSLLNALLGEERSVVSSVAGTTIDPIDESMEYKDKQ 283
Query: 87 LNIIDTPGLVEAGYV 101
L +DT GL G +
Sbjct: 284 LTFVDTAGLRRRGKI 298
>sp|Q2YDM7|LSG1_BOVIN Large subunit GTPase 1 homolog OS=Bos taurus GN=LSG1 PE=2 SV=1
Length = 652
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 20/105 (19%)
Query: 19 TQNKLIELLSKL---KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------F 68
++ +L+E+ +L K+ LT+ ++G VGKSST+N+++G + V+V++ F
Sbjct: 359 SKQELLEVFKQLHSGKKVKDGQLTVGLVGYPNVGKSSTINTILGNKKVSVSATPGHTKHF 418
Query: 69 QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113
Q+ + P L + D PGLV +V+ +A + G L
Sbjct: 419 QTLYVEP----------GLCLCDCPGLVMPSFVSTKAEMICSGIL 453
>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1
Length = 300
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
+L I+++GK G GKS+T N+++GE + + Q+ SR G L ++DTPGL
Sbjct: 8 SLRIVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQGRDLLVVDTPGL 67
Query: 96 VE 97
+
Sbjct: 68 FD 69
>sp|Q8K3L6|GIMA5_RAT GTPase IMAP family member 5 OS=Rattus norvegicus GN=Gimap5 PE=2
SV=1
Length = 326
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-------GF 85
E+ L IL++GK G GKS+T NS++ +F+S LR V+R+ G
Sbjct: 40 EDSGLLRILLVGKSGCGKSATGNSILRR-----PAFESR-LRGQSVTRTSQAEMGTWEGR 93
Query: 86 TLNIIDTPGLVEAGYVNYQALELIKG--FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAV 143
+ ++DTP + E+ N + I + VLL +L Y V+D ++ V
Sbjct: 94 SFLVVDTPPIFESKIQNQDMDKDIGNCYLMCAPGPHVLLLVTQLGRYTVEDA--MAVRMV 151
Query: 144 TGTFGKQIWRKSLLVLTHAQ 163
FG + R +++ TH +
Sbjct: 152 KQIFGVGVMRYMIVLFTHKE 171
>sp|B2SXS6|DER_BURPP GTPase Der OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
GN=der PE=3 SV=1
Length = 445
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 31 KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNII 90
+++ + I ++G+ VGKS+ +N+++GE V + V +GG +I
Sbjct: 173 EEKQTRGVKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLI 232
Query: 91 DTPGLVEAGYVNYQALELIKGFLLNKTI 118
DT GL G V E I+ F + KT+
Sbjct: 233 DTAGLRRRGKV----FEAIEKFSVVKTL 256
>sp|A5N451|MNME_CLOK5 tRNA modification GTPase MnmE OS=Clostridium kluyveri (strain ATCC
8527 / DSM 555 / NCIMB 10680) GN=mnmE PE=3 SV=1
Length = 459
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97
L+++++GK VGKSS +NS+I E V + + GG + I+DT G+ +
Sbjct: 224 LSVVIVGKPNVGKSSLLNSLIEENKAIVTDIPGTTRDVIEEYMNIGGIPIKIVDTAGIRK 283
Query: 98 A-GYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKS 155
V +E K + + +L+ LD+ + +D+ D++II V RK
Sbjct: 284 TDDIVEKIGVEKSKEKIDESDLVILM----LDSSKELDEEDKEIINYVN-------HRKY 332
Query: 156 LLVLTHAQLCPPDGLNYDVYCSKRSDALLKT-IRLGAGLGK 195
+++L + D ++ + C+ S ++KT I+ G GL K
Sbjct: 333 IILLNKTDI--GDKIDLNDICNLNSRFIIKTSIKNGEGLDK 371
>sp|Q74JL6|DER_LACJO GTPase Der OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 /
NCC 533) GN=der PE=3 SV=1
Length = 435
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 25 ELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG 84
E K Q ++ V+G+ VGKSS VN+++GE+ V V++ + + + + G
Sbjct: 162 EFGDKANQHEDGSIRFSVIGRPNVGKSSLVNAILGEQRVIVSNIEGTTRDAIDTTFTNDG 221
Query: 85 FTLNIIDTPGLVEAGYVNYQALE 107
I+DT G+ G V Y+ E
Sbjct: 222 QKYTIVDTAGIRRRGKV-YEKTE 243
>sp|Q7NS92|DER_CHRVO GTPase Der OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=der PE=3 SV=1
Length = 469
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 22 KLIELL-----SKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV 76
+L+EL+ ++++E+ V+G+ VGKS+ VN+++GE V +
