Query 026593
Match_columns 236
No_of_seqs 149 out of 1847
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 10:01:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00991 3a0901s02IAP34 GTP-b 100.0 3.4E-40 7.4E-45 273.3 20.9 232 1-232 1-233 (313)
2 cd01853 Toc34_like Toc34-like 100.0 5E-34 1.1E-38 233.4 19.7 225 7-232 1-229 (249)
3 PF04548 AIG1: AIG1 family; I 100.0 3E-31 6.5E-36 213.1 14.6 187 38-228 1-206 (212)
4 TIGR00993 3a0901s04IAP86 chlor 100.0 3.3E-30 7.2E-35 229.2 20.6 209 24-232 101-321 (763)
5 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 7.5E-28 1.6E-32 191.2 19.1 179 38-220 1-196 (196)
6 COG3596 Predicted GTPase [Gene 99.8 3.8E-20 8.3E-25 149.2 13.1 149 11-165 13-161 (296)
7 PF02421 FeoB_N: Ferrous iron 99.8 2.8E-19 6E-24 135.7 10.5 125 38-172 1-125 (156)
8 PF01926 MMR_HSR1: 50S ribosom 99.8 6.4E-18 1.4E-22 122.9 13.6 114 39-161 1-116 (116)
9 COG1159 Era GTPase [General fu 99.8 8.7E-18 1.9E-22 137.3 12.9 124 36-167 5-129 (298)
10 COG1084 Predicted GTPase [Gene 99.8 6.8E-18 1.5E-22 139.2 12.2 136 24-165 155-293 (346)
11 COG1160 Predicted GTPases [Gen 99.8 2.4E-18 5.2E-23 147.8 9.6 162 7-176 148-313 (444)
12 COG1160 Predicted GTPases [Gen 99.8 1.4E-17 3.1E-22 143.1 13.0 119 38-165 4-125 (444)
13 TIGR00436 era GTP-binding prot 99.7 1.7E-16 3.7E-21 132.1 13.7 118 39-165 2-120 (270)
14 cd01894 EngA1 EngA1 subfamily. 99.7 2.2E-16 4.7E-21 120.0 12.6 117 41-165 1-118 (157)
15 COG0486 ThdF Predicted GTPase 99.7 3.3E-16 7.2E-21 135.0 14.9 123 35-167 215-339 (454)
16 cd01895 EngA2 EngA2 subfamily. 99.7 8.9E-16 1.9E-20 118.3 15.7 125 36-166 1-127 (174)
17 cd04163 Era Era subfamily. Er 99.7 6.3E-16 1.4E-20 118.1 14.6 122 36-165 2-124 (168)
18 PRK15494 era GTPase Era; Provi 99.7 4.1E-16 9E-21 133.6 14.6 122 36-165 51-173 (339)
19 TIGR03598 GTPase_YsxC ribosome 99.7 1.4E-15 3E-20 119.0 16.4 121 36-165 17-142 (179)
20 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.1E-15 2.3E-20 116.1 15.0 119 38-166 2-121 (157)
21 cd01898 Obg Obg subfamily. Th 99.7 4.7E-16 1E-20 120.1 13.1 120 39-165 2-127 (170)
22 PRK03003 GTP-binding protein D 99.7 5.3E-16 1.2E-20 138.6 14.8 124 36-165 210-335 (472)
23 PRK00089 era GTPase Era; Revie 99.7 6.8E-16 1.5E-20 129.9 14.5 122 36-165 4-126 (292)
24 TIGR03594 GTPase_EngA ribosome 99.7 5.5E-16 1.2E-20 137.1 14.3 124 36-165 171-296 (429)
25 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.6E-15 3.4E-20 133.9 17.0 122 35-165 201-323 (442)
26 cd01897 NOG NOG1 is a nucleola 99.7 1.1E-15 2.4E-20 117.8 14.2 122 38-165 1-126 (168)
27 TIGR03156 GTP_HflX GTP-binding 99.7 1.5E-15 3.2E-20 130.5 15.9 125 36-165 188-314 (351)
28 cd01850 CDC_Septin CDC/Septin. 99.7 2E-15 4.3E-20 125.8 15.1 186 36-233 3-238 (276)
29 PRK05291 trmE tRNA modificatio 99.7 2.2E-15 4.7E-20 133.6 16.1 122 35-166 213-335 (449)
30 cd01878 HflX HflX subfamily. 99.7 3.7E-15 8.1E-20 118.8 15.7 124 37-165 41-166 (204)
31 cd04104 p47_IIGP_like p47 (47- 99.7 2E-15 4.3E-20 120.0 13.8 116 37-165 1-120 (197)
32 TIGR03594 GTPase_EngA ribosome 99.7 2.3E-15 4.9E-20 133.2 15.6 120 39-166 1-121 (429)
33 cd04140 ARHI_like ARHI subfami 99.7 1.8E-15 3.9E-20 116.6 13.1 118 38-166 2-122 (165)
34 PRK03003 GTP-binding protein D 99.7 2.6E-15 5.7E-20 134.1 15.9 124 34-165 35-159 (472)
35 cd04136 Rap_like Rap-like subf 99.7 2.5E-15 5.5E-20 115.1 12.6 116 38-166 2-120 (163)
36 cd04119 RJL RJL (RabJ-Like) su 99.7 2.2E-15 4.7E-20 115.7 12.2 117 38-165 1-123 (168)
37 PRK00093 GTP-binding protein D 99.6 2.6E-15 5.7E-20 133.0 14.2 124 36-165 172-297 (435)
38 PRK00093 GTP-binding protein D 99.6 4.1E-15 8.8E-20 131.8 15.1 120 38-165 2-122 (435)
39 cd01879 FeoB Ferrous iron tran 99.6 4.1E-15 9E-20 113.2 12.9 115 42-166 1-115 (158)
40 cd01864 Rab19 Rab19 subfamily. 99.6 3.2E-15 6.8E-20 115.1 11.8 118 37-167 3-123 (165)
41 cd04145 M_R_Ras_like M-Ras/R-R 99.6 5.7E-15 1.2E-19 113.2 13.1 117 37-166 2-121 (164)
42 cd01861 Rab6 Rab6 subfamily. 99.6 4.3E-15 9.3E-20 113.6 12.3 115 38-165 1-118 (161)
43 COG0218 Predicted GTPase [Gene 99.6 8.6E-15 1.9E-19 113.8 13.8 120 36-165 23-148 (200)
44 KOG0084 GTPase Rab1/YPT1, smal 99.6 2.9E-15 6.2E-20 115.1 10.5 125 37-174 9-136 (205)
45 PRK12299 obgE GTPase CgtA; Rev 99.6 1E-14 2.3E-19 124.4 14.9 125 38-165 159-284 (335)
46 cd00157 Rho Rho (Ras homology) 99.6 2.6E-15 5.7E-20 115.9 10.2 115 38-166 1-118 (171)
47 cd04175 Rap1 Rap1 subgroup. T 99.6 9.3E-15 2E-19 112.3 13.1 117 37-166 1-120 (164)
48 smart00173 RAS Ras subfamily o 99.6 8.3E-15 1.8E-19 112.5 12.6 116 38-166 1-119 (164)
49 PRK09518 bifunctional cytidyla 99.6 8.4E-15 1.8E-19 136.7 15.0 124 36-165 449-574 (712)
50 cd04142 RRP22 RRP22 subfamily. 99.6 2.2E-14 4.7E-19 114.1 15.2 124 38-165 1-129 (198)
51 cd04106 Rab23_lke Rab23-like s 99.6 5.5E-15 1.2E-19 113.1 11.4 115 38-166 1-120 (162)
52 cd01867 Rab8_Rab10_Rab13_like 99.6 8.7E-15 1.9E-19 113.0 12.5 117 37-166 3-122 (167)
53 cd01874 Cdc42 Cdc42 subfamily. 99.6 6.3E-15 1.4E-19 114.9 11.7 114 38-165 2-118 (175)
54 cd04112 Rab26 Rab26 subfamily. 99.6 9.1E-15 2E-19 115.5 12.6 116 38-165 1-119 (191)
55 cd04131 Rnd Rnd subfamily. Th 99.6 5.8E-15 1.3E-19 115.4 11.3 114 38-165 2-118 (178)
56 cd01868 Rab11_like Rab11-like. 99.6 8.2E-15 1.8E-19 112.7 12.0 116 38-166 4-122 (165)
57 cd01881 Obg_like The Obg-like 99.6 2.8E-15 6.1E-20 116.2 9.4 121 42-165 1-133 (176)
58 cd01865 Rab3 Rab3 subfamily. 99.6 9.5E-15 2.1E-19 112.6 12.3 117 38-167 2-121 (165)
59 PTZ00369 Ras-like protein; Pro 99.6 1.3E-14 2.8E-19 114.5 13.2 117 36-165 4-123 (189)
60 cd01866 Rab2 Rab2 subfamily. 99.6 7.4E-15 1.6E-19 113.5 11.6 117 38-167 5-124 (168)
61 cd04176 Rap2 Rap2 subgroup. T 99.6 1.5E-14 3.3E-19 110.9 13.3 116 37-165 1-119 (163)
62 cd04144 Ras2 Ras2 subfamily. 99.6 1.2E-14 2.6E-19 114.8 13.0 116 39-166 1-120 (190)
63 PRK12298 obgE GTPase CgtA; Rev 99.6 1.6E-14 3.4E-19 125.6 14.8 124 39-165 161-288 (390)
64 cd04120 Rab12 Rab12 subfamily. 99.6 1.2E-14 2.6E-19 115.8 12.7 115 38-166 1-119 (202)
65 cd04138 H_N_K_Ras_like H-Ras/N 99.6 1.3E-14 2.9E-19 110.7 12.4 115 38-165 2-119 (162)
66 cd04113 Rab4 Rab4 subfamily. 99.6 1.3E-14 2.8E-19 111.1 12.2 116 38-166 1-119 (161)
67 cd01860 Rab5_related Rab5-rela 99.6 9.4E-15 2E-19 112.0 11.5 117 37-166 1-120 (163)
68 TIGR02729 Obg_CgtA Obg family 99.6 1.9E-14 4.1E-19 122.6 14.3 125 38-165 158-286 (329)
69 cd04134 Rho3 Rho3 subfamily. 99.6 5.5E-15 1.2E-19 116.6 10.3 113 39-165 2-117 (189)
70 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 2.5E-14 5.4E-19 111.2 13.6 116 37-165 2-120 (172)
71 cd04133 Rop_like Rop subfamily 99.6 1.4E-14 3.1E-19 113.0 12.2 115 38-166 2-119 (176)
72 cd04154 Arl2 Arl2 subfamily. 99.6 6.1E-15 1.3E-19 114.5 10.1 115 36-165 13-128 (173)
73 cd04124 RabL2 RabL2 subfamily. 99.6 1.3E-14 2.9E-19 111.4 11.9 115 38-165 1-117 (161)
74 cd04122 Rab14 Rab14 subfamily. 99.6 1.6E-14 3.6E-19 111.3 12.4 116 38-167 3-122 (166)
75 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 9.4E-15 2E-19 114.6 11.2 116 36-165 4-122 (182)
76 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 1.9E-14 4.1E-19 110.8 12.7 117 38-167 3-122 (166)
77 cd04117 Rab15 Rab15 subfamily. 99.6 2.5E-14 5.4E-19 109.9 13.2 117 38-167 1-120 (161)
78 cd04110 Rab35 Rab35 subfamily. 99.6 2.3E-14 5.1E-19 113.9 13.2 117 36-166 5-124 (199)
79 cd04109 Rab28 Rab28 subfamily. 99.6 2.1E-14 4.5E-19 115.6 13.1 119 38-167 1-124 (215)
80 cd01875 RhoG RhoG subfamily. 99.6 7.6E-15 1.6E-19 116.0 10.2 116 36-165 2-120 (191)
81 PLN03118 Rab family protein; P 99.6 2.1E-14 4.5E-19 115.3 12.9 119 36-166 13-134 (211)
82 smart00174 RHO Rho (Ras homolo 99.6 6.4E-15 1.4E-19 114.2 9.6 112 40-165 1-115 (174)
83 cd00154 Rab Rab family. Rab G 99.6 3.5E-14 7.6E-19 107.5 13.4 115 38-165 1-118 (159)
84 smart00175 RAB Rab subfamily o 99.6 1.8E-14 3.9E-19 110.3 11.8 116 38-166 1-119 (164)
85 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 3E-14 6.6E-19 113.4 13.4 118 38-166 1-124 (201)
86 cd04121 Rab40 Rab40 subfamily. 99.6 2.1E-14 4.5E-19 113.3 12.3 116 36-166 5-124 (189)
87 cd04149 Arf6 Arf6 subfamily. 99.6 8.9E-15 1.9E-19 113.3 10.1 115 36-165 8-123 (168)
88 PRK11058 GTPase HflX; Provisio 99.6 5.2E-14 1.1E-18 123.7 16.1 122 38-165 198-322 (426)
89 cd04177 RSR1 RSR1 subgroup. R 99.6 3.2E-14 7E-19 109.9 13.2 118 37-167 1-121 (168)
90 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 1.2E-14 2.6E-19 118.0 11.1 118 34-165 10-130 (232)
91 cd01893 Miro1 Miro1 subfamily. 99.6 1.5E-14 3.3E-19 111.6 11.0 114 38-166 1-117 (166)
92 cd04127 Rab27A Rab27a subfamil 99.6 1.8E-14 3.9E-19 112.4 11.4 118 37-166 4-134 (180)
93 cd00877 Ran Ran (Ras-related n 99.6 1.8E-14 3.8E-19 111.4 11.2 114 38-165 1-117 (166)
94 cd04171 SelB SelB subfamily. 99.6 9.3E-14 2E-18 106.3 15.0 113 39-165 2-117 (164)
95 cd04146 RERG_RasL11_like RERG/ 99.6 3E-14 6.6E-19 109.6 12.0 116 39-165 1-119 (165)
96 cd00880 Era_like Era (E. coli 99.6 4.7E-14 1E-18 106.5 12.8 116 42-165 1-117 (163)
97 PF00735 Septin: Septin; Inte 99.6 3.7E-14 8.1E-19 118.2 13.3 123 37-165 4-155 (281)
98 PRK12297 obgE GTPase CgtA; Rev 99.6 4.2E-14 9.1E-19 123.7 14.2 124 39-165 160-287 (424)
99 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 2E-14 4.3E-19 116.1 11.3 114 38-165 2-118 (222)
100 cd01871 Rac1_like Rac1-like su 99.6 1.6E-14 3.5E-19 112.5 10.4 114 38-165 2-118 (174)
101 cd04118 Rab24 Rab24 subfamily. 99.6 2.7E-14 5.9E-19 112.8 11.9 114 38-165 1-118 (193)
102 cd01862 Rab7 Rab7 subfamily. 99.6 4.5E-14 9.7E-19 109.1 12.8 119 38-166 1-123 (172)
103 cd04123 Rab21 Rab21 subfamily. 99.6 4.4E-14 9.6E-19 107.8 12.7 116 38-166 1-119 (162)
104 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.5E-14 5.3E-19 111.0 11.3 116 39-166 2-120 (170)
105 PF08477 Miro: Miro-like prote 99.6 6.1E-15 1.3E-19 107.4 7.5 115 39-163 1-119 (119)
106 smart00177 ARF ARF-like small 99.6 3.5E-14 7.5E-19 110.7 12.1 116 35-165 11-127 (175)
107 cd04125 RabA_like RabA-like su 99.6 2.2E-14 4.8E-19 112.9 10.9 115 38-165 1-118 (188)
108 PRK09518 bifunctional cytidyla 99.6 5.3E-14 1.1E-18 131.4 15.3 120 38-165 276-396 (712)
109 cd04132 Rho4_like Rho4-like su 99.6 1.4E-14 3E-19 113.8 9.8 114 38-165 1-118 (187)
110 cd04126 Rab20 Rab20 subfamily. 99.6 6.1E-14 1.3E-18 113.1 13.5 113 38-166 1-114 (220)
111 cd01863 Rab18 Rab18 subfamily. 99.6 3E-14 6.5E-19 109.0 11.2 116 38-165 1-119 (161)
112 cd04130 Wrch_1 Wrch-1 subfamil 99.6 2.6E-14 5.7E-19 111.0 10.7 114 38-165 1-117 (173)
113 PF05049 IIGP: Interferon-indu 99.6 1.6E-14 3.5E-19 123.4 10.2 119 33-164 31-153 (376)
114 cd04135 Tc10 TC10 subfamily. 99.6 2E-14 4.3E-19 111.5 9.9 114 38-165 1-117 (174)
115 cd04115 Rab33B_Rab33A Rab33B/R 99.6 5.4E-14 1.2E-18 108.9 12.3 119 37-166 2-123 (170)
116 PLN03071 GTP-binding nuclear p 99.6 3.2E-14 7E-19 114.9 11.2 117 35-165 11-130 (219)
117 cd04158 ARD1 ARD1 subfamily. 99.6 6.8E-14 1.5E-18 108.3 12.4 112 39-165 1-113 (169)
118 PTZ00133 ADP-ribosylation fact 99.6 4.8E-14 1E-18 110.6 11.6 117 34-165 14-131 (182)
119 cd04143 Rhes_like Rhes_like su 99.6 7.4E-14 1.6E-18 114.6 13.2 117 38-166 1-127 (247)
120 smart00178 SAR Sar1p-like memb 99.6 2.8E-13 6.1E-18 106.4 15.9 115 36-165 16-131 (184)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.6 3.9E-14 8.4E-19 109.0 10.7 116 39-165 1-120 (167)
122 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 1.3E-14 2.9E-19 111.2 7.8 132 35-177 20-153 (221)
123 cd04101 RabL4 RabL4 (Rab-like4 99.6 5.1E-14 1.1E-18 108.0 11.2 115 38-165 1-120 (164)
124 KOG0092 GTPase Rab5/YPT51 and 99.6 2.5E-14 5.4E-19 109.6 9.2 127 36-175 4-133 (200)
125 PLN03110 Rab GTPase; Provision 99.6 7.6E-14 1.6E-18 112.5 12.5 119 36-166 11-131 (216)
126 cd04139 RalA_RalB RalA/RalB su 99.5 1E-13 2.2E-18 106.1 12.5 115 38-165 1-118 (164)
127 cd04116 Rab9 Rab9 subfamily. 99.5 5.7E-14 1.2E-18 108.6 11.2 119 36-165 4-127 (170)
128 cd04157 Arl6 Arl6 subfamily. 99.5 5.1E-14 1.1E-18 107.7 10.7 115 39-165 1-117 (162)
129 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 4.9E-14 1.1E-18 108.4 10.6 111 39-165 2-115 (168)
130 PLN00223 ADP-ribosylation fact 99.5 7.4E-14 1.6E-18 109.5 11.6 114 35-165 15-131 (181)
131 cd04102 RabL3 RabL3 (Rab-like3 99.5 1.1E-13 2.5E-18 110.1 12.7 118 38-166 1-143 (202)
132 PRK00454 engB GTP-binding prot 99.5 5.3E-13 1.2E-17 105.5 16.6 121 36-165 23-148 (196)
133 cd04150 Arf1_5_like Arf1-Arf5- 99.5 4.5E-14 9.7E-19 108.3 10.1 113 38-165 1-114 (159)
134 PRK09554 feoB ferrous iron tra 99.5 1.3E-13 2.7E-18 128.9 14.9 122 36-166 2-126 (772)
135 PRK04213 GTP-binding protein; 99.5 2E-13 4.3E-18 108.5 14.1 120 36-165 8-143 (201)
136 cd00876 Ras Ras family. The R 99.5 9E-14 1.9E-18 105.8 11.3 116 39-166 1-118 (160)
137 cd01870 RhoA_like RhoA-like su 99.5 6E-14 1.3E-18 108.9 10.3 114 38-165 2-118 (175)
138 KOG0078 GTP-binding protein SE 99.5 1.2E-13 2.6E-18 107.6 11.7 125 37-173 12-138 (207)
139 COG0370 FeoB Fe2+ transport sy 99.5 1.3E-13 2.9E-18 123.8 13.7 126 36-173 2-129 (653)
140 cd01892 Miro2 Miro2 subfamily. 99.5 4.2E-13 9.1E-18 104.0 14.9 117 35-165 2-121 (169)
141 PRK12296 obgE GTPase CgtA; Rev 99.5 1.9E-13 4.2E-18 121.2 14.6 125 38-165 160-297 (500)
142 cd00881 GTP_translation_factor 99.5 1.1E-13 2.4E-18 108.3 11.7 112 39-165 1-127 (189)
143 cd04111 Rab39 Rab39 subfamily. 99.5 1.2E-13 2.6E-18 110.9 12.1 118 37-166 2-123 (211)
144 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 8.6E-14 1.9E-18 109.2 11.0 117 36-165 2-122 (183)
145 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 9E-14 1.9E-18 108.2 11.0 115 36-165 14-129 (174)
146 TIGR00231 small_GTP small GTP- 99.5 2.3E-13 4.9E-18 102.6 12.9 117 37-165 1-121 (161)
147 cd04148 RGK RGK subfamily. Th 99.5 2.1E-13 4.5E-18 110.3 13.3 117 38-167 1-121 (221)
148 cd04155 Arl3 Arl3 subfamily. 99.5 5.6E-13 1.2E-17 103.2 15.3 115 36-165 13-128 (173)
149 cd04114 Rab30 Rab30 subfamily. 99.5 1.6E-13 3.4E-18 105.8 12.1 118 36-166 6-126 (169)
150 cd00878 Arf_Arl Arf (ADP-ribos 99.5 1.5E-13 3.3E-18 104.8 11.8 112 39-165 1-113 (158)
151 KOG1191 Mitochondrial GTPase [ 99.5 2.9E-13 6.3E-18 117.0 14.6 133 34-167 265-404 (531)
152 cd04151 Arl1 Arl1 subfamily. 99.5 5.4E-14 1.2E-18 107.5 9.1 112 39-165 1-113 (158)
153 cd01891 TypA_BipA TypA (tyrosi 99.5 1.3E-13 2.7E-18 109.2 11.5 113 38-165 3-130 (194)
154 cd04137 RheB Rheb (Ras Homolog 99.5 1.8E-13 3.9E-18 106.8 11.6 115 38-165 2-119 (180)
155 cd04161 Arl2l1_Arl13_like Arl2 99.5 2.2E-13 4.7E-18 105.3 11.8 112 39-165 1-113 (167)
156 cd04156 ARLTS1 ARLTS1 subfamil 99.5 9.8E-14 2.1E-18 106.0 9.7 112 39-165 1-114 (160)
157 PLN03108 Rab family protein; P 99.5 3.3E-13 7.1E-18 108.3 13.0 118 37-167 6-126 (210)
158 KOG1490 GTP-binding protein CR 99.5 3.2E-14 7E-19 123.0 7.4 161 1-171 137-300 (620)
159 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 2.4E-13 5.1E-18 104.9 11.5 111 39-165 1-112 (164)
160 cd04147 Ras_dva Ras-dva subfam 99.5 2E-13 4.3E-18 108.5 11.3 115 39-166 1-118 (198)
161 cd00879 Sar1 Sar1 subfamily. 99.5 4.5E-13 9.7E-18 105.5 13.1 116 35-165 17-133 (190)
162 KOG0087 GTPase Rab11/YPT3, sma 99.5 4.6E-14 1E-18 109.6 7.1 125 37-173 14-140 (222)
163 KOG1547 Septin CDC10 and relat 99.5 1.5E-12 3.3E-17 103.3 15.4 144 8-165 25-197 (336)
164 cd04166 CysN_ATPS CysN_ATPS su 99.5 2.6E-13 5.7E-18 108.7 11.4 113 39-165 1-143 (208)
165 cd01896 DRG The developmentall 99.5 1E-12 2.2E-17 107.1 14.5 86 39-127 2-87 (233)
166 cd04128 Spg1 Spg1p. Spg1p (se 99.5 3.2E-13 6.9E-18 106.0 11.0 114 38-165 1-117 (182)
167 KOG0080 GTPase Rab18, small G 99.5 7.6E-14 1.7E-18 103.8 6.8 128 37-176 11-141 (209)
168 PF00009 GTP_EFTU: Elongation 99.5 1.5E-12 3.2E-17 102.7 14.5 115 36-165 2-135 (188)
169 cd04105 SR_beta Signal recogni 99.5 6.2E-13 1.3E-17 106.1 12.5 117 39-166 2-123 (203)
170 cd01884 EF_Tu EF-Tu subfamily. 99.5 1.5E-12 3.2E-17 103.2 14.5 115 37-165 2-131 (195)
171 COG5019 CDC3 Septin family pro 99.5 1.7E-12 3.6E-17 109.1 15.4 204 9-232 3-257 (373)
172 PF00071 Ras: Ras family; Int 99.5 1.8E-13 4E-18 104.7 8.9 115 39-166 1-118 (162)
173 cd01889 SelB_euk SelB subfamil 99.5 1.7E-12 3.7E-17 102.6 14.6 113 38-165 1-133 (192)
174 KOG2655 Septin family protein 99.5 1.7E-12 3.8E-17 109.7 15.2 142 10-165 2-171 (366)
175 cd01876 YihA_EngB The YihA (En 99.5 2.9E-12 6.3E-17 97.9 15.2 118 39-165 1-123 (170)
176 cd04129 Rho2 Rho2 subfamily. 99.5 4.6E-13 1E-17 105.4 10.9 114 38-165 2-118 (187)
177 PRK09866 hypothetical protein; 99.5 3.9E-12 8.5E-17 114.3 18.0 73 85-165 230-302 (741)
178 cd04159 Arl10_like Arl10-like 99.5 6.1E-13 1.3E-17 100.7 11.0 112 40-165 2-114 (159)
179 KOG0079 GTP-binding protein H- 99.5 1.1E-13 2.3E-18 101.6 6.0 116 38-166 9-126 (198)
180 KOG0098 GTPase Rab2, small G p 99.5 4.6E-13 1E-17 102.1 9.5 125 36-171 5-130 (216)
181 cd04168 TetM_like Tet(M)-like 99.5 1.2E-12 2.5E-17 106.9 12.4 112 39-165 1-129 (237)
182 cd01890 LepA LepA subfamily. 99.5 8.3E-13 1.8E-17 102.8 11.0 112 39-165 2-132 (179)
183 PLN00023 GTP-binding protein; 99.5 1.1E-12 2.4E-17 110.2 12.3 122 35-166 19-165 (334)
184 PF00350 Dynamin_N: Dynamin fa 99.4 7.5E-13 1.6E-17 102.2 10.3 113 40-162 1-168 (168)
185 cd01886 EF-G Elongation factor 99.4 6.6E-13 1.4E-17 110.3 10.4 112 39-165 1-129 (270)
186 CHL00071 tufA elongation facto 99.4 2.7E-12 5.8E-17 112.8 13.9 120 31-165 6-141 (409)
187 cd04103 Centaurin_gamma Centau 99.4 2.7E-12 5.7E-17 98.4 11.7 109 38-165 1-112 (158)
188 PRK12317 elongation factor 1-a 99.4 2E-12 4.4E-17 114.3 12.6 119 34-165 3-152 (425)
189 KOG0095 GTPase Rab30, small G 99.4 4E-12 8.6E-17 93.6 11.8 118 38-167 8-127 (213)
190 KOG1423 Ras-like GTPase ERA [C 99.4 3E-12 6.5E-17 105.0 12.4 123 36-165 71-198 (379)
191 TIGR00437 feoB ferrous iron tr 99.4 2.4E-12 5.2E-17 117.6 12.6 113 44-166 1-113 (591)
192 cd01873 RhoBTB RhoBTB subfamil 99.4 1.6E-12 3.5E-17 103.1 9.9 115 37-165 2-133 (195)
193 KOG0093 GTPase Rab3, small G p 99.4 2.3E-12 5.1E-17 94.6 9.7 146 38-196 22-170 (193)
194 COG1100 GTPase SAR1 and relate 99.4 1.8E-12 3.9E-17 104.3 9.8 120 36-166 4-125 (219)
195 TIGR02528 EutP ethanolamine ut 99.4 1.9E-12 4.1E-17 97.1 9.1 100 39-165 2-101 (142)
196 TIGR00487 IF-2 translation ini 99.4 4.5E-12 9.8E-17 115.4 13.3 114 36-165 86-200 (587)
197 cd04169 RF3 RF3 subfamily. Pe 99.4 8.8E-12 1.9E-16 103.5 13.7 113 38-165 3-136 (267)
198 PRK05306 infB translation init 99.4 5.1E-12 1.1E-16 117.9 13.5 114 36-165 289-402 (787)
199 smart00176 RAN Ran (Ras-relate 99.4 2.4E-12 5.3E-17 102.4 9.4 109 43-165 1-112 (200)
200 KOG1707 Predicted Ras related/ 99.4 5.5E-12 1.2E-16 111.1 12.1 131 33-174 5-137 (625)
201 KOG0395 Ras-related GTPase [Ge 99.4 4.7E-12 1E-16 100.3 10.7 126 36-174 2-130 (196)
202 PF00025 Arf: ADP-ribosylation 99.4 4.3E-12 9.2E-17 99.0 10.2 124 26-165 4-128 (175)
203 PRK15467 ethanolamine utilizat 99.4 3.5E-12 7.6E-17 97.8 9.3 102 39-165 3-104 (158)
204 cd04170 EF-G_bact Elongation f 99.4 8E-12 1.7E-16 103.9 12.1 112 39-165 1-129 (268)
205 PLN03126 Elongation factor Tu; 99.3 4.2E-11 9.1E-16 106.7 16.2 119 33-165 77-210 (478)
206 PRK12735 elongation factor Tu; 99.3 3.5E-11 7.6E-16 105.4 15.5 119 32-165 7-141 (396)
207 PTZ00132 GTP-binding nuclear p 99.3 1.3E-11 2.8E-16 99.3 11.8 118 34-165 6-126 (215)
208 cd00882 Ras_like_GTPase Ras-li 99.3 6.3E-12 1.4E-16 93.6 9.2 115 42-167 1-117 (157)
209 PRK12736 elongation factor Tu; 99.3 3E-11 6.5E-16 105.7 14.7 118 33-165 8-141 (394)
210 cd04167 Snu114p Snu114p subfam 99.3 2.7E-11 5.9E-16 97.4 13.3 112 39-165 2-136 (213)
211 COG2262 HflX GTPases [General 99.3 5.4E-11 1.2E-15 101.5 15.6 126 36-166 191-318 (411)
212 cd01888 eIF2_gamma eIF2-gamma 99.3 3.4E-11 7.3E-16 96.1 13.6 115 38-165 1-150 (203)
213 PF10662 PduV-EutP: Ethanolami 99.3 9E-12 2E-16 92.8 9.4 98 39-165 3-102 (143)
214 cd01885 EF2 EF2 (for archaea a 99.3 3.6E-11 7.8E-16 97.1 13.5 112 39-165 2-138 (222)
215 KOG0073 GTP-binding ADP-ribosy 99.3 2.6E-11 5.7E-16 90.6 11.4 126 24-165 4-130 (185)
216 PLN03127 Elongation factor Tu; 99.3 8.3E-11 1.8E-15 104.2 16.6 119 32-165 56-190 (447)
217 KOG0394 Ras-related GTPase [Ge 99.3 8.2E-12 1.8E-16 95.1 8.3 120 36-165 8-131 (210)
218 cd04165 GTPBP1_like GTPBP1-lik 99.3 7.3E-11 1.6E-15 95.5 14.0 114 39-165 1-151 (224)
219 CHL00189 infB translation init 99.3 1.4E-11 3E-16 114.1 11.0 114 36-165 243-360 (742)
220 smart00053 DYNc Dynamin, GTPas 99.3 2E-10 4.3E-15 93.5 16.0 136 23-166 7-206 (240)
221 PRK00049 elongation factor Tu; 99.3 7.3E-11 1.6E-15 103.3 14.3 119 32-165 7-141 (396)
222 TIGR00475 selB selenocysteine- 99.3 1E-10 2.3E-15 106.8 15.8 114 38-165 1-116 (581)
223 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 5.6E-11 1.2E-15 96.1 12.3 121 39-165 1-124 (232)
224 TIGR00485 EF-Tu translation el 99.3 1.4E-10 3E-15 101.6 15.7 120 32-165 7-141 (394)
225 TIGR01394 TypA_BipA GTP-bindin 99.3 4.5E-11 9.8E-16 109.2 12.6 112 39-165 3-129 (594)
226 PRK10218 GTP-binding protein; 99.3 8.6E-11 1.9E-15 107.4 14.1 114 37-165 5-133 (607)
227 TIGR00484 EF-G translation elo 99.3 6.1E-11 1.3E-15 110.7 13.4 113 38-165 11-140 (689)
228 KOG1489 Predicted GTP-binding 99.3 2.6E-11 5.7E-16 99.9 9.3 121 38-165 197-325 (366)
229 cd01883 EF1_alpha Eukaryotic e 99.3 1.3E-10 2.9E-15 93.7 13.4 114 39-165 1-150 (219)
230 TIGR00483 EF-1_alpha translati 99.3 1E-10 2.2E-15 103.5 13.6 119 34-165 4-154 (426)
231 TIGR02836 spore_IV_A stage IV 99.3 9.3E-11 2E-15 100.7 12.6 129 26-165 6-193 (492)
232 TIGR00503 prfC peptide chain r 99.2 8E-11 1.7E-15 106.2 12.3 115 36-165 10-145 (527)
233 TIGR00491 aIF-2 translation in 99.2 7E-11 1.5E-15 107.6 11.8 113 36-165 3-134 (590)
234 PRK05124 cysN sulfate adenylyl 99.2 1.3E-10 2.8E-15 103.9 12.8 119 33-165 23-173 (474)
235 PRK12739 elongation factor G; 99.2 9.5E-11 2.1E-15 109.4 11.9 114 37-165 8-138 (691)
236 KOG0086 GTPase Rab4, small G p 99.2 3.3E-11 7.1E-16 89.1 6.6 126 38-174 10-136 (214)
237 PRK00007 elongation factor G; 99.2 9.8E-11 2.1E-15 109.3 11.5 113 38-165 11-140 (693)
238 PRK00741 prfC peptide chain re 99.2 1.9E-10 4.2E-15 103.7 12.6 115 36-165 9-144 (526)
239 TIGR02034 CysN sulfate adenyly 99.2 1.5E-10 3.3E-15 101.6 11.6 114 38-165 1-146 (406)
240 PF09439 SRPRB: Signal recogni 99.2 6.5E-11 1.4E-15 91.9 8.0 118 37-167 3-127 (181)
241 PRK05506 bifunctional sulfate 99.2 1.5E-10 3.2E-15 107.1 11.8 119 33-165 20-170 (632)
242 KOG0393 Ras-related small GTPa 99.2 3.7E-11 8.1E-16 93.9 6.1 116 36-165 3-122 (198)
243 PRK10512 selenocysteinyl-tRNA- 99.2 9.1E-10 2E-14 101.1 16.0 113 39-165 2-117 (614)
244 COG2229 Predicted GTPase [Gene 99.2 1.2E-09 2.5E-14 83.6 13.9 118 35-167 8-136 (187)
245 PRK13351 elongation factor G; 99.2 3.4E-10 7.5E-15 105.8 12.9 114 37-165 8-138 (687)
246 cd01858 NGP_1 NGP-1. Autoanti 99.2 1.4E-10 3.1E-15 88.7 8.6 57 36-95 101-157 (157)
247 TIGR01393 lepA GTP-binding pro 99.2 2.2E-10 4.8E-15 104.8 11.2 113 38-165 4-135 (595)
248 PRK04004 translation initiatio 99.2 2.6E-10 5.6E-15 104.2 11.6 114 36-165 5-136 (586)
249 PTZ00141 elongation factor 1- 99.1 8E-10 1.7E-14 98.1 13.5 118 34-164 4-157 (446)
250 PRK09563 rbgA GTPase YlqF; Rev 99.1 3.1E-10 6.8E-15 95.2 10.2 66 36-104 120-185 (287)
251 TIGR00490 aEF-2 translation el 99.1 6.6E-10 1.4E-14 104.1 13.3 124 27-165 9-151 (720)
252 cd01882 BMS1 Bms1. Bms1 is an 99.1 1.5E-09 3.3E-14 87.9 13.8 108 35-165 37-146 (225)
253 KOG0088 GTPase Rab21, small G 99.1 4.2E-11 9.1E-16 89.1 4.0 122 37-171 13-137 (218)
254 cd01849 YlqF_related_GTPase Yl 99.1 3E-10 6.4E-15 86.8 8.8 85 8-95 69-155 (155)
255 cd04178 Nucleostemin_like Nucl 99.1 3.3E-10 7.1E-15 88.0 8.9 57 36-95 116-172 (172)
256 PTZ00416 elongation factor 2; 99.1 1.1E-09 2.3E-14 104.2 13.3 115 36-165 18-157 (836)
257 TIGR03596 GTPase_YlqF ribosome 99.1 6.3E-10 1.4E-14 92.9 10.2 64 36-102 117-180 (276)
258 KOG0091 GTPase Rab39, small G 99.1 2.6E-10 5.7E-15 85.3 6.9 129 37-175 8-139 (213)
259 PRK05433 GTP-binding protein L 99.1 8.5E-10 1.8E-14 101.1 11.6 113 38-165 8-139 (600)
260 TIGR03680 eif2g_arch translati 99.1 2.6E-09 5.6E-14 94.0 13.8 118 35-165 2-147 (406)
261 PRK04000 translation initiatio 99.1 1.5E-09 3.3E-14 95.5 12.3 122 31-165 3-152 (411)
262 COG0536 Obg Predicted GTPase [ 99.1 1.7E-09 3.7E-14 90.3 11.6 120 39-165 161-288 (369)
263 PTZ00258 GTP-binding protein; 99.1 1.1E-09 2.4E-14 94.8 10.7 89 32-127 16-125 (390)
264 COG1163 DRG Predicted GTPase [ 99.1 6.5E-10 1.4E-14 92.2 8.5 111 11-128 23-151 (365)
265 cd01900 YchF YchF subfamily. 99.1 1E-09 2.2E-14 91.0 9.4 84 40-127 1-102 (274)
266 PRK09601 GTP-binding protein Y 99.0 1.8E-09 3.9E-14 92.5 11.0 86 38-127 3-106 (364)
267 KOG0083 GTPase Rab26/Rab37, sm 99.0 3.5E-11 7.5E-16 87.1 -0.3 118 41-169 1-120 (192)
268 PLN00043 elongation factor 1-a 99.0 1.1E-08 2.4E-13 90.8 15.1 119 34-165 4-158 (447)
269 cd01855 YqeH YqeH. YqeH is an 99.0 8.1E-10 1.7E-14 87.2 6.7 70 23-95 113-190 (190)
270 PLN00116 translation elongatio 99.0 6.8E-09 1.5E-13 98.8 13.7 117 34-165 16-163 (843)
271 PRK07560 elongation factor EF- 99.0 1.1E-08 2.4E-13 96.2 14.7 115 36-165 19-152 (731)
272 KOG0075 GTP-binding ADP-ribosy 99.0 3.2E-09 7E-14 78.2 8.4 116 36-165 19-135 (186)
273 cd01856 YlqF YlqF. Proteins o 99.0 2.2E-09 4.8E-14 83.3 8.1 57 36-95 114-170 (171)
274 COG1161 Predicted GTPases [Gen 99.0 4.3E-09 9.3E-14 89.6 10.1 89 11-102 104-194 (322)
275 cd01851 GBP Guanylate-binding 99.0 5.3E-08 1.1E-12 78.9 16.0 122 36-164 6-146 (224)
276 KOG0448 Mitofusin 1 GTPase, in 99.0 1.1E-08 2.5E-13 91.9 12.5 128 24-167 99-276 (749)
277 PF03029 ATP_bind_1: Conserved 98.9 2.9E-10 6.4E-15 92.7 2.1 78 86-166 92-170 (238)
278 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 2.4E-09 5.1E-14 80.5 6.8 55 39-96 85-139 (141)
279 cd01899 Ygr210 Ygr210 subfamil 98.9 4.7E-09 1E-13 89.1 9.2 82 40-128 1-110 (318)
280 PF03193 DUF258: Protein of un 98.9 7.1E-10 1.5E-14 84.5 3.1 73 21-101 24-103 (161)
281 PRK13768 GTPase; Provisional 98.9 1.1E-08 2.4E-13 84.3 10.4 79 85-166 97-176 (253)
282 PRK12740 elongation factor G; 98.9 7E-09 1.5E-13 96.8 9.9 108 43-165 1-125 (668)
283 KOG0070 GTP-binding ADP-ribosy 98.9 3.6E-09 7.9E-14 81.0 6.4 117 34-165 14-131 (181)
284 KOG3883 Ras family small GTPas 98.9 4.9E-08 1.1E-12 72.5 11.7 124 35-168 7-134 (198)
285 KOG1532 GTPase XAB1, interacts 98.9 8.7E-09 1.9E-13 83.7 8.5 77 85-165 116-194 (366)
286 PRK09602 translation-associate 98.9 1.4E-08 2.9E-13 88.8 10.3 84 38-128 2-113 (396)
287 KOG3859 Septins (P-loop GTPase 98.9 2E-08 4.3E-13 81.7 10.4 168 6-192 19-211 (406)
288 KOG0097 GTPase Rab14, small G 98.9 8.2E-09 1.8E-13 75.5 7.4 126 38-176 12-140 (215)
289 COG4917 EutP Ethanolamine util 98.9 6.1E-09 1.3E-13 74.8 6.4 99 39-165 3-103 (148)
290 cd01859 MJ1464 MJ1464. This f 98.9 1.4E-08 2.9E-13 77.5 8.8 58 35-95 99-156 (156)
291 KOG0074 GTP-binding ADP-ribosy 98.9 4E-08 8.6E-13 72.1 10.4 128 23-165 3-132 (185)
292 COG5256 TEF1 Translation elong 98.9 3.4E-08 7.3E-13 84.6 11.4 140 34-190 4-179 (428)
293 KOG0071 GTP-binding ADP-ribosy 98.8 5.5E-08 1.2E-12 71.2 10.6 118 34-166 14-132 (180)
294 PRK12289 GTPase RsgA; Reviewed 98.8 8.3E-09 1.8E-13 88.7 7.2 59 39-100 174-239 (352)
295 KOG0081 GTPase Rab27, small G 98.8 1.2E-09 2.7E-14 81.4 1.2 119 38-167 10-139 (219)
296 PRK12288 GTPase RsgA; Reviewed 98.8 1.7E-08 3.7E-13 86.7 8.0 59 39-100 207-272 (347)
297 TIGR01425 SRP54_euk signal rec 98.8 1.4E-07 3E-12 82.7 13.1 119 36-165 99-252 (429)
298 TIGR03597 GTPase_YqeH ribosome 98.8 4E-08 8.6E-13 85.1 9.4 119 37-165 154-279 (360)
299 COG1217 TypA Predicted membran 98.8 9.7E-08 2.1E-12 82.8 11.5 134 38-192 6-154 (603)
300 PRK09435 membrane ATPase/prote 98.8 3.4E-07 7.4E-12 78.0 14.7 36 23-58 42-77 (332)
301 PTZ00327 eukaryotic translatio 98.8 2E-07 4.4E-12 82.9 13.7 117 36-165 33-184 (460)
302 TIGR00157 ribosome small subun 98.7 2E-08 4.4E-13 82.4 6.7 59 38-100 121-186 (245)
303 COG1162 Predicted GTPases [Gen 98.7 2.5E-08 5.3E-13 82.8 6.8 59 39-100 166-231 (301)
304 KOG1145 Mitochondrial translat 98.7 5.6E-07 1.2E-11 79.6 14.3 115 35-165 151-266 (683)
305 COG0532 InfB Translation initi 98.7 3.8E-07 8.3E-12 80.5 13.3 114 36-165 4-120 (509)
306 KOG4252 GTP-binding protein [S 98.7 8.6E-09 1.9E-13 78.4 2.6 116 37-166 20-138 (246)
307 PF00448 SRP54: SRP54-type pro 98.7 1.4E-08 3E-13 80.5 3.6 71 84-165 83-153 (196)
308 KOG0410 Predicted GTP binding 98.7 2.2E-07 4.7E-12 77.3 10.1 129 34-165 175-307 (410)
309 KOG2486 Predicted GTPase [Gene 98.6 3.3E-07 7.2E-12 74.7 10.5 121 36-165 135-261 (320)
310 PRK11889 flhF flagellar biosyn 98.6 9.8E-08 2.1E-12 82.4 7.6 119 36-165 240-390 (436)
311 PRK13796 GTPase YqeH; Provisio 98.6 1E-07 2.2E-12 82.7 7.8 59 37-98 160-223 (365)
312 KOG0077 Vesicle coat complex C 98.6 3.6E-07 7.8E-12 68.9 9.2 115 36-165 19-134 (193)
313 KOG0447 Dynamin-like GTP bindi 98.6 6.5E-07 1.4E-11 79.1 12.2 80 86-171 413-498 (980)
314 COG0480 FusA Translation elong 98.6 2.9E-07 6.2E-12 85.3 10.4 114 37-165 10-141 (697)
315 PRK00098 GTPase RsgA; Reviewed 98.6 2.2E-07 4.7E-12 78.5 8.5 59 38-99 165-230 (298)
316 TIGR03348 VI_IcmF type VI secr 98.6 3.6E-07 7.9E-12 90.0 11.3 142 18-165 85-256 (1169)
317 COG0050 TufB GTPases - transla 98.6 5.6E-07 1.2E-11 74.0 9.9 142 29-190 4-161 (394)
318 KOG0090 Signal recognition par 98.6 9.7E-07 2.1E-11 69.4 10.7 121 36-169 37-162 (238)
319 KOG1954 Endocytosis/signaling 98.6 5.3E-07 1.2E-11 76.3 9.9 121 38-165 59-224 (532)
320 cd01854 YjeQ_engC YjeQ/EngC. 98.6 2.8E-07 6.2E-12 77.4 8.2 59 38-99 162-227 (287)
321 KOG0468 U5 snRNP-specific prot 98.5 9.5E-07 2.1E-11 79.6 11.2 127 36-177 127-276 (971)
322 KOG0462 Elongation factor-type 98.5 5.2E-07 1.1E-11 79.7 9.2 114 38-167 61-192 (650)
323 PTZ00099 rab6; Provisional 98.5 1.3E-06 2.9E-11 68.0 10.0 70 85-166 29-99 (176)
324 TIGR00064 ftsY signal recognit 98.5 3.1E-06 6.6E-11 70.5 12.6 73 83-166 153-231 (272)
325 TIGR00750 lao LAO/AO transport 98.5 2.5E-06 5.4E-11 72.2 12.1 37 23-59 20-56 (300)
326 COG1419 FlhF Flagellar GTP-bin 98.5 2.8E-07 6.1E-12 79.3 5.9 118 37-165 203-351 (407)
327 PRK10416 signal recognition pa 98.5 3.1E-06 6.7E-11 72.0 12.0 24 36-59 113-136 (318)
328 COG4108 PrfC Peptide chain rel 98.4 1.2E-06 2.6E-11 75.6 9.3 113 37-165 12-146 (528)
329 KOG0458 Elongation factor 1 al 98.4 2.7E-06 5.8E-11 75.8 11.7 145 34-194 174-353 (603)
330 KOG3886 GTP-binding protein [S 98.4 1.6E-06 3.4E-11 69.1 8.9 116 38-166 5-130 (295)
331 PF03308 ArgK: ArgK protein; 98.4 3.9E-07 8.4E-12 74.1 5.4 37 22-58 14-50 (266)
332 PRK14974 cell division protein 98.4 1.8E-06 3.9E-11 73.8 9.4 120 36-166 139-293 (336)
333 KOG2485 Conserved ATP/GTP bind 98.4 1.3E-06 2.7E-11 72.5 7.9 72 34-105 140-216 (335)
334 COG2895 CysN GTPases - Sulfate 98.4 5.1E-06 1.1E-10 70.1 11.5 118 34-166 3-153 (431)
335 PRK14722 flhF flagellar biosyn 98.4 2.9E-06 6.3E-11 73.4 9.6 24 37-60 137-160 (374)
336 TIGR00092 GTP-binding protein 98.4 3.3E-06 7.2E-11 72.7 9.9 84 38-127 3-107 (368)
337 PRK12726 flagellar biosynthesi 98.3 1.1E-06 2.5E-11 75.6 6.5 118 37-165 206-355 (407)
338 KOG1486 GTP-binding protein DR 98.3 2E-06 4.3E-11 69.4 7.2 104 38-148 63-167 (364)
339 COG0012 Predicted GTPase, prob 98.3 4.9E-06 1.1E-10 70.9 9.2 84 37-127 2-107 (372)
340 PRK14845 translation initiatio 98.3 6E-06 1.3E-10 79.6 10.8 102 48-165 472-591 (1049)
341 PRK14723 flhF flagellar biosyn 98.3 3.5E-06 7.7E-11 78.6 9.0 119 38-165 186-336 (767)
342 KOG1424 Predicted GTP-binding 98.3 1.9E-06 4.2E-11 75.7 6.8 64 35-101 312-375 (562)
343 COG3523 IcmF Type VI protein s 98.3 5.4E-06 1.2E-10 80.4 10.4 159 13-177 92-277 (1188)
344 PRK00771 signal recognition pa 98.3 2E-06 4.4E-11 75.9 6.9 119 36-165 94-245 (437)
345 KOG0096 GTPase Ran/TC4/GSP1 (n 98.3 3.1E-06 6.6E-11 65.3 6.7 119 35-165 8-127 (216)
346 COG1703 ArgK Putative periplas 98.2 5.7E-06 1.2E-10 68.5 8.2 36 23-58 37-72 (323)
347 PRK14721 flhF flagellar biosyn 98.2 3.7E-06 8.1E-11 73.8 7.3 119 37-166 191-340 (420)
348 PRK05703 flhF flagellar biosyn 98.2 8.7E-06 1.9E-10 72.0 8.8 72 83-165 298-370 (424)
349 KOG0076 GTP-binding ADP-ribosy 98.2 1.9E-06 4.1E-11 65.5 3.9 118 35-165 15-139 (197)
350 PRK10867 signal recognition pa 98.2 7.2E-06 1.6E-10 72.4 7.7 71 84-165 183-253 (433)
351 PRK12724 flagellar biosynthesi 98.1 2.9E-06 6.2E-11 74.1 5.1 23 37-59 223-245 (432)
352 PRK12727 flagellar biosynthesi 98.1 2.6E-05 5.7E-10 70.0 10.7 23 37-59 350-372 (559)
353 cd03115 SRP The signal recogni 98.1 0.0001 2.3E-09 57.0 12.7 72 84-166 82-153 (173)
354 COG5192 BMS1 GTP-binding prote 98.1 3.1E-05 6.7E-10 69.1 10.4 111 32-165 64-176 (1077)
355 PRK06731 flhF flagellar biosyn 98.1 9.1E-06 2E-10 67.4 6.6 119 37-166 75-225 (270)
356 PRK12723 flagellar biosynthesi 98.1 3.6E-05 7.9E-10 67.1 10.4 119 36-165 173-325 (388)
357 KOG0072 GTP-binding ADP-ribosy 98.0 1.8E-05 3.8E-10 58.5 6.0 126 24-165 6-132 (182)
358 TIGR00959 ffh signal recogniti 98.0 1.1E-05 2.4E-10 71.2 5.8 70 84-164 182-251 (428)
359 cd03112 CobW_like The function 98.0 1.6E-05 3.5E-10 60.8 5.8 22 39-60 2-23 (158)
360 KOG2423 Nucleolar GTPase [Gene 98.0 6.1E-06 1.3E-10 70.5 3.7 72 23-97 291-364 (572)
361 KOG1491 Predicted GTP-binding 98.0 3.5E-05 7.6E-10 64.8 7.9 89 32-127 15-124 (391)
362 KOG0461 Selenocysteine-specifi 97.9 0.00014 3E-09 61.5 11.1 114 36-167 6-137 (522)
363 smart00275 G_alpha G protein a 97.9 9.4E-05 2E-09 63.7 10.3 76 81-165 180-264 (342)
364 COG3276 SelB Selenocysteine-sp 97.9 0.00022 4.8E-09 62.0 11.8 114 39-166 2-117 (447)
365 COG0481 LepA Membrane GTPase L 97.9 6.8E-05 1.5E-09 65.7 8.6 114 39-167 11-143 (603)
366 KOG2484 GTPase [General functi 97.8 1.9E-05 4.1E-10 67.6 4.4 61 35-98 250-310 (435)
367 cd00066 G-alpha G protein alph 97.8 0.00011 2.3E-09 62.7 8.9 76 81-165 157-241 (317)
368 COG5257 GCD11 Translation init 97.8 0.00018 3.9E-09 60.2 9.7 116 36-165 9-153 (415)
369 PRK01889 GTPase RsgA; Reviewed 97.8 2E-05 4.3E-10 68.2 4.3 61 38-99 196-261 (356)
370 KOG3887 Predicted small GTPase 97.8 6.5E-05 1.4E-09 60.5 6.7 117 38-165 28-148 (347)
371 KOG1673 Ras GTPases [General f 97.8 9.6E-05 2.1E-09 55.4 7.1 115 36-165 19-137 (205)
372 KOG0460 Mitochondrial translat 97.8 0.00017 3.6E-09 60.8 9.3 138 32-189 49-202 (449)
373 PRK06995 flhF flagellar biosyn 97.8 4E-05 8.8E-10 68.4 5.9 23 38-60 257-279 (484)
374 KOG0781 Signal recognition par 97.7 0.00014 3.1E-09 63.8 8.1 126 34-165 375-543 (587)
375 KOG1144 Translation initiation 97.7 0.00015 3.3E-09 66.6 8.5 114 36-165 474-605 (1064)
376 KOG1534 Putative transcription 97.7 5.5E-05 1.2E-09 59.7 5.0 88 85-177 98-190 (273)
377 KOG0464 Elongation factor G [T 97.7 7E-06 1.5E-10 70.6 -0.0 147 4-165 4-167 (753)
378 COG0541 Ffh Signal recognition 97.7 8.5E-05 1.8E-09 64.6 6.0 141 13-164 72-251 (451)
379 COG0552 FtsY Signal recognitio 97.7 0.00019 4.1E-09 60.6 7.6 123 35-165 137-297 (340)
380 COG5258 GTPBP1 GTPase [General 97.7 0.00025 5.4E-09 60.8 8.4 141 34-193 114-290 (527)
381 KOG0467 Translation elongation 97.6 0.00027 5.8E-09 65.1 8.7 113 37-164 9-136 (887)
382 cd03114 ArgK-like The function 97.6 0.00064 1.4E-08 51.4 9.6 20 40-59 2-21 (148)
383 KOG0780 Signal recognition par 97.6 0.00018 3.9E-09 61.6 6.7 42 83-129 182-223 (483)
384 KOG1533 Predicted GTPase [Gene 97.6 7.7E-05 1.7E-09 59.8 4.2 33 38-70 3-41 (290)
385 KOG0082 G-protein alpha subuni 97.6 0.0015 3.3E-08 55.9 12.0 79 78-165 188-275 (354)
386 KOG1707 Predicted Ras related/ 97.6 0.00085 1.8E-08 60.3 10.7 116 34-165 422-539 (625)
387 cd02038 FleN-like FleN is a me 97.5 0.002 4.4E-08 48.0 11.1 100 41-164 4-109 (139)
388 PF02492 cobW: CobW/HypB/UreG, 97.5 5.6E-05 1.2E-09 59.0 2.6 71 84-165 84-154 (178)
389 PF00004 AAA: ATPase family as 97.5 0.00055 1.2E-08 49.9 7.8 100 40-163 1-111 (132)
390 smart00010 small_GTPase Small 97.5 0.00048 1E-08 49.6 7.0 24 38-61 1-24 (124)
391 KOG2749 mRNA cleavage and poly 97.5 0.0027 5.9E-08 54.0 11.9 63 87-165 214-276 (415)
392 PF05673 DUF815: Protein of un 97.4 0.0025 5.3E-08 51.9 10.5 42 19-61 35-76 (249)
393 KOG1143 Predicted translation 97.4 0.00047 1E-08 58.9 6.3 118 37-167 167-318 (591)
394 PF09547 Spore_IV_A: Stage IV 97.4 0.0033 7.3E-08 54.9 11.4 36 25-60 5-40 (492)
395 KOG1970 Checkpoint RAD17-RFC c 97.3 0.003 6.5E-08 56.6 11.2 25 38-62 111-135 (634)
396 cd02036 MinD Bacterial cell di 97.3 0.0056 1.2E-07 47.2 11.8 109 41-165 4-127 (179)
397 cd03110 Fer4_NifH_child This p 97.3 0.007 1.5E-07 46.9 12.0 66 83-165 91-156 (179)
398 KOG1487 GTP-binding protein DR 97.3 0.00025 5.4E-09 57.8 3.7 119 38-163 60-180 (358)
399 cd01983 Fer4_NifH The Fer4_Nif 97.3 0.0068 1.5E-07 41.3 10.3 68 40-128 2-69 (99)
400 PRK11537 putative GTP-binding 97.2 0.00047 1E-08 58.8 4.7 22 39-60 6-27 (318)
401 COG0194 Gmk Guanylate kinase [ 97.2 0.00021 4.6E-09 55.4 2.3 25 37-61 4-28 (191)
402 PRK14737 gmk guanylate kinase; 97.2 0.00045 9.9E-09 54.3 4.0 26 36-61 3-28 (186)
403 COG1116 TauB ABC-type nitrate/ 97.2 0.00032 6.9E-09 56.9 3.0 24 39-62 31-54 (248)
404 PF06858 NOG1: Nucleolar GTP-b 97.2 0.0015 3.2E-08 40.7 5.3 45 116-163 12-58 (58)
405 PF13207 AAA_17: AAA domain; P 97.1 0.00043 9.4E-09 50.0 3.1 22 39-60 1-22 (121)
406 KOG0446 Vacuolar sorting prote 97.1 0.00056 1.2E-08 63.5 4.4 39 23-61 14-53 (657)
407 PF13555 AAA_29: P-loop contai 97.1 0.00053 1.1E-08 43.6 2.9 20 39-58 25-44 (62)
408 cd00009 AAA The AAA+ (ATPases 97.1 0.012 2.6E-07 43.0 10.8 26 36-61 18-43 (151)
409 cd03111 CpaE_like This protein 97.1 0.013 2.7E-07 41.6 10.3 96 41-161 4-106 (106)
410 COG0523 Putative GTPases (G3E 97.1 0.0041 8.9E-08 53.0 8.9 122 39-167 3-160 (323)
411 cd02042 ParA ParA and ParB of 97.0 0.012 2.7E-07 41.2 10.0 70 40-128 2-72 (104)
412 cd00071 GMPK Guanosine monopho 97.0 0.00087 1.9E-08 50.0 3.8 21 40-60 2-22 (137)
413 PRK14738 gmk guanylate kinase; 97.0 0.00084 1.8E-08 53.6 4.0 25 36-60 12-36 (206)
414 PF00005 ABC_tran: ABC transpo 97.0 0.00068 1.5E-08 50.1 3.2 25 38-62 12-36 (137)
415 KOG0465 Mitochondrial elongati 97.0 0.00082 1.8E-08 60.7 4.1 115 38-167 40-171 (721)
416 cd01130 VirB11-like_ATPase Typ 97.0 0.001 2.2E-08 52.2 4.3 26 36-61 24-49 (186)
417 PRK09270 nucleoside triphospha 96.9 0.0017 3.6E-08 52.8 5.3 35 26-60 22-56 (229)
418 COG1136 SalX ABC-type antimicr 96.9 0.00069 1.5E-08 54.6 3.0 24 39-62 33-56 (226)
419 COG3840 ThiQ ABC-type thiamine 96.9 0.00079 1.7E-08 52.3 2.9 24 39-62 27-50 (231)
420 COG1341 Predicted GTPase or GT 96.9 0.0048 1E-07 53.5 7.9 26 34-59 70-95 (398)
421 PF02263 GBP: Guanylate-bindin 96.9 0.012 2.6E-07 48.8 10.1 63 36-98 20-87 (260)
422 COG1618 Predicted nucleotide k 96.9 0.019 4.1E-07 43.7 10.1 24 35-58 3-26 (179)
423 PRK07261 topology modulation p 96.9 0.00086 1.9E-08 51.9 3.1 22 39-60 2-23 (171)
424 PRK13851 type IV secretion sys 96.9 0.0012 2.5E-08 56.9 4.1 25 36-60 161-185 (344)
425 COG3839 MalK ABC-type sugar tr 96.9 0.00078 1.7E-08 57.5 3.0 23 39-61 31-53 (338)
426 PF03215 Rad17: Rad17 cell cyc 96.9 0.014 3E-07 53.1 11.0 41 21-61 29-69 (519)
427 PRK08118 topology modulation p 96.9 0.00093 2E-08 51.6 3.1 22 39-60 3-24 (167)
428 TIGR03263 guanyl_kin guanylate 96.9 0.0015 3.3E-08 50.7 4.3 23 39-61 3-25 (180)
429 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.038 8.3E-07 41.4 11.8 24 38-61 27-50 (144)
430 PF13671 AAA_33: AAA domain; P 96.8 0.00095 2.1E-08 49.6 2.9 21 40-60 2-22 (143)
431 COG0563 Adk Adenylate kinase a 96.8 0.001 2.2E-08 51.9 3.0 22 39-60 2-23 (178)
432 TIGR00150 HI0065_YjeE ATPase, 96.8 0.003 6.6E-08 46.7 5.4 37 24-60 9-45 (133)
433 PRK13900 type IV secretion sys 96.8 0.0019 4.2E-08 55.3 5.0 25 36-60 159-183 (332)
434 TIGR02782 TrbB_P P-type conjug 96.8 0.0039 8.5E-08 52.7 6.7 25 36-60 131-155 (299)
435 PRK00300 gmk guanylate kinase; 96.8 0.0017 3.7E-08 51.5 4.0 26 36-61 4-29 (205)
436 PF13191 AAA_16: AAA ATPase do 96.8 0.0014 3E-08 50.8 3.4 29 32-60 19-47 (185)
437 PRK00411 cdc6 cell division co 96.7 0.033 7.2E-07 48.7 12.4 38 23-60 39-78 (394)
438 COG4525 TauB ABC-type taurine 96.7 0.0012 2.6E-08 51.9 2.8 26 36-61 30-55 (259)
439 COG3640 CooC CO dehydrogenase 96.7 0.029 6.2E-07 45.4 10.6 44 116-164 154-197 (255)
440 cd03230 ABC_DR_subfamily_A Thi 96.7 0.037 8E-07 42.7 11.1 24 38-61 27-50 (173)
441 PRK10078 ribose 1,5-bisphospho 96.7 0.0015 3.2E-08 51.2 3.2 23 39-61 4-26 (186)
442 CHL00195 ycf46 Ycf46; Provisio 96.7 0.02 4.4E-07 51.6 10.6 25 36-60 258-282 (489)
443 PRK05480 uridine/cytidine kina 96.7 0.0016 3.4E-08 52.0 3.2 26 35-60 4-29 (209)
444 PF04665 Pox_A32: Poxvirus A32 96.7 0.0017 3.7E-08 52.9 3.4 26 35-60 11-36 (241)
445 KOG4423 GTP-binding protein-li 96.6 5.2E-05 1.1E-09 58.5 -5.2 116 38-165 26-148 (229)
446 PRK08472 fliI flagellum-specif 96.6 0.0011 2.4E-08 58.6 2.3 89 37-128 157-256 (434)
447 cd02019 NK Nucleoside/nucleoti 96.6 0.0019 4.2E-08 42.0 2.9 21 40-60 2-22 (69)
448 PRK06696 uridine kinase; Valid 96.6 0.0044 9.6E-08 50.1 5.6 37 23-59 7-44 (223)
449 TIGR02322 phosphon_PhnN phosph 96.6 0.0015 3.2E-08 50.7 2.7 22 39-60 3-24 (179)
450 PF05496 RuvB_N: Holliday junc 96.6 0.005 1.1E-07 49.6 5.6 36 26-61 39-74 (233)
451 PRK08233 hypothetical protein; 96.6 0.002 4.4E-08 49.9 3.3 25 36-60 2-26 (182)
452 cd00820 PEPCK_HprK Phosphoenol 96.6 0.0019 4E-08 45.9 2.8 21 38-58 16-36 (107)
453 TIGR00235 udk uridine kinase. 96.6 0.0017 3.8E-08 51.8 2.9 25 36-60 5-29 (207)
454 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0019 4.1E-08 50.4 3.0 25 37-61 25-49 (177)
455 cd03225 ABC_cobalt_CbiO_domain 96.6 0.002 4.4E-08 51.4 3.2 24 38-61 28-51 (211)
456 PRK10463 hydrogenase nickel in 96.6 0.003 6.6E-08 52.9 4.3 25 36-60 103-127 (290)
457 smart00382 AAA ATPases associa 96.6 0.0024 5.3E-08 46.3 3.4 24 38-61 3-26 (148)
458 cd01131 PilT Pilus retraction 96.6 0.0017 3.6E-08 51.6 2.6 23 39-61 3-25 (198)
459 PF13238 AAA_18: AAA domain; P 96.5 0.002 4.4E-08 46.7 2.8 21 40-60 1-21 (129)
460 cd03261 ABC_Org_Solvent_Resist 96.5 0.0022 4.7E-08 52.2 3.2 24 38-61 27-50 (235)
461 PRK06217 hypothetical protein; 96.5 0.0021 4.7E-08 50.2 3.1 23 38-60 2-24 (183)
462 cd03238 ABC_UvrA The excision 96.5 0.0022 4.7E-08 50.0 3.0 24 36-59 20-43 (176)
463 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0023 4.9E-08 51.4 3.2 24 38-61 31-54 (218)
464 PRK14530 adenylate kinase; Pro 96.5 0.0026 5.6E-08 51.1 3.5 23 37-59 3-25 (215)
465 TIGR00960 3a0501s02 Type II (G 96.5 0.0023 5E-08 51.2 3.2 24 38-61 30-53 (216)
466 cd03226 ABC_cobalt_CbiO_domain 96.5 0.0024 5.2E-08 50.8 3.2 24 38-61 27-50 (205)
467 PRK13833 conjugal transfer pro 96.5 0.0032 6.9E-08 53.7 4.0 25 36-60 143-167 (323)
468 cd03264 ABC_drug_resistance_li 96.5 0.0025 5.4E-08 50.9 3.3 23 39-61 27-49 (211)
469 TIGR02673 FtsE cell division A 96.5 0.0024 5.3E-08 51.0 3.2 24 38-61 29-52 (214)
470 TIGR01166 cbiO cobalt transpor 96.5 0.0025 5.5E-08 50.0 3.2 23 39-61 20-42 (190)
471 cd03293 ABC_NrtD_SsuB_transpor 96.5 0.0025 5.5E-08 51.2 3.2 24 38-61 31-54 (220)
472 COG1124 DppF ABC-type dipeptid 96.5 0.0059 1.3E-07 49.5 5.2 26 37-62 33-58 (252)
473 cd03292 ABC_FtsE_transporter F 96.5 0.0026 5.6E-08 50.8 3.2 24 38-61 28-51 (214)
474 cd03265 ABC_DrrA DrrA is the A 96.5 0.0026 5.7E-08 51.1 3.2 24 38-61 27-50 (220)
475 TIGR03608 L_ocin_972_ABC putat 96.5 0.0026 5.7E-08 50.5 3.2 23 39-61 26-48 (206)
476 cd02032 Bchl_like This family 96.4 0.049 1.1E-06 45.1 10.9 20 39-58 2-21 (267)
477 PRK07952 DNA replication prote 96.4 0.04 8.8E-07 45.2 10.1 23 38-60 100-122 (244)
478 cd03259 ABC_Carb_Solutes_like 96.4 0.0027 5.9E-08 50.7 3.2 24 38-61 27-50 (213)
479 COG1126 GlnQ ABC-type polar am 96.4 0.0029 6.2E-08 50.5 3.2 24 38-61 29-52 (240)
480 cd03224 ABC_TM1139_LivF_branch 96.4 0.0027 5.9E-08 51.0 3.2 24 38-61 27-50 (222)
481 cd03269 ABC_putative_ATPase Th 96.4 0.0028 6.2E-08 50.5 3.2 24 38-61 27-50 (210)
482 TIGR02315 ABC_phnC phosphonate 96.4 0.0028 6E-08 51.8 3.2 24 38-61 29-52 (243)
483 cd03216 ABC_Carb_Monos_I This 96.4 0.0031 6.7E-08 48.4 3.2 25 37-61 26-50 (163)
484 cd03260 ABC_PstB_phosphate_tra 96.4 0.0027 5.9E-08 51.3 3.1 24 38-61 27-50 (227)
485 cd03262 ABC_HisP_GlnQ_permease 96.4 0.0029 6.4E-08 50.5 3.2 24 38-61 27-50 (213)
486 PF13521 AAA_28: AAA domain; P 96.4 0.0022 4.7E-08 49.1 2.3 22 39-60 1-22 (163)
487 TIGR00101 ureG urease accessor 96.4 0.0028 6E-08 50.4 3.0 24 37-60 1-24 (199)
488 cd03243 ABC_MutS_homologs The 96.4 0.051 1.1E-06 43.1 10.3 23 38-60 30-52 (202)
489 KOG0459 Polypeptide release fa 96.4 0.0083 1.8E-07 51.9 5.9 141 34-188 76-251 (501)
490 cd03229 ABC_Class3 This class 96.4 0.0031 6.8E-08 49.0 3.2 24 38-61 27-50 (178)
491 cd03258 ABC_MetN_methionine_tr 96.4 0.003 6.5E-08 51.2 3.2 24 38-61 32-55 (233)
492 TIGR02211 LolD_lipo_ex lipopro 96.4 0.0031 6.7E-08 50.7 3.2 24 38-61 32-55 (221)
493 PRK13894 conjugal transfer ATP 96.4 0.0037 8E-08 53.3 3.8 25 36-60 147-171 (319)
494 COG4988 CydD ABC-type transpor 96.4 0.0028 6.1E-08 57.1 3.2 25 38-62 348-372 (559)
495 TIGR02788 VirB11 P-type DNA tr 96.4 0.0049 1.1E-07 52.3 4.6 26 36-61 143-168 (308)
496 COG2884 FtsE Predicted ATPase 96.4 0.0028 6.1E-08 49.5 2.7 23 39-61 30-52 (223)
497 cd03235 ABC_Metallic_Cations A 96.4 0.0031 6.8E-08 50.4 3.1 24 38-61 26-49 (213)
498 PRK15177 Vi polysaccharide exp 96.4 0.0032 7E-08 50.5 3.2 23 39-61 15-37 (213)
499 cd03218 ABC_YhbG The ABC trans 96.4 0.0032 7E-08 51.0 3.2 24 38-61 27-50 (232)
500 TIGR01189 ccmA heme ABC export 96.3 0.0034 7.4E-08 49.6 3.3 24 38-61 27-50 (198)
No 1
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=100.00 E-value=3.4e-40 Score=273.27 Aligned_cols=232 Identities=68% Similarity=1.072 Sum_probs=207.3
Q ss_pred CCcc-ccccccccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEE
Q 026593 1 MGSL-LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVS 79 (236)
Q Consensus 1 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~ 79 (236)
|+|+ +.|.|.|+++++..++..+.+++.++++.....++|+++|.+|+||||++|+|+|.+++.++.+.+.+..+....
