Query 026593
Match_columns 236
No_of_seqs 149 out of 1847
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 17:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3def_A T7I23.11 protein; chlor 100.0 1.3E-32 4.6E-37 226.7 18.0 231 1-232 1-231 (262)
2 1h65_A Chloroplast outer envel 100.0 8.1E-32 2.8E-36 222.9 20.6 230 1-231 1-232 (270)
3 3lxx_A GTPase IMAP family memb 99.9 1.6E-24 5.6E-29 175.8 16.2 190 35-229 27-234 (239)
4 3lxw_A GTPase IMAP family memb 99.9 5E-24 1.7E-28 174.0 13.6 187 35-226 19-225 (247)
5 2xtp_A GTPase IMAP family memb 99.8 8.4E-19 2.9E-23 143.7 19.3 153 34-191 19-176 (260)
6 2dyk_A GTP-binding protein; GT 99.7 5.2E-17 1.8E-21 122.5 14.9 120 38-165 2-121 (161)
7 2gj8_A MNME, tRNA modification 99.7 3.4E-17 1.2E-21 125.9 13.6 125 36-165 3-128 (172)
8 4dhe_A Probable GTP-binding pr 99.7 4.3E-17 1.5E-21 130.0 14.3 124 36-165 28-157 (223)
9 1wf3_A GTP-binding protein; GT 99.7 5.2E-17 1.8E-21 136.0 15.3 124 36-165 6-130 (301)
10 3t5d_A Septin-7; GTP-binding p 99.7 9.5E-17 3.2E-21 132.7 14.3 124 36-165 7-157 (274)
11 2qu8_A Putative nucleolar GTP- 99.7 1.4E-16 4.6E-21 128.0 14.8 135 27-167 19-157 (228)
12 3i8s_A Ferrous iron transport 99.7 1.3E-16 4.5E-21 131.8 13.3 123 35-166 1-126 (274)
13 3tw8_B RAS-related protein RAB 99.7 1.1E-16 3.9E-21 122.8 11.1 119 36-167 8-128 (181)
14 1c1y_A RAS-related protein RAP 99.7 1.4E-16 4.6E-21 120.8 11.3 118 36-166 2-122 (167)
15 1svi_A GTP-binding protein YSX 99.7 8.7E-16 3E-20 119.7 16.0 121 36-165 22-147 (195)
16 3tkl_A RAS-related protein RAB 99.7 2.3E-16 7.9E-21 123.0 12.6 123 36-170 15-139 (196)
17 1u8z_A RAS-related protein RAL 99.7 1E-16 3.4E-21 121.4 10.0 121 35-167 2-124 (168)
18 3iev_A GTP-binding protein ERA 99.7 2.3E-16 8E-21 132.5 12.9 122 36-165 9-135 (308)
19 1kao_A RAP2A; GTP-binding prot 99.7 1.3E-16 4.5E-21 120.7 10.3 120 35-166 1-122 (167)
20 2g6b_A RAS-related protein RAB 99.7 1.8E-16 6.3E-21 121.8 11.1 122 36-168 9-132 (180)
21 2erx_A GTP-binding protein DI- 99.7 1.3E-16 4.4E-21 121.4 10.0 121 36-167 2-124 (172)
22 3q72_A GTP-binding protein RAD 99.7 2.5E-16 8.7E-21 119.4 11.4 122 37-169 2-123 (166)
23 2y8e_A RAB-protein 6, GH09086P 99.7 2.4E-16 8.4E-21 120.7 11.2 122 35-168 12-135 (179)
24 4dkx_A RAS-related protein RAB 99.7 3E-16 1E-20 125.3 12.0 127 35-174 11-140 (216)
25 2fg5_A RAB-22B, RAS-related pr 99.7 1.7E-16 5.9E-21 123.8 10.2 120 36-166 22-142 (192)
26 2fn4_A P23, RAS-related protei 99.7 7.7E-16 2.6E-20 118.1 13.7 120 34-166 6-128 (181)
27 2nzj_A GTP-binding protein REM 99.7 2.2E-16 7.6E-21 120.6 10.5 125 36-171 3-130 (175)
28 1mky_A Probable GTP-binding pr 99.7 7.5E-16 2.6E-20 135.4 15.2 120 38-165 2-123 (439)
29 3kkq_A RAS-related protein M-R 99.7 9.6E-16 3.3E-20 118.2 14.0 127 30-169 11-140 (183)
30 1z0j_A RAB-22, RAS-related pro 99.7 1.7E-16 5.9E-21 120.6 9.4 119 36-166 5-125 (170)
31 2hjg_A GTP-binding protein ENG 99.7 5E-16 1.7E-20 136.4 13.6 128 36-169 174-303 (436)
32 2ged_A SR-beta, signal recogni 99.7 4E-16 1.4E-20 121.5 11.7 146 18-176 28-178 (193)
33 2wji_A Ferrous iron transport 99.7 8.9E-16 3E-20 117.0 13.3 120 36-165 2-121 (165)
34 3t5g_A GTP-binding protein RHE 99.7 6.3E-16 2.2E-20 119.1 12.6 124 36-171 5-130 (181)
35 4dsu_A GTPase KRAS, isoform 2B 99.7 6.2E-16 2.1E-20 119.6 12.5 119 35-165 2-122 (189)
36 3iby_A Ferrous iron transport 99.7 3.5E-16 1.2E-20 128.0 11.6 118 38-166 2-124 (256)
37 2lkc_A Translation initiation 99.7 2.2E-16 7.7E-21 121.1 9.8 114 36-165 7-120 (178)
38 1z2a_A RAS-related protein RAB 99.7 6.6E-16 2.3E-20 117.1 12.3 118 36-166 4-123 (168)
39 2a9k_A RAS-related protein RAL 99.7 2.6E-16 8.9E-21 121.4 10.1 122 34-167 15-138 (187)
40 1ek0_A Protein (GTP-binding pr 99.7 4.4E-16 1.5E-20 118.2 11.1 120 36-167 2-123 (170)
41 3cph_A RAS-related protein SEC 99.7 8.2E-16 2.8E-20 121.5 13.1 118 36-165 19-138 (213)
42 3a1s_A Iron(II) transport prot 99.7 1.2E-15 4E-20 125.1 14.4 121 36-166 4-124 (258)
43 2bcg_Y Protein YP2, GTP-bindin 99.7 8.5E-16 2.9E-20 121.0 13.1 122 36-169 7-130 (206)
44 3pqc_A Probable GTP-binding pr 99.7 4.7E-15 1.6E-19 115.2 17.0 121 36-165 22-146 (195)
45 2efe_B Small GTP-binding prote 99.7 9E-16 3.1E-20 118.0 12.7 123 35-169 10-134 (181)
46 2bov_A RAla, RAS-related prote 99.7 6.7E-16 2.3E-20 121.2 12.3 124 34-169 11-136 (206)
47 2hxs_A RAB-26, RAS-related pro 99.7 6E-16 2.1E-20 118.7 11.6 121 35-166 4-129 (178)
48 3oes_A GTPase rhebl1; small GT 99.7 2.5E-16 8.6E-21 123.8 9.6 122 36-169 23-146 (201)
49 3gee_A MNME, tRNA modification 99.7 3E-16 1E-20 138.9 10.9 124 36-166 232-357 (476)
50 3clv_A RAB5 protein, putative; 99.7 1.3E-15 4.6E-20 118.9 13.5 115 36-164 6-159 (208)
51 2ce2_X GTPase HRAS; signaling 99.7 9.1E-16 3.1E-20 115.7 12.0 119 36-166 2-122 (166)
52 1z08_A RAS-related protein RAB 99.7 3.5E-16 1.2E-20 119.0 9.6 120 36-167 5-126 (170)
53 1g16_A RAS-related protein SEC 99.7 8.7E-16 3E-20 116.7 11.6 118 36-165 2-121 (170)
54 2oil_A CATX-8, RAS-related pro 99.7 4.2E-16 1.4E-20 121.5 9.9 120 36-167 24-145 (193)
55 1r2q_A RAS-related protein RAB 99.7 3.7E-16 1.3E-20 118.6 9.3 118 36-166 5-125 (170)
56 1z0f_A RAB14, member RAS oncog 99.7 6.6E-16 2.3E-20 118.3 10.5 120 36-167 14-135 (179)
57 4djt_A GTP-binding nuclear pro 99.6 7E-16 2.4E-20 122.5 10.8 119 36-166 10-131 (218)
58 3llu_A RAS-related GTP-binding 99.6 3E-15 1E-19 117.2 14.3 126 33-165 16-142 (196)
59 2atv_A RERG, RAS-like estrogen 99.6 1.3E-15 4.5E-20 119.1 12.2 119 35-167 26-147 (196)
60 2b6h_A ADP-ribosylation factor 99.6 4.3E-15 1.5E-19 116.0 14.9 116 35-165 27-143 (192)
61 1upt_A ARL1, ADP-ribosylation 99.6 8.4E-16 2.9E-20 117.0 10.6 117 35-166 5-122 (171)
62 1z06_A RAS-related protein RAB 99.6 1E-15 3.5E-20 119.0 11.2 122 35-166 18-141 (189)
63 2a5j_A RAS-related protein RAB 99.6 1.5E-15 5E-20 118.3 11.9 119 36-166 20-140 (191)
64 2gf9_A RAS-related protein RAB 99.6 9.3E-16 3.2E-20 119.2 10.7 119 37-167 22-142 (189)
65 1zj6_A ADP-ribosylation factor 99.6 3.4E-15 1.2E-19 115.8 13.8 116 35-165 14-130 (187)
66 2j1l_A RHO-related GTP-binding 99.6 4.9E-16 1.7E-20 123.5 9.1 118 34-165 31-151 (214)
67 4dcu_A GTP-binding protein ENG 99.6 7.3E-16 2.5E-20 136.1 10.9 134 36-175 194-329 (456)
68 3k53_A Ferrous iron transport 99.6 1.4E-15 4.9E-20 125.3 12.0 121 36-165 2-122 (271)
69 3con_A GTPase NRAS; structural 99.6 2.2E-15 7.6E-20 116.9 12.4 122 33-166 17-140 (190)
70 2il1_A RAB12; G-protein, GDP, 99.6 6.6E-16 2.3E-20 120.6 9.3 118 36-166 25-145 (192)
71 2bme_A RAB4A, RAS-related prot 99.6 1.2E-15 4E-20 117.9 10.7 120 36-167 9-130 (186)
72 2fu5_C RAS-related protein RAB 99.6 4.2E-16 1.4E-20 120.3 8.0 121 36-169 7-130 (183)
73 2o52_A RAS-related protein RAB 99.6 8E-16 2.7E-20 120.9 9.7 120 36-167 24-145 (200)
74 3r7w_A Gtpase1, GTP-binding pr 99.6 1.5E-15 5.3E-20 127.4 12.0 125 36-165 2-128 (307)
75 2q3h_A RAS homolog gene family 99.6 1.4E-15 4.9E-20 119.2 10.9 118 34-165 17-137 (201)
76 3qq5_A Small GTP-binding prote 99.6 6.7E-16 2.3E-20 134.6 9.9 123 36-168 33-156 (423)
77 3q85_A GTP-binding protein REM 99.6 2.8E-15 9.6E-20 113.9 12.2 121 37-169 2-126 (169)
78 2gf0_A GTP-binding protein DI- 99.6 1.1E-15 3.8E-20 119.4 10.0 120 35-166 6-128 (199)
79 3reg_A RHO-like small GTPase; 99.6 1.3E-15 4.3E-20 118.9 10.1 118 35-166 21-141 (194)
80 2h57_A ADP-ribosylation factor 99.6 1.8E-15 6.2E-20 117.6 10.9 119 35-165 19-139 (190)
81 1ksh_A ARF-like protein 2; sma 99.6 1.8E-15 6.3E-20 117.0 10.9 117 35-166 16-133 (186)
82 3c5c_A RAS-like protein 12; GD 99.6 2.8E-15 9.5E-20 116.6 11.8 119 35-166 19-141 (187)
83 4bas_A ADP-ribosylation factor 99.6 2.1E-15 7.2E-20 117.7 11.1 121 34-166 14-141 (199)
84 2fv8_A H6, RHO-related GTP-bin 99.6 6E-16 2E-20 122.2 8.1 116 36-165 24-142 (207)
85 1fzq_A ADP-ribosylation factor 99.6 3E-15 1E-19 115.8 11.8 123 28-165 7-130 (181)
86 1xzp_A Probable tRNA modificat 99.6 9.1E-16 3.1E-20 135.9 9.9 116 36-165 242-363 (482)
87 2atx_A Small GTP binding prote 99.6 1.9E-15 6.3E-20 117.9 10.6 116 36-165 17-135 (194)
88 3cpj_B GTP-binding protein YPT 99.6 1.9E-15 6.5E-20 120.7 10.8 119 36-166 12-132 (223)
89 2x77_A ADP-ribosylation factor 99.6 1.7E-15 5.7E-20 117.7 10.0 116 35-165 20-136 (189)
90 1zd9_A ADP-ribosylation factor 99.6 3.1E-15 1.1E-19 116.2 11.6 119 33-165 18-137 (188)
91 2h17_A ADP-ribosylation factor 99.6 1.8E-15 6E-20 116.9 10.1 118 33-165 17-135 (181)
92 3geh_A MNME, tRNA modification 99.6 2.2E-16 7.4E-21 139.3 5.5 121 36-166 223-344 (462)
93 4dcu_A GTP-binding protein ENG 99.6 1E-15 3.4E-20 135.2 9.7 123 35-165 21-144 (456)
94 1mh1_A RAC1; GTP-binding, GTPa 99.6 7.9E-16 2.7E-20 118.7 8.0 117 35-165 3-122 (186)
95 2p5s_A RAS and EF-hand domain 99.6 7.9E-16 2.7E-20 120.7 8.0 118 36-165 27-146 (199)
96 1m2o_B GTP-binding protein SAR 99.6 4E-15 1.4E-19 116.0 11.9 116 35-165 21-137 (190)
97 2hup_A RAS-related protein RAB 99.6 1.4E-15 4.7E-20 119.7 9.3 118 36-166 28-148 (201)
98 2wjg_A FEOB, ferrous iron tran 99.6 5.8E-15 2E-19 114.3 12.7 121 35-165 5-125 (188)
99 1mky_A Probable GTP-binding pr 99.6 2.1E-15 7.2E-20 132.5 11.3 120 36-167 179-307 (439)
100 2gco_A H9, RHO-related GTP-bin 99.6 9.9E-16 3.4E-20 120.4 8.1 116 36-165 24-142 (201)
101 2hjg_A GTP-binding protein ENG 99.6 1E-15 3.6E-20 134.4 9.0 122 37-166 3-125 (436)
102 1zbd_A Rabphilin-3A; G protein 99.6 2.6E-15 8.9E-20 117.9 10.3 120 37-168 8-129 (203)
103 1moz_A ARL1, ADP-ribosylation 99.6 3.7E-15 1.3E-19 114.8 10.8 116 35-165 16-132 (183)
104 3cbq_A GTP-binding protein REM 99.6 5.5E-15 1.9E-19 115.8 11.9 126 36-172 22-150 (195)
105 1r8s_A ADP-ribosylation factor 99.6 2.7E-15 9.3E-20 113.4 9.7 113 38-165 1-114 (164)
106 1f6b_A SAR1; gtpases, N-termin 99.6 5.2E-15 1.8E-19 116.2 11.6 116 35-165 23-139 (198)
107 1wms_A RAB-9, RAB9, RAS-relate 99.6 3.1E-15 1.1E-19 114.5 9.9 120 36-165 6-129 (177)
108 1m7b_A RND3/RHOE small GTP-bin 99.6 1.1E-15 3.7E-20 118.4 7.3 116 36-165 6-124 (184)
109 3gj0_A GTP-binding nuclear pro 99.6 1.3E-15 4.5E-20 121.4 8.0 121 34-166 12-133 (221)
110 2fh5_B SR-beta, signal recogni 99.6 1.7E-14 5.8E-19 114.2 14.4 116 36-166 6-129 (214)
111 3q3j_B RHO-related GTP-binding 99.6 1.4E-15 5E-20 120.9 8.2 119 33-165 23-144 (214)
112 4gzl_A RAS-related C3 botulinu 99.6 1.1E-15 3.6E-20 120.6 7.2 117 35-165 28-147 (204)
113 1ky3_A GTP-binding protein YPT 99.6 2.1E-15 7.3E-20 115.8 8.8 120 36-165 7-131 (182)
114 3b1v_A Ferrous iron uptake tra 99.6 7.6E-15 2.6E-19 121.1 12.5 118 37-165 3-120 (272)
115 1vg8_A RAS-related protein RAB 99.6 5.4E-15 1.8E-19 116.2 11.2 119 36-165 7-130 (207)
116 2iwr_A Centaurin gamma 1; ANK 99.6 8.6E-15 3E-19 112.3 12.0 113 35-165 5-121 (178)
117 3bc1_A RAS-related protein RAB 99.6 8.3E-15 2.8E-19 113.6 12.0 120 36-166 10-141 (195)
118 1x3s_A RAS-related protein RAB 99.6 2.4E-15 8.1E-20 117.0 8.6 119 36-165 14-134 (195)
119 2j0v_A RAC-like GTP-binding pr 99.6 2.4E-15 8.3E-20 118.9 8.2 116 36-165 8-126 (212)
120 1gwn_A RHO-related GTP-binding 99.6 1.7E-15 5.7E-20 119.8 7.2 117 35-165 26-145 (205)
121 3dz8_A RAS-related protein RAB 99.6 3.8E-15 1.3E-19 116.0 9.1 121 36-167 22-143 (191)
122 3o47_A ADP-ribosylation factor 99.6 1.2E-14 4.3E-19 123.0 13.0 115 36-165 164-279 (329)
123 2ew1_A RAS-related protein RAB 99.6 2.6E-15 8.9E-20 118.4 8.0 119 36-166 25-145 (201)
124 2e87_A Hypothetical protein PH 99.6 4.3E-14 1.5E-18 121.0 16.2 125 35-165 165-293 (357)
125 2yc2_C IFT27, small RAB-relate 99.6 3.2E-15 1.1E-19 117.4 8.4 122 36-166 19-146 (208)
126 1jwy_B Dynamin A GTPase domain 99.6 1.9E-14 6.6E-19 120.7 13.5 126 35-167 22-213 (315)
127 3l0i_B RAS-related protein RAB 99.6 5.2E-16 1.8E-20 121.7 3.6 120 36-167 32-153 (199)
128 3bwd_D RAC-like GTP-binding pr 99.6 9.7E-16 3.3E-20 117.9 5.0 117 35-165 6-125 (182)
129 1ega_A Protein (GTP-binding pr 99.6 3.7E-15 1.3E-19 124.8 7.7 120 36-165 7-129 (301)
130 1nrj_B SR-beta, signal recogni 99.6 4.3E-14 1.5E-18 112.1 12.9 122 35-167 10-135 (218)
131 3ihw_A Centg3; RAS, centaurin, 99.6 2.4E-14 8.1E-19 111.1 10.6 114 33-165 16-132 (184)
132 2j69_A Bacterial dynamin-like 99.6 1.5E-14 5E-19 133.7 10.8 120 36-166 68-244 (695)
133 2cjw_A GTP-binding protein GEM 99.5 4.7E-14 1.6E-18 110.2 11.7 120 36-166 5-128 (192)
134 2wkq_A NPH1-1, RAS-related C3 99.5 2.1E-14 7E-19 121.0 10.1 126 26-165 144-272 (332)
135 2g3y_A GTP-binding protein GEM 99.5 9E-14 3.1E-18 110.5 13.1 121 36-166 36-159 (211)
136 2f7s_A C25KG, RAS-related prot 99.5 1.6E-14 5.6E-19 114.5 8.7 118 36-166 24-155 (217)
137 2aka_B Dynamin-1; fusion prote 99.5 3.2E-13 1.1E-17 112.3 16.4 124 36-167 25-207 (299)
138 2cxx_A Probable GTP-binding pr 99.5 1.3E-13 4.3E-18 106.7 12.9 120 38-165 2-135 (190)
139 2qpt_A EH domain-containing pr 99.5 7.1E-14 2.4E-18 125.8 13.0 122 37-165 65-231 (550)
140 3t1o_A Gliding protein MGLA; G 99.5 2.9E-14 9.8E-19 110.9 8.3 120 36-165 13-148 (198)
141 3th5_A RAS-related C3 botulinu 99.3 1.1E-15 3.6E-20 120.4 0.0 117 35-165 28-147 (204)
142 4a9a_A Ribosome-interacting GT 99.5 3.3E-14 1.1E-18 121.9 8.7 144 11-164 30-194 (376)
143 2zej_A Dardarin, leucine-rich 99.5 1.8E-14 6.2E-19 111.6 6.5 116 37-165 2-125 (184)
144 2qag_A Septin-2, protein NEDD5 99.5 1.4E-13 4.9E-18 117.9 12.3 145 7-165 15-187 (361)
145 2qtf_A Protein HFLX, GTP-bindi 99.5 4.2E-13 1.4E-17 115.0 14.6 124 37-165 178-305 (364)
146 2x2e_A Dynamin-1; nitration, h 99.5 3.1E-13 1.1E-17 115.4 13.9 126 36-167 30-212 (353)
147 3t34_A Dynamin-related protein 99.5 2.5E-13 8.7E-18 116.3 13.2 127 36-169 33-220 (360)
148 3dpu_A RAB family protein; roc 99.5 6.6E-13 2.3E-17 119.4 15.9 122 34-171 38-169 (535)
149 3p26_A Elongation factor 1 alp 99.5 3.6E-13 1.2E-17 119.7 13.4 120 34-166 30-185 (483)
150 1lnz_A SPO0B-associated GTP-bi 99.5 8.1E-14 2.8E-18 118.4 8.5 121 38-165 159-287 (342)
151 3lvq_E ARF-GAP with SH3 domain 99.5 1.3E-13 4.6E-18 122.8 10.2 115 36-165 321-436 (497)
152 3j2k_7 ERF3, eukaryotic polype 99.5 1.8E-12 6.1E-17 113.8 16.0 119 34-165 14-168 (439)
153 2f9l_A RAB11B, member RAS onco 99.4 9.1E-13 3.1E-17 103.2 12.3 118 37-166 5-124 (199)
154 3r7w_B Gtpase2, GTP-binding pr 99.4 6.1E-13 2.1E-17 111.7 11.2 119 39-165 1-119 (331)
155 1oix_A RAS-related protein RAB 99.4 3.1E-12 1.1E-16 99.6 12.6 118 37-166 29-148 (191)
156 1zun_B Sulfate adenylate trans 99.4 3E-12 1E-16 112.3 13.5 117 35-165 22-170 (434)
157 3izq_1 HBS1P, elongation facto 99.4 1.1E-12 3.8E-17 119.4 11.0 120 34-166 164-319 (611)
158 2c78_A Elongation factor TU-A; 99.4 3.3E-12 1.1E-16 111.0 13.5 118 33-165 7-141 (405)
159 3zvr_A Dynamin-1; hydrolase, D 99.4 6E-12 2E-16 116.3 15.9 124 36-167 50-232 (772)
160 3tr5_A RF-3, peptide chain rel 99.4 5.4E-13 1.8E-17 119.5 8.3 115 36-165 12-147 (528)
161 1wxq_A GTP-binding protein; st 99.4 9.3E-13 3.2E-17 114.1 9.5 88 38-129 1-113 (397)
162 1wb1_A Translation elongation 99.4 3.6E-12 1.2E-16 113.1 13.2 117 34-165 16-138 (482)
163 1pui_A ENGB, probable GTP-bind 99.4 7.9E-12 2.7E-16 98.3 13.2 121 36-165 25-150 (210)
164 1d2e_A Elongation factor TU (E 99.4 8.9E-12 3E-16 108.1 14.1 115 36-165 2-132 (397)
165 3sjy_A Translation initiation 99.4 5.8E-12 2E-16 109.4 12.2 119 34-165 5-142 (403)
166 3izy_P Translation initiation 99.4 9.5E-14 3.2E-18 124.2 0.9 116 36-167 3-119 (537)
167 1zo1_I IF2, translation initia 99.3 4.8E-13 1.6E-17 118.7 4.5 115 36-166 3-117 (501)
168 2h5e_A Peptide chain release f 99.3 3.3E-12 1.1E-16 114.4 9.8 115 36-165 12-147 (529)
169 1jny_A EF-1-alpha, elongation 99.3 6.8E-12 2.3E-16 110.0 10.7 119 35-166 4-158 (435)
170 1f60_A Elongation factor EEF1A 99.3 2.3E-12 7.8E-17 113.7 7.4 119 34-165 4-158 (458)
171 2xex_A Elongation factor G; GT 99.3 5.5E-12 1.9E-16 116.5 10.1 116 36-166 9-141 (693)
172 2qag_C Septin-7; cell cycle, c 99.3 7E-12 2.4E-16 109.0 9.9 122 36-165 30-180 (418)
173 3mca_A HBS1, elongation factor 99.3 3.4E-13 1.2E-17 122.4 0.1 118 35-165 175-328 (592)
174 1kk1_A EIF2gamma; initiation o 99.3 7.5E-11 2.6E-15 102.6 14.8 118 35-165 8-150 (410)
175 2elf_A Protein translation elo 99.3 1.7E-11 5.7E-16 105.3 10.5 101 39-164 23-125 (370)
176 1dar_A EF-G, elongation factor 99.3 3.1E-11 1E-15 111.5 12.6 116 36-166 11-143 (691)