Sbjct: 154 ELMELVLEGFPDEVEEEDSRHPKFAVIGRPNVGKSTLVNAILGEERVIAFDQAGTTRDSI 213
Query: 77 MVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 121
+ + G T IIDT G+ VN E+++ F + KT+ +
Sbjct: 214 YIDFEREGHTYTIIDTAGVRRRAKVN----EMLEKFSVIKTMKAI 254
>sp|B0TFW3|DER_HELMI GTPase Der OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=der PE=3 SV=1
Length = 442
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 31 KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNII 90
+ ++ +T+ I V+G+ VGKSS VN+++G+ V V+ + + + G +I
Sbjct: 171 EDDDPDTIKIAVIGRPNVGKSSLVNAILGQERVIVSDIPGTTRDAIDTAFDRDGKRYILI 230
Query: 91 DTPGLVEAGYVNYQALE---LIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGT 146
DT G+ G + +A+E +++ DV+L +DA + V + D++I
Sbjct: 231 DTAGMRRKGRIE-EAVERYSVMRSLRAIDRSDVVLMV--IDASQGVTEQDKKI-----AG 282
Query: 147 FGKQIWRKSLLVLTHAQLCPPD 168
+ + + +LVL L P D
Sbjct: 283 YAHEAGKACVLVLNKWDLVPKD 304
>sp|Q13X32|DER_BURXL GTPase Der OS=Burkholderia xenovorans (strain LB400) GN=der PE=3
SV=1
Length = 445
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97
+ I ++G+ VGKS+ +N+++GE V + V +GG +IDT GL
Sbjct: 180 VKIAIVGRPNVGKSTLINALVGEERVIAFDMPGTTRDSIYVDFERGGKPYTLIDTAGLRR 239
Query: 98 AGYVNYQALELIKGFLLNKTI 118
G V E I+ F + KT+
Sbjct: 240 RGKV----FEAIEKFSVVKTL 256
>sp|Q7VM29|DER_HAEDU GTPase Der OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724)
GN=der PE=3 SV=1
Length = 510
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 8 EWAGFQQFPSATQNKLIELLSKLKQENVNTLT-----ILVMGKGGVGKSSTVNSVIGERV 62
EW Q F + L L +EN ++ I ++G+ VGKS+ N ++GE
Sbjct: 187 EWN--QDFDFNNEEDTALLDEALDEENSESIADKNIKIAIIGRPNVGKSTLTNRILGEER 244
Query: 63 VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 102
V V + + + G IIDT G+ + G +N
Sbjct: 245 VVVYDMPGTTRDSIYIPMERDGQEYTIIDTAGVRKRGKIN 284
>sp|Q9H089|LSG1_HUMAN Large subunit GTPase 1 homolog OS=Homo sapiens GN=LSG1 PE=1 SV=2
Length = 658
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 19 TQNKLIELLSKL---KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------F 68
++ +L+EL +L ++ LT+ ++G VGKSST+N+++G + V+V++ F
Sbjct: 365 SKQELLELFKELHTGRKVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHF 424
Query: 69 QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113
Q+ + P L + D PGLV +V+ +A G L
Sbjct: 425 QTLYVEP----------GLCLCDCPGLVMPSFVSTKAEMTCSGIL 459
>sp|B8F4X7|DER_HAEPS GTPase Der OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=der
PE=3 SV=1
Length = 504
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 8 EWAGFQQFPSATQNKLIELLSKLKQENVN--TLTILVMGKGGVGKSSTVNSVIGERVVTV 65
EW F + L++ + QE + + I ++G+ VGKS+ N ++GE V V
Sbjct: 184 EWDSDFDFDNEEDTALLDEALEEDQEETDDKNIKIAIVGRPNVGKSTLTNRILGEERVVV 243
Query: 66 NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 102
+ + + G IIDT G+ + G V+
Sbjct: 244 YDMPGTTRDSIYIPMERDGQQYTIIDTAGVRKRGKVH 280
>sp|P74120|DER_SYNY3 GTPase Der OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=der
PE=3 SV=1
Length = 452
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 21 NKLIELLSKLKQE-NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS 79
+ L+E L ++E + + + ++G+ VGKSS +N++ GE+ V+ + +
Sbjct: 159 DALLEYLPAPQEEPEEDEIKVAIVGRPNVGKSSLLNALTGEQRAIVSPISGTTRDAIDMV 218
Query: 80 RSKGGFTLNIIDTPGLVEAGYVNYQA--LELIKGFLLNKTIDVLLYA-DRLDAYRVDDL 135
+ G +IDT G+ V+Y A + + F + DV+L+ D LD DL
Sbjct: 219 VERNGQKYRLIDTAGIRRKKNVDYGAEFFGINRAFKAIRRADVVLFVLDVLDGVTEQDL 277
>sp|A4J3P1|DER_DESRM GTPase Der OS=Desulfotomaculum reducens (strain MI-1) GN=der PE=3