T Consensus 1 ~~~~~~~~~w~g~~~~~~~tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~ 80 (313)
T TIGR00991 1 MASPQTPREWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS 80 (313)
T ss_pred CCCcccCcceeccccCCHHHHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE
Confidence 5554 569999999999999999999999999999899999999999999999999999999877777666555555555
Q ss_pred eeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEE
Q 026593 80 RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 159 (236)
Q Consensus 80 ~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~ 159 (236)
....|..+.+|||||+.+.....++....+++++...++|+||||.++|..+++..|..+++.+.+.||.+.|.++|+|+
T Consensus 81 ~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVf 160 (313)
T TIGR00991 81 RTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVL 160 (313)
T ss_pred EEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEE
Confidence 56789999999999999876656666667777777778999999998888789889999999999999999999999999
Q ss_pred eCCCCCCCCCCchHHHHhhchHHHHHHHHhhccCCCCCccccchhHHHHhcCCCCCCCCCCceecccccCCcc
Q 026593 160 THAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKVQFLCSHSVH 232 (236)
Q Consensus 160 tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (236)
|++|..++++.++++|+.++++.++.+|+.+++....+++...+|+.+++|.+.|.+|+..|+++|+...|+.
T Consensus 161 Th~d~~~pd~~~~e~fv~~~~~~lq~~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~ 233 (313)
T TIGR00991 161 THAQFSPPDGLEYNDFFSKRSEALLRVIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIP 233 (313)
T ss_pred ECCccCCCCCCCHHHHHHhcHHHHHHHHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHH
Confidence 9999988888999999999999999999999998877777888999999999999999999999999999975
No 2
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=100.00 E-value=5e-34 Score=233.36 Aligned_cols=225 Identities=49% Similarity=0.677 Sum_probs=188.4
Q ss_pred ccccccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCee
Q 026593 7 REWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT 86 (236)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (236)
+.|.|+++.++..++.+.++..+.++....+++|+|+|++|+|||||+|+|+|.....++.+.+.+.........+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~ 80 (249)
T cd01853 1 REWTGFQFFPDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFK 80 (249)
T ss_pred CCccccccCcHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE
Confidence 46889999999999999999999998888999999999999999999999999988777777777777777777788999
Q ss_pred EEEEeCCCCCCCCC---ChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 87 LNIIDTPGLVEAGY---VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 87 ~~liDTPG~~d~~~---~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
+.+|||||+.+... ..+.+...+.+++...++|+++||.++|..+++..+..+++.|.+.||...|.++++|+||+|
T Consensus 81 i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d 160 (249)
T cd01853 81 LNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAA 160 (249)
T ss_pred EEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCc
Confidence 99999999987742 344566667777776789999999999887888999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHhhchHHHHHHHHh-hccCCCCCccccchhHHHHhcCCCCCCCCCCceecccccCCcc
Q 026593 164 LCPPDGLNYDVYCSKRSDALLKTIRL-GAGLGKHEFEDYAVPVALVENSGRCSKNENDEKVQFLCSHSVH 232 (236)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (236)
..+++......+..+....++.-+.+ +.++.. .+....+|+.+++|.+.|-+|+..|++||+...|+.
T Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~ 229 (249)
T cd01853 161 SSPPDGLNGTPFSYDRFVAQRSHIVQQAIQQAA-GDPRLENPVSLVENHPRCRKNREGEKVLPNGTVWKP 229 (249)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhc-cCccccCCEEEEeCCCcccCCCCCCeECCCCCccHH
Confidence 98777776665555544444444444 344433 334567999999999999999999999999999975
No 3
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.97 E-value=3e-31 Score=213.09 Aligned_cols=187 Identities=27% Similarity=0.366 Sum_probs=148.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccc-cCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH--h
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--L 114 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l--~ 114 (236)
++|+|+|.+|+||||++|.|+|.+.+... ...+.+..+......+.|+.+.||||||+.|.....+++.+.+.+++ +
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 58999999999999999999999976655 34566778888888999999999999999998887888888888876 4
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHHHhhc-hHHHHHHHHhh-cc
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKR-SDALLKTIRLG-AG 192 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~-~~~l~~~i~~~-~~ 192 (236)
.+++|+||||++++ +++..+...++.+.+.||...|.+++||+|++|.. .+..+++|++.. ++.+++++++| +|
T Consensus 81 ~~g~ha~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~--~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADEL--EDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TT-ESEEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG--TTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCeEEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccc--ccccHHHHHhccCchhHhHHhhhcCCE
Confidence 68999999997776 89999999999999999999999999999999986 334499999954 57899999988 67
Q ss_pred CCCCCcc----------c----cchhHHHHhcCCCCCCCCCCceeccccc
Q 026593 193 LGKHEFE----------D----YAVPVALVENSGRCSKNENDEKVQFLCS 228 (236)
Q Consensus 193 ~~~~~~~----------~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (236)
|+.+++. . .+|+.|+.+|++.||++++|+++++...
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~ 206 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKE 206 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 7765543 1 5899999999999999999988776543
No 4
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.97 E-value=3.3e-30 Score=229.17 Aligned_cols=209 Identities=33% Similarity=0.518 Sum_probs=170.6
Q ss_pred HHHHHHHHhcCCCc----cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCC
Q 026593 24 IELLSKLKQENVNT----LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (236)
Q Consensus 24 ~~~~~~~~~~~~~~----~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~ 99 (236)
..+.+.+...+.++ ++|+|+|++|+||||++|+|+|...+.++...+.|+..........+..+.||||||+.+..
T Consensus 101 ~~~a~~~ea~g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 101 KAMAEQLEAEGQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSA 180 (763)
T ss_pred HHHHhhhhhhhccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccc
Confidence 34444444444443 58999999999999999999999877776665566666555556788999999999999875
Q ss_pred CCh---HHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCC-----Cc
Q 026593 100 YVN---YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG-----LN 171 (236)
Q Consensus 100 ~~~---~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-----~~ 171 (236)
... .++.+.+..++...++|+||||.+++..+....+..+++.|.+.||...|.++|||+|++|..++++ .+
T Consensus 181 ~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~t 260 (763)
T TIGR00993 181 SDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLS 260 (763)
T ss_pred cchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcC
Confidence 332 3556666667766789999999888754555567899999999999999999999999999986543 68
Q ss_pred hHHHHhhchHHHHHHHHhhccCCCCCccccchhHHHHhcCCCCCCCCCCceecccccCCcc
Q 026593 172 YDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKVQFLCSHSVH 232 (236)
Q Consensus 172 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (236)
+++|+..+.+.++++|+.|++.....++...+|+.+++|.+.|-+|+..++++|+...|+.
T Consensus 261 ye~fv~~rs~~Lq~~Irq~~g~~~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLPnG~~W~p 321 (763)
T TIGR00993 261 YDVFVAQRSHIVQQAIGQAVGDLRLMNPNLMNPVSLVENHPACRKNRAGQKVLPNGQVWKP 321 (763)
T ss_pred HHHHHhhChHHHHHHHHHhcCcceecccCCCCCEEEEecCCcccCCCCCceeCCCCchhHH
Confidence 9999999999999999999775555457788999999999999999999999999999974
No 5
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.96 E-value=7.5e-28 Score=191.25 Aligned_cols=179 Identities=22% Similarity=0.287 Sum_probs=145.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccccc-CcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH--h
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNS-FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL--L 114 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l--~ 114 (236)
++|+++|.+|+|||||+|+|+|.+.+.... .++.|..+......+.++.+.+|||||+.+...........+.+++ +
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 489999999999999999999998655443 3456777777777789999999999999988655555555665554 3
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHHHhhchHHHHHHHHhhc-cC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGA-GL 193 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~ 193 (236)
.+++|+||||++++ +++..+...++.+++.||.+.+.++++|+|++|.. ...++++|+....+.++.++++|+ |+
T Consensus 81 ~~g~~~illVi~~~--~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l--~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 81 APGPHAFLLVVPLG--RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL--EGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred CCCCEEEEEEEECC--CcCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc--CCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 47899999997765 48889999999999999999999999999999986 334899999987789999999984 65
Q ss_pred CCCCcc---------c----cchhHHHHhcCCCCCCCCCC
Q 026593 194 GKHEFE---------D----YAVPVALVENSGRCSKNEND 220 (236)
Q Consensus 194 ~~~~~~---------~----~~i~~~~~~~~~~~~~~~~~ 220 (236)
+.+++. . ..|+.|+.+|++.+|++++|
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~ 196 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTNDMY 196 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 433221 1 57888899999999999875
No 6
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=3.8e-20 Score=149.17 Aligned_cols=149 Identities=24% Similarity=0.358 Sum_probs=117.1
Q ss_pred ccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEE
Q 026593 11 GFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNII 90 (236)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 90 (236)
|+..++...++...+..+.++-....+++|+++|.||+|||||+|+|++.....++..+.++.........+.+..+++|
T Consensus 13 ~~~~~~~~~se~~l~~~~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lw 92 (296)
T COG3596 13 GLLGLPSLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLW 92 (296)
T ss_pred hhccChHHHHHHHHHHhhhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEe
Confidence 55566667777777777777777889999999999999999999999987776776666666555666667788999999
Q ss_pred eCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 91 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 91 DTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
||||++|...-+.++.+.+++++ +..|+++++.+.+...++. +.++++.+.-.... .++++++|.+|..
T Consensus 93 DtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~~~---~~~i~~VtQ~D~a 161 (296)
T COG3596 93 DTPGLGDGKDKDAEHRQLYRDYL--PKLDLVLWLIKADDRALGT-DEDFLRDVIILGLD---KRVLFVVTQADRA 161 (296)
T ss_pred cCCCcccchhhhHHHHHHHHHHh--hhccEEEEeccCCCccccC-CHHHHHHHHHhccC---ceeEEEEehhhhh
Confidence 99999998887878888888888 6889999997765533544 45555555554433 8999999999986
No 7
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.80 E-value=2.8e-19 Score=135.67 Aligned_cols=125 Identities=17% Similarity=0.290 Sum_probs=93.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~ 117 (236)
.+|+++|.|++|||||+|+|+|.+ ..++++++.|.........+.+..+.++|+||.++...... -.+..++++....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~-ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE-EERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSH-HHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCc-HHHHHHHHHhhcC
Confidence 479999999999999999999999 46788999999988888888999999999999987654322 1233456666788
Q ss_pred CcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCch
Q 026593 118 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNY 172 (236)
Q Consensus 118 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~ 172 (236)
+|++++| +|+.++. .+.++..++.+.- .|+++|+||+|....++..+
T Consensus 79 ~D~ii~V--vDa~~l~-r~l~l~~ql~e~g-----~P~vvvlN~~D~a~~~g~~i 125 (156)
T PF02421_consen 79 PDLIIVV--VDATNLE-RNLYLTLQLLELG-----IPVVVVLNKMDEAERKGIEI 125 (156)
T ss_dssp SSEEEEE--EEGGGHH-HHHHHHHHHHHTT-----SSEEEEEETHHHHHHTTEEE
T ss_pred CCEEEEE--CCCCCHH-HHHHHHHHHHHcC-----CCEEEEEeCHHHHHHcCCEE
Confidence 9999999 5554443 3355666666553 99999999999875444333
No 8
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.78 E-value=6.4e-18 Score=122.92 Aligned_cols=114 Identities=18% Similarity=0.377 Sum_probs=85.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHH--HHHHHHHHHhcC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ--ALELIKGFLLNK 116 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~--~~~~i~~~l~~~ 116 (236)
+|+++|.+|+|||||+|+|++.+...++..++.|.........+++..+.++||||+.+....... ....+.+.+ .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI--S 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--C
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--H
Confidence 689999999999999999999876677777888877766667789999999999999876543321 222222223 6
Q ss_pred CCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeC
Q 026593 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk 161 (236)
.+|+++||++.+. ..+..+.+++++++ ...|+++|+||
T Consensus 79 ~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 8999999977543 34455667777773 22899999998
No 9
>COG1159 Era GTPase [General function prediction only]
Probab=99.76 E-value=8.7e-18 Score=137.33 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=98.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHH-HHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~-~~~i~~~l~ 114 (236)
+.-.|.++|+|++|||||+|+|.|.++..+++.+.+|........+.+...++++||||+........+. .+..+..+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl- 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL- 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh-
Confidence 4457899999999999999999999999999999888888888888888899999999998775333322 22222223
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
.++|+++||.+.+. .+...+...++.++... .|+++++||+|..++
T Consensus 84 -~dvDlilfvvd~~~-~~~~~d~~il~~lk~~~-----~pvil~iNKID~~~~ 129 (298)
T COG1159 84 -KDVDLILFVVDADE-GWGPGDEFILEQLKKTK-----TPVILVVNKIDKVKP 129 (298)
T ss_pred -ccCcEEEEEEeccc-cCCccHHHHHHHHhhcC-----CCeEEEEEccccCCc
Confidence 68999999955432 27778888888888722 799999999998744
No 10
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=6.8e-18 Score=139.22 Aligned_cols=136 Identities=19% Similarity=0.215 Sum_probs=104.0
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh-
Q 026593 24 IELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN- 102 (236)
Q Consensus 24 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~- 102 (236)
++.+++++....+-.+|++.|.|++|||||++.+++.++ .+.++|.+|......+...+...+.+|||||+.|.....
T Consensus 155 r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~Er 233 (346)
T COG1084 155 RDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEER 233 (346)
T ss_pred HHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHh
Confidence 445666777777779999999999999999999999985 678899999999999999999999999999998865322
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCCCC-CChH-HHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 103 YQALELIKGFLLNKTIDVLLYADRLDAYR-VDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 103 ~~~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+++.+.-..++ ..-.++|+|+++..... ++-+ +..+++.++..|. .|+++|+||+|..
T Consensus 234 N~IE~qAi~AL-~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~ 293 (346)
T COG1084 234 NEIERQAILAL-RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIA 293 (346)
T ss_pred cHHHHHHHHHH-HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEeccccc
Confidence 12211111111 13468999997765544 4433 3568888998885 7999999999986
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=2.4e-18 Score=147.78 Aligned_cols=162 Identities=20% Similarity=0.316 Sum_probs=119.1
Q ss_pred ccccccccCchhHHHHHHHHHHHHHhcC-CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe
Q 026593 7 REWAGFQQFPSATQNKLIELLSKLKQEN-VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF 85 (236)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
-++.|+.+|.++....+- ..++....+ .++++|+++|.|++|||||+|+|+|++...+++.+++|.........++++
T Consensus 148 ~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~ 226 (444)
T COG1160 148 EHGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR 226 (444)
T ss_pred hhccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe
Confidence 455677666665544321 111112222 257999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCCCCCCChH--HHHHHHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 86 TLNIIDTPGLVEAGYVNY--QALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 86 ~~~liDTPG~~d~~~~~~--~~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
.+.++||.|+-......+ +.++..+.......+|++++| +|+.. ++.+|.++...+.+.- +++++|+|||
T Consensus 227 ~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllv--iDa~~~~~~qD~~ia~~i~~~g-----~~~vIvvNKW 299 (444)
T COG1160 227 KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLV--IDATEGISEQDLRIAGLIEEAG-----RGIVIVVNKW 299 (444)
T ss_pred EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEE--EECCCCchHHHHHHHHHHHHcC-----CCeEEEEEcc
Confidence 999999999966544333 333333333333589999999 55545 8888999888877754 8999999999
Q ss_pred CCCCCCCCchHHHH
Q 026593 163 QLCPPDGLNYDVYC 176 (236)
Q Consensus 163 D~~~~~~~~~~~~~ 176 (236)
|+.+.+....+++.
T Consensus 300 Dl~~~~~~~~~~~k 313 (444)
T COG1160 300 DLVEEDEATMEEFK 313 (444)
T ss_pred ccCCchhhHHHHHH
Confidence 99854434555553
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=1.4e-17 Score=143.09 Aligned_cols=119 Identities=21% Similarity=0.278 Sum_probs=98.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCC--CChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~--~~~~~~~~~i~~~l~~ 115 (236)
..|+++|+|++|||||.|+|+|+..+.+++.+++|.........|.++.+.+|||+|+.+.. .....+.......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai-- 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAI-- 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHH--
Confidence 68999999999999999999999999999999999999999999999999999999997644 22222222222222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++||| +|... +++.|..+.+.|+..- +|+++|+||+|..
T Consensus 82 ~eADvilfv--VD~~~Git~~D~~ia~~Lr~~~-----kpviLvvNK~D~~ 125 (444)
T COG1160 82 EEADVILFV--VDGREGITPADEEIAKILRRSK-----KPVILVVNKIDNL 125 (444)
T ss_pred HhCCEEEEE--EeCCCCCCHHHHHHHHHHHhcC-----CCEEEEEEcccCc
Confidence 689999999 55544 8999999999888432 8999999999975
No 13
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.71 E-value=1.7e-16 Score=132.06 Aligned_cols=118 Identities=17% Similarity=0.274 Sum_probs=82.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH-HHHHHHHHHHhcCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY-QALELIKGFLLNKT 117 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~-~~~~~i~~~l~~~~ 117 (236)
+|+++|.+|+|||||+|+|+|.++..+++.+.+|..........++..+.+|||||+.+...... ...+....++ ..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH--hh
Confidence 68999999999999999999999877777777766555444445566799999999976532211 1222222333 58
Q ss_pred CcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 118 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 118 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+|+++||++.+.. .+. +..++..+... ..|+++|+||+|+.
T Consensus 80 aDvvl~VvD~~~~-~~~-~~~i~~~l~~~-----~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 80 VDLILFVVDSDQW-NGD-GEFVLTKLQNL-----KRPVVLTRNKLDNK 120 (270)
T ss_pred CCEEEEEEECCCC-Cch-HHHHHHHHHhc-----CCCEEEEEECeeCC
Confidence 9999999665431 222 24445555432 28999999999986
No 14
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=2.2e-16 Score=119.99 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=81.8
Q ss_pred EEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCC-ChHHHHHHHHHHHhcCCCc
Q 026593 41 LVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNKTID 119 (236)
Q Consensus 41 llvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~-~~~~~~~~i~~~l~~~~~~ 119 (236)
+++|.+|+|||||+|+|++......+..++.+.........+.+..+.+|||||+.+... ...........++ .++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAI--EEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHH--HhCC
Confidence 478999999999999999987555555666665556666677888999999999976543 1111222222222 5799
Q ss_pred EEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 120 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 120 ~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++++|++... ..+..+..+.+.+.... .|+++|+||+|+.
T Consensus 79 ~ii~v~d~~~-~~~~~~~~~~~~~~~~~-----~piiiv~nK~D~~ 118 (157)
T cd01894 79 VILFVVDGRE-GLTPADEEIAKYLRKSK-----KPVILVVNKVDNI 118 (157)
T ss_pred EEEEEEeccc-cCCccHHHHHHHHHhcC-----CCEEEEEECcccC
Confidence 9999966532 24444555556665432 8999999999986
No 15
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.71 E-value=3.3e-16 Score=135.04 Aligned_cols=123 Identities=24% Similarity=0.389 Sum_probs=96.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHH-HHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIKGFL 113 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~-~~~i~~~l 113 (236)
.+.++++++|+|++|||||+|+|++++.+.+.+++++|..........+|..+.++||.|+-++....++. .+.-+.
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~-- 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK-- 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH--
Confidence 36799999999999999999999999999999999999999999999999999999999997665433321 111111
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
....+|.++|| +|.+. .+..+...++.+.. ..|+++|.||.|+.++
T Consensus 293 ~i~~ADlvL~v--~D~~~~~~~~d~~~~~~~~~------~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 293 AIEEADLVLFV--LDASQPLDKEDLALIELLPK------KKPIIVVLNKADLVSK 339 (454)
T ss_pred HHHhCCEEEEE--EeCCCCCchhhHHHHHhccc------CCCEEEEEechhcccc
Confidence 22589999999 55444 56666776661211 2899999999999753
No 16
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=8.9e-16 Score=118.28 Aligned_cols=125 Identities=22% Similarity=0.338 Sum_probs=82.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH--HHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~--~~~~~i~~~l 113 (236)
++++|+++|.+|+|||||+|+|++.........++.+..........++..+.+|||||+.+...... +.........
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 35799999999999999999999987555555555555555555566788899999999976532111 1111111111
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
...++|++++|++... ..+.....++..+... ..|+++++||+|+.+
T Consensus 81 ~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 81 AIERADVVLLVIDATE-GITEQDLRIAGLILEE-----GKALVIVVNKWDLVE 127 (174)
T ss_pred HHhhcCeEEEEEeCCC-CcchhHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence 2258999999966543 2344344444433322 289999999999863
No 17
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.70 E-value=6.3e-16 Score=118.10 Aligned_cols=122 Identities=17% Similarity=0.270 Sum_probs=83.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHH-HHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL-ELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~-~~i~~~l~ 114 (236)
..++|+++|++|+|||||+|++++.........+..+...........+..+.+|||||+.+......+.. ......
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-- 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA-- 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH--
Confidence 46799999999999999999999987655554444443333334444567899999999977654332221 111111
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+|++++|++.... ++..+..+...+... ..|+++|+||+|+.
T Consensus 80 ~~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~ 124 (168)
T cd04163 80 LKDVDLVLFVVDASEP-IGEGDEFILELLKKS-----KTPVILVLNKIDLV 124 (168)
T ss_pred HHhCCEEEEEEECCCc-cCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence 2689999999766532 455555666666543 27999999999985
No 18
>PRK15494 era GTPase Era; Provisional
Probab=99.70 E-value=4.1e-16 Score=133.55 Aligned_cols=122 Identities=18% Similarity=0.260 Sum_probs=86.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCC-ChHHHHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~-~~~~~~~~i~~~l~ 114 (236)
+.++|+++|.+|+|||||+|+|+|.++..+++.+.+|.........+++..+.+|||||+.+... ......+....++
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l- 129 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL- 129 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh-
Confidence 45799999999999999999999998766666555555555555667888999999999965432 2222222222222
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|+++||++... .+...+..++..+... ..|.++|+||+|+.
T Consensus 130 -~~aDvil~VvD~~~-s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~ 173 (339)
T PRK15494 130 -HSADLVLLIIDSLK-SFDDITHNILDKLRSL-----NIVPIFLLNKIDIE 173 (339)
T ss_pred -hhCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCc
Confidence 58999999955322 3666666666666543 15778999999985
No 19
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.70 E-value=1.4e-15 Score=118.98 Aligned_cols=121 Identities=18% Similarity=0.236 Sum_probs=81.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-ccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh---HHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKG 111 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~---~~~~~~i~~ 111 (236)
..++|+++|.+|+|||||+|++++.. ...++..++.+.....+.. + ..+.+|||||+....... .++...+..
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 66899999999999999999999875 3344444444443333322 2 378999999987654322 223333334
Q ss_pred HHhc-CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLN-KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~-~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++.. ..++++++|++... +++..+..++..+... ..|+++|+||+|+.
T Consensus 94 ~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~ 142 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRER-----GIPVLIVLTKADKL 142 (179)
T ss_pred HHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 4432 35789999965543 3777666666655442 28999999999985
No 20
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.69 E-value=1.1e-15 Score=116.10 Aligned_cols=119 Identities=24% Similarity=0.373 Sum_probs=82.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH-HHHHHHHHHHhcC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY-QALELIKGFLLNK 116 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~-~~~~~i~~~l~~~ 116 (236)
++|+++|++|+|||||+|++++.........++.+.........+.+..+.+|||||+.+...... ........++ .
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI--E 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH--h
Confidence 589999999999999999999987655555666665555556666788999999999977653211 1111122222 5
Q ss_pred CCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.+|++++|++++. ..+..+...+.. ....|+++|+||+|+.+
T Consensus 80 ~~~~~v~v~d~~~-~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 80 EADLVLFVIDASR-GLDEEDLEILEL-------PADKPIIVVLNKSDLLP 121 (157)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHh-------hcCCCEEEEEEchhcCC
Confidence 8999999977653 233333433332 12289999999999863
No 21
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.69 E-value=4.7e-16 Score=120.06 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=78.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe-eEEEEeCCCCCCCCCC----hHHHHHHHHHHH
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYV----NYQALELIKGFL 113 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~liDTPG~~d~~~~----~~~~~~~i~~~l 113 (236)
+|+++|.+|+|||||+|+|.+... .++..+..+..+......+.+. .+.+|||||+.+.... ...+.+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~---- 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI---- 76 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHH----
Confidence 689999999999999999998764 3444444444444444555665 8999999998543221 12222222
Q ss_pred hcCCCcEEEEEEeCCCC-CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++.... ........+.+.+.+........|+++|+||+|+.
T Consensus 77 --~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 77 --ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred --HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 368999999776543 11122245556665543222248999999999986
No 22
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=5.3e-16 Score=138.58 Aligned_cols=124 Identities=21% Similarity=0.270 Sum_probs=91.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCC--hHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV--NYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~--~~~~~~~i~~~l 113 (236)
...+|+++|.+|+|||||+|+|++.....++..++.+.........+++..+.+|||||+...... ..+....++...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 468999999999999999999999886566777777776666667778889999999998543221 123333333222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
....+|++++|++... ..+..+..++..+... ..|+++|+||+|+.
T Consensus 290 ~i~~ad~vilV~Da~~-~~s~~~~~~~~~~~~~-----~~piIiV~NK~Dl~ 335 (472)
T PRK03003 290 AIEAAEVAVVLIDASE-PISEQDQRVLSMVIEA-----GRALVLAFNKWDLV 335 (472)
T ss_pred HHhcCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 2358999999977643 3666666666655542 28999999999996
No 23
>PRK00089 era GTPase Era; Reviewed
Probab=99.69 E-value=6.8e-16 Score=129.87 Aligned_cols=122 Identities=19% Similarity=0.302 Sum_probs=85.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHH-HHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~-~~~~i~~~l~ 114 (236)
+.-.|+++|++|+|||||+|+|+|.++..+++.+.++..........++..++++||||+.+......+ ........+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~- 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL- 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH-
Confidence 345799999999999999999999998777766655554444444445578999999999765422222 112222222
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|+++||++.+. .++..+..+++.+... ..|+++|+||+|+.
T Consensus 83 -~~~D~il~vvd~~~-~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~ 126 (292)
T PRK00089 83 -KDVDLVLFVVDADE-KIGPGDEFILEKLKKV-----KTPVILVLNKIDLV 126 (292)
T ss_pred -hcCCEEEEEEeCCC-CCChhHHHHHHHHhhc-----CCCEEEEEECCcCC
Confidence 58999999976654 3666666666666532 27999999999996
No 24
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=5.5e-16 Score=137.09 Aligned_cols=124 Identities=21% Similarity=0.340 Sum_probs=91.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH--HHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~--~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|+|++.+...+++.++.+.........+++..+.+|||||+.+.....+ +.....+...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 45899999999999999999999988666677777776666666677888999999999976654332 2222222111
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
....+|++++|++... .++..+..++..+.+. ..|+++|+||+|+.
T Consensus 251 ~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 251 AIERADVVLLVLDATE-GITEQDLRIAGLILEA-----GKALVIVVNKWDLV 296 (429)
T ss_pred HHHhCCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 2258999999976643 3677777766665543 28999999999996
No 25
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.68 E-value=1.6e-15 Score=133.90 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=86.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHH-HHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIKGFL 113 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~-~~~i~~~l 113 (236)
.+.++|+++|++|+|||||+|+|++.+...++..+++|.........+++..+.+|||||+.+.....+.. ......++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 36689999999999999999999998766777788777777677778889999999999996543221111 11111122
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++.+. ..+..+. ++..+.. . ..|+++|+||+|+.
T Consensus 281 --~~aD~il~V~D~s~-~~s~~~~-~l~~~~~---~--~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 281 --KQADLVIYVLDASQ-PLTKDDF-LIIDLNK---S--KKPFILVLNKIDLK 323 (442)
T ss_pred --hhCCEEEEEEECCC-CCChhHH-HHHHHhh---C--CCCEEEEEECccCC
Confidence 58999999977653 2333333 4443332 1 27999999999985
No 26
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.68 E-value=1.1e-15 Score=117.78 Aligned_cols=122 Identities=19% Similarity=0.240 Sum_probs=78.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHH--HHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL--ELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~--~~i~~~l~~ 115 (236)
.+|+++|.+|+|||||+|++++... .++..+..+.........+.+..+.+|||||+.+......... ..+. .+ .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~-~ 77 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-AL-A 77 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHH-HH-H
Confidence 3799999999999999999999874 2333334444444444555678999999999865432211111 1111 11 1
Q ss_pred CCCcEEEEEEeCCCCC-CC-hHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VD-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~-~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...|++++|++..... ++ .....++..+...+. ..|+++|+||+|+.
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~ 126 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLL 126 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccC
Confidence 2468999997664322 22 223456667765542 28999999999996
No 27
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.68 E-value=1.5e-15 Score=130.51 Aligned_cols=125 Identities=19% Similarity=0.181 Sum_probs=80.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee-CCeeEEEEeCCCCCCCCCChHHHHHHHHHHH-
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFL- 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l- 113 (236)
..++|+++|.+|+|||||+|+|++.+. .+.+.+..|..+......+ ++..+.+|||||+..... +.....++..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~--~~lie~f~~tle 264 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLP--HELVAAFRATLE 264 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEEeCCCceEEEEecCcccccCC--HHHHHHHHHHHH
Confidence 348999999999999999999999873 4555555566666555555 567999999999843211 11112222221
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
....+|++++|++............+...+... +. ...|+++|+||+|+.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLL 314 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCC
Confidence 125899999997764322222222233444433 21 127999999999986
No 28
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.67 E-value=2e-15 Score=125.81 Aligned_cols=186 Identities=18% Similarity=0.308 Sum_probs=108.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccC-------cCccc--ceEEEEeeeCC--eeEEEEeCCCCCCCCCChH-
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSF-------QSEAL--RPVMVSRSKGG--FTLNIIDTPGLVEAGYVNY- 103 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~- 103 (236)
-.++|+++|.+|+|||||+|+|++......... ...+. .........+| ..+.+|||||+++......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 358999999999999999999999876543321 11111 11222334455 3699999999987643211
Q ss_pred --HHHHHH----HHHH------------hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 104 --QALELI----KGFL------------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 104 --~~~~~i----~~~l------------~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+...+ ..++ ....+|+++|+++.....++..|.++++.+.+. .|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~------v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKR------VNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhcc------CCEEEEEECCCcC
Confidence 111111 1111 124689999996655445777788888888651 7999999999986
Q ss_pred CCCCCchHHHHhhchHHHHHHHHhh-ccCCCCCc--c-----------ccchhHHHH------hcCCCCCCCCCCceecc
Q 026593 166 PPDGLNYDVYCSKRSDALLKTIRLG-AGLGKHEF--E-----------DYAVPVALV------ENSGRCSKNENDEKVQF 225 (236)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~~--~-----------~~~i~~~~~------~~~~~~~~~~~~~~~~~ 225 (236)
..+ ....+ .+.+.+.++.. ..+..+.. . ...+|..+. ++.|...-.+.|.|..-
T Consensus 157 ~~~--e~~~~----k~~i~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Pfavi~s~~~~~~~g~~~~~R~y~WG~~ 230 (276)
T cd01850 157 TPE--ELKEF----KQRIMEDIEEHNIKIYKFPEDEEDDETIEENKKLRSLIPFAVVGSNEEVEVNGKKVRGRKYPWGVV 230 (276)
T ss_pred CHH--HHHHH----HHHHHHHHHHcCCceECCCCCcccHHHHHHHHhhccCCCcEEEecCceeecCCcEEEEecCCccEE
Confidence 221 12222 23344444443 33322211 0 023343322 23345566788888888
Q ss_pred cccCCccc
Q 026593 226 LCSHSVHT 233 (236)
Q Consensus 226 ~~~~~~~~ 233 (236)
.+++.=|+
T Consensus 231 ~v~n~~h~ 238 (276)
T cd01850 231 EVENEEHC 238 (276)
T ss_pred eecCcccc
Confidence 88876553
No 29
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.67 E-value=2.2e-15 Score=133.60 Aligned_cols=122 Identities=22% Similarity=0.307 Sum_probs=84.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHH-HHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIKGFL 113 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~-~~~i~~~l 113 (236)
+..++|+++|.+|+|||||+|+|++.+...+++.++.|.........+++..+.+|||||+.++....+.. .+....+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~- 291 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA- 291 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH-
Confidence 35689999999999999999999998866677777777766666777788999999999997543221110 1111111
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
...+|++++|++.+. ..+..+..++.. ....|+++|+||+|+.+
T Consensus 292 -~~~aD~il~VvD~s~-~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 292 -IEEADLVLLVLDASE-PLTEEDDEILEE-------LKDKPVIVVLNKADLTG 335 (449)
T ss_pred -HHhCCEEEEEecCCC-CCChhHHHHHHh-------cCCCCcEEEEEhhhccc
Confidence 258999999966643 233333333322 12289999999999963
No 30
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.67 E-value=3.7e-15 Score=118.85 Aligned_cols=124 Identities=19% Similarity=0.149 Sum_probs=76.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe-eEEEEeCCCCCCCCCChHHHHHHHHHHH-h
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFL-L 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~liDTPG~~d~~~~~~~~~~~i~~~l-~ 114 (236)
.++|+++|++|+|||||+|++++.... ....+..+..+......+.+. .+.+|||||+.+.... .....+...+ .
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~~ 117 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH--QLVEAFRSTLEE 117 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCCH--HHHHHHHHHHHH
Confidence 479999999999999999999998642 222222333333334444444 8999999998654221 1111121111 1
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+|++++|++.+..........+.+.+...... ..|+++|+||+|+.
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~--~~~viiV~NK~Dl~ 166 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE--DIPMILVLNKIDLL 166 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC--CCCEEEEEEccccC
Confidence 24799999997765422222223344444443222 27999999999986
No 31
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.67 E-value=2e-15 Score=120.00 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=78.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCc-C---cccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ-S---EALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
+++|+++|++|+|||||+|+|+|.........+ . .+.....+.. .....+.+|||||+.+.....+++++.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~--- 76 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEM--- 76 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHh---
Confidence 478999999999999999999986432211111 1 1111111111 1234789999999987665544443322
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+.|+++++ .+. +++..+..+++.+.+. + .|+++|+||+|+.
T Consensus 77 -~~~~~d~~l~v--~~~-~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~ 120 (197)
T cd04104 77 -KFSEYDFFIII--SST-RFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRD 120 (197)
T ss_pred -CccCcCEEEEE--eCC-CCCHHHHHHHHHHHHh-C----CCEEEEEecccch
Confidence 22578999998 433 6888899999988875 2 7899999999986
No 32
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.66 E-value=2.3e-15 Score=133.21 Aligned_cols=120 Identities=22% Similarity=0.222 Sum_probs=90.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCC-hHHHHHHHHHHHhcCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLLNKT 117 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~-~~~~~~~i~~~l~~~~ 117 (236)
+|+++|++|+|||||+|+|++.....+++.++.+.........+.+..+.+|||||+...... ..........++ .+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~--~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAI--EE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHH--hh
Confidence 489999999999999999999887677788888877777788889999999999998543211 122222222233 57
Q ss_pred CcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 118 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 118 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
+|++++|++... .++..+..+.+.+++. ..|+++|+||+|+..
T Consensus 79 ad~vl~vvD~~~-~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~ 121 (429)
T TIGR03594 79 ADVILFVVDGRE-GLTPEDEEIAKWLRKS-----GKPVILVANKIDGKK 121 (429)
T ss_pred CCEEEEEEeCCC-CCCHHHHHHHHHHHHh-----CCCEEEEEECccCCc
Confidence 999999966532 3677777777777753 289999999999863
No 33
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.66 E-value=1.8e-15 Score=116.57 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=74.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEE--EEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM--VSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++++...... ..+ ....... .........+.+|||||......... .+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~-- 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIP-TIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQR-------LSI-- 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-cCC-cchheEEEEEEECCEEEEEEEEECCCCCcchHHHH-------HHh--
Confidence 6899999999999999999998764221 111 1111111 12222335788999999865432111 111
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCcc-ccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ-IWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~-~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++..........+++.+.+..+.. ...|+++|+||+|+.+
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 71 SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 47899999988865332222345666666654422 3489999999999963
No 34
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=2.6e-15 Score=134.12 Aligned_cols=124 Identities=18% Similarity=0.227 Sum_probs=90.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCC-CChHHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG-YVNYQALELIKGF 112 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~-~~~~~~~~~i~~~ 112 (236)
.....+|+++|.+|+|||||+|+|++.....+...++.+.........+.+..+.+|||||+.... .....+......+
T Consensus 35 ~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 35 GGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 345579999999999999999999998766667777777666666777888999999999986322 1222222222223
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+ .++|++|+|++... ..+..+..+...+... ..|+++|+||+|+.
T Consensus 115 ~--~~aD~il~VvD~~~-~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~ 159 (472)
T PRK03003 115 M--RTADAVLFVVDATV-GATATDEAVARVLRRS-----GKPVILAANKVDDE 159 (472)
T ss_pred H--HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence 3 58999999977653 3555566677766642 28999999999985
No 35
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.65 E-value=2.5e-15 Score=115.05 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++.+..... ...++...........++ ..+.+|||||...+...... +.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~-- 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDL-------YI-- 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHH-------Hh--
Confidence 699999999999999999999766322 222222222233334444 35778999998654332211 11
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++... +. ....+++.+.+.... ...|+++|+||+|+.+
T Consensus 71 ~~~~~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 120 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFN-DLQDLREQILRVKDT-ENVPMVLVGNKCDLED 120 (163)
T ss_pred hcCCEEEEEEECCCHHHHH-HHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 4899999998876432 32 224455666554322 2389999999999863
No 36
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.65 E-value=2.2e-15 Score=115.73 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=74.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC--CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|++|+|||||++++++..... ...+.............. ...+.+|||||..... .....++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~-- 70 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL-------EVRNEFY-- 70 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH-------HHHHHHh--
Confidence 589999999999999999999887422 111222111112222333 3478899999984321 1111222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCc---cccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK---QIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~---~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +. ....++..+.+.... ....|+++|+||+|+.
T Consensus 71 ~~~d~~ilv~D~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 71 KDTQGVLLVYDVTDRQSFE-ALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred ccCCEEEEEEECCCHHHHH-hHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 5899999998775432 32 234567777665542 1348999999999986
No 37
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=2.6e-15 Score=133.03 Aligned_cols=124 Identities=23% Similarity=0.346 Sum_probs=90.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH--HHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~--~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|+|++.+...++..++.+.........+.+..+.+|||||+........ +.....+...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 56999999999999999999999988767777777776666566667888999999999976554432 1111111111
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
....+|++++|++... .++..+..++..+.+. ..|+++|+||+|+.
T Consensus 252 ~~~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 252 AIERADVVLLVIDATE-GITEQDLRIAGLALEA-----GRALVIVVNKWDLV 297 (435)
T ss_pred HHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCC
Confidence 2258899999966543 3677777766665543 28999999999986
No 38
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=4.1e-15 Score=131.82 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=89.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCC-ChHHHHHHHHHHHhcC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNK 116 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~-~~~~~~~~i~~~l~~~ 116 (236)
++|+++|.+|+|||||+|+|++.....++..++.+.........+.+..+.+|||||+.+... ...........++ .
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAI--E 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHH--H
Confidence 489999999999999999999988766777777777777777788889999999999976322 1111222122222 5
Q ss_pred CCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++|+++||++... .++..+..+..++++. ..|+++|+||+|+.
T Consensus 80 ~ad~il~vvd~~~-~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~ 122 (435)
T PRK00093 80 EADVILFVVDGRA-GLTPADEEIAKILRKS-----NKPVILVVNKVDGP 122 (435)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence 8999999966543 3666667777777654 28999999999974
No 39
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.64 E-value=4.1e-15 Score=113.20 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=77.4
Q ss_pred EEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEE
Q 026593 42 VMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVL 121 (236)
Q Consensus 42 lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~i 121 (236)
|+|.+|+|||||+|++++.. ..++..++.+.........+.+..+.+|||||+.+......+. ...+.++...++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDE-KVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhH-HHHHHHhcCCCCcEE
Confidence 57999999999999999986 3445555556655556666778899999999997765432111 111223323589999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 122 LYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 122 l~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
++|++.. +.. ....++..+.+. ..|+++|+||+|+.+
T Consensus 79 i~v~d~~--~~~-~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 79 VNVVDAT--NLE-RNLYLTLQLLEL-----GLPVVVALNMIDEAE 115 (158)
T ss_pred EEEeeCC--cch-hHHHHHHHHHHc-----CCCEEEEEehhhhcc
Confidence 9996554 322 223344444332 289999999999963
No 40
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=3.2e-15 Score=115.12 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=75.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|++|+|||||++++.+........ +............+++ ..+.+|||||.... ......++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~- 73 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF-------RTITQSYY- 73 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHHh-
Confidence 4799999999999999999998765422211 1111122233344555 47899999996322 11122222
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++... +. ....++..+..... ...|+++|+||+|+...
T Consensus 74 -~~~d~~llv~d~~~~~s~~-~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 74 -RSANGAIIAYDITRRSSFE-SVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred -ccCCEEEEEEECcCHHHHH-hHHHHHHHHHHhCC--CCCcEEEEEECcccccc
Confidence 4789999998876432 32 23456666665432 23789999999999643
No 41
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.64 E-value=5.7e-15 Score=113.23 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=74.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|.+|+|||||++++++... .....+............++. .+.+|||||..+..... ..++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~- 71 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMR-------EQYM- 71 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHH-------HHHH-
Confidence 47999999999999999999997763 222222222222223344554 67899999986543222 1222
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++... +.. -..++..+..... ....|+++|+||+|+.+
T Consensus 72 -~~~~~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 72 -RTGEGFLLVFSVTDRGSFEE-VDKFHTQILRVKD-RDEFPMILVGNKADLEH 121 (164)
T ss_pred -hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhC-CCCCCEEEEeeCccccc
Confidence 4789999998875422 222 2344555554332 12379999999999863
No 42
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.64 E-value=4.3e-15 Score=113.65 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=75.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
.+|+++|++|+|||||++++++.+... ...+..+.........+++. .+.+|||||.... ...+..++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-------~~~~~~~~-- 70 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF-------RSLIPSYI-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh--
Confidence 489999999999999999999887533 22233333333344444553 5899999996322 12222222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +... ..++..+....+. ..|+++|+||+|+.
T Consensus 71 ~~~~~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~~iilv~nK~D~~ 118 (161)
T cd01861 71 RDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGN--DVIIVLVGNKTDLS 118 (161)
T ss_pred ccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCC--CCEEEEEEEChhcc
Confidence 5889999998876432 4332 3555655554432 38999999999995
No 43
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=8.6e-15 Score=113.79 Aligned_cols=120 Identities=23% Similarity=0.281 Sum_probs=91.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-ccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh---HHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKG 111 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~---~~~~~~i~~ 111 (236)
...-|+++|++++|||||||+|++.+ .+.++..|+.|+....+... +. +.++|.||++=...+. +.+.+.+.+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--DE-LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--Cc-EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 44699999999999999999999965 67888888888766665542 22 7899999997555333 455666667
Q ss_pred HHhc-CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLN-KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~-~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++.. ....+++++ +|..+ +...|.++++++.+.- .|+++|+||+|..
T Consensus 100 YL~~R~~L~~vvll--iD~r~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DKi 148 (200)
T COG0218 100 YLEKRANLKGVVLL--IDARHPPKDLDREMIEFLLELG-----IPVIVVLTKADKL 148 (200)
T ss_pred HHhhchhheEEEEE--EECCCCCcHHHHHHHHHHHHcC-----CCeEEEEEccccC
Confidence 7754 346777777 45544 6777899999988864 9999999999987
No 44
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.9e-15 Score=115.11 Aligned_cols=125 Identities=14% Similarity=0.175 Sum_probs=88.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
-++|+|+|.+|+|||.|+-++.+...... -..............++|. ++.+|||.|+..++.....+.
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~-~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syY-------- 79 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTES-YISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYY-------- 79 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchh-hcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhc--------
Confidence 48999999999999999999998875322 1222222333444455554 789999999966553332222
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHH
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV 174 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~ 174 (236)
.++|+||+|+++.... |. .-..|+..+.+....+ .|.++|+||+|+.+....+.++
T Consensus 80 -R~ahGii~vyDiT~~~SF~-~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~~~ 136 (205)
T KOG0084|consen 80 -RGAHGIIFVYDITKQESFN-NVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVSTEE 136 (205)
T ss_pred -cCCCeEEEEEEcccHHHhh-hHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCHHH
Confidence 4999999999996544 43 3467888888887665 7999999999997555544443
No 45
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=1e-14 Score=124.36 Aligned_cols=125 Identities=17% Similarity=0.169 Sum_probs=85.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee-CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
..|.++|.++||||||+|+|++.+. .+++++.+|..+......+ ++..+.+|||||+.+...........+.+++ .
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--e 235 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--E 235 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--h
Confidence 4789999999999999999998774 4677777787777777766 5568999999999764433212211222222 4
Q ss_pred CCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++++++|++++.....+....+...+......-...|+++|+||+|+.
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 7899999977653221122234555565543221238999999999986
No 46
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.62 E-value=2.6e-15 Score=115.88 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=75.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC--CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++++...... ..+. ............ ...+.+|||||+.+.........
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~--------- 69 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTE-YVPT-VFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSY--------- 69 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCc-eeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhc---------
Confidence 5899999999999999999998874211 1111 111111222223 34789999999876533222111
Q ss_pred CCCcEEEEEEeCCC-CCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++. .++......++..+....+ ..|+++|+||+|+.+
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 70 PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRD 118 (171)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhh
Confidence 47899999988764 2244444556666665544 399999999999863
No 47
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.62 E-value=9.3e-15 Score=112.32 Aligned_cols=117 Identities=19% Similarity=0.230 Sum_probs=73.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
+++|+++|.+|+|||||+++++.... .....++...........++. .+.+|||||.......... ++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~- 70 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDL-------YM- 70 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHH-------HH-
Confidence 36899999999999999999986542 222222222222233344443 5679999998554332221 11
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++... +... ..++..+..... ....|+++|+||+|+.+
T Consensus 71 -~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 71 -KNGQGFVLVYSITAQSTFNDL-QDLREQILRVKD-TEDVPMILVGNKCDLED 120 (164)
T ss_pred -hhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence 4789999998875432 3322 345555554322 22389999999999963
No 48
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.62 E-value=8.3e-15 Score=112.45 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=72.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|++|+|||||++++++...... ..++...........++ ..+.+|||||..+...... .++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~-------~~~-- 69 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDD--YDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRD-------QYM-- 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHH-------HHH--
Confidence 4899999999999999999998764221 22222222223333444 4678999999865432211 112
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +.. -..+...+...... ...|+++|+||+|+.+
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 70 RTGEGFLLVYSITDRQSFEE-IKKFREQILRVKDR-DDVPIVLVGNKCDLES 119 (164)
T ss_pred hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 3789999998876422 222 23344445444322 2379999999999863
No 49
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.62 E-value=8.4e-15 Score=136.74 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=91.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh--HHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN--YQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~--~~~~~~i~~~l 113 (236)
...+|+++|.+|+|||||+|+|++.+...++..++++.........+++..+.+|||||+....... .+.+..++...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 3589999999999999999999999866667777777776666667788899999999986533222 23333333222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
....+|++++|++... ..+..+..++..+.+. ..|+++|+||+|+.
T Consensus 529 ~i~~advvilViDat~-~~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~ 574 (712)
T PRK09518 529 AIERSELALFLFDASQ-PISEQDLKVMSMAVDA-----GRALVLVFNKWDLM 574 (712)
T ss_pred HhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEEchhcC
Confidence 2368999999976643 3667666666655442 28999999999996
No 50
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.62 E-value=2.2e-14 Score=114.07 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=76.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCC-ChHHHHHHHHHHHh
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGY-VNYQALELIKGFLL 114 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~-~~~~~~~~i~~~l~ 114 (236)
++|+++|.+|+|||||++++++.+.... ..+..+.........+++ ..+.+|||||+.+... ...+.......++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~- 78 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL- 78 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh-
Confidence 5899999999999999999998764322 122222222223344566 4678999999865432 2222222111122
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhC-ccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFG-KQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~-~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++++... +. .-..+.+.+..... .....|+++|+||+|+.
T Consensus 79 -~~ad~iilv~D~~~~~S~~-~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 79 -RNSRAFILVYDICSPDSFH-YVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred -ccCCEEEEEEECCCHHHHH-HHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 5899999998875422 22 12345555555441 12338999999999995
No 51
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.62 E-value=5.5e-15 Score=113.14 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=71.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee----CCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK----GGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
++|+++|.+|+|||||++++++...... ..+............+ ....+.+|||||..+.. .....++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~ 72 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKD-YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD-------AITKAYY 72 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH-------HhHHHHh
Confidence 4899999999999999999998753211 1111111111122222 24579999999964321 1122222
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++... +. ....++..+..... ..|+++|+||+|+..
T Consensus 73 --~~~~~~v~v~d~~~~~s~~-~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 73 --RGAQACILVFSTTDRESFE-AIESWKEKVEAECG---DIPMVLVQTKIDLLD 120 (162)
T ss_pred --cCCCEEEEEEECCCHHHHH-HHHHHHHHHHHhCC---CCCEEEEEEChhccc
Confidence 5899999998876432 32 22345555554433 389999999999863
No 52
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.62 E-value=8.7e-15 Score=112.98 Aligned_cols=117 Identities=14% Similarity=0.205 Sum_probs=73.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|++|+|||||++++++.+.... ..+..............+ ..+.+|||||...... ....++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------~~~~~~- 73 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS-FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT-------ITTAYY- 73 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc-cccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH-------HHHHHh-
Confidence 47999999999999999999998764221 112221122222333444 4689999999743221 111222
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++... +... ..++..+..... ...|+++|+||+|+.+
T Consensus 74 -~~ad~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 74 -RGAMGIILVYDITDEKSFENI-RNWMRNIEEHAS--EDVERMLVGNKCDMEE 122 (167)
T ss_pred -CCCCEEEEEEECcCHHHHHhH-HHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 4899999998875422 3322 345555555432 2379999999999964
No 53
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.62 E-value=6.3e-15 Score=114.90 Aligned_cols=114 Identities=21% Similarity=0.277 Sum_probs=75.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++...... ....++...........++ ..+.+|||||..+....... ++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~-- 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL-------SY-- 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhh-------hc--
Confidence 68999999999999999999977642 2222222222222334455 46789999999665432211 11
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +......|+..+....+ ..|+++|+||+|+.