177 1g7s_A Translation initiation 99.3 3.3E-11 1.1E-15 109.2 12.4 115 36-166 4-136 (594)
178 1s0u_A EIF-2-gamma, translatio 99.3 1.2E-10 4.1E-15 101.3 15.2 120 35-167 6-150 (408)
179 1r5b_A Eukaryotic peptide chai 99.3 8.4E-12 2.9E-16 110.4 7.9 118 35-165 41-194 (467)
180 1puj_A YLQF, conserved hypothe 99.3 2.3E-11 7.9E-16 100.7 9.8 94 8-104 89-184 (282)
181 2rdo_7 EF-G, elongation factor 99.2 6.8E-11 2.3E-15 109.3 13.1 116 36-166 9-148 (704)
182 1n0u_A EF-2, elongation factor 99.2 2.9E-11 1E-15 113.8 9.9 115 36-165 18-163 (842)
183 3avx_A Elongation factor TS, e 99.2 1.9E-10 6.4E-15 109.9 15.4 118 33-165 292-425 (1289)
184 2ywe_A GTP-binding protein LEP 99.2 4E-11 1.4E-15 108.6 8.8 114 37-165 6-138 (600)
185 3cb4_D GTP-binding protein LEP 99.2 2.9E-11 1E-15 109.6 7.9 115 37-166 4-137 (599)
186 2qnr_A Septin-2, protein NEDD5 99.2 8.7E-11 3E-15 98.1 10.3 124 36-165 17-168 (301)
187 3sop_A Neuronal-specific septi 99.2 1.9E-10 6.5E-15 94.6 11.9 123 37-165 2-153 (270)
188 3ec1_A YQEH GTPase; atnos1, at 99.2 2.5E-12 8.6E-17 110.4 0.1 121 37-166 162-288 (369)
189 3h2y_A GTPase family protein; 99.2 3.2E-12 1.1E-16 109.7 0.6 120 37-165 160-286 (368)
190 1udx_A The GTP-binding protein 99.2 2.4E-10 8.1E-15 99.4 11.5 120 38-165 158-282 (416)
191 3vqt_A RF-3, peptide chain rel 99.1 2.9E-10 9.9E-15 102.3 12.4 114 37-165 31-165 (548)
192 1jal_A YCHF protein; nucleotid 99.1 1.2E-10 4E-15 99.4 6.7 86 37-129 2-108 (363)
193 2dy1_A Elongation factor G; tr 99.1 1.1E-09 3.8E-14 100.7 12.5 115 36-165 8-139 (665)
194 3p32_A Probable GTPase RV1496/ 99.1 1.6E-10 5.3E-15 98.8 6.4 121 23-165 65-230 (355)
195 3c5h_A Glucocorticoid receptor 99.0 5.2E-11 1.8E-15 97.1 2.5 47 117-165 162-211 (255)
196 2qag_B Septin-6, protein NEDD5 99.0 1.3E-09 4.4E-14 94.7 11.0 122 37-165 42-189 (427)
197 2ohf_A Protein OLA1, GTP-bindi 99.0 4.2E-10 1.4E-14 96.9 6.8 90 32-128 17-127 (396)
198 2www_A Methylmalonic aciduria 99.0 3.5E-09 1.2E-13 90.1 11.1 24 36-59 73-96 (349)
199 2p67_A LAO/AO transport system 99.0 8.4E-10 2.9E-14 93.7 7.1 119 25-165 44-207 (341)
200 2dby_A GTP-binding protein; GD 98.9 2.1E-09 7.3E-14 92.0 8.8 85 38-129 2-111 (368)
201 2j37_W Signal recognition part 98.9 3E-09 1E-13 94.4 9.6 118 36-165 100-253 (504)
202 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 1.8E-09 6.1E-14 93.1 7.6 88 35-128 18-126 (392)
203 4fn5_A EF-G 1, elongation fact 98.9 1.7E-08 5.7E-13 93.6 13.6 113 38-165 14-150 (709)
204 1f5n_A Interferon-induced guan 98.9 3.8E-09 1.3E-13 95.3 8.9 68 32-99 33-105 (592)
205 3cnl_A YLQF, putative uncharac 98.9 1.2E-09 4.1E-14 89.4 4.4 60 38-100 100-159 (262)
206 3j25_A Tetracycline resistance 98.9 1.2E-09 4.1E-14 100.0 4.8 113 38-165 3-132 (638)
207 2wsm_A Hydrogenase expression/ 98.8 1E-08 3.6E-13 81.0 8.2 46 13-60 8-53 (221)
208 2qm8_A GTPase/ATPase; G protei 98.8 8.5E-09 2.9E-13 87.3 7.2 34 25-58 43-76 (337)
209 1yrb_A ATP(GTP)binding protein 98.7 1.2E-08 4E-13 82.9 5.9 33 34-66 11-48 (262)
210 1tq4_A IIGP1, interferon-induc 98.7 8.3E-08 2.8E-12 83.2 10.6 117 36-165 68-188 (413)
211 3dm5_A SRP54, signal recogniti 98.7 8.3E-08 2.8E-12 83.7 10.2 119 36-165 99-252 (443)
212 3szr_A Interferon-induced GTP- 98.6 4.9E-07 1.7E-11 82.3 13.8 40 22-61 26-69 (608)
213 2v3c_C SRP54, signal recogniti 98.5 1.5E-07 5.3E-12 82.1 6.4 117 37-165 99-251 (432)
214 1zcb_A G alpha I/13; GTP-bindi 98.5 6.8E-08 2.3E-12 82.5 4.0 76 81-165 197-281 (362)
215 1cip_A Protein (guanine nucleo 98.4 5.5E-07 1.9E-11 76.6 8.2 77 80-165 188-273 (353)
216 3kl4_A SRP54, signal recogniti 98.4 8E-07 2.7E-11 77.4 8.6 121 36-165 96-251 (433)
217 4fid_A G protein alpha subunit 98.4 2.4E-06 8.2E-11 72.1 11.0 78 79-165 155-241 (340)
218 3ohm_A Guanine nucleotide-bind 98.4 1E-06 3.5E-11 74.1 8.5 77 79-165 161-247 (327)
219 2xxa_A Signal recognition part 98.2 2.1E-06 7.2E-11 75.0 7.2 119 36-165 99-253 (433)
220 1j8m_F SRP54, signal recogniti 98.2 1.1E-05 3.8E-10 66.9 10.2 120 37-165 98-252 (297)
221 3q5d_A Atlastin-1; G protein, 98.1 4.6E-06 1.6E-10 72.9 7.5 104 36-145 66-195 (447)
222 3e70_C DPA, signal recognition 98.1 1.3E-05 4.3E-10 67.5 8.5 119 36-165 128-281 (328)
223 1rj9_A FTSY, signal recognitio 98.0 7.5E-05 2.6E-09 62.1 11.4 121 37-165 102-260 (304)
224 2yhs_A FTSY, cell division pro 97.9 5.3E-05 1.8E-09 66.8 10.1 24 37-60 293-316 (503)
225 1t9h_A YLOQ, probable GTPase E 97.8 6.6E-06 2.3E-10 68.5 2.8 58 38-99 174-238 (307)
226 2ffh_A Protein (FFH); SRP54, s 97.8 2.6E-05 8.8E-10 67.8 5.6 72 83-165 179-250 (425)
227 2px0_A Flagellar biosynthesis 97.7 6.2E-05 2.1E-09 62.3 7.3 119 36-165 104-252 (296)
228 2yv5_A YJEQ protein; hydrolase 97.7 4.9E-05 1.7E-09 63.1 5.5 57 38-98 166-229 (302)
229 1vma_A Cell division protein F 97.6 3.5E-05 1.2E-09 64.2 4.3 23 37-59 104-126 (306)
230 1zu4_A FTSY; GTPase, signal re 97.6 0.00015 5E-09 60.8 8.0 23 37-59 105-127 (320)
231 2rcn_A Probable GTPase ENGC; Y 97.6 4.4E-05 1.5E-09 64.8 4.2 24 39-62 217-240 (358)
232 1u0l_A Probable GTPase ENGC; p 97.6 9.5E-05 3.3E-09 61.3 5.8 59 38-99 170-235 (301)
233 3b9q_A Chloroplast SRP recepto 97.5 0.0009 3.1E-08 55.5 10.6 24 37-60 100-123 (302)
234 1ls1_A Signal recognition part 97.5 0.00013 4.5E-09 60.4 5.2 72 83-165 179-250 (295)
235 4ido_A Atlastin-1; GTPase, GTP 97.5 0.00088 3E-08 58.4 10.6 103 38-145 68-195 (457)
236 4dzz_A Plasmid partitioning pr 97.4 0.00035 1.2E-08 53.9 7.2 68 84-164 75-142 (206)
237 2og2_A Putative signal recogni 97.4 0.0015 5.1E-08 55.5 11.4 24 37-60 157-180 (359)
238 1azs_C GS-alpha; complex (lyas 97.4 0.00014 4.9E-09 62.6 4.5 78 79-165 211-297 (402)
239 3c8u_A Fructokinase; YP_612366 97.3 0.00014 4.8E-09 56.8 3.5 36 25-60 10-45 (208)
240 2hf9_A Probable hydrogenase ni 97.3 0.00034 1.2E-08 54.9 5.5 25 36-60 37-61 (226)
241 2xtz_A Guanine nucleotide-bind 97.1 0.00051 1.8E-08 58.2 5.2 72 84-165 182-263 (354)
242 3ney_A 55 kDa erythrocyte memb 97.1 0.0001 3.4E-09 57.4 0.7 26 36-61 18-43 (197)
243 4b4t_K 26S protease regulatory 97.1 0.0045 1.5E-07 53.7 11.1 25 36-60 205-229 (428)
244 1kgd_A CASK, peripheral plasma 97.1 0.0002 7E-09 54.5 2.4 23 38-60 6-28 (180)
245 1ye8_A Protein THEP1, hypothet 97.1 0.00025 8.7E-09 54.1 2.6 23 39-61 2-24 (178)
246 1lvg_A Guanylate kinase, GMP k 97.1 0.00023 8E-09 55.2 2.4 23 38-60 5-27 (198)
247 4b4t_I 26S protease regulatory 97.0 0.0066 2.3E-07 52.6 11.3 25 36-60 215-239 (437)
248 2kjq_A DNAA-related protein; s 97.0 0.0036 1.2E-07 46.1 8.2 26 36-61 35-60 (149)
249 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.019 6.6E-07 45.6 13.1 24 36-59 38-61 (262)
250 1zp6_A Hypothetical protein AT 96.9 0.00068 2.3E-08 51.7 3.8 24 37-60 9-32 (191)
251 1fnn_A CDC6P, cell division co 96.9 0.017 5.7E-07 48.8 12.9 22 39-60 46-67 (389)
252 1znw_A Guanylate kinase, GMP k 96.9 0.00038 1.3E-08 54.2 2.4 24 38-61 21-44 (207)
253 3tlx_A Adenylate kinase 2; str 96.9 0.0011 3.9E-08 52.9 5.1 36 23-58 15-50 (243)
254 3a00_A Guanylate kinase, GMP k 96.9 0.0004 1.4E-08 53.1 2.3 23 39-61 3-25 (186)
255 3tr0_A Guanylate kinase, GMP k 96.8 0.00044 1.5E-08 53.4 2.4 24 37-60 7-30 (205)
256 1z6g_A Guanylate kinase; struc 96.8 0.00044 1.5E-08 54.4 2.4 24 38-61 24-47 (218)
257 1s96_A Guanylate kinase, GMP k 96.8 0.00045 1.6E-08 54.5 2.4 24 38-61 17-40 (219)
258 3h4m_A Proteasome-activating n 96.8 0.013 4.5E-07 47.4 11.2 25 36-60 50-74 (285)
259 3tif_A Uncharacterized ABC tra 96.8 0.00061 2.1E-08 54.4 3.1 23 39-61 33-55 (235)
260 3n70_A Transport activator; si 96.8 0.0017 5.9E-08 47.5 5.0 38 23-60 10-47 (145)
261 2pcj_A ABC transporter, lipopr 96.8 0.00072 2.5E-08 53.5 3.0 23 39-61 32-54 (224)
262 4gp7_A Metallophosphoesterase; 96.7 0.00083 2.8E-08 50.7 3.0 23 38-60 10-32 (171)
263 2bbw_A Adenylate kinase 4, AK4 96.7 0.001 3.5E-08 53.1 3.7 26 36-61 26-54 (246)
264 2cbz_A Multidrug resistance-as 96.7 0.00095 3.3E-08 53.3 3.3 23 39-61 33-55 (237)
265 3asz_A Uridine kinase; cytidin 96.7 0.00081 2.8E-08 52.2 2.8 25 36-60 5-29 (211)
266 1odf_A YGR205W, hypothetical 3 96.7 0.0017 5.9E-08 53.4 4.8 27 34-60 28-54 (290)
267 1ex7_A Guanylate kinase; subst 96.7 0.00096 3.3E-08 51.3 3.0 21 40-60 4-24 (186)
268 3gfo_A Cobalt import ATP-bindi 96.7 0.00094 3.2E-08 54.6 3.1 23 39-61 36-58 (275)
269 2onk_A Molybdate/tungstate ABC 96.7 0.00098 3.4E-08 53.4 3.1 23 39-61 26-48 (240)
270 1b0u_A Histidine permease; ABC 96.6 0.00098 3.3E-08 54.1 3.1 23 39-61 34-56 (262)
271 1mv5_A LMRA, multidrug resista 96.6 0.0011 3.7E-08 53.2 3.3 24 38-61 29-52 (243)
272 2j41_A Guanylate kinase; GMP, 96.6 0.0011 3.6E-08 51.2 3.2 26 36-61 5-30 (207)
273 1sgw_A Putative ABC transporte 96.6 0.001 3.5E-08 52.3 3.1 23 39-61 37-59 (214)
274 4g1u_C Hemin import ATP-bindin 96.6 0.00098 3.4E-08 54.2 3.1 23 39-61 39-61 (266)
275 2ff7_A Alpha-hemolysin translo 96.6 0.0011 3.7E-08 53.3 3.3 23 39-61 37-59 (247)
276 2v9p_A Replication protein E1; 96.6 0.0022 7.4E-08 53.2 5.1 35 26-60 115-149 (305)
277 2eyu_A Twitching motility prot 96.6 0.00078 2.7E-08 54.6 2.4 25 36-60 24-48 (261)
278 3tau_A Guanylate kinase, GMP k 96.6 0.0011 3.7E-08 51.7 3.2 26 36-61 7-32 (208)
279 4b4t_L 26S protease subunit RP 96.6 0.017 6E-07 50.1 11.0 25 36-60 214-238 (437)
280 1rz3_A Hypothetical protein rb 96.6 0.0024 8.2E-08 49.4 5.1 38 22-59 6-44 (201)
281 1htw_A HI0065; nucleotide-bind 96.6 0.00085 2.9E-08 50.2 2.4 26 36-61 32-57 (158)
282 1g6h_A High-affinity branched- 96.6 0.001 3.6E-08 53.7 3.1 23 39-61 35-57 (257)
283 2p5t_B PEZT; postsegregational 96.6 0.0023 8E-08 51.4 5.1 25 35-59 30-54 (253)
284 2pze_A Cystic fibrosis transme 96.6 0.0012 4.2E-08 52.4 3.3 23 39-61 36-58 (229)
285 1qhx_A CPT, protein (chloramph 96.6 0.0015 5.1E-08 49.1 3.7 23 37-59 3-25 (178)
286 3uie_A Adenylyl-sulfate kinase 96.6 0.0016 5.4E-08 50.3 3.8 25 36-60 24-48 (200)
287 2olj_A Amino acid ABC transpor 96.6 0.0012 4.1E-08 53.6 3.1 23 39-61 52-74 (263)
288 1kag_A SKI, shikimate kinase I 96.6 0.00095 3.2E-08 50.0 2.4 23 38-60 5-27 (173)
289 2ghi_A Transport protein; mult 96.6 0.0013 4.4E-08 53.3 3.3 23 39-61 48-70 (260)
290 1ji0_A ABC transporter; ATP bi 96.6 0.0012 4.1E-08 52.8 3.1 23 39-61 34-56 (240)
291 2qor_A Guanylate kinase; phosp 96.5 0.0013 4.3E-08 51.0 3.1 25 36-60 11-35 (204)
292 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0012 4.2E-08 53.1 3.1 22 39-60 31-52 (250)
293 3tqc_A Pantothenate kinase; bi 96.5 0.0027 9.4E-08 53.0 5.2 37 23-59 76-114 (321)
294 1vpl_A ABC transporter, ATP-bi 96.5 0.0013 4.4E-08 53.2 3.1 23 39-61 43-65 (256)
295 2qi9_C Vitamin B12 import ATP- 96.5 0.0014 4.8E-08 52.8 3.3 23 39-61 28-50 (249)
296 2ixe_A Antigen peptide transpo 96.5 0.0014 4.7E-08 53.5 3.3 23 39-61 47-69 (271)
297 1gvn_B Zeta; postsegregational 96.5 0.0033 1.1E-07 51.6 5.5 40 20-59 13-55 (287)
298 2bdt_A BH3686; alpha-beta prot 96.5 0.001 3.5E-08 50.7 2.4 21 39-59 4-24 (189)
299 2zu0_C Probable ATP-dependent 96.5 0.0015 5E-08 53.2 3.3 22 39-60 48-69 (267)
300 2ihy_A ABC transporter, ATP-bi 96.5 0.0015 5.1E-08 53.5 3.3 23 39-61 49-71 (279)
301 1kht_A Adenylate kinase; phosp 96.5 0.0016 5.6E-08 49.4 3.3 23 37-59 3-25 (192)
302 1ly1_A Polynucleotide kinase; 96.5 0.0017 5.9E-08 48.7 3.3 22 38-59 3-24 (181)
303 4eun_A Thermoresistant glucoki 96.5 0.0015 5E-08 50.5 2.9 25 36-60 28-52 (200)
304 2nq2_C Hypothetical ABC transp 96.5 0.0017 5.7E-08 52.4 3.3 23 39-61 33-55 (253)
305 2yz2_A Putative ABC transporte 96.5 0.0016 5.6E-08 52.8 3.3 23 39-61 35-57 (266)
306 3co5_A Putative two-component 96.5 0.0022 7.4E-08 46.8 3.6 25 36-60 26-50 (143)
307 3lw7_A Adenylate kinase relate 96.4 0.0018 6.1E-08 48.2 3.2 20 38-57 2-21 (179)
308 3nh6_A ATP-binding cassette SU 96.4 0.0011 3.7E-08 55.1 2.1 23 39-61 82-104 (306)
309 3b9p_A CG5977-PA, isoform A; A 96.4 0.054 1.9E-06 44.0 12.4 25 36-60 53-77 (297)
310 1knq_A Gluconate kinase; ALFA/ 96.4 0.0017 5.8E-08 48.8 2.9 24 36-59 7-30 (175)
311 4b4t_J 26S protease regulatory 96.4 0.026 8.9E-07 48.5 10.6 25 36-60 181-205 (405)
312 3b85_A Phosphate starvation-in 96.4 0.0012 4E-08 51.7 2.0 22 39-60 24-45 (208)
313 1jbk_A CLPB protein; beta barr 96.4 0.0044 1.5E-07 46.5 5.2 46 12-60 21-66 (195)
314 3ec2_A DNA replication protein 96.4 0.0032 1.1E-07 47.5 4.5 25 37-61 38-62 (180)
315 2i3b_A HCR-ntpase, human cance 96.4 0.0013 4.4E-08 50.7 2.2 23 39-61 3-25 (189)
316 1tev_A UMP-CMP kinase; ploop, 96.4 0.002 7E-08 48.9 3.3 23 36-58 2-24 (196)
317 1u0l_A Probable GTPase ENGC; p 96.4 0.005 1.7E-07 50.8 5.9 64 86-165 64-128 (301)
318 2pjz_A Hypothetical protein ST 96.4 0.002 6.9E-08 52.3 3.3 23 39-61 32-54 (263)
319 2gza_A Type IV secretion syste 96.4 0.0017 5.7E-08 55.2 2.9 25 37-61 175-199 (361)
320 3kb2_A SPBC2 prophage-derived 96.4 0.002 6.9E-08 48.0 3.1 21 39-59 3-23 (173)
321 1cke_A CK, MSSA, protein (cyti 96.4 0.0019 6.7E-08 50.5 3.1 23 37-59 5-27 (227)
322 3lnc_A Guanylate kinase, GMP k 96.4 0.0011 3.8E-08 52.4 1.7 23 38-60 28-51 (231)
323 3jvv_A Twitching mobility prot 96.3 0.0014 4.8E-08 55.6 2.3 22 39-60 125-146 (356)
324 2rhm_A Putative kinase; P-loop 96.3 0.0025 8.4E-08 48.5 3.5 24 36-59 4-27 (193)
325 2qt1_A Nicotinamide riboside k 96.3 0.0028 9.5E-08 49.1 3.8 27 34-60 18-44 (207)
326 3fvq_A Fe(3+) IONS import ATP- 96.3 0.002 6.8E-08 54.7 3.0 23 39-61 32-54 (359)
327 3aez_A Pantothenate kinase; tr 96.3 0.002 7E-08 53.6 3.0 26 35-60 88-113 (312)
328 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0018 6.2E-08 54.3 2.7 23 39-61 173-195 (330)
329 2oap_1 GSPE-2, type II secreti 96.3 0.0021 7.2E-08 57.1 3.2 24 38-61 261-284 (511)
330 2bbs_A Cystic fibrosis transme 96.3 0.0024 8.1E-08 52.6 3.2 23 39-61 66-88 (290)
331 1d2n_A N-ethylmaleimide-sensit 96.3 0.0072 2.5E-07 48.8 6.1 35 26-60 52-87 (272)
332 1y63_A LMAJ004144AAA protein; 96.3 0.003 1E-07 48.1 3.6 25 36-60 9-33 (184)
333 3cm0_A Adenylate kinase; ATP-b 96.2 0.0026 9E-08 48.1 3.2 23 36-58 3-25 (186)
334 1jjv_A Dephospho-COA kinase; P 96.2 0.0028 9.5E-08 49.0 3.4 23 38-60 3-25 (206)
335 2plr_A DTMP kinase, probable t 96.2 0.0031 1.1E-07 48.6 3.6 24 36-59 3-26 (213)
336 2f1r_A Molybdopterin-guanine d 96.2 0.00099 3.4E-08 50.5 0.7 22 39-60 4-25 (171)
337 1aky_A Adenylate kinase; ATP:A 96.2 0.003 1E-07 49.4 3.5 24 36-59 3-26 (220)
338 3trf_A Shikimate kinase, SK; a 96.2 0.0029 9.8E-08 47.9 3.3 22 37-58 5-26 (185)
339 1z47_A CYSA, putative ABC-tran 96.2 0.0024 8.2E-08 54.1 3.1 23 39-61 43-65 (355)
340 3vaa_A Shikimate kinase, SK; s 96.2 0.0031 1.1E-07 48.6 3.5 23 37-59 25-47 (199)
341 3t61_A Gluconokinase; PSI-biol 96.2 0.0027 9.3E-08 48.9 3.2 23 37-59 18-40 (202)
342 3rlf_A Maltose/maltodextrin im 96.2 0.0025 8.5E-08 54.5 3.1 23 39-61 31-53 (381)
343 4a74_A DNA repair and recombin 96.2 0.002 6.8E-08 50.4 2.3 23 38-60 26-48 (231)
344 2if2_A Dephospho-COA kinase; a 96.2 0.0023 7.8E-08 49.3 2.6 22 38-59 2-23 (204)
345 3tui_C Methionine import ATP-b 96.2 0.0026 8.9E-08 54.1 3.1 23 39-61 56-78 (366)
346 2it1_A 362AA long hypothetical 96.2 0.0026 9E-08 54.0 3.1 23 39-61 31-53 (362)
347 2cdn_A Adenylate kinase; phosp 96.2 0.0037 1.3E-07 48.1 3.7 26 34-59 17-42 (201)
348 2yyz_A Sugar ABC transporter, 96.2 0.0026 9E-08 54.0 3.1 23 39-61 31-53 (359)
349 2jeo_A Uridine-cytidine kinase 96.2 0.0027 9.3E-08 50.7 3.0 25 36-60 24-48 (245)
350 1in4_A RUVB, holliday junction 96.1 0.0056 1.9E-07 51.2 5.0 25 36-60 50-74 (334)
351 3cwq_A Para family chromosome 96.1 0.011 3.8E-07 45.9 6.4 66 84-165 67-133 (209)
352 2c95_A Adenylate kinase 1; tra 96.1 0.0037 1.3E-07 47.6 3.6 23 36-58 8-30 (196)
353 3fb4_A Adenylate kinase; psych 96.1 0.0032 1.1E-07 49.0 3.2 20 39-58 2-21 (216)
354 1np6_A Molybdopterin-guanine d 96.1 0.003 1E-07 48.0 3.0 23 38-60 7-29 (174)
355 2ewv_A Twitching motility prot 96.1 0.0023 7.9E-08 54.6 2.5 24 37-60 136-159 (372)
356 1g29_1 MALK, maltose transport 96.1 0.0028 9.7E-08 54.0 3.1 23 39-61 31-53 (372)
357 1v43_A Sugar-binding transport 96.1 0.0029 1E-07 53.9 3.1 23 39-61 39-61 (372)
358 4b4t_H 26S protease regulatory 96.1 0.043 1.5E-06 47.9 10.4 26 35-60 241-266 (467)
359 1p9r_A General secretion pathw 96.1 0.0022 7.6E-08 55.5 2.3 23 38-60 168-190 (418)
360 1lv7_A FTSH; alpha/beta domain 96.1 0.0061 2.1E-07 48.7 4.8 24 37-60 45-68 (257)