SV=1
Length = 439
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
+T+ I V+G+ VGKSS VN+++GE V V++ + S K G ++DT G+
Sbjct: 173 DTIRIAVIGRPNVGKSSLVNTILGEERVIVSNIPGTTRDAIDSSFEKNGKNYVLVDTAGM 232
>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1
Length = 353
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 33/172 (19%)
Query: 39 TILVMGKGGVGKSSTVNSVIGERV---------VTVNSFQSEALRPVMVSRSKGGFTLNI 89
I+++G+ G GKS+T NS++ +V VT+ +A+ P G LN+
Sbjct: 44 NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTP-------EGPILNV 96
Query: 90 IDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYAD-RLDAY--------RVDDLDRQII 140
IDTPGL + L + F+ + + L AD L A R+ + ++
Sbjct: 97 IDTPGLFD--------LSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVL 148
Query: 141 KAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAG 192
+ FG +I ++V T + DG+ + Y LK + + G
Sbjct: 149 STLQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCG 200
>sp|Q7VDI8|DER_PROMA GTPase Der OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=der PE=3 SV=1
Length = 456
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 21 NKLIELLS--KLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV 78
++LI +L +L ++ + + ++G+ VGKSS +N++ GE+ V++ + +
Sbjct: 159 DRLISILPPKELIKDEEEPIQVAIVGRPNVGKSSLLNAICGEKRAIVSAIRGTTRDTIDT 218
Query: 79 SRSKGGFTLNIIDTPGLVEAGYVNY 103
S + G +IDT G+ VNY
Sbjct: 219 SIVREGKLWKLIDTAGIRRRKSVNY 243
>sp|Q73AZ1|DER_BACC1 GTPase Der OS=Bacillus cereus (strain ATCC 10987) GN=der PE=3 SV=1
Length = 436
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
>sp|Q47WC5|DER_COLP3 GTPase Der OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
GN=der PE=3 SV=1
Length = 498
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 19 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV 78
T+ +L + L QEN + + + ++G+ VGKS+ N ++GE V V V +
Sbjct: 195 TEEELAKKLEDEPQEN-DKIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSVYI 253
Query: 79 SRSKGGFTLNIIDTPGL 95
+ G +IDT G+
Sbjct: 254 PMERNGREYTLIDTAGI 270
>sp|Q6HL51|DER_BACHK GTPase Der OS=Bacillus thuringiensis subsp. konkukian (strain
97-27) GN=der PE=3 SV=1
Length = 436
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
>sp|Q63DM8|DER_BACCZ GTPase Der OS=Bacillus cereus (strain ZK / E33L) GN=der PE=3 SV=1
Length = 436
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
>sp|Q81FR5|DER_BACCR GTPase Der OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=der
PE=3 SV=1
Length = 436
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 5 LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT 64
LL E A Q FP ++ E +T+ ++G+ VGKSS VN+++G+ V
Sbjct: 155 LLDEAA--QHFPKIEEDGYDE----------DTIRFSLIGRPNVGKSSLVNALLGQERVI 202
Query: 65 VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107
V++ V SK G IIDT G+ + G V Y++ E
Sbjct: 203 VSNVAGTTRDAVDTPYSKDGKDYVIIDTAGMRKKGKV-YESTE 244
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95
I ++G+ VGKS+ N ++GERV V + + NIIDT G+
Sbjct: 6 IAIVGRPNVGKSTIFNRIVGERVSIVEDIPGVTRDRIYSAGEWLNHEFNIIDTGGI 61
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,055,787
Number of Sequences: 539616
Number of extensions: 3520337
Number of successful extensions: 14989
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 603
Number of HSP's that attempted gapping in prelim test: 13948
Number of HSP's gapped (non-prelim): 1507
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)