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~ 118 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLR 118 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence 4899999998886532 43333346666665433 38999999999985
No 54
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=9.1e-15 Score=115.52 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=72.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++.+.........+............+++ ..+.||||||...... ....++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~-- 71 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS-------VTHAYY-- 71 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH-------hhHHHc--
Confidence 58999999999999999999987642211111111122222233444 4788999999632211 111222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +.. -..++..+.+.... ..|+++|+||+|+.
T Consensus 72 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~i~~~~~~--~~piiiv~NK~Dl~ 119 (191)
T cd04112 72 RDAHALLLLYDITNKASFDN-IRAWLTEIKEYAQE--DVVIMLLGNKADMS 119 (191)
T ss_pred cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCC--CCcEEEEEEcccch
Confidence 5799999998875422 222 24466666665433 37999999999986
No 55
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.62 E-value=5.8e-15 Score=115.44 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=75.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++.+.... ....++...........++ ..+.+|||||...+...... ..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~---------~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPL---------CY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchh---------hc
Confidence 68999999999999999999987632 1222221122222333444 46889999998544322211 11
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +......|+..+.+..+ ..|+++|+||+|+.
T Consensus 71 ~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~ 118 (178)
T cd04131 71 PDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLR 118 (178)
T ss_pred CCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhh
Confidence 5899999999985432 43333567777777654 28999999999985
No 56
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.61 E-value=8.2e-15 Score=112.67 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=74.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|++|+|||||++++++.+.... ..+..+..........++. .+.+|||||..... .....++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~-- 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD-SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR-------AITSAYY-- 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------HHHHHHH--
Confidence 6999999999999999999998874322 2222222223333444453 68899999974221 1112222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..++++++|+++.... +.. -.+++..+.+.... ..|+++|+||+|+..
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 74 RGAVGALLVYDITKKQTFEN-VERWLKELRDHADS--NIVIMLVGNKSDLRH 122 (165)
T ss_pred CCCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 4789999998875322 322 23466666655432 279999999999863
No 57
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.61 E-value=2.8e-15 Score=116.18 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=75.2
Q ss_pred EEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC-CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcE
Q 026593 42 VMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 120 (236)
Q Consensus 42 lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~ 120 (236)
++|++|+|||||+|+|++... .++..+..+..+......+. +..+.+|||||+.+.....+.....+...+ .++|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHI--RRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHH--hccCE
Confidence 579999999999999999875 44555555555555555667 889999999998643221111111111111 47999
Q ss_pred EEEEEeCCCCC-----CCh-HHHHHHHHHHHhhCc-----cccCcEEEEEeCCCCC
Q 026593 121 LLYADRLDAYR-----VDD-LDRQIIKAVTGTFGK-----QIWRKSLLVLTHAQLC 165 (236)
Q Consensus 121 il~v~~~d~~~-----~~~-~~~~~l~~l~~~~~~-----~~~~~~ivv~tk~D~~ 165 (236)
+++|++..... .+. ....+...+...... ....|+++|+||+|+.
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 133 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD 133 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC
Confidence 99997664321 111 112333444332211 1238999999999986
No 58
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.61 E-value=9.5e-15 Score=112.55 Aligned_cols=117 Identities=11% Similarity=0.128 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++++....... .+..+..........++ ..+.+|||||....... ...++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~-------~~~~~-- 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAF-VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTI-------TTAYY-- 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH-------HHHHc--
Confidence 68999999999999999999987742211 11111111112222233 46899999997432211 11111
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
.++|++++|+++.... +.. -..|+..+...... ..|+++|+||+|+.+.
T Consensus 72 ~~~~~~l~v~d~~~~~s~~~-~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~ 121 (165)
T cd01865 72 RGAMGFILMYDITNEESFNA-VQDWSTQIKTYSWD--NAQVILVGNKCDMEDE 121 (165)
T ss_pred cCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhCCC--CCCEEEEEECcccCcc
Confidence 5899999998875322 222 24456666554322 3789999999999633
No 59
>PTZ00369 Ras-like protein; Provisional
Probab=99.61 E-value=1.3e-14 Score=114.47 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=75.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||++++++..... ...++...........++ ..+.+|||||..++......+ .
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~-------~ 74 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQY-------M 74 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHH-------h
Confidence 56899999999999999999999876422 121211122222233344 357789999987654332221 1
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +.. -..+...+...... ...|+++|+||+|+.
T Consensus 75 --~~~d~iilv~D~s~~~s~~~-~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 75 --RTGQGFLCVYSITSRSSFEE-IASFREQILRVKDK-DRVPMILVGNKCDLD 123 (189)
T ss_pred --hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence 4899999998875432 322 24455555554322 237999999999985
No 60
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.61 E-value=7.4e-15 Score=113.53 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=73.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++++........ +..+..........++ ..+.+|||||.... ....+.++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~-- 74 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDGKQIKLQIWDTAGQESF-------RSITRSYY-- 74 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh--
Confidence 799999999999999999999876433222 1111222222223333 47899999996322 11122223
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|+++.... +.. -..|+..+..... ...|+++|+||+|+...
T Consensus 75 ~~~d~il~v~d~~~~~s~~~-~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 75 RGAAGALLVYDITRRETFNH-LTSWLEDARQHSN--SNMTIMLIGNKCDLESR 124 (168)
T ss_pred ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCC--CCCcEEEEEECcccccc
Confidence 4899999998875322 222 2345665655432 23899999999998633
No 61
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.61 E-value=1.5e-14 Score=110.93 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=75.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|.+|+|||||+++++....... ..++...........++. .+.+|||||...+......+ +
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~---~----- 70 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEK--YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLY---I----- 70 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHH---H-----
Confidence 36899999999999999999997764221 222222223333444554 57789999986554332221 1
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +.. ...++..+..... ....|+++|+||+|+.
T Consensus 71 -~~ad~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piviv~nK~Dl~ 119 (163)
T cd04176 71 -KNGQGFIVVYSLVNQQTFQD-IKPMRDQIVRVKG-YEKVPIILVGNKVDLE 119 (163)
T ss_pred -hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC-CCCCCEEEEEECccch
Confidence 3799999998875432 322 2455566665432 1238999999999986
No 62
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.61 E-value=1.2e-14 Score=114.76 Aligned_cols=116 Identities=13% Similarity=0.178 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
+|+++|.+|+|||||++++++..+.. ...++...........++. .+.+|||||......... .++ .
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~--~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRD-------QWI--R 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHH-------HHH--H
Confidence 58999999999999999999766422 1222222222223334554 578999999754332211 122 4
Q ss_pred CCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCc-cccCcEEEEEeCCCCCC
Q 026593 117 TIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 117 ~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~ 166 (236)
++|++++|++++... +.. -..++..+...... ....|+++|+||+|+.+
T Consensus 70 ~ad~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 70 EGEGFILVYSITSRSTFER-VERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred hCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 799999998875422 222 24566666554331 23479999999999863
No 63
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=1.6e-14 Score=125.57 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=86.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~ 117 (236)
.|.|+|.|+||||||+|+|++.+. .+++.+.+|..+......+.+ ..++++||||+.............+.+++ ..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i--~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL--ER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH--Hh
Confidence 799999999999999999999885 677888888888877776664 46999999999765432211111122222 48
Q ss_pred CcEEEEEEeCCC---CCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 118 IDVLLYADRLDA---YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 118 ~~~il~v~~~d~---~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++++++|+++.. .........+++.+......-...|+++|+||+|+.
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 999999965541 112223345566666543222238999999999985
No 64
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.61 E-value=1.2e-14 Score=115.82 Aligned_cols=115 Identities=18% Similarity=0.284 Sum_probs=76.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcC-cccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-EALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
+.|+++|..|+|||||++++....+.. ...+ .+.........+++ ..+.+|||+|...+.... ..++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~-------~~y~- 70 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCE--ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT-------SAYY- 70 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHH-------HHHh-
Confidence 479999999999999999999766422 2221 12222233445555 577999999985432211 2222
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++... +... ..|+..+.+....+ .|+++|+||+|+.+
T Consensus 71 -~~ad~iIlVfDvtd~~Sf~~l-~~w~~~i~~~~~~~--~piilVgNK~DL~~ 119 (202)
T cd04120 71 -RSAKGIILVYDITKKETFDDL-PKWMKMIDKYASED--AELLLVGNKLDCET 119 (202)
T ss_pred -cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence 4899999998886533 4433 45666666554333 89999999999963
No 65
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.61 E-value=1.3e-14 Score=110.69 Aligned_cols=115 Identities=20% Similarity=0.273 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||+|++++..... ...++...........++. .+.+|||||........ ..++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~-------~~~~-- 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR-------DQYM-- 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC--CcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHH-------HHHH--
Confidence 689999999999999999999876422 2222222222333344554 47789999975432211 1222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..++++++|++++... +... ..+...+.+... ....|+++|+||+|+.
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~~-~~~~~~i~~~~~-~~~~piivv~nK~Dl~ 119 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFEDI-HTYREQIKRVKD-SDDVPMVLVGNKCDLA 119 (162)
T ss_pred hcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 3789999998876422 3222 234455554432 1237999999999986
No 66
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.61 E-value=1.3e-14 Score=111.14 Aligned_cols=116 Identities=14% Similarity=0.172 Sum_probs=72.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
+||+++|++|+|||||++++++....... .+..+..........++ ..+.+|||||..... ...+.++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~-- 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDS-QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR-------SVTRSYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCEEEEEEEEECcchHHHH-------HhHHHHh--
Confidence 58999999999999999999987642221 11111112222233334 468899999974321 1122222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +.. -..++..++..... ..|+++|+||+|+..
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~--~~~iivv~nK~D~~~ 119 (161)
T cd04113 71 RGAAGALLVYDITNRTSFEA-LPTWLSDARALASP--NIVVILVGNKSDLAD 119 (161)
T ss_pred cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCC--CCeEEEEEEchhcch
Confidence 4799999998876432 222 23455555544332 379999999999863
No 67
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.61 E-value=9.4e-15 Score=111.95 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=73.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC--CeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|++|+|||||+|++++.+..... .+............++ +..+.+|||||..... .....++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~- 71 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYR-------SLAPMYY- 71 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHh-
Confidence 379999999999999999999988753311 1111111112222333 3578899999963221 1111122
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++... +.. ...++..+..... ...|+++++||+|+.+
T Consensus 72 -~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 120 (163)
T cd01860 72 -RGAAAAIVVYDITSEESFEK-AKSWVKELQRNAS--PNIIIALVGNKADLES 120 (163)
T ss_pred -ccCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 4789999997775432 222 2456666665542 2378999999999863
No 68
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.60 E-value=1.9e-14 Score=122.63 Aligned_cols=125 Identities=16% Similarity=0.155 Sum_probs=84.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
..|+++|.+++|||||+|+|++... .+++++.+|..+......+.+ ..+.+|||||+.+...........+.+++ .
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--e 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--E 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--H
Confidence 5899999999999999999998764 456667777777777777766 88999999999654432211111122222 3
Q ss_pred CCcEEEEEEeCCCCCC--C-hHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 117 TIDVLLYADRLDAYRV--D-DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~--~-~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++++++|++++.... . .....+.+.+......-...|+++|+||+|+.
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 7899999977653211 1 12233445555443222348999999999985
No 69
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.60 E-value=5.5e-15 Score=116.60 Aligned_cols=113 Identities=19% Similarity=0.275 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
+|+++|.+|+|||||++++++...... ..++...........++ ..+.+|||||........... ..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~---------~~ 70 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV--YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLS---------YA 70 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc--cCCcceeeeEEEEEECCEEEEEEEEECCCChhcccccccc---------cc
Confidence 799999999999999999998764321 11111111222222333 478999999986554322111 14
Q ss_pred CCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 117 TIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 117 ~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++|++++|++++... +......|+..+..... ..|+++|+||+|+.
T Consensus 71 ~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~ 117 (189)
T cd04134 71 DTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLR 117 (189)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence 899999999887643 44444457777776543 38999999999996
No 70
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.60 E-value=2.5e-14 Score=111.20 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=74.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|.+|+|||||++++.+...... ..++...........++ ..+.+|||||..++..... .++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~-------~~~- 71 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDY--HDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRD-------QYM- 71 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC--cCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhH-------HHh-
Confidence 47999999999999999999997764221 11111122222334455 3688999999865432221 122
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +... ..+...+..... ....|+++|+||+|+.
T Consensus 72 -~~~d~~ilv~d~~~~~Sf~~~-~~~~~~i~~~~~-~~~~piilvgNK~Dl~ 120 (172)
T cd04141 72 -RCGEGFIICYSVTDRHSFQEA-SEFKKLITRVRL-TEDIPLVLVGNKVDLE 120 (172)
T ss_pred -hcCCEEEEEEECCchhHHHHH-HHHHHHHHHhcC-CCCCCEEEEEEChhhh
Confidence 4789999998886533 3332 345555555422 2238999999999985
No 71
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.60 E-value=1.4e-14 Score=112.97 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=77.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||+.++...... ....++...........++ ..+.+|||+|...+....... +
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~--~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~---~------ 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLS---Y------ 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhh---c------
Confidence 58999999999999999999977642 1122221122222333444 478999999987665443221 1
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++... |......|+..+.+..+ ..|+++|+||+|+.+
T Consensus 71 ~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~ 119 (176)
T cd04133 71 RGADVFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLRD 119 (176)
T ss_pred CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhcc
Confidence 4899999999986533 44433467777766543 389999999999963
No 72
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.60 E-value=6.1e-15 Score=114.53 Aligned_cols=115 Identities=19% Similarity=0.329 Sum_probs=73.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
..++|+++|++|+|||||++++.+.......+ +.........+++..+.+|||||..... .....++
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~-- 79 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISP----TLGFQIKTLEYEGYKLNIWDVGGQKTLR-------PYWRNYF-- 79 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCC----ccccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--
Confidence 56899999999999999999999875422211 1112223344567889999999984321 1122222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++.+... +... ..++..+.... .....|+++|+||+|+.
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 80 ESTDALIWVVDSSDRLRLDDC-KRELKELLQEE-RLAGATLLILANKQDLP 128 (173)
T ss_pred CCCCEEEEEEECCCHHHHHHH-HHHHHHHHhCh-hhcCCCEEEEEECcccc
Confidence 5899999997765421 3222 22333332211 11238999999999985
No 73
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.60 E-value=1.3e-14 Score=111.36 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++++....... .+.............++ ..+.+|||||........ ..++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~-- 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ-LSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH-------ASYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc-CCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh-------HHHh--
Confidence 58999999999999999999876642211 11111111122223333 467899999975432211 1222
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++..........++..+.+... ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~ 117 (161)
T cd04124 71 HKAHACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLD 117 (161)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCc
Confidence 489999999877542211222456666765432 28999999999984
No 74
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.60 E-value=1.6e-14 Score=111.26 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=71.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcc-cceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
++|+++|++|+|||||++++.+..... ..+++. ..........++ ..+.+|||||..... ...+.++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~- 72 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR-------AVTRSYY- 72 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHh-
Confidence 699999999999999999999876422 122111 111122233344 367999999974321 1122222
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
.++|++++|+++.... +.. -..++..+...... ..|+++|+||+|+...
T Consensus 73 -~~~~~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~--~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 73 -RGAAGALMVYDITRRSTYNH-LSSWLTDARNLTNP--NTVIFLIGNKADLEAQ 122 (166)
T ss_pred -cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 5899999998876422 222 23455544443322 3789999999999633
No 75
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.60 E-value=9.4e-15 Score=114.65 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=77.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||++++...... ....++...........++ ..+.+|||+|...+... +. .
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~--------~~-~ 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV--------RP-L 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhh--------hh-h
Confidence 4689999999999999999999977632 2222222122222333444 36899999998543221 11 1
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...++|++++|++++... +......|++.+.+..+ ..|+++|+||+|+.
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~ 122 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 122 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhh
Confidence 125899999999986532 43333567777877653 28999999999985
No 76
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.60 E-value=1.9e-14 Score=110.81 Aligned_cols=117 Identities=15% Similarity=0.238 Sum_probs=72.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|++|+|||||++++++..... ...+..+...........+ ..+.+|||||...... ....++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~-- 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-------ITSSYY-- 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH-------HHHHHh--
Confidence 699999999999999999999876422 1122222222223333444 3688999999643211 112222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++... +... ..++..+...... ..|+++|+||+|+...
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~l-~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASE--NVNKLLVGNKCDLTDK 122 (166)
T ss_pred CcCCEEEEEEECcCHHHHHhH-HHHHHHHHHhCCC--CCcEEEEEEChhcccc
Confidence 5899999998775422 2222 3455555544322 3799999999998633
No 77
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.60 E-value=2.5e-14 Score=109.90 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=75.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|++|+|||||++++++..... ...+.............++ ..+.+|||||....... ...+.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~-------~~~~~-- 70 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI-------TKQYY-- 70 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhh-------HHHHh--
Confidence 489999999999999999999876422 1122222222223344455 36789999997443221 11122
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++... +... ..++..+...... ..|+++|+||+|+...
T Consensus 71 ~~~~~~i~v~d~~~~~sf~~~-~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~ 120 (161)
T cd04117 71 RRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPE--GVQKILIGNKADEEQK 120 (161)
T ss_pred cCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 4899999999886533 4332 4566666554322 3899999999998643
No 78
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.60 E-value=2.3e-14 Score=113.95 Aligned_cols=117 Identities=14% Similarity=0.153 Sum_probs=73.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|++|+|||||++++++..... ...+..............+ ..+.+|||||........ ..++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~-------~~~~ 76 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTIT-------STYY 76 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHH-------HHHh
Confidence 35899999999999999999999876421 1112221122223333344 368899999974432111 1122
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.+++++++|+++.... +.. -..++..+....+ ..|+++|+||+|+.+
T Consensus 77 --~~a~~iilv~D~~~~~s~~~-~~~~~~~i~~~~~---~~piivVgNK~Dl~~ 124 (199)
T cd04110 77 --RGTHGVIVVYDVTNGESFVN-VKRWLQEIEQNCD---DVCKVLVGNKNDDPE 124 (199)
T ss_pred --CCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence 4789999998875422 322 2346666655443 279999999999864
No 79
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.60 E-value=2.1e-14 Score=115.61 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=75.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC---CeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
++|+++|.+|+|||||++++++..+.. ...+..+........... ...+.+|||||...+... ...++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~-~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l-------~~~~~- 71 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGK-SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM-------LDKYI- 71 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH-------HHHHh-
Confidence 589999999999999999999876421 111222222222233332 357899999996432211 11222
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCc-cccCcEEEEEeCCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~~ 167 (236)
.++|++++|++++... +.. -..|+..+.+.... ....|+++|+||+|+...
T Consensus 72 -~~ad~iilV~D~t~~~s~~~-~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~ 124 (215)
T cd04109 72 -YGAHAVFLVYDVTNSQSFEN-LEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN 124 (215)
T ss_pred -hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhccccCCCceEEEEEECcccccc
Confidence 4899999998876432 322 24577777776543 223579999999999633
No 80
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.59 E-value=7.6e-15 Score=116.04 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=74.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+.++....... ...++...........++ ..+.+|||||...+...... +
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~-------~- 71 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTL-------S- 71 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhh-------h-
Confidence 45899999999999999999999765321 111111111122223344 46889999998554322111 1
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..++|++++|++++... +......|+..+..... ..|+++|+||.|+.
T Consensus 72 -~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~ 120 (191)
T cd01875 72 -YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP---NVPILLVGTKKDLR 120 (191)
T ss_pred -ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEeChhhh
Confidence 15899999999986533 44433346665655432 38999999999985
No 81
>PLN03118 Rab family protein; Provisional
Probab=99.59 E-value=2.1e-14 Score=115.26 Aligned_cols=119 Identities=20% Similarity=0.202 Sum_probs=72.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||++++++....... +.............++ ..+.+|||||...+..... .++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-------~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLA--PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTS-------SYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcC--CCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHH-------HHH
Confidence 4589999999999999999999987642221 1111122223333444 4789999999855432221 122
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +......+...+.... .....|+++|+||+|+..
T Consensus 84 --~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 84 --RNAQGIILVYDVTRRETFTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRES 134 (211)
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccc
Confidence 4889999998875422 2222222333333222 222368999999999863
No 82
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.59 E-value=6.4e-15 Score=114.24 Aligned_cols=112 Identities=19% Similarity=0.190 Sum_probs=73.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHhcCC
Q 026593 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~ 117 (236)
|+++|++|+|||||++++++...... ..+............++. .+.+|||||..+....... ...+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---------~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPED--YVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPL---------SYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCC--CCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchh---------hcCC
Confidence 58999999999999999998764221 111111222223334444 5889999998654332211 1148
Q ss_pred CcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 118 IDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 118 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+|++++|++++... +......|+..+.+..+ ..|+++|+||+|+.
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 115 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLR 115 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhh
Confidence 99999998886432 43333456777766543 38999999999986
No 83
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.59 E-value=3.5e-14 Score=107.49 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=72.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee--CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|++|+|||||+|++++....... .+............. ....+.+||+||... .......++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~-- 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY-KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYY-- 70 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc-CCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHh--
Confidence 58999999999999999999988754331 111111122222222 346789999999732 112222233
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +.. ...++..+..... ...|+++++||+|+.
T Consensus 71 ~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 71 RGAHGAILVYDITNRESFEN-LDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 5799999997775422 222 2335555555442 238999999999985
No 84
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.59 E-value=1.8e-14 Score=110.32 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=73.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|++|+|||||++++++..... ...+..+...........+ ..+.+|||||.... ......++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~-- 70 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF-------RSITSSYY-- 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHHh--
Confidence 589999999999999999999887421 1122222222233344455 46889999996322 12222223
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|+++.... +... ..|+..+...... ..|+++|+||+|+..
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~-~~~l~~~~~~~~~--~~pivvv~nK~D~~~ 119 (164)
T smart00175 71 RGAVGALLVYDITNRESFENL-KNWLKELREYADP--NVVIMLVGNKSDLED 119 (164)
T ss_pred CCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCC--CCeEEEEEEchhccc
Confidence 5799999997775321 2221 2355555554322 389999999999863
No 85
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=3e-14 Score=113.42 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=73.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC---CeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
++|+++|.+|+|||||++++++...... ..+............++ ...+.+|||||........ +.++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~-~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~~- 71 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH-YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMT-------RVYY- 71 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhH-------HHHh-
Confidence 5899999999999999999998763221 11111111122223333 3478999999984432211 1222
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhC--ccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++... +... ..|+..+..... .....|+++|+||+|+.+
T Consensus 72 -~~a~~~ilv~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 72 -RGAVGAIIVFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred -CCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 5899999998875422 3332 345555554321 123479999999999963
No 86
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.59 E-value=2.1e-14 Score=113.34 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=77.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCc-CcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ-SEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
..++|+++|..|+|||||+.++.+.... .... ..+..........++ ..+.+|||||...+... ...+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l-------~~~~ 75 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTI-------FRSY 75 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH-------HHHH
Confidence 3489999999999999999999976532 1111 111122223344455 46889999998543211 1122
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
. .++|++++|++++... +... ..|++.+.+... ..|++||+||+|+..
T Consensus 76 ~--~~ad~illVfD~t~~~Sf~~~-~~w~~~i~~~~~---~~piilVGNK~DL~~ 124 (189)
T cd04121 76 S--RGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAP---GVPKILVGNRLHLAF 124 (189)
T ss_pred h--cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCC---CCCEEEEEECccchh
Confidence 2 5899999999986533 5444 567888876543 389999999999963
No 87
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.59 E-value=8.9e-15 Score=113.30 Aligned_cols=115 Identities=13% Similarity=0.160 Sum_probs=70.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
+.++|+++|.+|+|||||++++....... ..++.. .........+..+.+|||||..... .....++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~--~~~t~g--~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~-- 74 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT--TIPTVG--FNVETVTYKNVKFNVWDVGGQDKIR-------PLWRHYY-- 74 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc--ccCCcc--cceEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--
Confidence 56899999999999999999998655321 112211 2222334567889999999984321 1111222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|+++||+++.... +......+.+.+..... ...|+++|+||+|+.
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~ 123 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDEARQELHRIINDREM--RDALLLVFANKQDLP 123 (168)
T ss_pred ccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhh--cCCcEEEEEECcCCc
Confidence 4899999997765422 33222222222221111 127999999999985
No 88
>PRK11058 GTPase HflX; Provisional
Probab=99.59 E-value=5.2e-14 Score=123.67 Aligned_cols=122 Identities=17% Similarity=0.176 Sum_probs=78.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe-eEEEEeCCCCCCCCCChHHHHHHHHHHH-hc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFL-LN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~liDTPG~~d~~~~~~~~~~~i~~~l-~~ 115 (236)
.+|+++|.+|+|||||+|+|++.+.. +.+.+..|..+......+.+. .+.+|||||+.... .. .....+...+ ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p~-~lve~f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL-PH-DLVAAFKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC-CH-HHHHHHHHHHHHh
Confidence 58999999999999999999998864 455555565555555555553 88999999984321 11 2122222222 22
Q ss_pred CCCcEEEEEEeCCCCCCChHHHH-HHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQ-IIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~-~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++.+... +..+.. +...+.+.... ..|+++|+||+|+.
T Consensus 275 ~~ADlIL~VvDaS~~~-~~e~l~~v~~iL~el~~~--~~pvIiV~NKiDL~ 322 (426)
T PRK11058 275 RQATLLLHVVDAADVR-VQENIEAVNTVLEEIDAH--EIPTLLVMNKIDML 322 (426)
T ss_pred hcCCEEEEEEeCCCcc-HHHHHHHHHHHHHHhccC--CCCEEEEEEcccCC
Confidence 5899999997764322 222222 23333333222 38999999999986
No 89
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.59 E-value=3.2e-14 Score=109.91 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=75.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|.+|+|||||++++.+..... ...+...........+++ ..+.+|||||..++....+.. +
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------~- 70 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIE--SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELY-------I- 70 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHH-------H-
Confidence 3689999999999999999999776422 122222222223333444 477899999986654332221 1
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
.+++++++|++++... +.. ...+...+...... ...|+++++||.|+.+.
T Consensus 71 -~~~~~~vlv~~~~~~~s~~~-~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 71 -KSGQGFLLVYSVTSEASLNE-LGELREQVLRIKDS-DNVPMVLVGNKADLEDD 121 (168)
T ss_pred -hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHhhCC-CCCCEEEEEEChhcccc
Confidence 3789999998876432 322 23455555554332 23899999999998643
No 90
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=1.2e-14 Score=118.02 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=77.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
....++|+++|.+|+|||||++++.+..... ...++...........++ ..+.||||+|...+..... .
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~--~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~-------~ 80 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRP-------L 80 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCC--CcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHH-------H
Confidence 3456899999999999999999999775321 222221122222233344 4789999999754322111 1
Q ss_pred HHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+ ..++|++++|++++... |......|+..+.+..+ ..|+++|+||+|+.
T Consensus 81 ~--~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~ 130 (232)
T cd04174 81 C--YSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLR 130 (232)
T ss_pred H--cCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence 1 15899999999986432 33323567777776543 27999999999985
No 91
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.59 E-value=1.5e-14 Score=111.58 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=73.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee--CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++.+...... .+.. .........+ .+..+.+|||||..+... .. ..++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~----~~~~-- 68 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPEN--VPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRA---NL----AAEI-- 68 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc--CCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhH---HH----hhhc--
Confidence 4899999999999999999998764221 2221 1111222222 345788999999854321 11 1222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +......|+..+..... ..|+++|+||+|+.+
T Consensus 69 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~~ 117 (166)
T cd01893 69 RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRD 117 (166)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence 4899999998875422 33322456666665433 389999999999963
No 92
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.58 E-value=1.8e-14 Score=112.37 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=71.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee------------CCeeEEEEeCCCCCCCCCChHH
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK------------GGFTLNIIDTPGLVEAGYVNYQ 104 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~liDTPG~~d~~~~~~~ 104 (236)
.++|+++|++|+|||||++++.+..... ...+............+ ....+.+|||||....
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------ 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF------ 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH------
Confidence 4799999999999999999999876421 11111111111111211 2257899999996321
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 105 ALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 105 ~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
......++ .++|++++|++++... +... ..|+..+..... ....|+++|+||+|+.+
T Consensus 77 -~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 77 -RSLTTAFF--RDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAY-CENPDIVLCGNKADLED 134 (180)
T ss_pred -HHHHHHHh--CCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcC-CCCCcEEEEEeCccchh
Confidence 11112222 5899999998876422 2222 345555554322 12378999999999964
No 93
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.58 E-value=1.8e-14 Score=111.35 Aligned_cols=114 Identities=12% Similarity=0.127 Sum_probs=73.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee--CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|++|+|||||+++++...... ...+............. ....+.+|||||........... +
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~---~------ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGY---Y------ 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHH---h------
Confidence 589999999999999999998655311 11111111111122222 33578999999986654333221 1
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +.. -..++..+....+ ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 71 IGGQCAIIMFDVTSRVTYKN-VPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 4899999998875422 322 2356677766654 38999999999985
No 94
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.58 E-value=9.3e-14 Score=106.28 Aligned_cols=113 Identities=20% Similarity=0.230 Sum_probs=68.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccc--CcCcccceEEEEeeeC-CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNS--FQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
.|+++|.+|+|||||+|+|++........ .+..+.........+. +..+.+|||||+.++ ...+..++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~-------~~~~~~~~-- 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF-------IKNMLAGA-- 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH-------HHHHHhhh--
Confidence 68999999999999999999854211111 1122222222333444 678999999997322 22222222
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++.+.. ........+..+.. .+. .|+++|+||+|+.
T Consensus 73 ~~ad~ii~V~d~~~~-~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~ 117 (164)
T cd04171 73 GGIDLVLLVVAADEG-IMPQTREHLEILEL-LGI---KRGLVVLTKADLV 117 (164)
T ss_pred hcCCEEEEEEECCCC-ccHhHHHHHHHHHH-hCC---CcEEEEEECcccc
Confidence 489999999776532 22222333333322 221 5899999999985
No 95
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.58 E-value=3e-14 Score=109.61 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
+|+++|++|+|||||+++++.... .....+............++. .+.+|||||....... .....+ .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--~~~~~~------~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--QLERSI------R 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--hHHHHH------H
Confidence 589999999999999999987553 222222222222233334444 5789999998642111 122223 3
Q ss_pred CCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 117 TIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 117 ~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+|++++|++++... +... ..++..+..........|+++|+||+|+.
T Consensus 71 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred hCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 799999998875422 3222 44556666543212238999999999985
No 96
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.58 E-value=4.7e-14 Score=106.48 Aligned_cols=116 Identities=28% Similarity=0.419 Sum_probs=76.7
Q ss_pred EEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC-CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcE
Q 026593 42 VMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 120 (236)
Q Consensus 42 lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~ 120 (236)
++|++|+|||||+|++++..........+.+........... +..+.+|||||+.+...........+..++ ..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVL--ERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCE
Confidence 579999999999999999876545555555555555554444 678999999999887655543222333333 47999
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 121 LLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 121 il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+++|++.... .......+...... ...|+++|+||+|+.
T Consensus 79 il~v~~~~~~-~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~ 117 (163)
T cd00880 79 ILFVVDADLR-ADEEEEKLLELLRE-----RGKPVLLVLNKIDLL 117 (163)
T ss_pred EEEEEeCCCC-CCHHHHHHHHHHHh-----cCCeEEEEEEccccC
Confidence 9999665432 22222222222222 238999999999987
No 97
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.58 E-value=3.7e-14 Score=118.17 Aligned_cols=123 Identities=22% Similarity=0.398 Sum_probs=75.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccc-CcC------ccc--ceEEEEeeeCC--eeEEEEeCCCCCCCCCCh---
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNS-FQS------EAL--RPVMVSRSKGG--FTLNIIDTPGLVEAGYVN--- 102 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~-~~~------~~~--~~~~~~~~~~~--~~~~liDTPG~~d~~~~~--- 102 (236)
.++|+|+|.+|+|||||+|.|++........ .+. .+. .........++ .++.++||||+++.-...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 5899999999999999999999987544421 110 111 11122222233 378999999998753221
Q ss_pred HHHHHHHH----HHH-----------hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 103 YQALELIK----GFL-----------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 103 ~~~~~~i~----~~l-----------~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+...+. .++ .+..+|++||.++....++.+.|.+.++.|.+. .++|.|+.|+|..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~l 155 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEeccccc
Confidence 11222221 122 135699999997766666889999988888876 7899999999987
No 98
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=4.2e-14 Score=123.73 Aligned_cols=124 Identities=16% Similarity=0.177 Sum_probs=84.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC-CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~ 117 (236)
.|+++|.++||||||+|+|++.+. .+++++.+|..+......+. +..++++||||+.+...........+.+++ ..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--er 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--ER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH--hh
Confidence 899999999999999999999874 45667777777776666666 678999999999754332211111111112 47
Q ss_pred CcEEEEEEeCCCC---CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 118 IDVLLYADRLDAY---RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 118 ~~~il~v~~~d~~---~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++++++|++++.. ........+.+.|......-..+|.++|+||+|+.
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 8999999776432 11122345566666654322348999999999973
No 99
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.58 E-value=2e-14 Score=116.07 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=74.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++++..... .+.++...........++. .+.+|||+|...+.... . +..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~--------~-~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVR--------P-LAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHh--------H-Hhc
Confidence 689999999999999999999876422 2222222222223344443 67889999985432211 1 122
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++|+|++++... +......|...+....+ ..|+++|+||+|+.
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~---~~piiLVgnK~DL~ 118 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCP---NAKVVLVGCKLDMR 118 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEECcccc
Confidence 6899999998886532 44433445555554433 28999999999996
No 100
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.58 E-value=1.6e-14 Score=112.50 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=74.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||+.+++..... ....+............++ ..+.+|||||..+....... ++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~-- 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL-------SY-- 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhh-------hc--
Confidence 68999999999999999999976532 1121222122222233444 46889999998554322211 11
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +......|+..+....+ ..|+++|+||+|+.
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~ 118 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 118 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhc
Confidence 4899999998886432 43333456666665432 38999999999985
No 101
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.58 E-value=2.7e-14 Score=112.78 Aligned_cols=114 Identities=21% Similarity=0.235 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccce-EEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP-VMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
+||+++|.+|+|||||++++++.... .....++.... .......++. .+.+|||||......... .+.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~~- 71 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSR-------IYY- 71 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhH-------hhc-
Confidence 58999999999999999999987642 22222221111 1223344554 567999999854432211 111
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +.. ...|+..+..... ..|+++|+||+|+.
T Consensus 72 -~~~d~iilv~d~~~~~s~~~-~~~~~~~i~~~~~---~~piilv~nK~Dl~ 118 (193)
T cd04118 72 -RGAKAAIVCYDLTDSSSFER-AKFWVKELQNLEE---HCKIYLCGTKSDLI 118 (193)
T ss_pred -CCCCEEEEEEECCCHHHHHH-HHHHHHHHHhcCC---CCCEEEEEEccccc
Confidence 4899999998875421 211 2346666555322 37999999999985
No 102
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.58 E-value=4.5e-14 Score=109.07 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=70.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|++|+|||||++++++...... ..+............+.+. .+.+|||||....... ...++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~-- 70 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL-------GVAFY-- 70 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC-cCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH-------HHHHh--
Confidence 5899999999999999999998764221 1111111112222334443 5679999997433211 11222
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCc--cccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 166 (236)
.++|+++++++++....-.....+...+...... ....|+++|+||+|+.+
T Consensus 71 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 71 RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 5799999998775422111122344444433321 12389999999999974
No 103
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.58 E-value=4.4e-14 Score=107.77 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=72.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||+|++++....... .+..+...........+ ..+.+|||||....... ...++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~-- 70 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH-ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL-------GPIYY-- 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc-CCccceeEEEEEEEECCEEEEEEEEECCchHHHHHh-------hHHHh--
Confidence 58999999999999999999987653211 11111111222222233 36899999996432211 11112
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +.. -..+++.+...... ..|+++|+||+|+..
T Consensus 71 ~~~~~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 71 RDADGAILVYDITDADSFQK-VKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 4799999998875432 222 23455566655443 389999999999863
No 104
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.58 E-value=2.5e-14 Score=111.03 Aligned_cols=116 Identities=17% Similarity=0.203 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCc-ccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSE-ALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
+|+++|.+|+|||||++++++.... ....++ ...........++ ..+.+|||||........ ..++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~-- 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIA-------STYY-- 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhH-------HHHh--
Confidence 7999999999999999999987642 122111 1122222333344 478999999985432211 1112
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++...-......|+..+.+..... ..|+++|+||+|+.+
T Consensus 71 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~~ 120 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLSS 120 (170)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcCc
Confidence 58999999988754221122345666654432211 267999999999863
No 105
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.58 E-value=6.1e-15 Score=107.36 Aligned_cols=115 Identities=18% Similarity=0.188 Sum_probs=68.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc---cccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVT---VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
||+|+|++|+|||||+++|++..... .....+.+..............+.+||++|........... +
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---~------ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFF---L------ 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHH---H------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccch---h------
Confidence 79999999999999999999887541 11122222222222222333458999999985443332222 2
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
..+|++++|+++.... +... .+++.++..........|+++|+||.|
T Consensus 72 ~~~d~~ilv~D~s~~~s~~~~-~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPESLEYL-SQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHHHHHHH-HHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChHHHHHH-HHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 3799999998876422 2221 234445555443333499999999998
No 106
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.57 E-value=3.5e-14 Score=110.67 Aligned_cols=116 Identities=12% Similarity=0.147 Sum_probs=71.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
++.++|+++|.+|+|||||++++...... ...+ |.........+.+..+.+|||||...... ....++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~- 78 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV--TTIP--TIGFNVETVTYKNISFTVWDVGGQDKIRP-------LWRHYY- 78 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccccceEEEEECCEEEEEEECCCChhhHH-------HHHHHh-
Confidence 35799999999999999999999644421 1112 11222223445678899999999843211 112222
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|+++||+++.... +... ..++..+..... ....|+++|+||+|+.
T Consensus 79 -~~ad~ii~v~D~t~~~s~~~~-~~~l~~~~~~~~-~~~~piilv~NK~Dl~ 127 (175)
T smart00177 79 -TNTQGLIFVVDSNDRDRIDEA-REELHRMLNEDE-LRDAVILVFANKQDLP 127 (175)
T ss_pred -CCCCEEEEEEECCCHHHHHHH-HHHHHHHhhCHh-hcCCcEEEEEeCcCcc
Confidence 5899999997765322 3332 223333322110 1137999999999985
No 107
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=2.2e-14 Score=112.94 Aligned_cols=115 Identities=16% Similarity=0.207 Sum_probs=72.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++++...... ..+..+..........++ ..+.+|||||...... ....++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-------~~~~~~-- 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSES-TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS-------LNNSYY-- 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh-------hHHHHc--
Confidence 5899999999999999999998775321 111111112222333444 3678999999643221 111122
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +... ..|+..+....+.. .|+++|+||+|+.
T Consensus 71 ~~~d~iilv~d~~~~~s~~~i-~~~~~~i~~~~~~~--~~~ivv~nK~Dl~ 118 (188)
T cd04125 71 RGAHGYLLVYDVTDQESFENL-KFWINEINRYAREN--VIKVIVANKSDLV 118 (188)
T ss_pred cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCC--CeEEEEEECCCCc
Confidence 5899999998875422 2222 33555565544332 7899999999986
No 108
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.57 E-value=5.3e-14 Score=131.41 Aligned_cols=120 Identities=16% Similarity=0.219 Sum_probs=90.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCC-ChHHHHHHHHHHHhcC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFLLNK 116 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~-~~~~~~~~i~~~l~~~ 116 (236)
.+|+++|.+++|||||+|+|++.....++..++.|.........+++..+.+|||||+..... ....+......++ .
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~ 353 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV--S 353 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH--H
Confidence 689999999999999999999988767777777777776667778889999999999864321 1222222222233 5
Q ss_pred CCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+|++++|++... .++..+..+...+... ..|+++|+||+|+.
T Consensus 354 ~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~ 396 (712)
T PRK09518 354 LADAVVFVVDGQV-GLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ 396 (712)
T ss_pred hCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 8999999966542 3667777777777642 38999999999985
No 109
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=1.4e-14 Score=113.81 Aligned_cols=114 Identities=19% Similarity=0.236 Sum_probs=70.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC---CeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
++|+++|.+|+|||||++++++..... ...++............ ...+.+|||||..+... ++.. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~-~ 69 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPE--EYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR--------LRPL-S 69 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC--CCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH--------HHHH-h
Confidence 489999999999999999999876421 11111111111122222 23689999999743321 1111 1
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..++|++++|++++... +......|+..+..... ..|+++|+||+|+.
T Consensus 70 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 118 (187)
T cd04132 70 YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCP---GTPIMLVGLKTDLR 118 (187)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhh
Confidence 15899999998876422 33332345555544322 37999999999985
No 110
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.57 E-value=6.1e-14 Score=113.10 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=73.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~ 117 (236)
++|+++|.+|+|||||++++++..+... .+ +.........+....+.+|||||...+...... +. .+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~--~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~-------~~--~~ 67 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT--VS--TVGGAFYLKQWGPYNISIWDTAGREQFHGLGSM-------YC--RG 67 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC--CC--ccceEEEEEEeeEEEEEEEeCCCcccchhhHHH-------Hh--cc
Confidence 5899999999999999999998775321 11 222222223345567999999998654332211 11 48
Q ss_pred CcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 118 IDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 118 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
+|++++|++++... +.... .++..+.+.... ..|+++|+||+|+.+
T Consensus 68 ad~~IlV~Dvt~~~Sf~~l~-~~~~~l~~~~~~--~~piIlVgNK~DL~~ 114 (220)
T cd04126 68 AAAVILTYDVSNVQSLEELE-DRFLGLTDTANE--DCLFAVVGNKLDLTE 114 (220)
T ss_pred CCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 99999998886432 43332 333444443322 378999999999863
No 111
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.57 E-value=3e-14 Score=109.01 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|++|+|||||++++++...... ..+..+.........+.+ ..+.+|||||........ ..++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~-- 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPD-LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT-------SSYY-- 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-cCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh-------HHHh--
Confidence 5899999999999999999998764221 111111111112222333 578999999974332211 1222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +.. ...++..+..... ....|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 71 RGAQGVILVYDVTRRDTFTN-LETWLNELETYST-NNDIVKMLVGNKIDKE 119 (161)
T ss_pred CCCCEEEEEEECCCHHHHHh-HHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence 4899999998875422 322 2335565655543 2348899999999986
No 112
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.57 E-value=2.6e-14 Score=110.97 Aligned_cols=114 Identities=22% Similarity=0.219 Sum_probs=74.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++++++|++|+|||||++++.+.... ....++...........++ ..+.+|||||.......... + .
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~--~ 69 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPL-------C--Y 69 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccccc-------c--c
Confidence 58999999999999999999876532 2222222222222334444 46789999998554332211 1 1
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|+++.... +......|+..+..... ..|+++|+||+|+.
T Consensus 70 ~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 117 (173)
T cd04130 70 PDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLR 117 (173)
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhc
Confidence 4899999998875432 44433456666665332 28999999999985
No 113
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.57 E-value=1.6e-14 Score=123.41 Aligned_cols=119 Identities=21% Similarity=0.235 Sum_probs=73.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccc----CcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHH
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS----FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALEL 108 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~ 108 (236)
....+++|+|+|.+|+|||||||+|.|-....... ...+|..+..+.. ..-.++++||.||.+......+++++.
T Consensus 31 ~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~ 109 (376)
T PF05049_consen 31 IDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKE 109 (376)
T ss_dssp HHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHH
T ss_pred hhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHH
Confidence 33378999999999999999999998743211111 1223444444443 222369999999998887777777765
Q ss_pred HHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCC
Q 026593 109 IKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (236)
Q Consensus 109 i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 164 (236)
+. -...|.||++ . ..+|+..+..+.+.+.+.- +++++|.||+|.
T Consensus 110 ~~----~~~yD~fiii--~-s~rf~~ndv~La~~i~~~g-----K~fyfVRTKvD~ 153 (376)
T PF05049_consen 110 VK----FYRYDFFIII--S-SERFTENDVQLAKEIQRMG-----KKFYFVRTKVDS 153 (376)
T ss_dssp TT----GGG-SEEEEE--E-SSS--HHHHHHHHHHHHTT------EEEEEE--HHH
T ss_pred cc----ccccCEEEEE--e-CCCCchhhHHHHHHHHHcC-----CcEEEEEecccc
Confidence 52 1468988887 3 3379999999998888874 899999999985
No 114
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.56 E-value=2e-14 Score=111.49 Aligned_cols=114 Identities=21% Similarity=0.215 Sum_probs=74.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++++...... ..+............++. .+.+|||||..+....... ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---------~~ 69 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE--YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL---------SY 69 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccc---------cC
Confidence 5899999999999999999998764221 111111122223334444 4679999998765432221 11
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|+++.... +......++..+... . ...|+++|+||+|+.
T Consensus 70 ~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~--~~~piivv~nK~Dl~ 117 (174)
T cd04135 70 PMTDVFLICFSVVNPASFQNVKEEWVPELKEY-A--PNVPYLLVGTQIDLR 117 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C--CCCCEEEEeEchhhh
Confidence 4789999998875432 443334566666654 2 238999999999985
No 115
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.56 E-value=5.4e-14 Score=108.90 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=73.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|++|+|||||++++++...... ..+............+.+ ..+.+|||||..+... .....++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~- 73 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPER-TEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK------SMVQHYY- 73 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCc-cccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH------hhHHHhh-
Confidence 36999999999999999999987653211 111111112222333444 4789999999743211 0111222
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +.. ...|+..+...... ...|+++|+||+|+..
T Consensus 74 -~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 74 -RNVHAVVFVYDVTNMASFHS-LPSWIEECEQHSLP-NEVPRILVGNKCDLRE 123 (170)
T ss_pred -cCCCEEEEEEECCCHHHHHh-HHHHHHHHHHhcCC-CCCCEEEEEECccchh
Confidence 5899999998886433 322 24566666554322 2389999999999863
No 116
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.56 E-value=3.2e-14 Score=114.86 Aligned_cols=117 Identities=11% Similarity=0.060 Sum_probs=75.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee--CCeeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
...++|+++|.+|+|||||+++++....... ..+............. ....+.+|||||...+...... +
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~ 82 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG-------Y 82 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCc-cCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHH-------H
Confidence 4679999999999999999999876653211 1111111112222222 3358899999998655322211 1
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
. .++|++|+|++++... +. .-..|+..+.+... ..|+++|+||+|+.
T Consensus 83 ~--~~~~~~ilvfD~~~~~s~~-~i~~w~~~i~~~~~---~~piilvgNK~Dl~ 130 (219)
T PLN03071 83 Y--IHGQCAIIMFDVTARLTYK-NVPTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (219)
T ss_pred c--ccccEEEEEEeCCCHHHHH-HHHHHHHHHHHhCC---CCcEEEEEEchhhh
Confidence 1 4889999998886532 32 22457777766543 38999999999985
No 117
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.56 E-value=6.8e-14 Score=108.32 Aligned_cols=112 Identities=8% Similarity=0.086 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
||+++|.+|+|||||++++.+... ....+ |.........+.+..+.+|||||........ ...+ .++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~~~--T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~---~~~~------~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQPIP--TIGFNVETVEYKNLKFTIWDVGGKHKLRPLW---KHYY------LNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCcCC--cCceeEEEEEECCEEEEEEECCCChhcchHH---HHHh------ccC
Confidence 589999999999999999998743 12111 2222223455677899999999985442211 1122 489
Q ss_pred cEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 119 DVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 119 ~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
|+++||++.+... +... ..++..+...... ...|+++|+||+|+.
T Consensus 68 d~ii~V~D~s~~~s~~~~-~~~~~~~~~~~~~-~~~piilv~NK~Dl~ 113 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEA-HSELAKLLTEKEL-RDALLLIFANKQDVA 113 (169)
T ss_pred CEEEEEEeCCcHHHHHHH-HHHHHHHhcChhh-CCCCEEEEEeCcCcc
Confidence 9999997765422 3332 2333333322111 127999999999985
No 118
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.56 E-value=4.8e-14 Score=110.64 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=72.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
.++.++|+++|++|+|||||++++........ .+ |...........+..+.+|||||...... ....+.
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~--~~--T~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~ 82 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVTT--IP--TIGFNVETVEYKNLKFTMWDVGGQDKLRP-------LWRHYY 82 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC--ccccceEEEEECCEEEEEEECCCCHhHHH-------HHHHHh
Confidence 34679999999999999999999975543211 11 11222233445778899999999843211 111222
Q ss_pred hcCCCcEEEEEEeCCCC-CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|+++||++++.. ++......+...+.... ....|+++|+||.|+.
T Consensus 83 --~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~--~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 83 --QNTNGLIFVVDSNDRERIGDAREELERMLSEDE--LRDAVLLVFANKQDLP 131 (182)
T ss_pred --cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHh--hcCCCEEEEEeCCCCC
Confidence 589999999777532 23333222322222211 1237999999999984
No 119
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.56 E-value=7.4e-14 Score=114.65 Aligned_cols=117 Identities=19% Similarity=0.203 Sum_probs=74.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++++..... ...++...........++ ..+.||||+|..++.. ++.. ..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~--------~~~~-~~ 69 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA--------MRRL-SI 69 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH--------HHHH-Hh
Confidence 489999999999999999998776422 222222222333344455 4678999999854321 1111 11
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhC-------ccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFG-------KQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~-------~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... |.. ...+++.+.+... .....|+++|+||+|+..
T Consensus 70 ~~ad~iIlVfdv~~~~Sf~~-i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 70 LTGDVFILVFSLDNRESFEE-VCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred ccCCEEEEEEeCCCHHHHHH-HHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 4789999998887532 322 2455566654311 123489999999999963
No 120
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.56 E-value=2.8e-13 Score=106.41 Aligned_cols=115 Identities=14% Similarity=0.190 Sum_probs=73.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
+..+|+++|.+|+|||||++++.+....... .+..+.......++..+.+|||||.... ......++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~-- 82 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ----PTQHPTSEELAIGNIKFTTFDLGGHQQA-------RRLWKDYF-- 82 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--
Confidence 5689999999999999999999987643221 1222333445567789999999998432 11222233
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|+++||++..... +... ...+..+.+... ....|+++|+||+|+.
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~-~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 131 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAES-KRELDALLSDEE-LATVPFLILGNKIDAP 131 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHH-HHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence 5899999997664321 2222 222333322111 1237999999999984
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.55 E-value=3.9e-14 Score=109.03 Aligned_cols=116 Identities=12% Similarity=0.115 Sum_probs=68.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc---cCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVN---SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
+|+++|++|+|||||++++++....... .....+.........+.+..+.+|||||+.+... ....++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~-- 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRS-------LWDKYY-- 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHH-------HHHHHh--
Confidence 5899999999999999999875321100 0111122222334556788999999999854321 112222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++..... +.. ...++..+.+... ....|+++++||+|+.
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~-~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEE-SKSALEKVLRNEA-LEGVPLLILANKQDLP 120 (167)
T ss_pred CCCCEEEEEEECchHHHHHH-HHHHHHHHHhChh-hcCCCEEEEEEccccc
Confidence 5899999996654321 111 1223333322211 1238999999999985
No 122
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.3e-14 Score=111.23 Aligned_cols=132 Identities=12% Similarity=0.092 Sum_probs=89.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
.+.++++++|..++||||||+++.-..+..... +.....-...++.+.++ .+.+|||.|++.++..-..+
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~Yq-ATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY------- 91 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY------- 91 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhccccc-ceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhh-------
Confidence 355899999999999999999999766422211 11122223334445554 68899999996654433322
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHHHh
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCS 177 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~ 177 (236)
+ .++.++++|+++....--....+|++.+....|.+. ..+++|+||.||.+++..+.++-..
T Consensus 92 ~--Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eEg~~ 153 (221)
T KOG0094|consen 92 I--RDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEEGER 153 (221)
T ss_pred c--cCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHHHHH
Confidence 2 489999999998543322334678888888777642 6789999999999776666555443
No 123
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.55 E-value=5.1e-14 Score=108.05 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=70.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcc-cceEEEEee---eCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRS---KGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
++|+++|.+|+|||||++++.+..........++. ......... .....+.+|||||.... ....+.++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~ 73 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY-------SDMVSNYW 73 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH-------HHHHHHHh
Confidence 58999999999999999999864211222222111 111111222 23358999999996322 12222233
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++++... +. .-..|+..+.... ...|+++|+||+|+.
T Consensus 74 --~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 74 --ESPSVFILVYDVSNKASFE-NCSRWVNKVRTAS---KHMPGVLVGNKMDLA 120 (164)
T ss_pred --CCCCEEEEEEECcCHHHHH-HHHHHHHHHHHhC---CCCCEEEEEECcccc
Confidence 5899999998875422 22 1245555555543 238999999999986
No 124
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.5e-14 Score=109.55 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=87.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+|+|.+|+|||||+-++...++... ..+.....-........+ .++.+|||.|+..+......++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~-~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYy------- 75 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHEN-IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYY------- 75 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccc-cccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccccee-------
Confidence 468999999999999999999887764321 111111111222333333 5788999999988766555443
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHH
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVY 175 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~ 175 (236)
+++++.|+|++++... |.. -+.|++.|....+.+ ..+.+|+||+|+...+...+++.
T Consensus 76 --RgA~AAivvYDit~~~SF~~-aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~ea 133 (200)
T KOG0092|consen 76 --RGANAAIVVYDITDEESFEK-AKNWVKELQRQASPN--IVIALVGNKADLLERREVEFEEA 133 (200)
T ss_pred --cCCcEEEEEEecccHHHHHH-HHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHHHH
Confidence 3999999999997544 443 377888888877633 56778999999986555555544
No 125
>PLN03110 Rab GTPase; Provisional
Probab=99.55 E-value=7.6e-14 Score=112.46 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=75.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|++|+|||||++++++...... ..+.............++ ..+.+|||||.... ......++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~-~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~ 82 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE-SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY-------RAITSAYY 82 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh
Confidence 347999999999999999999998764221 112121122223334444 47899999997432 11222222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.+++++++|+++........-..|+..+...... ..|+++|+||+|+..
T Consensus 83 --~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 83 --RGAVGALLVYDITKRQTFDNVQRWLRELRDHADS--NIVIMMAGNKSDLNH 131 (216)
T ss_pred --CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC--CCeEEEEEEChhccc
Confidence 4899999998875432212234566666665433 389999999999853
No 126
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.55 E-value=1e-13 Score=106.07 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=70.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||+++++..... ....+............++ ..+.+|||||..+.... ...++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~-- 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAI-------RDNYH-- 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHH-------HHHHh--
Confidence 58999999999999999999976632 2222222222222223343 46899999997543221 11122
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+++++|++++... +... ..+...+..... ....|+++|+||+|+.
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piiiv~NK~D~~ 118 (164)
T cd04139 70 RSGEGFLLVFSITDMESFTAT-AEFREQILRVKD-DDNVPLLLVGNKCDLE 118 (164)
T ss_pred hcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcC-CCCCCEEEEEEccccc
Confidence 4789999997775422 2222 334444444321 2338999999999986
No 127
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.55 E-value=5.7e-14 Score=108.55 Aligned_cols=119 Identities=21% Similarity=0.205 Sum_probs=74.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||++++++...... ..+..+..........++. .+.+|||||...... ....++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~~~~~~ 75 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS-------LRTPFY 75 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH-------hHHHHh
Confidence 458999999999999999999997664221 1122111222223334443 678999999743221 111122
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCc--cccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +.. -..+...+...... ....|+++|+||+|+.
T Consensus 76 --~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 76 --RGSDCCLLTFAVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred --cCCCEEEEEEECCCHHHHHh-HHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 5889999998887533 333 23455555554321 1237999999999985
No 128
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.55 E-value=5.1e-14 Score=107.68 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
+|+++|.+|+|||||++++++.........+... .........+..+.+|||||...... ....++ .++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g--~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~--~~~ 69 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG--FNVESFEKGNLSFTAFDMSGQGKYRG-------LWEHYY--KNI 69 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc--cceEEEEECCEEEEEEECCCCHhhHH-------HHHHHH--ccC
Confidence 5899999999999999999986421111111111 11222345677899999999854321 112222 589
Q ss_pred cEEEEEEeCCCCC-CChHHHHHHHHHHHhhC-ccccCcEEEEEeCCCCC
Q 026593 119 DVLLYADRLDAYR-VDDLDRQIIKAVTGTFG-KQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 119 ~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~-~~~~~~~ivv~tk~D~~ 165 (236)
|+++||++..... +.. ...++..+..... .....|+++|+||+|+.
T Consensus 70 d~ii~v~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 70 QGIIFVIDSSDRLRLVV-VKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred CEEEEEEeCCcHHHHHH-HHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 9999997764321 211 1233444433211 12348999999999985
No 129
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.55 E-value=4.9e-14 Score=108.44 Aligned_cols=111 Identities=15% Similarity=0.065 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee---CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
.|+++|.+|+|||||+|+|++...... ..+..+.......... .+..+.+|||||..... .....+.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~~~~~~-- 71 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT-------NMRARGA-- 71 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc-cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH-------HHHHHHH--
Confidence 589999999999999999998764332 1222222222233333 36789999999974321 1111122
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++.+.. ........+..+.. ...|+++|+||+|+.
T Consensus 72 ~~~d~il~v~d~~~~-~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 72 SLTDIAILVVAADDG-VMPQTIEAIKLAKA-----ANVPFIVALNKIDKP 115 (168)
T ss_pred hhcCEEEEEEECCCC-ccHHHHHHHHHHHH-----cCCCEEEEEEceecc
Confidence 479999999776532 23333444444433 227999999999985
No 130
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.54 E-value=7.4e-14 Score=109.46 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=71.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
++.++|+++|.+|+|||||++++....... ..++. ..........+..+.+|||||.... ......+.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~--g~~~~~~~~~~~~~~i~D~~Gq~~~-------~~~~~~~~- 82 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTI--GFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYF- 82 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCc--ceeEEEEEECCEEEEEEECCCCHHH-------HHHHHHHh-
Confidence 467899999999999999999998654322 11221 1222334567788999999997322 11112222
Q ss_pred cCCCcEEEEEEeCCCC-CCChHHHHHHHHHHHhhCc--cccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~ 165 (236)
.++|+++||++.... ++.. ....+...... -...|+++|+||.|+.
T Consensus 83 -~~a~~iI~V~D~s~~~s~~~----~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 83 -QNTQGLIFVVDSNDRDRVVE----ARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred -ccCCEEEEEEeCCcHHHHHH----HHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 589999999776432 1322 22233322211 1237999999999985
No 131
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.54 E-value=1.1e-13 Score=110.12 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=73.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee-------CCeeEEEEeCCCCCCCCCChHHHHHHHH
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-------GGFTLNIIDTPGLVEAGYVNYQALELIK 110 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~liDTPG~~d~~~~~~~~~~~i~ 110 (236)
++|+++|.+|+|||||++++.+...... ..+............+ ....+.+|||+|........ .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~-~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~-------~ 72 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGR-PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTR-------A 72 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC-CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHH-------H
Confidence 5899999999999999999998764221 1111111111112222 12468999999985432111 1
Q ss_pred HHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhC-----------------ccccCcEEEEEeCCCCCC
Q 026593 111 GFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFG-----------------KQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 111 ~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~-----------------~~~~~~~ivv~tk~D~~~ 166 (236)
.+. .++|++++|++++... +.. -..|+..+..... .....|+++|+||+|+.+
T Consensus 73 ~~y--r~ad~iIlVyDvtn~~Sf~~-l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 73 VFY--NQVNGIILVHDLTNRKSSQN-LQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHh--CcCCEEEEEEECcChHHHHH-HHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 112 5899999999986533 333 2467777765321 112379999999999963
No 132
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.54 E-value=5.3e-13 Score=105.47 Aligned_cols=121 Identities=21% Similarity=0.233 Sum_probs=75.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-ccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh---HHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKG 111 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~---~~~~~~i~~ 111 (236)
...+|+++|.+|+|||||+|++++.. ....+..++.+....... . +..+.+|||||+....... .+....+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 55899999999999999999999875 333343333332222222 2 4679999999986533221 222223333
Q ss_pred HHhc-CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLN-KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~-~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++.. ...++++++++.+. .++..+.++.+.+... ..|+++++||+|+.