361 4e22_A Cytidylate kinase; P-lo 96.1 0.0041 1.4E-07 49.9 3.7 26 36-61 26-54 (252)
362 3pfi_A Holliday junction ATP-d 96.1 0.0082 2.8E-07 50.0 5.7 40 21-60 39-78 (338)
363 3end_A Light-independent proto 96.1 0.021 7.2E-07 46.9 8.2 69 84-164 156-225 (307)
364 1lw7_A Transcriptional regulat 96.1 0.0022 7.4E-08 54.5 2.2 24 37-60 170-193 (365)
365 1uf9_A TT1252 protein; P-loop, 96.1 0.0041 1.4E-07 47.6 3.6 25 36-60 7-31 (203)
366 3dl0_A Adenylate kinase; phosp 96.1 0.0035 1.2E-07 48.7 3.2 20 39-58 2-21 (216)
367 2p65_A Hypothetical protein PF 96.1 0.0058 2E-07 45.7 4.3 46 12-60 21-66 (187)
368 3bos_A Putative DNA replicatio 96.1 0.0081 2.8E-07 47.0 5.3 25 36-60 51-75 (242)
369 2ehv_A Hypothetical protein PH 96.1 0.0033 1.1E-07 49.8 3.0 21 38-58 31-51 (251)
370 2v54_A DTMP kinase, thymidylat 96.0 0.0044 1.5E-07 47.5 3.7 25 36-60 3-27 (204)
371 1nks_A Adenylate kinase; therm 96.0 0.0037 1.3E-07 47.4 3.1 21 39-59 3-23 (194)
372 2jaq_A Deoxyguanosine kinase; 96.0 0.0038 1.3E-07 47.8 3.2 21 39-59 2-22 (205)
373 1svm_A Large T antigen; AAA+ f 96.0 0.0085 2.9E-07 51.2 5.6 35 26-60 158-192 (377)
374 3vfd_A Spastin; ATPase, microt 96.0 0.067 2.3E-06 45.5 11.2 25 36-60 147-171 (389)
375 1nn5_A Similar to deoxythymidy 96.0 0.0046 1.6E-07 47.8 3.6 24 36-59 8-31 (215)
376 3iij_A Coilin-interacting nucl 96.0 0.0041 1.4E-07 46.9 3.2 23 36-58 10-32 (180)
377 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.033 1.1E-06 46.3 9.0 25 36-60 44-68 (322)
378 1zd8_A GTP:AMP phosphotransfer 96.0 0.0042 1.4E-07 48.8 3.3 23 36-58 6-28 (227)
379 3d31_A Sulfate/molybdate ABC t 96.0 0.0024 8.3E-08 54.0 2.0 23 39-61 28-50 (348)
380 3gd7_A Fusion complex of cysti 96.0 0.0035 1.2E-07 53.8 3.0 23 39-61 49-71 (390)
381 2x8a_A Nuclear valosin-contain 96.0 0.0029 9.8E-08 51.6 2.3 22 39-60 46-67 (274)
382 2yvu_A Probable adenylyl-sulfa 96.0 0.005 1.7E-07 46.7 3.6 27 34-60 10-36 (186)
383 2wwf_A Thymidilate kinase, put 95.9 0.0045 1.5E-07 47.8 3.3 24 36-59 9-32 (212)
384 3u61_B DNA polymerase accessor 95.9 0.18 6.3E-06 41.4 13.3 24 36-59 47-70 (324)
385 1sq5_A Pantothenate kinase; P- 95.9 0.0041 1.4E-07 51.5 3.0 26 35-60 78-103 (308)
386 2bwj_A Adenylate kinase 5; pho 95.9 0.0024 8E-08 48.9 1.5 23 37-59 12-34 (199)
387 4fcw_A Chaperone protein CLPB; 95.9 0.0051 1.7E-07 50.5 3.6 24 37-60 47-70 (311)
388 1zak_A Adenylate kinase; ATP:A 95.9 0.0046 1.6E-07 48.4 3.1 23 36-58 4-26 (222)
389 2chg_A Replication factor C sm 95.9 0.012 4.1E-07 45.1 5.5 22 39-60 40-61 (226)
390 2pez_A Bifunctional 3'-phospho 95.9 0.0057 1.9E-07 46.1 3.5 24 36-59 4-27 (179)
391 2vli_A Antibiotic resistance p 95.9 0.0036 1.2E-07 47.2 2.3 23 36-58 4-26 (183)
392 1ixz_A ATP-dependent metallopr 95.9 0.0036 1.2E-07 50.1 2.4 22 39-60 51-72 (254)
393 1via_A Shikimate kinase; struc 95.8 0.0044 1.5E-07 46.5 2.8 21 39-59 6-26 (175)
394 3uk6_A RUVB-like 2; hexameric 95.8 0.013 4.5E-07 49.2 6.0 38 22-59 55-92 (368)
395 3kjh_A CO dehydrogenase/acetyl 95.8 0.019 6.6E-07 45.2 6.7 65 83-163 130-194 (254)
396 2ze6_A Isopentenyl transferase 95.8 0.0047 1.6E-07 49.7 3.0 21 39-59 3-23 (253)
397 3kta_A Chromosome segregation 95.8 0.0049 1.7E-07 46.5 2.9 21 39-59 28-48 (182)
398 1oxx_K GLCV, glucose, ABC tran 95.8 0.0024 8.2E-08 54.1 1.2 23 39-61 33-55 (353)
399 1e4v_A Adenylate kinase; trans 95.8 0.0054 1.8E-07 47.7 3.2 20 39-58 2-21 (214)
400 2vp4_A Deoxynucleoside kinase; 95.8 0.0051 1.7E-07 48.6 3.0 25 36-60 19-43 (230)
401 2bjv_A PSP operon transcriptio 95.8 0.011 3.7E-07 47.5 5.0 37 24-60 16-52 (265)
402 2w58_A DNAI, primosome compone 95.8 0.015 5.2E-07 44.5 5.7 23 38-60 55-77 (202)
403 1ukz_A Uridylate kinase; trans 95.8 0.0069 2.4E-07 46.5 3.6 23 36-58 14-36 (203)
404 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.026 8.7E-07 47.9 7.4 19 40-58 26-44 (365)
405 1vht_A Dephospho-COA kinase; s 95.7 0.0069 2.4E-07 47.2 3.6 24 36-59 3-26 (218)
406 1njg_A DNA polymerase III subu 95.7 0.012 3.9E-07 45.8 4.9 36 23-59 32-67 (250)
407 2pt5_A Shikimate kinase, SK; a 95.7 0.0063 2.2E-07 45.1 3.2 21 39-59 2-22 (168)
408 2c9o_A RUVB-like 1; hexameric 95.7 0.016 5.5E-07 50.6 6.1 41 19-59 45-85 (456)
409 3syl_A Protein CBBX; photosynt 95.7 0.017 5.8E-07 47.3 6.0 26 34-59 64-89 (309)
410 3r20_A Cytidylate kinase; stru 95.7 0.0067 2.3E-07 48.3 3.4 23 36-58 8-30 (233)
411 1hqc_A RUVB; extended AAA-ATPa 95.7 0.01 3.5E-07 48.9 4.6 40 20-59 21-60 (324)
412 3be4_A Adenylate kinase; malar 95.7 0.0058 2E-07 47.7 2.9 22 37-58 5-26 (217)
413 1qf9_A UMP/CMP kinase, protein 95.6 0.0081 2.8E-07 45.4 3.5 22 37-58 6-27 (194)
414 1nij_A Hypothetical protein YJ 95.6 0.0039 1.3E-07 51.9 1.7 22 39-60 6-27 (318)
415 1ak2_A Adenylate kinase isoenz 95.6 0.0088 3E-07 47.2 3.7 24 36-59 15-38 (233)
416 1iy2_A ATP-dependent metallopr 95.6 0.0054 1.8E-07 49.8 2.4 22 39-60 75-96 (278)
417 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0085 2.9E-07 48.3 3.5 23 37-59 4-26 (260)
418 1tue_A Replication protein E1; 95.5 0.014 5E-07 45.4 4.6 22 38-59 59-80 (212)
419 1e6c_A Shikimate kinase; phosp 95.5 0.0076 2.6E-07 44.9 3.0 21 39-59 4-24 (173)
420 3te6_A Regulatory protein SIR3 95.5 0.014 4.6E-07 48.7 4.7 27 34-60 42-68 (318)
421 2xb4_A Adenylate kinase; ATP-b 95.5 0.0082 2.8E-07 47.1 3.2 20 39-58 2-21 (223)
422 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.0058 2E-07 47.6 2.4 22 38-59 24-45 (235)
423 2z0h_A DTMP kinase, thymidylat 95.5 0.0087 3E-07 45.5 3.2 21 39-59 2-22 (197)
424 3b60_A Lipid A export ATP-bind 95.5 0.0076 2.6E-07 54.4 3.3 23 39-61 371-393 (582)
425 1uj2_A Uridine-cytidine kinase 95.5 0.0092 3.1E-07 47.7 3.4 24 36-59 21-44 (252)
426 2iyv_A Shikimate kinase, SK; t 95.5 0.008 2.7E-07 45.4 2.9 20 39-58 4-23 (184)
427 1yqt_A RNAse L inhibitor; ATP- 95.5 0.008 2.7E-07 53.8 3.3 24 38-61 48-71 (538)
428 2pbr_A DTMP kinase, thymidylat 95.5 0.0089 3E-07 45.3 3.2 21 39-59 2-22 (195)
429 2npi_A Protein CLP1; CLP1-PCF1 95.4 0.0053 1.8E-07 53.8 2.1 26 36-61 137-162 (460)
430 3eie_A Vacuolar protein sortin 95.4 0.011 3.7E-07 49.1 3.8 25 36-60 50-74 (322)
431 3b5x_A Lipid A export ATP-bind 95.4 0.0082 2.8E-07 54.2 3.2 24 38-61 370-393 (582)
432 3sr0_A Adenylate kinase; phosp 95.4 0.0097 3.3E-07 46.4 3.2 22 39-60 2-23 (206)
433 1zuh_A Shikimate kinase; alpha 95.4 0.01 3.5E-07 44.1 3.2 21 38-58 8-28 (168)
434 1m7g_A Adenylylsulfate kinase; 95.4 0.015 5.2E-07 45.0 4.3 25 36-60 24-48 (211)
435 3hws_A ATP-dependent CLP prote 95.4 0.017 5.7E-07 48.8 4.9 24 36-59 50-73 (363)
436 2qby_B CDC6 homolog 3, cell di 95.4 0.027 9.1E-07 47.5 6.2 25 36-60 44-68 (384)
437 1xjc_A MOBB protein homolog; s 95.3 0.011 3.9E-07 44.5 3.4 22 38-59 5-26 (169)
438 1gtv_A TMK, thymidylate kinase 95.3 0.0037 1.3E-07 48.4 0.7 21 39-59 2-22 (214)
439 2f6r_A COA synthase, bifunctio 95.3 0.011 3.8E-07 48.2 3.6 23 36-58 74-96 (281)
440 3nwj_A ATSK2; P loop, shikimat 95.3 0.0066 2.3E-07 48.8 2.1 23 37-59 48-70 (250)
441 1ojl_A Transcriptional regulat 95.3 0.019 6.6E-07 47.3 5.0 36 24-59 12-47 (304)
442 1cr0_A DNA primase/helicase; R 95.3 0.0072 2.4E-07 49.5 2.3 23 38-60 36-58 (296)
443 3qf4_B Uncharacterized ABC tra 95.3 0.008 2.7E-07 54.5 2.7 24 38-61 382-405 (598)
444 2yl4_A ATP-binding cassette SU 95.3 0.0076 2.6E-07 54.5 2.6 23 39-61 372-394 (595)
445 4a82_A Cystic fibrosis transme 95.2 0.0071 2.4E-07 54.6 2.2 23 39-61 369-391 (578)
446 3euj_A Chromosome partition pr 95.2 0.008 2.7E-07 52.9 2.4 23 38-60 30-52 (483)
447 3ozx_A RNAse L inhibitor; ATP 95.2 0.01 3.5E-07 53.1 3.1 23 39-61 27-49 (538)
448 1f2t_A RAD50 ABC-ATPase; DNA d 95.2 0.012 4E-07 43.3 3.0 20 39-58 25-44 (149)
449 3qf4_A ABC transporter, ATP-bi 95.2 0.0088 3E-07 54.1 2.7 23 39-61 371-393 (587)
450 1sxj_E Activator 1 40 kDa subu 95.2 0.0092 3.2E-07 49.9 2.6 20 40-59 39-58 (354)
451 3t15_A Ribulose bisphosphate c 95.2 0.013 4.6E-07 48.0 3.6 25 36-60 35-59 (293)
452 2cvh_A DNA repair and recombin 95.1 0.0089 3E-07 46.3 2.4 22 38-59 21-42 (220)
453 2qby_A CDC6 homolog 1, cell di 95.1 0.017 5.9E-07 48.4 4.3 38 23-60 29-68 (386)
454 3cf0_A Transitional endoplasmi 95.1 0.037 1.3E-06 45.4 6.2 25 36-60 48-72 (301)
455 2qmh_A HPR kinase/phosphorylas 95.1 0.012 4.1E-07 45.6 2.9 25 37-61 34-58 (205)
456 3exa_A TRNA delta(2)-isopenten 95.1 0.014 4.7E-07 48.5 3.5 24 37-60 3-26 (322)
457 3j16_B RLI1P; ribosome recycli 95.1 0.011 3.7E-07 53.7 3.1 24 38-61 104-127 (608)
458 3bk7_A ABC transporter ATP-bin 95.1 0.012 4.1E-07 53.4 3.3 24 38-61 118-141 (607)
459 1l8q_A Chromosomal replication 95.1 0.024 8.2E-07 46.9 4.9 25 36-60 36-60 (324)
460 3cr8_A Sulfate adenylyltranfer 95.1 0.0088 3E-07 53.6 2.3 25 36-60 368-392 (552)
461 3a8t_A Adenylate isopentenyltr 95.1 0.017 5.7E-07 48.5 3.8 24 37-60 40-63 (339)
462 1ltq_A Polynucleotide kinase; 95.1 0.014 4.7E-07 47.8 3.3 22 38-59 3-24 (301)
463 3ake_A Cytidylate kinase; CMP 95.0 0.017 5.8E-07 44.3 3.6 21 39-59 4-24 (208)
464 1n0w_A DNA repair protein RAD5 95.0 0.011 3.6E-07 46.6 2.4 23 38-60 25-47 (243)
465 2grj_A Dephospho-COA kinase; T 95.0 0.015 5.1E-07 44.7 3.2 24 36-59 11-34 (192)
466 2v1u_A Cell division control p 95.0 0.019 6.5E-07 48.2 4.1 38 23-60 28-67 (387)
467 2obl_A ESCN; ATPase, hydrolase 95.0 0.011 3.7E-07 49.9 2.6 25 37-61 71-95 (347)
468 2ce7_A Cell division protein F 94.9 0.031 1.1E-06 49.1 5.4 42 19-60 24-72 (476)
469 3ozx_A RNAse L inhibitor; ATP 94.9 0.015 5E-07 52.1 3.3 23 39-61 296-318 (538)
470 4eaq_A DTMP kinase, thymidylat 94.9 0.019 6.4E-07 45.4 3.6 25 36-60 25-49 (229)
471 1g8f_A Sulfate adenylyltransfe 94.9 0.018 6E-07 51.1 3.8 35 26-60 384-418 (511)
472 1sxj_C Activator 1 40 kDa subu 94.9 0.028 9.7E-07 46.8 4.8 22 39-60 48-69 (340)
473 2dpy_A FLII, flagellum-specifi 94.8 0.013 4.3E-07 51.1 2.6 26 36-61 156-181 (438)
474 2h92_A Cytidylate kinase; ross 94.8 0.016 5.4E-07 45.0 2.9 24 36-59 2-25 (219)
475 3umf_A Adenylate kinase; rossm 94.7 0.022 7.4E-07 44.8 3.6 23 37-59 29-51 (217)
476 3cio_A ETK, tyrosine-protein k 94.7 0.96 3.3E-05 36.9 13.7 65 86-165 215-279 (299)
477 1q3t_A Cytidylate kinase; nucl 94.7 0.022 7.4E-07 45.0 3.6 24 36-59 15-38 (236)
478 1yqt_A RNAse L inhibitor; ATP- 94.7 0.017 6E-07 51.6 3.3 23 39-61 314-336 (538)
479 4f4c_A Multidrug resistance pr 94.7 0.01 3.5E-07 58.6 1.9 22 39-60 1107-1128(1321)
480 3la6_A Tyrosine-protein kinase 94.7 0.81 2.8E-05 37.2 13.1 65 86-165 203-267 (286)
481 1ofh_A ATP-dependent HSL prote 94.7 0.035 1.2E-06 45.2 4.9 24 36-59 49-72 (310)
482 3upu_A ATP-dependent DNA helic 94.6 0.058 2E-06 47.1 6.4 45 11-58 22-66 (459)
483 3bk7_A ABC transporter ATP-bin 94.6 0.019 6.6E-07 52.0 3.3 23 39-61 384-406 (607)
484 2ph1_A Nucleotide-binding prot 94.6 0.85 2.9E-05 36.2 12.8 66 83-164 127-194 (262)
485 3crm_A TRNA delta(2)-isopenten 94.6 0.019 6.5E-07 47.9 3.0 23 38-60 6-28 (323)
486 3foz_A TRNA delta(2)-isopenten 94.5 0.027 9.1E-07 46.7 3.7 24 37-60 10-33 (316)
487 3d3q_A TRNA delta(2)-isopenten 94.5 0.02 6.9E-07 48.1 2.9 22 38-59 8-29 (340)
488 2dhr_A FTSH; AAA+ protein, hex 94.5 0.046 1.6E-06 48.4 5.4 43 18-60 38-87 (499)
489 1bif_A 6-phosphofructo-2-kinas 94.5 0.024 8E-07 49.8 3.5 25 36-60 38-62 (469)
490 2r62_A Cell division protease 94.5 0.017 5.8E-07 46.3 2.4 24 37-60 44-67 (268)
491 3pxg_A Negative regulator of g 94.5 0.039 1.4E-06 48.3 4.9 46 12-60 179-224 (468)
492 3j16_B RLI1P; ribosome recycli 94.4 0.02 7E-07 51.9 3.1 22 40-61 381-402 (608)
493 1nlf_A Regulatory protein REPA 94.4 0.017 5.9E-07 46.8 2.3 22 38-59 31-52 (279)
494 1a7j_A Phosphoribulokinase; tr 94.4 0.015 5E-07 47.8 1.8 24 36-59 4-27 (290)
495 4b4t_M 26S protease regulatory 94.4 0.023 7.7E-07 49.4 3.1 25 36-60 214-238 (434)
496 3d8b_A Fidgetin-like protein 1 94.3 0.052 1.8E-06 45.7 5.3 25 35-59 115-139 (357)
497 4f4c_A Multidrug resistance pr 94.3 0.022 7.4E-07 56.3 3.2 24 38-61 445-468 (1321)
498 3zvl_A Bifunctional polynucleo 94.3 0.029 1E-06 48.4 3.7 25 36-60 257-281 (416)
499 1sxj_D Activator 1 41 kDa subu 94.3 0.038 1.3E-06 45.9 4.3 22 39-60 60-81 (353)
500 3bfv_A CAPA1, CAPB2, membrane 94.2 1.2 4.3E-05 35.7 13.1 65 85-165 192-257 (271)
No 1
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=100.00 E-value=1.3e-32 Score=226.71 Aligned_cols=231 Identities=68% Similarity=1.074 Sum_probs=195.3
Q ss_pred CCccccccccccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEe
Q 026593 1 MGSLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR 80 (236)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (236)
|+|++ ++|.|++.++...++.+.++++++....++.++|+++|.+|+|||||+|+|++.....++..++.+........
T Consensus 1 ~~~~~-~~w~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~ 79 (262)
T 3def_A 1 MGSLV-REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79 (262)
T ss_dssp ------CBCHHHHTSCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEE
T ss_pred CCcch-hhHHHHhhccHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEE
Confidence 77864 88999999999999999999999998888899999999999999999999999987667777777777777777
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEe
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 160 (236)
.+.+..+.+|||||+.++....+.+.+.+++++..+++|+++||++++..+++..+..+++.+.+.++...+.|+++|+|
T Consensus 80 ~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 159 (262)
T 3def_A 80 TMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLT 159 (262)
T ss_dssp EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred EECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEe
Confidence 88999999999999998887778888888888887899999999999887788888899999999999887789999999
Q ss_pred CCCCCCCCCCchHHHHhhchHHHHHHHHhhccCCCCCccccchhHHHHhcCCCCCCCCCCceecccccCCcc
Q 026593 161 HAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKVQFLCSHSVH 232 (236)
Q Consensus 161 k~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (236)
|+|+.+.+...+++++....+.++++++.+.+......+...+|..+.++.+.|..+...+.++|+...|+.
T Consensus 160 K~Dl~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~ 231 (262)
T 3def_A 160 HAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIP 231 (262)
T ss_dssp CTTCCCSTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC
T ss_pred CcccCCCCCccHHHHHHhhhHHHHHHHHHHhCccccccccccCCEEEEeCCCCCCCCCCCCeECCCCCeeHH
Confidence 999986777889999988777889999887664332222234677778999999999999999999988875
No 2
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=100.00 E-value=8.1e-32 Score=222.94 Aligned_cols=230 Identities=64% Similarity=1.014 Sum_probs=190.8
Q ss_pred CCcc--ccccccccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEE
Q 026593 1 MGSL--LLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV 78 (236)
Q Consensus 1 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~ 78 (236)
|+|+ +.++|.|++.++.+.+..+.+.+.++...+...++|+++|.+|+|||||+|+|++.....++..++.+......
T Consensus 1 m~~~~~~~~~~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~ 80 (270)
T 1h65_A 1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMV 80 (270)
T ss_dssp -------CEECGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEE
T ss_pred CCcchhhhhhhcchhhccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEE
Confidence 7887 88999999999999999999999999988878899999999999999999999998876666666777667667
Q ss_pred EeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEE
Q 026593 79 SRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 158 (236)
Q Consensus 79 ~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv 158 (236)
.....+..+.+|||||+.++........+.++.++...++|+++||++++..+++..+..+++.+.+.++.+.+.|+++|
T Consensus 81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV 160 (270)
T 1h65_A 81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA 160 (270)
T ss_dssp EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEE
Confidence 77778899999999999888766666777777766667899999999988767888888999999999887777899999
Q ss_pred EeCCCCCCCCCCchHHHHhhchHHHHHHHHhhccCCCCCccccchhHHHHhcCCCCCCCCCCceecccccCCc
Q 026593 159 LTHAQLCPPDGLNYDVYCSKRSDALLKTIRLGAGLGKHEFEDYAVPVALVENSGRCSKNENDEKVQFLCSHSV 231 (236)
Q Consensus 159 ~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (236)
+||+|+.+++..++++|.+...+.+++.++.+.++.... +...+|.++.++.+.|+++...+++.+....|.