T Consensus 100 ~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLKEY-----GIPVLIVLTKADKL 148 (196)
T ss_pred HHHhCccceEEEEEEecCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 3322 35678888855432 3555555555555322 27899999999986
No 133
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.54 E-value=4.5e-14 Score=108.32 Aligned_cols=113 Identities=11% Similarity=0.152 Sum_probs=69.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~ 117 (236)
+||+++|.+|+|||||++++...... ...+... ............+.+|||||+.... .....+. .+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g--~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~--~~ 67 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYF--QN 67 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCC--cceEEEEECCEEEEEEECCCCHhHH-------HHHHHHh--cC
Confidence 48999999999999999999755432 1122211 1122344567889999999984321 1112222 58
Q ss_pred CcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 118 IDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 118 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+|+++||++.+... +......+...+..... ...|+++|+||+|+.
T Consensus 68 ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~ 114 (159)
T cd04150 68 TQGLIFVVDSNDRERIGEAREELQRMLNEDEL--RDAVLLVFANKQDLP 114 (159)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHh--cCCCEEEEEECCCCC
Confidence 99999997775321 33332222222222111 127999999999985
No 134
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.54 E-value=1.3e-13 Score=128.94 Aligned_cols=122 Identities=16% Similarity=0.259 Sum_probs=87.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH--HH-HHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QA-LELIKGF 112 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~--~~-~~~i~~~ 112 (236)
+..+|+++|.+|+|||||+|+++|.+. .+++.++.|.........+++..+.+|||||+++...... .. .+..+.+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 457999999999999999999999875 5677788887777777778888999999999987643111 00 1112334
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
+....+|++++| +|..+... ...+..++.+. ..|+++++||+|+.+
T Consensus 81 l~~~~aD~vI~V--vDat~ler-~l~l~~ql~e~-----giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 81 ILSGDADLLINV--VDASNLER-NLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (772)
T ss_pred HhccCCCEEEEE--ecCCcchh-hHHHHHHHHHc-----CCCEEEEEEchhhhh
Confidence 445689999999 55444433 23444455443 289999999999863
No 135
>PRK04213 GTP-binding protein; Provisional
Probab=99.54 E-value=2e-13 Score=108.55 Aligned_cols=120 Identities=16% Similarity=0.213 Sum_probs=72.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH----HHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY----QALELIKG 111 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~----~~~~~i~~ 111 (236)
..++|+++|.+|+|||||+|+|++... .++..++.+..... ..+. .+.+|||||++....... .+...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 468999999999999999999998763 34444444433322 2222 689999999865443322 22222222
Q ss_pred HHh--cCCCcEEEEEEeCCCC-CC---------ChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLL--NKTIDVLLYADRLDAY-RV---------DDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~--~~~~~~il~v~~~d~~-~~---------~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++. ...++++++|.+.+.. ++ ...+..++..+... ..|+++|+||+|+.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-----GIPPIVAVNKMDKI 143 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-----CCCeEEEEECcccc
Confidence 332 2467888888554321 01 11223334443321 28999999999985
No 136
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.54 E-value=9e-14 Score=105.84 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=72.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
+|+++|++|+|||||++++++... .....+.+...........+ ..+.+||+||..+.. .....++ .
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~--~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS-------AMRDLYI--R 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHH--h
Confidence 589999999999999999998762 22233333333333444443 468899999975421 1111222 4
Q ss_pred CCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..|++++|++++....-..-..+...+...... ...|+++|+||+|+.+
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 789999998775422111123444445444331 2389999999999863
No 137
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.53 E-value=6e-14 Score=108.88 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=72.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
.+|+++|++|+|||||++++++..... ...++..........+++. .+.+|||||..+....... ..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---------~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL---------SY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhcccc---------cc
Confidence 489999999999999999999876421 1111111111223334443 6789999998654322211 11
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 118 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR 118 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcc
Confidence 4789999998887532 33333345555555432 38999999999985
No 138
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.2e-13 Score=107.58 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=88.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
-++|+++|.+|+|||+++-++....... +........-...+...++. .+.+|||.|+..+...... +.
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~-~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~s-------Yy- 82 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNT-SFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTA-------YY- 82 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcC-CccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHH-------HH-
Confidence 4899999999999999999999776422 21222222333444455554 6889999999655433222 22
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchH
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYD 173 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~ 173 (236)
.+++++++|+++....-.+....|++.+.+....+ .+.++|+||+|+.+++..+.+
T Consensus 83 -rgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~R~V~~e 138 (207)
T KOG0078|consen 83 -RGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEKRQVSKE 138 (207)
T ss_pred -hhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeeccccccccccccHH
Confidence 48999999999976553344566999999987654 899999999999754444444
No 139
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.3e-13 Score=123.77 Aligned_cols=126 Identities=19% Similarity=0.285 Sum_probs=99.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCC--CChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~--~~~~~~~~~i~~~l 113 (236)
+..+++++|.|++||||+.|+|+|.+. .+++++++|.+.+.....+.+..+.++|.||.++-. ..++++ .++++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~V---ar~~l 77 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKV---ARDFL 77 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHH---HHHHH
Confidence 456799999999999999999999985 788999999999999999999999999999998765 333333 45677
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchH
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYD 173 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~ 173 (236)
.+..+|+++-| +|+..+..+ .++.-++.+.- .|+++++|.+|.+.+++..++
T Consensus 78 l~~~~D~ivnV--vDAtnLeRn-LyltlQLlE~g-----~p~ilaLNm~D~A~~~Gi~ID 129 (653)
T COG0370 78 LEGKPDLIVNV--VDATNLERN-LYLTLQLLELG-----IPMILALNMIDEAKKRGIRID 129 (653)
T ss_pred hcCCCCEEEEE--cccchHHHH-HHHHHHHHHcC-----CCeEEEeccHhhHHhcCCccc
Confidence 77899999999 776555443 33334444432 889999999999865555433
No 140
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=4.2e-13 Score=103.98 Aligned_cols=117 Identities=17% Similarity=0.093 Sum_probs=72.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcc-cceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEA-LRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
++-++|+++|.+|+|||||++++++.... +....++. .........+++ ..+.+|||+|........... +
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~---~-- 75 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAE---L-- 75 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhh---h--
Confidence 35689999999999999999999987743 12222222 122223334445 468899999986654333222 1
Q ss_pred HHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++.+.. .....+..++.. .......|+++|+||+|+.
T Consensus 76 ----~~~d~~llv~d~~~~---~s~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 76 ----AACDVACLVYDSSDP---KSFSYCAEVYKK-YFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred ----hcCCEEEEEEeCCCH---HHHHHHHHHHHH-hccCCCCeEEEEEEccccc
Confidence 489999999776431 111112222222 2111248999999999985
No 141
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=1.9e-13 Score=121.19 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=83.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~ 117 (236)
..|+|+|.++||||||+|+|++.+. .+++++.+|..+......+.+..++++||||+.+........-..+.+++ ..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi--er 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI--ER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH--Hh
Confidence 6899999999999999999999875 45677778877877777788889999999999654322211111111122 47
Q ss_pred CcEEEEEEeCCCC---CCChHHH-HHHHHHHHhhC---------ccccCcEEEEEeCCCCC
Q 026593 118 IDVLLYADRLDAY---RVDDLDR-QIIKAVTGTFG---------KQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 118 ~~~il~v~~~d~~---~~~~~~~-~~l~~l~~~~~---------~~~~~~~ivv~tk~D~~ 165 (236)
++++++|+++... +-...+. .+...|..+.. .-..+|+++|+||+|+.
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 8999999665321 1111122 23334444332 11248999999999985
No 142
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.53 E-value=1.1e-13 Score=108.34 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccc---------------CcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY 103 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~ 103 (236)
+|+++|.+|+|||||+|+|++........ ..+.+.........+.+..+.+|||||+.+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 48999999999999999999876432210 01122222333445567889999999985321
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 104 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 104 ~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.....++ ..+|++++|++... ........++..+.. ...|+++|+||+|+.
T Consensus 77 ---~~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~ 127 (189)
T cd00881 77 ---SEVIRGL--SVSDGAILVVDANE-GVQPQTREHLRIARE-----GGLPIIVAINKIDRV 127 (189)
T ss_pred ---HHHHHHH--HhcCEEEEEEECCC-CCcHHHHHHHHHHHH-----CCCCeEEEEECCCCc
Confidence 1122222 48999999966543 234444555555544 238999999999996
No 143
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.53 E-value=1.2e-13 Score=110.88 Aligned_cols=118 Identities=15% Similarity=0.192 Sum_probs=73.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee-CC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
.++|+++|.+|+|||||++++++........ +..+.......... .+ ..+.+|||||....... ...++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~ 73 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSI-------TRSYY 73 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHH-------HHHHh
Confidence 4799999999999999999999876433221 11111222222222 22 47889999997432211 11222
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++... +... ..++..+.+.... ...|+++|+||+|+.+
T Consensus 74 --~~~d~iilv~D~~~~~Sf~~l-~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 74 --RNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQP-HRPVFILVGHKCDLES 123 (211)
T ss_pred --cCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence 5789999998876432 3322 3466666555432 2267899999999864
No 144
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.53 E-value=8.6e-14 Score=109.23 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=71.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEee---eCCeeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS---KGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
..++|+++|.+|+|||||++++++.... ...+..+......... ..+..+.+|||||...... ....+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~ 72 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP-------LWKSY 72 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHH-------HHHHH
Confidence 4689999999999999999999877642 2222222222222222 2456899999999743211 11112
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+ .++|++++|++..... +... ..++..+...... ...|+++|+||+|+.
T Consensus 73 ~--~~~d~ii~v~D~~~~~~~~~~-~~~~~~i~~~~~~-~~~p~iiv~NK~D~~ 122 (183)
T cd04152 73 T--RCTDGIVFVVDSVDVERMEEA-KTELHKITRFSEN-QGVPVLVLANKQDLP 122 (183)
T ss_pred h--ccCCEEEEEEECCCHHHHHHH-HHHHHHHHhhhhc-CCCcEEEEEECcCcc
Confidence 2 4899999997764321 2211 2233444433222 238999999999985
No 145
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.53 E-value=9e-14 Score=108.18 Aligned_cols=115 Identities=9% Similarity=0.072 Sum_probs=72.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
+.++|+++|.+|+|||||++++++...... .+ +.........+.+..+.+|||||..... .....++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~-- 80 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT--SP--TIGSNVEEIVYKNIRFLMWDIGGQESLR-------SSWNTYY-- 80 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCc--CC--ccccceEEEEECCeEEEEEECCCCHHHH-------HHHHHHh--
Confidence 468999999999999999999987664322 11 2222233455677899999999984321 1111222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++.+... +... ...+..+....+ ....|+++++||+|+.
T Consensus 81 ~~~d~vi~V~D~s~~~~~~~~-~~~l~~~~~~~~-~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 81 TNTDAVILVIDSTDRERLPLT-KEELYKMLAHED-LRKAVLLVLANKQDLK 129 (174)
T ss_pred hcCCEEEEEEECCCHHHHHHH-HHHHHHHHhchh-hcCCCEEEEEECCCCC
Confidence 4899999997764321 2222 222333322211 1238999999999985
No 146
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.53 E-value=2.3e-13 Score=102.63 Aligned_cols=117 Identities=17% Similarity=0.247 Sum_probs=73.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|.+|+|||||+|++++.. ......+..+.........+++ ..+.+|||||..+........ .
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~---~----- 71 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLY---Y----- 71 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHH---H-----
Confidence 3699999999999999999999887 3444444444444444455666 678999999965443222111 1
Q ss_pred cCCCcEEEEEEeCCCC--CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAY--RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..++.+++++++... .+......+...+...... ..|+++++||+|+.
T Consensus 72 -~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 72 -RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLR 121 (161)
T ss_pred -hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCC
Confidence 245666666444221 1222223444455544332 38999999999996
No 147
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.53 E-value=2.1e-13 Score=110.31 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=72.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee--CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++++.........+............+ ....+.+|||||... . ++.. ..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-------~---~~~~-~~ 69 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM-------W---TEDS-CM 69 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch-------H---HHhH-Hh
Confidence 589999999999999999998665421111111111222222333 345789999999851 1 1111 11
Q ss_pred C-CCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 116 K-TIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 116 ~-~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
. ++|++++|++++... +.. -..++..+..... ....|+++|+||+|+.+.
T Consensus 70 ~~~ad~iilV~d~td~~S~~~-~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 70 QYQGDAFVVVYSVTDRSSFER-ASELRIQLRRNRQ-LEDRPIILVGNKSDLARS 121 (221)
T ss_pred hcCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC-CCCCCEEEEEEChhcccc
Confidence 3 899999998886432 322 2445565655421 123899999999998643
No 148
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.53 E-value=5.6e-13 Score=103.21 Aligned_cols=115 Identities=15% Similarity=0.239 Sum_probs=72.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
..++|+++|++|+|||||++.+.+.......+ +.........+.+..+.+|||||.... ......++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~----t~g~~~~~i~~~~~~~~~~D~~G~~~~-------~~~~~~~~-- 79 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITP----TQGFNIKTVQSDGFKLNVWDIGGQRAI-------RPYWRNYF-- 79 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCC----CCCcceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--
Confidence 57999999999999999999999876422211 111222344556889999999997321 12222222
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|+++.... +... ..++..+.+... ....|+++++||+|+.
T Consensus 80 ~~~~~ii~v~D~~~~~~~~~~-~~~~~~~~~~~~-~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 80 ENTDCLIYVIDSADKKRLEEA-GAELVELLEEEK-LAGVPVLVFANKQDLA 128 (173)
T ss_pred cCCCEEEEEEeCCCHHHHHHH-HHHHHHHHhChh-hcCCCEEEEEECCCCc
Confidence 5889999997764321 2222 222222222211 1238999999999985
No 149
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.53 E-value=1.6e-13 Score=105.83 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=73.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|++|+|||||++++++...... ..+..+.........+.+ ..+.+|||||...... ....++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~ 77 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS-------ITQSYY 77 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHHHh
Confidence 448999999999999999999986653221 111111122333344555 4578999999743221 112223
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|+++.... +. .-..++..+......+ .|+++|+||+|+.+
T Consensus 78 --~~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~ 126 (169)
T cd04114 78 --RSANALILTYDITCEESFR-CLPEWLREIEQYANNK--VITILVGNKIDLAE 126 (169)
T ss_pred --cCCCEEEEEEECcCHHHHH-HHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence 5899999997764321 21 1134555555544322 78999999999863
No 150
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.53 E-value=1.5e-13 Score=104.83 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=70.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
+|+++|.+|+|||||++++++...... .+ +.........+.+..+.+|||||...... ....++ ..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~--~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT--IP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP-------LWKHYY--ENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC--CC--CcCcceEEEEECCEEEEEEECCCChhhHH-------HHHHHh--ccC
Confidence 589999999999999999998873211 11 11222233455678899999999854321 111222 478
Q ss_pred cEEEEEEeCCCC-CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 119 DVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 119 ~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
|++++|+++... ++... ..++..+..... ....|+++|+||+|+.
T Consensus 68 ~~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~-~~~~piiiv~nK~D~~ 113 (158)
T cd00878 68 NGIIFVVDSSDRERIEEA-KEELHKLLNEEE-LKGVPLLIFANKQDLP 113 (158)
T ss_pred CEEEEEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCcEEEEeeccCCc
Confidence 999999776542 13222 223333333221 2248999999999986
No 151
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.9e-13 Score=117.03 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=94.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
....++|+++|+|++|||||+|+|+..+...+++.+++|........+.+|..+.++||.|+-+.....-+.+...+...
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 34669999999999999999999999999999999999999988888999999999999999772222222222222222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHH---HHHHHHHhhC----ccccCcEEEEEeCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQ---IIKAVTGTFG----KQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~---~l~~l~~~~~----~~~~~~~ivv~tk~D~~~~ 167 (236)
....+|+|++|++.... .+..+.. .+......+. +.-..+++++.||.|+..+
T Consensus 345 ~~~~advi~~vvda~~~-~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 345 RIERADVILLVVDAEES-DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHhhcCEEEEEeccccc-ccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 33589999999555322 2233333 3333333221 1122789999999998744
No 152
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.52 E-value=5.4e-14 Score=107.48 Aligned_cols=112 Identities=12% Similarity=0.151 Sum_probs=68.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
+|+++|++|+|||||++++....... ..++. ........+.+..+.+|||||..+.. ...+.++ .++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~t~--~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~--~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIPTI--GFNVETVTYKNLKFQVWDLGGQTSIR-------PYWRCYY--SNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCCcc--CcCeEEEEECCEEEEEEECCCCHHHH-------HHHHHHh--cCC
Confidence 58999999999999999997765422 12211 12222344567889999999985331 1112223 489
Q ss_pred cEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 119 DVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 119 ~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
|++++|++.+... +......+...+... . ....|+++|+||+|+.
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEE-E-LKGAVLLVFANKQDMP 113 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhch-h-hcCCcEEEEEeCCCCC
Confidence 9999997765321 222222222222221 1 1238999999999985
No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.52 E-value=1.3e-13 Score=109.24 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=70.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccC---------------cCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSF---------------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 102 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~ 102 (236)
.+|+++|.+|+|||||++++++......... .+.+.........+.+..+.+|||||+.++.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG--- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence 3899999999999999999996321111110 1122222333455677899999999985432
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 103 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 103 ~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.....++ .++|++++|++.... .......++..+.. . ..|+++|+||+|+.
T Consensus 80 ----~~~~~~~--~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~ 130 (194)
T cd01891 80 ----GEVERVL--SMVDGVLLLVDASEG-PMPQTRFVLKKALE---L--GLKPIVVINKIDRP 130 (194)
T ss_pred ----HHHHHHH--HhcCEEEEEEECCCC-ccHHHHHHHHHHHH---c--CCCEEEEEECCCCC
Confidence 1222222 489999999776532 22333333433332 1 27899999999985
No 154
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.52 E-value=1.8e-13 Score=106.81 Aligned_cols=115 Identities=21% Similarity=0.227 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
.+|+++|.+|+|||||++++++.... ....++............+ ..+.+|||||+.+...... .++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~~~-- 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQ-------KYS-- 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHH-------HHH--
Confidence 58999999999999999999977642 2122222222223333444 3578999999854322111 111
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...++++++++++... +.. -..+...+.+..+. ...|+++|+||+|+.
T Consensus 71 ~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEV-VKVIYDKILDMLGK-ESVPIVLVGNKSDLH 119 (180)
T ss_pred hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCCEEEEEEchhhh
Confidence 4789999998775422 222 23344444443322 237999999999985
No 155
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.51 E-value=2.2e-13 Score=105.35 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=70.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
+|+++|.+|+|||||++++.+... ....+ +...........+..+.+|||||.... ......++ .++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~~~~--t~g~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~--~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--KKVAP--TVGFTPTKLRLDKYEVCIFDLGGGANF-------RGIWVNYY--AEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--ccccC--cccceEEEEEECCEEEEEEECCCcHHH-------HHHHHHHH--cCC
Confidence 489999999999999999997621 11111 111223345567889999999997322 11222233 589
Q ss_pred cEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 119 DVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 119 ~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
|+++||++..... +... ..++..+..... ....|+++|+||+|+.
T Consensus 68 ~~ii~V~D~s~~~s~~~~-~~~l~~l~~~~~-~~~~piliv~NK~Dl~ 113 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEV-KEILRELLQHPR-VSGKPILVLANKQDKK 113 (167)
T ss_pred CEEEEEEECCchhHHHHH-HHHHHHHHcCcc-ccCCcEEEEEeCCCCc
Confidence 9999997764322 2221 334444443221 1238999999999985
No 156
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.51 E-value=9.8e-14 Score=106.04 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=67.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee-CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~ 117 (236)
+|+++|.+|+|||||++++.+...... .+.... ....... .+..+.+|||||..... .....++ .+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~~t~~~--~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~--~~ 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--IPTVGF--NVEMLQLEKHLSLTVWDVGGQEKMR-------TVWKCYL--EN 67 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--cCccCc--ceEEEEeCCceEEEEEECCCCHhHH-------HHHHHHh--cc
Confidence 589999999999999999998875322 221111 1112222 34689999999984321 1111222 47
Q ss_pred CcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 118 IDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 118 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+|++++|++..... +.... .++..+.+... ....|+++|+||+|+.
T Consensus 68 ~~~iv~v~D~~~~~~~~~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~ 114 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQ-KELKHILKNEH-IKGVPVVLLANKQDLP 114 (160)
T ss_pred CCEEEEEEECCcHHHHHHHH-HHHHHHHhchh-hcCCCEEEEEECcccc
Confidence 89999997764321 22222 22333222111 1238999999999985
No 157
>PLN03108 Rab family protein; Provisional
Probab=99.51 E-value=3.3e-13 Score=108.29 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=72.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|++|+|||||++++++....... .+..............+ ..+.+|||||...... ....++
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~-~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~-------~~~~~~- 76 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-------ITRSYY- 76 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHh-
Confidence 489999999999999999999987643221 11111111122233344 3578999999743211 111122
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|+++.... +. ....++..+...... ..|+++|+||+|+...
T Consensus 77 -~~ad~~vlv~D~~~~~s~~-~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 77 -RGAAGALLVYDITRRETFN-HLASWLEDARQHANA--NMTIMLIGNKCDLAHR 126 (210)
T ss_pred -ccCCEEEEEEECCcHHHHH-HHHHHHHHHHHhcCC--CCcEEEEEECccCccc
Confidence 4799999998875432 22 223455555544332 3899999999998643
No 158
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.51 E-value=3.2e-14 Score=122.97 Aligned_cols=161 Identities=22% Similarity=0.282 Sum_probs=111.4
Q ss_pred CCccccccccccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEe
Q 026593 1 MGSLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR 80 (236)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (236)
|++++.+++-.+..|... ++-+..++......-+++++|-+++|||||+|.++-.++ .+.+++.+|..-...+.
T Consensus 137 m~tv~k~q~~sl~yLeqV-----rqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~ 210 (620)
T KOG1490|consen 137 MATIIKRQKSSLEYLEQV-----RQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHL 210 (620)
T ss_pred HHHHHHHhcchHHHHHHH-----HHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhh
Confidence 455566666444332222 222455555566778999999999999999999998775 67778888877777777
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHH-HHHhcCCCcEEEEEEeCCCCC-CCh-HHHHHHHHHHHhhCccccCcEEE
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIK-GFLLNKTIDVLLYADRLDAYR-VDD-LDRQIIKAVTGTFGKQIWRKSLL 157 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~-~~l~~~~~~~il~v~~~d~~~-~~~-~~~~~l~~l~~~~~~~~~~~~iv 157 (236)
.+.=..+.++||||+.|.-..+...++... .++ ..-..++||+++++... .+- ++..+++.|+..|.. .|+|+
T Consensus 211 dykYlrwQViDTPGILD~plEdrN~IEmqsITAL-AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~Il 286 (620)
T KOG1490|consen 211 DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL-AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTIL 286 (620)
T ss_pred hhheeeeeecCCccccCcchhhhhHHHHHHHHHH-HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEE
Confidence 777778999999999876544333322211 111 12347889998876543 443 346789999999976 89999
Q ss_pred EEeCCCCCCCCCCc
Q 026593 158 VLTHAQLCPPDGLN 171 (236)
Q Consensus 158 v~tk~D~~~~~~~~ 171 (236)
|+||+|...+.+.+
T Consensus 287 vlNK~D~m~~edL~ 300 (620)
T KOG1490|consen 287 VLNKIDAMRPEDLD 300 (620)
T ss_pred EeecccccCccccC
Confidence 99999997554433
No 159
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.51 E-value=2.4e-13 Score=104.86 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=69.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
.|+++|.+|+|||||++++.+.... ....+... .........+..+.+|||||......... ..+ .++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~-~~~~pt~g--~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~---~~~------~~a 68 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL-ESVVPTTG--FNSVAIPTQDAIMELLEIGGSQNLRKYWK---RYL------SGS 68 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc-ccccccCC--cceEEEeeCCeEEEEEECCCCcchhHHHH---HHH------hhC
Confidence 3799999999999999999987532 11112111 11233445677899999999865432221 122 489
Q ss_pred cEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 119 DVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 119 ~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
|+++||++..... +.. ...++..+... ....|+++|+||+|+.
T Consensus 69 d~ii~V~D~t~~~s~~~-~~~~l~~~~~~---~~~~piilv~NK~Dl~ 112 (164)
T cd04162 69 QGLIFVVDSADSERLPL-ARQELHQLLQH---PPDLPLVVLANKQDLP 112 (164)
T ss_pred CEEEEEEECCCHHHHHH-HHHHHHHHHhC---CCCCcEEEEEeCcCCc
Confidence 9999997764321 221 12333333322 2348999999999985
No 160
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.51 E-value=2e-13 Score=108.48 Aligned_cols=115 Identities=16% Similarity=0.216 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
+|+++|.+|+|||||++++++..... ...............+.+ ..+.+|||||...+..... .++ .
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~~--~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP--KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRK-------LSI--Q 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHH-------HHh--h
Confidence 58999999999999999999876422 222222222233344555 4788999999754422111 111 4
Q ss_pred CCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 117 TIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 117 ~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
++|++++|+++.... +.. ...++..+.+.... ...|+++|+||+|+..
T Consensus 70 ~ad~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 118 (198)
T cd04147 70 NSDAFALVYAVDDPESFEE-VERLREEILEVKED-KFVPIVVVGNKADSLE 118 (198)
T ss_pred cCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence 899999998765322 222 23445555554332 2389999999999863
No 161
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.50 E-value=4.5e-13 Score=105.49 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=73.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
....+|+++|++|+|||||++++.+...... .+ +..+......+++..+.+|||||.... ......++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~--~~--T~~~~~~~i~~~~~~~~l~D~~G~~~~-------~~~~~~~~- 84 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQH--VP--TLHPTSEELTIGNIKFKTFDLGGHEQA-------RRLWKDYF- 84 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCccc--CC--ccCcceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh-
Confidence 4678999999999999999999998764221 11 222333455667889999999997432 11122223
Q ss_pred cCCCcEEEEEEeCCCC-CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++.... ++... ..++..+.... .....|+++++||+|+.
T Consensus 85 -~~ad~iilV~D~~~~~s~~~~-~~~~~~i~~~~-~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 85 -PEVDGIVFLVDAADPERFQES-KEELDSLLSDE-ELANVPFLILGNKIDLP 133 (190)
T ss_pred -ccCCEEEEEEECCcHHHHHHH-HHHHHHHHcCc-cccCCCEEEEEeCCCCC
Confidence 588999999776432 12222 22333332211 12338999999999985
No 162
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=4.6e-14 Score=109.58 Aligned_cols=125 Identities=13% Similarity=0.097 Sum_probs=87.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
-++|+++|.+|+|||-|+.+++...+...+. ..............+++ +..||||.|+..++.....+.
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~Sk-sTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYY-------- 84 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESK-STIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYY-------- 84 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccc-cceeEEEEeeceeecCcEEEEeeecccchhhhccccchhh--------
Confidence 3899999999999999999999776433222 12222233334445554 678999999976654443332
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchH
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYD 173 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~ 173 (236)
.++.+.++|+++......+.-.+|++.|+.....+ .++|+|+||+||.+.+..+.+
T Consensus 85 -rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~lraV~te 140 (222)
T KOG0087|consen 85 -RGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHLRAVPTE 140 (222)
T ss_pred -cccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhccccchh
Confidence 48999999999975332335577888888877554 899999999999854443333
No 163
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.50 E-value=1.5e-12 Score=103.26 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=94.7
Q ss_pred cccccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCc----CcccceE----EEE
Q 026593 8 EWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ----SEALRPV----MVS 79 (236)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~----~~~~~~~----~~~ 79 (236)
++.|+..+.++.+. +.-..+ =.++|+++|.+|.||||++|.++...+...+..+ +..+... ...
T Consensus 25 gyvGidtI~~Qm~~-------k~mk~G-F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thv 96 (336)
T KOG1547|consen 25 GYVGIDTIIEQMRK-------KTMKTG-FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHV 96 (336)
T ss_pred ccccHHHHHHHHHH-------HHHhcc-CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeee
Confidence 56677776666554 222333 4699999999999999999999976543321111 1111111 111
Q ss_pred eeeCCe--eEEEEeCCCCCCCCC---ChHHHHH--------HHHHHH--------hcCCCcEEEEEEeCCCCCCChHHHH
Q 026593 80 RSKGGF--TLNIIDTPGLVEAGY---VNYQALE--------LIKGFL--------LNKTIDVLLYADRLDAYRVDDLDRQ 138 (236)
Q Consensus 80 ~~~~~~--~~~liDTPG~~d~~~---~~~~~~~--------~i~~~l--------~~~~~~~il~v~~~d~~~~~~~~~~ 138 (236)
...++. +++++||||++|.-- ..+-+.+ .+++-+ .+..+|+++|..+..+.++...|.+
T Consensus 97 ieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDie 176 (336)
T KOG1547|consen 97 IEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIE 176 (336)
T ss_pred eeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHH
Confidence 222332 789999999998531 1122222 222221 2356899999987777779999999
Q ss_pred HHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 139 IIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 139 ~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+++.|.+. .+++.|+-|+|-.
T Consensus 177 flkrLt~v------vNvvPVIakaDtl 197 (336)
T KOG1547|consen 177 FLKRLTEV------VNVVPVIAKADTL 197 (336)
T ss_pred HHHHHhhh------heeeeeEeecccc
Confidence 99999987 7899999999975
No 164
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.50 E-value=2.6e-13 Score=108.67 Aligned_cols=113 Identities=17% Similarity=0.130 Sum_probs=70.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccc------------------------------CcCcccceEEEEeeeCCeeEE
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKGGFTLN 88 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 88 (236)
+|+++|++|+|||||+++|++......+. ..+.+.........+.+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999998654322210 012233333445567788999
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 89 IIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 89 liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+|||||+.++ ...+...+ ..+|++++|++... .....+......+. ..+. +++++|+||+|+.
T Consensus 81 liDTpG~~~~-------~~~~~~~~--~~ad~~llVvD~~~-~~~~~~~~~~~~~~-~~~~---~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQY-------TRNMVTGA--STADLAILLVDARK-GVLEQTRRHSYILS-LLGI---RHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHHH-------HHHHHHhh--hhCCEEEEEEECCC-CccHhHHHHHHHHH-HcCC---CcEEEEEEchhcc
Confidence 9999997432 12222222 48999999966543 23333343333332 2222 5688899999985
No 165
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.49 E-value=1e-12 Score=107.07 Aligned_cols=86 Identities=19% Similarity=0.275 Sum_probs=61.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
+++++|.+|+|||||+|+|+|... .+..++..+..+......+.+..+.+|||||+.+...........+..+ ...+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~--~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAV--ARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHh--hccC
Confidence 789999999999999999999874 3455566666666666678899999999999865432211111111112 2589
Q ss_pred cEEEEEEeC
Q 026593 119 DVLLYADRL 127 (236)
Q Consensus 119 ~~il~v~~~ 127 (236)
|++++|++.
T Consensus 79 d~il~V~D~ 87 (233)
T cd01896 79 DLILMVLDA 87 (233)
T ss_pred CEEEEEecC
Confidence 999999654
No 166
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.49 E-value=3.2e-13 Score=105.99 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=71.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||++++++..... ...+.............++ ..+.+|||+|......... .+ .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~-------~~--~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLP-------LV--C 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhH-------HH--C
Confidence 589999999999999999998776421 1112221122222334455 4689999999854322111 11 2
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +.. -..|+..+.+..+. ..| ++|+||+|+.
T Consensus 71 ~~a~~iilv~D~t~~~s~~~-i~~~~~~~~~~~~~--~~p-ilVgnK~Dl~ 117 (182)
T cd04128 71 NDAVAILFMFDLTRKSTLNS-IKEWYRQARGFNKT--AIP-ILVGTKYDLF 117 (182)
T ss_pred cCCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCCC--CCE-EEEEEchhcc
Confidence 5899999998875432 322 24566666654332 245 6889999985
No 167
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.48 E-value=7.6e-14 Score=103.79 Aligned_cols=128 Identities=16% Similarity=0.085 Sum_probs=86.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|.+|+|||||+-++....+-...+. .............+|. ++.+|||.|+..++.....+++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~-tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyR------- 82 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPT-TIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYR------- 82 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCc-eeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhc-------
Confidence 48999999999999999999887664222221 1122333444455554 7899999999888877765543
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHHH
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYC 176 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~ 176 (236)
++.++|+|+++.+.. |... ..|++.+.-+.-. ...-.|+|+||+|....+..+.++-+
T Consensus 83 --gaqGiIlVYDVT~Rdtf~kL-d~W~~Eld~Ystn-~diikmlVgNKiDkes~R~V~reEG~ 141 (209)
T KOG0080|consen 83 --GAQGIILVYDVTSRDTFVKL-DIWLKELDLYSTN-PDIIKMLVGNKIDKESERVVDREEGL 141 (209)
T ss_pred --cCceeEEEEEccchhhHHhH-HHHHHHHHhhcCC-ccHhHhhhcccccchhcccccHHHHH
Confidence 999999999986532 4443 4567777666532 23556899999997544444444433
No 168
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.48 E-value=1.5e-12 Score=102.68 Aligned_cols=115 Identities=16% Similarity=0.235 Sum_probs=79.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccc------------c-----cCcCcccceEEEEee--eCCeeEEEEeCCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTV------------N-----SFQSEALRPVMVSRS--KGGFTLNIIDTPGLV 96 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~------------~-----~~~~~~~~~~~~~~~--~~~~~~~liDTPG~~ 96 (236)
+-.+|+++|+.++|||||+++|++...... . .....+......... ..+..+.++||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 457999999999999999999995432110 0 011233344445555 788999999999973
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 97 d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+ ....+...+ ..+|++++|++... .+.....+.+..+.... .|+++|+||+|+.
T Consensus 82 ~-------f~~~~~~~~--~~~D~ailvVda~~-g~~~~~~~~l~~~~~~~-----~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 D-------FIKEMIRGL--RQADIAILVVDAND-GIQPQTEEHLKILRELG-----IPIIVVLNKMDLI 135 (188)
T ss_dssp H-------HHHHHHHHH--TTSSEEEEEEETTT-BSTHHHHHHHHHHHHTT------SEEEEEETCTSS
T ss_pred c-------eeeccccee--cccccceeeeeccc-ccccccccccccccccc-----cceEEeeeeccch
Confidence 2 333333333 58999999966543 36666777777776653 7899999999985
No 169
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.48 E-value=6.2e-13 Score=106.13 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEee--eCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS--KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
+|+++|++|+|||||++.|.+.....+ .++........... ..+..+.+|||||..... .... .++ .
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~---~~~~----~~~--~ 70 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLR---DKLL----ETL--K 70 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHHH---HHHH----HHH--h
Confidence 689999999999999999998764222 11111111111111 235689999999985431 1222 222 2
Q ss_pred CC-cEEEEEEeCCCC--CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 117 TI-DVLLYADRLDAY--RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 117 ~~-~~il~v~~~d~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.. ++++||++.... .+...-..+...+..........|++++.||+|+..
T Consensus 71 ~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 71 NSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 55 999999665432 111111112122221111112389999999999863
No 170
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.48 E-value=1.5e-12 Score=103.21 Aligned_cols=115 Identities=10% Similarity=0.090 Sum_probs=74.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCc---------ccccc------CcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERV---------VTVNS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 101 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~---------~~~~~------~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~ 101 (236)
.++|.++|+.++|||||+++|++... ....+ ..+.+.........+++..+.++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD---- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH----
Confidence 47899999999999999999985410 00000 112222333344456778899999999842
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 102 ~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
....+...+ ..+|++++|.+... ..+..+...+..+.+. +. +++++++||+|+.
T Consensus 78 ---~~~~~~~~~--~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~ 131 (195)
T cd01884 78 ---YIKNMITGA--AQMDGAILVVSATD-GPMPQTREHLLLARQV-GV---PYIVVFLNKADMV 131 (195)
T ss_pred ---HHHHHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCC
Confidence 223333333 48999999965542 2566666666665543 21 3488999999985
No 171
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.48 E-value=1.7e-12 Score=109.11 Aligned_cols=204 Identities=21% Similarity=0.317 Sum_probs=120.7
Q ss_pred ccccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccc---cCcCc----ccceE--EEE
Q 026593 9 WAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVN---SFQSE----ALRPV--MVS 79 (236)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~---~~~~~----~~~~~--~~~ 79 (236)
+.|+..++.+... ..... .-+++|+++|++|.|||||+|.|++....... +..+. +.... ...
T Consensus 3 ~vgi~~l~~~r~~-------~~~k~-Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (373)
T COG5019 3 YVGISNLPNQRHR-------KLSKK-GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAE 74 (373)
T ss_pred cCCcCcchHHHHH-------HHHhc-CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeee
Confidence 4567766666543 22233 37899999999999999999999988432221 11111 11111 112
Q ss_pred eeeCC--eeEEEEeCCCCCCCCC---ChHHHHHHHH----HHH------------hcCCCcEEEEEEeCCCCCCChHHHH
Q 026593 80 RSKGG--FTLNIIDTPGLVEAGY---VNYQALELIK----GFL------------LNKTIDVLLYADRLDAYRVDDLDRQ 138 (236)
Q Consensus 80 ~~~~~--~~~~liDTPG~~d~~~---~~~~~~~~i~----~~l------------~~~~~~~il~v~~~d~~~~~~~~~~ 138 (236)
..-++ .+++++||||++|.-. ..+-+...+. .++ .+..+|++||.....+..+.+.|.+
T Consensus 75 l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe 154 (373)
T COG5019 75 LEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE 154 (373)
T ss_pred eecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH
Confidence 22233 3789999999998632 1222222222 222 2457999999976667679999999
Q ss_pred HHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHHHhhchHHHHHHHHhh-ccCCCC-Cccc-------------cch
Q 026593 139 IIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLG-AGLGKH-EFED-------------YAV 203 (236)
Q Consensus 139 ~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~-~~~~-------------~~i 203 (236)
+++.|.+. .++|.|+.|+|... .++...- .+.+.+.++.. ..+... +.++ ..+
T Consensus 155 ~Mk~ls~~------vNlIPVI~KaD~lT-----~~El~~~-K~~I~~~i~~~nI~vf~pyd~e~~~~e~~e~~~~l~~~~ 222 (373)
T COG5019 155 AMKRLSKR------VNLIPVIAKADTLT-----DDELAEF-KERIREDLEQYNIPVFDPYDPEDDEDESLEENQDLRSLI 222 (373)
T ss_pred HHHHHhcc------cCeeeeeeccccCC-----HHHHHHH-HHHHHHHHHHhCCceeCCCCccccchhhHHHHHHHhhcC
Confidence 99999887 79999999999872 2222211 33444444443 333221 1110 123
Q ss_pred hHHH------HhcCCCCCCCCCCceecccccCCcc
Q 026593 204 PVAL------VENSGRCSKNENDEKVQFLCSHSVH 232 (236)
Q Consensus 204 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (236)
|..+ .++++.+.-++.|.|...++++.=|
T Consensus 223 PFAII~S~~~~~~~~~~vrgR~YpWG~v~Idd~~h 257 (373)
T COG5019 223 PFAIIGSNTEIENGGEQVRGRKYPWGVVEIDDEEH 257 (373)
T ss_pred CeEEEeccceeccCCceeeeeccCCcceecCCCcc
Confidence 3332 2333455667788887777776543
No 172
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.48 E-value=1.8e-13 Score=104.72 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
||+++|+.|+|||||++++.+..... ...+.............++. .+.+||++|...... ... .+. .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----~~~---~~~--~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE-NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDS----LRD---IFY--R 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS-SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH----HHH---HHH--T
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccccccccc----ccc---ccc--c
Confidence 69999999999999999999776321 11122212333334444444 689999999743311 111 111 5
Q ss_pred CCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 117 TIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 117 ~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
++|++++|++++... +... ..|+..+....+. ..|+++|+||.|+.+
T Consensus 71 ~~~~~ii~fd~~~~~S~~~~-~~~~~~i~~~~~~--~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 71 NSDAIIIVFDVTDEESFENL-KKWLEEIQKYKPE--DIPIIVVGNKSDLSD 118 (162)
T ss_dssp TESEEEEEEETTBHHHHHTH-HHHHHHHHHHSTT--TSEEEEEEETTTGGG
T ss_pred cccccccccccccccccccc-ccccccccccccc--cccceeeeccccccc
Confidence 899999999986533 4333 4777777777662 279999999999864
No 173
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.48 E-value=1.7e-12 Score=102.59 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC------ccccccCcCcccceEEEEeee--------------CCeeEEEEeCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER------VVTVNSFQSEALRPVMVSRSK--------------GGFTLNIIDTPGLVE 97 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~------~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~liDTPG~~d 97 (236)
++|+++|++|+|||||++++++.. .......++.+.........+ .+..+.+|||||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 479999999999999999999741 111111112222222222222 26689999999973
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 98 ~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+.+... ...+|++++|++... ..+..+.+.+... ... ..|+++|+||+|+.
T Consensus 80 ------~~~~~~~~~--~~~~d~vi~VvD~~~-~~~~~~~~~~~~~-~~~----~~~~iiv~NK~Dl~ 133 (192)
T cd01889 80 ------SLIRTIIGG--AQIIDLMLLVVDATK-GIQTQTAECLVIG-EIL----CKKLIVVLNKIDLI 133 (192)
T ss_pred ------HHHHHHHHH--HhhCCEEEEEEECCC-CccHHHHHHHHHH-HHc----CCCEEEEEECcccC
Confidence 122222111 146899999966542 2333333333322 222 27999999999985
No 174
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.7e-12 Score=109.69 Aligned_cols=142 Identities=22% Similarity=0.327 Sum_probs=93.4
Q ss_pred cccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCc------CcccceE--EEEee
Q 026593 10 AGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ------SEALRPV--MVSRS 81 (236)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~------~~~~~~~--~~~~~ 81 (236)
.|+.+++.+... +...++ -.|+++++|++|.|||||+|+|++.+.......+ ..+.... .....
T Consensus 2 vg~~~lP~q~~r-------~~~KkG-~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie 73 (366)
T KOG2655|consen 2 VGFANLPNQVHR-------KSVKKG-FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE 73 (366)
T ss_pred CccccChHHHHH-------HHHhcC-CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec
Confidence 478888887722 122233 5699999999999999999999988543321111 1111111 12222
Q ss_pred eCCe--eEEEEeCCCCCCCCCCh-------HHHHHHHHHHHh-----------cCCCcEEEEEEeCCCCCCChHHHHHHH
Q 026593 82 KGGF--TLNIIDTPGLVEAGYVN-------YQALELIKGFLL-----------NKTIDVLLYADRLDAYRVDDLDRQIIK 141 (236)
Q Consensus 82 ~~~~--~~~liDTPG~~d~~~~~-------~~~~~~i~~~l~-----------~~~~~~il~v~~~d~~~~~~~~~~~l~ 141 (236)
-+|. +++++||||++|.-.-. +-+-+....+++ +..+|++||.++..+..+.+.|..+++
T Consensus 74 e~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk 153 (366)
T KOG2655|consen 74 ENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMK 153 (366)
T ss_pred CCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHH
Confidence 2333 78999999999853111 112222333332 347999999966666568999999998
Q ss_pred HHHHhhCccccCcEEEEEeCCCCC
Q 026593 142 AVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 142 ~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+.+. .++|.|+.|+|..
T Consensus 154 ~l~~~------vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 154 KLSKK------VNLIPVIAKADTL 171 (366)
T ss_pred HHhcc------ccccceeeccccC
Confidence 88876 7999999999987
No 175
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.47 E-value=2.9e-12 Score=97.94 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc-cccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh---HHHHHHHHHHHh
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---YQALELIKGFLL 114 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~---~~~~~~i~~~l~ 114 (236)
.|+++|.+|+|||||+|.+++... ...+.....+... ...... ..+.+|||||+.+..... ..+...+..++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~--~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLI--NFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeE--EEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999995432 2222222222222 122222 388999999987654321 223333334443
Q ss_pred c-CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 N-KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~-~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
. ...++++++++.+. ..+..+..+.+++.... .|+++|+||+|+.
T Consensus 78 ~~~~~~~~~~v~d~~~-~~~~~~~~~~~~l~~~~-----~~vi~v~nK~D~~ 123 (170)
T cd01876 78 NRENLKGVVLLIDSRH-GPTEIDLEMLDWLEELG-----IPFLVVLTKADKL 123 (170)
T ss_pred hChhhhEEEEEEEcCc-CCCHhHHHHHHHHHHcC-----CCEEEEEEchhcC
Confidence 2 35788888866543 23455556666665532 7999999999986
No 176
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.47 E-value=4.6e-13 Score=105.42 Aligned_cols=114 Identities=17% Similarity=0.215 Sum_probs=73.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
.+|+++|++|+|||||++.+....... ...++............+ ..+.+|||||.......... .+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~---~~------ 70 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL---SY------ 70 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchh---hc------
Confidence 489999999999999999998554321 111111122222333344 35789999998654432211 11
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|+++++++++... +......|+..+....+. .|+++|+||+|+.
T Consensus 71 ~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~ 118 (187)
T cd04129 71 SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLR 118 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhh
Confidence 4789999998886533 333334577777665432 8999999999985
No 177
>PRK09866 hypothetical protein; Provisional
Probab=99.47 E-value=3.9e-12 Score=114.28 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=49.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCC
Q 026593 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 164 (236)
..++|+||||+...... ...+.+.+.+ ..+|+|+||++... ..+..+..+++.+++. ++ ..|+++|+||+|.
T Consensus 230 ~QIIFVDTPGIhk~~~~--~L~k~M~eqL--~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP--HLQKMLNQQL--ARASAVLAVLDYTQ-LKSISDEEVREAILAV-GQ--SVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccch--HHHHHHHHHH--hhCCEEEEEEeCCC-CCChhHHHHHHHHHhc-CC--CCCEEEEEEcccC
Confidence 35899999999764322 1222222333 58999999955432 2677788888877764 21 1499999999998
Q ss_pred C
Q 026593 165 C 165 (236)
Q Consensus 165 ~ 165 (236)
.
T Consensus 302 ~ 302 (741)
T PRK09866 302 Q 302 (741)
T ss_pred C
Confidence 6
No 178
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.47 E-value=6.1e-13 Score=100.71 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=67.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCc
Q 026593 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 119 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~ 119 (236)
|+++|++|+|||||+|++.+..... ...+... ........++..+.+|||||.... ......++ ..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~--~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIPTVG--FNMRKVTKGNVTLKVWDLGGQPRF-------RSMWERYC--RGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccCCCC--cceEEEEECCEEEEEEECCCCHhH-------HHHHHHHH--hcCC
Confidence 7899999999999999999886422 1122222 112233456678999999997432 12222233 4789
Q ss_pred EEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 120 VLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 120 ~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++++|+++.... +.. ...++..+.... .....|+++|+||+|+.
T Consensus 70 ~ii~v~d~~~~~~~~~-~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 70 AIVYVVDAADRTALEA-AKNELHDLLEKP-SLEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEEEEEECCCHHHHHH-HHHHHHHHHcCh-hhcCCCEEEEEeCcccc
Confidence 999997664311 111 112222222211 11237999999999985
No 179
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.46 E-value=1.1e-13 Score=101.65 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=80.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++.+++|.+|+|||||+-.+....+ ..+-+......-...+...+|. .+.||||.|...+......+ -
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtF-s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitsty-------y-- 78 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTY-------Y-- 78 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccc-ccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHH-------c--
Confidence 5678999999999999999887643 2222222222333444444454 78999999984433222111 1
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|+++.+..-...-.+|++.+...+.. .|-++|+||.|..+
T Consensus 79 rgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 79 RGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPE 126 (198)
T ss_pred cCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCcc
Confidence 5899999999986644334568899999998875 89999999999853
No 180
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4.6e-13 Score=102.05 Aligned_cols=125 Identities=15% Similarity=0.157 Sum_probs=84.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccC-cCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSF-QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
..++.+++|.+|+|||.|+-.++...+..+.+. .+..-.....+..-...++.+|||.|+..+... .+.+.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv-------~~syY- 76 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSV-------TRSYY- 76 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHH-------HHHHh-
Confidence 357999999999999999999999886554432 122222233444445568999999999544322 22222
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCc
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN 171 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~ 171 (236)
.++-+.|+|+++++..-......||.-+++.... +.-+++++||+|+...+..+
T Consensus 77 -r~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~--NmvImLiGNKsDL~~rR~Vs 130 (216)
T KOG0098|consen 77 -RGAAGALLVYDITRRESFNHLTSWLEDARQHSNE--NMVIMLIGNKSDLEARREVS 130 (216)
T ss_pred -ccCcceEEEEEccchhhHHHHHHHHHHHHHhcCC--CcEEEEEcchhhhhcccccc
Confidence 4889999999997643223345677777776433 37789999999997544433
No 181
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.45 E-value=1.2e-12 Score=106.91 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=72.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccc-----------ccC------cCcccceEEEEeeeCCeeEEEEeCCCCCCCCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTV-----------NSF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 101 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~ 101 (236)
+|+++|++|+|||||+++|+....... .+. .+.+.........+.+..+.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 589999999999999999986422110 010 0111222345567788999999999996542
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 102 ~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+....+ ..+|++++|++... ........+.+.+.+. ..|+++++||+|+.
T Consensus 79 -~~~~~~l------~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~-----~~P~iivvNK~D~~ 129 (237)
T cd04168 79 -AEVERSL------SVLDGAILVISAVE-GVQAQTRILWRLLRKL-----NIPTIIFVNKIDRA 129 (237)
T ss_pred -HHHHHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccc
Confidence 2222222 37899999966543 2444445555555432 27999999999985
No 182
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.45 E-value=8.3e-13 Score=102.80 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccc-----ccC---------cCcccceEEEEeee-----CCeeEEEEeCCCCCCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTV-----NSF---------QSEALRPVMVSRSK-----GGFTLNIIDTPGLVEAG 99 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~-----~~~---------~~~~~~~~~~~~~~-----~~~~~~liDTPG~~d~~ 99 (236)
+|+++|.+|+|||||++++++...... ... .+.+.........+ .+..+.+|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999987532110 000 01111111112212 34578899999996542
Q ss_pred CChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 100 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 100 ~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
. .+..++ .++|++++|++... ..+..+...+..+.. . ..|+++|+||+|+.
T Consensus 82 ~-------~~~~~~--~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~---~--~~~iiiv~NK~Dl~ 132 (179)
T cd01890 82 Y-------EVSRSL--AACEGALLLVDATQ-GVEAQTLANFYLALE---N--NLEIIPVINKIDLP 132 (179)
T ss_pred H-------HHHHHH--HhcCeEEEEEECCC-CccHhhHHHHHHHHH---c--CCCEEEEEECCCCC
Confidence 1 222222 37999999977643 233333333322221 1 27899999999985
No 183
>PLN00023 GTP-binding protein; Provisional
Probab=99.45 E-value=1.1e-12 Score=110.21 Aligned_cols=122 Identities=19% Similarity=0.240 Sum_probs=76.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC---------------CeeEEEEeCCCCCCCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---------------GFTLNIIDTPGLVEAG 99 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~liDTPG~~d~~ 99 (236)
...+||+++|..|+|||||++.+.+..... ...+............++ ...+.||||+|...+.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~-~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIA-RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCccc-ccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 356899999999999999999999776321 111111111111222222 2468999999986543
Q ss_pred CChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCc----------cccCcEEEEEeCCCCCC
Q 026593 100 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK----------QIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 100 ~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~----------~~~~~~ivv~tk~D~~~ 166 (236)
..... +. .+++++|+|++++.......-..|++.+...... ....|++||+||+|+.+
T Consensus 98 sL~~~-------yy--r~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 98 DCRSL-------FY--SQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhHH-------hc--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 22211 11 5899999998886533222335677777765320 11378999999999963
No 184
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.45 E-value=7.5e-13 Score=102.18 Aligned_cols=113 Identities=20% Similarity=0.341 Sum_probs=68.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEE-----------------------------------------
Q 026593 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV----------------------------------------- 78 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 78 (236)
|+++|..++|||||+|+|+|.++...+..+.+.......
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999999754433222211111100
Q ss_pred --------------EeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHH
Q 026593 79 --------------SRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVT 144 (236)
Q Consensus 79 --------------~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~ 144 (236)
........+.|+||||+.+......+ .+.+++ +.+|+++||.+.+. .++..+...+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~---~~~~~~--~~~d~vi~V~~~~~-~~~~~~~~~l~~~~ 154 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE---ITEEYL--PKADVVIFVVDANQ-DLTESDMEFLKQML 154 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH---HHHHHH--STTEEEEEEEETTS-TGGGHHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHH---HHHHhh--ccCCEEEEEeccCc-ccchHHHHHHHHHh
Confidence 00111235899999999775544332 233344 68999999966543 25555555555444
Q ss_pred HhhCccccCcEEEEEeCC
Q 026593 145 GTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 145 ~~~~~~~~~~~ivv~tk~ 162 (236)
.... ..+++|+||+
T Consensus 155 ~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 155 DPDK----SRTIFVLNKA 168 (168)
T ss_dssp TTTC----SSEEEEEE-G
T ss_pred cCCC----CeEEEEEcCC
Confidence 4332 5599999985
No 185
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.44 E-value=6.6e-13 Score=110.31 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcc-----ccc------------cCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVV-----TVN------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 101 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~ 101 (236)
+|+++|++|+|||||+++|+..... .+. ...+.+.........+.+..+.+|||||..++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 5899999999999999999732110 011 011223333445667889999999999986532
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 102 ~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+ +..++ ..+|++++|.+... .....+..++..+.+.. .|+++++||+|+.
T Consensus 79 -~~----~~~~l--~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~~-----~p~ivviNK~D~~ 129 (270)
T cd01886 79 -IE----VERSL--RVLDGAVAVFDAVA-GVEPQTETVWRQADRYN-----VPRIAFVNKMDRT 129 (270)
T ss_pred -HH----HHHHH--HHcCEEEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 12 22223 37899999955432 25555566666555432 7899999999985
No 186
>CHL00071 tufA elongation factor Tu
Probab=99.43 E-value=2.7e-12 Score=112.84 Aligned_cols=120 Identities=10% Similarity=0.060 Sum_probs=78.0
Q ss_pred HhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccc---------------cCcCcccceEEEEeeeCCeeEEEEeCCCC
Q 026593 31 KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVN---------------SFQSEALRPVMVSRSKGGFTLNIIDTPGL 95 (236)
Q Consensus 31 ~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~liDTPG~ 95 (236)
....++.++|+++|++++|||||+++|++......+ ...+.+.......+..++..+.++||||.
T Consensus 6 ~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 6 FERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (409)
T ss_pred ccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh
Confidence 344567899999999999999999999975221100 00122222222334456778999999996
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCc-EEEEEeCCCCC
Q 026593 96 VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (236)
Q Consensus 96 ~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivv~tk~D~~ 165 (236)
. +....+...+ ..+|++++|.+... .....+.+.+..+... + .| +++++||+|+.
T Consensus 86 ~-------~~~~~~~~~~--~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~-g----~~~iIvvvNK~D~~ 141 (409)
T CHL00071 86 A-------DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTKEHILLAKQV-G----VPNIVVFLNKEDQV 141 (409)
T ss_pred H-------HHHHHHHHHH--HhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEEccCCC
Confidence 3 2333333333 47899999965542 2556666766665543 2 45 78999999986
No 187
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.42 E-value=2.7e-12 Score=98.45 Aligned_cols=109 Identities=18% Similarity=0.159 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|.+|+|||||+.+++....... .++. ..........++ ..+.+|||+|..+. . ..
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~---~~------ 63 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL--ESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----Q---FA------ 63 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC--CCCC-ccceEEEEEECCEEEEEEEEECCCCCch-----h---HH------
Confidence 5899999999999999999886653221 1111 112223345566 45889999998531 1 11
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +... ..+++.+...... ...|+++|+||.|+.
T Consensus 64 ~~~~~~ilv~d~~~~~sf~~~-~~~~~~i~~~~~~-~~~piilvgnK~Dl~ 112 (158)
T cd04103 64 SWVDAVIFVFSLENEASFQTV-YNLYHQLSSYRNI-SEIPLILVGTQDAIS 112 (158)
T ss_pred hcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCC-CCCCEEEEeeHHHhh
Confidence 3789999999886533 4433 4577777665421 237999999999984
No 188
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.42 E-value=2e-12 Score=114.28 Aligned_cols=119 Identities=15% Similarity=0.143 Sum_probs=76.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccc------------------------------CcCcccceEEEEeeeC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKG 83 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~ 83 (236)
.++.++|+++|++++|||||+++|+......... ..+.|.........++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3577999999999999999999998543221110 1233444444556677
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCC-CCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
+..+.+|||||+.++.. . +...+ ..+|++++|++.+.. .+.....+.+..+. ..+. .++++++||+
T Consensus 83 ~~~i~liDtpG~~~~~~---~----~~~~~--~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~~---~~iivviNK~ 149 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVK---N----MITGA--SQADAAVLVVAADDAGGVMPQTREHVFLAR-TLGI---NQLIVAINKM 149 (425)
T ss_pred CeEEEEEECCCcccchh---h----Hhhch--hcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcCC---CeEEEEEEcc
Confidence 88999999999754321 1 11111 479999999776531 23333444444433 2332 5799999999
Q ss_pred CCC
Q 026593 163 QLC 165 (236)
Q Consensus 163 D~~ 165 (236)
|+.
T Consensus 150 Dl~ 152 (425)
T PRK12317 150 DAV 152 (425)
T ss_pred ccc
Confidence 986
No 189
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4e-12 Score=93.58 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=80.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
++|+++|..|+|||.|+.+++..-+.... ...........+...+| .++.+|||.|+..++.....+.
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgq-gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyy--------- 77 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQ-GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYY--------- 77 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCC-CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHh---------
Confidence 79999999999999999999876532221 11111222333444454 4789999999966654443332
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|+++......+-..+|+..|.++.... .-.|+|+||.|+.+.
T Consensus 78 rsahalilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 78 RSAHALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLADR 127 (213)
T ss_pred hhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhhh
Confidence 37899999999876432233468888888886543 556999999998743
No 190
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.42 E-value=3e-12 Score=104.95 Aligned_cols=123 Identities=23% Similarity=0.293 Sum_probs=90.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHH-----HHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQAL-----ELIK 110 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~-----~~i~ 110 (236)
..++|+++|.|++|||||.|.+.|.++..++....+|.......++-+...++|+||||+-.........+ +..+
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 55899999999999999999999999988887777776666667777778999999999977654332221 1122
Q ss_pred HHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 111 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 111 ~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+.+ ..+|.++++++..+.+- ....+.++.+.++.. .|-++|.||.|..
T Consensus 151 ~a~--q~AD~vvVv~Das~tr~-~l~p~vl~~l~~ys~----ips~lvmnkid~~ 198 (379)
T KOG1423|consen 151 DAA--QNADCVVVVVDASATRT-PLHPRVLHMLEEYSK----IPSILVMNKIDKL 198 (379)
T ss_pred HHH--hhCCEEEEEEeccCCcC-ccChHHHHHHHHHhc----CCceeeccchhcc
Confidence 222 58999999977764331 222455666665532 7899999999986
No 191
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.41 E-value=2.4e-12 Score=117.63 Aligned_cols=113 Identities=20% Similarity=0.295 Sum_probs=78.8
Q ss_pred cCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEE
Q 026593 44 GKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLY 123 (236)
Q Consensus 44 G~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~ 123 (236)
|.+|+|||||+|+++|... .+++.++.|.........+++..+.+|||||+.+......+ .+..+.++...++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~-e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE-EEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH-HHHHHHHHhhcCCCEEEE
Confidence 8999999999999999874 56677777766666667778889999999999876533211 112233444468999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 124 ADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 124 v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
| +|..++.. ...+..++.+. ..|+++|+||+|+.+
T Consensus 79 V--vDat~ler-~l~l~~ql~~~-----~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 79 V--VDASNLER-NLYLTLQLLEL-----GIPMILALNLVDEAE 113 (591)
T ss_pred E--ecCCcchh-hHHHHHHHHhc-----CCCEEEEEehhHHHH
Confidence 9 54444432 23333333332 289999999999863
No 192
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.41 E-value=1.6e-12 Score=103.06 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=70.2
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhCCCcc---ccccCcCccc--ceEE-E-------EeeeCC--eeEEEEeCCCCCCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVN-SVIGERVV---TVNSFQSEAL--RPVM-V-------SRSKGG--FTLNIIDTPGLVEAGY 100 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin-~l~~~~~~---~~~~~~~~~~--~~~~-~-------~~~~~~--~~~~liDTPG~~d~~~ 100 (236)
.++|+++|.+|+|||||+. .+.+.... ......++.. .... . ...+++ ..+.+|||+|..+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 55543211 1111111110 1111 0 012333 47899999998531
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 101 ~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
. +. ....++|++++|++++... +......|++.+..... ..|+++|+||+|+.
T Consensus 80 ~--------~~-~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~ 133 (195)
T cd01873 80 D--------RR-FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLR 133 (195)
T ss_pred h--------hc-ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhcc
Confidence 1 10 1125899999999986432 43333357777766543 27999999999985
No 193
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=2.3e-12 Score=94.57 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=93.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcC-ccc--ceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-EAL--RPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
++++++|.+.+|||||+-+.++..... .+-+ ... +....-..-...++.+|||.|+....... ...+
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~--afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiT---Tayy----- 91 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTS--AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTIT---TAYY----- 91 (193)
T ss_pred eeEEEEccCCccchhhhHHhhcccccc--ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHH---HHHh-----
Confidence 699999999999999999999886422 1111 111 11111112233589999999985432211 1112
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHHHhhchHHHHHHHHhhccCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLG 194 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 194 (236)
++++++++++++.+..--..-..|..+|+...-.+ .|+|+|.||||+.+.+..+.+.-..-..+.=.++++.+++++
T Consensus 92 -RgamgfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~N 168 (193)
T KOG0093|consen 92 -RGAMGFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKEN 168 (193)
T ss_pred -hccceEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccc
Confidence 59999999999876443234466777777764443 899999999999766655655544433333346777777766
Q ss_pred CC
Q 026593 195 KH 196 (236)
Q Consensus 195 ~~ 196 (236)
..
T Consensus 169 in 170 (193)
T KOG0093|consen 169 IN 170 (193)
T ss_pred cc
Confidence 44
No 194
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.40 E-value=1.8e-12 Score=104.29 Aligned_cols=120 Identities=21% Similarity=0.266 Sum_probs=79.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC-CeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
..++|+++|..|+|||||++++.+........................ ...+.+|||+|+.+.. .....+.
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~-------~~~~~y~- 75 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR-------SLRPEYY- 75 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH-------HHHHHHh-
Confidence 348999999999999999999998875432221111111111111111 4568999999985432 1111221
Q ss_pred cCCCcEEEEEEeCCC-CCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.+++++++|++... .++...-..+...+....+. ..|+++|+||+|+.+
T Consensus 76 -~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~ 125 (219)
T COG1100 76 -RGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFD 125 (219)
T ss_pred -cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEeccccccc
Confidence 58999999987754 34555556777777776642 289999999999974
No 195
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.40 E-value=1.9e-12 Score=97.09 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=62.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
+|+++|++|+|||||+|++.+.... .. .+ ....+.+ .+|||||.... .....+.+... ..++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t-----~~~~~~~---~~iDt~G~~~~---~~~~~~~~~~~--~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KT-----QAVEYND---GAIDTPGEYVE---NRRLYSALIVT--AADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cc-----eeEEEcC---eeecCchhhhh---hHHHHHHHHHH--hhcC
Confidence 7999999999999999999987631 11 11 1122222 68999997311 12222222222 2689
Q ss_pred cEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 119 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 119 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
|++++|++++... +.....+.. ..+ .|+++|+||+|+.
T Consensus 64 d~vilv~d~~~~~-s~~~~~~~~----~~~----~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 64 DVIALVQSATDPE-SRFPPGFAS----IFV----KPVIGLVTKIDLA 101 (142)
T ss_pred CEEEEEecCCCCC-cCCChhHHH----hcc----CCeEEEEEeeccC
Confidence 9999998775432 111223322 222 4999999999985
No 196
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.40 E-value=4.5e-12 Score=115.43 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=75.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe-eEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.+.+|+++|++++|||||+++|.+..+.. ...++.|.........+.+. .+.||||||+.++.... .+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r-------~rg-- 155 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMR-------ARG-- 155 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHH-------Hhh--
Confidence 55799999999999999999999876532 22333343333444555444 89999999986653211 111
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+|++++|++.+.. ......+.+...... ..|+++++||+|+.
T Consensus 156 a~~aDiaILVVda~dg-v~~qT~e~i~~~~~~-----~vPiIVviNKiDl~ 200 (587)
T TIGR00487 156 AKVTDIVVLVVAADDG-VMPQTIEAISHAKAA-----NVPIIVAINKIDKP 200 (587)
T ss_pred hccCCEEEEEEECCCC-CCHhHHHHHHHHHHc-----CCCEEEEEECcccc
Confidence 1478999999776532 333334444433321 27999999999985
No 197
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.39 E-value=8.8e-12 Score=103.46 Aligned_cols=113 Identities=11% Similarity=0.118 Sum_probs=71.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccc---------------cccCcC------cccceEEEEeeeCCeeEEEEeCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVT---------------VNSFQS------EALRPVMVSRSKGGFTLNIIDTPGLV 96 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~---------------~~~~~~------~~~~~~~~~~~~~~~~~~liDTPG~~ 96 (236)
-+|+++|++|+|||||+++|+...... +.++.. .+.........+.+..+.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 379999999999999999998532111 111111 11122334567888999999999986
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 97 d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++. .+.. .++ ..+|++++|++... ........+++.... . ..|+++++||+|..
T Consensus 83 df~---~~~~----~~l--~~aD~~IlVvda~~-g~~~~~~~i~~~~~~-~----~~P~iivvNK~D~~ 136 (267)
T cd04169 83 DFS---EDTY----RTL--TAVDSAVMVIDAAK-GVEPQTRKLFEVCRL-R----GIPIITFINKLDRE 136 (267)
T ss_pred HHH---HHHH----HHH--HHCCEEEEEEECCC-CccHHHHHHHHHHHh-c----CCCEEEEEECCccC
Confidence 542 1222 222 37899999966542 244333444433322 1 27899999999974
No 198
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.39 E-value=5.1e-12 Score=117.89 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=78.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
.+..|+++|++++|||||+++|.+..+. .....+.+.....+...+++..+.||||||+.++..... ...
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~-------rga-- 358 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRA-------RGA-- 358 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHH-------hhh--
Confidence 5689999999999999999999987653 222333444444456667788999999999876532221 111
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++.+.. ........+...... ..|+++++||+|+.
T Consensus 359 ~~aDiaILVVdAddG-v~~qT~e~i~~a~~~-----~vPiIVviNKiDl~ 402 (787)
T PRK05306 359 QVTDIVVLVVAADDG-VMPQTIEAINHAKAA-----GVPIIVAINKIDKP 402 (787)
T ss_pred hhCCEEEEEEECCCC-CCHhHHHHHHHHHhc-----CCcEEEEEECcccc
Confidence 478999999776542 333334444433322 27899999999984
No 199
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.38 E-value=2.4e-12 Score=102.42 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=69.3
Q ss_pred EcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC--CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcE
Q 026593 43 MGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDV 120 (236)
Q Consensus 43 vG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~ 120 (236)
+|..|+|||||+++++...... ...+............++ ...+.+|||||...+...... ++ .++|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~-------~~--~~ad~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDG-------YY--IQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHH-------Hh--cCCCE
Confidence 5999999999999999655311 111111112222222333 358899999998654332221 12 48999
Q ss_pred EEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 121 LLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 121 il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+++|+++.... +.. -..|+..+.+... ..|+++|+||+|+.
T Consensus 71 ~ilV~D~t~~~S~~~-i~~w~~~i~~~~~---~~piilvgNK~Dl~ 112 (200)
T smart00176 71 AIIMFDVTARVTYKN-VPNWHRDLVRVCE---NIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEECCChHHHHH-HHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence 99998886532 333 2457777776543 38999999999985
No 200
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.38 E-value=5.5e-12 Score=111.06 Aligned_cols=131 Identities=20% Similarity=0.270 Sum_probs=91.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEE-EEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVM-VSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
..++.+||+++|..|+||||||-+++...+.. ..|..-..... ...........++||+.-.+ ......++++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~--~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~---~~~~l~~Eir- 78 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVD--AVPRRLPRILIPADVTPENVPTSIVDTSSDSD---DRLCLRKEIR- 78 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccc--cccccCCccccCCccCcCcCceEEEecccccc---hhHHHHHHHh-
Confidence 34578999999999999999999999887432 22221111111 11122334578999984322 1223345554
Q ss_pred HHhcCCCcEEEEEEeCCCC-CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHH
Q 026593 112 FLLNKTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV 174 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~ 174 (236)
.+|+|++++..|.. ++......|+..+++.+|.....|+|+|+||+|+.+....+.+.
T Consensus 79 -----kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~ 137 (625)
T KOG1707|consen 79 -----KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV 137 (625)
T ss_pred -----hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence 89999999988763 36666788999999999888889999999999997555444444
No 201
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.38 E-value=4.7e-12 Score=100.26 Aligned_cols=126 Identities=19% Similarity=0.249 Sum_probs=82.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
...+|+++|.+|+|||+|+..+.+.... ..+.++....+......++. .+.|+||+|..++..+.+..+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~--~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~------- 72 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFV--EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYI------- 72 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccc--cccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhh-------
Confidence 4579999999999999999998887743 23333333334444444443 678999999655543332221
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHH
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV 174 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~ 174 (236)
.+.|++++|++++... |.. ...+...|....+.+ ..|+++|+||+|+...+..+.++
T Consensus 73 --~~~~gF~lVysitd~~SF~~-~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~ee 130 (196)
T KOG0395|consen 73 --RNGDGFLLVYSITDRSSFEE-AKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEEE 130 (196)
T ss_pred --ccCcEEEEEEECCCHHHHHH-HHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHHH
Confidence 4789999999996533 332 345566664444433 27999999999997544545554
No 202
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.37 E-value=4.3e-12 Score=98.96 Aligned_cols=124 Identities=18% Similarity=0.248 Sum_probs=79.0
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHH
Q 026593 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 105 (236)
Q Consensus 26 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~ 105 (236)
+++.+... .+..+|+++|..||||||+++.+.......+. .|.........+.+..+.+||.+|........+
T Consensus 4 ~~~~~~~~-~~~~~ililGl~~sGKTtll~~l~~~~~~~~~----pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~-- 76 (175)
T PF00025_consen 4 VLSKLKSK-KKEIKILILGLDGSGKTTLLNRLKNGEISETI----PTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWK-- 76 (175)
T ss_dssp HHHHCTTT-TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEE----EESSEEEEEEEETTEEEEEEEESSSGGGGGGGG--
T ss_pred HHHHhccc-CcEEEEEEECCCccchHHHHHHhhhccccccC----cccccccceeeeCcEEEEEEeccccccccccce--
Confidence 44445433 47799999999999999999999976543221 233344556677899999999999743322222
Q ss_pred HHHHHHHHhcCCCcEEEEEEeCCCC-CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 106 LELIKGFLLNKTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 106 ~~~i~~~l~~~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+. .++|+++||++.... ++.+. ...+..+.... .-...|+++++||.|..
T Consensus 77 -----~y~--~~~~~iIfVvDssd~~~l~e~-~~~L~~ll~~~-~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 77 -----SYF--QNADGIIFVVDSSDPERLQEA-KEELKELLNDP-ELKDIPILILANKQDLP 128 (175)
T ss_dssp -----GGH--TTESEEEEEEETTGGGGHHHH-HHHHHHHHTSG-GGTTSEEEEEEESTTST
T ss_pred -----eec--cccceeEEEEecccceeeccc-ccchhhhcchh-hcccceEEEEecccccc
Confidence 122 589999999554321 22222 22333333321 11248999999999985
No 203
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.37 E-value=3.5e-12 Score=97.79 Aligned_cols=102 Identities=19% Similarity=0.278 Sum_probs=61.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
+|+++|.+|+|||||+|+|.|..... ... ....+... .+|||||+.... .+..+.+...+ .++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--------~~~--~~v~~~~~--~~iDtpG~~~~~---~~~~~~~~~~~--~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--------RKT--QAVEFNDK--GDIDTPGEYFSH---PRWYHALITTL--QDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--------ccc--eEEEECCC--CcccCCccccCC---HHHHHHHHHHH--hcC
Confidence 79999999999999999999865211 111 11122222 269999985443 22333332222 589
Q ss_pred cEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 119 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 119 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
|++++|++.+... +.... ++.+. .. ..|+++++||+|+.
T Consensus 66 d~il~v~d~~~~~-s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 66 DMLIYVHGANDPE-SRLPA----GLLDI-GV--SKRQIAVISKTDMP 104 (158)
T ss_pred CEEEEEEeCCCcc-cccCH----HHHhc-cC--CCCeEEEEEccccC
Confidence 9999997765322 11111 12221 11 27899999999984
No 204
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.37 E-value=8e-12 Score=103.92 Aligned_cols=112 Identities=15% Similarity=0.228 Sum_probs=70.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccc--ccC---------------cCcccceEEEEeeeCCeeEEEEeCCCCCCCCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTV--NSF---------------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 101 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~ 101 (236)
+|+++|++|+|||||+++|++...... ... ...+.........+++..+.+|||||..++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 589999999999999999985432110 000 011122233455678889999999998542
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 102 ~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+..++ ..+|++++|++... .........++.+... ..|.++++||+|..
T Consensus 78 ----~~~~~~~l--~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~-----~~p~iivvNK~D~~ 129 (268)
T cd04170 78 ----VGETRAAL--RAADAALVVVSAQS-GVEVGTEKLWEFADEA-----GIPRIIFINKMDRE 129 (268)
T ss_pred ----HHHHHHHH--HHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECCccC
Confidence 12222233 37899999966543 2333334444444332 27899999999985
No 205
>PLN03126 Elongation factor Tu; Provisional
Probab=99.35 E-value=4.2e-11 Score=106.75 Aligned_cols=119 Identities=10% Similarity=0.056 Sum_probs=75.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCccccc---------------cCcCcccceEEEEeeeCCeeEEEEeCCCCCC
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVN---------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d 97 (236)
..++.++|+++|+.++|||||+++|++......+ ...+.+.......+.+++..+.+|||||+.+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 4567899999999999999999999963211110 0111222222233455778999999999843
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 98 ~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+...+...+ ..+|+.++|++.+. .......+.+..+... +. +++++++||+|+.
T Consensus 157 -------f~~~~~~g~--~~aD~ailVVda~~-G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~ 210 (478)
T PLN03126 157 -------YVKNMITGA--AQMDGAILVVSGAD-GPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQV 210 (478)
T ss_pred -------HHHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEeccccc
Confidence 333333223 47899999966542 2445555555554433 31 3488999999986
No 206
>PRK12735 elongation factor Tu; Reviewed
Probab=99.35 E-value=3.5e-11 Score=105.37 Aligned_cols=119 Identities=10% Similarity=0.109 Sum_probs=74.3
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCCCc------c---c-cc-----cCcCcccceEEEEeeeCCeeEEEEeCCCCC
Q 026593 32 QENVNTLTILVMGKGGVGKSSTVNSVIGERV------V---T-VN-----SFQSEALRPVMVSRSKGGFTLNIIDTPGLV 96 (236)
Q Consensus 32 ~~~~~~~~IllvG~~g~GKSSlin~l~~~~~------~---~-~~-----~~~~~~~~~~~~~~~~~~~~~~liDTPG~~ 96 (236)
++.++.++|+++|++++|||||+++|++... . . .. ...+.|..........++..+.++||||+.
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 4556889999999999999999999996210 0 0 00 011222222233344567789999999973
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCc-EEEEEeCCCCC
Q 026593 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (236)
Q Consensus 97 d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivv~tk~D~~ 165 (236)
++...+...+ ..+|++++|++... .......+.+..+... + .| +++++||+|+.
T Consensus 87 -------~f~~~~~~~~--~~aD~~llVvda~~-g~~~qt~e~l~~~~~~-g----i~~iivvvNK~Dl~ 141 (396)
T PRK12735 87 -------DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKCDMV 141 (396)
T ss_pred -------HHHHHHHhhh--ccCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEecCCc
Confidence 2333333222 47899999966543 2444455555554432 2 45 55689999986
No 207
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.35 E-value=1.3e-11 Score=99.26 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=70.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEe--eeCCeeEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR--SKGGFTLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
....++|+++|++|+|||||+++++...... ...+........... ......+.+|||||...+..... .
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~-------~ 77 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEK-KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRD-------G 77 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhH-------H
Confidence 3467999999999999999997665443211 111111111111122 22345789999999754422211 1
Q ss_pred HHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+. ...+++++|+++.... +.. ...++..+..... ..|+++|+||+|+.
T Consensus 78 ~~--~~~~~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~---~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 78 YY--IKGQCAIIMFDVTSRITYKN-VPNWHRDIVRVCE---NIPIVLVGNKVDVK 126 (215)
T ss_pred Hh--ccCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCC---CCCEEEEEECccCc
Confidence 11 4789999998875422 322 2355555555432 27899999999985
No 208
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.34 E-value=6.3e-12 Score=93.62 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=65.7
Q ss_pred EEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee--CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCc
Q 026593 42 VMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 119 (236)
Q Consensus 42 lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~ 119 (236)
++|++|+|||||+|++++.........+ ............ .+..+.+|||||+.+..... ..+. ..+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~--~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYET-TIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR-------RLYY--RGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccccc-chhheeeEEEEECCEEEEEEEEecCChHHHHhHH-------HHHh--cCCC
Confidence 5799999999999999988752111111 112222222222 35689999999986543211 1111 5899
Q ss_pred EEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 120 VLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 120 ~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
++++|++..... +..+.................|+++|+||+|+.+.
T Consensus 71 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 71 GIILVYDVTDRE-SFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred EEEEEEECcCHH-HHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 999997765421 11111111011111122334999999999998643
No 209
>PRK12736 elongation factor Tu; Reviewed
Probab=99.34 E-value=3e-11 Score=105.74 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=75.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCccc----------cc-----cCcCcccceEEEEeeeCCeeEEEEeCCCCCC
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVT----------VN-----SFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d 97 (236)
..++.++|+++|+.++|||||+++|++..... .. ...+.|.......+..++..+.+|||||..
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~- 86 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA- 86 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH-
Confidence 46688999999999999999999998642100 00 011223333333344466789999999974
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCc-EEEEEeCCCCC
Q 026593 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (236)
Q Consensus 98 ~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivv~tk~D~~ 165 (236)
++...+...+ ..+|++++|++.+. .....+.+.+..+... + .| +++++||+|+.
T Consensus 87 ------~f~~~~~~~~--~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~-g----~~~~IvviNK~D~~ 141 (394)
T PRK12736 87 ------DYVKNMITGA--AQMDGAILVVAATD-GPMPQTREHILLARQV-G----VPYLVVFLNKVDLV 141 (394)
T ss_pred ------HHHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCEEEEEEEecCCc
Confidence 2222232222 47899999966542 2455566666665543 2 45 78999999986
No 210
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.34 E-value=2.7e-11 Score=97.36 Aligned_cols=112 Identities=17% Similarity=0.192 Sum_probs=66.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc------------cC------cCcccceEEEEeee-----CCeeEEEEeCCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVN------------SF------QSEALRPVMVSRSK-----GGFTLNIIDTPGL 95 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~------------~~------~~~~~~~~~~~~~~-----~~~~~~liDTPG~ 95 (236)
+|+++|+.|+|||||+++|++....... +. .+.+.........+ ....+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999865422110 00 00111111111111 2357899999998
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 96 VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 96 ~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++. ......+ ..+|++++|++... ..+.....+++..... ..|+++|+||+|+.
T Consensus 82 ~~f~---~~~~~~~------~~aD~~llVvD~~~-~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFM---DEVAAAL------RLSDGVVLVVDVVE-GVTSNTERLIRHAILE-----GLPIVLVINKIDRL 136 (213)
T ss_pred cchH---HHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 7642 1222222 37899999966543 2333334444433321 27999999999986
No 211
>COG2262 HflX GTPases [General function prediction only]
Probab=99.34 E-value=5.4e-11 Score=101.46 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=83.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC-CeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.-..|.++|-|++|||||.|+|++..++..+ -...|..+......+. |+.+.+-||.||- +...+.....++.-+.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d-~LFATLdpttR~~~l~~g~~vlLtDTVGFI--~~LP~~LV~AFksTLE 267 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVAD-QLFATLDPTTRRIELGDGRKVLLTDTVGFI--RDLPHPLVEAFKSTLE 267 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccc-cccccccCceeEEEeCCCceEEEecCccCc--ccCChHHHHHHHHHHH
Confidence 3479999999999999999999998865433 3334445555544444 6899999999994 3344455555555553
Q ss_pred c-CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 N-KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~-~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
+ ..+|+++.|.+..............+.|.+ .+... .|+++|+||+|..+
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e-l~~~~-~p~i~v~NKiD~~~ 318 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAE-IGADE-IPIILVLNKIDLLE 318 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHH-cCCCC-CCEEEEEecccccC
Confidence 3 589999999554332222222223333443 33222 89999999999763
No 212
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.34 E-value=3.4e-11 Score=96.11 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=65.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccc-cccCc-CcccceEEEEeee---------------------------------
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVT-VNSFQ-SEALRPVMVSRSK--------------------------------- 82 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~-~~~~~-~~~~~~~~~~~~~--------------------------------- 82 (236)
++|+++|+.|+|||||+.+|.+..... ..... +.+.........+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 478999999999999999998762101 11000 0000000000000
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
....+.||||||.. .....+...+ ..+|++++|++.+...........+..+.. .+. .|+++|+||+
T Consensus 81 ~~~~i~~iDtPG~~-------~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK~ 147 (203)
T cd01888 81 LVRHVSFVDCPGHE-------ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNKI 147 (203)
T ss_pred cccEEEEEECCChH-------HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEch
Confidence 12679999999963 2222222222 478999999776532222233344444432 221 5799999999
Q ss_pred CCC
Q 026593 163 QLC 165 (236)
Q Consensus 163 D~~ 165 (236)
|+.
T Consensus 148 Dl~ 150 (203)
T cd01888 148 DLV 150 (203)
T ss_pred hcc
Confidence 985
No 213
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.34 E-value=9e-12 Score=92.76 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=61.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
||+++|++|||||||+++|.|.... ..+++ ...+.+ .+|||||=+-.+. ...+.+.. ....+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--------~~KTq--~i~~~~---~~IDTPGEyiE~~---~~y~aLi~--ta~da 64 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--------YKKTQ--AIEYYD---NTIDTPGEYIENP---RFYHALIV--TAQDA 64 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--------cCccc--eeEecc---cEEECChhheeCH---HHHHHHHH--HHhhC
Confidence 8999999999999999999997741 11111 122233 3599999532221 22222211 22589
Q ss_pred cEEEEEEeCCCCC--CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 119 DVLLYADRLDAYR--VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 119 ~~il~v~~~d~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
|+|+++.+.+... +.+ .|..-+.+|+|-|+||+|+.
T Consensus 65 d~V~ll~dat~~~~~~pP-----------~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPP-----------GFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred CEEEEEecCCCCCccCCc-----------hhhcccCCCEEEEEECccCc
Confidence 9999997765432 222 22222348999999999996
No 214
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.33 E-value=3.6e-11 Score=97.06 Aligned_cols=112 Identities=15% Similarity=0.218 Sum_probs=68.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccC---------------cCcccceEEEEeeeC----------CeeEEEEeCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSF---------------QSEALRPVMVSRSKG----------GFTLNIIDTP 93 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~----------~~~~~liDTP 93 (236)
+|+++|+.++|||||+.+|+.......... .+.+.........+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999985432111000 011111111122222 5678999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 94 GLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 94 G~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
|..++.. +....+ ..+|++++|++... .........++..... ..|+++|+||+|+.
T Consensus 82 G~~~f~~---~~~~~l------~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~-----~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSS---EVTAAL------RLCDGALVVVDAVE-GVCVQTETVLRQALKE-----RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHH---HHHHHH------HhcCeeEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 9976432 222222 38999999977643 2444445555544432 17899999999975
No 215
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.33 E-value=2.6e-11 Score=90.65 Aligned_cols=126 Identities=22% Similarity=0.329 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH
Q 026593 24 IELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY 103 (236)
Q Consensus 24 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~ 103 (236)
..++++.+.+.+ +++|+++|..|+||||++++|.+.+...+++ +......+..+.+..+.+||.-|+-...
T Consensus 4 lsilrk~k~ker-E~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGGq~~lr---- 74 (185)
T KOG0073|consen 4 LSILRKQKLKER-EVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGGQKTLR---- 74 (185)
T ss_pred HHHHHHHHhhhh-eeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCCcchhH----
Confidence 345566665554 8999999999999999999999998544433 4455667778899999999999874322
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeC-CCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 104 QALELIKGFLLNKTIDVLLYADRL-DAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 104 ~~~~~i~~~l~~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+..+.|. ...|+++||++. |..++.+ ....++.+... ..-...|++++.||.|+.
T Consensus 75 ---~~W~nYf--estdglIwvvDssD~~r~~e-~~~~L~~lL~e-erlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 75 ---SYWKNYF--ESTDGLIWVVDSSDRMRMQE-CKQELTELLVE-ERLAGAPLLVLANKQDLP 130 (185)
T ss_pred ---HHHHHhh--hccCeEEEEEECchHHHHHH-HHHHHHHHHhh-hhhcCCceEEEEecCcCc
Confidence 2222333 378999999665 2222332 23333333321 112337999999999985
No 216
>PLN03127 Elongation factor Tu; Provisional
Probab=99.32 E-value=8.3e-11 Score=104.21 Aligned_cols=119 Identities=9% Similarity=0.077 Sum_probs=77.9
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCC------Ccccc----c-----cCcCcccceEEEEeeeCCeeEEEEeCCCCC
Q 026593 32 QENVNTLTILVMGKGGVGKSSTVNSVIGE------RVVTV----N-----SFQSEALRPVMVSRSKGGFTLNIIDTPGLV 96 (236)
Q Consensus 32 ~~~~~~~~IllvG~~g~GKSSlin~l~~~------~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~liDTPG~~ 96 (236)
...++.++|+++|+.++|||||+++|++. ..... . ...+.|.......+..++..+.++||||+.
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 34668899999999999999999999743 10000 0 112333344444555667789999999985
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCc-EEEEEeCCCCC
Q 026593 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (236)
Q Consensus 97 d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivv~tk~D~~ 165 (236)
+ +...+...+ ..+|++++|.+.+. .....+.+.+..+... + .| +++++||+|+.
T Consensus 136 ~-------f~~~~~~g~--~~aD~allVVda~~-g~~~qt~e~l~~~~~~-g----ip~iIvviNKiDlv 190 (447)
T PLN03127 136 D-------YVKNMITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQV-G----VPSLVVFLNKVDVV 190 (447)
T ss_pred c-------hHHHHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEeeccC
Confidence 3 222222222 36999999966432 2556666776666543 2 56 67899999986
No 217
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.32 E-value=8.2e-12 Score=95.12 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=78.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|++.|.+|+|||||.|.+...+...-. .......-.......+++ .+.+|||.|+..+....- .
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qy-kaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~---------a 77 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQY-KATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGV---------A 77 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHh-ccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccc---------c
Confidence 5699999999999999999999987742211 111122222333334444 678999999966543331 1
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCc-cccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~ 165 (236)
..+++|..++|++++... +...+..--+.+...-.. .-.-|+||++||+|.-
T Consensus 78 FYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 78 FYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred eecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 225999999999997644 554444333444433322 2347899999999985
No 218
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.31 E-value=7.3e-11 Score=95.51 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc------------cC-cCccc------------------------ceEEEEee
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVN------------SF-QSEAL------------------------RPVMVSRS 81 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~------------~~-~~~~~------------------------~~~~~~~~ 81 (236)
+|+++|..++|||||++++......... +. .+.+. ........
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5889999999999999999853211000 00 00000 00001223
Q ss_pred eCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeC
Q 026593 82 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (236)
Q Consensus 82 ~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk 161 (236)
..+..+.++||||..+ +.+.+...+....+|++++|.+.+. ..+..+..++.++.... .|+++|+||
T Consensus 81 ~~~~~i~liDtpG~~~-------~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~~-----ip~ivvvNK 147 (224)
T cd04165 81 KSSKLVTFIDLAGHER-------YLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALALN-----IPVFVVVTK 147 (224)
T ss_pred eCCcEEEEEECCCcHH-------HHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHcC-----CCEEEEEEC
Confidence 4577899999999742 2333333332246899999966543 36777788888776643 789999999
Q ss_pred CCCC
Q 026593 162 AQLC 165 (236)
Q Consensus 162 ~D~~ 165 (236)
+|+.
T Consensus 148 ~D~~ 151 (224)
T cd04165 148 IDLA 151 (224)
T ss_pred cccc
Confidence 9985
No 219
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.31 E-value=1.4e-11 Score=114.13 Aligned_cols=114 Identities=10% Similarity=0.096 Sum_probs=73.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEe--ee--CCeeEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR--SK--GGFTLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
.+..|+++|++++|||||+++|.+..+.. ....+.+.....+.. .+ .+..+.||||||+.++ ......
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F-------~~mr~r 314 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF-------SSMRSR 314 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHHH-------HHHHHH
Confidence 56799999999999999999999876532 222222322222222 22 3578999999997432 122222
Q ss_pred HHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+ ..+|++++|++.+. .......+.+..+.. ...|+++++||+|+.
T Consensus 315 g~--~~aDiaILVVDA~d-Gv~~QT~E~I~~~k~-----~~iPiIVViNKiDl~ 360 (742)
T CHL00189 315 GA--NVTDIAILIIAADD-GVKPQTIEAINYIQA-----ANVPIIVAINKIDKA 360 (742)
T ss_pred HH--HHCCEEEEEEECcC-CCChhhHHHHHHHHh-----cCceEEEEEECCCcc
Confidence 22 47999999977643 233334444444432 227999999999985
No 220
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.30 E-value=2e-10 Score=93.47 Aligned_cols=136 Identities=22% Similarity=0.300 Sum_probs=76.3
Q ss_pred HHHHHHHHH-hcC----CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceE-------------EE------
Q 026593 23 LIELLSKLK-QEN----VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-------------MV------ 78 (236)
Q Consensus 23 ~~~~~~~~~-~~~----~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~-------------~~------ 78 (236)
+.+.+++++ ..+ .....++++|++|+||||++++++|..+...+.. ..+..+. ..
T Consensus 7 l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g-~~t~~p~~i~l~~~~~~~~~~~~~~~~~ 85 (240)
T smart00053 7 LVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLILQLINSSTEYAEFLHCKGKK 85 (240)
T ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCC-cccccceEEEccCCCCcceEEEecCCcc
Confidence 344445555 332 3456899999999999999999999752221100 0000000 00
Q ss_pred ------------------------------Eeee---CCeeEEEEeCCCCCCCC--CC----hHHHHHHHHHHHhcCCCc
Q 026593 79 ------------------------------SRSK---GGFTLNIIDTPGLVEAG--YV----NYQALELIKGFLLNKTID 119 (236)
Q Consensus 79 ------------------------------~~~~---~~~~~~liDTPG~~d~~--~~----~~~~~~~i~~~l~~~~~~ 119 (236)
.... .-.+++++||||+.... .. ...+.+.+..++. ...+
T Consensus 86 ~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~-~~~~ 164 (240)
T smart00053 86 FTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFIS-KEEC 164 (240)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHh-CccC
Confidence 0000 11368999999996431 11 1223333444443 2346
Q ss_pred EEEEEEeCCCCCCChHH-HHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 120 VLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 120 ~il~v~~~d~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.|++|.+... .+...+ .++.+.+... ..++++|+||+|..+
T Consensus 165 IIL~Vvda~~-d~~~~d~l~ia~~ld~~-----~~rti~ViTK~D~~~ 206 (240)
T smart00053 165 LILAVTPANV-DLANSDALKLAKEVDPQ-----GERTIGVITKLDLMD 206 (240)
T ss_pred eEEEEEECCC-CCCchhHHHHHHHHHHc-----CCcEEEEEECCCCCC
Confidence 8888855432 244444 4555555443 289999999999973
No 221
>PRK00049 elongation factor Tu; Reviewed
Probab=99.29 E-value=7.3e-11 Score=103.34 Aligned_cols=119 Identities=10% Similarity=0.080 Sum_probs=76.2
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCCCcc------cc---c------cCcCcccceEEEEeeeCCeeEEEEeCCCCC
Q 026593 32 QENVNTLTILVMGKGGVGKSSTVNSVIGERVV------TV---N------SFQSEALRPVMVSRSKGGFTLNIIDTPGLV 96 (236)
Q Consensus 32 ~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~------~~---~------~~~~~~~~~~~~~~~~~~~~~~liDTPG~~ 96 (236)
+..++.++|+++|+.++|||||+++|++.... .. . ...+.|..........++..+.++||||+.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 34467899999999999999999999973110 00 0 011222233333344567789999999973
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEE-EEEeCCCCC
Q 026593 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL-LVLTHAQLC 165 (236)
Q Consensus 97 d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i-vv~tk~D~~ 165 (236)
+....+...+ ..+|++++|.+... .....+.+++..+... + .|.+ +++||+|+.
T Consensus 87 -------~f~~~~~~~~--~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~ 141 (396)
T PRK00049 87 -------DYVKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKCDMV 141 (396)
T ss_pred -------HHHHHHHhhh--ccCCEEEEEEECCC-CCchHHHHHHHHHHHc-C----CCEEEEEEeecCCc
Confidence 2333333323 58999999966542 2556666666665543 2 5654 689999986
No 222
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.29 E-value=1e-10 Score=106.84 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=72.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccc--ccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTV--NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
+.|+++|++++|||||+++|+|...... ....+.|.........+++..+.+|||||.. .+...+...+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------~f~~~~~~g~-- 71 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------KFISNAIAGG-- 71 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------HHHHHHHhhh--
Confidence 4689999999999999999998642111 1112233333333456677889999999963 2222222222
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++.+.. ......+.+..+.. .+. +++++|+||+|+.
T Consensus 72 ~~aD~aILVVDa~~G-~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv 116 (581)
T TIGR00475 72 GGIDAALLVVDADEG-VMTQTGEHLAVLDL-LGI---PHTIVVITKADRV 116 (581)
T ss_pred ccCCEEEEEEECCCC-CcHHHHHHHHHHHH-cCC---CeEEEEEECCCCC
Confidence 589999999776532 33444555544432 231 3499999999996
No 223
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.29 E-value=5.6e-11 Score=96.14 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEee-eCCeeEEEEeCCCCCCCCCCh--HHHHHHHHHHHhc
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVN--YQALELIKGFLLN 115 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDTPG~~d~~~~~--~~~~~~i~~~l~~ 115 (236)
||+++|+.|+||||..+.+.+.-.+..-...+.|......... .+...+.+||.||+.+..... .+....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if------ 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIF------ 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHH------
Confidence 7999999999999999999976433322233444555544443 455699999999997654321 0111112
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++.+++||+++........-.++...+......+....+.+++.|+|+.
T Consensus 75 ~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l 124 (232)
T PF04670_consen 75 SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL 124 (232)
T ss_dssp CTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred hccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence 48999999977754344444344444444444334458899999999986
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.29 E-value=1.4e-10 Score=101.62 Aligned_cols=120 Identities=11% Similarity=0.102 Sum_probs=74.9
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCC------Cccc---c-c-----cCcCcccceEEEEeeeCCeeEEEEeCCCCC
Q 026593 32 QENVNTLTILVMGKGGVGKSSTVNSVIGE------RVVT---V-N-----SFQSEALRPVMVSRSKGGFTLNIIDTPGLV 96 (236)
Q Consensus 32 ~~~~~~~~IllvG~~g~GKSSlin~l~~~------~~~~---~-~-----~~~~~~~~~~~~~~~~~~~~~~liDTPG~~ 96 (236)
+..++.++|+++|+.++|||||+++|++. .... . . ...+.|...........+..+.+|||||+.
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 34567899999999999999999999843 1000 0 0 012233333333444566789999999985
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 97 d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++ ...+...+ ..+|++++|++.+. .......+.+..+... +. +++++++||+|+.
T Consensus 87 ~f-------~~~~~~~~--~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 87 DY-------VKNMITGA--AQMDGAILVVSATD-GPMPQTREHILLARQV-GV---PYIVVFLNKCDMV 141 (394)
T ss_pred HH-------HHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CEEEEEEEecccC
Confidence 32 22222222 47899999966543 2445555666655433 21 4456789999986
No 225
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.28 E-value=4.5e-11 Score=109.15 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc---------------cCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVN---------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY 103 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~ 103 (236)
+|+++|+.++|||||+++|+........ ...+.+.........|.+..+.+|||||+.|+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---- 78 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---- 78 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH----
Confidence 7999999999999999999853211100 011233344455677889999999999986543
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 104 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 104 ~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+..++ ..+|++++|++... ........++..+.+. ..|+++|+||+|+.
T Consensus 79 ---~ev~~~l--~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~-----~ip~IVviNKiD~~ 129 (594)
T TIGR01394 79 ---GEVERVL--GMVDGVLLLVDASE-GPMPQTRFVLKKALEL-----GLKPIVVINKIDRP 129 (594)
T ss_pred ---HHHHHHH--HhCCEEEEEEeCCC-CCcHHHHHHHHHHHHC-----CCCEEEEEECCCCC
Confidence 1222233 37899999966543 2344455565555542 27899999999984
No 226
>PRK10218 GTP-binding protein; Provisional
Probab=99.27 E-value=8.6e-11 Score=107.36 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=74.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccccc---------------CcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 101 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~ 101 (236)
--+|+++|+.++|||||+++|+......... ..+.+.........+++..+.+|||||..++..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~- 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG- 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH-
Confidence 3589999999999999999999642211110 011222333445567888999999999977642
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 102 ~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.....+ ..+|++++|++... .........+..+.+. ..|.++++||+|..
T Consensus 84 --~v~~~l------~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~-----gip~IVviNKiD~~ 133 (607)
T PRK10218 84 --EVERVM------SMVDSVLLVVDAFD-GPMPQTRFVTKKAFAY-----GLKPIVVINKVDRP 133 (607)
T ss_pred --HHHHHH------HhCCEEEEEEeccc-CccHHHHHHHHHHHHc-----CCCEEEEEECcCCC
Confidence 222222 48999999966542 2344445555544432 27889999999985
No 227
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.27 E-value=6.1e-11 Score=110.67 Aligned_cols=113 Identities=14% Similarity=0.114 Sum_probs=75.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccc-----ccc------------CcCcccceEEEEeeeCCeeEEEEeCCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVT-----VNS------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~ 100 (236)
.+|.++|+.++|||||+|+|+...... +.+ ..+.+.........+++..+.+|||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 599999999999999999997432111 110 122333344556678899999999999976432
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 101 ~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+....+ ..+|++++|++... .....+..++..+.+. ..|+++++||+|+.
T Consensus 91 ---~~~~~l------~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~ 140 (689)
T TIGR00484 91 ---EVERSL------RVLDGAVAVLDAVG-GVQPQSETVWRQANRY-----EVPRIAFVNKMDKT 140 (689)
T ss_pred ---HHHHHH------HHhCEEEEEEeCCC-CCChhHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 222222 37899999966532 2455555565555443 27899999999986
No 228
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.27 E-value=2.6e-11 Score=99.93 Aligned_cols=121 Identities=22% Similarity=0.334 Sum_probs=87.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCee-EEEEeCCCCCCCCCCh----HHHHHHHHHH
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT-LNIIDTPGLVEAGYVN----YQALELIKGF 112 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~liDTPG~~d~~~~~----~~~~~~i~~~ 112 (236)
..+.++|.|++|||||+|+|+..+. .+.+++.+|..+......+++.. +.+-|.||+-.....+ .+.++.+.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE-- 273 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE-- 273 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH--
Confidence 4788999999999999999999886 77888889989988888777764 9999999997765544 34555553
Q ss_pred HhcCCCcEEEEEEeCCCCCC-ChH-HHH-HHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRV-DDL-DRQ-IIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~-~~~-~~~-~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++.++||.++..... ++- +.+ +...+..+-..-..+|.++|.||+|+.
T Consensus 274 ----R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 274 ----RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred ----hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 7899999977765421 221 222 222222222222348999999999984
No 229
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.26 E-value=1.3e-10 Score=93.74 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=67.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc------------------------ccc------CcCcccceEEEEeeeCCeeEE
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVT------------------------VNS------FQSEALRPVMVSRSKGGFTLN 88 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~------------------------~~~------~~~~~~~~~~~~~~~~~~~~~ 88 (236)
+|+++|+.++|||||+.+|+...... ..+ ..+.+.........+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999987331100 000 111223333455667889999
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC------CChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 89 IIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 89 liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
+|||||+.++ ...+...+ ..+|++++|++..... ........+... ...+. +|+++++||+
T Consensus 81 liDtpG~~~~-------~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHRDF-------VPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGV---KQLIVAVNKM 147 (219)
T ss_pred EEECCChHHH-------HHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCC---CeEEEEEEcc
Confidence 9999997432 11122222 4799999996654311 111222322222 22222 6899999999
Q ss_pred CCC
Q 026593 163 QLC 165 (236)
Q Consensus 163 D~~ 165 (236)
|+.
T Consensus 148 Dl~ 150 (219)
T cd01883 148 DDV 150 (219)
T ss_pred ccc
Confidence 986
No 230
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.26 E-value=1e-10 Score=103.49 Aligned_cols=119 Identities=12% Similarity=0.137 Sum_probs=72.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccc------------------------cc------CcCcccceEEEEeeeC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTV------------------------NS------FQSEALRPVMVSRSKG 83 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~------------------------~~------~~~~~~~~~~~~~~~~ 83 (236)
.++.++|+++|+.++|||||+++|+....... .+ ..+.+.........++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45779999999999999999999985321100 00 1122333334455667
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCC--ChHHHHHHHHHHHhhCccccCcEEEEEeC
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV--DDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~--~~~~~~~l~~l~~~~~~~~~~~~ivv~tk 161 (236)
+..+.+|||||+.+ +...+...+ ..+|++++|++.+...+ .......+. +....+. .++++++||
T Consensus 84 ~~~i~iiDtpGh~~-------f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~---~~iIVviNK 150 (426)
T TIGR00483 84 KYEVTIVDCPGHRD-------FIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGI---NQLIVAINK 150 (426)
T ss_pred CeEEEEEECCCHHH-------HHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCC---CeEEEEEEC
Confidence 78999999999743 222222222 47999999977754322 111122222 2223332 689999999
Q ss_pred CCCC
Q 026593 162 AQLC 165 (236)
Q Consensus 162 ~D~~ 165 (236)
+|+.
T Consensus 151 ~Dl~ 154 (426)
T TIGR00483 151 MDSV 154 (426)
T ss_pred hhcc
Confidence 9996
No 231
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.26 E-value=9.3e-11 Score=100.68 Aligned_cols=129 Identities=13% Similarity=0.235 Sum_probs=88.6
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC----Ccc-----------ccccCcC---cccceEE---E--Eeee
Q 026593 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE----RVV-----------TVNSFQS---EALRPVM---V--SRSK 82 (236)
Q Consensus 26 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~----~~~-----------~~~~~~~---~~~~~~~---~--~~~~ 82 (236)
+.+++.++-...+.|.++|+.++|||||+|+|.+. +.. .+++.++ .|+.+.. . ....
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 44555556557899999999999999999999998 544 3444555 4555543 1 1111
Q ss_pred C---CeeEEEEeCCCCCCCCCChH----H----------------------HHHHHHHHHhcCCCcEEEEEEeCCC----
Q 026593 83 G---GFTLNIIDTPGLVEAGYVNY----Q----------------------ALELIKGFLLNKTIDVLLYADRLDA---- 129 (236)
Q Consensus 83 ~---~~~~~liDTPG~~d~~~~~~----~----------------------~~~~i~~~l~~~~~~~il~v~~~d~---- 129 (236)
. ..+++++||+|+.+...... . ..+.+. .+++..++|.. |+
T Consensus 86 ~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~-----dhstIgivVtT-Dgsi~d 159 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ-----EHSTIGVVVTT-DGTITD 159 (492)
T ss_pred cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH-----hcCcEEEEEEc-CCCccc
Confidence 1 24799999999987543221 1 122221 37888888841 33
Q ss_pred ---CCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 130 ---YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 130 ---~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
......+.+++..|++.- +|+++|+|+.|..
T Consensus 160 I~Re~y~~aEe~~i~eLk~~~-----kPfiivlN~~dp~ 193 (492)
T TIGR02836 160 IPREDYVEAEERVIEELKELN-----KPFIILLNSTHPY 193 (492)
T ss_pred cccccchHHHHHHHHHHHhcC-----CCEEEEEECcCCC
Confidence 346778899999999875 9999999999954
No 232
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.25 E-value=8e-11 Score=106.21 Aligned_cols=115 Identities=12% Similarity=0.154 Sum_probs=72.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC--ccc-------------cccCc------CcccceEEEEeeeCCeeEEEEeCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER--VVT-------------VNSFQ------SEALRPVMVSRSKGGFTLNIIDTPG 94 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~--~~~-------------~~~~~------~~~~~~~~~~~~~~~~~~~liDTPG 94 (236)
...+|+++|++++|||||+++|+... +.. +.++. +.+.........+.+..+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 55799999999999999999986321 111 11110 1111223345677889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 95 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 95 ~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+.++. .+..+.+ ..+|++++|++... .+......+++.... ...|+++++||+|+.
T Consensus 90 ~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~-----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 90 HEDFS---EDTYRTL------TAVDNCLMVIDAAK-GVETRTRKLMEVTRL-----RDTPIFTFMNKLDRD 145 (527)
T ss_pred hhhHH---HHHHHHH------HhCCEEEEEEECCC-CCCHHHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 95442 1222222 37999999966532 244444444443332 127999999999984
No 233
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.24 E-value=7e-11 Score=107.61 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=69.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcC-cccceE--EEEee----------------eCCeeEEEEeCCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-EALRPV--MVSRS----------------KGGFTLNIIDTPGLV 96 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-~~~~~~--~~~~~----------------~~~~~~~liDTPG~~ 96 (236)
.+..|+++|++++|||||+|+|.+..+.. ..++ .|.... ..... .....+.+|||||+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~--~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK--REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccc--ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 34579999999999999999999886432 1111 111100 00000 011238899999985
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 97 d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++.... ..+. ..+|++++|++++. .......+.+..+... ..|+++++||+|+.
T Consensus 81 ~f~~l~-------~~~~--~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 81 AFTNLR-------KRGG--ALADLAILIVDINE-GFKPQTQEALNILRMY-----KTPFVVAANKIDRI 134 (590)
T ss_pred hHHHHH-------HHHH--hhCCEEEEEEECCc-CCCHhHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 442211 1111 48999999977653 2444555555555432 27999999999986
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.23 E-value=1.3e-10 Score=103.89 Aligned_cols=119 Identities=17% Similarity=0.134 Sum_probs=73.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccc-----------C---------------------cCcccceEEEEe
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-----------F---------------------QSEALRPVMVSR 80 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~-----------~---------------------~~~~~~~~~~~~ 80 (236)
..++.++|+++|+.++|||||+++|+......... . .+.+........
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 35678999999999999999999998553211110 0 011122223334
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEe
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 160 (236)
.+++..+.||||||..+ +...+...+ ..+|++++|++.+. .....+.+.+..+ ...+. +++++++|
T Consensus 103 ~~~~~~i~~iDTPGh~~-------f~~~~~~~l--~~aD~allVVDa~~-G~~~qt~~~~~l~-~~lg~---~~iIvvvN 168 (474)
T PRK05124 103 STEKRKFIIADTPGHEQ-------YTRNMATGA--STCDLAILLIDARK-GVLDQTRRHSFIA-TLLGI---KHLVVAVN 168 (474)
T ss_pred ccCCcEEEEEECCCcHH-------HHHHHHHHH--hhCCEEEEEEECCC-CccccchHHHHHH-HHhCC---CceEEEEE
Confidence 56677899999999632 222222222 58999999966542 2333333333222 23332 68999999
Q ss_pred CCCCC
Q 026593 161 HAQLC 165 (236)
Q Consensus 161 k~D~~ 165 (236)
|+|+.
T Consensus 169 KiD~~ 173 (474)
T PRK05124 169 KMDLV 173 (474)
T ss_pred eeccc
Confidence 99986
No 235
>PRK12739 elongation factor G; Reviewed
Probab=99.22 E-value=9.5e-11 Score=109.39 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=76.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcc-----ccc------------cCcCcccceEEEEeeeCCeeEEEEeCCCCCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVV-----TVN------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~ 99 (236)
-.+|.++|+.++|||||+++|+..... .+. ...+.+.........+++..+.++||||+.++
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f- 86 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF- 86 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH-
Confidence 358999999999999999999743110 011 11223444445566788999999999998542
Q ss_pred CChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 100 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 100 ~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+...+ ..+|++++|++... ..+..+..++..+.+.. .|+++++||+|+.
T Consensus 87 ------~~e~~~al--~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~~-----~p~iv~iNK~D~~ 138 (691)
T PRK12739 87 ------TIEVERSL--RVLDGAVAVFDAVS-GVEPQSETVWRQADKYG-----VPRIVFVNKMDRI 138 (691)
T ss_pred ------HHHHHHHH--HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 12223333 37899999955432 25666666666655432 7889999999986
No 236
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=3.3e-11 Score=89.14 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=79.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTV-NSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
++++++|++|.|||.|+..+...++..- ++..+..-.......-....++.+|||.|+..+. +..+.+. .
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFR-------SVtRsYY--R 80 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFR-------SVTRSYY--R 80 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHH-------HHHHHHh--c
Confidence 7999999999999999999886654221 1111111111112211123478999999985443 2333333 4
Q ss_pred CCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHH
Q 026593 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV 174 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~ 174 (236)
++.+.++|+++.+..-..+...|+.-.+...+.+ ..+++++||.|+.+.++.++.+
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~VtflE 136 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLE 136 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHHH
Confidence 8889999988865332233456776666665543 6788999999997555555443
No 237
>PRK00007 elongation factor G; Reviewed
Probab=99.21 E-value=9.8e-11 Score=109.27 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=76.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcc--c---cc------------cCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVV--T---VN------------SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~ 100 (236)
.+|.++|+.++|||||+++|+..... . +. ...+.+.........+.+..+.++||||+.++.
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~- 89 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT- 89 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH-
Confidence 59999999999999999999732110 0 11 112233344455667889999999999985421
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 101 ~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++...+ ..+|++++|++... ..+..+...+..+.+.. .|.++++||+|+.
T Consensus 90 ------~ev~~al--~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~~-----~p~iv~vNK~D~~ 140 (693)
T PRK00007 90 ------IEVERSL--RVLDGAVAVFDAVG-GVEPQSETVWRQADKYK-----VPRIAFVNKMDRT 140 (693)
T ss_pred ------HHHHHHH--HHcCEEEEEEECCC-CcchhhHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence 1222223 37899999955432 36666777777666543 7889999999986
No 238
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.20 E-value=1.9e-10 Score=103.71 Aligned_cols=115 Identities=10% Similarity=0.135 Sum_probs=72.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCc--ccc-------------ccCc------CcccceEEEEeeeCCeeEEEEeCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERV--VTV-------------NSFQ------SEALRPVMVSRSKGGFTLNIIDTPG 94 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~--~~~-------------~~~~------~~~~~~~~~~~~~~~~~~~liDTPG 94 (236)
...+|+++|++++|||||+++|+.... ... +++. +.+.........+++..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456999999999999999999973211 000 1111 1111222345677889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 95 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 95 ~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..++.. +..+.+ ..+|++++|++... ........++...... ..|+++++||+|..
T Consensus 89 ~~df~~---~~~~~l------~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~-----~iPiiv~iNK~D~~ 144 (526)
T PRK00741 89 HEDFSE---DTYRTL------TAVDSALMVIDAAK-GVEPQTRKLMEVCRLR-----DTPIFTFINKLDRD 144 (526)
T ss_pred chhhHH---HHHHHH------HHCCEEEEEEecCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECCccc
Confidence 865431 222222 37899999965532 2444444444443332 28999999999975
No 239
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.20 E-value=1.5e-10 Score=101.64 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=70.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccc--------------------------c------CcCcccceEEEEeeeCCe
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVN--------------------------S------FQSEALRPVMVSRSKGGF 85 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~--------------------------~------~~~~~~~~~~~~~~~~~~ 85 (236)
++|+++|+.++|||||+++|+........ + ..+.+.........+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999844321110 0 001122223344556788
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 86 ~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+.++||||+.+ +...+...+ ..+|++++|++... ....+..+.+..+.. .+. +++++++||+|+.
T Consensus 81 ~~~liDtPGh~~-------f~~~~~~~~--~~aD~allVVda~~-G~~~qt~~~~~~~~~-~~~---~~iivviNK~D~~ 146 (406)
T TIGR02034 81 KFIVADTPGHEQ-------YTRNMATGA--STADLAVLLVDARK-GVLEQTRRHSYIASL-LGI---RHVVLAVNKMDLV 146 (406)
T ss_pred EEEEEeCCCHHH-------HHHHHHHHH--hhCCEEEEEEECCC-CCccccHHHHHHHHH-cCC---CcEEEEEEecccc
Confidence 999999999643 222222222 48999999966542 244444444433332 232 6799999999986
No 240
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.20 E-value=6.5e-11 Score=91.94 Aligned_cols=118 Identities=15% Similarity=0.220 Sum_probs=64.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee---CCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
.-.|+++|++|+|||+|...|.......+ .+.......... .+..+.+||+||...-. .+....+ .
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T-----~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr---~~~~~~~---~ 71 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT-----VTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR---SKLLDEL---K 71 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B--------SSEEEECCGSSTCGTCECEEEETT-HCCC---HHHHHHH---H
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe-----eccccCCceEEeecCCCCEEEEEECCCcHHHH---HHHHHhh---h
Confidence 34799999999999999999987643221 122222222222 45689999999985433 3333332 1
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHH----HHHhhCccccCcEEEEEeCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKA----VTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~----l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+.+.+|+|| +|+..+...-...-+. +...--.....|++|+.||.|+...
T Consensus 72 ~~~~~k~IIfv--vDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 72 YLSNAKGIIFV--VDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHGGEEEEEEE--EETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred chhhCCEEEEE--EeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 12578999999 5543332222222222 2222212344899999999999743
No 241
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.20 E-value=1.5e-10 Score=107.13 Aligned_cols=119 Identities=15% Similarity=0.108 Sum_probs=73.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCcccccc----------CcC----------------------cccceEEEEe
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS----------FQS----------------------EALRPVMVSR 80 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~----------~~~----------------------~~~~~~~~~~ 80 (236)
..++.++|+++|++++|||||+++|+......... ..+ .|........
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 44567999999999999999999999654322210 011 1112223344
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEe
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 160 (236)
.+++..+.|+||||..+ ....+...+ ..+|++++|++.+. .......+.+..+.. .+. +++++++|
T Consensus 100 ~~~~~~~~liDtPG~~~-------f~~~~~~~~--~~aD~~llVvda~~-g~~~~t~e~~~~~~~-~~~---~~iivvvN 165 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQ-------YTRNMVTGA--STADLAIILVDARK-GVLTQTRRHSFIASL-LGI---RHVVLAVN 165 (632)
T ss_pred ccCCceEEEEECCChHH-------HHHHHHHHH--HhCCEEEEEEECCC-CccccCHHHHHHHHH-hCC---CeEEEEEE
Confidence 56777899999999632 222222222 48999999966542 233333444333332 232 68899999
Q ss_pred CCCCC
Q 026593 161 HAQLC 165 (236)
Q Consensus 161 k~D~~ 165 (236)
|+|+.
T Consensus 166 K~D~~ 170 (632)
T PRK05506 166 KMDLV 170 (632)
T ss_pred ecccc
Confidence 99986
No 242
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.19 E-value=3.7e-11 Score=93.87 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=83.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC-Ce--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
...++++||..++|||+++-.++.... ...+.++...........+ |+ .+.+|||.|+.+.+... .
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~f--p~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlR---------p 71 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAF--PEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLR---------P 71 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcC--cccccCeEEccceEEEEecCCCEEEEeeeecCCCccccccc---------c
Confidence 357999999999999999888775542 2222222223444444453 54 67899999998875422 2
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++.+.+|+|++|+++++.. +...-..|+..++..++. .|+++|+||.|+.
T Consensus 72 lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 72 LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLR 122 (198)
T ss_pred cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhh
Confidence 3557999999999986533 555567788888888855 8999999999997
No 243
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.18 E-value=9.1e-10 Score=101.14 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=70.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc--cCcCcccceEEEEe-eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVN--SFQSEALRPVMVSR-SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
-|.++|+.++|||||+++|+|.+..... ...+.|........ ..++..+.+|||||+.+ +...+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-------fi~~m~~g~-- 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-------FLSNMLAGV-- 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-------HHHHHHHHh--
Confidence 5889999999999999999986421111 11122222211122 22566789999999832 223232222
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++.+. .......+.+..+.. .+. .++++|+||+|+.
T Consensus 73 ~~~D~~lLVVda~e-g~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv 117 (614)
T PRK10512 73 GGIDHALLVVACDD-GVMAQTREHLAILQL-TGN---PMLTVALTKADRV 117 (614)
T ss_pred hcCCEEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEECCccC
Confidence 58999999976653 255556666665543 232 4578999999986
No 244
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.18 E-value=1.2e-09 Score=83.60 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=76.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccC-----cC----cccceEEEEeeeCC-eeEEEEeCCCCCCCCCChHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSF-----QS----EALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQ 104 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~-~~~~liDTPG~~d~~~~~~~ 104 (236)
+...+|+++|+.++||||++.+++......+... .. .|.........+.+ ..+.++||||+..+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF------ 81 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF------ 81 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH------
Confidence 3568999999999999999999998764333111 11 11111122333444 78999999999443
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 105 ALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 105 ~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
+.+++.++ .++.+.+++ +|+.+ .+.....+++.+..... .|++|..||.|+.+.
T Consensus 82 --~fm~~~l~-~ga~gaivl--VDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a 136 (187)
T COG2229 82 --KFMWEILS-RGAVGAIVL--VDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA 136 (187)
T ss_pred --HHHHHHHh-CCcceEEEE--EecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC
Confidence 44444444 357777777 44444 33355666666665543 899999999999744
No 245
>PRK13351 elongation factor G; Reviewed
Probab=99.17 E-value=3.4e-10 Score=105.76 Aligned_cols=114 Identities=13% Similarity=0.146 Sum_probs=73.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccc-----------cccC------cCcccceEEEEeeeCCeeEEEEeCCCCCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVT-----------VNSF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~-----------~~~~------~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~ 99 (236)
..+|+++|+.|+|||||+++|+...... ..++ .+.+.........+.+..+.+|||||..++.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 4699999999999999999998532110 0000 1122233344566788999999999986532
Q ss_pred CChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 100 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 100 ~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
. .. ..++ ..+|++++|++... ..+......+..+... ..|+++++||+|+.
T Consensus 88 ~---~~----~~~l--~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~ 138 (687)
T PRK13351 88 G---EV----ERSL--RVLDGAVVVFDAVT-GVQPQTETVWRQADRY-----GIPRLIFINKMDRV 138 (687)
T ss_pred H---HH----HHHH--HhCCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECCCCC
Confidence 1 22 2222 37899999966543 2444444444444332 27999999999985
No 246
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.17 E-value=1.4e-10 Score=88.68 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=45.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~ 95 (236)
...+|+++|.+|+|||||+|+|.+.....+++.++.|....... -+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT---LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE---cCCCEEEEECcCC
Confidence 56899999999999999999999988777887777665433322 2345899999995
No 247
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.17 E-value=2.2e-10 Score=104.85 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccc--------cC------cCcccceEEEEeee---CC--eeEEEEeCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVN--------SF------QSEALRPVMVSRSK---GG--FTLNIIDTPGLVEA 98 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~--------~~------~~~~~~~~~~~~~~---~~--~~~~liDTPG~~d~ 98 (236)
-+|+++|+.++|||||+++|+........ +. .+.+.........| ++ ..+.+|||||+.++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 48999999999999999999865321110 00 12222222223333 22 57899999999764
Q ss_pred CCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 99 ~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.. . +..++ ..+|++++|++... ..+......+....+ . ..|+++|+||+|+.