T Consensus 161 ~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~ 232 (270)
T 1h65_A 161 LTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDA-QASDIPVVLIENSGRCNKNDSDEKVLPNGIAWI 232 (270)
T ss_dssp EECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTTS-GGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHH
T ss_pred EECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhhh-hhccCCEEEEeCCCcccccCCCceECCCCCCcH
Confidence 999999866667899999887788888888877765432 234588889999999999998888887776664
No 3
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=175.77 Aligned_cols=190 Identities=19% Similarity=0.228 Sum_probs=121.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCc--CcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ--SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
...++|+|+|++|+|||||+|+|+|...... ..+ +.+..+......+.+..+.||||||+.+......+..+.+..+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHS-GTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCcc-CCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999999886332 222 4566666777788899999999999998776666666666665
Q ss_pred H--hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHHHhhchHHHHHHHHhh
Q 026593 113 L--LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVYCSKRSDALLKTIRLG 190 (236)
Q Consensus 113 l--~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~ 190 (236)
+ ..+++|++|+|++++ +++..+..+++.+.+.++.....|+++|+||+|+. ....+++++....+.++++++.+
T Consensus 106 ~~~~~~~~~~~l~v~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~--~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIFTRKDDL--GDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHTTTCCSEEEEEEETT--CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHHHHHHHHHH
T ss_pred HHhcCCCCcEEEEEeeCC--CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccC--CcccHHHHHHhchHHHHHHHHHc
Confidence 4 346899999997765 57777888999999888876668999999999986 34567778777667889999887
Q ss_pred c-cCCCCCcc---------c----cchhHHHHhcCCCCCCCCCCceecccccC
Q 026593 191 A-GLGKHEFE---------D----YAVPVALVENSGRCSKNENDEKVQFLCSH 229 (236)
Q Consensus 191 ~-~~~~~~~~---------~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (236)
+ ++..+... . ..|..++.++++.+|++++|++....+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~~~~ 234 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQK 234 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC--------------
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 4 44433211 1 35667778899999999999877665544
No 4
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.91 E-value=5e-24 Score=173.98 Aligned_cols=187 Identities=22% Similarity=0.233 Sum_probs=136.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCc-CcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh-HHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ-SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~-~~~~~~i~~~ 112 (236)
.++++|+|+|.+|+|||||+|+|++.+.......+ +.|..+......+.+..+.||||||+.+..... ++....+..+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 46799999999999999999999999875544332 356667777778889999999999997665333 3333444443
Q ss_pred H--hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccc-cCcEEEEEeCCCCCCCCCCchHHHHhhc-hHHHHHHHH
Q 026593 113 L--LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQI-WRKSLLVLTHAQLCPPDGLNYDVYCSKR-SDALLKTIR 188 (236)
Q Consensus 113 l--~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~-~~~~ivv~tk~D~~~~~~~~~~~~~~~~-~~~l~~~i~ 188 (236)
+ +.+++|++|+|++++ +++..+..+++.+.+.++... ..|+++++||+|+. ..++++++... ++.++++++
T Consensus 99 ~~~~~~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~---~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLG--RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA---GGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHTTCCSEEEEEEETT--BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT---TCCHHHHHHHCCCHHHHHHHH
T ss_pred HHhcCCCCCEEEEEEeCC--CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC---CCCHHHHHhhcccHHHHHHHH
Confidence 3 347999999997765 588888899999999988643 36899999999984 24688887753 477899999
Q ss_pred hhc-cCCCCCcc---------c----cchhHHHHhcCCCCCCCCCCceeccc
Q 026593 189 LGA-GLGKHEFE---------D----YAVPVALVENSGRCSKNENDEKVQFL 226 (236)
Q Consensus 189 ~~~-~~~~~~~~---------~----~~i~~~~~~~~~~~~~~~~~~~~~~~ 226 (236)
.|+ ++..++.. . ..|..++.+|++.+|++++|+.++..
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~ 225 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVL 225 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHG
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 874 55433211 1 46778888999999999998866543
No 5
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.82 E-value=8.4e-19 Score=143.69 Aligned_cols=153 Identities=22% Similarity=0.232 Sum_probs=112.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcC-cccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-EALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
....++|+|+|++|+|||||+|+|++...+..+..+. .+.........+.+..+.||||||+.++........+.+.++
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999999988655443333 555666667778899999999999988776655554444443
Q ss_pred H--hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEe-CCCCCCCCCCchHHHHhhc-hHHHHHHHH
Q 026593 113 L--LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT-HAQLCPPDGLNYDVYCSKR-SDALLKTIR 188 (236)
Q Consensus 113 l--~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t-k~D~~~~~~~~~~~~~~~~-~~~l~~~i~ 188 (236)
+ ..+++|++++|++++ +++..+..+++.+.+.++.....|.++|+| |+|+.+ ..+..++... .+.++++++
T Consensus 99 ~~~~~~~~d~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHTTCCSEEEEEEETT--CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHH
T ss_pred HHhcCCCCcEEEEEEeCC--CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHHHH
Confidence 3 237899999997765 477777888899999888765578888888 999962 2466665542 345666777
Q ss_pred hhc
Q 026593 189 LGA 191 (236)
Q Consensus 189 ~~~ 191 (236)
.++
T Consensus 174 ~~~ 176 (260)
T 2xtp_A 174 ACG 176 (260)
T ss_dssp HTT
T ss_pred HhC
Confidence 664
No 6
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.74 E-value=5.2e-17 Score=122.55 Aligned_cols=120 Identities=19% Similarity=0.197 Sum_probs=81.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~ 117 (236)
.+|+++|.+|+|||||+|++++.........++.+...........+..+.+|||||+................++ ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL--ED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHT--TT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHH--Hh
Confidence 4899999999999999999998875444555555556666667778889999999999765433333333333333 58
Q ss_pred CcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 118 IDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 118 ~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+|++++|++... .++..+..+.+.+... ..|+++|+||+|+.
T Consensus 80 ~~~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 80 AEVVLFAVDGRA-ELTQADYEVAEYLRRK-----GKPVILVATKVDDP 121 (161)
T ss_dssp CSEEEEEEESSS-CCCHHHHHHHHHHHHH-----TCCEEEEEECCCSG
T ss_pred CCEEEEEEECCC-cccHhHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 999999977653 3666666666666552 28999999999986
No 7
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=3.4e-17 Score=125.91 Aligned_cols=125 Identities=19% Similarity=0.194 Sum_probs=86.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHH-HHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~-~~~~i~~~l~ 114 (236)
+..+|+++|.+|+|||||+|+|++.....++..++.+.........+++..+.+|||||+.+....... .......++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~- 81 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI- 81 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH-
Confidence 568999999999999999999999875445555666655556666778888999999999764321111 111111122
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++.... .+..+..++..+.+.... ..|+++|+||+|+.
T Consensus 82 -~~ad~~i~v~D~~~~-~s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 82 -EQADRVLFMVDGTTT-DAVDPAEIWPEFIARLPA--KLPITVVRNKADIT 128 (172)
T ss_dssp -HTCSEEEEEEETTTC-CCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHH
T ss_pred -HhCCEEEEEEECCCC-CCHHHHHHHHHHHHhccc--CCCEEEEEECccCC
Confidence 489999999887542 223355666666665432 38999999999985
No 8
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.74 E-value=4.3e-17 Score=129.98 Aligned_cols=124 Identities=16% Similarity=0.184 Sum_probs=89.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-ccccccCcCcccceEEEEee-eCCeeEEEEeCCCCCCCCCCh---HHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVN---YQALELIK 110 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDTPG~~d~~~~~---~~~~~~i~ 110 (236)
..++|+++|.+|+|||||+|+|++.. ...++..++.+......... ..+..+.+|||||+.+..... +.+...+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 46899999999999999999999987 44555566666555555544 567799999999987754332 22333344
Q ss_pred HHHh-cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 111 GFLL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 111 ~~l~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++. ...+|+++||++... .++..+..++..+... ..|+++|+||+|+.
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARR-PLTELDRRMIEWFAPT-----GKPIHSLLTKCDKL 157 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHGGG-----CCCEEEEEECGGGS
T ss_pred HHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEeccccC
Confidence 4443 356899999976643 4677777777776652 28999999999986
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.74 E-value=5.2e-17 Score=135.99 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=89.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHH-HHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~-~~~i~~~l~ 114 (236)
+..+|+++|.+|+|||||+|+|++.+...++..+.+|...........+..+.+|||||+.+......+. ......++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l- 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL- 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT-
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH-
Confidence 3468999999999999999999999876666666666555555556678899999999998754322222 22222233
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++.+. .++..+..+++.+.+..+ ..|+++|+||+|+.
T Consensus 85 -~~ad~il~VvD~~~-~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 85 -ADVNAVVWVVDLRH-PPTPEDELVARALKPLVG---KVPILLVGNKLDAA 130 (301)
T ss_dssp -SSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGC
T ss_pred -hcCCEEEEEEECCC-CCChHHHHHHHHHHhhcC---CCCEEEEEECcccC
Confidence 68999999977653 366666666666655431 28999999999986
No 10
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.72 E-value=9.5e-17 Score=132.65 Aligned_cols=124 Identities=21% Similarity=0.321 Sum_probs=78.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccc-------CcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChH---
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNS-------FQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNY--- 103 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~--- 103 (236)
..++|+++|.+|+|||||+|+|++.+...... .++.+..........++. .+.+|||||+++......
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46899999999999999999999987654432 222222333334444443 899999999976543221
Q ss_pred HHHH----HHHHHHh-----------cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 104 QALE----LIKGFLL-----------NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 104 ~~~~----~i~~~l~-----------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.... .+..++. ...+|+++|++......+...+..+++.+.. ..|+++|+||+|+.
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 157 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGS
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCC
Confidence 1111 1122221 2458899999544433477888777777765 28999999999986
No 11
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.72 E-value=1.4e-16 Score=127.95 Aligned_cols=135 Identities=21% Similarity=0.263 Sum_probs=84.3
Q ss_pred HHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH-H-
Q 026593 27 LSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY-Q- 104 (236)
Q Consensus 27 ~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~-~- 104 (236)
.+.++......++|+++|.+|+|||||+|+|++.... +...+..+.........+.+..+.+|||||+.+...... .
T Consensus 19 ~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 97 (228)
T 2qu8_A 19 FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTI 97 (228)
T ss_dssp ---CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHH
T ss_pred eccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhH
Confidence 3445554456799999999999999999999998753 444444455555555566788999999999976432111 0
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCCC-CCCh-HHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 105 ALELIKGFLLNKTIDVLLYADRLDAY-RVDD-LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 105 ~~~~i~~~l~~~~~~~il~v~~~d~~-~~~~-~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
....+..+ ...+|++++|++++.. ++.. ....++..+...+. ..|+++|+||+|+.+.
T Consensus 98 ~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 98 EMTTITAL--AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHHHHHHH--HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC-
T ss_pred HHHHHHHh--hccccEEEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCc
Confidence 01222222 2578999999887542 2442 22345554444322 3899999999999743
No 12
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.70 E-value=1.3e-16 Score=131.85 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=89.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH---HHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY---QALELIKG 111 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~---~~~~~i~~ 111 (236)
++.++|+++|.+|+|||||+|+|+|.. ..++..++.+.........+.+..+.+|||||+.+...... ......+.
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 357899999999999999999999988 46677777777777777777888999999999988663110 11112234
Q ss_pred HHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
++....+|++++|++.. .+ .....+..++.+. ..|+++|+||+|+.+
T Consensus 80 ~~~~~~~d~ii~VvD~~--~~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 80 YILSGDADLLINVVDAS--NL-ERNLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (274)
T ss_dssp HHHHTCCSEEEEEEEGG--GH-HHHHHHHHHHHHH-----TCCEEEEEECHHHHH
T ss_pred HHhhcCCCEEEEEecCC--Ch-HHHHHHHHHHHhc-----CCCEEEEEECccchh
Confidence 44457899999996654 32 2334555555554 289999999999863
No 13
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=122.83 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=79.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|+|++.... ....+..+.........+++ ..+.+|||||..+.......+ +
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------~ 79 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY-------Y 79 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGG-------G
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHH-------h
Confidence 5689999999999999999999988753 22233333334444555666 578999999976554433221 1
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++.......-..++..+..... ..|+++|+||+|+.+.
T Consensus 80 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 80 --RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPER 128 (181)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGG
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchh
Confidence 589999999887642211112345566655443 3899999999998643
No 14
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.69 E-value=1.4e-16 Score=120.83 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=75.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC--CeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
+.++|+++|.+|+|||||+|++++..... ...++...........+ +..+.+|||||..+...... ..+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~---~~~---- 72 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRD---LYM---- 72 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHH---HHH----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHH---HHh----
Confidence 56899999999999999999999865322 12222222222222333 34789999999866543222 122
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +.. -..++..+...... ...|+++|+||+|+.+
T Consensus 73 --~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 73 --KNGQGFALVYSITAQSTFND-LQDLREQILRVKDT-EDVPMILVGNKCDLED 122 (167)
T ss_dssp --HHCSEEEEEEETTCHHHHHT-HHHHHHHHHHHHCC-SCCCEEEEEECTTCGG
T ss_pred --ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhhCc-CCCcEEEEEECccccc
Confidence 2689999998876422 222 23455556554322 2389999999999964
No 15
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.69 E-value=8.7e-16 Score=119.67 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=76.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-ccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH---HHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY---QALELIKG 111 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~---~~~~~i~~ 111 (236)
..++|+++|.+|+|||||+|+|++.. .......++.+....... . +..+.+|||||+.+...... ........
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 56899999999999999999999886 223333333333333332 2 34799999999877654432 22222333
Q ss_pred HHh-cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++. ...+|++++|+++.. ..+..+..+++++.+. ..|+++|+||+|+.
T Consensus 99 ~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRH-APSNDDVQMYEFLKYY-----GIPVIVIATKADKI 147 (195)
T ss_dssp HHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred HHhhhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 332 245699999977653 3666666666666552 28999999999996
No 16
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=122.96 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=82.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|+|++..... ...+..+.........+++ ..+.+|||||.......... ++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~ 86 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSS-------YY 86 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHH-------HH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHH-------HH
Confidence 45899999999999999999999876422 2223333334444555566 47899999997655433322 12
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGL 170 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~ 170 (236)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+.+..
T Consensus 87 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~~ 139 (196)
T 3tkl_A 87 --RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKVV 139 (196)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCS
T ss_pred --hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccccccccc
Confidence 4899999998876422112224566666665443 3799999999999754433
No 17
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.69 E-value=1e-16 Score=121.45 Aligned_cols=121 Identities=15% Similarity=0.182 Sum_probs=75.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
++.++|+++|.+|+|||||+|++++.... ....+++..........++ ..+.+|||||..+... . ...+
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~----~~~~ 72 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA---I----RDNY 72 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHH---H----HHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHH---H----HHHH
Confidence 46789999999999999999999987642 2222222223333334455 3789999999754321 1 1222
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
+ ..+|++++|++++...-......++..+...... ...|+++|+||+|+.+.
T Consensus 73 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 73 F--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp H--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGG
T ss_pred h--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECcccccc
Confidence 2 3789999998876422112224555666655432 13899999999999643
No 18
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.69 E-value=2.3e-16 Score=132.46 Aligned_cols=122 Identities=20% Similarity=0.290 Sum_probs=90.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC-CeeEEEEeCCCCCCCCCCh---HHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG-GFTLNIIDTPGLVEAGYVN---YQALELIKG 111 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~liDTPG~~d~~~~~---~~~~~~i~~ 111 (236)
++-.|+++|.+|+|||||+|+|+|.++..++..+.++........... +..+.+|||||+.+..... .........
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 557899999999999999999999998777777777777777777777 8899999999998765211 122222223
Q ss_pred HHhcCCCcEEEEEEeCCCCCCChHHHHH-HHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYRVDDLDRQI-IKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~~~~~~~~~-l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++ ..+|++++|++.+. ..+..+... +..+.. ...|+++|+||+|+.
T Consensus 89 ~l--~~aD~il~VvD~~~-~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 89 SL--EEADVILFMIDATE-GWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HH--HHCSEEEEEEETTT-BSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred Hh--hcCCEEEEEEeCCC-CCCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence 33 47999999977653 355555554 555554 238999999999986
No 19
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.69 E-value=1.3e-16 Score=120.67 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=75.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
+++++|+++|++|+|||||+|++++...... ..+.............+. .+.+|||||..+... .... +
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~----~ 71 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEK--YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS---MRDL----Y 71 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH---HHHH----H
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCccc--CCCCcceeEEEEEEECCEEEEEEEEECCCchhhHH---HHHH----H
Confidence 3568999999999999999999997764322 222222222333444554 589999999755421 1111 1
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
+ ..+|++++|+++........-..++..+.+.... ...|+++|+||+|+.+
T Consensus 72 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 72 I--KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLES 122 (167)
T ss_dssp H--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGG
T ss_pred h--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccc
Confidence 2 3689999998775421111223445555554332 2389999999999863
No 20
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.8e-16 Score=121.78 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=76.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++.........+..+..........++. .+.+|||||....... ...++
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~ 81 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV-------THAYY 81 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH-------HHHHc
Confidence 56899999999999999999999877532222233332333333344554 7899999997543221 11222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 168 (236)
..+|++++|++++.......-..++..+..... ...|+++|+||+|+.+.+
T Consensus 82 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 82 --RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHER 132 (180)
T ss_dssp --GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCC
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCccc
Confidence 478999999887542211112456666666543 238999999999997443
No 21
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.3e-16 Score=121.41 Aligned_cols=121 Identities=20% Similarity=0.140 Sum_probs=74.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
+.++|+++|.+|+|||||+|++++...... ..+... ..........+ ..+.+|||||..+.. ......+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~~~~~~~---- 72 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRES-YIPTVE-DTYRQVISCDKSICTLQITDTTGSHQFP---AMQRLSI---- 72 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSS-CCCCSC-EEEEEEEEETTEEEEEEEEECCSCSSCH---HHHHHHH----
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCcc-ccEEEEEEECCEEEEEEEEECCCchhhH---HHHHHhc----
Confidence 468999999999999999999998764211 111111 11122222333 468999999986542 1111222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++..........++..+.+..+.....|+++|+||+|+.+.
T Consensus 73 --~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 73 --SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp --HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 3689999998876422112224455666665433234899999999998643
No 22
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.68 E-value=2.5e-16 Score=119.40 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=64.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
.++|+++|.+|+|||||+|++++..........+.+. ............+.+|||||........... + .
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-------~--~ 71 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHC-------M--A 71 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhh-------h--h
Confidence 5799999999999999999999877544333322222 2222222233478899999986543322211 1 4
Q ss_pred CCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCC
Q 026593 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 169 (236)
.+|++++|++++....-.....++..+..... ....|+++|+||+|+.+.+.
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~ 123 (166)
T 3q72_A 72 MGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSRE 123 (166)
T ss_dssp -CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCC
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccc
Confidence 78999999887643211122344455544322 12389999999999974433
No 23
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.68 E-value=2.4e-16 Score=120.74 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=79.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
+..++|+++|.+|+|||||+|++++..... ...+..+.........+++ ..+.+|||||..+....... .+
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~---~~--- 84 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS---YI--- 84 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHH---HH---
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHH---Hh---
Confidence 356899999999999999999999766422 2222233233334444555 47899999997554332221 12
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 168 (236)
.++|++++|++++..........++..+....+. ..|+++|+||+|+.+.+
T Consensus 85 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 85 ---RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp ---HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECGGGGGGC
T ss_pred ---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccC
Confidence 3799999998875422112224556666655432 38999999999986433
No 24
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.68 E-value=3e-16 Score=125.31 Aligned_cols=127 Identities=13% Similarity=0.154 Sum_probs=81.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
++.+||+|+|.+|+|||||+++++...+... ..+.............++ ..+.||||+|+..+......+ +
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~-~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~---~--- 83 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNT-YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSY---I--- 83 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHH---H---
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCC-cCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHH---h---
Confidence 3568999999999999999999987653221 112212122222333344 467899999997765443322 2
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHH
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDV 174 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~ 174 (236)
.+++++++|++++... +.. -..|+..+....+.+ .|+++|+||+|+.+.+..+.++
T Consensus 84 ---~~a~~~ilv~di~~~~Sf~~-i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~~~e 140 (216)
T 4dkx_A 84 ---RDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEE 140 (216)
T ss_dssp ---TTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHHH
T ss_pred ---ccccEEEEEeecchhHHHHH-HHHHHHHHHHhcCCC--CeEEEEeeccchHhcCcccHHH
Confidence 4899999999986533 333 356777777766554 7999999999997544444443
No 25
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.7e-16 Score=123.84 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=76.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc-cccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT-VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
..++|+++|.+|+|||||+|++++..... ..+..+.+...........+..+.+|||||..+....... ++
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~- 93 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPM-------YY- 93 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHH-------HH-
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHH-------hh-
Confidence 46999999999999999999999876422 1122222222222223334458999999997554322211 12
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++..........++..+.+.... ..|+++|+||+|+.+
T Consensus 94 -~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 94 -RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLSD 142 (192)
T ss_dssp -TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred -ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECccccc
Confidence 4899999998875432112224566666655422 389999999999963
No 26
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.68 E-value=7.7e-16 Score=118.14 Aligned_cols=120 Identities=22% Similarity=0.240 Sum_probs=78.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
....++|+++|.+|+|||||+|++++... .....+++..........++. .+.+|||||..+.......++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~----- 78 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYM----- 78 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHH-----
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHH-----
Confidence 34668999999999999999999998753 222333333333344455553 788999999876655443322
Q ss_pred HHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +.. -..++..+..... ....|+++|+||+|+.+
T Consensus 79 ----~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 79 ----RAGHGFLLVFAINDRQSFNE-VGKLFTQILRVKD-RDDFPVVLVGNKADLES 128 (181)
T ss_dssp ----HHCSEEEEEEETTCHHHHHH-HHHHHHHHHHHHT-SSCCCEEEEEECGGGGG
T ss_pred ----hhCCEEEEEEeCCCHHHHHH-HHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 2689999998876422 222 2344445533332 12379999999999964
No 27
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=120.64 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=71.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|++|+|||||+|++++..........+.+ .......+++. .+.+|||||....... .. ...+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--~~---~~~~- 74 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGEDTTLVVVDTWEAEKLDKS--WS---QESC- 74 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEEEEEEEECCC-------C--HH---HHHT-
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEEEEEEEEecCCCCccchh--hh---HHhh-
Confidence 5689999999999999999999998754443332222 22333444554 6889999998653110 00 1111
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCc
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN 171 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~ 171 (236)
...+|++++|++++... +.. ...++..+..... ....|+++|+||+|+.+.+..+
T Consensus 75 -~~~~~~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~ 130 (175)
T 2nzj_A 75 -LQGGSAYVIVYSIADRGSFES-ASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVS 130 (175)
T ss_dssp -TTSCSEEEEEEETTCHHHHHH-HHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSC
T ss_pred -cccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccC
Confidence 24789999998876422 222 2345555554321 1238999999999997444333
No 28
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.68 E-value=7.5e-16 Score=135.41 Aligned_cols=120 Identities=19% Similarity=0.295 Sum_probs=80.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCC--CChHHHHHHHHHHHhc
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAG--YVNYQALELIKGFLLN 115 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~--~~~~~~~~~i~~~l~~ 115 (236)
.+|+++|.+|+|||||+|+|++.....+++.++.|.........+.+..+.+|||||+.... .....+.+....++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~-- 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI-- 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH--
Confidence 37999999999999999999999876677777777777777778899999999999987532 12233333333333
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++... .++..+..+..++++. ..|+++|+||+|+.
T Consensus 80 ~~ad~il~V~D~~~-~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 80 READLVLFVVDGKR-GITKEDESLADFLRKS-----TVDTILVANKAENL 123 (439)
T ss_dssp TTCSEEEEEEETTT-CCCHHHHHHHHHHHHH-----TCCEEEEEESCCSH
T ss_pred HhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence 68999999977643 4677776666666653 28999999999974
No 29
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.67 E-value=9.6e-16 Score=118.23 Aligned_cols=127 Identities=19% Similarity=0.219 Sum_probs=80.2
Q ss_pred HHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHH
Q 026593 30 LKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALE 107 (236)
Q Consensus 30 ~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~ 107 (236)
.+....+.++|+++|.+|+|||||+|++++..... ...+............++. .+.+|||||..+.......++
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~- 87 (183)
T 3kkq_A 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVD--DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYM- 87 (183)
T ss_dssp ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHH-
T ss_pred CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHH-
Confidence 34445577999999999999999999999765322 2222222233344445555 456699999876554443222
Q ss_pred HHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCC
Q 026593 108 LIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (236)
Q Consensus 108 ~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 169 (236)
..+|++++|++++... +.. ...++..+...... ...|+++|+||+|+.+.+.
T Consensus 88 --------~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 140 (183)
T 3kkq_A 88 --------RTGDGFLIVYSVTDKASFEH-VDRFHQLILRVKDR-ESFPMILVANKVDLMHLRK 140 (183)
T ss_dssp --------HHCSEEEEEEETTCHHHHHT-HHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCC
T ss_pred --------hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCcEEEEEECCCchhccC
Confidence 2689999998876422 222 23455555554322 2379999999999964333
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.67 E-value=1.7e-16 Score=120.60 Aligned_cols=119 Identities=12% Similarity=0.051 Sum_probs=75.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++....... .+............+.+ ..+.+|||||+.+...... .++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~-------~~~ 76 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNI-NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAP-------MYY 76 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTH-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCC-CCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccH-------hhC
Confidence 4689999999999999999999987642211 11111122222333343 5789999999854432221 112
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+
T Consensus 77 --~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 77 --RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTD 125 (170)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGG
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECCcccc
Confidence 5889999998875422112224566666654322 378999999999964
No 31
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.67 E-value=5e-16 Score=136.43 Aligned_cols=128 Identities=20% Similarity=0.262 Sum_probs=85.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH--HHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY--QALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~--~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++.....++..+++|.........+++..+.+|||||+.+.....+ +.+..++...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 45899999999999999999999988666677777666666666677888999999999865443110 1222222111
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 169 (236)
....+|++++|+++.. ..+..+..++..+.+. ..|+++|+||+|+.+.+.
T Consensus 254 ~~~~ad~~llv~D~~~-~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCCT
T ss_pred HHHhCCEEEEEEcCCc-CCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCcch
Confidence 1136899999977653 3667777776666542 289999999999975443
No 32
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4e-16 Score=121.52 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHh-cCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCC
Q 026593 18 ATQNKLIELLSKLKQ-ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV 96 (236)
Q Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~ 96 (236)
..+..+.+....+.. .....++|+++|.+|+|||||+|++++........ +..+ .....+.+..+.+|||||+.
T Consensus 28 ~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~----~~~~-~~~~~~~~~~~~l~Dt~G~~ 102 (193)
T 2ged_A 28 QWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV----SQEP-LSAADYDGSGVTLVDFPGHV 102 (193)
T ss_dssp HHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCC
T ss_pred HHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccc----cCCC-ceeeeecCCeEEEEECCCCc
Confidence 344444444443332 22356899999999999999999999876422100 0000 01112356688999999997
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcEEEEEEeCC-CCC-CChHHHHHHHHHHHhhC--ccccCcEEEEEeCCCCCCCCCCch
Q 026593 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLD-AYR-VDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLCPPDGLNY 172 (236)
Q Consensus 97 d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d-~~~-~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~~~~~~~ 172 (236)
+........+. ..+ ..+|++++|+++. ... +... ..++..+..... .....|+++|+||+|+.+ ....
T Consensus 103 ~~~~~~~~~~~---~~~--~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~--~~~~ 174 (193)
T 2ged_A 103 KLRYKLSDYLK---TRA--KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFT--ARPP 174 (193)
T ss_dssp BSSCCHHHHHH---HHG--GGEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT--CCCH
T ss_pred hHHHHHHHHHH---hhc--ccCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcC--CCCH
Confidence 76554433332 211 3589999997765 211 2111 233333333221 112389999999999963 3344
Q ss_pred HHHH
Q 026593 173 DVYC 176 (236)
Q Consensus 173 ~~~~ 176 (236)
++..
T Consensus 175 ~~~~ 178 (193)
T 2ged_A 175 SKIK 178 (193)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 33
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.67 E-value=8.9e-16 Score=116.95 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=77.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
..++|+++|++|+|||||+|++++... .++..++.+.........+++..+.+|||||+.+...... .......++..
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH-HHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch-hHHHHHHHHhc
Confidence 468999999999999999999998764 2333444444444445556788999999999977543221 11111223322
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++... + .....++..+.+. ..|+++|+||+|+.
T Consensus 80 ~~~~~~i~v~D~~~--~-~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 80 EKPDLVVNIVDATA--L-ERNLYLTLQLMEM-----GANLLLALNKMDLA 121 (165)
T ss_dssp HCCSEEEEEEETTC--H-HHHHHHHHHHHHT-----TCCEEEEEECHHHH
T ss_pred CCCCEEEEEecCCc--h-hHhHHHHHHHHhc-----CCCEEEEEEchHhc
Confidence 47899999976542 2 2223344444432 38999999999985
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.67 E-value=6.3e-16 Score=119.07 Aligned_cols=124 Identities=18% Similarity=0.204 Sum_probs=78.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
+.++|+++|.+|+|||||+|++++... .....+++..........++ ..+.+|||||..+.........
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~------- 75 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS------- 75 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGT-------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHH-------
Confidence 468999999999999999999996653 22222333333344445555 4678999999877654332211
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCc
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN 171 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~ 171 (236)
..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+.+...
T Consensus 76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~ 130 (181)
T 3t5g_A 76 --IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVIS 130 (181)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSC
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceec
Confidence 4799999998876422111223455555554332 238999999999996444333
No 35
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.67 E-value=6.2e-16 Score=119.59 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=76.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
.++++|+++|.+|+|||||+|+|++.... ....+.+..........++. .+.+|||||..+.......+.
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~------ 73 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM------ 73 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHH------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHH------
Confidence 35689999999999999999999987642 22333333333444445555 477899999876655443322
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++++..........++..+...... ...|+++|+||+|+.
T Consensus 74 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 74 ---RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLP 122 (189)
T ss_dssp ---HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSS
T ss_pred ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCc
Confidence 2689999998876422112223455555554332 238999999999996
No 36
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.67 E-value=3.5e-16 Score=128.03 Aligned_cols=118 Identities=11% Similarity=0.158 Sum_probs=86.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCC-----ChHHHHHHHHHH
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-----VNYQALELIKGF 112 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~-----~~~~~~~~i~~~ 112 (236)
.+|+++|.+|+|||||+|+|+|... .++..++.+.........+.+..+.+|||||+.+... ..++ ...+.+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e--~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDE--QIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHH--HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHH--HHHHHH
Confidence 3899999999999999999999874 5667777777777777888899999999999987653 2222 123344
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
+....+|++++|++... . .....+..++.+. ..|+++|+||+|+.+
T Consensus 79 ~~~~~~d~vi~VvDas~--~-~~~~~l~~~l~~~-----~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 79 VIDLEYDCIINVIDACH--L-ERHLYLTSQLFEL-----GKPVVVALNMMDIAE 124 (256)
T ss_dssp HHHSCCSEEEEEEEGGG--H-HHHHHHHHHHTTS-----CSCEEEEEECHHHHH
T ss_pred HhhCCCCEEEEEeeCCC--c-hhHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 55578999999966542 1 2223333343332 389999999999863
No 37
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.67 E-value=2.2e-16 Score=121.07 Aligned_cols=114 Identities=11% Similarity=0.094 Sum_probs=78.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
+.++|+++|.+|+|||||+|++++.... ....+..+.........+++..+.+|||||+.+...... . ..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~--~~ 76 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA-------R--GA 76 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-------S--SC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-------H--HH
Confidence 6789999999999999999999987743 222333333333445566788999999999876653321 1 11
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++++.. ........+..+. .. ..|+++|+||+|+.
T Consensus 77 ~~~d~~i~v~d~~~~-~~~~~~~~l~~~~---~~--~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 77 QVTDIVILVVAADDG-VMPQTVEAINHAK---AA--NVPIIVAINKMDKP 120 (178)
T ss_dssp CCCCEEEEEEETTCC-CCHHHHHHHHHHG---GG--SCCEEEEEETTTSS
T ss_pred hhCCEEEEEEECCCC-CcHHHHHHHHHHH---hC--CCCEEEEEECccCC
Confidence 579999999876542 3333344443332 22 38999999999996
No 38
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.67 E-value=6.6e-16 Score=117.11 Aligned_cols=118 Identities=15% Similarity=0.101 Sum_probs=77.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++..... ...+..+..........++ ..+.+|||||..+........ +
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~---- 75 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY---Y---- 75 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHH---H----
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHH---h----
Confidence 56899999999999999999999876422 1122222233333444444 478999999986654433222 1
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++..........++..+..... ..|+++|+||+|+.+
T Consensus 76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 76 --RGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLD 123 (168)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGG
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccCc
Confidence 489999999887542211122345566655542 389999999999863
No 39
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.67 E-value=2.6e-16 Score=121.43 Aligned_cols=122 Identities=15% Similarity=0.165 Sum_probs=77.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
.++.++|+++|.+|+|||||+|+|++.... ....+.+...........+. .+.+|||||..+... ... .
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~----~ 85 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA---IRD----N 85 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH---HHH----H
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHH---HHH----H
Confidence 446799999999999999999999987632 22222332333333444553 789999999765421 111 2
Q ss_pred HHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
++ ..+|++++|++++..........++..+...... ...|+++|+||+|+.+.
T Consensus 86 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 86 YF--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGG
T ss_pred Hh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 22 3789999998876422112224555666665432 13899999999998643
No 40
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=4.4e-16 Score=118.21 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=76.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
+.++|+++|.+|+|||||+|++++...... ..+..+.........+++ ..+.+|||||..+.... . ..++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---~----~~~~ 73 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAEN-KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL---A----PXYY 73 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG---H----HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh---h----hhhh
Confidence 468999999999999999999997764221 122222222223333444 47899999997543221 1 1222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+.
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 74 --RNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQE 123 (170)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGS
T ss_pred --ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccc
Confidence 5899999998876422112223455666655432 3899999999999643
No 41
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=8.2e-16 Score=121.47 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=79.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++.... ....+..+.........+++ ..+.+|||||..+.......+ +
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~---- 90 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY---Y---- 90 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHH---H----
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHH---h----
Confidence 4689999999999999999999977642 22223333334444555566 578999999986554433222 2
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|+++...........++..+...... ..|+++|+||+|+.
T Consensus 91 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~ 138 (213)
T 3cph_A 91 --RGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME 138 (213)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCS
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCc
Confidence 4899999998875422111124566666665432 37999999999994
No 42
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.67 E-value=1.2e-15 Score=125.09 Aligned_cols=121 Identities=19% Similarity=0.325 Sum_probs=87.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
+.++|+++|.+|+|||||+|+|+|... .++..++.+...........+..+.+|||||+.+......+ ....+.++..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID-EKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH-HHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH-HHHHHHHHhh
Confidence 468999999999999999999999875 35667777776677777778889999999999876543211 1122334444
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++.. .+. ....+...+.+. ..|+++|+||+|+..
T Consensus 82 ~~~d~ii~V~D~t--~~~-~~~~~~~~l~~~-----~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 82 GDADLVILVADSV--NPE-QSLYLLLEILEM-----EKKVILAMTAIDEAK 124 (258)
T ss_dssp SCCSEEEEEEETT--SCH-HHHHHHHHHHTT-----TCCEEEEEECHHHHH
T ss_pred cCCCEEEEEeCCC--chh-hHHHHHHHHHhc-----CCCEEEEEECcCCCC
Confidence 6899999996654 332 223444444432 389999999999853
No 43
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.67 E-value=8.5e-16 Score=121.04 Aligned_cols=122 Identities=14% Similarity=0.103 Sum_probs=80.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|+|++..... ...+..+.........+++. .+.+|||||..+.......+ +
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-------~ 78 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY-------Y 78 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGG-------G
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHh-------c
Confidence 45899999999999999999999876432 22222333333344445554 79999999987665433221 1
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 169 (236)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+.+.
T Consensus 79 --~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~ 130 (206)
T 2bcg_Y 79 --RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRV 130 (206)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCC
T ss_pred --cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccc
Confidence 4899999998875422112223456666555433 389999999999974433
No 44
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.67 E-value=4.7e-15 Score=115.17 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=81.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChH---HHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNY---QALELIKGF 112 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~---~~~~~i~~~ 112 (236)
..++|+++|.+|+|||||+|++++.......+.++.+....... .+..+.+|||||+........ ........+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 45799999999999999999999987544444444443333222 245688999999865543321 222222333
Q ss_pred Hh-cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+. ...+|++++|++... ..+..+..++.++... ..|+++|+||+|+.
T Consensus 99 ~~~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRI-PPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKV 146 (195)
T ss_dssp HHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred HhcCcCceEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEEChhcC
Confidence 32 256799999976543 3556666666676654 28999999999996
No 45
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.66 E-value=9e-16 Score=117.99 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=78.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
...++|+++|.+|+|||||+|++++....... .+..+.........+.+ ..+.+|||||......... .+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~ 81 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAP-------MY 81 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTS-CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTH-------HH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcC-CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhH-------HH
Confidence 35689999999999999999999987643221 12222222233333443 4789999999754332221 11
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 169 (236)
+ ..+|++++|++++..........++..+...... ..|+++|+||+|+.+.+.
T Consensus 82 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~ 134 (181)
T 2efe_B 82 Y--RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDARK 134 (181)
T ss_dssp H--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCC
T ss_pred h--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCccccccc
Confidence 2 5899999998775422112234566666655422 378999999999964433
No 46
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.66 E-value=6.7e-16 Score=121.23 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=79.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
.++.++|+++|.+|+|||||+|++++.... ....+++.........+++. .+.+|||||..+... ... .
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~----~ 81 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA---IRD----N 81 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH---HHH----H
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHH---HHH----H
Confidence 346799999999999999999999987632 22223333333334445554 789999999865421 111 1
Q ss_pred HHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 169 (236)
++ ..+|++++|++++...-......++..+...... ...|+++|+||+|+.+...
T Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~ 136 (206)
T 2bov_A 82 YF--RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQ 136 (206)
T ss_dssp HH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCC
T ss_pred HH--hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCcccccc
Confidence 22 3689999998876422111224555666655431 2389999999999964333
No 47
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.66 E-value=6e-16 Score=118.66 Aligned_cols=121 Identities=21% Similarity=0.184 Sum_probs=78.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC---eeEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG---FTLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
...++|+++|.+|+|||||+|++++..... ...+..+.........+.+ ..+.+|||||........... +
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~---~-- 77 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKY---I-- 77 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHH---H--
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHH---H--
Confidence 467999999999999999999999876421 1112222233344445554 689999999987655433222 2
Q ss_pred HHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCc-EEEEEeCCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLCP 166 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~-~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +.. -..++..+..........| +++|+||+|+.+
T Consensus 78 ----~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 78 ----YGAQGVLLVYDITNYQSFEN-LEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp ----TTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred ----hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 4899999998875422 221 2355566655432111244 899999999963
No 48
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=123.76 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=75.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEee--eCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS--KGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
+.++|+++|.+|+|||||+|+|++...... ..++.......... ..+..+.+|||||..+........ +
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-------~ 93 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEG--YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSF-------I 93 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSC--CCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGG-------T
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCC--CCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHH-------H
Confidence 679999999999999999999998774322 22222222222222 344678999999987765443222 1
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 169 (236)
..+|++++|++++..........++..+...... ...|+++|+||+|+.+.+.
T Consensus 94 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~ 146 (201)
T 3oes_A 94 --IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPERE 146 (201)
T ss_dssp --TTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCC
T ss_pred --hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccccc
Confidence 4799999998876422111223444444443221 2379999999999864433
No 49
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.66 E-value=3e-16 Score=138.91 Aligned_cols=124 Identities=20% Similarity=0.181 Sum_probs=64.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH-h
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL-L 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l-~ 114 (236)
+.++|+++|.+|+|||||+|+|++.+...++..++++.........+++..+.+|||||+.++....+... ++... .
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~g--i~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEG--IRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC----------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHH--HHHHHhh
Confidence 56899999999999999999999987666777777777776677778999999999999976432221110 11111 2
Q ss_pred cCCCcEEEEEEeCCCCCCChHHH-HHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDR-QIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
...+|++++|++.+.. .+..+. .....+.. .. ..|+++|+||+|+.+
T Consensus 310 ~~~aD~vl~VvD~s~~-~s~~~~~~~~~~l~~-l~---~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 310 MAEADLILYLLDLGTE-RLDDELTEIRELKAA-HP---AAKFLTVANKLDRAA 357 (476)
T ss_dssp CSSCSEEEEEEETTTC-SSGGGHHHHHHHHHH-CT---TSEEEEEEECTTSCT
T ss_pred cccCCEEEEEEECCCC-cchhhhHHHHHHHHh-cC---CCCEEEEEECcCCCC
Confidence 2689999999777542 333111 22222222 22 289999999999963
No 50
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.66 E-value=1.3e-15 Score=118.88 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=73.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-------------------------------
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG------------------------------- 84 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 84 (236)
..++|+++|.+|+|||||+|+|++..... ...+............+.+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 56999999999999999999999876421 1111111122222222222
Q ss_pred --------eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEE
Q 026593 85 --------FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSL 156 (236)
Q Consensus 85 --------~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~i 156 (236)
..+.+|||||..+...... .++ ..+|++++|++++..........++..+....+ .|++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~pii 151 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVP-------LYY--RGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIII 151 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHH-------HHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEE
T ss_pred cccCccceeEEEEEECCCcHHHHHHHH-------HHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEE
Confidence 6799999999765543322 122 489999999777542211122345555555433 8999
Q ss_pred EEEeCCCC
Q 026593 157 LVLTHAQL 164 (236)
Q Consensus 157 vv~tk~D~ 164 (236)
+|+||+|.
T Consensus 152 lv~NK~D~ 159 (208)
T 3clv_A 152 LVANKIDK 159 (208)
T ss_dssp EEEECTTC
T ss_pred EEEECCCc
Confidence 99999993
No 51
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.66 E-value=9.1e-16 Score=115.74 Aligned_cols=119 Identities=19% Similarity=0.175 Sum_probs=75.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
+.++|+++|.+|+|||||+|++++..... ...+.............+. .+.+|||||..+..... ...+
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~---~~~~---- 72 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVD--ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR---DQYM---- 72 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHH---HHHH----
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHH---HHhh----
Confidence 46899999999999999999999776422 1222222222333344443 57899999986543211 1122
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+
T Consensus 73 --~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 73 --RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA 122 (166)
T ss_dssp --HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence 2689999998775422111224555666555432 1389999999999864
No 52
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.66 E-value=3.5e-16 Score=119.01 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=74.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++..... ...+..+..........++ ..+.+|||||..+..... ..+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~- 75 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG-------PIY- 75 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCS-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhH-------HHH-
Confidence 46899999999999999999999776422 1222222222223334444 378899999975432211 111
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
...+|++++|++++..........++..+....+.+ .|+++|+||+|+.+.
T Consensus 76 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 76 -YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKE 126 (170)
T ss_dssp -STTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGG
T ss_pred -hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccc
Confidence 158899999988754221122235666666654333 899999999999643
No 53
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.66 E-value=8.7e-16 Score=116.67 Aligned_cols=118 Identities=18% Similarity=0.189 Sum_probs=75.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|++|+|||||+|++++..... ...+..+.........+++ ..+.+|||||..+........ +
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~---~---- 73 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY---Y---- 73 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHH---H----
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHH---h----
Confidence 35899999999999999999999876421 2222222223333444444 478999999986655443222 2
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|+++...........++..+...... ..|+++|+||+|+.
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~ 121 (170)
T 1g16_A 74 --RGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME 121 (170)
T ss_dssp --TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCT
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCC
Confidence 4899999998875422111224566666665432 38999999999994
No 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=121.46 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=75.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee--CCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK--GGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|+|++........ +............. .+..+.+|||||+.+........ +
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~---- 95 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR-TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY---Y---- 95 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC-CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHH---H----
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHH---h----
Confidence 45899999999999999999999876433221 11111122222223 34578999999997654433221 2
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|+++...........++..+..... ...|+++|+||+|+.+.
T Consensus 96 --~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 96 --RGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGG
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccc
Confidence 489999999877542111112345555544332 23899999999999643
No 55
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.65 E-value=3.7e-16 Score=118.61 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=74.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC--CeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++........ +..+........... +..+.+|||||..+..... ..++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~~ 76 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQE-STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA-------PMYY 76 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH-------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhh-------HHhc
Confidence 46899999999999999999999766432211 111111222223333 4578999999975432221 1122
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +.. ...++..+...... ..|+++|+||+|+.+
T Consensus 77 --~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 77 --RGAQAAIVVYDITNEESFAR-AKNWVKELQRQASP--NIVIALSGNKADLAN 125 (170)
T ss_dssp --TTCSEEEEEEETTCHHHHHH-HHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred --cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC--CCcEEEEEECccCcc
Confidence 5899999998875422 222 23455555554332 378999999999864
No 56
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.65 E-value=6.6e-16 Score=118.31 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=76.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++....... .+..............+ ..+.+|||||..+... .....+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~---- 85 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADC-PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA---VTRSYY---- 85 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSC-TTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH---HHHHHH----
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCeEEEEEEEECCCChHhhh---hHHHHh----
Confidence 4589999999999999999999987642211 11112122223333344 4789999999754321 222222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+.
T Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 86 --RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQ 135 (179)
T ss_dssp --HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred --ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccc
Confidence 3789999998875422112223556666655433 3899999999999643
No 57
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.65 E-value=7e-16 Score=122.55 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=77.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEe-eeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR-SKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
..++|+++|.+|+|||||+|+|++........ +........... ...+ ..+.+|||||..+.........
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~------ 82 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYN-ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYY------ 82 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEE-TTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHH------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCC-CccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHh------
Confidence 57999999999999999999999876432111 111111111222 1122 5799999999876654443221
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++..........++..+....+.+ .|+++|+||+|+.+
T Consensus 83 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 131 (218)
T 4djt_A 83 ---IGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKN 131 (218)
T ss_dssp ---TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC-
T ss_pred ---hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence 48999999988764221122245667776665443 79999999999863
No 58
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.65 E-value=3e-15 Score=117.18 Aligned_cols=126 Identities=14% Similarity=0.059 Sum_probs=76.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEee-eCCeeEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRS-KGGFTLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
.....++|+++|.+|+|||||++.+++............+......... .....+.+|||||...+..........+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~-- 93 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF-- 93 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH--
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc--
Confidence 3446799999999999999999999886432211111111122222221 3446899999999877554331001122
Q ss_pred HHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|+++... +......+..++.+........|+++|+||+|+.
T Consensus 94 ----~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 94 ----RGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp ----HTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred ----ccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 279999999887653 3344455555555543222348999999999986
No 59
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.3e-15 Score=119.07 Aligned_cols=119 Identities=14% Similarity=0.163 Sum_probs=76.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
...++|+++|.+|+|||||+|++++...... ..++...........++ ..+.+|||||+.+ .......+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~--- 96 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDPTLESTYRHQATIDDEVVSMEILDTAGQED----TIQREGHM--- 96 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----CHHHHHHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCCCCceEEEEEEECCEEEEEEEEECCCCCc----ccchhhhh---
Confidence 3679999999999999999999998764322 11222222223333444 4689999999876 22222222
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++... +.. -..++..+...... ...|+++|+||+|+.+.
T Consensus 97 ---~~~d~iilv~D~~~~~s~~~-~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 97 ---RWGEGFVLVYDITDRGSFEE-VLPLKNILDEIKKP-KNVTLILVGNKADLDHS 147 (196)
T ss_dssp ---HHCSEEEEEEETTCHHHHHT-HHHHHHHHHHHHTT-SCCCEEEEEECGGGGGG
T ss_pred ---ccCCEEEEEEECcCHHHHHH-HHHHHHHHHHhhCC-CCCcEEEEEECcccccc
Confidence 3689999998875422 222 23455566554321 23899999999999643
No 60
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.65 E-value=4.3e-15 Score=116.02 Aligned_cols=116 Identities=10% Similarity=0.088 Sum_probs=73.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
++.++|+++|.+|+|||||+|++++...... .+ +.........+.+..+.+|||||..+........ +
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~----- 94 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHY---F----- 94 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-----CTTHHHH---H-----
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc--CC--cCceeEEEEEECCEEEEEEECCCCHhHHHHHHHH---h-----
Confidence 4679999999999999999999998764321 11 2223334455678899999999997654433222 2
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +... ..++..+..... ....|+++|+||+|+.
T Consensus 95 -~~~d~iilv~D~~~~~s~~~~-~~~l~~~~~~~~-~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 95 -QNTQGLIFVVDSNDRERVQES-ADELQKMLQEDE-LRDAVLLVFANKQDMP 143 (192)
T ss_dssp -HTCCEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred -ccCCEEEEEEECCCHHHHHHH-HHHHHHHhcccc-cCCCeEEEEEECCCCC
Confidence 3899999998875422 2222 233333332211 1238999999999995
No 61
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.65 E-value=8.4e-16 Score=116.96 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=76.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.+.++|+++|.+|+|||||+|++++...... .+ +.........+.+..+.+|||||..+..... ..++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~- 72 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTT--IP--TIGFNVETVTYKNLKFQVWDLGGLTSIRPYW-------RCYY- 72 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC--CC--CSSEEEEEEEETTEEEEEEEECCCGGGGGGG-------GGGC-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCc--CC--cCccceEEEEECCEEEEEEECCCChhhhHHH-------HHHh-
Confidence 3579999999999999999999987764321 11 2223344556678899999999985432211 1112
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++... +... ..++..+..... ....|+++|+||+|+.+
T Consensus 73 -~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 73 -SNTDAVIYVVDSCDRDRIGIS-KSELVAMLEEEE-LRKAILVVFANKQDMEQ 122 (171)
T ss_dssp -TTCSEEEEEEETTCCTTHHHH-HHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred -ccCCEEEEEEECCCHHHHHHH-HHHHHHHHhchh-hCCCEEEEEEECCCCcC
Confidence 5899999998875432 3322 233333332211 12389999999999963
No 62
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.65 E-value=1e-15 Score=118.96 Aligned_cols=122 Identities=12% Similarity=0.133 Sum_probs=77.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
+..++|+++|.+|+|||||+|++++....... .+..+..........++ ..+.+|||||..+... .....+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~ 90 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT-EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHY 90 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC-CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh------hhhHHH
Confidence 35699999999999999999999977643221 22222223333444455 4789999999643210 112222
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
+ ..+|++++|++++...-......++..+..... ....|+++|+||+|+.+
T Consensus 91 ~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 91 Y--RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS 141 (189)
T ss_dssp H--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG
T ss_pred h--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 2 589999999887542211122446666666542 22389999999999963
No 63
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.64 E-value=1.5e-15 Score=118.32 Aligned_cols=119 Identities=14% Similarity=0.089 Sum_probs=77.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++....... .+..+..........++ ..+.+|||||........... +
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~---- 91 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY---Y---- 91 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHH---H----
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHH---h----
Confidence 4589999999999999999999987643222 12222223333444455 478999999986655443222 2
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+
T Consensus 92 --~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 92 --RGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLES 140 (191)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred --ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCC
Confidence 4899999998875422111123456666554332 389999999999963
No 64
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.64 E-value=9.3e-16 Score=119.18 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=76.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC--CeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|.+|+|||||+|++++....... .+..+........... +..+.+|||||..+....... ++
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~- 92 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTA-------YY- 92 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSC-CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGG-------GG-
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCc-CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHH-------hc-
Confidence 589999999999999999999987643221 1222222222223333 347899999998765543321 12
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+.