T Consensus 84 ~~---~----v~~~l--~~aD~aILVvDat~-g~~~qt~~~~~~~~~---~--~ipiIiViNKiDl~ 135 (595)
T TIGR01393 84 SY---E----VSRSL--AACEGALLLVDAAQ-GIEAQTLANVYLALE---N--DLEIIPVINKIDLP 135 (595)
T ss_pred HH---H----HHHHH--HhCCEEEEEecCCC-CCCHhHHHHHHHHHH---c--CCCEEEEEECcCCC
Confidence 22 2 22222 37899999966542 233333332222222 1 27899999999985
No 248
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.17 E-value=2.6e-10 Score=104.17 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=68.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccce--EEEEee----------------eCCeeEEEEeCCCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP--VMVSRS----------------KGGFTLNIIDTPGLVE 97 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~--~~~~~~----------------~~~~~~~liDTPG~~d 97 (236)
.+..|.++|++++|||||+++|.+..+..... ...+... ...... ..-..+.+|||||+.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~-g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEA-GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCC-CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 45689999999999999999999875422111 1111100 000000 0001278999999865
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 98 ~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+.... .... ..+|++++|++.+. .+.......+..+... ..|+++++||+|+.
T Consensus 84 f~~~~-------~~~~--~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLR-------KRGG--ALADIAILVVDINE-GFQPQTIEAINILKRR-----KTPFVVAANKIDRI 136 (586)
T ss_pred HHHHH-------HHhH--hhCCEEEEEEECCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence 43211 1111 37999999977653 2445555555555432 27899999999985
No 249
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.15 E-value=8e-10 Score=98.07 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=72.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccc------------------------cccC------cCcccceEEEEeeeC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVT------------------------VNSF------QSEALRPVMVSRSKG 83 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~------------------------~~~~------~~~~~~~~~~~~~~~ 83 (236)
.++.++|+++|+.++|||||+.+|+...... ..+. .+.+.........++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 4577999999999999999999887421100 0000 112222234455677
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCC------ChHHHHHHHHHHHhhCccccCcEEE
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV------DDLDRQIIKAVTGTFGKQIWRKSLL 157 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~------~~~~~~~l~~l~~~~~~~~~~~~iv 157 (236)
+..+.|+||||..+ +...+...+ ..+|++++|.+.+..-+ ..+..+.+..+.. .|. +++++
T Consensus 84 ~~~i~lIDtPGh~~-------f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi---~~iiv 150 (446)
T PTZ00141 84 KYYFTIIDAPGHRD-------FIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGV---KQMIV 150 (446)
T ss_pred CeEEEEEECCChHH-------HHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCC---CeEEE
Confidence 88999999999743 233333333 48999999966543212 2333444444333 232 56889
Q ss_pred EEeCCCC
Q 026593 158 VLTHAQL 164 (236)
Q Consensus 158 v~tk~D~ 164 (236)
++||+|.
T Consensus 151 ~vNKmD~ 157 (446)
T PTZ00141 151 CINKMDD 157 (446)
T ss_pred EEEcccc
Confidence 9999995
No 250
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.14 E-value=3.1e-10 Score=95.25 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=51.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ 104 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~ 104 (236)
..++++++|.+|+||||++|+|++.....++..++.|...+... -+..+.++||||+......+++
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK---LGKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE---eCCcEEEEECCCcCCCCCCcHH
Confidence 56899999999999999999999998777777777765554322 2346899999999877655544
No 251
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.14 E-value=6.6e-10 Score=104.14 Aligned_cols=124 Identities=14% Similarity=0.180 Sum_probs=74.3
Q ss_pred HHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccc---------cccCc------CcccceE----EEEeeeCCeeE
Q 026593 27 LSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT---------VNSFQ------SEALRPV----MVSRSKGGFTL 87 (236)
Q Consensus 27 ~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~---------~~~~~------~~~~~~~----~~~~~~~~~~~ 87 (236)
+.++......-.+|+++|+.++|||||+++|+...... ..++. +.+.... .....+.+..+
T Consensus 9 ~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i 88 (720)
T TIGR00490 9 IKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLI 88 (720)
T ss_pred HHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEE
Confidence 33343333345799999999999999999987431100 00111 1111111 12245567789
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 88 NIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 88 ~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+|||||+.++. .+....+ ..+|++++|++... .........++.+.+. ..|.++++||+|..
T Consensus 89 ~liDTPG~~~f~---~~~~~al------~~aD~~llVvda~~-g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~ 151 (720)
T TIGR00490 89 NLIDTPGHVDFG---GDVTRAM------RAVDGAIVVVCAVE-GVMPQTETVLRQALKE-----NVKPVLFINKVDRL 151 (720)
T ss_pred EEEeCCCccccH---HHHHHHH------HhcCEEEEEEecCC-CCCccHHHHHHHHHHc-----CCCEEEEEEChhcc
Confidence 999999997753 2233333 38999999966532 2334444444443332 16778999999985
No 252
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.14 E-value=1.5e-09 Score=87.94 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=69.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCc-cccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
.++..|+++|.+|+|||||+|.+++... .......+ + .......+..+.++||||.. ......+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~----i~i~~~~~~~i~~vDtPg~~------~~~l~~a---- 101 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P----ITVVTGKKRRLTFIECPNDI------NAMIDIA---- 101 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c----EEEEecCCceEEEEeCCchH------HHHHHHH----
Confidence 4668899999999999999999987621 11111111 1 11122367789999999842 2222222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCc-EEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivv~tk~D~~ 165 (236)
..+|+++++.+... .+...+..++..+... + .| +++|+||+|+.
T Consensus 102 --k~aDvVllviDa~~-~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~ 146 (225)
T cd01882 102 --KVADLVLLLIDASF-GFEMETFEFLNILQVH-G----FPRVMGVLTHLDLF 146 (225)
T ss_pred --HhcCEEEEEEecCc-CCCHHHHHHHHHHHHc-C----CCeEEEEEeccccC
Confidence 37899999955432 2555566666666543 2 45 55699999986
No 253
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.13 E-value=4.2e-11 Score=89.07 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=82.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcC--cccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS--EALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.|+++++|..-+|||||+-++...++.... ... ..............-++.||||.|+..+.....-+.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kH-lsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYY-------- 83 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKH-LSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYY-------- 83 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhh-HHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEE--------
Confidence 589999999999999999888766532211 100 001111222222334789999999976654433222
Q ss_pred cCCCcEEEEEEeCCC-CCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCc
Q 026593 115 NKTIDVLLYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN 171 (236)
Q Consensus 115 ~~~~~~il~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~ 171 (236)
.+.++.++|+++.. .+|.. -+.|+..|+...|.. .-+++|+||+|+...+..+
T Consensus 84 -RgSnGalLVyDITDrdSFqK-VKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~Vt 137 (218)
T KOG0088|consen 84 -RGSNGALLVYDITDRDSFQK-VKNWVLELRTMLGNE--IELLIVGNKIDLEEERQVT 137 (218)
T ss_pred -eCCCceEEEEeccchHHHHH-HHHHHHHHHHHhCCe--eEEEEecCcccHHHhhhhh
Confidence 48999999999844 33543 478999999999976 7899999999996433333
No 254
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.13 E-value=3e-10 Score=86.76 Aligned_cols=85 Identities=22% Similarity=0.324 Sum_probs=55.6
Q ss_pred cccccccCchhHHHHHHHHHHHHHhc--CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe
Q 026593 8 EWAGFQQFPSATQNKLIELLSKLKQE--NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF 85 (236)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
.+.|+++|.+...+.+.+..+..... .....+++++|.+|+||||++|+|++.....++..+++|........ +.
T Consensus 69 ~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~ 145 (155)
T cd01849 69 NGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DN 145 (155)
T ss_pred CCcChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cC
Confidence 34456655554443332222222211 23568999999999999999999999876566666666655544332 35
Q ss_pred eEEEEeCCCC
Q 026593 86 TLNIIDTPGL 95 (236)
Q Consensus 86 ~~~liDTPG~ 95 (236)
.+.++||||+
T Consensus 146 ~~~liDtPG~ 155 (155)
T cd01849 146 KIKLLDTPGI 155 (155)
T ss_pred CEEEEECCCC
Confidence 6899999996
No 255
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.12 E-value=3.3e-10 Score=87.97 Aligned_cols=57 Identities=28% Similarity=0.384 Sum_probs=46.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~ 95 (236)
.+++++++|.+|+|||||+|+|++.....++..++.|...+.... +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 458999999999999999999999988788888877765443332 346899999996
No 256
>PTZ00416 elongation factor 2; Provisional
Probab=99.11 E-value=1.1e-09 Score=104.16 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=72.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcC---------------cccceEEEEeeeC----------CeeEEEE
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS---------------EALRPVMVSRSKG----------GFTLNII 90 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~----------~~~~~li 90 (236)
.-.+|.++|+.++|||||+++|+...........+ .+.........+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 44699999999999999999998643211111100 0111111122232 5679999
Q ss_pred eCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 91 DTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 91 DTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
||||+.++ ...+...+ ..+|++++|++... .+......+++.+.+.. .|+++++||+|..
T Consensus 98 DtPG~~~f-------~~~~~~al--~~~D~ailVvda~~-g~~~~t~~~~~~~~~~~-----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDF-------SSEVTAAL--RVTDGALVVVDCVE-GVCVQTETVLRQALQER-----IRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhH-------HHHHHHHH--hcCCeEEEEEECCC-CcCccHHHHHHHHHHcC-----CCEEEEEEChhhh
Confidence 99999653 22222233 48999999955432 25555666666665542 7999999999985
No 257
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.10 E-value=6.3e-10 Score=92.92 Aligned_cols=64 Identities=22% Similarity=0.405 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 102 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~ 102 (236)
..++++++|.+|+|||||+|+|++.....++..++.|...+.... +..+.++||||+......+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKFED 180 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCCCc
Confidence 468999999999999999999999887777777777665543332 3468999999996655433
No 258
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.10 E-value=2.6e-10 Score=85.32 Aligned_cols=129 Identities=14% Similarity=0.086 Sum_probs=82.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceE---EEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV---MVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
.++++++|++-+|||||+..++..+.+..++ |.+...-. .....-...++.+|||.|+..+......+.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsd-ptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyy------- 79 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYY------- 79 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCC-CccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHh-------
Confidence 4799999999999999999999887654432 11111110 111122335789999999965544333222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHH
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVY 175 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~ 175 (236)
.+.-++++|+++.+..-.+.-..|++.-....+.....-+.+|++|+|+...+..+.++.
T Consensus 80 --rnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEa 139 (213)
T KOG0091|consen 80 --RNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEA 139 (213)
T ss_pred --hcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHH
Confidence 367788999888664333334567666666655344355788999999975555555544
No 259
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.09 E-value=8.5e-10 Score=101.14 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=67.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccc--------cc------CcCcccceEEEEeeeC-----CeeEEEEeCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTV--------NS------FQSEALRPVMVSRSKG-----GFTLNIIDTPGLVEA 98 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~--------~~------~~~~~~~~~~~~~~~~-----~~~~~liDTPG~~d~ 98 (236)
-+++++|+.++|||||+.+|+....... .+ ..+.+.........|. +..+.+|||||+.++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 4899999999999999999985421110 00 0112222222333332 457899999999764
Q ss_pred CCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 99 ~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.. + +..++ ..+|++++|++... ..+......+..... ...|+++|+||+|+.
T Consensus 88 ~~---~----v~~sl--~~aD~aILVVDas~-gv~~qt~~~~~~~~~-----~~lpiIvViNKiDl~ 139 (600)
T PRK05433 88 SY---E----VSRSL--AACEGALLVVDASQ-GVEAQTLANVYLALE-----NDLEIIPVLNKIDLP 139 (600)
T ss_pred HH---H----HHHHH--HHCCEEEEEEECCC-CCCHHHHHHHHHHHH-----CCCCEEEEEECCCCC
Confidence 31 2 22222 37899999966542 233333333322222 127899999999985
No 260
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.08 E-value=2.6e-09 Score=93.96 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=68.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccc-cC-cCcccceE----------------EEEe----------eeCCee
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVN-SF-QSEALRPV----------------MVSR----------SKGGFT 86 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~-~~-~~~~~~~~----------------~~~~----------~~~~~~ 86 (236)
++.++|+++|..++|||||+++|++....... .. .+.+.... .+.. ...+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 36789999999999999999999875311100 00 00000000 0000 012467
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 87 LNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 87 ~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+.+|||||..+ +...+...+ ..+|++++|++.+.........+.+..+ ...+. .++++++||+|+.
T Consensus 82 i~liDtPGh~~-------f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 82 VSFVDAPGHET-------LMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEEECCCHHH-------HHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcCC---CeEEEEEEccccC
Confidence 99999999743 222232222 3789999997665321133334444433 23332 6799999999986
No 261
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.08 E-value=1.5e-09 Score=95.47 Aligned_cols=122 Identities=12% Similarity=0.100 Sum_probs=69.4
Q ss_pred HhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccc-c-CcCcccceE----------------EEEee--eC-------
Q 026593 31 KQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVN-S-FQSEALRPV----------------MVSRS--KG------- 83 (236)
Q Consensus 31 ~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~-~-~~~~~~~~~----------------~~~~~--~~------- 83 (236)
.++.++.++|+++|+.++|||||+.+|++....... . ..+.|.... .+... ..
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 345668899999999999999999999764210000 0 001111100 00000 00
Q ss_pred -CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 84 -GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 84 -~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
...+.+|||||..+ ....+...+ ..+|++++|++.............+..+.. .+. .++++|+||+
T Consensus 83 ~~~~i~liDtPG~~~-------f~~~~~~~~--~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~ 149 (411)
T PRK04000 83 LLRRVSFVDAPGHET-------LMATMLSGA--ALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKI 149 (411)
T ss_pred cccEEEEEECCCHHH-------HHHHHHHHH--hhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEee
Confidence 25789999999632 222221111 468999999666532113333444444432 221 5799999999
Q ss_pred CCC
Q 026593 163 QLC 165 (236)
Q Consensus 163 D~~ 165 (236)
|+.
T Consensus 150 Dl~ 152 (411)
T PRK04000 150 DLV 152 (411)
T ss_pred ccc
Confidence 996
No 262
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.08 E-value=1.7e-09 Score=90.32 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=85.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEee-eCCeeEEEEeCCCCCCCCC----ChHHHHHHHHHHH
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGY----VNYQALELIKGFL 113 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDTPG~~d~~~----~~~~~~~~i~~~l 113 (236)
.|.++|-|++|||||+++++..+. .+.+++.+|..+...... ..+..+++-|.||+-+... .-.+.++.+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE--- 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE--- 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH---
Confidence 577999999999999999999885 667788888888766554 4566799999999976543 3356666664
Q ss_pred hcCCCcEEEEEEeCCCCC-CC-hHHH-HHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VD-DLDR-QIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~-~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+.+++.|+++.... .. ..+. .+...|.++-..-..+|.++|+||+|..
T Consensus 237 ---Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 237 ---RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred ---hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 567899997765332 11 2233 3444455443333448999999999954
No 263
>PTZ00258 GTP-binding protein; Provisional
Probab=99.07 E-value=1.1e-09 Score=94.79 Aligned_cols=89 Identities=25% Similarity=0.307 Sum_probs=65.3
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-----------------eeEEEEeCCC
Q 026593 32 QENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPG 94 (236)
Q Consensus 32 ~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDTPG 94 (236)
.+....++|.++|.|++|||||+|+|++... .+++++.+|..+......+.+ ..+.++||||
T Consensus 16 ~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 16 GRPGNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred ccCCCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 3334678999999999999999999998875 677788888777666554432 2489999999
Q ss_pred CCCCCCChH----HHHHHHHHHHhcCCCcEEEEEEeC
Q 026593 95 LVEAGYVNY----QALELIKGFLLNKTIDVLLYADRL 127 (236)
Q Consensus 95 ~~d~~~~~~----~~~~~i~~~l~~~~~~~il~v~~~ 127 (236)
+........ +.+..+ ..+|++++|++.
T Consensus 95 Lv~ga~~g~gLg~~fL~~I------r~aD~il~VVd~ 125 (390)
T PTZ00258 95 LVKGASEGEGLGNAFLSHI------RAVDGIYHVVRA 125 (390)
T ss_pred cCcCCcchhHHHHHHHHHH------HHCCEEEEEEeC
Confidence 975443222 233333 489999999665
No 264
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.06 E-value=6.5e-10 Score=92.16 Aligned_cols=111 Identities=22% Similarity=0.331 Sum_probs=86.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhc-----CC---------CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceE
Q 026593 11 GFQQFPSATQNKLIELLSKLKQE-----NV---------NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV 76 (236)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~~-----~~---------~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~ 76 (236)
|.+.++.+.+..++++.+++... +. ..-+++++|.|++|||||+|.|++.+. .+.+++.+|..+.
T Consensus 23 aTe~hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~V 101 (365)
T COG1163 23 ATEHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPV 101 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccc
Confidence 67777777888888887777752 11 125899999999999999999999984 5677888888888
Q ss_pred EEEeeeCCeeEEEEeCCCCCCCCCCh----HHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026593 77 MVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKTIDVLLYADRLD 128 (236)
Q Consensus 77 ~~~~~~~~~~~~liDTPG~~d~~~~~----~~~~~~i~~~l~~~~~~~il~v~~~d 128 (236)
.....|+|-.+.++|+||+....... .+++..+ ..+|+|++|.++.
T Consensus 102 PG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~------R~ADlIiiVld~~ 151 (365)
T COG1163 102 PGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA------RNADLIIIVLDVF 151 (365)
T ss_pred cceEeecCceEEEEcCcccccCcccCCCCcceeeeee------ccCCEEEEEEecC
Confidence 88889999999999999987654333 2344444 4899999995543
No 265
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.05 E-value=1e-09 Score=91.05 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=59.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe-----------------eEEEEeCCCCCCCCCCh
Q 026593 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-----------------TLNIIDTPGLVEAGYVN 102 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~liDTPG~~d~~~~~ 102 (236)
|.++|.|++|||||.|+|++.+. .+++++.+|..+......+.+. .+.++||||+.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 57899999999999999999987 6777788777766555444432 48999999997654332
Q ss_pred HHHHHHHHHHHhc-CCCcEEEEEEeC
Q 026593 103 YQALELIKGFLLN-KTIDVLLYADRL 127 (236)
Q Consensus 103 ~~~~~~i~~~l~~-~~~~~il~v~~~ 127 (236)
..... +++.. ..+|++++|++.
T Consensus 80 ~glg~---~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 80 EGLGN---KFLSHIREVDAIAHVVRC 102 (274)
T ss_pred hHHHH---HHHHHHHhCCEEEEEEeC
Confidence 22111 22221 489999999664
No 266
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.05 E-value=1.8e-09 Score=92.51 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=61.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-----------------eeEEEEeCCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAGY 100 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDTPG~~d~~~ 100 (236)
++|.++|.|++|||||.|+|++.. ..+++++.+|..+......+.+ ..+.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 689999999999999999999988 4677788877776654443333 2589999999976443
Q ss_pred ChHHHHHHHHHHHhc-CCCcEEEEEEeC
Q 026593 101 VNYQALELIKGFLLN-KTIDVLLYADRL 127 (236)
Q Consensus 101 ~~~~~~~~i~~~l~~-~~~~~il~v~~~ 127 (236)
...... .+++.. ..+|++++|++.
T Consensus 82 ~g~glg---~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 82 KGEGLG---NQFLANIREVDAIVHVVRC 106 (364)
T ss_pred hHHHHH---HHHHHHHHhCCEEEEEEeC
Confidence 322211 122211 489999999665
No 267
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.03 E-value=3.5e-11 Score=87.06 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=76.2
Q ss_pred EEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 41 LVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 41 llvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
+++|.++.|||.|+-++-...+....-+..+...-.......++ .++.+|||.|+..+....+.+. ..+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayy---------rda 71 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYY---------RDA 71 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhh---------ccc
Confidence 47899999999987554433221111111112222222233333 4789999999977765554443 389
Q ss_pred cEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCC
Q 026593 119 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (236)
Q Consensus 119 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 169 (236)
|++++++++.+....+.-..|+..|.++.... ..+++++||+|+.+.+.
T Consensus 72 ~allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~er~ 120 (192)
T KOG0083|consen 72 DALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHERA 120 (192)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchhhc
Confidence 99999999865333355678999999886544 77899999999975433
No 268
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.02 E-value=1.1e-08 Score=90.81 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=72.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccc------------------------ccc------CcCcccceEEEEeeeC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVT------------------------VNS------FQSEALRPVMVSRSKG 83 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~------------------------~~~------~~~~~~~~~~~~~~~~ 83 (236)
.++.++|+++|+.++|||||+-+|+...... ..+ ..+.+.........+.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 4577999999999999999998887321100 000 0112222233445667
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCC------hHHHHHHHHHHHhhCccccCcEEE
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVD------DLDRQIIKAVTGTFGKQIWRKSLL 157 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~------~~~~~~l~~l~~~~~~~~~~~~iv 157 (236)
++.+.++||||..+ +...+...+ ..+|+.++|++.+...+. ....+.+.. ....+. +++++
T Consensus 84 ~~~i~liDtPGh~d-------f~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~-~~~~gi---~~iIV 150 (447)
T PLN00043 84 KYYCTVIDAPGHRD-------FIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALL-AFTLGV---KQMIC 150 (447)
T ss_pred CEEEEEEECCCHHH-------HHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHH-HHHcCC---CcEEE
Confidence 88999999999743 344443333 489999999776532232 222232222 222232 57899
Q ss_pred EEeCCCCC
Q 026593 158 VLTHAQLC 165 (236)
Q Consensus 158 v~tk~D~~ 165 (236)
++||+|+.
T Consensus 151 ~vNKmD~~ 158 (447)
T PLN00043 151 CCNKMDAT 158 (447)
T ss_pred EEEcccCC
Confidence 99999975
No 269
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.01 E-value=8.1e-10 Score=87.17 Aligned_cols=70 Identities=24% Similarity=0.413 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCc--------cccccCcCcccceEEEEeeeCCeeEEEEeCCC
Q 026593 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERV--------VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPG 94 (236)
Q Consensus 23 ~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG 94 (236)
+.++++.+.+......+++++|.+|+|||||+|+|++... ..++..+++|........ + ..+.+|||||
T Consensus 113 i~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~~~DtPG 189 (190)
T cd01855 113 VEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL--G-NGKKLYDTPG 189 (190)
T ss_pred HHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec--C-CCCEEEeCcC
Confidence 3444444443333557999999999999999999998643 234445555544444443 2 2579999999
Q ss_pred C
Q 026593 95 L 95 (236)
Q Consensus 95 ~ 95 (236)
+
T Consensus 190 ~ 190 (190)
T cd01855 190 I 190 (190)
T ss_pred C
Confidence 6
No 270
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.99 E-value=6.8e-09 Score=98.84 Aligned_cols=117 Identities=17% Similarity=0.242 Sum_probs=72.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCc---------------CcccceEEEEeee----------------
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ---------------SEALRPVMVSRSK---------------- 82 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~---------------- 82 (236)
...-.+|+++|+.++|||||+.+|+........... +.+.........+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 335579999999999999999999854321111100 0111111112222
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
.+..+.++||||..|+ ...+...+ ..+|+.++|.+... .........++.+.+.. .|+++++||+
T Consensus 96 ~~~~inliDtPGh~dF-------~~e~~~al--~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~~-----~p~i~~iNK~ 160 (843)
T PLN00116 96 NEYLINLIDSPGHVDF-------SSEVTAAL--RITDGALVVVDCIE-GVCVQTETVLRQALGER-----IRPVLTVNKM 160 (843)
T ss_pred CceEEEEECCCCHHHH-------HHHHHHHH--hhcCEEEEEEECCC-CCcccHHHHHHHHHHCC-----CCEEEEEECC
Confidence 2567899999998554 22222223 47899999955432 25555556666555442 8999999999
Q ss_pred CCC
Q 026593 163 QLC 165 (236)
Q Consensus 163 D~~ 165 (236)
|..
T Consensus 161 D~~ 163 (843)
T PLN00116 161 DRC 163 (843)
T ss_pred ccc
Confidence 985
No 271
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.99 E-value=1.1e-08 Score=96.16 Aligned_cols=115 Identities=16% Similarity=0.233 Sum_probs=69.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccc---------cCcC------cccceEEEEeee----CCeeEEEEeCCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVN---------SFQS------EALRPVMVSRSK----GGFTLNIIDTPGLV 96 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~---------~~~~------~~~~~~~~~~~~----~~~~~~liDTPG~~ 96 (236)
.-.+|+++|+.++|||||+.+|+........ ++.. .+.........| .+..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4468999999999999999999854321111 0000 111111111222 35678999999997
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 97 d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++. .+.. ..+ ..+|++++|.+... .........+....+. + .|.++++||+|..
T Consensus 99 df~---~~~~----~~l--~~~D~avlVvda~~-g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFG---GDVT----RAM--RAVDGAIVVVDAVE-GVMPQTETVLRQALRE-R----VKPVLFINKVDRL 152 (731)
T ss_pred ChH---HHHH----HHH--HhcCEEEEEEECCC-CCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence 752 2222 223 37899999955432 2444455555544332 2 5779999999975
No 272
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.98 E-value=3.2e-09 Score=78.19 Aligned_cols=116 Identities=13% Similarity=0.129 Sum_probs=73.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
..+.+.++|-..+||||++|.+...+... ....+........+.+...+.+||.||+..+....+.+ .
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~e---dmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWery---c------ 86 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY---C------ 86 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchh---hhcccccceeEEeccCceEEEEEecCCCccHHHHHHHH---h------
Confidence 55799999999999999999987654321 11122233344455566789999999996554332221 1
Q ss_pred CCCcEEEEEEeC-CCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRL-DAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++++|+||.+. |...++....++-..+.+ .. -...|+.+++||.|+-
T Consensus 87 R~v~aivY~VDaad~~k~~~sr~EL~~LL~k-~~-l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 87 RGVSAIVYVVDAADPDKLEASRSELHDLLDK-PS-LTGIPLLVLGNKIDLP 135 (186)
T ss_pred hcCcEEEEEeecCCcccchhhHHHHHHHhcc-hh-hcCCcEEEecccccCc
Confidence 489999999554 322344443333333332 21 1238999999999984
No 273
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.98 E-value=2.2e-09 Score=83.27 Aligned_cols=57 Identities=26% Similarity=0.406 Sum_probs=44.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~ 95 (236)
..++++++|.+|+|||||+|++++.....++..+++|......... ..+.++||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4479999999999999999999998765666666665554444332 56899999997
No 274
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.97 E-value=4.3e-09 Score=89.62 Aligned_cols=89 Identities=20% Similarity=0.361 Sum_probs=64.7
Q ss_pred ccccCchhHHHHHHHHHHHHHhcCC--CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEE
Q 026593 11 GFQQFPSATQNKLIELLSKLKQENV--NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLN 88 (236)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (236)
+...+......-..+.++.+...+. ...+++++|-|++||||+||+|.|.....++..|+.|...+..... ..+.
T Consensus 104 ~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~ 180 (322)
T COG1161 104 GGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIY 180 (322)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeE
Confidence 4444444444444466777776653 4489999999999999999999999988888888776555444432 3378
Q ss_pred EEeCCCCCCCCCCh
Q 026593 89 IIDTPGLVEAGYVN 102 (236)
Q Consensus 89 liDTPG~~d~~~~~ 102 (236)
++||||+.-.....
T Consensus 181 LlDtPGii~~~~~~ 194 (322)
T COG1161 181 LLDTPGIIPPKFDD 194 (322)
T ss_pred EecCCCcCCCCccc
Confidence 99999997666544
No 275
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.97 E-value=5.3e-08 Score=78.87 Aligned_cols=122 Identities=18% Similarity=0.082 Sum_probs=73.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC--CccccccCcCcccceEEEEeee---CCeeEEEEeCCCCCCCCCCh---HHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE--RVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVN---YQALE 107 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~liDTPG~~d~~~~~---~~~~~ 107 (236)
+-..|.++|++++|||+|+|.|+|. .........++|.....+.... .+..++++||||+.+..... +..+-
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4467899999999999999999998 4333334445555555554444 35789999999998876533 11111
Q ss_pred HHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHh-----------hCccccCcEEEEEeCCCC
Q 026593 108 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT-----------FGKQIWRKSLLVLTHAQL 164 (236)
Q Consensus 108 ~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~-----------~~~~~~~~~ivv~tk~D~ 164 (236)
.+. .--+++++|. ... .....+...+..+.+. ........+++|+--+++
T Consensus 86 ~l~----~llss~~i~n--~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~ 146 (224)
T cd01851 86 ALA----TLLSSVLIYN--SWE-TILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL 146 (224)
T ss_pred HHH----HHHhCEEEEe--ccC-cccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence 111 1137888888 443 2333344444444331 123344666777766654
No 276
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.1e-08 Score=91.92 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCccc-----------ceE----------------
Q 026593 24 IELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-----------RPV---------------- 76 (236)
Q Consensus 24 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~-----------~~~---------------- 76 (236)
..+.+.+.+ ...+|++.|.+++||||++|+++-.++.+.+- ..+|. .+.
T Consensus 99 ~~i~~~l~r---~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~-gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~ 174 (749)
T KOG0448|consen 99 DAIDEVLAR---RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGI-GHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTIN 174 (749)
T ss_pred HHHHHHHhh---cccEEEEeCCCCCcHHHHHHHHHHHhhCcccc-cccceeeeeecccCCcceeeccCCCcccccHHHHh
Confidence 334455545 55699999999999999999999654322110 00000 000
Q ss_pred ----------------EEEeeeC-------CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCC
Q 026593 77 ----------------MVSRSKG-------GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVD 133 (236)
Q Consensus 77 ----------------~~~~~~~-------~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~ 133 (236)
.....+. ..++.++|.||++-....+..+.+ .| -.+|+++||....+ .++
T Consensus 175 ~~~haL~~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~---~c---ldaDVfVlV~NaEn-tlt 247 (749)
T KOG0448|consen 175 QLAHALKPDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDS---FC---LDADVFVLVVNAEN-TLT 247 (749)
T ss_pred HHHHhcCcccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHH---Hh---hcCCeEEEEecCcc-HhH
Confidence 0001111 126899999999654444433322 23 38999999944432 488
Q ss_pred hHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 134 DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 134 ~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+++++....+. .+++.|+.||||....
T Consensus 248 ~sek~Ff~~vs~~-----KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 248 LSEKQFFHKVSEE-----KPNIFILNNKWDASAS 276 (749)
T ss_pred HHHHHHHHHhhcc-----CCcEEEEechhhhhcc
Confidence 8889988877765 2789999999998633
No 277
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.94 E-value=2.9e-10 Score=92.70 Aligned_cols=78 Identities=17% Similarity=0.094 Sum_probs=35.4
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhh-CccccCcEEEEEeCCCC
Q 026593 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTF-GKQIWRKSLLVLTHAQL 164 (236)
Q Consensus 86 ~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~-~~~~~~~~ivv~tk~D~ 164 (236)
.+.++||||+.+.....+ ....+-+.+.....-+++++ +|...++.....+-..+.... --+...|.+.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~-~~~~i~~~L~~~~~~~~v~L--vD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSD-SGRKIVERLQKNGRLVVVFL--VDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSH-HHHHHHHTSSS----EEEEE--E-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEech-hHHHHHHHHhhhcceEEEEE--EecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCc
Confidence 699999999966543333 23333344433344566666 565455432222211111110 01123899999999999
Q ss_pred CC
Q 026593 165 CP 166 (236)
Q Consensus 165 ~~ 166 (236)
.+
T Consensus 169 ~~ 170 (238)
T PF03029_consen 169 LS 170 (238)
T ss_dssp S-
T ss_pred cc
Confidence 74
No 278
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.94 E-value=2.4e-09 Score=80.47 Aligned_cols=55 Identities=33% Similarity=0.475 Sum_probs=41.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV 96 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~ 96 (236)
+++++|.+|+|||||+|++++.....++..++.+...... ..++ .+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTI--FLTP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEE--EeCC-CEEEEECCCcC
Confidence 8999999999999999999998866666555554443322 2232 68999999985
No 279
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.94 E-value=4.7e-09 Score=89.05 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=56.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEee---------------------e---CCeeEEEEeCCCC
Q 026593 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS---------------------K---GGFTLNIIDTPGL 95 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~~~~liDTPG~ 95 (236)
|+++|.+++|||||+|+|++... .+.+++.+|..+...... . ....+.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 57899999999999999999874 556666666555433221 1 2246899999999
Q ss_pred CCCCCC----hHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026593 96 VEAGYV----NYQALELIKGFLLNKTIDVLLYADRLD 128 (236)
Q Consensus 96 ~d~~~~----~~~~~~~i~~~l~~~~~~~il~v~~~d 128 (236)
...... ...++..+ ..+|++++|+++.
T Consensus 80 v~ga~~~~glg~~fL~~i------r~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDL------RDADALIHVVDAS 110 (318)
T ss_pred CCCccchhhHHHHHHHHH------HHCCEEEEEEeCC
Confidence 543221 12333334 3899999997774
No 280
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.91 E-value=7.1e-10 Score=84.50 Aligned_cols=73 Identities=29% Similarity=0.346 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcC-------cccceEEEEeeeCCeeEEEEeCC
Q 026593 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTP 93 (236)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~liDTP 93 (236)
+.+.++.+.++. -.++++|++|+|||||+|+|++.....++.+.. +|+....... .....+||||
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l---~~g~~iIDTP 95 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL---PDGGYIIDTP 95 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE---TTSEEEECSH
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec---CCCcEEEECC
Confidence 444455554533 388999999999999999999985444433222 2222222232 2245899999
Q ss_pred CCCCCCCC
Q 026593 94 GLVEAGYV 101 (236)
Q Consensus 94 G~~d~~~~ 101 (236)
|+.+....
T Consensus 96 Gf~~~~l~ 103 (161)
T PF03193_consen 96 GFRSFGLW 103 (161)
T ss_dssp HHHT--GC
T ss_pred CCCccccc
Confidence 99776643
No 281
>PRK13768 GTPase; Provisional
Probab=98.91 E-value=1.1e-08 Score=84.29 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=45.1
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
..+.+|||||..+........ ..+.+.+.....++++++ +|... .+..+......+..........|+++|+||+|
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~-~~~~~~l~~~~~~~ii~l--iD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D 173 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESG-RKLVERLSGSSKSVVVFL--IDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD 173 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHH-HHHHHHHHhcCCeEEEEE--echHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence 368999999986654332222 222233322238999999 44423 34444444333332111122389999999999
Q ss_pred CCC
Q 026593 164 LCP 166 (236)
Q Consensus 164 ~~~ 166 (236)
+.+
T Consensus 174 ~~~ 176 (253)
T PRK13768 174 LLS 176 (253)
T ss_pred hcC
Confidence 973
No 282
>PRK12740 elongation factor G; Reviewed
Probab=98.90 E-value=7e-09 Score=96.80 Aligned_cols=108 Identities=15% Similarity=0.200 Sum_probs=67.9
Q ss_pred EcCCCCCHHHHHHHHhCCCcccc-----------ccC------cCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHH
Q 026593 43 MGKGGVGKSSTVNSVIGERVVTV-----------NSF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 105 (236)
Q Consensus 43 vG~~g~GKSSlin~l~~~~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~ 105 (236)
+|+.++|||||+++|+....... .+. .+.+.........+.+..+.+|||||..++. .+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~---~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFT---GEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHH---HHH
Confidence 59999999999999964432111 011 1122233345667788999999999985421 122
Q ss_pred HHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 106 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 106 ~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
. .++ ..+|++++|++... .........+..+... ..|+++|+||+|..
T Consensus 78 ~----~~l--~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~ 125 (668)
T PRK12740 78 E----RAL--RVLDGAVVVVCAVG-GVEPQTETVWRQAEKY-----GVPRIIFVNKMDRA 125 (668)
T ss_pred H----HHH--HHhCeEEEEEeCCC-CcCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 2 222 37899999966543 2444444455444432 27899999999985
No 283
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=3.6e-09 Score=80.97 Aligned_cols=117 Identities=12% Similarity=0.149 Sum_probs=78.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
++++.+|+++|--+|||||++..+--.+...+ . .|.........+.+..+.+||.-|+...+.....+.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt--v--PTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~------- 82 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT--V--PTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYF------- 82 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC--C--CccccceeEEEEcceEEEEEecCCCcccccchhhhc-------
Confidence 45779999999999999999988776654333 2 233445556677899999999999855544332222
Q ss_pred hcCCCcEEEEEEeC-CCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRL-DAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...++++||.+- |+.|+.++-.++.+.+...- -...|+.+..||.|+.
T Consensus 83 --~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~--l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 83 --QNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE--LRNAPLLVFANKQDLP 131 (181)
T ss_pred --cCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc--cCCceEEEEechhhcc
Confidence 478999999443 33345544334433333322 1348999999999984
No 284
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.89 E-value=4.9e-08 Score=72.53 Aligned_cols=124 Identities=12% Similarity=0.124 Sum_probs=74.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee---CCeeEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---GGFTLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
.+..+++++|.-++|||+++..++-.+.....+..++....+.....- ....++++||.|+.+...... +.
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLp------rh 80 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELP------RH 80 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhh------Hh
Confidence 356799999999999999998877444333333333333344333321 223789999999976522111 22
Q ss_pred HHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 168 (236)
|+ .-+|++++|++..... |+..+ .+-++|.+ +....-.|++++.|++|+..+.
T Consensus 81 y~--q~aDafVLVYs~~d~eSf~rv~-llKk~Idk-~KdKKEvpiVVLaN~rdr~~p~ 134 (198)
T KOG3883|consen 81 YF--QFADAFVLVYSPMDPESFQRVE-LLKKEIDK-HKDKKEVPIVVLANKRDRAEPR 134 (198)
T ss_pred Hh--ccCceEEEEecCCCHHHHHHHH-HHHHHHhh-ccccccccEEEEechhhcccch
Confidence 33 3689999998764322 32211 11122222 2233448999999999997443
No 285
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.89 E-value=8.7e-09 Score=83.70 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=42.4
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhC--ccccCcEEEEEeCC
Q 026593 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHA 162 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~ 162 (236)
..+++|||||+-+...... .-..|-+.+....+-+++|| +|..|-+.. .-++-.+.-.|. -....|+++|+||+
T Consensus 116 ~~~~liDTPGQIE~FtWSA-sGsIIte~lass~ptvv~Yv--vDt~rs~~p-~tFMSNMlYAcSilyktklp~ivvfNK~ 191 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSA-SGSIITETLASSFPTVVVYV--VDTPRSTSP-TTFMSNMLYACSILYKTKLPFIVVFNKT 191 (366)
T ss_pred cCEEEEcCCCceEEEEecC-CccchHhhHhhcCCeEEEEE--ecCCcCCCc-hhHHHHHHHHHHHHHhccCCeEEEEecc
Confidence 3589999999865432110 01112223333578999999 544442221 222222222222 12238999999999
Q ss_pred CCC
Q 026593 163 QLC 165 (236)
Q Consensus 163 D~~ 165 (236)
|..
T Consensus 192 Dv~ 194 (366)
T KOG1532|consen 192 DVS 194 (366)
T ss_pred ccc
Confidence 996
No 286
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.88 E-value=1.4e-08 Score=88.79 Aligned_cols=84 Identities=24% Similarity=0.294 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEee---------------------e---CCeeEEEEeCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS---------------------K---GGFTLNIIDTP 93 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~~~~liDTP 93 (236)
++|+++|.+++|||||+|+|++... .+.+++.+|..+...... . ....+.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 6899999999999999999998875 445666666555443211 1 12457899999
Q ss_pred CCCCCCCC----hHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026593 94 GLVEAGYV----NYQALELIKGFLLNKTIDVLLYADRLD 128 (236)
Q Consensus 94 G~~d~~~~----~~~~~~~i~~~l~~~~~~~il~v~~~d 128 (236)
|+...... ...+++.+ ..+|++++|++..
T Consensus 81 Gl~~ga~~g~glg~~fL~~i------r~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDL------RQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchhhHHHHHHHHH------HHCCEEEEEEeCC
Confidence 98654322 22344444 3899999997763
No 287
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=2e-08 Score=81.72 Aligned_cols=168 Identities=18% Similarity=0.263 Sum_probs=104.9
Q ss_pred cccccccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccc---cCcCcccceEEEEeee
Q 026593 6 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVN---SFQSEALRPVMVSRSK 82 (236)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~---~~~~~~~~~~~~~~~~ 82 (236)
..+-.|+..|+++-.+ +..++ .=.++|+-+|.+|.|||||+..|++....... ..+.+......+...-
T Consensus 19 l~GHvGFdsLPdQLV~------ksv~~--GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqE 90 (406)
T KOG3859|consen 19 LAGHVGFDSLPDQLVN------KSVSQ--GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQE 90 (406)
T ss_pred ecCccCcccChHHHHH------HHHhc--CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhh
Confidence 3445699999998866 23322 24589999999999999999999988753221 1222333333333333
Q ss_pred CC--eeEEEEeCCCCCCCCCChHH---HHH----H----------HHHHH---hcCCCcEEEEEEeCCCCCCChHHHHHH
Q 026593 83 GG--FTLNIIDTPGLVEAGYVNYQ---ALE----L----------IKGFL---LNKTIDVLLYADRLDAYRVDDLDRQII 140 (236)
Q Consensus 83 ~~--~~~~liDTPG~~d~~~~~~~---~~~----~----------i~~~l---~~~~~~~il~v~~~d~~~~~~~~~~~l 140 (236)
.+ .+++++||.|++|.-..++. +.. . +++.+ .+..+|+.+|.+...+.++...|...+
T Consensus 91 snvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtm 170 (406)
T KOG3859|consen 91 SNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTM 170 (406)
T ss_pred cCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHH
Confidence 33 37899999999985322111 111 1 12222 135799999996666656777777777
Q ss_pred HHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHHHhhchHHHHHHHHhhcc
Q 026593 141 KAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAG 192 (236)
Q Consensus 141 ~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 192 (236)
+.+... .++|.|+-|+|-. +-.+..+-..+.+.++...+..
T Consensus 171 k~Ldsk------VNIIPvIAKaDti-----sK~eL~~FK~kimsEL~sngv~ 211 (406)
T KOG3859|consen 171 KKLDSK------VNIIPVIAKADTI-----SKEELKRFKIKIMSELVSNGVQ 211 (406)
T ss_pred HHHhhh------hhhHHHHHHhhhh-----hHHHHHHHHHHHHHHHHhcCce
Confidence 777665 7899999999875 2233332234455666665543
No 288
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=8.2e-09 Score=75.54 Aligned_cols=126 Identities=13% Similarity=0.163 Sum_probs=77.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcC---cccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS---EALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
++-+++|..|+|||.|+..++..++. .+.|. +..........-...++.+|||.|+..+.. ..+.+.
T Consensus 12 fkyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtagqerfra-------vtrsyy- 81 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA-------VTRSYY- 81 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeecccHHHHHH-------HHHHHh-
Confidence 68899999999999999999977642 22221 111222222333445789999999854432 222222
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHHH
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYC 176 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~ 176 (236)
.++.+.+.|+++.+.+.....-.|+.--+.. .+....+++++||+|+.+.++..+++..
T Consensus 82 -rgaagalmvyditrrstynhlsswl~dar~l--tnpnt~i~lignkadle~qrdv~yeeak 140 (215)
T KOG0097|consen 82 -RGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKADLESQRDVTYEEAK 140 (215)
T ss_pred -ccccceeEEEEehhhhhhhhHHHHHhhhhcc--CCCceEEEEecchhhhhhcccCcHHHHH
Confidence 4888889998887533222222333332222 2333568899999999877777777653
No 289
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.87 E-value=6.1e-09 Score=74.75 Aligned_cols=99 Identities=23% Similarity=0.240 Sum_probs=62.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
||+++|..|+|||||.+++-|.+.. ..+.+... |+.. -.|||||-+-.+ ......+... ...+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--------ykKTQAve--~~d~--~~IDTPGEy~~~---~~~Y~aL~tt--~~da 65 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--------YKKTQAVE--FNDK--GDIDTPGEYFEH---PRWYHALITT--LQDA 65 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--------hcccceee--ccCc--cccCCchhhhhh---hHHHHHHHHH--hhcc
Confidence 7999999999999999999998742 12222222 2221 248999964222 2232222222 2589
Q ss_pred cEEEEEEeCCCC--CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 119 DVLLYADRLDAY--RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 119 ~~il~v~~~d~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
|++++|...+.. +|++ .|..-..+++|-|+||+|+.
T Consensus 66 dvi~~v~~and~~s~f~p-----------~f~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 66 DVIIYVHAANDPESRFPP-----------GFLDIGVKKVIGVVTKADLA 103 (148)
T ss_pred ceeeeeecccCccccCCc-----------ccccccccceEEEEeccccc
Confidence 999999776542 1332 22222236799999999996
No 290
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.87 E-value=1.4e-08 Score=77.53 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=41.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGL 95 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~ 95 (236)
....+++++|.+|+||||++|++.+.....+++.++.+.... ....+..+.+|||||+
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~DtpGi 156 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ---LVKITSKIYLLDTPGV 156 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE---EEEcCCCEEEEECcCC
Confidence 356899999999999999999999876545555444432222 2112346899999996
No 291
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.86 E-value=4e-08 Score=72.06 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-eeEEEEeCCCCCCCCCC
Q 026593 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYV 101 (236)
Q Consensus 23 ~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~liDTPG~~d~~~~ 101 (236)
+..++..+..+....++|+++|--++|||||+..|.+.++...-+ |.........+.+ .++.+||.-|+-..+..
T Consensus 3 l~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~f~LnvwDiGGqr~IRpy 78 (185)
T KOG0074|consen 3 LETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGTFHLNVWDIGGQRGIRPY 78 (185)
T ss_pred HHHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCcEEEEEEecCCccccchh
Confidence 455666777666788999999999999999999999998643322 2223334445555 79999999987554433
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 102 NYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 102 ~~~~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...++ .++|.++||++-.... +.+...++.+.+.+. +-...|+.+..||-|+.
T Consensus 79 WsNYy---------envd~lIyVIDS~D~krfeE~~~el~ELleee--Kl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 79 WSNYY---------ENVDGLIYVIDSTDEKRFEEISEELVELLEEE--KLAEVPVLIFANKQDLL 132 (185)
T ss_pred hhhhh---------hccceEEEEEeCCchHhHHHHHHHHHHHhhhh--hhhccceeehhhhhHHH
Confidence 32222 3789999995432111 222112222222221 22237888888988876
No 292
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=3.4e-08 Score=84.60 Aligned_cols=140 Identities=14% Similarity=0.202 Sum_probs=80.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccc----------c--------------------cCcCcccceEEEEeeeC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTV----------N--------------------SFQSEALRPVMVSRSKG 83 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~----------~--------------------~~~~~~~~~~~~~~~~~ 83 (236)
.++.++++++|+..+|||||+-+|+-.-.... + ...+.|.......++-+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 46789999999999999999988884311000 0 00111222222333445
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCC------ChHHHHHHHHHHHhhCccccCcEEE
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV------DDLDRQIIKAVTGTFGKQIWRKSLL 157 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~------~~~~~~~l~~l~~~~~~~~~~~~iv 157 (236)
...++++|+||.-|+. ...+.. ...+|+-++|.+.....+ ..+.++ --.|....|. ..+||
T Consensus 84 k~~~tIiDaPGHrdFv------knmItG---asqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlGi---~~lIV 150 (428)
T COG5256 84 KYNFTIIDAPGHRDFV------KNMITG---ASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLGI---KQLIV 150 (428)
T ss_pred CceEEEeeCCchHHHH------HHhhcc---hhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcCC---ceEEE
Confidence 5679999999974431 111211 137899999976654321 222222 2334445554 88999
Q ss_pred EEeCCCCCCCCCCchHHHHhhchHHHHHHHHhh
Q 026593 158 VLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLG 190 (236)
Q Consensus 158 v~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 190 (236)
++||+|+.+ ++-++|.+- ...+..+++.+
T Consensus 151 avNKMD~v~---wde~rf~ei-~~~v~~l~k~~ 179 (428)
T COG5256 151 AVNKMDLVS---WDEERFEEI-VSEVSKLLKMV 179 (428)
T ss_pred EEEcccccc---cCHHHHHHH-HHHHHHHHHHc
Confidence 999999863 455555333 33444444433
No 293
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=5.5e-08 Score=71.20 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=76.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
+.++.+|+.+|-.++||||++..|.-.....+ . .|........++.+..+.+||.-|+.. +....+++.
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~--i--pTvGFnvetVtykN~kfNvwdvGGqd~-------iRplWrhYy 82 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTT--I--PTVGFNVETVTYKNVKFNVWDVGGQDK-------IRPLWRHYY 82 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCCccc--c--cccceeEEEEEeeeeEEeeeeccCchh-------hhHHHHhhc
Confidence 44689999999999999999988875542211 1 133344556678899999999988743 333344444
Q ss_pred hcCCCcEEEEEEeC-CCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRL-DAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
++..++|||.+. +++++.++..++-..|...- -...++.++.||-|+.+
T Consensus 83 --~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~e--m~~~~~LvlANkQDlp~ 132 (180)
T KOG0071|consen 83 --TGTQGLIFVVDSADRDRIEEARNELHRIINDRE--MRDAIILILANKQDLPD 132 (180)
T ss_pred --cCCceEEEEEeccchhhHHHHHHHHHHHhCCHh--hhcceEEEEecCccccc
Confidence 688999999443 33344444333333332221 12278899999999853
No 294
>PRK12289 GTPase RsgA; Reviewed
Probab=98.83 E-value=8.3e-09 Score=88.65 Aligned_cols=59 Identities=27% Similarity=0.396 Sum_probs=41.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcC-------cccceEEEEeeeCCeeEEEEeCCCCCCCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~liDTPG~~d~~~ 100 (236)
.++++|++|+|||||+|+|++.....++..++ +|.....+... .+ ..++||||+.....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-~g--~~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-NG--GLLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-CC--cEEEeCCCcccccc
Confidence 48999999999999999999887656665544 33333333332 22 27999999976654
No 295
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.2e-09 Score=81.40 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=71.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCccc--ceE--EEEee---eCC----eeEEEEeCCCCCCCCCChHHHH
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEAL--RPV--MVSRS---KGG----FTLNIIDTPGLVEAGYVNYQAL 106 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~--~~~--~~~~~---~~~----~~~~liDTPG~~d~~~~~~~~~ 106 (236)
++.+.+|.+|+||||++-..+..++.. .-+..+.. ..+ .+... ..| ..+.+|||.|+..+....-.
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~-qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA-- 86 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNT-QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA-- 86 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccc-eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH--
Confidence 366788999999999988777654211 00000000 111 11110 011 36789999999655433222
Q ss_pred HHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 107 ELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 107 ~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
.+ ..+=++++++++.+......-..|+.+++...-.+. +-+++++||+|+.+.
T Consensus 87 -Ff------RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~-PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 87 -FF------RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN-PDIVLCGNKADLEDQ 139 (219)
T ss_pred -HH------HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC-CCEEEEcCccchhhh
Confidence 22 256788899888765433445678888776654332 679999999999643
No 296
>PRK12288 GTPase RsgA; Reviewed
Probab=98.80 E-value=1.7e-08 Score=86.71 Aligned_cols=59 Identities=29% Similarity=0.504 Sum_probs=40.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCc-------ccceEEEEeeeCCeeEEEEeCCCCCCCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSE-------ALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~liDTPG~~d~~~ 100 (236)
.++++|.+|+|||||+|+|++.....++..+.. |+....+....+ ..++||||+-+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~l 272 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFGL 272 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcccC
Confidence 478999999999999999999876666655432 222222222212 35999999977664
No 297
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.78 E-value=1.4e-07 Score=82.72 Aligned_cols=119 Identities=19% Similarity=0.211 Sum_probs=70.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCCccccccCcCc----------cc---ceEEEEee---------------
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQSE----------AL---RPVMVSRS--------------- 81 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~------~~~~~~~~~~~~~----------~~---~~~~~~~~--------------- 81 (236)
++..|+++|.+|+||||++..|. |.++..++..+.. .. .+......
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35689999999999999998886 5443333221100 00 00010000
Q ss_pred -eCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEe
Q 026593 82 -KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (236)
Q Consensus 82 -~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 160 (236)
..+..++||||||... .+.....++........++.+++| +|+.. ........+.+.+.. .+.-+|+|
T Consensus 179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~~~p~e~lLV--lda~~-Gq~a~~~a~~F~~~~-----~~~g~IlT 247 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEAIQPDNIIFV--MDGSI-GQAAEAQAKAFKDSV-----DVGSVIIT 247 (429)
T ss_pred HhCCCCEEEEECCCCCc---chHHHHHHHHHHhhhcCCcEEEEE--ecccc-ChhHHHHHHHHHhcc-----CCcEEEEE
Confidence 0256899999999643 334555666665555578999999 55422 222233334443332 57789999
Q ss_pred CCCCC
Q 026593 161 HAQLC 165 (236)
Q Consensus 161 k~D~~ 165 (236)
|.|..
T Consensus 248 KlD~~ 252 (429)
T TIGR01425 248 KLDGH 252 (429)
T ss_pred CccCC
Confidence 99975
No 298
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.77 E-value=4e-08 Score=85.07 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=66.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC-----ccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHH-HHHHH
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGER-----VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIK 110 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~-~~~i~ 110 (236)
..+++++|.+|+|||||+|+|++.. ...++..+++|....... . +..+.++||||+.......+.. .+.+.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 3699999999999999999999853 245666666665444332 2 2346799999997653211111 01111
Q ss_pred HHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 111 GFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 111 ~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..........+.|. ++... +.......++.+.. . ...+.+.+++.+..
T Consensus 231 ~~~~~~~i~~~~~~--l~~~q~~~~ggl~~~d~~~~---~--~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 231 YITPKKEIKPKTYQ--LNPNQTLFLGGLARFDYLKG---E--KTSFTFYVSNELNI 279 (360)
T ss_pred hcCCCCccCceEEE--eCCCCEEEEceEEEEEEecC---C--ceEEEEEccCCcee
Confidence 12223456777777 33222 22222222222221 1 14566666766554
No 299
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.77 E-value=9.7e-08 Score=82.80 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=83.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccc------------c---CcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVN------------S---FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN 102 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~ 102 (236)
-+|+++.+.-.|||||+..|+.....+-. + -.+.|.-.+.....|++..+.++||||..|+....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 48999999999999999999966322211 0 01223333445667899999999999999998766
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHHHhhchHH
Q 026593 103 YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDA 182 (236)
Q Consensus 103 ~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~~~~ 182 (236)
+.+++ -+|.++++.+.....+.+ .+..++.-.+. . .+-|+|+||+|..++ ..++.+ ++.
T Consensus 86 ERvl~---------MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~~---g--L~PIVVvNKiDrp~A---rp~~Vv---d~v 144 (603)
T COG1217 86 ERVLS---------MVDGVLLLVDASEGPMPQ-TRFVLKKALAL---G--LKPIVVINKIDRPDA---RPDEVV---DEV 144 (603)
T ss_pred hhhhh---------hcceEEEEEEcccCCCCc-hhhhHHHHHHc---C--CCcEEEEeCCCCCCC---CHHHHH---HHH
Confidence 65554 568888885542222433 33333332222 1 667889999997433 233332 334
Q ss_pred HHHHHHhhcc
Q 026593 183 LLKTIRLGAG 192 (236)
Q Consensus 183 l~~~i~~~~~ 192 (236)
+.-+++.++.
T Consensus 145 fDLf~~L~A~ 154 (603)
T COG1217 145 FDLFVELGAT 154 (603)
T ss_pred HHHHHHhCCC
Confidence 4445554444
No 300
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.76 E-value=3.4e-07 Score=78.01 Aligned_cols=36 Identities=36% Similarity=0.420 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 026593 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 23 ~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~ 58 (236)
..++++.+......++.|.++|.+|+|||||++.+.
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHH
Confidence 445667666555688999999999999999998865
No 301
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.76 E-value=2e-07 Score=82.86 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=68.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccc-C-cCcccc----------------eEEE-Ee----------------
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-F-QSEALR----------------PVMV-SR---------------- 80 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~-~-~~~~~~----------------~~~~-~~---------------- 80 (236)
..++|.++|+-.+|||||+.+|+|........ . .+.|.. +..+ ..
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 56899999999999999999999864221110 0 000000 0000 00
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEe
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 160 (236)
......+.++||||.. .+.+.+...+ ..+|++++|.+.+......+..+.+. +.+..+. .++++|+|
T Consensus 113 ~~~~~~i~~IDtPGH~-------~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi---~~iIVvlN 179 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHD-------ILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHLA-AVEIMKL---KHIIILQN 179 (460)
T ss_pred ccccceEeeeeCCCHH-------HHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHHH-HHHHcCC---CcEEEEEe
Confidence 0012478999999963 3333333333 47899999966553112333334433 2333343 68999999
Q ss_pred CCCCC
Q 026593 161 HAQLC 165 (236)
Q Consensus 161 k~D~~ 165 (236)
|+|+.
T Consensus 180 KiDlv 184 (460)
T PTZ00327 180 KIDLV 184 (460)
T ss_pred ccccc
Confidence 99986
No 302
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.75 E-value=2e-08 Score=82.35 Aligned_cols=59 Identities=32% Similarity=0.364 Sum_probs=40.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcC-------cccceEEEEeeeCCeeEEEEeCCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~liDTPG~~d~~~ 100 (236)
-.++++|.+|+|||||+|+|++.....++.... +|........ .+ ..++||||+.....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccccCC
Confidence 378999999999999999999876544443322 2333333333 22 37999999977653
No 303
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.74 E-value=2.5e-08 Score=82.84 Aligned_cols=59 Identities=29% Similarity=0.497 Sum_probs=39.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcC-------cccceEEEEeeeCCeeEEEEeCCCCCCCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~liDTPG~~d~~~ 100 (236)
..+++|.+|+|||||+|+|.+.....++++.. +|+....+....+| .++||||+-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 77888999999999999999865444443221 22233333333233 6899999977654
No 304
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=5.6e-07 Score=79.55 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=79.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEee-eCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..+.-|-++|+.-.|||||+.+|-+..++.. ...+.|+....+... ..|..++|.||||. .++..||. .
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-E~GGITQhIGAF~V~~p~G~~iTFLDTPGH--------aAF~aMRa-R 220 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-EAGGITQHIGAFTVTLPSGKSITFLDTPGH--------AAFSAMRA-R 220 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehh-hcCCccceeceEEEecCCCCEEEEecCCcH--------HHHHHHHh-c
Confidence 3567889999999999999999998886442 333444444333332 27789999999998 44444532 1
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
-....|.+++|...|. ...++..+.+++.+.. ..|+++.+||+|..
T Consensus 221 GA~vtDIvVLVVAadD-GVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADD-GVMPQTLEAIKHAKSA-----NVPIVVAINKIDKP 266 (683)
T ss_pred cCccccEEEEEEEccC-CccHhHHHHHHHHHhc-----CCCEEEEEeccCCC
Confidence 2235799999976654 3555556666555544 39999999999963
No 305
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=3.8e-07 Score=80.54 Aligned_cols=114 Identities=13% Similarity=0.110 Sum_probs=82.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC---CeeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
.++-+.++|+--.|||||+..+-+.++.. ....+.|+....++...+ ...++|+||||. +.+..+|.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH--------eAFt~mRa- 73 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH--------EAFTAMRA- 73 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCcH--------HHHHHHHh-
Confidence 45678899999999999999999888643 334455666666666653 468999999998 34444431
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.-..-.|.+++|..+|. .+.++..+.+..++... .|+++.+||+|..