T Consensus 93 -~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 93 -RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDLEDE 142 (189)
T ss_dssp -TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc
Confidence 4899999998875422112224566666655322 3899999999999643
No 65
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=3.4e-15 Score=115.80 Aligned_cols=116 Identities=8% Similarity=0.045 Sum_probs=74.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.+.++|+++|.+|+|||||+|++++.......+ ... .......+++..+.+|||||+.+....... ++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--t~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~- 81 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP--TIG--SNVEEIVINNTRFLMWDIGGQESLRSSWNT-------YY- 81 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC--CSC--SSCEEEEETTEEEEEEECCC----CGGGHH-------HH-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcC--CCc--cceEEEEECCEEEEEEECCCCHhHHHHHHH-------Hh-
Confidence 477999999999999999999999776532222 111 222334457889999999999665433221 12
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +... ..++..+..... ....|+++|+||+|+.
T Consensus 82 -~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 82 -TNTEFVIVVVDSTDRERISVT-REELYKMLAHED-LRKAGLLIFANKQDVK 130 (187)
T ss_dssp -TTCCEEEEEEETTCTTTHHHH-HHHHHHHHTSGG-GTTCEEEEEEECTTST
T ss_pred -cCCCEEEEEEeCCCHHHHHHH-HHHHHHHHhchh-hCCCeEEEEEECCCCc
Confidence 4899999998875432 3222 334444443311 1238999999999996
No 66
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.64 E-value=4.9e-16 Score=123.50 Aligned_cols=118 Identities=20% Similarity=0.245 Sum_probs=67.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
....++|+++|.+|+|||||++++++..... ...++...........++. .+.+|||||..+.......
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~------- 101 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPL------- 101 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHH-------
Confidence 4467999999999999999999999876422 1222222222333444554 7899999998654322211
Q ss_pred HHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++ .++|++++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 102 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 102 FY--PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLR 151 (214)
T ss_dssp -----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGG
T ss_pred Hh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhh
Confidence 11 4899999998875421 32222346666665543 28999999999996
No 67
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.64 E-value=7.3e-16 Score=136.10 Aligned_cols=134 Identities=19% Similarity=0.257 Sum_probs=91.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh--HHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN--YQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~--~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++.+...++..++.+.........+++..+.+|||||+.+..... .+....++...
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 4689999999999999999999998766677777766666555666788899999999986543211 11222222111
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCchHHH
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNYDVY 175 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~ 175 (236)
....+|++++|++... .++..+..++..+.+. ..|+++|+||+|+.+.+....+++
T Consensus 274 ~~~~ad~~llviD~~~-~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~ 329 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKDESTMKEF 329 (456)
T ss_dssp HHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCCSSHHHHH
T ss_pred HHhhCCEEEEEEeCCC-CcCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCCchHHHHHH
Confidence 1247899999966543 4777778887777662 289999999999975544444443
No 68
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.64 E-value=1.4e-15 Score=125.31 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=87.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
+.++|+++|++|+|||||+|+|+|... .++..++.+.........+.+..+.+|||||+.+......+. ...+.++..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDE-LIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHH-HHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHH-HHHHHhhhc
Confidence 568999999999999999999999875 566677777777777778889999999999998765433221 123345555
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++.. .. .....+...+.+. + ..|+++|+||+|+.
T Consensus 80 ~~~d~vi~v~D~~--~~-~~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 80 GNADVIVDIVDST--CL-MRNLFLTLELFEM-E---VKNIILVLNKFDLL 122 (271)
T ss_dssp TCCSEEEEEEEGG--GH-HHHHHHHHHHHHT-T---CCSEEEEEECHHHH
T ss_pred cCCcEEEEEecCC--cc-hhhHHHHHHHHhc-C---CCCEEEEEEChhcC
Confidence 7899999996554 22 2223333334332 1 17999999999975
No 69
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.64 E-value=2.2e-15 Score=116.94 Aligned_cols=122 Identities=18% Similarity=0.184 Sum_probs=73.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHH
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIK 110 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~ 110 (236)
.+++.++|+++|.+|+|||||+|+|++..... ...+.+..........++. .+.+|||||..+..... .
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~ 87 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR-------D 87 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC----------------
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCcc--ccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHH-------H
Confidence 34567999999999999999999999776322 2222222233334444554 58999999975443211 1
Q ss_pred HHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 111 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 111 ~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++ ..+|++++|++++..........++..+...... ...|+++|+||+|+.+
T Consensus 88 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 88 QYM--RTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT 140 (190)
T ss_dssp --C--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred Hhh--CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence 122 4799999998876422111223455556554431 2389999999999863
No 70
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.64 E-value=6.6e-16 Score=120.56 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=73.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|+|++...... ..+..+.........+++ ..+.+|||||..+.. .. ...++
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---~~----~~~~~ 96 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN---SI----TSAYY 96 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH---HH----HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH---HH----HHHHh
Confidence 458999999999999999999998764322 122222233334444555 478999999974321 11 12222
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +.. -..++..+...... ..|+++|+||+|+.+
T Consensus 97 --~~~d~iilV~D~~~~~s~~~-~~~~~~~i~~~~~~--~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 97 --RSAKGIILVYDITKKETFDD-LPKWMKMIDKYASE--DAELLLVGNKLDCET 145 (192)
T ss_dssp --HHCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred --cCCCEEEEEEECcCHHHHHH-HHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 3789999998875422 221 23455666555432 389999999999863
No 71
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.64 E-value=1.2e-15 Score=117.94 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=77.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++...... ..+..+..........++ ..+.+|||||..+. ......++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~ 80 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDD-SNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSYY 80 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTT-CCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHH
Confidence 458999999999999999999998764322 122222223333444555 47899999997432 11122222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+.
T Consensus 81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 81 --RGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDAD 130 (186)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGG
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccc
Confidence 5899999998875422111123455555554432 3899999999999633
No 72
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.64 E-value=4.2e-16 Score=120.30 Aligned_cols=121 Identities=12% Similarity=0.171 Sum_probs=57.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++.... ....+..+.........+++ ..+.+|||||..+..... ..++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~ 78 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------TAYY 78 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C-------CTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH-------HHHH
Confidence 4589999999999999999999976532 11112222222333444565 578999999985543211 1111
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 169 (236)
..+|++++|++++... +. ....++..+...... ..|+++|+||+|+.+.+.
T Consensus 79 --~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~ 130 (183)
T 2fu5_C 79 --RGAMGIMLVYDITNEKSFD-NIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQ 130 (183)
T ss_dssp --TTCSEEEEEEETTCHHHHH-HHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCC
T ss_pred --hcCCEEEEEEECcCHHHHH-HHHHHHHHHHHhcCC--CCCEEEEEECccCCccCc
Confidence 4899999998875422 21 223456666554332 379999999999964333
No 73
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.64 E-value=8e-16 Score=120.92 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=73.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|+|++...... ..+..+..........++ ..+.+|||||..+....... ++
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~-------~~ 95 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQD-SNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRS-------YY 95 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHH-------HH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCcc-CCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHH-------Hh
Confidence 569999999999999999999998764322 122222223333444555 58999999997443322221 12
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+.
T Consensus 96 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 96 --RGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDPE 145 (200)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGGG
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccc
Confidence 4899999998875422111123455555554432 3899999999998633
No 74
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.64 E-value=1.5e-15 Score=127.39 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=79.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee-CCeeEEEEeCCCCCCCCCChHHHHH-HHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALE-LIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDTPG~~d~~~~~~~~~~-~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++.........++.|.........+ ++..+.+|||||..+. .+.+.. ....++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---MENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---HHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---hhhhhhhHHHHHh
Confidence 45799999999999999999999875444444555555555544444 5678999999998533 000101 111122
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++.......-..+..++.+........|+++|+||+|+.
T Consensus 79 --~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 79 --QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp --TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred --ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 58999999988754321111223444444433222238999999999996
No 75
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=119.18 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=75.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
....++|+++|.+|+|||||++++++... .....+++..........++. .+.+|||||..+.......
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~------- 87 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPL------- 87 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGG-------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHh-------
Confidence 34679999999999999999999998763 222333333333344455664 5679999999776544321
Q ss_pred HHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++ .++|++++|++++... +......|+..+....+ ..|+++|+||+|+.
T Consensus 88 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 88 CY--TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLR 137 (201)
T ss_dssp GG--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGG
T ss_pred hc--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence 11 4899999998875422 32222246666666543 38999999999986
No 76
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.63 E-value=6.7e-16 Score=134.61 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=83.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe-eEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF-TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
..++|+++|.+|+|||||+|+|++.+...++..++.+.........+.+. .+.+|||||+.++........+....++
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l- 111 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF- 111 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH-
Confidence 46899999999999999999999988755666666666666666666665 8999999999887644322222222233
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 168 (236)
.++|++++| +|. .....+..++..+.+. ..|+++|+||+|+.+..
T Consensus 112 -~~aD~vllV--vD~-~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 112 -YRADCGILV--TDS-APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp -TSCSEEEEE--CSS-SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCC
T ss_pred -hcCCEEEEE--EeC-CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCcc
Confidence 589999999 454 5667778888888776 28999999999997443
No 77
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.63 E-value=2.8e-15 Score=113.93 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=70.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCC-ChHHHHHHHHHHH
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGY-VNYQALELIKGFL 113 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~-~~~~~~~~i~~~l 113 (236)
.++|+++|.+|+|||||+|++++........ +..+..........++ ..+.+|||||..+... ..... +
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~---~---- 73 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHC---L---- 73 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--------CHH---H----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhh---h----
Confidence 3799999999999999999999766433222 2222333334444555 4678999999976432 11111 1
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 169 (236)
..+|++++|++++... +.. ...++..+...... ...|+++|+||+|+.+.+.
T Consensus 74 --~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~ 126 (169)
T 3q85_A 74 --QTGDAFLIVFSVTDRRSFSK-VPETLLRLRAGRPH-HDLPVILVGNKSDLARSRE 126 (169)
T ss_dssp --HHCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCC
T ss_pred --ccCCEEEEEEECCChHHHHH-HHHHHHHHHhcccC-CCCCEEEEeeCcchhhccc
Confidence 2589999998886532 222 23455555554331 1389999999999863333
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.1e-15 Score=119.35 Aligned_cols=120 Identities=19% Similarity=0.135 Sum_probs=75.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
...++|+++|.+|+|||||+|+|++...... ..+............++ ..+.+|||||..+.. .... .+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~----~~ 76 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDT--YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP---AMQR----LS 76 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCT--TSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH---HHHH----HH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCc--ccCccccceeEEEEECCEEEEEEEEeCCChHHhH---HHHH----Hh
Confidence 3679999999999999999999998654221 11111111222223333 478999999975542 1111 12
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
+ ..+|++++|++++... +.. ...++..+.+..+.....|+++|+||+|+.+
T Consensus 77 ~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 77 I--SKGHAFILVFSVTSKQSLEE-LGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp H--HHCSEEEEEEETTCHHHHHT-THHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred h--ccCCEEEEEEECcCHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 2 3689999998876422 222 2345555665544323489999999999963
No 79
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.63 E-value=1.3e-15 Score=118.93 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=77.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
...++|+++|.+|+|||||+|++++.... ....++...........++. .+.+|||||..+....... +
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~ 91 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPL-------S 91 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGG-------G
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHh-------h
Confidence 35699999999999999999999987742 22222222222333444554 5699999997654433221 1
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
+ .++|++++|++++... +......++..+...... .|+++|+||+|+.+
T Consensus 92 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 92 Y--ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLVGLKVDLRK 141 (194)
T ss_dssp C--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---SEEEEEEECGGGCC
T ss_pred c--cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhcc
Confidence 1 4899999998876422 222224566666655432 89999999999964
No 80
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=117.65 Aligned_cols=119 Identities=9% Similarity=0.109 Sum_probs=77.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.+.++|+++|.+|+|||||+|++++......... .+.........+++..+.+|||||..+...... .++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~- 88 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL--PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWE-------HYY- 88 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC--CCSSEEEEEEECSSCEEEEEEECCSTTTGGGGG-------GGG-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC--CccceeEEEEEECCEEEEEEECCCCHHHHHHHH-------HHH-
Confidence 3569999999999999999999998873222211 222344455566788999999999865532221 122
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCc-cccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +... ..++..+...... ....|+++|+||+|+.
T Consensus 89 -~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 89 -KEGQAIIFVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp -GGCSEEEEEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred -hcCCEEEEEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 4789999997775321 2221 2344444433211 0238999999999996
No 81
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.63 E-value=1.8e-15 Score=117.03 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=75.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.+.++|+++|.+|+|||||+|++++... ....+ +.........+++..+.+|||||+.+... ....+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~-- 82 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV--DTISP--TLGFNIKTLEHRGFKLNIWDVGGQKSLRS-------YWRNY-- 82 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCCC--CSSEEEEEEEETTEEEEEEEECCSHHHHT-------TGGGG--
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC--Ccccc--cCccceEEEEECCEEEEEEECCCCHhHHH-------HHHHH--
Confidence 4679999999999999999999998772 11112 22233445556788999999999843211 11112
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..++|++++|++++... +... ..++..+..... ....|+++|+||+|+.+
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 83 FESTDGLIWVVDSADRQRMQDC-QRELQSLLVEER-LAGATLLIFANKQDLPG 133 (186)
T ss_dssp CTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred hcCCCEEEEEEECcCHHHHHHH-HHHHHHHHhChh-cCCCcEEEEEeCccCCC
Confidence 25899999998875422 2221 233333333211 12389999999999963
No 82
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.63 E-value=2.8e-15 Score=116.57 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=74.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
...++|+++|.+|+|||||++++++.... ....++...........++ ..+.+|||||....... . ..+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~---~~~--- 89 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-E---RYL--- 89 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-H---HHH---
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-H---HHH---
Confidence 36699999999999999999999987632 2222222222222333344 46889999998765542 1 122
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCc-cccCcEEEEEeCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +.. -..++..+...... ....|+++|+||+|+.+
T Consensus 90 ---~~~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 90 ---NWAHAFLVVYSVDSRQSFDS-SSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp ---TTCSEEEEEEETTCHHHHHH-HHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred ---hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 4799999998886422 322 23455666554321 12389999999999963
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.63 E-value=2.1e-15 Score=117.74 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=76.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
.....+|+++|.+|+|||||+|+|++.....+...+ +...........+..+.+|||||+........ .++
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~ 84 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKFRGLWE-------TYY 84 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGGGGGGG-------GGC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhHHHHHH-------HHH
Confidence 336689999999999999999999998854422122 22233344457788999999999854432221 112
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCc------cccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK------QIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~------~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++... +... ..++..+...... ....|+++|+||+|+.+
T Consensus 85 --~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 85 --DNIDAVIFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp --TTCSEEEEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred --hcCCEEEEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 5899999998876422 3222 2344444332111 01389999999999963
No 84
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=6e-16 Score=122.23 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=76.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++...... ..+++..........++ ..+.+|||||..+....... ++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~ 94 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL-------SY 94 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGG-------GC
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHh-------hc
Confidence 468999999999999999999998764322 11222222222334455 47899999998766533321 11
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++++... +...+..++..+....+ ..|+++|+||+|+.
T Consensus 95 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 95 --PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLR 142 (207)
T ss_dssp --TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGG
T ss_pred --CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhh
Confidence 4799999998876432 33333556666666543 28999999999986
No 85
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.62 E-value=3e-15 Score=115.77 Aligned_cols=123 Identities=18% Similarity=0.272 Sum_probs=77.8
Q ss_pred HHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHH
Q 026593 28 SKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107 (236)
Q Consensus 28 ~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~ 107 (236)
+.+.......++|+++|++|+|||||++++++.......+ +.........+++..+.+|||||..... .
T Consensus 7 ~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~i~Dt~G~~~~~-------~ 75 (181)
T 1fzq_A 7 RKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKIR-------P 75 (181)
T ss_dssp HHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGGH-------H
T ss_pred HHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEECCEEEEEEECCCCHHHH-------H
Confidence 3343333467999999999999999999999886432222 1112233455678899999999975321 1
Q ss_pred HHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 108 LIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 108 ~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
....++ .++|++++|+++.... +... ..++..+..... ....|+++|+||+|+.
T Consensus 76 ~~~~~~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 76 YWRSYF--ENTDILIYVIDSADRKRFEET-GQELTELLEEEK-LSCVPVLIFANKQDLL 130 (181)
T ss_dssp HHHHHH--TTCSEEEEEEETTCGGGHHHH-HHHHHHHTTCGG-GTTCCEEEEEECTTST
T ss_pred HHHHHh--CCCCEEEEEEECcCHHHHHHH-HHHHHHHHhChh-hcCCCEEEEEECcCcc
Confidence 122222 5899999998875422 2222 223333322211 1238999999999996
No 86
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.62 E-value=9.1e-16 Score=135.94 Aligned_cols=116 Identities=22% Similarity=0.395 Sum_probs=86.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCC-CCCCCh-----HHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV-EAGYVN-----YQALELI 109 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~-d~~~~~-----~~~~~~i 109 (236)
..++|+++|.+|+|||||+|+|++.+...+.+.+++|.........+++..+.+|||||+. ++.... ......+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 4489999999999999999999998766677788777777767777789999999999997 554221 1223333
Q ss_pred HHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 110 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 110 ~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++... ..+..+..+++.+ . ..|+++|+||+|+.
T Consensus 322 ------~~aD~vl~VvD~s~-~~s~~~~~il~~l----~---~~piivV~NK~DL~ 363 (482)
T 1xzp_A 322 ------EKADIVLFVLDASS-PLDEEDRKILERI----K---NKRYLVVINKVDVV 363 (482)
T ss_dssp ------HHCSEEEEEEETTS-CCCHHHHHHHHHH----T---TSSEEEEEEECSSC
T ss_pred ------hcccEEEEEecCCC-CCCHHHHHHHHHh----c---CCCEEEEEECcccc
Confidence 37999999977643 2445555554333 2 27999999999996
No 87
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=1.9e-15 Score=117.88 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=78.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||++++++.... ....+++..........++ ..+.+|||||..+....... ++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------~~ 87 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL-------SY 87 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGG-------GC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHH-------hc
Confidence 4589999999999999999999977532 2222222223333344454 57899999998766533321 11
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++++... +......++..+.+..+ ..|+++|+||+|+.
T Consensus 88 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 135 (194)
T 2atx_A 88 --PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLR 135 (194)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTST
T ss_pred --CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence 4799999998875422 33333356667766543 38999999999996
No 88
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.9e-15 Score=120.74 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=75.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|+|++....... .+..+.........+++ ..+.+|||||..........+ +
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~-------~ 83 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS-KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY-------Y 83 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGG-------T
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHH-------h
Confidence 4589999999999999999999987643222 12222233333444555 478999999987655433221 1
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+
T Consensus 84 --~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 84 --RGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAH 132 (223)
T ss_dssp --TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred --ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 4899999997765422112223456666655332 379999999999964
No 89
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.62 E-value=1.7e-15 Score=117.67 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=76.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
++.++|+++|.+|+|||||+|++++...... .+ +.........+.+..+.+|||||+.+........ +
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~-------~- 87 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTT--VP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCY-------F- 87 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEE--CS--STTCCEEEEEETTEEEEEEEECCSSSSCCCCSSS-------S-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCc--CC--CCceEEEEEEECCEEEEEEECCCCHhHHHHHHHH-------h-
Confidence 4789999999999999999999987764322 22 1223334455678899999999987655432211 1
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++++... +... ..++..+..... ....|+++|+||+|+.
T Consensus 88 -~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 88 -SDTDAVIYVVDSTDRDRMGVA-KHELYALLDEDE-LRKSLLLIFANKQDLP 136 (189)
T ss_dssp -TTCCEEEEEEETTCCTTHHHH-HHHHHHHHTCST-TTTCEEEEEEECTTST
T ss_pred -hcCCEEEEEEeCCCHHHHHHH-HHHHHHHHhhhh-cCCCeEEEEEECCCCc
Confidence 4899999998875422 3222 223333322211 1238999999999996
No 90
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.62 E-value=3.1e-15 Score=116.24 Aligned_cols=119 Identities=12% Similarity=0.156 Sum_probs=75.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
..++.++|+++|.+|+|||||+|++++..... ...+ +...........+..+.+|||||..+.. .....+
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~ 87 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNE-DMIP--TVGFNMRKITKGNVTIKLWDIGGQPRFR-------SMWERY 87 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCC--CCSEEEEEEEETTEEEEEEEECCSHHHH-------TTHHHH
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCC-ccCC--CCceeEEEEEeCCEEEEEEECCCCHhHH-------HHHHHH
Confidence 34567999999999999999999999776431 1111 2222233445678899999999974322 112222
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+ .++|++++|+++.... +... ..++..+..... ....|+++|+||+|+.
T Consensus 88 ~--~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 88 C--RGVSAIVYMVDAADQEKIEAS-KNELHNLLDKPQ-LQGIPVLVLGNKRDLP 137 (188)
T ss_dssp H--TTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred H--ccCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCCEEEEEECCCCc
Confidence 2 5899999998875422 2221 233333332211 1238999999999996
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.62 E-value=1.8e-15 Score=116.89 Aligned_cols=118 Identities=8% Similarity=0.041 Sum_probs=75.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
...+.++|+++|.+|+|||||+|++++..........+. ......+++..+.+|||||+.+...... .+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~ 85 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGS----NVEEIVINNTRFLMWDIGGQESLRSSWN-------TY 85 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSS----SCEEEEETTEEEEEEEESSSGGGTCGGG-------GG
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCce----eeEEEEECCEEEEEEECCCCHhHHHHHH-------HH
Confidence 344679999999999999999999998875322222221 1233445788999999999865433221 12
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+ .++|++++|++++... +.. ...++..+..... ....|+++|+||+|+.
T Consensus 86 ~--~~~d~ii~v~D~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 86 Y--TNTEFVIVVVDSTDRERISV-TREELYKMLAHED-LRKAGLLIFANKQDVK 135 (181)
T ss_dssp G--TTCCEEEEEEETTCTTTHHH-HHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred h--ccCCEEEEEEECCCHHHHHH-HHHHHHHHHhChh-hCCCeEEEEEECCCcc
Confidence 2 5899999998875432 222 2233333333211 1238999999999996
No 92
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.62 E-value=2.2e-16 Score=139.28 Aligned_cols=121 Identities=21% Similarity=0.261 Sum_probs=78.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHH-h
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFL-L 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l-~ 114 (236)
..++|+++|.+|+|||||+|+|++.+...+...++.+.........+++..+.+|||||+.++....+... ++... .
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~g--i~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIG--VERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHH--HHHHhhh
Confidence 45899999999999999999999987666666777666665556667899999999999966432221110 11111 2
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
...+|++++|++... ..+..+..+++.+.. .|+++|+||+|+.+
T Consensus 301 ~~~aD~vl~VvD~s~-~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~ 344 (462)
T 3geh_A 301 ANTADLVLLTIDAAT-GWTTGDQEIYEQVKH-------RPLILVMNKIDLVE 344 (462)
T ss_dssp CCSCSEEEEEEETTT-CSCHHHHHHHHHHTT-------SCEEEEEECTTSSC
T ss_pred hhcCCEEEEEeccCC-CCCHHHHHHHHhccC-------CcEEEEEECCCCCc
Confidence 257999999977654 356655555555432 69999999999864
No 93
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.62 E-value=1e-15 Score=135.23 Aligned_cols=123 Identities=19% Similarity=0.238 Sum_probs=78.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCC-ChHHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY-VNYQALELIKGFL 113 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~-~~~~~~~~i~~~l 113 (236)
+...+|+++|.+|+|||||+|+|+|.....+...++.+.........+.+..+.+|||||+..... ...++......++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 345799999999999999999999988766777777887777888888889999999999874332 2333333333333
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++|+|++... .++..+..+.+.+.+ ...|+++|+||+|+.
T Consensus 101 --~~ad~il~VvD~~~-~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 101 --DEADVIIFMVNGRE-GVTAADEEVAKILYR-----TKKPVVLAVNKLDNT 144 (456)
T ss_dssp --HHCSEEEEEEESSS-CSCHHHHHHHHHHTT-----CCSCEEEEEECC---
T ss_pred --hhCCEEEEEEeCCC-CCChHHHHHHHHHHH-----cCCCEEEEEECccch
Confidence 47999999966432 477777777766654 238999999999986
No 94
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.62 E-value=7.9e-16 Score=118.71 Aligned_cols=117 Identities=18% Similarity=0.153 Sum_probs=77.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
+..++|+++|.+|+|||||++++++.... ....++...........++. .+.+|||||+.+....... +
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~ 73 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL-------S 73 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGG-------G
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHH-------h
Confidence 45789999999999999999999976532 12222222222333344554 5679999998654332211 1
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+|++++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 74 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 74 --YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 122 (186)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHH
T ss_pred --ccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccc
Confidence 15899999998875422 33332356666766543 38999999999986
No 95
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.62 E-value=7.9e-16 Score=120.73 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=71.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++....... .+............+++ ..+.+|||||..+.. ......+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~---- 98 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENI-SATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR---SIAKSYF---- 98 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTCH---HHHHHHH----
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccC-CCCccceeEEEEEEECCEEEEEEEEECCCCcchh---hhHHHHH----
Confidence 5699999999999999999999987642211 11111122223333444 468999999975432 1122222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++++..........++..+...... ..|+++|+||+|+.
T Consensus 99 --~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 99 --RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIR 146 (199)
T ss_dssp --HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred --hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccc
Confidence 3789999998875422111224456666654332 28999999999985
No 96
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.62 E-value=4e-15 Score=116.02 Aligned_cols=116 Identities=12% Similarity=0.170 Sum_probs=76.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.+.++|+++|++|+|||||++++++....... .+.........+++..+.+|||||+.+...... .++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~- 88 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK-------DYF- 88 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG-------GGC-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccc----cCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH-------HHH-
Confidence 35689999999999999999999987643221 122233455667889999999999866543221 111
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|+++.... +... ..++..+..... ....|+++|+||+|+.
T Consensus 89 -~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 89 -PEVNGIVFLVDAADPERFDEA-RVELDALFNIAE-LKDVPFVILGNKIDAP 137 (190)
T ss_dssp -TTCCEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred -hcCCEEEEEEECCChHHHHHH-HHHHHHHHcchh-hcCCCEEEEEECCCCc
Confidence 4889999998875422 3222 233444433211 1238999999999996
No 97
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=119.70 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=74.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++..... ...+..+.........+++ ..+.+|||||..+.. .....++
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~ 99 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR-------TITQSYY 99 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGGH-------HHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHH
Confidence 45899999999999999999999776422 1111112222333444555 489999999974321 1122223
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|+++.... +.. ...++..+...... ..|+++|+||+|+.+
T Consensus 100 --~~~d~iilv~D~~~~~s~~~-~~~~~~~i~~~~~~--~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 100 --RSANGAILAYDITKRSSFLS-VPHWIEDVRKYAGS--NIVQLLIGNKSDLSE 148 (201)
T ss_dssp --TTCSEEEEEEETTBHHHHHT-HHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred --hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC--CCCEEEEEECCcccc
Confidence 5899999998875421 222 23566666665432 389999999999964
No 98
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.62 E-value=5.8e-15 Score=114.28 Aligned_cols=121 Identities=17% Similarity=0.285 Sum_probs=81.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
++.++|+++|++|+|||||+|+|++... ..+..++.+.........+.+..+.+|||||+.+...... .......++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH-HHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH-HHHHHHHHHh
Confidence 4668999999999999999999998763 3444555555556666677889999999999977643221 1111122332
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...++++++|++.. ++ .....++..+.+ ...|+++|+||+|+.
T Consensus 83 ~~~~~~~i~v~d~~--~~-~~~~~~~~~~~~-----~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 83 NEKPDLVVNIVDAT--AL-ERNLYLTLQLME-----MGANLLLALNKMDLA 125 (188)
T ss_dssp HHCCSEEEEEEEGG--GH-HHHHHHHHHHHT-----TTCCEEEEEECHHHH
T ss_pred ccCCCEEEEEecch--hH-HHHHHHHHHHHh-----cCCCEEEEEEhhhcc
Confidence 23689999996643 22 222334444433 238999999999985
No 99
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.62 E-value=2.1e-15 Score=132.55 Aligned_cols=120 Identities=20% Similarity=0.315 Sum_probs=80.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh---------HHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN---------YQAL 106 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~---------~~~~ 106 (236)
..++|+++|++|+|||||+|+|+|.....+++.+++|.........++|..+.+|||||+....... ....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 3589999999999999999999999866677777777666666677889999999999985432211 1112
Q ss_pred HHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 107 ELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 107 ~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+ ..+|+++++++... ..+..+..+...+... ..|+++|+||+|+.+.
T Consensus 259 ~~i------~~ad~vllv~d~~~-~~~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 259 DSI------EKADVVVIVLDATQ-GITRQDQRMAGLMERR-----GRASVVVFNKWDLVVH 307 (439)
T ss_dssp HHH------HHCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTT
T ss_pred HHH------hhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCCCc
Confidence 222 36899999976643 3555555555444432 2899999999999643
No 100
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.61 E-value=9.9e-16 Score=120.42 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=76.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||++++++...... ..++...........++ ..+.+|||||..+....... +
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~- 93 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPL-------S- 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGG-------G-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHH-------h-
Confidence 458999999999999999999998764221 11111111122234454 37899999998654432221 1
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+|++++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 94 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 142 (201)
T 2gco_A 94 -YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR 142 (201)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGT
T ss_pred -cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhh
Confidence 15899999998876432 33333456666666543 38999999999996
No 101
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=1e-15 Score=134.37 Aligned_cols=122 Identities=19% Similarity=0.228 Sum_probs=74.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCC-hHHHHHHHHHHHhc
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLLN 115 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~-~~~~~~~i~~~l~~ 115 (236)
..+|+++|.+|+|||||+|+|++.....+.+.++.|.........+.+..+.+|||||+...... ..........++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~-- 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM-- 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH--
Confidence 36899999999999999999999887667777777777777788888899999999999633221 122222222233
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++... ..+..+..+.+.+.+ ...|+++|+||+|+.+
T Consensus 81 ~~ad~il~vvD~~~-~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 81 DEADVIIFMVNGRE-GVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HHCSEEEEEEETTT-CSCHHHHHHHHHHTT-----CCSCEEEEEECCCC--
T ss_pred HhCCEEEEEEeCCC-CCCHHHHHHHHHHHH-----cCCCEEEEEECccCcc
Confidence 47999999977643 366666665555542 2389999999999863
No 102
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.61 E-value=2.6e-15 Score=117.88 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=75.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|.+|+|||||+|+|++...... ..+..+...........+ ..+.+|||||+.+. ......++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~- 78 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYY- 78 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSC-CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTG-
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhh-
Confidence 48999999999999999999998874321 112222222222333343 47899999998432 11122222
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPD 168 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 168 (236)
..+|++++|+++...........++..+...... ..|+++|+||+|+.+..
T Consensus 79 -~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 79 -RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDER 129 (203)
T ss_dssp -GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS--SCEEEEEEECTTCTTSC
T ss_pred -cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCccc
Confidence 4789999998875422111223455666554322 38999999999996433
No 103
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.61 E-value=3.7e-15 Score=114.80 Aligned_cols=116 Identities=14% Similarity=0.102 Sum_probs=73.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.+.++|+++|++|+|||||+|++++.......+. .........+++..+.+|||||+.+....... ++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t----~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~- 83 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPT----IGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC-------YY- 83 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSS----TTCCEEEEEETTEEEEEEEEC----CCTTGGG-------TT-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCc----CccceEEEEECCEEEEEEECCCCHhHHHHHHH-------Hh-
Confidence 4689999999999999999999998765222221 11223344567889999999999765433221 11
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|+++.... +.. ...++..+..... ....|+++|+||+|+.
T Consensus 84 -~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 84 -ADTAAVIFVVDSTDKDRMST-ASKELHLMLQEEE-LQDAALLVFANKQDQP 132 (183)
T ss_dssp -TTEEEEEEEEETTCTTTHHH-HHHHHHHHTTSST-TSSCEEEEEEECTTST
T ss_pred -ccCCEEEEEEECCCHHHHHH-HHHHHHHHHcChh-hCCCeEEEEEECCCCC
Confidence 4899999998875422 222 1233333332211 2348999999999996
No 104
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.61 E-value=5.5e-15 Score=115.83 Aligned_cols=126 Identities=16% Similarity=0.087 Sum_probs=78.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++..... ...+..+.........+++. .+.+|||||...... .... .++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---~~~~---~~~ 94 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG---WLRD---HCL 94 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH---HHHH---HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCccchh---hhHH---Hhh
Confidence 56899999999999999999998754322 22233333333444445554 678899999854321 1111 112
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCch
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLNY 172 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~ 172 (236)
.++|++++|++++... +.. -..++..+...... ...|+++|+||+|+.+.+..+.
T Consensus 95 --~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~ 150 (195)
T 3cbq_A 95 --QTGDAFLIVFSVTDRRSFSK-VPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSL 150 (195)
T ss_dssp --HHCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCH
T ss_pred --ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCH
Confidence 3689999998886422 222 23455555554321 2389999999999964433333
No 105
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.61 E-value=2.7e-15 Score=113.45 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKT 117 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~ 117 (236)
++|+++|.+|+|||||+|++++..... ..+. .........+.+..+.+|||||+.+. ......++ .+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~t--~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~ 67 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPT--IGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYF--QN 67 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--CCCC--SSCCEEEEECSSCEEEEEECCCCGGG-------HHHHHHHT--TT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc--ccCc--CceeEEEEEECCEEEEEEEcCCChhh-------HHHHHHHh--cc
Confidence 589999999999999999999766432 1221 12223344557789999999998532 11122222 58
Q ss_pred CcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 118 IDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 118 ~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+|++++|++++... +... ..++..+.... .....|+++|+||+|+.
T Consensus 68 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~-~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 68 TQGLIFVVDSNDRERVNEA-REELMRMLAED-ELRDAVLLVFANKQDLP 114 (164)
T ss_dssp CSEEEEEEETTCGGGHHHH-HHHHHHHHTCG-GGTTCEEEEEEECTTST
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHhch-hhcCCeEEEEEECcCCc
Confidence 99999998875422 2222 23333333221 11238999999999996
No 106
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.61 E-value=5.2e-15 Score=116.20 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=71.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.+.++|+++|++|+|||||++++++.......+. .........+++..+.+|||||+........ .++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t----~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~- 90 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT----LHPTSEELTIAGMTFTTFDLGGHIQARRVWK-------NYL- 90 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CC----CCCSCEEEEETTEEEEEEEECC----CCGGG-------GGG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCC----CCceeEEEEECCEEEEEEECCCcHhhHHHHH-------HHH-
Confidence 4678999999999999999999998764322211 1112244556788999999999866543222 112
Q ss_pred cCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|+++.... +... ..++..+.+... ....|+++|+||+|+.
T Consensus 91 -~~~d~~i~v~D~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 91 -PAINGIVFLVDCADHERLLES-KEELDSLMTDET-IANVPILILGNKIDRP 139 (198)
T ss_dssp -GGCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGG-GTTSCEEEEEECTTST
T ss_pred -hcCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCcEEEEEECCCcc
Confidence 3789999998875422 3222 233444433211 1238999999999995
No 107
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.60 E-value=3.1e-15 Score=114.55 Aligned_cols=120 Identities=19% Similarity=0.185 Sum_probs=75.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++..... ...+..+.........+++ ..+.+|||||.... ......++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~ 77 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFY 77 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHH
Confidence 46899999999999999999999776421 1122222222233444555 37899999997432 11122222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCc--cccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++++..........++..+...... ....|+++|+||+|+.
T Consensus 78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 78 --RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred --hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 5899999998876432111124566666655431 1337999999999986
No 108
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.60 E-value=1.1e-15 Score=118.40 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=74.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++..... ...++...........++ ..+.+|||||..+....... +
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~- 75 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPL-------S- 75 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGG-------G-
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHh-------h-
Confidence 56899999999999999999999876421 111111112222233333 47899999998654332211 1
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..++|++++|++++... +......|+..+....+ ..|+++|+||+|+.
T Consensus 76 -~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 76 -YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 124 (184)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred -cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhh
Confidence 15899999998875421 22222345666665543 38999999999986
No 109
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.60 E-value=1.3e-15 Score=121.40 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=78.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCc-cccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERV-VTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
....++|+++|.+|+|||||+|+++.... .......+.+...........+..+.+|||||...........+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~------ 85 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY------ 85 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHH------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHH------
Confidence 34669999999999999999999664332 12222222232333333333445789999999866554443222
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++|++++|++++.......-..++..+..... ..|+++|+||+|+.+
T Consensus 86 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 86 ---IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD 133 (221)
T ss_dssp ---TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred ---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence 489999999887642211122456666666543 389999999999963
No 110
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.60 E-value=1.7e-14 Score=114.19 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=71.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC---CeeEEEEeCCCCCCCCCChHHHHH-HHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALE-LIKG 111 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~liDTPG~~d~~~~~~~~~~-~i~~ 111 (236)
..++|+++|.+|+|||||++++++.... ...++.+.. .....++ +..+.+|||||+.+ ... ....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~ 74 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDS--SAIYKVNNNRGNSLTLIDLPGHES-------LRFQLLDR 74 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCE--EEEEECSSTTCCEEEEEECCCCHH-------HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCccee--eEEEEecCCCccEEEEEECCCChh-------HHHHHHHH
Confidence 5689999999999999999999977632 222222222 2224444 56899999999842 222 1222
Q ss_pred HHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHh----hCccccCcEEEEEeCCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGT----FGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~----~~~~~~~~~ivv~tk~D~~~ 166 (236)
++ .++|++++|+++.. +..........+... .......|+++|+||+|+.+
T Consensus 75 ~~--~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 75 FK--SSARAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp HG--GGEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred HH--hhCCEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 22 57999999977653 222122233333222 11223489999999999963
No 111
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.60 E-value=1.4e-15 Score=120.86 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=76.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC--CeeEEEEeCCCCCCCCCChHHHHHHHH
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG--GFTLNIIDTPGLVEAGYVNYQALELIK 110 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDTPG~~d~~~~~~~~~~~i~ 110 (236)
.....++|+++|.+|+|||||++++++..... ...++...........+ ...+.+|||||..........
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~------ 94 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPL------ 94 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGG------
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCC--CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHH------
Confidence 34467999999999999999999999876422 22222222222222233 357899999998654433221
Q ss_pred HHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 111 GFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 111 ~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++ .++|++++|++++... +......|+..+..... ..|+++|+||+|+.
T Consensus 95 -~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 95 -CY--SDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLR 144 (214)
T ss_dssp -GC--TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGG
T ss_pred -Hc--CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence 11 4899999998876422 22223567777776643 38999999999996
No 112
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.60 E-value=1.1e-15 Score=120.65 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=75.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
.+.++|+++|.+|+|||||++++++.... ....+.+..........++. .+.+|||||+.+....... +
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~ 98 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPL-------S 98 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGG-------G
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHH-------H
Confidence 46799999999999999999999976532 22222333333333444554 4569999998654432221 1
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..++|++++|++++... +......++..+..... ..|+++|+||+|+.
T Consensus 99 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 99 --YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 147 (204)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECHHHH
T ss_pred --hccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhc
Confidence 15899999998876422 33322356666666542 38999999999986
No 113
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.60 E-value=2.1e-15 Score=115.75 Aligned_cols=120 Identities=12% Similarity=0.067 Sum_probs=71.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC---CeeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG---GFTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
..++|+++|.+|+|||||+|++++...... ..+..+.........+. ...+.+|||||..+.... ...+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~ 78 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQ-YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL-------GVAF 78 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTT-C---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhh-------hHHH
Confidence 679999999999999999999998764221 12222223333444443 357899999997543211 1111
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhC--ccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~ 165 (236)
+ ..+|++++|++++..........++..+..... .....|+++|+||+|+.
T Consensus 79 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 79 Y--RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp S--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred h--hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 2 579999999877542211222455666655543 11337999999999985
No 114
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.60 E-value=7.6e-15 Score=121.11 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=82.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNK 116 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~ 116 (236)
.++|+++|.+|+|||||+|+|+|... .++.+++.+.......... +..+.+|||||+........ .....+.++...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~-~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSP-EAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSH-HHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCCh-HHHHHHHHHhcC
Confidence 57999999999999999999999863 4566676666666666555 77899999999987653221 111223444445
Q ss_pred CCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 117 TIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 117 ~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+|++++|++.. .. .....+...+.+. ..|+++|+||+|+.
T Consensus 80 ~~d~vi~V~D~t--~~-e~~~~~~~~l~~~-----~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 80 RADSILNVVDAT--NL-ERNLYLTTQLIET-----GIPVTIALNMIDVL 120 (272)
T ss_dssp CCSEEEEEEEGG--GH-HHHHHHHHHHHHT-----CSCEEEEEECHHHH
T ss_pred CCCEEEEEecCC--ch-HhHHHHHHHHHhc-----CCCEEEEEEChhhC
Confidence 799999996654 22 1223444444442 38999999999985
No 115
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.60 E-value=5.4e-15 Score=116.23 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=76.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|+|++...... ..+..+..........++ ..+.+|||||..+....... ++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~ 78 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVA-------FY 78 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSS-CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCG-------GG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHH-------HH
Confidence 668999999999999999999998764321 122222223333333444 47899999997654432211 11
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCc--cccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK--QIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|+++.... +.. -..++..+...... ....|+++|+||+|+.
T Consensus 79 --~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 79 --RGADCCVLVFDVTAPNTFKT-LDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp --TTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred --hCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 4899999998775422 221 23455555555431 1238999999999996
No 116
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.60 E-value=8.6e-15 Score=112.33 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=74.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
++.++|+++|.+|+|||||++++++..... ..++...........++. .+.+|||||... ...+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~--- 70 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD--------AKFS--- 70 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC--------HHHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch--------hHHH---
Confidence 467999999999999999999999876532 112222223334444553 678999999854 1222
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCc-cccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +.. -..++.++...... ....|+++|+||+|+.
T Consensus 71 ---~~~d~~ilv~D~~~~~s~~~-~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 71 ---GWADAVIFVFSLEDENSFQA-VSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ---HHCSEEEEEEETTCHHHHHH-HHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ---HhCCEEEEEEECcCHHHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2689999998876422 222 23344455554331 1237999999999984
No 117
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.60 E-value=8.3e-15 Score=113.55 Aligned_cols=120 Identities=17% Similarity=0.111 Sum_probs=74.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceE-EEEeeeC-----------CeeEEEEeCCCCCCCCCChH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV-MVSRSKG-----------GFTLNIIDTPGLVEAGYVNY 103 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~liDTPG~~d~~~~~~ 103 (236)
..++|+++|.+|+|||||+|++++..... ...+....... ....... ...+.+|||||+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----- 83 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF----- 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-----
Confidence 45899999999999999999999766422 11111111111 2222333 348999999998432
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 104 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 104 ~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
......++ ..+|++++|+++........-..++..+...... ...|+++|+||+|+.+
T Consensus 84 --~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 84 --RSLTTAFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLED 141 (195)
T ss_dssp --HHHHHHTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGG
T ss_pred --HHHHHHHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 11222222 5899999998775422111124556666554421 2389999999999964
No 118
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=2.4e-15 Score=116.98 Aligned_cols=119 Identities=17% Similarity=0.080 Sum_probs=74.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
+.++|+++|.+|+|||||+|+|++...... ..+..+.........+.+ ..+.+|||||..+........ +
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~---- 85 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPE-LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY---Y---- 85 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHH---H----
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHH---h----
Confidence 568999999999999999999998764221 122222222223333343 578999999986554433221 2
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|+++...........++..+..... ....|+++|+||+|+.
T Consensus 86 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 86 --RGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKE 134 (195)
T ss_dssp --TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSS
T ss_pred --ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCc
Confidence 489999999877542111112344444444322 1238999999999994
No 119
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.59 E-value=2.4e-15 Score=118.93 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=77.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||++++++.... ....++...........++ ..+.+|||||+......... ++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~ 78 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPL-------SY 78 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CG-------GG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHh-------hc
Confidence 5689999999999999999999976632 2222222222233333444 48899999999766533221 11
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +......|+..+....+ ..|+++|+||+|+.
T Consensus 79 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 79 --RGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLR 126 (212)
T ss_dssp --TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhh
Confidence 5899999998875422 32222356666666543 38999999999986
No 120
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.59 E-value=1.7e-15 Score=119.80 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=75.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
...++|+++|.+|+|||||+|++++..... ...++...........++ ..+.+|||||.......... +
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~ 96 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPL-------S 96 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGG-------G
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHh-------h
Confidence 356999999999999999999999876421 111111112222233333 57899999998654332211 1
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..++|++++|++++... +......|+..+..... ..|+++|+||+|+.
T Consensus 97 --~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 97 --YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 145 (205)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred --ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhc
Confidence 15899999998875421 22222456666665543 38999999999986
No 121
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=3.8e-15 Score=115.98 Aligned_cols=121 Identities=13% Similarity=0.113 Sum_probs=76.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccc-cCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVN-SFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
..++|+++|.+|+|||||+|++++....... ...+.+...........+..+.+|||||.... ......++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~- 93 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY-------RTITTAYY- 93 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC-------HHHHHHHH-
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH-------HHHHHHHH-
Confidence 4589999999999999999999976532211 11111222222333345568999999995322 12222233
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++....-.....++..+...... ..|+++|+||+|+.+.
T Consensus 94 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 94 -RGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDMEEE 143 (191)
T ss_dssp -TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred -ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc
Confidence 5899999998876422112224566666665433 3899999999998633
No 122
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=123.00 Aligned_cols=115 Identities=11% Similarity=0.142 Sum_probs=73.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
+.++|+++|.+|+|||||+++|++...... .+ |...........+..+.||||||........... +
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~---~------ 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY---F------ 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-----CCSHHHH---H------
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc--cc--ccceEEEEEecCcEEEEEEECCCCHhHHHHHHHH---h------
Confidence 346999999999999999999998874322 22 3334445566788899999999976655443222 2
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+|++++|++++... +......+...+.... ....|+++|+||+|+.
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~--~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDE--LRDAVLLVFANKQDLP 279 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTST
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc--cCCCeEEEEEECccCC
Confidence 4899999998885422 3333223333322221 1238999999999996
No 123
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=2.6e-15 Score=118.37 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=76.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++..... ...+..+.........+++. .+.+|||||.... ......++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~ 96 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSYY 96 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGGS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHH
Confidence 45899999999999999999999776422 22222222333334455554 7899999997432 11122222
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++.......-..++..+...... ..|+++|+||+|+.+
T Consensus 97 --~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 97 --RSANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDLAE 145 (201)
T ss_dssp --TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcc
Confidence 5899999998875422111124566666655432 378999999999963
No 124
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.59 E-value=4.3e-14 Score=120.98 Aligned_cols=125 Identities=19% Similarity=0.258 Sum_probs=85.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh-HHH-HHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN-YQA-LELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~-~~~-~~~i~~~ 112 (236)
...++|+++|.+|+|||||+|+|++... .+...+..+...........+..+.+|||||+.+..... ... ...+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~- 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA- 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH-
Confidence 3568999999999999999999999873 344445555555555556678889999999997654221 111 111211
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChH-HHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
....+|++++|++++... ++.. ...++..+...++ ..|+++|+||+|+.
T Consensus 243 -~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~ 293 (357)
T 2e87_A 243 -LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVA 293 (357)
T ss_dssp -GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTC
T ss_pred -HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccC
Confidence 124689999997754322 3333 3567777777654 38999999999986
No 125
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.58 E-value=3.2e-15 Score=117.44 Aligned_cols=122 Identities=14% Similarity=0.140 Sum_probs=53.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCccc-ceEEEEeeeC----CeeEEEEeCCCCCCCCCChHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEAL-RPVMVSRSKG----GFTLNIIDTPGLVEAGYVNYQALELIK 110 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~liDTPG~~d~~~~~~~~~~~i~ 110 (236)
..++|+++|.+|+|||||+|++++..........+++. ........+. ...+.+|||||+.+ ......
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~ 91 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL-------YKEQIS 91 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHH-------HHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH-------HHHHHH
Confidence 45899999999999999999999883222222222221 2233334445 35799999999832 222222
Q ss_pred HHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCc-cccCcEEEEEeCCCCCC
Q 026593 111 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGK-QIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 111 ~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~ 166 (236)
.++ .++|++++|++++..........++..+....+. ....|+++|+||+|+.+
T Consensus 92 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 92 QYW--NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp TTC--CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHH--hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 222 5799999998875422112224566666665430 12389999999999964
No 126
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.58 E-value=1.9e-14 Score=120.73 Aligned_cols=126 Identities=18% Similarity=0.251 Sum_probs=73.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccc-----ccCcCcccceE---------------------------------
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTV-----NSFQSEALRPV--------------------------------- 76 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~-----~~~~~~~~~~~--------------------------------- 76 (236)
....+|+++|.+|+|||||+|+|+|..+... ...+.......
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3457999999999999999999999875221 11110000000
Q ss_pred --------------------EE-EeeeCCeeEEEEeCCCCCCCC------CChHHHHHHHHHHHhcCCCcEEEEEEeCCC
Q 026593 77 --------------------MV-SRSKGGFTLNIIDTPGLVEAG------YVNYQALELIKGFLLNKTIDVLLYADRLDA 129 (236)
Q Consensus 77 --------------------~~-~~~~~~~~~~liDTPG~~d~~------~~~~~~~~~i~~~l~~~~~~~il~v~~~d~ 129 (236)
.. .....+..+.+|||||+.+.. ............++ ..+|++++|++...