T Consensus 74 RGa~vtDIaILVVa~dD-Gv~pQTiEAI~hak~a~-----vP~iVAiNKiDk~ 120 (509)
T COG0532 74 RGASVTDIAILVVAADD-GVMPQTIEAINHAKAAG-----VPIVVAINKIDKP 120 (509)
T ss_pred cCCccccEEEEEEEccC-CcchhHHHHHHHHHHCC-----CCEEEEEecccCC
Confidence 11123799999977764 36666677777777653 9999999999985
No 306
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.70 E-value=8.6e-09 Score=78.43 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=72.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEe--eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR--SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++++++|..++||||+|.+++..-+..... ............ ......+.+|||.|+.+++.....+ .
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdyk-ktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAy---y----- 90 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYK-KTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAY---Y----- 90 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccc-cccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHH---h-----
Confidence 4799999999999999999999553211100 000000000111 1123356789999997654332221 2
Q ss_pred cCCCcEEEEEEeC-CCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRL-DAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++.+.++|++. |+.+| +....|-+.+.+..+. .|.++|-||+|+.+
T Consensus 91 -rgaqa~vLVFSTTDr~SF-ea~~~w~~kv~~e~~~---IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 91 -RGAQASVLVFSTTDRYSF-EATLEWYNKVQKETER---IPTVFVQNKIDLVE 138 (246)
T ss_pred -ccccceEEEEecccHHHH-HHHHHHHHHHHHHhcc---CCeEEeeccchhhH
Confidence 488888888765 43334 3346677777777665 99999999999973
No 307
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.69 E-value=1.4e-08 Score=80.55 Aligned_cols=71 Identities=24% Similarity=0.207 Sum_probs=43.3
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
+.++++|||||.... +.+...+++.++....++-+++|.+... ...+........+.+ .+--+++||.|
T Consensus 83 ~~D~vlIDT~Gr~~~---d~~~~~el~~~~~~~~~~~~~LVlsa~~---~~~~~~~~~~~~~~~-----~~~~lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPR---DEELLEELKKLLEALNPDEVHLVLSATM---GQEDLEQALAFYEAF-----GIDGLILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SSSST---HHHHHHHHHHHHHHHSSSEEEEEEEGGG---GGHHHHHHHHHHHHS-----STCEEEEESTT
T ss_pred CCCEEEEecCCcchh---hHHHHHHHHHHhhhcCCccceEEEeccc---ChHHHHHHHHHhhcc-----cCceEEEEeec
Confidence 457999999998533 3445555655554447888888855432 233343444444443 34577899999
Q ss_pred CC
Q 026593 164 LC 165 (236)
Q Consensus 164 ~~ 165 (236)
..
T Consensus 152 et 153 (196)
T PF00448_consen 152 ET 153 (196)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 308
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.66 E-value=2.2e-07 Score=77.33 Aligned_cols=129 Identities=15% Similarity=0.175 Sum_probs=79.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEe-eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR-SKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
+.+...|.++|-++||||||+++|++........ ...|..+..... -..|+.+.+.||-||... ........++.-
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~dr-LFATLDpT~h~a~Lpsg~~vlltDTvGFisd--LP~~LvaAF~AT 251 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDR-LFATLDPTLHSAHLPSGNFVLLTDTVGFISD--LPIQLVAAFQAT 251 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccch-hheeccchhhhccCCCCcEEEEeechhhhhh--CcHHHHHHHHHH
Confidence 3455789999999999999999999776533221 112222222222 236778999999998542 222222333332
Q ss_pred Hhc-CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhC--ccccCcEEEEEeCCCCC
Q 026593 113 LLN-KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~-~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~ 165 (236)
+.+ ..+|+++-|.++.......+....+..|.+.-- ......++=|-||.|..
T Consensus 252 LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 252 LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 322 589999999777654444444455666665432 12335678889999875
No 309
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.64 E-value=3.3e-07 Score=74.74 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=75.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCC---CChHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG---YVNYQALELIKGF 112 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~---~~~~~~~~~i~~~ 112 (236)
...++++.|.+++|||||+|.++-.+...-...+ .....+......-+..+.++|.||++.+. ....+.-.....+
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~-K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKS-KNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCC-CCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 4589999999999999999999876532211111 11122222222346678999999965433 1223444445555
Q ss_pred HhcC--CCcEEEEEEeCCCC-CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNK--TIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~--~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+.+. -..+++++ |+. .+...|...+.++-+.. .|..+|+||||..
T Consensus 214 ~leR~nLv~~FLLv---d~sv~i~~~D~~~i~~~ge~~-----VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 214 LLERENLVRVFLLV---DASVPIQPTDNPEIAWLGENN-----VPMTSVFTKCDKQ 261 (320)
T ss_pred HHhhhhhheeeeee---eccCCCCCCChHHHHHHhhcC-----CCeEEeeehhhhh
Confidence 5432 34555555 222 36666777777776654 8999999999974
No 310
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.63 E-value=9.8e-08 Score=82.36 Aligned_cols=119 Identities=20% Similarity=0.154 Sum_probs=66.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC------CccccccCcC----c---------ccceEEEEee-------------eC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE------RVVTVNSFQS----E---------ALRPVMVSRS-------------KG 83 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~------~~~~~~~~~~----~---------~~~~~~~~~~-------------~~ 83 (236)
.+..|+++|++|+||||++..|... .+......+. . ...+...... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999888632 2111111000 0 0000000000 01
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
+..++||||||.... +...+.++.+.+....++.+++| +++..-...-...++.+.. ...--+|+||.|
T Consensus 320 ~~DvVLIDTaGRs~k---d~~lm~EL~~~lk~~~PdevlLV--LsATtk~~d~~~i~~~F~~------~~idglI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKNYR---ASETVEEMIETMGQVEPDYICLT--LSASMKSKDMIEIITNFKD------IHIDGIVFTKFD 388 (436)
T ss_pred CCCEEEEeCccccCc---CHHHHHHHHHHHhhcCCCeEEEE--ECCccChHHHHHHHHHhcC------CCCCEEEEEccc
Confidence 358999999998442 33445556666655568888888 5442222211333333332 156689999999
Q ss_pred CC
Q 026593 164 LC 165 (236)
Q Consensus 164 ~~ 165 (236)
..
T Consensus 389 ET 390 (436)
T PRK11889 389 ET 390 (436)
T ss_pred CC
Confidence 86
No 311
>PRK13796 GTPase YqeH; Provisional
Probab=98.63 E-value=1e-07 Score=82.66 Aligned_cols=59 Identities=29% Similarity=0.464 Sum_probs=42.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC-----CccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE-----RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~ 98 (236)
.-+++++|.+|+|||||+|+|++. +...++..+++|........ . ....++||||+...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~-~~~~l~DTPGi~~~ 223 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--D-DGSFLYDTPGIIHR 223 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--C-CCcEEEECCCcccc
Confidence 458999999999999999999854 23346677776665544333 2 22479999999643
No 312
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=3.6e-07 Score=68.88 Aligned_cols=115 Identities=19% Similarity=0.268 Sum_probs=77.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
+.-++++.|--++|||||++.|-........+ |..+........+.+++.+|.-|.- ++.+..++|.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP----TlHPTSE~l~Ig~m~ftt~DLGGH~-------qArr~wkdyf-- 85 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELSIGGMTFTTFDLGGHL-------QARRVWKDYF-- 85 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCC----CcCCChHHheecCceEEEEccccHH-------HHHHHHHHHH--
Confidence 56699999999999999999988766432222 3344445566788899999988862 4445555555
Q ss_pred CCCcEEEEEEeC-CCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRL-DAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+.+|+|+|.++. |..++.+.-. -++.+...- .-.+.|+++++||+|..
T Consensus 86 ~~v~~iv~lvda~d~er~~es~~-eld~ll~~e-~la~vp~lilgnKId~p 134 (193)
T KOG0077|consen 86 PQVDAIVYLVDAYDQERFAESKK-ELDALLSDE-SLATVPFLILGNKIDIP 134 (193)
T ss_pred hhhceeEeeeehhhHHHhHHHHH-HHHHHHhHH-HHhcCcceeecccccCC
Confidence 689999999665 5445544422 222222221 11348999999999985
No 313
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.61 E-value=6.5e-07 Score=79.14 Aligned_cols=80 Identities=16% Similarity=0.381 Sum_probs=48.2
Q ss_pred eEEEEeCCCCCCCCC------ChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEE
Q 026593 86 TLNIIDTPGLVEAGY------VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 159 (236)
Q Consensus 86 ~~~liDTPG~~d~~~------~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~ 159 (236)
..+++|.||+-.+-. ..+.+.+..+.++ ..|++||+| +...+... ++..+.-+...+. ...++.|+|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM--~NPNAIILC--IQDGSVDA-ERSnVTDLVsq~D-P~GrRTIfVL 486 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYM--QNPNAIILC--IQDGSVDA-ERSIVTDLVSQMD-PHGRRTIFVL 486 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHh--cCCCeEEEE--eccCCcch-hhhhHHHHHHhcC-CCCCeeEEEE
Confidence 578999999865421 2234444444455 589999999 53323433 3433333333332 2338899999
Q ss_pred eCCCCCCCCCCc
Q 026593 160 THAQLCPPDGLN 171 (236)
Q Consensus 160 tk~D~~~~~~~~ 171 (236)
||+|++.++-.+
T Consensus 487 TKVDlAEknlA~ 498 (980)
T KOG0447|consen 487 TKVDLAEKNVAS 498 (980)
T ss_pred eecchhhhccCC
Confidence 999997544433
No 314
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.9e-07 Score=85.30 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=74.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccc-----------cccCc------CcccceEEEEeeeCC-eeEEEEeCCCCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVT-----------VNSFQ------SEALRPVMVSRSKGG-FTLNIIDTPGLVEA 98 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~-----------~~~~~------~~~~~~~~~~~~~~~-~~~~liDTPG~~d~ 98 (236)
--+|.++|+..+|||||..+|+-..... +.++. +.|......+..|.+ ..+++|||||.-|+
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDF 89 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDF 89 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcccc
Confidence 3589999999999999999888432111 11111 122333345667885 99999999999887
Q ss_pred CCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 99 ~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
... ..+.++ -.|+.++|++... ....+.....++..+.. .|.++++||+|..
T Consensus 90 t~E---V~rslr------vlDgavvVvdave-GV~~QTEtv~rqa~~~~-----vp~i~fiNKmDR~ 141 (697)
T COG0480 90 TIE---VERSLR------VLDGAVVVVDAVE-GVEPQTETVWRQADKYG-----VPRILFVNKMDRL 141 (697)
T ss_pred HHH---HHHHHH------hhcceEEEEECCC-CeeecHHHHHHHHhhcC-----CCeEEEEECcccc
Confidence 543 333333 5688888855533 24444444555555543 8999999999986
No 315
>PRK00098 GTPase RsgA; Reviewed
Probab=98.59 E-value=2.2e-07 Score=78.52 Aligned_cols=59 Identities=24% Similarity=0.373 Sum_probs=39.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcC-------cccceEEEEeeeCCeeEEEEeCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~liDTPG~~d~~ 99 (236)
-.++++|++|+|||||+|+|++.....++.... +|........ .+ ...++||||+...+
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~--~~-~~~~~DtpG~~~~~ 230 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL--PG-GGLLIDTPGFSSFG 230 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc--CC-CcEEEECCCcCccC
Confidence 478999999999999999999876544443332 2222222222 21 24799999997543
No 316
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.59 E-value=3.6e-07 Score=90.00 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHhcCC---Cc----cEEEEEcCCCCCHHHHHHHHhCCCcccccc-----CcC-cccceEEEEeeeCC
Q 026593 18 ATQNKLIELLSKLKQENV---NT----LTILVMGKGGVGKSSTVNSVIGERVVTVNS-----FQS-EALRPVMVSRSKGG 84 (236)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~---~~----~~IllvG~~g~GKSSlin~l~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~ 84 (236)
..++++++-++.++.... .. .=.+++|++|+||||+++.. |.+...... ..+ ..+....++ =.
T Consensus 85 ~l~~~~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww---f~ 160 (1169)
T TIGR03348 85 ELRARFNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW---FT 160 (1169)
T ss_pred HHHHHHHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE---ec
Confidence 345555665665653221 11 23688899999999999876 444321110 000 011111222 22
Q ss_pred eeEEEEeCCCCCCCCCC----h----HHHHHHHHHHHhcCCCcEEEEEEeCCCC-CCChHH--------HHHHHHHHHhh
Q 026593 85 FTLNIIDTPGLVEAGYV----N----YQALELIKGFLLNKTIDVLLYADRLDAY-RVDDLD--------RQIIKAVTGTF 147 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~----~----~~~~~~i~~~l~~~~~~~il~v~~~d~~-~~~~~~--------~~~l~~l~~~~ 147 (236)
...+++||+|.+-.... + ...+..++++.....+|+||++++++.- ..+.++ +..+..+.+.+
T Consensus 161 ~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l 240 (1169)
T TIGR03348 161 DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL 240 (1169)
T ss_pred CCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34579999997644321 1 1223333333334679999999776421 112221 23355666666
Q ss_pred CccccCcEEEEEeCCCCC
Q 026593 148 GKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 148 ~~~~~~~~ivv~tk~D~~ 165 (236)
|.. .|+++|+||+|+.
T Consensus 241 g~~--~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 241 GAR--FPVYLVLTKADLL 256 (1169)
T ss_pred CCC--CCEEEEEecchhh
Confidence 654 8999999999976
No 317
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=5.6e-07 Score=74.01 Aligned_cols=142 Identities=9% Similarity=0.098 Sum_probs=83.6
Q ss_pred HHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCc----------cccc-----cCcCcccceEEEEeeeCCeeEEEEeCC
Q 026593 29 KLKQENVNTLTILVMGKGGVGKSSTVNSVIGERV----------VTVN-----SFQSEALRPVMVSRSKGGFTLNIIDTP 93 (236)
Q Consensus 29 ~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~liDTP 93 (236)
+..++.++.++|..+|+...|||||..+|+..-. .... ...+.|..+....++...+.+-.+|+|
T Consensus 4 ~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcP 83 (394)
T COG0050 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCP 83 (394)
T ss_pred hhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCC
Confidence 3446778889999999999999999999884310 0011 111233333445556678899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHh-cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCch
Q 026593 94 GLVEAGYVNYQALELIKGFLL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNY 172 (236)
Q Consensus 94 G~~d~~~~~~~~~~~i~~~l~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~ 172 (236)
|..|+ ++..+. ..+.|.-|+|.+.+...+.+ .++.+- +....|. +++++.+||+|+.+ +..+
T Consensus 84 GHaDY----------vKNMItgAaqmDgAILVVsA~dGpmPq-TrEHiL-larqvGv---p~ivvflnK~Dmvd--d~el 146 (394)
T COG0050 84 GHADY----------VKNMITGAAQMDGAILVVAATDGPMPQ-TREHIL-LARQVGV---PYIVVFLNKVDMVD--DEEL 146 (394)
T ss_pred ChHHH----------HHHHhhhHHhcCccEEEEEcCCCCCCc-chhhhh-hhhhcCC---cEEEEEEecccccC--cHHH
Confidence 98543 222221 12567777775553323332 233221 2223343 68999999999973 2233
Q ss_pred HHHHhhchHHHHHHHHhh
Q 026593 173 DVYCSKRSDALLKTIRLG 190 (236)
Q Consensus 173 ~~~~~~~~~~l~~~i~~~ 190 (236)
.+.+ ...+++++.+.
T Consensus 147 lelV---emEvreLLs~y 161 (394)
T COG0050 147 LELV---EMEVRELLSEY 161 (394)
T ss_pred HHHH---HHHHHHHHHHc
Confidence 3333 34566666653
No 318
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=9.7e-07 Score=69.35 Aligned_cols=121 Identities=15% Similarity=0.215 Sum_probs=72.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh-
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL- 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~- 114 (236)
.+-.|+++|.+++|||+|.-.|.......+ .+ ...+.....-++...+++||-||.. .....+.+++.
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~T--vt--Siepn~a~~r~gs~~~~LVD~PGH~-------rlR~kl~e~~~~ 105 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGT--VT--SIEPNEATYRLGSENVTLVDLPGHS-------RLRRKLLEYLKH 105 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCe--ee--eeccceeeEeecCcceEEEeCCCcH-------HHHHHHHHHccc
Confidence 346899999999999999877665532111 11 1122223333455568999999983 22333333332
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHH----HHHHHHHhhCccccCcEEEEEeCCCCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQ----IIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~----~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 169 (236)
...+-+|+|| +|+..+...-+. +...+....+.....|+.++-||.|+..++.
T Consensus 106 ~~~akaiVFV--VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 106 NYSAKAIVFV--VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred cccceeEEEE--EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence 2367899999 555444443333 3344444433444589999999999975543
No 319
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=5.3e-07 Score=76.26 Aligned_cols=121 Identities=17% Similarity=0.283 Sum_probs=71.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEE--E-----------------eeeCC--------------
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV--S-----------------RSKGG-------------- 84 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~-------------- 84 (236)
.=|+++|+-..||||+|+.|+..+.....-.+..++..-.. + ..+.+
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 46899999999999999999988753211111111111100 0 00000
Q ss_pred --------eeEEEEeCCCCCCCCCCh-HH---HHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCcccc
Q 026593 85 --------FTLNIIDTPGLVEAGYVN-YQ---ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIW 152 (236)
Q Consensus 85 --------~~~~liDTPG~~d~~~~~-~~---~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~ 152 (236)
..+.+|||||+....... .. ....+.=+ ...+|.|+++++...-.++++-.+.+..++ |.+
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WF--aeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E-- 211 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFKRVIDALK---GHE-- 211 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHH--HHhccEEEEEechhhccccHHHHHHHHHhh---CCc--
Confidence 248999999998765431 11 11111111 157999999955433235555455555554 433
Q ss_pred CcEEEEEeCCCCC
Q 026593 153 RKSLLVLTHAQLC 165 (236)
Q Consensus 153 ~~~ivv~tk~D~~ 165 (236)
..+-||+||+|..
T Consensus 212 dkiRVVLNKADqV 224 (532)
T KOG1954|consen 212 DKIRVVLNKADQV 224 (532)
T ss_pred ceeEEEecccccc
Confidence 6788999999986
No 320
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.55 E-value=2.8e-07 Score=77.37 Aligned_cols=59 Identities=27% Similarity=0.443 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcC-------cccceEEEEeeeCCeeEEEEeCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~liDTPG~~d~~ 99 (236)
-.++++|++|+|||||+|.|+|.....++.... +|....... ..+ ...++||||+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~--~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFP--LPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEE--cCC-CCEEEECCCCCccC
Confidence 479999999999999999999976544332221 222222222 221 23799999996644
No 321
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=9.5e-07 Score=79.62 Aligned_cols=127 Identities=15% Similarity=0.192 Sum_probs=74.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcC----------------cccceE---EEEeeeC--CeeEEEEeCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS----------------EALRPV---MVSRSKG--GFTLNIIDTPG 94 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~----------------~~~~~~---~~~~~~~--~~~~~liDTPG 94 (236)
.-.++.++|+-++|||+|...|.+......+.... .+.... ....... .+-+.++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 34689999999999999999998775422211000 000000 0011112 23578999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC--CCCCCch
Q 026593 95 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC--PPDGLNY 172 (236)
Q Consensus 95 ~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~--~~~~~~~ 172 (236)
.-++. + +....+ .-+|++++++++-. .......+++++.-+.. .|+++|+||.|.. +-+....
T Consensus 207 HVnF~--D-E~ta~l------~~sDgvVlvvDv~E-GVmlntEr~ikhaiq~~-----~~i~vviNKiDRLilELkLPP~ 271 (971)
T KOG0468|consen 207 HVNFS--D-ETTASL------RLSDGVVLVVDVAE-GVMLNTERIIKHAIQNR-----LPIVVVINKVDRLILELKLPPM 271 (971)
T ss_pred cccch--H-HHHHHh------hhcceEEEEEEccc-CceeeHHHHHHHHHhcc-----CcEEEEEehhHHHHHHhcCChH
Confidence 86552 2 333334 37899999966522 23344455655555443 8999999999964 1223334
Q ss_pred HHHHh
Q 026593 173 DVYCS 177 (236)
Q Consensus 173 ~~~~~ 177 (236)
+.|.+
T Consensus 272 DAY~K 276 (971)
T KOG0468|consen 272 DAYYK 276 (971)
T ss_pred HHHHH
Confidence 55544
No 322
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=5.2e-07 Score=79.73 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=74.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCcCcccceEEEEeeeCC---eeEEEEeCCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVN--------------SFQSEALRPVMVSRSKGG---FTLNIIDTPGLVEAGY 100 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~---~~~~liDTPG~~d~~~ 100 (236)
-++.++.+--.|||||..+|+....+... .-.+.|...+.....|.+ ..+.+|||||.-|+..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 47889999999999999998844321111 122345555555666655 7899999999999875
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 101 ~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..... + .-++++|+| +|+.. ... +.+-.+...|..+ ..+|.|+||+|+-.+
T Consensus 141 EVsRs---l------aac~G~lLv--VDA~qGvqA---QT~anf~lAfe~~--L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 141 EVSRS---L------AACDGALLV--VDASQGVQA---QTVANFYLAFEAG--LAIIPVLNKIDLPSA 192 (650)
T ss_pred eeheh---h------hhcCceEEE--EEcCcCchH---HHHHHHHHHHHcC--CeEEEeeeccCCCCC
Confidence 44332 2 257889999 44433 332 3333344444333 789999999998533
No 323
>PTZ00099 rab6; Provisional
Probab=98.49 E-value=1.3e-06 Score=68.01 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=47.3
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
..+.||||||...+...... ++ .++|++++|++++... +... ..|+..+....+. ..|+++|+||+|
T Consensus 29 v~l~iwDt~G~e~~~~~~~~-------~~--~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~~~~--~~piilVgNK~D 96 (176)
T PTZ00099 29 VRLQLWDTAGQERFRSLIPS-------YI--RDSAAAIVVYDITNRQSFENT-TKWIQDILNERGK--DVIIALVGNKTD 96 (176)
T ss_pred EEEEEEECCChHHhhhccHH-------Hh--CCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcCC--CCeEEEEEECcc
Confidence 47899999998654432221 22 5899999998876532 4333 4566666555433 378999999999
Q ss_pred CCC
Q 026593 164 LCP 166 (236)
Q Consensus 164 ~~~ 166 (236)
+..
T Consensus 97 L~~ 99 (176)
T PTZ00099 97 LGD 99 (176)
T ss_pred ccc
Confidence 963
No 324
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.49 E-value=3.1e-06 Score=70.53 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=42.6
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh------cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEE
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL------NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL 156 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i 156 (236)
.+..+++|||||.... +.....+++.... ...+|.+++|.+.. ...........+.+.. ...-
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~---~~~~~~~~~~~f~~~~-----~~~g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT---TGQNALEQAKVFNEAV-----GLTG 221 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECC---CCHHHHHHHHHHHhhC-----CCCE
Confidence 4568999999998654 3333444443332 23489999995543 2222233223333322 4678
Q ss_pred EEEeCCCCCC
Q 026593 157 LVLTHAQLCP 166 (236)
Q Consensus 157 vv~tk~D~~~ 166 (236)
+|+||.|...
T Consensus 222 ~IlTKlDe~~ 231 (272)
T TIGR00064 222 IILTKLDGTA 231 (272)
T ss_pred EEEEccCCCC
Confidence 9999999863
No 325
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.48 E-value=2.5e-06 Score=72.17 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 23 ~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
..++++.+.........|.++|++|+|||||++.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4556666666566778999999999999999998774
No 326
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.46 E-value=2.8e-07 Score=79.35 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=64.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCc--cccccCcCcccceE-------------------EE----------EeeeCCe
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERV--VTVNSFQSEALRPV-------------------MV----------SRSKGGF 85 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~--~~~~~~~~~~~~~~-------------------~~----------~~~~~~~ 85 (236)
.-.|+++|+||+||||.+..|...-. .......-.|..++ .. ...+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56899999999999998877764321 00000001111111 00 0112456
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 86 ~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++++|||.|.... +.....+++.++......-+.+|++.+ .- .+-++.+.+.|+.- ..--+++||.|..
T Consensus 283 d~ILVDTaGrs~~---D~~~i~el~~~~~~~~~i~~~Lvlsat--~K----~~dlkei~~~f~~~--~i~~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQY---DKEKIEELKELIDVSHSIEVYLVLSAT--TK----YEDLKEIIKQFSLF--PIDGLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCcc---CHHHHHHHHHHHhccccceEEEEEecC--cc----hHHHHHHHHHhccC--CcceeEEEccccc
Confidence 8999999998443 445566666666433334444453332 21 22334444444431 4557889999986
No 327
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.46 E-value=3.1e-06 Score=71.99 Aligned_cols=24 Identities=38% Similarity=0.690 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
++-.++++|++|+||||++..|.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456889999999999999888774
No 328
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.2e-06 Score=75.63 Aligned_cols=113 Identities=11% Similarity=0.195 Sum_probs=74.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh--CCCc-------------cccccCcC------cccceEEEEeeeCCeeEEEEeCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVI--GERV-------------VTVNSFQS------EALRPVMVSRSKGGFTLNIIDTPGL 95 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~--~~~~-------------~~~~~~~~------~~~~~~~~~~~~~~~~~~liDTPG~ 95 (236)
.-+.+++-+|-+|||||...|+ |..+ ...|++.. .......-++.|.+..+.+.||||.
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 3488999999999999997766 2211 11122111 1122234566789999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 96 VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 96 ~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.|+... .++.+ .-+|..+.| +|+.. +.+...++++..+-. ..|++-.+||+|..
T Consensus 92 eDFSED---TYRtL------tAvDsAvMV--IDaAKGiE~qT~KLfeVcrlR-----~iPI~TFiNKlDR~ 146 (528)
T COG4108 92 EDFSED---TYRTL------TAVDSAVMV--IDAAKGIEPQTLKLFEVCRLR-----DIPIFTFINKLDRE 146 (528)
T ss_pred cccchh---HHHHH------HhhheeeEE--EecccCccHHHHHHHHHHhhc-----CCceEEEeeccccc
Confidence 887532 33333 267888999 66544 666656665544432 28999999999974
No 329
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.7e-06 Score=75.76 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=84.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC--------------------c----------cccccCcCcccceEEEEeeeC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGER--------------------V----------VTVNSFQSEALRPVMVSRSKG 83 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~--------------------~----------~~~~~~~~~~~~~~~~~~~~~ 83 (236)
.++.+.++++|...+|||||...++-.- . .......+.+......++.-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 4456899999999999999998877220 0 000011122333334444555
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCCh-----HHHHHHHHHHHhhCccccCcEEEE
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD-----LDRQIIKAVTGTFGKQIWRKSLLV 158 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~-----~~~~~l~~l~~~~~~~~~~~~ivv 158 (236)
...++++|+||..|+..- . +. ....+|+-++|++.+...|.. .+.+-.-.+...+|. ..+||+
T Consensus 254 ~~~~tliDaPGhkdFi~n---m---i~---g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi---~qliva 321 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPN---M---IS---GASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGI---SQLIVA 321 (603)
T ss_pred ceeEEEecCCCccccchh---h---hc---cccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCc---ceEEEE
Confidence 678999999998766321 1 11 113688888886664433321 112222233344453 789999
Q ss_pred EeCCCCCCCCCCchHHHHhhchHHHHHHHHhhccCC
Q 026593 159 LTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLG 194 (236)
Q Consensus 159 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 194 (236)
+||+|+. +++-++|..- ...+..++.+.++|.
T Consensus 322 iNKmD~V---~Wsq~RF~eI-k~~l~~fL~~~~gf~ 353 (603)
T KOG0458|consen 322 INKMDLV---SWSQDRFEEI-KNKLSSFLKESCGFK 353 (603)
T ss_pred eeccccc---CccHHHHHHH-HHHHHHHHHHhcCcc
Confidence 9999985 3444444332 345677775555553
No 330
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.43 E-value=1.6e-06 Score=69.08 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=69.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-eeEEEEeCCCCCCCCCChHHHHHHHHHHHh--
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAGYVNYQALELIKGFLL-- 114 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~liDTPG~~d~~~~~~~~~~~i~~~l~-- 114 (236)
-+|+++|.+|+||||+-..++..-.+.-...++.|......+.-+-| .-+.+||.-|+..+ +..++.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f----------men~~~~q 74 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF----------MENYLSSQ 74 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH----------HHHHHhhc
Confidence 48999999999999987666533322222233344444444443344 57889999987421 122221
Q ss_pred ----cCCCcEEEEEEeCCCCCCChHH---HHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 ----NKTIDVLLYADRLDAYRVDDLD---RQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ----~~~~~~il~v~~~d~~~~~~~~---~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
-...++++||+++....+...- ...++.+.+.- ..-.+..+++|.|+..
T Consensus 75 ~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S---P~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 75 EDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS---PEAKIFCLLHKMDLVQ 130 (295)
T ss_pred chhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC---CcceEEEEEeechhcc
Confidence 1378999999777654343221 22344444433 2367888999999974
No 331
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.42 E-value=3.9e-07 Score=74.14 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 026593 22 KLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~ 58 (236)
...++++.+.....+.+.|.+.|+||+|||||++.|.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHH
Confidence 4566777777766688999999999999999999887
No 332
>PRK14974 cell division protein FtsY; Provisional
Probab=98.41 E-value=1.8e-06 Score=73.81 Aligned_cols=120 Identities=17% Similarity=0.232 Sum_probs=65.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC------CCccccccC--cCcc--------c--ceEEEE-----------------e
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG------ERVVTVNSF--QSEA--------L--RPVMVS-----------------R 80 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~------~~~~~~~~~--~~~~--------~--~~~~~~-----------------~ 80 (236)
++..|+++|++|+||||++..+.. ..+...... .... . ...... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 467899999999999998877662 222111100 0000 0 000000 0
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEe
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 160 (236)
...+.++++|||||....+ ...+..++.......+|.+++| +++.. ........+.+.+.. ..--+|+|
T Consensus 219 ~~~~~DvVLIDTaGr~~~~---~~lm~eL~~i~~~~~pd~~iLV--l~a~~-g~d~~~~a~~f~~~~-----~~~giIlT 287 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTD---ANLMDELKKIVRVTKPDLVIFV--GDALA-GNDAVEQAREFNEAV-----GIDGVILT 287 (336)
T ss_pred HhCCCCEEEEECCCccCCc---HHHHHHHHHHHHhhCCceEEEe--ecccc-chhHHHHHHHHHhcC-----CCCEEEEe
Confidence 1134579999999986432 3444455544444478999999 44422 111122222222222 45789999
Q ss_pred CCCCCC
Q 026593 161 HAQLCP 166 (236)
Q Consensus 161 k~D~~~ 166 (236)
|.|..+
T Consensus 288 KlD~~~ 293 (336)
T PRK14974 288 KVDADA 293 (336)
T ss_pred eecCCC
Confidence 999863
No 333
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.40 E-value=1.3e-06 Score=72.52 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=52.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC-----CccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGE-----RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA 105 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~ 105 (236)
....++++++|-||+|||||+|++... +.+.++..++.|..............+.++||||..-++..+.+-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~ 216 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVED 216 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHH
Confidence 336799999999999999999987743 344556666666555443333455578999999998887666543
No 334
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.39 E-value=5.1e-06 Score=70.06 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=71.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccc-------ccc-C------------------------cCcccceEEEEee
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVT-------VNS-F------------------------QSEALRPVMVSRS 81 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~-------~~~-~------------------------~~~~~~~~~~~~~ 81 (236)
.+..+|++-+|..--||||||-+|+-..-.. ... . .+.|.....-.+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4577999999999999999999998542100 000 0 0011111111223
Q ss_pred eCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEe
Q 026593 82 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (236)
Q Consensus 82 ~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 160 (236)
-..+++++.||||.. ++.+.|..- ...+|+.+++ +|+.. +-++.++ --.|....|- +++++.+|
T Consensus 83 T~KRkFIiADTPGHe-------QYTRNMaTG--ASTadlAIlL--VDAR~Gvl~QTrR-Hs~I~sLLGI---rhvvvAVN 147 (431)
T COG2895 83 TEKRKFIIADTPGHE-------QYTRNMATG--ASTADLAILL--VDARKGVLEQTRR-HSFIASLLGI---RHVVVAVN 147 (431)
T ss_pred cccceEEEecCCcHH-------HHhhhhhcc--cccccEEEEE--EecchhhHHHhHH-HHHHHHHhCC---cEEEEEEe
Confidence 356789999999984 344433311 1357888888 44422 3332232 2345555555 89999999
Q ss_pred CCCCCC
Q 026593 161 HAQLCP 166 (236)
Q Consensus 161 k~D~~~ 166 (236)
|+|+.+
T Consensus 148 KmDLvd 153 (431)
T COG2895 148 KMDLVD 153 (431)
T ss_pred eecccc
Confidence 999974
No 335
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.36 E-value=2.9e-06 Score=73.37 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.-.++++|++|+||||++..|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999888743
No 336
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.36 E-value=3.3e-06 Score=72.65 Aligned_cols=84 Identities=20% Similarity=0.180 Sum_probs=62.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-----------------eeEEEEeCCCCCCCC-
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAG- 99 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDTPG~~d~~- 99 (236)
+++.++|.|++|||||.|+|++........++.+|..+......+.+ ..+.++|.||+-...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 78999999999999999999999863556667776666554443333 258899999996543
Q ss_pred ---CChHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026593 100 ---YVNYQALELIKGFLLNKTIDVLLYADRL 127 (236)
Q Consensus 100 ---~~~~~~~~~i~~~l~~~~~~~il~v~~~ 127 (236)
......+..++ .+|+++.|.+.
T Consensus 83 ~g~Glgn~fL~~ir------~~d~l~hVvr~ 107 (368)
T TIGR00092 83 KGEGLGNQFLANIR------EVDIIQHVVRC 107 (368)
T ss_pred cccCcchHHHHHHH------hCCEEEEEEeC
Confidence 23345666664 89999999665
No 337
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=1.1e-06 Score=75.56 Aligned_cols=118 Identities=17% Similarity=0.218 Sum_probs=65.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC------Ccccccc--CcCcc-----------cceEEEEee-------------eCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE------RVVTVNS--FQSEA-----------LRPVMVSRS-------------KGG 84 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~------~~~~~~~--~~~~~-----------~~~~~~~~~-------------~~~ 84 (236)
.-.++++|++|+||||++..|... .+..+.. +.... ..+...... ..+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 457899999999999998887632 2211111 11100 000000000 024
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCC
Q 026593 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 164 (236)
..++||||||... .+.+.+.++..+.....++.+++| ++. .... ......+. .|.. ...--+|+||.|.
T Consensus 286 ~D~VLIDTAGr~~---~d~~~l~EL~~l~~~~~p~~~~LV--Lsa-g~~~--~d~~~i~~-~f~~--l~i~glI~TKLDE 354 (407)
T PRK12726 286 VDHILIDTVGRNY---LAEESVSEISAYTDVVHPDLTCFT--FSS-GMKS--ADVMTILP-KLAE--IPIDGFIITKMDE 354 (407)
T ss_pred CCEEEEECCCCCc---cCHHHHHHHHHHhhccCCceEEEE--CCC-cccH--HHHHHHHH-hcCc--CCCCEEEEEcccC
Confidence 6899999999854 334555666665544567887888 543 1222 22333222 2332 2566889999998
Q ss_pred C
Q 026593 165 C 165 (236)
Q Consensus 165 ~ 165 (236)
.
T Consensus 355 T 355 (407)
T PRK12726 355 T 355 (407)
T ss_pred C
Confidence 6
No 338
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.32 E-value=2e-06 Score=69.37 Aligned_cols=104 Identities=21% Similarity=0.375 Sum_probs=70.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHH-HHHHHHHHHhcC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLLNK 116 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~-~~~~i~~~l~~~ 116 (236)
-+++++|-|.+|||||+..+++... ....+..+|..+......++|-++.+.|.||+-+......- -.+.+. -..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQvia---vAr 138 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIA---VAR 138 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEE---Eee
Confidence 6999999999999999999998763 23334556667777778899999999999998765433211 011110 124
Q ss_pred CCcEEEEEEeCCCCCCChHHHHHHHHHHHhhC
Q 026593 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFG 148 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~ 148 (236)
.+|+|+.| +|+.+ ++..+..++.-.+..|
T Consensus 139 taDlilMv--LDatk-~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 139 TADLILMV--LDATK-SEDQREILEKELEAVG 167 (364)
T ss_pred cccEEEEE--ecCCc-chhHHHHHHHHHHHhc
Confidence 78999999 66533 3444556665555555
No 339
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=4.9e-06 Score=70.94 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee------------C------CeeEEEEeCCCCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK------------G------GFTLNIIDTPGLVEA 98 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~------~~~~~liDTPG~~d~ 98 (236)
.+++.++|.|++|||||.|+++... ....++|.+|..+....... . ...+.++|.+|+-..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4789999999999999999999888 46677887777765432211 1 125789999998654
Q ss_pred C----CChHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026593 99 G----YVNYQALELIKGFLLNKTIDVLLYADRL 127 (236)
Q Consensus 99 ~----~~~~~~~~~i~~~l~~~~~~~il~v~~~ 127 (236)
. ....+.+..+| ++|+|+.|++.
T Consensus 81 As~GeGLGNkFL~~IR------evdaI~hVVr~ 107 (372)
T COG0012 81 ASKGEGLGNKFLDNIR------EVDAIIHVVRC 107 (372)
T ss_pred cccCCCcchHHHHhhh------hcCeEEEEEEe
Confidence 3 34567788786 89999999665
No 340
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.28 E-value=6e-06 Score=79.65 Aligned_cols=102 Identities=12% Similarity=0.045 Sum_probs=63.4
Q ss_pred CCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC------------------CeeEEEEeCCCCCCCCCChHHHHHHH
Q 026593 48 VGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG------------------GFTLNIIDTPGLVEAGYVNYQALELI 109 (236)
Q Consensus 48 ~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~liDTPG~~d~~~~~~~~~~~i 109 (236)
++||||+.+|.+.+++. ....+.|+....+....+ -..+.||||||+.++.. +
T Consensus 472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~--------l 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTS--------L 542 (1049)
T ss_pred cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHH--------H
Confidence 34999999999998632 233333433332222222 11389999999744311 1
Q ss_pred HHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 110 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 110 ~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+. .....+|++++|++++. .+.......+..+... ..|+++|+||+|+.
T Consensus 543 r~-~g~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~ 591 (1049)
T PRK14845 543 RK-RGGSLADLAVLVVDINE-GFKPQTIEAINILRQY-----KTPFVVAANKIDLI 591 (1049)
T ss_pred HH-hhcccCCEEEEEEECcc-cCCHhHHHHHHHHHHc-----CCCEEEEEECCCCc
Confidence 11 11246899999977653 3556666666665543 27999999999986
No 341
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.28 E-value=3.5e-06 Score=78.55 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=62.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccc-----cccCcCcccce---------------EEEE-----------eeeCCee
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVT-----VNSFQSEALRP---------------VMVS-----------RSKGGFT 86 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~-----~~~~~~~~~~~---------------~~~~-----------~~~~~~~ 86 (236)
-.++++|++|+||||++..|.+.-... +.-....+... .... ....+.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 478999999999999998888542100 00000000000 0000 0123557
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCcc-ccCcEEEEEeCCCCC
Q 026593 87 LNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ-IWRKSLLVLTHAQLC 165 (236)
Q Consensus 87 ~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~-~~~~~ivv~tk~D~~ 165 (236)
++||||||....+ ....+.+........++-+++| ++... . .+.+..+.+.|... ....-=+|+||.|..
T Consensus 266 ~VLIDTAGRs~~d---~~l~eel~~l~~~~~p~e~~LV--LsAt~-~---~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 266 LVLIDTVGMSQRD---RNVSEQIAMLCGVGRPVRRLLL--LNAAS-H---GDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred EEEEeCCCCCccC---HHHHHHHHHHhccCCCCeEEEE--ECCCC-c---HHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 9999999975433 2344444433333457777888 44322 1 22233333333211 013456889999986
No 342
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.28 E-value=1.9e-06 Score=75.67 Aligned_cols=64 Identities=28% Similarity=0.407 Sum_probs=51.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 101 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~ 101 (236)
++.++|.+||-|++||||+||+|.|.+...++..|+.|...+.... ...+.+.|+||+--+...
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFPSFS 375 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc---CCCceecCCCCccccCCC
Confidence 3458999999999999999999999998888888887766655543 345789999998655543
No 343
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=5.4e-06 Score=80.37 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=84.7
Q ss_pred ccCchhHHHHHHHHHHHHHh--cCCCc-------cEEEEEcCCCCCHHHHHHHH-hCCCccccccCcCcccceEEEEeee
Q 026593 13 QQFPSATQNKLIELLSKLKQ--ENVNT-------LTILVMGKGGVGKSSTVNSV-IGERVVTVNSFQSEALRPVMVSRSK 82 (236)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~--~~~~~-------~~IllvG~~g~GKSSlin~l-~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (236)
.......++...+.++-++. ..++. .=-+|+|++|+||||++..- ............+........+.-+
T Consensus 92 ~~~~~~l~~~~~e~~~~l~r~~~~~~~rr~lyeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdww 171 (1188)
T COG3523 92 DAELEELNAQLGEALRTLKRRKRGRPGRRYLYELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWW 171 (1188)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcCcccchhhcCCceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcc
Confidence 34445555666665555553 22211 23478899999999987442 2222211111111111111111122
Q ss_pred CCeeEEEEeCCCCCCCCCChH--------HHHHHHHHHHhcCCCcEEEEEEeCCC-CCCChHHH-HH-------HHHHHH
Q 026593 83 GGFTLNIIDTPGLVEAGYVNY--------QALELIKGFLLNKTIDVLLYADRLDA-YRVDDLDR-QI-------IKAVTG 145 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~--------~~~~~i~~~l~~~~~~~il~v~~~d~-~~~~~~~~-~~-------l~~l~~ 145 (236)
=+..-++|||.|-+-...... ..+..++++......|+|++..++.. ...+..+. .. +..|.+
T Consensus 172 f~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~ 251 (1188)
T COG3523 172 FTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE 251 (1188)
T ss_pred cccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344568999999765543221 12333344444567999999977632 12333333 11 444555
Q ss_pred hhCccccCcEEEEEeCCCCCCCCCCchHHHHh
Q 026593 146 TFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCS 177 (236)
Q Consensus 146 ~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~ 177 (236)
.++.. .|+++++||.|+.+. +++|..
T Consensus 252 tL~~~--~PVYl~lTk~Dll~G----F~efF~ 277 (1188)
T COG3523 252 TLHAR--LPVYLVLTKADLLPG----FEEFFG 277 (1188)
T ss_pred hhccC--CceEEEEeccccccc----HHHHHh
Confidence 55443 899999999998742 555544
No 344
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.27 E-value=2e-06 Score=75.92 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=64.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC------CCccccccC--cCcc-----------cceEEEEe--------------ee
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG------ERVVTVNSF--QSEA-----------LRPVMVSR--------------SK 82 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~------~~~~~~~~~--~~~~-----------~~~~~~~~--------------~~ 82 (236)
++..|+++|.+|+||||++..|.. ..+..+... .+.. ..+..... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 467899999999999998877652 222111110 0000 00000000 01
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
....++++||||.... +...+++++.......+|.+++|.+.. . . ...+..... |.... ...-+|+||.
T Consensus 174 ~~~DvVIIDTAGr~~~---d~~lm~El~~l~~~~~pdevlLVvda~--~-g---q~av~~a~~-F~~~l-~i~gvIlTKl 242 (437)
T PRK00771 174 KKADVIIVDTAGRHAL---EEDLIEEMKEIKEAVKPDEVLLVIDAT--I-G---QQAKNQAKA-FHEAV-GIGGIIITKL 242 (437)
T ss_pred hcCCEEEEECCCcccc---hHHHHHHHHHHHHHhcccceeEEEecc--c-c---HHHHHHHHH-HHhcC-CCCEEEEecc
Confidence 2347999999997543 345555555544334788899994432 2 1 233333333 32211 3456788999
Q ss_pred CCC
Q 026593 163 QLC 165 (236)
Q Consensus 163 D~~ 165 (236)
|..
T Consensus 243 D~~ 245 (437)
T PRK00771 243 DGT 245 (437)
T ss_pred cCC
Confidence 854
No 345
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=3.1e-06 Score=65.29 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=73.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccc-cCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
...++++++|..|.||++++++.+-....... ...+....+.......+...+.+|||.|+.......+.+ .|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgy--yI---- 81 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGY--YI---- 81 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccccc--EE----
Confidence 35689999999999999999987755532211 111112222222323334689999999997654333221 11
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+..+.++++++.+.-.-.+-.+|-+-+...++. .|+++++||.|.-
T Consensus 82 ---~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 82 ---QGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIK 127 (216)
T ss_pred ---ecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceecc
Confidence 334455555554322223345677777777765 8999999999974
No 346
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.23 E-value=5.7e-06 Score=68.46 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 026593 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 23 ~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~ 58 (236)
..+++..+.........|.+.|.||+|||||+..|.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHH
Confidence 457777777777788999999999999999998877
No 347
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=3.7e-06 Score=73.76 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=62.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcc-----ccccCcCcccceE---------------EE-----------EeeeCCe
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVV-----TVNSFQSEALRPV---------------MV-----------SRSKGGF 85 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~-----~~~~~~~~~~~~~---------------~~-----------~~~~~~~ 85 (236)
.-.++++|++|+||||++..|.+.... .+.-....+.... .. .....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 458999999999999999988753110 0000000000000 00 0112456
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 86 ~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+++|||+|....+ ....+.+..+.....++-.++| ++... . ...+..+...|.. ...-=+|+||.|..
T Consensus 271 d~VLIDTaGrsqrd---~~~~~~l~~l~~~~~~~~~~LV--l~at~-~---~~~~~~~~~~f~~--~~~~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQRD---QMLAEQIAMLSQCGTQVKHLLL--LNATS-S---GDTLDEVISAYQG--HGIHGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCcch---HHHHHHHHHHhccCCCceEEEE--EcCCC-C---HHHHHHHHHHhcC--CCCCEEEEEeeeCC
Confidence 78999999985432 2344444443322345566677 33321 1 2222333344432 15567899999986
Q ss_pred C
Q 026593 166 P 166 (236)
Q Consensus 166 ~ 166 (236)
.
T Consensus 340 ~ 340 (420)
T PRK14721 340 A 340 (420)
T ss_pred C
Confidence 3
No 348
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.18 E-value=8.7e-06 Score=71.97 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=38.0
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh-cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk 161 (236)
.+..++||||||....+ ......+..++. .....-+++|.+.. .. ..-+..+...|..- ..--+|+||
T Consensus 298 ~~~DlVlIDt~G~~~~d---~~~~~~L~~ll~~~~~~~~~~LVl~a~---~~---~~~l~~~~~~f~~~--~~~~vI~TK 366 (424)
T PRK05703 298 RDCDVILIDTAGRSQRD---KRLIEELKALIEFSGEPIDVYLVLSAT---TK---YEDLKDIYKHFSRL--PLDGLIFTK 366 (424)
T ss_pred CCCCEEEEeCCCCCCCC---HHHHHHHHHHHhccCCCCeEEEEEECC---CC---HHHHHHHHHHhCCC--CCCEEEEec
Confidence 35689999999984432 233444444443 22334555553332 11 22233333344321 234689999
Q ss_pred CCCC
Q 026593 162 AQLC 165 (236)
Q Consensus 162 ~D~~ 165 (236)
.|..
T Consensus 367 lDet 370 (424)
T PRK05703 367 LDET 370 (424)
T ss_pred cccc
Confidence 9985
No 349
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=1.9e-06 Score=65.51 Aligned_cols=118 Identities=12% Similarity=0.138 Sum_probs=69.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCc-----cccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERV-----VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELI 109 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i 109 (236)
++.+.++++|.-++|||||+-+.-.... ..++.+. .+......+..+.+..+.+||.-|+. .++.+
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~-~tvgLnig~i~v~~~~l~fwdlgGQe--------~lrSl 85 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKIT-PTVGLNIGTIEVCNAPLSFWDLGGQE--------SLRSL 85 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHee-cccceeecceeeccceeEEEEcCChH--------HHHHH
Confidence 3678999999999999999876543211 1111111 12233445566677889999998873 33333
Q ss_pred HH-HHhcCCCcEEEEEEeCCC-CCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 110 KG-FLLNKTIDVLLYADRLDA-YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 110 ~~-~l~~~~~~~il~v~~~d~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+. +- ..+|+++|+++... .++... ...++.+.+.- .-...|++++.||.|+.
T Consensus 86 w~~yY--~~~H~ii~viDa~~~eR~~~~-~t~~~~v~~~E-~leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 86 WKKYY--WLAHGIIYVIDATDRERFEES-KTAFEKVVENE-KLEGAPVLVLANKQDLQ 139 (197)
T ss_pred HHHHH--HHhceeEEeecCCCHHHHHHH-HHHHHHHHHHH-HhcCCchhhhcchhhhh
Confidence 32 11 26899999955432 334332 22222222211 11128999999999985
No 350
>PRK10867 signal recognition particle protein; Provisional
Probab=98.15 E-value=7.2e-06 Score=72.36 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=38.6
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
+..++|+||||.... ++....++......-.++-+++| +++.. ...-....+.+.+.. ...-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v~p~evllV--lda~~-gq~av~~a~~F~~~~-----~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAVNPDEILLV--VDAMT-GQDAVNTAKAFNEAL-----GLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHhhCCCeEEEE--Eeccc-HHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence 457999999997543 23334444433333367888888 54321 111122233333221 34567889998
Q ss_pred CC
Q 026593 164 LC 165 (236)
Q Consensus 164 ~~ 165 (236)
..
T Consensus 252 ~~ 253 (433)
T PRK10867 252 GD 253 (433)
T ss_pred Cc
Confidence 53
No 351
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=2.9e-06 Score=74.11 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+..++++|++|+||||++..|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999887763
No 352
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=2.6e-05 Score=69.96 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.-.|+|+|++|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999988764
No 353
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.11 E-value=0.0001 Score=57.00 Aligned_cols=72 Identities=18% Similarity=0.110 Sum_probs=41.7
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
+..++++||||.... +......++.+.....++.+++|.+.. .. ....+....+.+.. ...-+|+||.|
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~~~~~~~~~lVv~~~--~~-~~~~~~~~~~~~~~-----~~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKRVVKPDEVLLVVDAM--TG-QDAVNQAKAFNEAL-----GITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHhhcCCCeEEEEEECC--CC-hHHHHHHHHHHhhC-----CCCEEEEECCc
Confidence 556899999997432 334455554444334589999995542 22 22223333333333 24678889999
Q ss_pred CCC
Q 026593 164 LCP 166 (236)
Q Consensus 164 ~~~ 166 (236)
...
T Consensus 151 ~~~ 153 (173)
T cd03115 151 GDA 153 (173)
T ss_pred CCC
Confidence 863
No 354
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=3.1e-05 Score=69.08 Aligned_cols=111 Identities=18% Similarity=0.287 Sum_probs=67.3
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCCCc-cccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHH
Q 026593 32 QENVNTLTILVMGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIK 110 (236)
Q Consensus 32 ~~~~~~~~IllvG~~g~GKSSlin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~ 110 (236)
+...+++-++++|++|+||||||.+|..+-. ...+.+. ..........+.+++..+|. |.. .... +.
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~-----GPiTvvsgK~RRiTflEcp~--Dl~----~miD-va 131 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIR-----GPITVVSGKTRRITFLECPS--DLH----QMID-VA 131 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccC-----CceEEeecceeEEEEEeChH--HHH----HHHh-HH
Confidence 3355678888999999999999999875421 0111111 11112223456889999993 221 1111 11
Q ss_pred HHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 111 GFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 111 ~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.-+|++|+. +|++- |.-...+++..+... ..+.++-|+|+.|+.
T Consensus 132 -----KIaDLVlLl--IdgnfGfEMETmEFLnil~~H----GmPrvlgV~ThlDlf 176 (1077)
T COG5192 132 -----KIADLVLLL--IDGNFGFEMETMEFLNILISH----GMPRVLGVVTHLDLF 176 (1077)
T ss_pred -----HhhheeEEE--eccccCceehHHHHHHHHhhc----CCCceEEEEeecccc
Confidence 247899999 66533 544455565554433 237899999999998
No 355
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.08 E-value=9.1e-06 Score=67.45 Aligned_cols=119 Identities=20% Similarity=0.237 Sum_probs=65.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC------CccccccCcCc--------c----cceEEEE-e-------------eeCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE------RVVTVNSFQSE--------A----LRPVMVS-R-------------SKGG 84 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~------~~~~~~~~~~~--------~----~~~~~~~-~-------------~~~~ 84 (236)
.-+++++|++|+||||++..+.+. .+......... + ....... . ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 369999999999999998877643 11111110000 0 0000000 0 0124
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCC
Q 026593 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 164 (236)
..++++||||....+ .+.++++...+....++-+++| +++..- . ....+.++ .|.. ..+--+++||.|.
T Consensus 155 ~D~ViIDt~Gr~~~~---~~~l~el~~~~~~~~~~~~~LV--l~a~~~-~--~d~~~~~~-~f~~--~~~~~~I~TKlDe 223 (270)
T PRK06731 155 VDYILIDTAGKNYRA---SETVEEMIETMGQVEPDYICLT--LSASMK-S--KDMIEIIT-NFKD--IHIDGIVFTKFDE 223 (270)
T ss_pred CCEEEEECCCCCcCC---HHHHHHHHHHHhhhCCCeEEEE--EcCccC-H--HHHHHHHH-HhCC--CCCCEEEEEeecC
Confidence 689999999985332 3444555555544467788888 443221 1 22223233 2322 2567899999998
Q ss_pred CC
Q 026593 165 CP 166 (236)
Q Consensus 165 ~~ 166 (236)
..
T Consensus 224 t~ 225 (270)
T PRK06731 224 TA 225 (270)
T ss_pred CC
Confidence 63
No 356
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=3.6e-05 Score=67.09 Aligned_cols=119 Identities=16% Similarity=0.221 Sum_probs=61.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC----------CccccccCc--Cc-----------ccceEEEE----------eee
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE----------RVVTVNSFQ--SE-----------ALRPVMVS----------RSK 82 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~----------~~~~~~~~~--~~-----------~~~~~~~~----------~~~ 82 (236)
.+..|+++|++|+||||++..|... .+..+.... .. ...+.... ...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3568999999999999998777621 111111000 00 00000000 012
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCC-CcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT-IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~-~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk 161 (236)
.+..+++|||||.... +...+.++...+.... .+-+++| +++.. ... .+.+.+. .|.. ..+--+++||
T Consensus 253 ~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~~~~e~~LV--lsat~-~~~--~~~~~~~-~~~~--~~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACGRDAEFHLA--VSSTT-KTS--DVKEIFH-QFSP--FSYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcCCCCeEEEE--EcCCC-CHH--HHHHHHH-HhcC--CCCCEEEEEe
Confidence 4568999999998543 2223455555554323 3346677 33322 122 2222333 3221 1466889999
Q ss_pred CCCC
Q 026593 162 AQLC 165 (236)
Q Consensus 162 ~D~~ 165 (236)
.|..
T Consensus 322 lDet 325 (388)
T PRK12723 322 LDET 325 (388)
T ss_pred ccCC
Confidence 9986
No 357
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=1.8e-05 Score=58.51 Aligned_cols=126 Identities=15% Similarity=0.203 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH
Q 026593 24 IELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY 103 (236)
Q Consensus 24 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~ 103 (236)
..+++.++..+ ...+|+++|--|+||+++.-.+--.++....+ +. .-......+.+.++.+||.-|......
T Consensus 6 ~s~f~~L~g~e-~e~rililgldGaGkttIlyrlqvgevvttkP--ti--gfnve~v~yKNLk~~vwdLggqtSirP--- 77 (182)
T KOG0072|consen 6 SSLFKALQGPE-REMRILILGLDGAGKTTILYRLQVGEVVTTKP--TI--GFNVETVPYKNLKFQVWDLGGQTSIRP--- 77 (182)
T ss_pred HHHHHHhcCCc-cceEEEEeeccCCCeeEEEEEcccCcccccCC--CC--CcCccccccccccceeeEccCcccccH---
Confidence 34556666554 67899999999999999765544333222211 11 112234456788899999888744322
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeC-CCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 104 QALELIKGFLLNKTIDVLLYADRL-DAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 104 ~~~~~i~~~l~~~~~~~il~v~~~-d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..|++. ...++++||.+- |..+++.+-..+.-.+.+-.-.. --++++.||.|..
T Consensus 78 ----yWRcYy--~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~~ 132 (182)
T KOG0072|consen 78 ----YWRCYY--ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDYS 132 (182)
T ss_pred ----HHHHHh--cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccch
Confidence 222222 378999999553 44456666555555555533222 5678889999974
No 358
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.00 E-value=1.1e-05 Score=71.20 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=38.6
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
+.+++++||||.... +.....++..+.....++.+++| +++.. ........+.+.+.. ...-+|+||.|
T Consensus 182 ~~DvVIIDTaGr~~~---d~~l~~eL~~i~~~~~p~e~lLV--vda~t-gq~~~~~a~~f~~~v-----~i~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI---DEELMEELAAIKEILNPDEILLV--VDAMT-GQDAVNTAKTFNERL-----GLTGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCcccc---CHHHHHHHHHHHHhhCCceEEEE--Eeccc-hHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence 457999999997543 23344444443333468888999 44422 122222333333222 34567788888
Q ss_pred C
Q 026593 164 L 164 (236)
Q Consensus 164 ~ 164 (236)
.
T Consensus 251 ~ 251 (428)
T TIGR00959 251 G 251 (428)
T ss_pred C
Confidence 4
No 359
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.98 E-value=1.6e-05 Score=60.84 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
-++++|..|+|||||++.+++.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999988855
No 360
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.98 E-value=6.1e-06 Score=70.52 Aligned_cols=72 Identities=26% Similarity=0.332 Sum_probs=53.2
Q ss_pred HHHHHHHHHhc--CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCC
Q 026593 23 LIELLSKLKQE--NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97 (236)
Q Consensus 23 ~~~~~~~~~~~--~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d 97 (236)
+-+++..+... .++.+.+.++|-+++||||+||.|-..++..+.++++.|..-+ +.---+.+.+||+||+.=
T Consensus 291 lI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQ---YItLmkrIfLIDcPGvVy 364 (572)
T KOG2423|consen 291 LIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQ---YITLMKRIFLIDCPGVVY 364 (572)
T ss_pred HHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHH---HHHHHhceeEecCCCccC
Confidence 44445545433 4577999999999999999999999999888888877664332 222235789999999753
No 361
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.96 E-value=3.5e-05 Score=64.78 Aligned_cols=89 Identities=22% Similarity=0.289 Sum_probs=62.7
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee--------------C---CeeEEEEeCCC
Q 026593 32 QENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--------------G---GFTLNIIDTPG 94 (236)
Q Consensus 32 ~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~---~~~~~liDTPG 94 (236)
.+....+++.+||.+++|||||.|+|+..... ..++|.+|..+....... . .-.+.++|..|
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 34446799999999999999999999988764 666777776665332211 1 12589999999
Q ss_pred CCCCCC----ChHHHHHHHHHHHhcCCCcEEEEEEeC
Q 026593 95 LVEAGY----VNYQALELIKGFLLNKTIDVLLYADRL 127 (236)
Q Consensus 95 ~~d~~~----~~~~~~~~i~~~l~~~~~~~il~v~~~ 127 (236)
+-...+ .....++.+| .+|+|+-|...
T Consensus 94 LvkGAs~G~GLGN~FLs~iR------~vDaifhVVr~ 124 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIR------HVDAIFHVVRA 124 (391)
T ss_pred cccCcccCcCchHHHHHhhh------hccceeEEEEe
Confidence 865433 3356666665 77888777443
No 362
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=0.00014 Score=61.46 Aligned_cols=114 Identities=17% Similarity=0.291 Sum_probs=64.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC--ccccccCcCcccceEEEE-----e---------eeCCeeEEEEeCCCCCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER--VVTVNSFQSEALRPVMVS-----R---------SKGGFTLNIIDTPGLVEAG 99 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~--~~~~~~~~~~~~~~~~~~-----~---------~~~~~~~~liDTPG~~d~~ 99 (236)
..+++.++|+..+|||+|..+|.... .+.-....+.+ ...... . .-+...+.++|+||..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~e-RgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa--- 81 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTE-RGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA--- 81 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccc-cceeEeecceeeecccccccCccccceeEEEeCCCcH---
Confidence 45899999999999999999988432 11111111111 111100 0 1123457999999972
Q ss_pred CChHHHHHHHHHHHh-cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 100 YVNYQALELIKGFLL-NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 100 ~~~~~~~~~i~~~l~-~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..||..+. ..-+|..++|+++.... .+.++--++-.+. + ...++|+||.|.++.
T Consensus 82 -------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~--c-----~klvvvinkid~lpE 137 (522)
T KOG0461|consen 82 -------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL--C-----KKLVVVINKIDVLPE 137 (522)
T ss_pred -------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh--c-----cceEEEEeccccccc
Confidence 23444332 23478888885553211 2233333332222 2 678999999998854
No 363
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.93 E-value=9.4e-05 Score=63.69 Aligned_cols=76 Identities=9% Similarity=0.186 Sum_probs=44.4
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC--C-----ChHHHHHHHHHHHhhCcc--c
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR--V-----DDLDRQIIKAVTGTFGKQ--I 151 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~--~-----~~~~~~~l~~l~~~~~~~--~ 151 (236)
.+.+..+.+||..|....+ ..+.. +. .++++|+||.++.... + ...-.+.+..+...+... .
T Consensus 180 ~~~~~~~~~~DvgGqr~~R---~kW~~----~f--~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 180 IVKKLFFRMFDVGGQRSER---KKWIH----CF--DNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred EECCeEEEEEecCCchhhh---hhHHH----Hh--CCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 4456678999999973322 12222 22 5899999997765321 0 011122333344433321 2
Q ss_pred cCcEEEEEeCCCCC
Q 026593 152 WRKSLLVLTHAQLC 165 (236)
Q Consensus 152 ~~~~ivv~tk~D~~ 165 (236)
..|+++++||.|+.
T Consensus 251 ~~piil~~NK~D~~ 264 (342)
T smart00275 251 NTSIILFLNKIDLF 264 (342)
T ss_pred CCcEEEEEecHHhH
Confidence 37999999999975
No 364
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.00022 Score=61.98 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=75.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccc--cCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVN--SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
-|+..|+--.|||||+.+++|.....-. .-.+.|.....+.....+..+.|+|.||..++ .+.+-..+ .
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~-------i~~miag~--~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF-------ISNLLAGL--G 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH-------HHHHHhhh--c
Confidence 4778899999999999999987532221 22334444455555666778999999998543 22222111 4
Q ss_pred CCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.+|..++|++.|. .+..+..+.+..+. .+|. .+.++|+||+|..+
T Consensus 73 ~~d~alLvV~~de-Gl~~qtgEhL~iLd-llgi---~~giivltk~D~~d 117 (447)
T COG3276 73 GIDYALLVVAADE-GLMAQTGEHLLILD-LLGI---KNGIIVLTKADRVD 117 (447)
T ss_pred CCceEEEEEeCcc-CcchhhHHHHHHHH-hcCC---CceEEEEecccccc
Confidence 7899999955532 36555566554444 4554 78899999999873
No 365
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=6.8e-05 Score=65.72 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=68.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccc-----------c---cCcCcccceEEEEeeeC-----CeeEEEEeCCCCCCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTV-----------N---SFQSEALRPVMVSRSKG-----GFTLNIIDTPGLVEAG 99 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~-----~~~~~liDTPG~~d~~ 99 (236)
+.-++.+--.|||||..+|+....... . .-.+.|.+.+.....|. ...+.+|||||.-|+.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 567788899999999999885421110 0 11223444444444332 2468999999999886
Q ss_pred CChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 100 YVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 100 ~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
...... +. .+-+.+++ +|+.. -.+.+.+......+..+ .-++.|+||+|+..+
T Consensus 91 YEVSRS---LA------ACEGalLv--VDAsQ--GveAQTlAN~YlAle~~--LeIiPViNKIDLP~A 143 (603)
T COG0481 91 YEVSRS---LA------ACEGALLV--VDASQ--GVEAQTLANVYLALENN--LEIIPVLNKIDLPAA 143 (603)
T ss_pred EEehhh---Hh------hCCCcEEE--EECcc--chHHHHHHHHHHHHHcC--cEEEEeeecccCCCC
Confidence 533322 22 34556666 34322 23445555544444433 779999999999533
No 366
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.84 E-value=1.9e-05 Score=67.58 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=48.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~ 98 (236)
+..+++.++|-+++||||+||+|.......++..++.|..-+... -+..+.|+|.||+.=.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~---Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK---LDKKIRLLDSPGIVPP 310 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee---ccCCceeccCCceeec
Confidence 467999999999999999999999998877777777665544433 4567899999997533
No 367
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.83 E-value=0.00011 Score=62.74 Aligned_cols=76 Identities=9% Similarity=0.209 Sum_probs=44.4
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC--C-----ChHHHHHHHHHHHhhCcc--c
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR--V-----DDLDRQIIKAVTGTFGKQ--I 151 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~--~-----~~~~~~~l~~l~~~~~~~--~ 151 (236)
.+++..+.+||++|+...+ ..+...+ .++++|+||.++.... + ...-.+.+..+...+... .
T Consensus 157 ~~~~~~~~~~DvgGq~~~R---~kW~~~f------~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 157 TIKNLKFRMFDVGGQRSER---KKWIHCF------EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred EecceEEEEECCCCCcccc---hhHHHHh------CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 4456778999999984322 2222222 5899999997765321 0 111122333333333221 2
Q ss_pred cCcEEEEEeCCCCC
Q 026593 152 WRKSLLVLTHAQLC 165 (236)
Q Consensus 152 ~~~~ivv~tk~D~~ 165 (236)
..|+++++||.|+.
T Consensus 228 ~~pill~~NK~D~f 241 (317)
T cd00066 228 NTSIILFLNKKDLF 241 (317)
T ss_pred CCCEEEEccChHHH
Confidence 37999999999975
No 368
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00018 Score=60.23 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=68.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccc-------------------cCcCccc-ceE--EEEee------eCCeeE
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVN-------------------SFQSEAL-RPV--MVSRS------KGGFTL 87 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~-------------------~~~~~~~-~~~--~~~~~------~~~~~~ 87 (236)
+.++|.++|+...|||||..+|+|.-....+ ..+.+.. .++ ...+. .--+.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 5689999999999999999999987211111 0111100 000 00000 012468
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhc-CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 88 NIIDTPGLVEAGYVNYQALELIKGFLLN-KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 88 ~liDTPG~~d~~~~~~~~~~~i~~~l~~-~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
-|+|.||. +.+ +...++- .--|+.++|...+....+++..+.+-.|. ..|- ++++++-||+|+.
T Consensus 89 SfVDaPGH--------e~L--MATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iigi---k~iiIvQNKIDlV 153 (415)
T COG5257 89 SFVDAPGH--------ETL--MATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIGI---KNIIIVQNKIDLV 153 (415)
T ss_pred EEeeCCch--------HHH--HHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhcc---ceEEEEeccccee
Confidence 89999997 222 2222321 12477788855554445555555554443 3343 8999999999997
No 369
>PRK01889 GTPase RsgA; Reviewed
Probab=97.82 E-value=2e-05 Score=68.25 Aligned_cols=61 Identities=30% Similarity=0.427 Sum_probs=36.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcc-----cceEEEEeeeCCeeEEEEeCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEA-----LRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~liDTPG~~d~~ 99 (236)
-+++++|.+|+|||||+|.|+|.....++.+.... ...........+ ...++||||+....
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~-~~~l~DtpG~~~~~ 261 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPS-GGLLIDTPGMRELQ 261 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecC-CCeecCCCchhhhc
Confidence 48999999999999999999987544333222111 001111111121 23588999996544
No 370
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=6.5e-05 Score=60.45 Aligned_cols=117 Identities=16% Similarity=0.124 Sum_probs=68.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~ 117 (236)
.+|+++|.-.+||||+-...+..-....--+...|......+..-.=.++.+||-||+.++....-+....+ .+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF------~~ 101 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIF------RG 101 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHH------hc
Confidence 569999999999999877665432111111222232322222222234788999999987654333333344 38
Q ss_pred CcEEEEEEeCCCCCCChHHHHHHHHHHHhh----CccccCcEEEEEeCCCCC
Q 026593 118 IDVLLYADRLDAYRVDDLDRQIIKAVTGTF----GKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 118 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~----~~~~~~~~ivv~tk~D~~ 165 (236)
.-+++|| +|+. +.-.+.+..+...+ .-+...++=+.+.|+|..
T Consensus 102 ~gALifv--IDaQ---ddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 102 VGALIFV--IDAQ---DDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred cCeEEEE--Eech---HHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 8999999 5542 22233344433333 234446778899999987
No 371
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.81 E-value=9.6e-05 Score=55.37 Aligned_cols=115 Identities=19% Similarity=0.120 Sum_probs=68.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceE--EEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV--MVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
-.++|.++|++..|||||.-...+....... ......... .....-....+-+||.-|..++. ..+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~-~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~-----------n~l 86 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEY-TQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFI-----------NML 86 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHH-HHHhCccceeeEEEecceEEEEEEEecCCcHhhh-----------ccC
Confidence 4589999999999999999888876532111 000011111 12222233467899999874321 111
Q ss_pred --hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 --LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 --~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...++-+|+|++++.+.. + .....++.++..+.+..---++|+||-|+.
T Consensus 87 Piac~dsvaIlFmFDLt~r~-T--LnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 87 PIACKDSVAILFMFDLTRRS-T--LNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred ceeecCcEEEEEEEecCchH-H--HHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 124788999998876522 1 234556666666644333347889999875
No 372
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00017 Score=60.83 Aligned_cols=138 Identities=10% Similarity=0.141 Sum_probs=79.3
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCC-------Cc---cccccCc-----CcccceEEEEeeeCCeeEEEEeCCCCC
Q 026593 32 QENVNTLTILVMGKGGVGKSSTVNSVIGE-------RV---VTVNSFQ-----SEALRPVMVSRSKGGFTLNIIDTPGLV 96 (236)
Q Consensus 32 ~~~~~~~~IllvG~~g~GKSSlin~l~~~-------~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~liDTPG~~ 96 (236)
.+.++.++|.-+|+...|||||..+|+.. +. ......| +.|.......++-..+.+-=+|+||..
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 45678899999999999999999988732 11 0011111 122222233344456778889999985
Q ss_pred CCCCChHHHHHHHHHHHh-cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHH
Q 026593 97 EAGYVNYQALELIKGFLL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVY 175 (236)
Q Consensus 97 d~~~~~~~~~~~i~~~l~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~ 175 (236)
|+ ++..++ ...-|+.++|.....-.+.+ .++.+- |.+..|- .++++.+||+|+. ++....+.
T Consensus 129 DY----------IKNMItGaaqMDGaILVVaatDG~MPQ-TrEHlL-LArQVGV---~~ivvfiNKvD~V--~d~e~leL 191 (449)
T KOG0460|consen 129 DY----------IKNMITGAAQMDGAILVVAATDGPMPQ-TREHLL-LARQVGV---KHIVVFINKVDLV--DDPEMLEL 191 (449)
T ss_pred HH----------HHHhhcCccccCceEEEEEcCCCCCcc-hHHHHH-HHHHcCC---ceEEEEEeccccc--CCHHHHHH
Confidence 43 333332 13457777775543223332 344332 3334454 7899999999997 23334444
Q ss_pred HhhchHHHHHHHHh
Q 026593 176 CSKRSDALLKTIRL 189 (236)
Q Consensus 176 ~~~~~~~l~~~i~~ 189 (236)
++ -.+++++..
T Consensus 192 VE---mE~RElLse 202 (449)
T KOG0460|consen 192 VE---MEIRELLSE 202 (449)
T ss_pred HH---HHHHHHHHH
Confidence 33 345566554
No 373
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.80 E-value=4e-05 Score=68.41 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
--++++|++|+||||++..|.+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999888853
No 374
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00014 Score=63.76 Aligned_cols=126 Identities=20% Similarity=0.303 Sum_probs=68.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC----C--ccccc--cCcCcccce--------------E---------------
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGE----R--VVTVN--SFQSEALRP--------------V--------------- 76 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~----~--~~~~~--~~~~~~~~~--------------~--------------- 76 (236)
.+.|+.|.++|-.|+||||-+..|+-. + +.... .+.++.... .
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~v 454 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGV 454 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHH
Confidence 448899999999999999987776622 1 11100 011100000 0
Q ss_pred ----EEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCcccc
Q 026593 77 ----MVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIW 152 (236)
Q Consensus 77 ----~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~ 152 (236)
......+|.+++++||.|-... +...+..+..++....||.|+|| -.+--=++. ..-+..+.+.++....
T Consensus 455 ak~AI~~a~~~gfDVvLiDTAGR~~~---~~~lm~~l~k~~~~~~pd~i~~v--gealvg~ds-v~q~~~fn~al~~~~~ 528 (587)
T KOG0781|consen 455 AKEAIQEARNQGFDVVLIDTAGRMHN---NAPLMTSLAKLIKVNKPDLILFV--GEALVGNDS-VDQLKKFNRALADHST 528 (587)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccC---ChhHHHHHHHHHhcCCCceEEEe--hhhhhCcHH-HHHHHHHHHHHhcCCC
Confidence 0001124678999999996433 23455566666677899999999 322111121 2222333333332221
Q ss_pred Cc--EEEEEeCCCCC
Q 026593 153 RK--SLLVLTHAQLC 165 (236)
Q Consensus 153 ~~--~ivv~tk~D~~ 165 (236)
++ =-+++||+|-.
T Consensus 529 ~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 529 PRLIDGILLTKFDTV 543 (587)
T ss_pred ccccceEEEEeccch
Confidence 22 25788999964
No 375
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00015 Score=66.59 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=70.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEee------------------eCCeeEEEEeCCCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS------------------KGGFTLNIIDTPGLVE 97 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~liDTPG~~d 97 (236)
...-+.++|+...|||-|+..+-+.++.. +...+.|++.....+. +.--.+.+|||||...
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqe-geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQE-GEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccc-ccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 34568889999999999999999887532 2222222222111110 1112478999999743
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 98 ~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+ ..+|.. -..-+|..|+|+++-. .+.++..+.+..|+... .|+||.+||+|..
T Consensus 553 F--------tnlRsr-gsslC~~aIlvvdImh-GlepqtiESi~lLR~rk-----tpFivALNKiDRL 605 (1064)
T KOG1144|consen 553 F--------TNLRSR-GSSLCDLAILVVDIMH-GLEPQTIESINLLRMRK-----TPFIVALNKIDRL 605 (1064)
T ss_pred h--------hhhhhc-cccccceEEEEeehhc-cCCcchhHHHHHHHhcC-----CCeEEeehhhhhh
Confidence 3 222211 0135789999966532 26555566666666543 8999999999853
No 376
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.73 E-value=5.5e-05 Score=59.67 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=45.3
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCc-EEEEEEeCCCCCCChHHHHH---HHHHHHhhCccccCcEEEEEe
Q 026593 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID-VLLYADRLDAYRVDDLDRQI---IKAVTGTFGKQIWRKSLLVLT 160 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~-~il~v~~~d~~~~~~~~~~~---l~~l~~~~~~~~~~~~ivv~t 160 (236)
..+.++|+||+-+-.... .++..+-+++..-.++ ..+|+ +++.-+.+..+.+ +..+.....-+ .|.|=|++
T Consensus 98 ddylifDcPGQIELytH~-pVm~~iv~hl~~~~F~~c~Vyl--ldsqf~vD~~KfiSG~lsAlsAMi~lE--~P~INvls 172 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHL-PVMPQIVEHLKQWNFNVCVVYL--LDSQFLVDSTKFISGCLSALSAMISLE--VPHINVLS 172 (273)
T ss_pred CCEEEEeCCCeeEEeecC-hhHHHHHHHHhcccCceeEEEE--eccchhhhHHHHHHHHHHHHHHHHHhc--Ccchhhhh
Confidence 368999999986644333 2344444555332222 22333 4542233333332 23333332222 78899999
Q ss_pred CCCCCCCC-CCchHHHHh
Q 026593 161 HAQLCPPD-GLNYDVYCS 177 (236)
Q Consensus 161 k~D~~~~~-~~~~~~~~~ 177 (236)
|.|+.... +..+++|+.
T Consensus 173 KMDLlk~~~k~~l~~Fl~ 190 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLN 190 (273)
T ss_pred HHHHhhhhhHHHHHHhcC
Confidence 99997332 234445544
No 377
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=7e-06 Score=70.62 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=87.2
Q ss_pred cccccccccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccc-----------cc------
Q 026593 4 LLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVT-----------VN------ 66 (236)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~-----------~~------ 66 (236)
+...-+..-++++..+.++++.+-.-......+--+|.++..-.+||||...+++-...+. +.
T Consensus 4 ~~l~lgrnc~s~pgligndikslhs~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~e 83 (753)
T KOG0464|consen 4 LHLLLGRNCSSLPGLIGNDIKSLHSIINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIE 83 (753)
T ss_pred cceecccccccCcccccccchhccCCCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHH
Confidence 3333444556666666665544433332222233589999999999999998877332111 10
Q ss_pred cCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHh
Q 026593 67 SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT 146 (236)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~ 146 (236)
.-.+.+.+.....+.|.|..+.+|||||..|+....+...+ -.|+++.|++..+ ....+ .+..-++
T Consensus 84 rergitiqsaav~fdwkg~rinlidtpghvdf~leverclr---------vldgavav~dasa-gve~q---tltvwrq- 149 (753)
T KOG0464|consen 84 RERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLR---------VLDGAVAVFDASA-GVEAQ---TLTVWRQ- 149 (753)
T ss_pred HhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHH---------HhcCeEEEEeccC-Ccccc---eeeeehh-
Confidence 11223444556677899999999999999988765544333 4578888854432 12222 2211111
Q ss_pred hCccccCcEEEEEeCCCCC
Q 026593 147 FGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 147 ~~~~~~~~~ivv~tk~D~~ 165 (236)
...+..|-+..+||+|..
T Consensus 150 -adk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 150 -ADKFKIPAHCFINKMDKL 167 (753)
T ss_pred -ccccCCchhhhhhhhhhh
Confidence 123348888889999975
No 378
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.69 E-value=8.5e-05 Score=64.61 Aligned_cols=141 Identities=23% Similarity=0.321 Sum_probs=77.0
Q ss_pred ccCchhHHHHHHHHHHH-HHhc---CCCccEEEEEcCCCCCHHHHHHHHhC------CCcccccc--CcC----------
Q 026593 13 QQFPSATQNKLIELLSK-LKQE---NVNTLTILVMGKGGVGKSSTVNSVIG------ERVVTVNS--FQS---------- 70 (236)
Q Consensus 13 ~~l~~~~~~~~~~~~~~-~~~~---~~~~~~IllvG~~g~GKSSlin~l~~------~~~~~~~~--~~~---------- 70 (236)
+.++.-..++|.+++.. -.+. .++|..|+++|--|+||||.+..|.. .++.-++. +.+
T Consensus 72 q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La 151 (451)
T COG0541 72 QQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLA 151 (451)
T ss_pred HHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHH
Confidence 34556667777777764 1111 33578999999999999998776652 22111110 000
Q ss_pred ----------cc-cceE------EEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCC
Q 026593 71 ----------EA-LRPV------MVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVD 133 (236)
Q Consensus 71 ----------~~-~~~~------~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~ 133 (236)
.+ ..+. .......+.+++|+||.|-.. .+++.+.+++..-..-.||=+++| +|+..=+
T Consensus 152 ~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~---ide~Lm~El~~Ik~~~~P~E~llV--vDam~GQ 226 (451)
T COG0541 152 EQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLH---IDEELMDELKEIKEVINPDETLLV--VDAMIGQ 226 (451)
T ss_pred HHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc---ccHHHHHHHHHHHhhcCCCeEEEE--Eecccch
Confidence 00 0000 000111345799999999643 355666666665555689999999 6542222
Q ss_pred hHHHHHHHHHHHhhCccccCcEEEEEeCCCC
Q 026593 134 DLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (236)
Q Consensus 134 ~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 164 (236)
++ ...-+.+.+.. .-.=+|+||.|.
T Consensus 227 dA-~~~A~aF~e~l-----~itGvIlTKlDG 251 (451)
T COG0541 227 DA-VNTAKAFNEAL-----GITGVILTKLDG 251 (451)
T ss_pred HH-HHHHHHHhhhc-----CCceEEEEcccC
Confidence 22 22223333332 233456666664
No 379
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.00019 Score=60.56 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=64.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC------Ccccccc--Cc--------------Cc-------ccceE------EEE
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGE------RVVTVNS--FQ--------------SE-------ALRPV------MVS 79 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~------~~~~~~~--~~--------------~~-------~~~~~------~~~ 79 (236)
..++-|+++|-.|+||||.|..|... .+..... +. +. ...+. ...
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 35899999999999999999887732 1110000 00 00 00000 000
Q ss_pred eeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh---cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEE
Q 026593 80 RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL 156 (236)
Q Consensus 80 ~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~---~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i 156 (236)
..-.+.+++++||.|-......--+-++.+.+.+. ...||-++++ +|+..=+.. ..-.+.+.+.. .-.-
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llv--lDAttGqna-l~QAk~F~eav-----~l~G 288 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLV--LDATTGQNA-LSQAKIFNEAV-----GLDG 288 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEE--EEcccChhH-HHHHHHHHHhc-----CCce
Confidence 11246689999999976554322222333333331 1346778888 554221111 22223333333 3456
Q ss_pred EEEeCCCCC
Q 026593 157 LVLTHAQLC 165 (236)
Q Consensus 157 vv~tk~D~~ 165 (236)
+++||.|..
T Consensus 289 iIlTKlDgt 297 (340)
T COG0552 289 IILTKLDGT 297 (340)
T ss_pred EEEEecccC
Confidence 889999964
No 380
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.67 E-value=0.00025 Score=60.78 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=79.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccc------------cCcC-cccce--EEEEe------------------
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVN------------SFQS-EALRP--VMVSR------------------ 80 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~------------~~~~-~~~~~--~~~~~------------------ 80 (236)
....+.+.++|...+|||||+-.|.-.+.-..+ .... -+... ..+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 445688999999999999998876632210000 0000 00000 00000
Q ss_pred ---eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEE
Q 026593 81 ---SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLL 157 (236)
Q Consensus 81 ---~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~iv 157 (236)
.-.++-+.++||-|.. .+++...+-+..+++|..+++.-.|. ..+...++.+-.+...- .|+++
T Consensus 194 ~vv~~aDklVsfVDtvGHE-------pwLrTtirGL~gqk~dYglLvVaAdd-G~~~~tkEHLgi~~a~~-----lPviV 260 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHE-------PWLRTTIRGLLGQKVDYGLLVVAADD-GVTKMTKEHLGIALAME-----LPVIV 260 (527)
T ss_pred HhhhhcccEEEEEecCCcc-------HHHHHHHHHHhccccceEEEEEEccC-CcchhhhHhhhhhhhhc-----CCEEE
Confidence 1123457899999873 34444434444578999999965543 24444455554444432 89999
Q ss_pred EEeCCCCCCCCCCchHHHHhhchHHHHHHHHhhccC
Q 026593 158 VLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGL 193 (236)
Q Consensus 158 v~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 193 (236)
++||+|..+ ++.++...+.+..+++..+|.
T Consensus 261 vvTK~D~~~------ddr~~~v~~ei~~~Lk~v~Ri 290 (527)
T COG5258 261 VVTKIDMVP------DDRFQGVVEEISALLKRVGRI 290 (527)
T ss_pred EEEecccCc------HHHHHHHHHHHHHHHHHhccc
Confidence 999999973 222222234455555555553
No 381
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00027 Score=65.14 Aligned_cols=113 Identities=18% Similarity=0.181 Sum_probs=66.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcC---------------cccceEEEEeeeCCeeEEEEeCCCCCCCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS---------------EALRPVMVSRSKGGFTLNIIDTPGLVEAGYV 101 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~ 101 (236)
--++.++.+...|||||+.+|...+....+...+ .|.+...-.....+..+.+||+||.-|+...
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 3578999999999999999988665433221111 1111111122336778999999999888643
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCC
Q 026593 102 NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (236)
Q Consensus 102 ~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 164 (236)
...+. .-.|..++..++-. ....+....+++..... ...++|+||+|.
T Consensus 89 vssas---------~l~d~alvlvdvve-gv~~qt~~vlrq~~~~~-----~~~~lvinkidr 136 (887)
T KOG0467|consen 89 VSSAS---------RLSDGALVLVDVVE-GVCSQTYAVLRQAWIEG-----LKPILVINKIDR 136 (887)
T ss_pred hhhhh---------hhcCCcEEEEeecc-ccchhHHHHHHHHHHcc-----CceEEEEehhhh
Confidence 32221 14566666644321 23333344444322221 678999999994
No 382
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.64 E-value=0.00064 Score=51.38 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 026593 40 ILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~ 59 (236)
+.++|+.|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999888763
No 383
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00018 Score=61.64 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=31.4
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDA 129 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~ 129 (236)
++..++|+||.|-.. .....+.+++++...-.||-+||| +|+
T Consensus 182 e~fdvIIvDTSGRh~---qe~sLfeEM~~v~~ai~Pd~vi~V--mDa 223 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHK---QEASLFEEMKQVSKAIKPDEIIFV--MDA 223 (483)
T ss_pred cCCcEEEEeCCCchh---hhHHHHHHHHHHHhhcCCCeEEEE--Eec
Confidence 356799999999643 344667777777666789999999 554
No 384
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.60 E-value=7.7e-05 Score=59.76 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHh------CCCccccccCcC
Q 026593 38 LTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQS 70 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~------~~~~~~~~~~~~ 70 (236)
+-.+++|+||+||||..+.+. |+.+..++-.|.
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPa 41 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPA 41 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCc
Confidence 446899999999999887654 565555554444
No 385
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.58 E-value=0.0015 Score=55.89 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=45.4
Q ss_pred EEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC-CChHH--HH----HHHHHHHhhCcc
Q 026593 78 VSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR-VDDLD--RQ----IIKAVTGTFGKQ 150 (236)
Q Consensus 78 ~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~~--~~----~l~~l~~~~~~~ 150 (236)
....+.+..+.++|.+|+-. ...++. +|. .++++||||.++.... ....| .. .++.+...+-..
T Consensus 188 ~~F~~k~~~f~~~DvGGQRs---eRrKWi----hcF--e~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 188 VEFTIKGLKFRMFDVGGQRS---ERKKWI----HCF--EDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred EEEEeCCCceEEEeCCCcHH---HhhhHH----Hhh--cCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 34456677899999999621 111222 222 6999999998875443 11111 11 122222222211
Q ss_pred --ccCcEEEEEeCCCCC
Q 026593 151 --IWRKSLLVLTHAQLC 165 (236)
Q Consensus 151 --~~~~~ivv~tk~D~~ 165 (236)
...++|+.+||.|+.
T Consensus 259 ~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLF 275 (354)
T ss_pred ccccCcEEEEeecHHHH
Confidence 227899999999986
No 386
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.57 E-value=0.00085 Score=60.26 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=67.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEee--eCCeeEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS--KGGFTLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
.++=++..++|+.++|||.++++++|+.... +............... -....+++-|.+-. +.+.....
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k------- 492 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK------- 492 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc-------
Confidence 3355899999999999999999999987544 2222211111111111 22335666665543 22222211
Q ss_pred HHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+..+|+++++++....+. ...+..+.+........|+++|.+|+|+-
T Consensus 493 ---e~~cDv~~~~YDsS~p~s----f~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 493 ---EAACDVACLVYDSSNPRS----FEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred ---cceeeeEEEecccCCchH----HHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 026899999977653321 22223333332222459999999999984
No 387
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.54 E-value=0.002 Score=48.02 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=55.3
Q ss_pred EEEcCCCCCHHHHHHHHhC------CCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 41 LVMGKGGVGKSSTVNSVIG------ERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 41 llvG~~g~GKSSlin~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
+..|+.|+|||++.-.+.. ..+..+...+..... ...++++|||+..+ +.....+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---------~yd~VIiD~p~~~~-----~~~~~~l----- 64 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---------DYDYIIIDTGAGIS-----DNVLDFF----- 64 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---------CCCEEEEECCCCCC-----HHHHHHH-----
Confidence 4568999999998655542 222222211111111 16789999997532 1222223
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 164 (236)
..+|.++++...+...+.. -...++.+.+..+ ..++.+|+|+++.
T Consensus 65 -~~aD~vviv~~~~~~s~~~-~~~~l~~l~~~~~---~~~~~lVvN~~~~ 109 (139)
T cd02038 65 -LAADEVIVVTTPEPTSITD-AYALIKKLAKQLR---VLNFRVVVNRAES 109 (139)
T ss_pred -HhCCeEEEEcCCChhHHHH-HHHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence 3789999994443222211 1345555554332 2678899999964
No 388
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.53 E-value=5.6e-05 Score=58.98 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=37.0
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
+..+.+|.+.|..++.... .....+. ..-..+.++.| +|..++... ...-..+..... .-=++|+||+|
T Consensus 84 ~~d~IiIE~sG~a~p~~l~-~~~~~~~---~~~~~~~iI~v--VDa~~~~~~-~~~~~~~~~Qi~----~ADvIvlnK~D 152 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLI-LQDPPLK---EDFRLDSIITV--VDATNFDEL-ENIPELLREQIA----FADVIVLNKID 152 (178)
T ss_dssp C-SEEEEEEECSSGGGGHH-HHSHHHH---HHESESEEEEE--EEGTTHGGH-TTHCHHHHHHHC----T-SEEEEE-GG
T ss_pred CcCEEEECCccccccchhh-hcccccc---ccccccceeEE--ecccccccc-ccchhhhhhcch----hcCEEEEeccc
Confidence 3478999999987765441 0011111 12367888888 454344221 122222222221 23389999999
Q ss_pred CC
Q 026593 164 LC 165 (236)
Q Consensus 164 ~~ 165 (236)
+.
T Consensus 153 ~~ 154 (178)
T PF02492_consen 153 LV 154 (178)
T ss_dssp GH
T ss_pred cC
Confidence 86
No 389
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.53 E-value=0.00055 Score=49.95 Aligned_cols=100 Identities=16% Similarity=0.291 Sum_probs=53.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH---hcC
Q 026593 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL---LNK 116 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l---~~~ 116 (236)
|++.|++|+|||+++..+...-. ..+.-+|.+-+.+.. ..+..+.++..+ ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----------------------~~~~~i~~~~~~~~~--~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----------------------FPFIEIDGSELISSY--AGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----------------------SEEEEEETTHHHTSS--TTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----------------------ccccccccccccccc--cccccccccccccccccc
Confidence 68999999999999999885431 123445555543221 112222233322 112
Q ss_pred CCcEEEEEEeCCCCC------CChHHHHHHHHHHHhhCcccc--CcEEEEEeCCC
Q 026593 117 TIDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIW--RKSLLVLTHAQ 163 (236)
Q Consensus 117 ~~~~il~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~--~~~ivv~tk~D 163 (236)
....|+++.++|.-. ........+..+...+..... .++++|+|-.+
T Consensus 57 ~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 57 AKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp STSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 225888887765321 122234555666655543322 35666666544
No 390
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.50 E-value=0.00048 Score=49.63 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
++++++|..|+|||+++.++....
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~ 24 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFP 24 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCC
Confidence 489999999999999999985444
No 391
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.47 E-value=0.0027 Score=53.99 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=39.0
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 87 LNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 87 ~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
-.+|||+|+-+.. -...+-+++..-++|+++++ + +.++...+++.++...+. -++.+.|.+..
T Consensus 214 G~iInT~g~i~~e-----gy~~llhai~~f~v~vviVL---g-------~ErLy~~lkk~~~~~~~v-~vv~lpKsgGv 276 (415)
T KOG2749|consen 214 GCIINTCGWIEGE-----GYAALLHAIKAFEVDVVIVL---G-------QERLYSSLKKDLPPKKNV-RVVKLPKSGGV 276 (415)
T ss_pred ceEEeccceeccc-----cHHHHHHHHHHcCccEEEEe---c-------cHHHHHHHHhhccccccc-eEEEecCCCCe
Confidence 4789999986632 12223334444588988887 2 126667777777754333 35566787776
No 392
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.40 E-value=0.0025 Score=51.90 Aligned_cols=42 Identities=29% Similarity=0.451 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 19 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+..+.+-.+.+- .+.+..++++.|..|+||||++.+++..-
T Consensus 35 Qk~~l~~Nt~~Fl-~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 35 QKEALIENTEQFL-QGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHHHHHHHHHHHH-cCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 3344444444443 34578899999999999999999998543
No 393
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00047 Score=58.92 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=71.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccc------------cccCcCcccceEEE------------Ee----------ee
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVT------------VNSFQSEALRPVMV------------SR----------SK 82 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~------------~~~~~~~~~~~~~~------------~~----------~~ 82 (236)
.++++++|...+|||||+-.|+...... ...+.+..+.+... .+ +.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 4899999999999999999888552111 11111111111100 00 01
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
...-++++|..|...+. +.....+...-||..+++.+.+. .++...++.+-.+.... .|+++++||+
T Consensus 247 SSKlvTfiDLAGh~kY~-------~TTi~gLtgY~Ph~A~LvVsA~~-Gi~~tTrEHLgl~~AL~-----iPfFvlvtK~ 313 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQ-------KTTIHGLTGYTPHFACLVVSADR-GITWTTREHLGLIAALN-----IPFFVLVTKM 313 (591)
T ss_pred hcceEEEeecccchhhh-------eeeeeecccCCCceEEEEEEcCC-CCccccHHHHHHHHHhC-----CCeEEEEEee
Confidence 12358899988874332 11122233356899999966654 35555566666666553 8999999999
Q ss_pred CCCCC
Q 026593 163 QLCPP 167 (236)
Q Consensus 163 D~~~~ 167 (236)
|+.++
T Consensus 314 Dl~~~ 318 (591)
T KOG1143|consen 314 DLVDR 318 (591)
T ss_pred ccccc
Confidence 99854
No 394
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.35 E-value=0.0033 Score=54.87 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 25 ELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 25 ~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
++.+++.++-...+.|.+||+..+||||||.++...
T Consensus 5 ~iykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 5 DIYKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred hHHHHHHHhcCCceEEEeecCcccCchhHHHHHHHH
Confidence 445566666667899999999999999999998743
No 395
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.35 E-value=0.003 Score=56.64 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERV 62 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~ 62 (236)
--+++.|++||||||.+..|+..-.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhC
Confidence 3578899999999999998886544
No 396
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.34 E-value=0.0056 Score=47.18 Aligned_cols=109 Identities=18% Similarity=0.216 Sum_probs=55.6
Q ss_pred EEEcCCCCCHHHHHHHHh------CCCccccccCcCcccceEE---------EEeeeCCeeEEEEeCCCCCCCCCChHHH
Q 026593 41 LVMGKGGVGKSSTVNSVI------GERVVTVNSFQSEALRPVM---------VSRSKGGFTLNIIDTPGLVEAGYVNYQA 105 (236)
Q Consensus 41 llvG~~g~GKSSlin~l~------~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~liDTPG~~d~~~~~~~~ 105 (236)
+.-++.|+||||+.-.|. |.++..+...+........ .....-...++++|||+..+. ..
T Consensus 4 v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~-----~~ 78 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER-----GF 78 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH-----HH
Confidence 455799999999875554 3333333222110000000 000011117999999975332 22
Q ss_pred HHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 106 LELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 106 ~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+ ..+|.++++...+...+... ..+++.+.+. + .....+|+|+++..
T Consensus 79 ~~~l------~~ad~viiv~~~~~~s~~~~-~~~~~~~~~~-~---~~~~~iv~N~~~~~ 127 (179)
T cd02036 79 ITAI------APADEALLVTTPEISSLRDA-DRVKGLLEAL-G---IKVVGVIVNRVRPD 127 (179)
T ss_pred HHHH------HhCCcEEEEeCCCcchHHHH-HHHHHHHHHc-C---CceEEEEEeCCccc
Confidence 2222 26888999854443222221 2344555442 1 15678999999864
No 397
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.31 E-value=0.007 Score=46.92 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=39.6
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
....++++|||+.... .....+ ..+|.++++...+...+.. -.++++.+.+. + .++.+|+|++
T Consensus 91 ~~~d~viiDtpp~~~~-----~~~~~l------~~aD~vliv~~~~~~~~~~-~~~~~~~l~~~-~----~~~~vV~N~~ 153 (179)
T cd03110 91 EGAELIIIDGPPGIGC-----PVIASL------TGADAALLVTEPTPSGLHD-LERAVELVRHF-G----IPVGVVINKY 153 (179)
T ss_pred cCCCEEEEECcCCCcH-----HHHHHH------HcCCEEEEEecCCcccHHH-HHHHHHHHHHc-C----CCEEEEEeCC
Confidence 4568999999965321 222222 3789999995554322221 23444544432 2 5688999999
Q ss_pred CCC
Q 026593 163 QLC 165 (236)
Q Consensus 163 D~~ 165 (236)
|..
T Consensus 154 ~~~ 156 (179)
T cd03110 154 DLN 156 (179)
T ss_pred CCC
Confidence 864
No 398
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.30 E-value=0.00025 Score=57.75 Aligned_cols=119 Identities=18% Similarity=0.286 Sum_probs=75.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHH-HHHHHHHHhcC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIKGFLLNK 116 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~-~~~i~~~l~~~ 116 (236)
-++-++|.|.+||||++..++|... .+..+..++-.+......+++-++.+.|.||+-+......-. .+.+. -..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia---var 135 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA---VAR 135 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEE---Eee
Confidence 3889999999999999999998763 333333444444445556788899999999997654322110 11110 114
Q ss_pred CCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCcccc-CcEEEEEeCCC
Q 026593 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIW-RKSLLVLTHAQ 163 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~-~~~ivv~tk~D 163 (236)
.++.|++| +|... .-..+++++.-.+.||-..+ .|--+.+.|-|
T Consensus 136 tcnli~~v--ld~~k-p~~hk~~ie~eleg~girlnk~pp~i~~kkKd 180 (358)
T KOG1487|consen 136 TCNLIFIV--LDVLK-PLSHKKIIEKELEGFGIRLNKQPPNIGTKKKD 180 (358)
T ss_pred cccEEEEE--eeccC-cccHHHHHHHhhhcceeeccCCCCCccccccc
Confidence 68899999 44323 23357888888888873321 34444455554
No 399
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.25 E-value=0.0068 Score=41.28 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=39.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCc
Q 026593 40 ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTID 119 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~ 119 (236)
+++.|..|+|||++...+...-... . . ..... + .+.++|+|+..+..... ..... ..+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~--g-----~--~v~~~--~--d~iivD~~~~~~~~~~~--~~~~~------~~~~ 60 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR--G-----K--RVLLI--D--DYVLIDTPPGLGLLVLL--CLLAL------LAAD 60 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--C-----C--eEEEE--C--CEEEEeCCCCccchhhh--hhhhh------hhCC
Confidence 6788999999999988776432100 0 0 00000 1 78999999875543210 01111 3678
Q ss_pred EEEEEEeCC
Q 026593 120 VLLYADRLD 128 (236)
Q Consensus 120 ~il~v~~~d 128 (236)
.++++...+
T Consensus 61 ~vi~v~~~~ 69 (99)
T cd01983 61 LVIIVTTPE 69 (99)
T ss_pred EEEEecCCc
Confidence 888884333
No 400
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.21 E-value=0.00047 Score=58.79 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
-.++.|.-|||||||+|.++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4578899999999999999844
No 401
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.00021 Score=55.43 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
..-++|.|++|+||||+++.|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999999999776
No 402
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.17 E-value=0.00045 Score=54.28 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
++.-|+|+|++|+|||||++.|+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45669999999999999999998764
No 403
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00032 Score=56.92 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERV 62 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~ 62 (236)
-+.++|++|||||||+|.+.|-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678999999999999999998753
No 404
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.16 E-value=0.0015 Score=40.66 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=30.0
Q ss_pred CCCcEEEEEEeCCCCC-CCh-HHHHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDD-LDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~-~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
.-.++|+|+++++... .+- .+..+++.++..|+. .|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence 4579999998876544 443 345788999999975 89999999998
No 405
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.12 E-value=0.00043 Score=50.01 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 406
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.10 E-value=0.00056 Score=63.53 Aligned_cols=39 Identities=31% Similarity=0.369 Sum_probs=28.7
Q ss_pred HHHHHHHHH-hcCCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 23 LIELLSKLK-QENVNTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
+.+....+. .....-..|+++|..++||||.++++.|.+
T Consensus 14 lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~ 53 (657)
T KOG0446|consen 14 LQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFV 53 (657)
T ss_pred HHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccc
Confidence 334444443 222345799999999999999999999975
No 407
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.09 E-value=0.00053 Score=43.63 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 026593 39 TILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~ 58 (236)
..++.|++|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998865
No 408
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.09 E-value=0.012 Score=43.03 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
....++++|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999988654
No 409
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.07 E-value=0.013 Score=41.58 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=50.3
Q ss_pred EEEcCCCCCHHHHHHHHhCC-------CccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 41 LVMGKGGVGKSSTVNSVIGE-------RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 41 llvG~~g~GKSSlin~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
++-++.|+||||+.-.|... ++......+.. +..++++|||+.... .....+
T Consensus 4 ~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------------~~D~IIiDtpp~~~~-----~~~~~l---- 62 (106)
T cd03111 4 FIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------------GDDYVVVDLGRSLDE-----VSLAAL---- 62 (106)
T ss_pred EECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------------CCCEEEEeCCCCcCH-----HHHHHH----
Confidence 45678999999976554422 22111111111 117899999986432 122222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk 161 (236)
..+|.++++...+...+.. -..+++.+.+.. ......+.+|+|+
T Consensus 63 --~~aD~vlvvv~~~~~s~~~-~~~~~~~l~~~~-~~~~~~~~lVvNr 106 (106)
T cd03111 63 --DQADRVFLVTQQDLPSIRN-AKRLLELLRVLD-YSLPAKIELVLNR 106 (106)
T ss_pred --HHcCeEEEEecCChHHHHH-HHHHHHHHHHcC-CCCcCceEEEecC
Confidence 2679999995444322221 134445554432 2112567788775
No 410
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.05 E-value=0.0041 Score=53.03 Aligned_cols=122 Identities=18% Similarity=0.228 Sum_probs=63.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC----ccc-cccCcCcccc------------------eEEEEe-------------ee
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER----VVT-VNSFQSEALR------------------PVMVSR-------------SK 82 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~----~~~-~~~~~~~~~~------------------~~~~~~-------------~~ 82 (236)
-.++.|.=|||||||+|.++... ++. ++++...... |..++. ..
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 35789999999999999998542 111 2222111111 111110 01
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
++....+|.|-|+.++...-...... ..+......|.++-| +|..++.......-+.+..... --=++|+||.
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~-~~l~~~~~ld~vvtv--VDa~~~~~~~~~~~~~~~~Qia----~AD~ivlNK~ 155 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTD-PELADGVRLDGVVTV--VDAAHFLEGLDAIAELAEDQLA----FADVIVLNKT 155 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccc-cccccceeeceEEEE--EeHHHhhhhHHHHHHHHHHHHH----hCcEEEEecc
Confidence 23578999999998773222111110 001112356788888 6665543322212222222221 2348999999
Q ss_pred CCCCC
Q 026593 163 QLCPP 167 (236)
Q Consensus 163 D~~~~ 167 (236)
|+.++
T Consensus 156 Dlv~~ 160 (323)
T COG0523 156 DLVDA 160 (323)
T ss_pred cCCCH
Confidence 99843
No 411
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.04 E-value=0.012 Score=41.16 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=37.1
Q ss_pred EEEEc-CCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 40 ILVMG-KGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 40 IllvG-~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
|++.| +.|+||||+...+...-... .......... ....++++|+|+..+. .....+ ..+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-------~~~vl~~d~d-~~~d~viiD~p~~~~~-----~~~~~l------~~a 62 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-------GKRVLLIDLD-PQYDYIIIDTPPSLGL-----LTRNAL------AAA 62 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-------CCcEEEEeCC-CCCCEEEEeCcCCCCH-----HHHHHH------HHC
Confidence 44555 78999999876655221100 0000001010 1157899999986432 222222 268
Q ss_pred cEEEEEEeCC
Q 026593 119 DVLLYADRLD 128 (236)
Q Consensus 119 ~~il~v~~~d 128 (236)
|.++++.+.+
T Consensus 63 d~viv~~~~~ 72 (104)
T cd02042 63 DLVLIPVQPS 72 (104)
T ss_pred CEEEEeccCC
Confidence 9999994433
No 412
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.99 E-value=0.00087 Score=49.97 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 026593 40 ILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~ 60 (236)
|+++|++|+||||+++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999999976
No 413
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.99 E-value=0.00084 Score=53.61 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+.-|+|+|++|+||||+++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4567889999999999999999754
No 414
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.99 E-value=0.00068 Score=50.09 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERV 62 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~ 62 (236)
=.++++|++|+|||||++.|+|...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 3789999999999999999999863
No 415
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.00082 Score=60.67 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=69.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcccc--cc---------------CcCcccceEEEEeeeCCeeEEEEeCCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTV--NS---------------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~ 100 (236)
-+|.+...--+||||+..+++-...... .. ..+.+.+.......|...++.+|||||..|+-.
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~ 119 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF 119 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence 4788888999999999999885432111 00 011222333345567788999999999999876
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 101 ~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+.+++.+ |+.++|+..-+ ....+....-++++++- .|.+..+||.|....
T Consensus 120 EVeRALrVl---------DGaVlvl~aV~-GVqsQt~tV~rQ~~ry~-----vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 120 EVERALRVL---------DGAVLVLDAVA-GVESQTETVWRQMKRYN-----VPRICFINKMDRMGA 171 (721)
T ss_pred Eehhhhhhc---------cCeEEEEEccc-ceehhhHHHHHHHHhcC-----CCeEEEEehhhhcCC
Confidence 665555544 33333311111 23333333445555443 788888999997533
No 416
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.98 E-value=0.001 Score=52.23 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
..-.++++|++|+||||+++++++.-
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34589999999999999999999763
No 417
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.94 E-value=0.0017 Score=52.76 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 26 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+..+.....++.-+.+.|++|+|||||++.|.+.
T Consensus 22 ~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 22 RLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred HHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 33333344456899999999999999999998865
No 418
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.93 E-value=0.00069 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERV 62 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~ 62 (236)
-++++|++|||||||+|.+.+-+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 679999999999999999998764
No 419
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.89 E-value=0.00079 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERV 62 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~ 62 (236)
.+.++|++|+|||||+|.+.|-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 789999999999999999998753
No 420
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.89 E-value=0.0048 Score=53.47 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=21.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.....+++++|+.++|||||..-|++
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHH
Confidence 34668999999999999998655553
No 421
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.89 E-value=0.012 Score=48.79 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=42.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-ccccccC-cCcccceEEEEe---eeCCeeEEEEeCCCCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSF-QSEALRPVMVSR---SKGGFTLNIIDTPGLVEA 98 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~-~~~~~~~-~~~~~~~~~~~~---~~~~~~~~liDTPG~~d~ 98 (236)
+=.-|.++|+..+|||.|+|.|++.. .+.+++. .+.|.....+.. ...+..+.++||.|+.+.
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 44577899999999999999999853 2333332 234444344332 224568999999999883
No 422
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.019 Score=43.73 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~ 58 (236)
+...+|.+.|+||+||||++..+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHH
Confidence 456899999999999999987776
No 423
>PRK07261 topology modulation protein; Provisional
Probab=96.88 E-value=0.00086 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
+|+++|.+|+|||||+..|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999988643
No 424
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.88 E-value=0.0012 Score=56.91 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
...+|+++|++|+|||||+++|++.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 5679999999999999999999976
No 425
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.00078 Score=57.51 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
-++++|++|||||||++.|.|-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999875
No 426
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.86 E-value=0.014 Score=53.09 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
++++.+++..-......--+++.|++|+||||++..|+..-
T Consensus 29 ~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 29 EEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 44555555543333233457789999999999999988653
No 427
>PRK08118 topology modulation protein; Reviewed
Probab=96.86 E-value=0.00093 Score=51.56 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
+|+|+|++|+|||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988854
No 428
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.85 E-value=0.0015 Score=50.70 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.|+++|++|+||||+++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999999854
No 429
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.84 E-value=0.038 Score=41.37 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.+.|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 367899999999999999999975
No 430
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.83 E-value=0.00095 Score=49.63 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 026593 40 ILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~ 60 (236)
|+++|++|+||||++..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998843
No 431
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.001 Score=51.93 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
+|+++|+|||||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 432
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.82 E-value=0.003 Score=46.74 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 24 IELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 24 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.++.+.+-+.-.+.-.|++.|+.|+|||||++.++..
T Consensus 9 ~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 9 DKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444444444445568999999999999999998855
No 433
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.81 E-value=0.0019 Score=55.34 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
...+|+++|.+|+|||||+|+|+..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhh
Confidence 5569999999999999999999864
No 434
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.80 E-value=0.0039 Score=52.73 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
....|+++|++|+||||++++|++.
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999854
No 435
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.76 E-value=0.0017 Score=51.50 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
+.-.|+++|++|+|||||++.|.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34579999999999999999998763
No 436
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.75 E-value=0.0014 Score=50.83 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=18.1
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 32 QENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 32 ~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.....+-.++|.|++|+|||+|++.+...
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33445678999999999999999987744
No 437
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.75 E-value=0.033 Score=48.75 Aligned_cols=38 Identities=34% Similarity=0.544 Sum_probs=26.8
Q ss_pred HHHHHHHHHhc--CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 23 LIELLSKLKQE--NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 23 ~~~~~~~~~~~--~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+.++...+... +..+..+++.|++|+|||++++.++..
T Consensus 39 ~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 39 IEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred HHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44444444322 334567999999999999999998853
No 438
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0012 Score=51.89 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
+.=.++++|++|||||||+|.+.|--
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 33477889999999999999999864
No 439
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.73 E-value=0.029 Score=45.36 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=27.1
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 164 (236)
.++|.++.|.+....++. .-+-+..|....+ ..++.+|+||+|.
T Consensus 154 ~~vD~vivVvDpS~~sl~--taeri~~L~~elg---~k~i~~V~NKv~e 197 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLR--TAERIKELAEELG---IKRIFVVLNKVDE 197 (255)
T ss_pred cCCCEEEEEeCCcHHHHH--HHHHHHHHHHHhC---CceEEEEEeeccc
Confidence 579999999443322221 2233344444444 3899999999985
No 440
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.037 Score=42.71 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999975
No 441
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.69 E-value=0.0015 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++|+|++|+||||+++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998763
No 442
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.67 E-value=0.02 Score=51.63 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+--|++.|++|+|||.+++++.+.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999764
No 443
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.67 E-value=0.0016 Score=52.03 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.++..|.++|++|||||||++.|.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998854
No 444
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.66 E-value=0.0017 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.560 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
..+++++++|++|+|||+|+-.|+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 36799999999999999999888744
No 445
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.65 E-value=5.2e-05 Score=58.50 Aligned_cols=116 Identities=12% Similarity=0.137 Sum_probs=68.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcC-cccceEEEEeeeCCe---eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-EALRPVMVSRSKGGF---TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
++++++|.-|+||+|++.+.+-.... ..+.. ...........|+.. ++.+||..|++.+..+.. +
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs--~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtr---------V 94 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFS--YHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTR---------V 94 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHH--HHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEE---------E
Confidence 78999999999999999887754321 11110 011111112233333 567999999986654432 1
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhh--CccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTF--GKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~--~~~~~~~~ivv~tk~D~~ 165 (236)
....+++..+|+++.+.. +.. -..|.+.+.... +.+.-.|++++.||||..
T Consensus 95 yykea~~~~iVfdvt~s~tfe~-~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 95 YYKEAHGAFIVFDVTRSLTFEP-VSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred EecCCcceEEEEEccccccccH-HHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 124788888998886543 332 233444333322 122227889999999985
No 446
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=96.64 E-value=0.0011 Score=58.57 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=48.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEE----EeeeCC--eeEEEE-----eCCCCCCCCCChHHH
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV----SRSKGG--FTLNII-----DTPGLVEAGYVNYQA 105 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~li-----DTPG~~d~~~~~~~~ 105 (236)
.=++.++|.+|+|||||++.+.+.....+..+.......... .....+ .+-+++ |+||.-.... ..
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~---~~ 233 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGA---FC 233 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHH---HH
Confidence 348899999999999999999865322111111100000000 001111 134556 7777532211 12
Q ss_pred HHHHHHHHhcCCCcEEEEEEeCC
Q 026593 106 LELIKGFLLNKTIDVLLYADRLD 128 (236)
Q Consensus 106 ~~~i~~~l~~~~~~~il~v~~~d 128 (236)
...+.+++.+.+-|+++++.++.
T Consensus 234 a~~iAEyFrd~G~~Vll~~DslT 256 (434)
T PRK08472 234 AMSVAEYFKNQGLDVLFIMDSVT 256 (434)
T ss_pred HHHHHHHHHHcCCCEEEecccch
Confidence 33455666667899999986665
No 447
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.64 E-value=0.0019 Score=42.04 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 026593 40 ILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~ 60 (236)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999988754
No 448
>PRK06696 uridine kinase; Validated
Probab=96.63 E-value=0.0044 Score=50.05 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=27.2
Q ss_pred HHHHHHHHHh-cCCCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 23 LIELLSKLKQ-ENVNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 23 ~~~~~~~~~~-~~~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+.++.+.+.. ....++-|++.|.+|+|||||.+.|..
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443 344689999999999999999988773
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.61 E-value=0.0015 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
.++++|++||||||+++.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998764
No 450
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.61 E-value=0.005 Score=49.56 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 26 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++....++..-..+++.|+||.|||||++.+...-
T Consensus 39 ~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 39 LIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp HHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 344444444345689999999999999999988543
No 451
>PRK08233 hypothetical protein; Provisional
Probab=96.59 E-value=0.002 Score=49.90 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+..-|++.|.+|+||||+++.|...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 4567899999999999999999854
No 452
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.59 E-value=0.0019 Score=45.95 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 026593 38 LTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~ 58 (236)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 468999999999999999976
No 453
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.58 E-value=0.0017 Score=51.76 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+..-|.++|++|+|||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 454
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.57 E-value=0.0019 Score=50.36 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.-.++++|++|+|||||++.++|..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3488999999999999999999975
No 455
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.57 E-value=0.002 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.+.++|++|+|||||++.|+|..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999874
No 456
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.57 E-value=0.003 Score=52.86 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.-+-+-|+|.+|+|||||++.+++.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999887754
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.56 E-value=0.0024 Score=46.30 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
-.++++|++|+|||+++..++..-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 478999999999999999988664
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.56 E-value=0.0017 Score=51.55 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
-|+++|++|+||||+++++++.-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999988653
No 459
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.54 E-value=0.002 Score=46.68 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 026593 40 ILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~ 60 (236)
|+|.|.+|+||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988755
No 460
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0022 Score=52.17 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999874
No 461
>PRK06217 hypothetical protein; Validated
Probab=96.53 E-value=0.0021 Score=50.18 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+|+|+|.+|+||||+...|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988844
No 462
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.53 E-value=0.0022 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+.-.++++|++|+|||||++.+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 335889999999999999999874
No 463
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.52 E-value=0.0023 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 378999999999999999999874
No 464
>PRK14530 adenylate kinase; Provisional
Probab=96.51 E-value=0.0026 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
..+|+++|++|+||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999998863
No 465
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.51 E-value=0.0023 Score=51.25 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999974
No 466
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.50 E-value=0.0024 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999974
No 467
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.49 E-value=0.0032 Score=53.73 Aligned_cols=25 Identities=40% Similarity=0.676 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
...+|++.|.+|+|||||+|+|++.
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999864
No 468
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.0025 Score=50.90 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.++|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 88999999999999999999874
No 469
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.49 E-value=0.0024 Score=51.03 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999874
No 470
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.48 E-value=0.0025 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999874
No 471
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0025 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999874
No 472
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.0059 Score=49.47 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCc
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERV 62 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~ 62 (236)
.=.+.++|++|||||||.+.+.|-.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 34889999999999999999999763
No 473
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.46 E-value=0.0026 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999974
No 474
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.0026 Score=51.13 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999974
No 475
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.45 E-value=0.0026 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|+|||||++.+.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999974
No 476
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.44 E-value=0.049 Score=45.11 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=15.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 026593 39 TILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~ 58 (236)
.|.+.|+.|+||||+.-.|.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA 21 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLS 21 (267)
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 57888999999999754433
No 477
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.44 E-value=0.04 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
--+++.|++|+|||.|+.++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~ 122 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNE 122 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998854
No 478
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0027 Score=50.73 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999874
No 479
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.44 E-value=0.0029 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||+..+-+-.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 378999999999999999887654
No 480
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.44 E-value=0.0027 Score=51.03 Aligned_cols=24 Identities=21% Similarity=0.588 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999874
No 481
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0028 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999974
No 482
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.42 E-value=0.0028 Score=51.76 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999874
No 483
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.41 E-value=0.0031 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.=.++++|++|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999875
No 484
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.41 E-value=0.0027 Score=51.25 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.+.++|++|+|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 478999999999999999999875
No 485
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.40 E-value=0.0029 Score=50.48 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999974
No 486
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.39 E-value=0.0022 Score=49.09 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
||+|+|.+|+|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999855
No 487
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.39 E-value=0.0028 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+++|.++|+.|+|||||++.+++.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999988854
No 488
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.39 E-value=0.051 Score=43.08 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
=+++++|+.|+|||||++.+.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 37899999999999999998843
No 489
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.0083 Score=51.94 Aligned_cols=141 Identities=11% Similarity=0.110 Sum_probs=76.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcc-----------------ccccC-------------cCcccceEEEEeeeC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVV-----------------TVNSF-------------QSEALRPVMVSRSKG 83 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~-----------------~~~~~-------------~~~~~~~~~~~~~~~ 83 (236)
.+..++++++|..-+||||.-..|+..... ..+.+ .+.+.......+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 356799999999999999987776643100 00000 001111112233445
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC----CChH-HHHHHHHHHHhhCccccCcEEEE
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR----VDDL-DRQIIKAVTGTFGKQIWRKSLLV 158 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~----~~~~-~~~~l~~l~~~~~~~~~~~~ivv 158 (236)
.+.+.+.|+||...+-. ..|..+ .++|+-++|.+..... |... +.+---++.+..|. .+.|++
T Consensus 156 ~~~ftiLDApGHk~fv~------nmI~Ga---sqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~lVv~ 223 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVP------NMIGGA---SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KHLIVL 223 (501)
T ss_pred ceeEEeeccCcccccch------hhcccc---chhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ceEEEE
Confidence 67899999999854421 011111 2566666663332111 2111 12222334444454 889999
Q ss_pred EeCCCCCCCCCCchHHHHhhchHHHHHHHH
Q 026593 159 LTHAQLCPPDGLNYDVYCSKRSDALLKTIR 188 (236)
Q Consensus 159 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~ 188 (236)
+||+|.- ...++-+.|-+. .+.+..+++
T Consensus 224 vNKMddP-tvnWs~eRy~E~-~~k~~~fLr 251 (501)
T KOG0459|consen 224 INKMDDP-TVNWSNERYEEC-KEKLQPFLR 251 (501)
T ss_pred EEeccCC-ccCcchhhHHHH-HHHHHHHHH
Confidence 9999862 445555555443 455666776
No 490
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.0031 Score=48.99 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.+.++|+.|+|||||++.|+|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999874
No 491
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.003 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999875
No 492
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.38 E-value=0.0031 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999874
No 493
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.38 E-value=0.0037 Score=53.32 Aligned_cols=25 Identities=44% Similarity=0.700 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
...+|+++|.+|+|||||+++|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4569999999999999999999964
No 494
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0028 Score=57.15 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERV 62 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~ 62 (236)
=+++++|++|+|||||++.|+|.-.
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC
Confidence 3889999999999999999998753
No 495
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.37 E-value=0.0049 Score=52.34 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
..-.++++|++|+|||||+++|++.-
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 45699999999999999999999764
No 496
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.36 E-value=0.0028 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
-+.++|++|+|||||++.|.+..
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 45788999999999999999875
No 497
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.36 E-value=0.0031 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.+.++|++|+|||||++.|.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 478999999999999999999974
No 498
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.35 E-value=0.0032 Score=50.49 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.++|..
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999999875
No 499
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.35 E-value=0.0032 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999874
No 500
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.35 E-value=0.0034 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|+.|+|||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999974
Done!