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEESS
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEecC
Confidence 00 011134579999999996522 12223333333444 48899999966522
Q ss_pred CCCChHH-HHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 130 YRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 130 ~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+...+ ..+++.+.. ...|+++|+||+|+.+.
T Consensus 180 ~~~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 180 TDLANSDALQLAKEVDP-----EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp SCSTTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCS
T ss_pred cchhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCc
Confidence 2333222 344444432 23899999999999743
No 127
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.58 E-value=5.2e-16 Score=121.74 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=74.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|+|++...... ..+..+.........+++ ..+.+|||||...........+
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~------- 103 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTES-YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY------- 103 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCH-HHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC---------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHh-------
Confidence 458999999999999999999998764322 122223333444445565 4789999999876654332211
Q ss_pred hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++++..........++..+...... ..|+++|+||+|+.+.
T Consensus 104 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 104 --RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK 153 (199)
T ss_dssp --CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--
T ss_pred --hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc
Confidence 4899999996665321111123455555443322 3899999999999643
No 128
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.58 E-value=9.7e-16 Score=117.90 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=70.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
+..++|+++|.+|+|||||++++++..... ...++...........++ ..+.+|||||.......... +
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~ 76 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPL-------S 76 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTTTTTGGG-------G
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHh-------h
Confidence 357999999999999999999999765321 111111111111122233 35679999998765433321 1
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+ .++|++++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 77 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 77 Y--RGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLR 125 (182)
T ss_dssp G--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred c--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhh
Confidence 1 4799999998875422 32222346666666543 38999999999985
No 129
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.57 E-value=3.7e-15 Score=124.77 Aligned_cols=120 Identities=15% Similarity=0.232 Sum_probs=82.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCC-CCCCChHHHHHHHHHHH-
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLV-EAGYVNYQALELIKGFL- 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~-d~~~~~~~~~~~i~~~l- 113 (236)
+..+|+++|++|+|||||+|+|+|..+..++..+..+..........++..+.+|||||+. ... ....+.+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~---~~l~~~~~~~~~ 83 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK---RAINRLMNKAAS 83 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH---HHHHHHHTCCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch---hhHHHHHHHHHH
Confidence 3458999999999999999999999876666555555555555556678899999999985 111 11111111111
Q ss_pred -hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 114 -LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 -~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
....+|++++|++... ++..+..+.+.+.. ...|+++|+||+|+.
T Consensus 84 ~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR--WTPDDEMVLNKLRE-----GKAPVILAVNKVDNV 129 (301)
T ss_dssp SCCCCEEEEEEEEETTC--CCHHHHHHHHHHHS-----SSSCEEEEEESTTTC
T ss_pred HHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHh-----cCCCEEEEEECcccC
Confidence 1257899999977643 77776655555442 228999999999985
No 130
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=4.3e-14 Score=112.13 Aligned_cols=122 Identities=15% Similarity=0.221 Sum_probs=74.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
...++|+++|++|+|||||+++|++........ ...+ .....+.+..+.+|||||+..... .....++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~----~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~- 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV----SQEP-LSAADYDGSGVTLVDFPGHVKLRY---KLSDYLKTRA- 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC----CSSC-EEETTGGGSSCEEEECCCCGGGTH---HHHHHHHHHG-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeee----ecCc-eEEEEeeCceEEEEECCCcHHHHH---HHHHHHHhcc-
Confidence 366899999999999999999999876422100 0011 111223566899999999965432 2222222111
Q ss_pred cCCCcEEEEEEeCC-C-CCCChHHHHHHHHHHHhhC--ccccCcEEEEEeCCCCCCC
Q 026593 115 NKTIDVLLYADRLD-A-YRVDDLDRQIIKAVTGTFG--KQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 115 ~~~~~~il~v~~~d-~-~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|+++||++.. . .++... ..++..+..... .....|+++|+||+|+.+.
T Consensus 81 -~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 81 -KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp -GGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred -ccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 2479999998876 2 234433 344444443321 1123899999999999743
No 131
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.55 E-value=2.4e-14 Score=111.09 Aligned_cols=114 Identities=16% Similarity=0.052 Sum_probs=75.2
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHH
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIK 110 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~ 110 (236)
..++.++|+++|.+|+|||||+|++++....... .+ +.........+++. .+.+|||||..... .+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~-~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~- 83 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SP--EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------FA- 83 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC-CT--TCEEEEEEEEETTEEEEEEEEECSSSCCHH--------HH-
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CC--CcceEEEEEEECCEEEEEEEEECCCChhhh--------ee-
Confidence 3456799999999999999999999987643211 11 12222344455664 56779999985432 22
Q ss_pred HHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 111 GFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 111 ~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++++|++++... +.. -..|+..+..... ....|+++|+||+|+.
T Consensus 84 -----~~~~~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 84 -----AWVDAVVFVFSLEDEISFQT-VYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp -----HHCSEEEEEEETTCHHHHHH-HHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred -----cCCCEEEEEEECcCHHHHHH-HHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 2689999998876422 221 1345555554432 1238999999999985
No 132
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.55 E-value=1.5e-14 Score=133.69 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=76.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEE-------Eee--------------------eCC----
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV-------SRS--------------------KGG---- 84 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~-------~~~--------------------~~~---- 84 (236)
..++|+++|.+|+|||||+|+|+|.++..++..+++...+... +.. ..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 7799999999999999999999999876655544332111100 000 000
Q ss_pred --------------------------eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHH
Q 026593 85 --------------------------FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQ 138 (236)
Q Consensus 85 --------------------------~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~ 138 (236)
..+.+|||||+.+.......+...+ ..+|+++||++.+. .++..+..
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i------~~aD~vL~Vvda~~-~~s~~e~~ 220 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYV------NNCHAILFVMRASQ-PCTLGERR 220 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHH------HSSSEEEEEEETTS-TTCHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHH------HhCCEEEEEEeCCC-ccchhHHH
Confidence 3689999999865432222222333 47999999977643 35666655
Q ss_pred HHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 139 IIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 139 ~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
++...... ...|+++|+||+|+.+
T Consensus 221 ~l~~~l~~----~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 221 YLENYIKG----RGLTVFFLVNAWDQVR 244 (695)
T ss_dssp HHHHHTTT----SCCCEEEEEECGGGGG
T ss_pred HHHHHHHh----hCCCEEEEEECccccc
Confidence 44322111 1268999999999863
No 133
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.54 E-value=4.7e-14 Score=110.18 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=72.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCC-CCChHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEA-GYVNYQALELIKGF 112 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~-~~~~~~~~~~i~~~ 112 (236)
..++|+++|.+|+|||||+|++++......+..++.+.........+++. .+.+|||+|.... ......+ +
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~---~--- 78 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHC---M--- 78 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGH---H---
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhh---c---
Confidence 56899999999999999999999754323333333233333344455665 5678999997542 1221111 1
Q ss_pred HhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++++... +.. ...+...+...... ...|+++|+||+|+.+
T Consensus 79 ---~~~~~~i~v~dv~~~~s~~~-~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 79 ---QVGDAYLIVYSITDRASFEK-ASELRIQLRRARQT-EDIPIILVGNKSDLVR 128 (192)
T ss_dssp ---HHCSEEEEEEETTCHHHHHH-HHHHHHHHHHHTTT-SCCCEEEEEECTTCGG
T ss_pred ---ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhhCC-CCCeEEEEEechhhhc
Confidence 2579999998886422 322 23444555543221 2379999999999863
No 134
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.54 E-value=2.1e-14 Score=120.96 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=81.3
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCee--EEEEeCCCCCCCCCChH
Q 026593 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT--LNIIDTPGLVEAGYVNY 103 (236)
Q Consensus 26 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~liDTPG~~d~~~~~~ 103 (236)
..+.+.......++|+++|.+|+|||||++++++.... ....+++..........++.. +.+|||||.........
T Consensus 144 ~~~~~~~~~~~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 221 (332)
T 2wkq_A 144 TAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP 221 (332)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGG
T ss_pred hcccchhcccceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHH
Confidence 33334444557799999999999999999999976532 222233333333344556654 55999999865543222
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 104 QALELIKGFLLNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 104 ~~~~~i~~~l~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
. + ...+|++++|++++... +......++..+....+ ..|+++|+||+|+.
T Consensus 222 ~-------~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 222 L-------S--YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLR 272 (332)
T ss_dssp G-------G--CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHH
T ss_pred H-------h--ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcc
Confidence 1 1 14899999998875421 22222246666666543 38999999999985
No 135
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=9e-14 Score=110.49 Aligned_cols=121 Identities=14% Similarity=0.071 Sum_probs=74.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFL 113 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l 113 (236)
..++|+++|.+|+|||||+|++++.........++.+.........+++. .+.+|||+|.... .+.+.. .
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~-------~~~l~~-~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-------NEWLHD-H 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-------HHHHHH-C
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch-------hhhHHH-H
Confidence 55899999999999999999999865433333333333333344455665 4678999986421 111221 1
Q ss_pred hcCCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 114 LNKTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 114 ~~~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
....++++++|++++... +... ..+...+.+... ....|+++|+||+|+.+
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~-~~~~~~l~~~~~-~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQ-TEDIPIILVGNKSDLVR 159 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHH-HHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred HHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhC-CCCCcEEEEEEChHHhc
Confidence 225789999998886522 3222 234444443221 12389999999999963
No 136
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.54 E-value=1.6e-14 Score=114.52 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=70.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeC------------CeeEEEEeCCCCCCCCCChH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKG------------GFTLNIIDTPGLVEAGYVNY 103 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~liDTPG~~d~~~~~~ 103 (236)
..++|+++|.+|+|||||+|+|++..... ...+..+.........+. ...+.+|||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------- 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------- 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-------
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-------
Confidence 45899999999999999999999876421 111111111111222222 4579999999952
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCcc--ccCcEEEEEeCCCCCC
Q 026593 104 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ--IWRKSLLVLTHAQLCP 166 (236)
Q Consensus 104 ~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~ 166 (236)
........++ ..+|++++|++++... .......++....... ...|+++|+||+|+.+
T Consensus 96 ~~~~~~~~~~--~~~d~iilV~D~~~~~---s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 96 RFRSLTTAFF--RDAMGFLLMFDLTSQQ---SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp HHHHHHHHHH--TTCCEEEEEEETTCHH---HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred hHHhHHHHHh--cCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 2222223333 5899999998775321 1112222333222211 3489999999999964
No 137
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.53 E-value=3.2e-13 Score=112.33 Aligned_cols=124 Identities=19% Similarity=0.327 Sum_probs=71.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc-----cccCcC----------------------cccc--------------
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT-----VNSFQS----------------------EALR-------------- 74 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~-----~~~~~~----------------------~~~~-------------- 74 (236)
..++|+++|.+|+|||||+|+|+|.+... +...+. .+..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999987531 111121 0000
Q ss_pred ---------eEEEEee-eCCeeEEEEeCCCCCCCCC---Ch---HHHHHHHHHHHhcCCCcEEE-EEEeCCCCCCChHHH
Q 026593 75 ---------PVMVSRS-KGGFTLNIIDTPGLVEAGY---VN---YQALELIKGFLLNKTIDVLL-YADRLDAYRVDDLDR 137 (236)
Q Consensus 75 ---------~~~~~~~-~~~~~~~liDTPG~~d~~~---~~---~~~~~~i~~~l~~~~~~~il-~v~~~d~~~~~~~~~ 137 (236)
....... .....+.+|||||+.+... .. ......+..++ ..++.++ +|++... .++..+.
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~v~d~~~-~~~~~~~ 181 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV--TKENCLILAVSPANS-DLANSDA 181 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH--TSTTEEEEEEEESSS-CGGGCHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHH--cCCCeEEEEEecCCc-chhhhHH
Confidence 0000001 1136899999999975321 11 12333334444 3556554 6766543 2443332
Q ss_pred -HHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 138 -QIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 138 -~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
.+++.+.. ...|+++|+||+|+.+.
T Consensus 182 ~~~~~~~~~-----~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 182 LKIAKEVDP-----QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHHCT-----TCSSEEEEEECGGGSCT
T ss_pred HHHHHHhCC-----CCCeEEEEEEccccCCC
Confidence 33333322 23899999999999743
No 138
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.53 E-value=1.3e-13 Score=106.68 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=71.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCCh----HHHHHHHHHHH
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGFL 113 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~----~~~~~~i~~~l 113 (236)
++|+++|.+|+|||||+|++++... ..+..++.+........ . .+.+|||||+.+..... +........++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999998874 33334444444433332 2 78999999986654332 22222222333
Q ss_pred h--cCCCcEEEEEEeCCCCCCChHHHHHHHH--------HHHhhCccccCcEEEEEeCCCCC
Q 026593 114 L--NKTIDVLLYADRLDAYRVDDLDRQIIKA--------VTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 114 ~--~~~~~~il~v~~~d~~~~~~~~~~~l~~--------l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
. ...++++++|.+.+ ++......+... +..... ....|+++|+||+|+.
T Consensus 77 ~~~~~~~~~v~~v~d~~--s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 135 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGK--AAPEIIKRWEKRGEIPIDVEFYQFLR-ELDIPTIVAVNKLDKI 135 (190)
T ss_dssp HHHGGGCCEEEEEEETT--HHHHHHHHHHHTTCCCHHHHHHHHHH-HTTCCEEEEEECGGGC
T ss_pred HhhhccCCEEEEEEcch--hhhhHHHhhhccCccHHHHHHHHHHH-hcCCceEEEeehHhcc
Confidence 2 34677888885432 332221222211 111111 1238999999999996
No 139
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.53 E-value=7.1e-14 Score=125.82 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=75.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcc--ccccCcCcccceEEEEe----------------------------------
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVV--TVNSFQSEALRPVMVSR---------------------------------- 80 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~--~~~~~~~~~~~~~~~~~---------------------------------- 80 (236)
.++|+|+|.+|+|||||+|+|+|.++. .++..+.++........
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 479999999999999999999998864 23333332211111000
Q ss_pred --eeCC---eeEEEEeCCCCCCCCCCh-HH---HHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccc
Q 026593 81 --SKGG---FTLNIIDTPGLVEAGYVN-YQ---ALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQI 151 (236)
Q Consensus 81 --~~~~---~~~~liDTPG~~d~~~~~-~~---~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~ 151 (236)
.+.+ ..+.||||||+.+..... .+ .......++ ..+|++++|++.........+..+++.+...
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----- 217 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRGH----- 217 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-----
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-----
Confidence 0001 368999999997632110 00 112222223 3789999997765433566666666665432
Q ss_pred cCcEEEEEeCCCCC
Q 026593 152 WRKSLLVLTHAQLC 165 (236)
Q Consensus 152 ~~~~ivv~tk~D~~ 165 (236)
..|+++|+||+|+.
T Consensus 218 ~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 218 EDKIRVVLNKADMV 231 (550)
T ss_dssp GGGEEEEEECGGGS
T ss_pred CCCEEEEEECCCcc
Confidence 27899999999996
No 140
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.52 E-value=2.9e-14 Score=110.86 Aligned_cols=120 Identities=11% Similarity=0.034 Sum_probs=70.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCc-------CcccceEEEEe---ee--CCeeEEEEeCCCCCCCCCChH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ-------SEALRPVMVSR---SK--GGFTLNIIDTPGLVEAGYVNY 103 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~-------~~~~~~~~~~~---~~--~~~~~~liDTPG~~d~~~~~~ 103 (236)
..++|+++|.+|+|||||++.+.+.......... ..+........ .. ....+.+|||||..+.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~- 91 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR- 91 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHH-
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHH-
Confidence 4589999999999999999988876432211100 00100011110 11 23468999999986543211
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHH----HHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 104 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQ----IIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 104 ~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~----~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
. .++ .++|++++|+++.... ...... +..++.+........|+++|+||+|+.
T Consensus 92 --~----~~~--~~~d~~i~v~D~~~~~-~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 92 --K----LIL--RGVDGIVFVADSAPNR-LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp --H----HHT--TTCCEEEEEEECCGGG-HHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred --H----HHH--hcCCEEEEEEECCcch-hhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 1 122 5899999998876321 112222 223333332222348999999999996
No 141
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.27 E-value=1.1e-15 Score=120.39 Aligned_cols=117 Identities=18% Similarity=0.171 Sum_probs=74.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCChHHHHHHHHHH
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVNYQALELIKGF 112 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~~~~~~~i~~~ 112 (236)
.+.++|+++|.+|+|||||++++++..... ...+++..........++ ..+.+|||||..+....... +
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~ 98 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL-------S 98 (204)
Confidence 367999999999999999999999765321 111111111222222333 35669999998654322211 1
Q ss_pred HhcCCCcEEEEEEeCCCC-CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+ ..+|++++|++++.. ++......++..+....+ ..|+++|+||+|+.
T Consensus 99 ~--~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~ 147 (204)
T 3th5_A 99 Y--PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR 147 (204)
Confidence 1 478999999776432 244433356666665443 38999999999996
No 142
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.3e-14 Score=121.92 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=99.6
Q ss_pred ccccCchhHHHHHHHHHHHHHhcCC----------------CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccc
Q 026593 11 GFQQFPSATQNKLIELLSKLKQENV----------------NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALR 74 (236)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~ 74 (236)
|...+..+.+.+++++.+++..... ...+|.++|.|++|||||+|+|++.+. .+.+++.+|..
T Consensus 30 ~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~ 108 (376)
T 4a9a_A 30 ATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLV 108 (376)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceee
Confidence 6666666777777777777642111 125899999999999999999999874 66788999999
Q ss_pred eEEEEeeeCCeeEEEEeCCCCCCCCCCh----HHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCcc
Q 026593 75 PVMVSRSKGGFTLNIIDTPGLVEAGYVN----YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQ 150 (236)
Q Consensus 75 ~~~~~~~~~~~~~~liDTPG~~d~~~~~----~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~ 150 (236)
+......+.+..+.++||||+....... .+.+..+ ..+|++++|.+.. .. ..+.+.+..-.+..+..
T Consensus 109 ~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i------~~ad~il~vvD~~--~p-~~~~~~i~~EL~~~~~~ 179 (376)
T 4a9a_A 109 TVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA------RTCNLLFIILDVN--KP-LHHKQIIEKELEGVGIR 179 (376)
T ss_dssp EEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHH------HHCSEEEEEEETT--SH-HHHHHHHHHHHHHTTEE
T ss_pred eeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHH------HhcCccccccccC--cc-HHHHHHHHHHHHHhhHh
Confidence 9988889999999999999997543222 2333333 3799999995543 21 22334443333333322
Q ss_pred -ccCcEEEEEeCCCC
Q 026593 151 -IWRKSLLVLTHAQL 164 (236)
Q Consensus 151 -~~~~~ivv~tk~D~ 164 (236)
...|.++++||+|.
T Consensus 180 l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 180 LNKTPPDILIKKKEK 194 (376)
T ss_dssp ETCCCCCEEEEECSS
T ss_pred hccCChhhhhhHhhh
Confidence 23688899999986
No 143
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.51 E-value=1.8e-14 Score=111.57 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=66.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccC-cCcccceEEEEeee-----CCeeEEEEeCCCCCCCCCChHHHHHHHH
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSF-QSEALRPVMVSRSK-----GGFTLNIIDTPGLVEAGYVNYQALELIK 110 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~liDTPG~~d~~~~~~~~~~~i~ 110 (236)
.++|+++|++|+|||||++++++......... +............. ....+.+|||||+..+......
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~------ 75 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPH------ 75 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHH------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHH------
Confidence 47999999999999999999998632122211 11111111222211 3457899999997433222211
Q ss_pred HHHhcCCCcEEEEEEeCCCC-C-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 111 GFLLNKTIDVLLYADRLDAY-R-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 111 ~~l~~~~~~~il~v~~~d~~-~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++ .+.+++++|++++.. + +. .-..|+..+..... ..|+++|+||+|+.
T Consensus 76 -~~--~~~~~~i~v~d~~~~~~s~~-~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 125 (184)
T 2zej_A 76 -FM--TQRALYLAVYDLSKGQAEVD-AMKPWLFNIKARAS---SSPVILVGTHLDVS 125 (184)
T ss_dssp -HH--HHSEEEEEEEEGGGCHHHHH-THHHHHHHHHHHCT---TCEEEEEEECGGGC
T ss_pred -Hc--cCCcEEEEEEeCCcchhHHH-HHHHHHHHHHhhCC---CCcEEEEEECCCcc
Confidence 12 267899999887542 1 21 12345555554332 38999999999985
No 144
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.4e-13 Score=117.89 Aligned_cols=145 Identities=21% Similarity=0.323 Sum_probs=71.7
Q ss_pred ccccccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCc------Ccccce--EEE
Q 026593 7 REWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ------SEALRP--VMV 78 (236)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~------~~~~~~--~~~ 78 (236)
+++.|+.+++.+.... ... ....++|+++|++|+|||||+|+|++...+.....+ ..+... ...
T Consensus 15 ~~~v~~~~l~~~~~~k------~~~--~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~ 86 (361)
T 2qag_A 15 PGYVGFANLPNQVHRK------SVK--KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTV 86 (361)
T ss_dssp ------CCHHHHHHTH------HHH--HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEE
T ss_pred CceEEeccchHHhCCe------eec--CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEE
Confidence 4566788877665431 111 125689999999999999999999887644332211 011111 112
Q ss_pred EeeeCCe--eEEEEeCCCCCCCC-------CChHHHHHHHHHHHh-----------cCCCcEEEEEEeCCCCCCChHHHH
Q 026593 79 SRSKGGF--TLNIIDTPGLVEAG-------YVNYQALELIKGFLL-----------NKTIDVLLYADRLDAYRVDDLDRQ 138 (236)
Q Consensus 79 ~~~~~~~--~~~liDTPG~~d~~-------~~~~~~~~~i~~~l~-----------~~~~~~il~v~~~d~~~~~~~~~~ 138 (236)
.....+. .+.+|||||+++.. .....+...+..++. ...+|+++|+++-....+...+..
T Consensus 87 ~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~ 166 (361)
T 2qag_A 87 EIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA 166 (361)
T ss_dssp C----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHH
T ss_pred EeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHH
Confidence 2223343 68999999996542 222211111112221 234578888843223457777766
Q ss_pred HHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 139 IIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 139 ~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+++.+. . ..|+++|+||+|+.
T Consensus 167 ~~~~l~----~--~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 167 FMKAIH----N--KVNIVPVIAKADTL 187 (361)
T ss_dssp HHHHTC----S---SCEEEEEECCSSS
T ss_pred HHHHhc----c--CCCEEEEEECCCCC
Confidence 665542 1 28999999999986
No 145
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.50 E-value=4.2e-13 Score=115.01 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=72.3
Q ss_pred ccE-EEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCC-hHHHHHHHHHHHh
Q 026593 37 TLT-ILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV-NYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~-IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~-~~~~~~~i~~~l~ 114 (236)
.++ |+++|.+|+|||||+|+|++... .+.+.+..|..+......+++..+.++||||+...... .-+.++.....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~-- 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE-- 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHH--
Confidence 455 99999999999999999999874 44445555555556667778889999999997442111 11112222222
Q ss_pred cCCCcEEEEEEeCCCCC--CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 115 NKTIDVLLYADRLDAYR--VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+|++++|+++.... .......+.+.+.. .+.. ..|+++|+||+|+.
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~-~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVS-GKPILVTLNKIDKI 305 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCC-SCCEEEEEECGGGC
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcC-CCCEEEEEECCCCC
Confidence 25789999997764321 11111122333333 2211 27899999999986
No 146
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.50 E-value=3.1e-13 Score=115.44 Aligned_cols=126 Identities=18% Similarity=0.295 Sum_probs=71.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccc-----ccCcC----------------------cccc--------------
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTV-----NSFQS----------------------EALR-------------- 74 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~-----~~~~~----------------------~~~~-------------- 74 (236)
...+|+++|.+|+|||||+|+|+|.++... ...+. .+..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999875311 11111 0000
Q ss_pred ---------eEEEEe-eeCCeeEEEEeCCCCCCCCC---Ch---HHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHH
Q 026593 75 ---------PVMVSR-SKGGFTLNIIDTPGLVEAGY---VN---YQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQ 138 (236)
Q Consensus 75 ---------~~~~~~-~~~~~~~~liDTPG~~d~~~---~~---~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~ 138 (236)
...... ...+..+.||||||+.+... .. +.+...+..++. ...++++++.+.+. .+...+.
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~-~~~~~~~- 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDA- 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTS-CGGGCHH-
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCC-ccchhHH-
Confidence 000000 11246799999999976321 11 133334444443 34556666654432 2433332
Q ss_pred HHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 139 IIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 139 ~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
...+....+. ..|+++|+||+|+.+.
T Consensus 187 -~~i~~~~~~~--~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 187 -LKVAKEVDPQ--GQRTIGVITKLDLMDE 212 (353)
T ss_dssp -HHHHHHHCTT--CTTEEEEEECGGGSCT
T ss_pred -HHHHHHhCcC--CCceEEEeccccccCc
Confidence 2233333222 3899999999999743
No 147
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.49 E-value=2.5e-13 Score=116.27 Aligned_cols=127 Identities=21% Similarity=0.275 Sum_probs=73.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceE---------------------------------------
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPV--------------------------------------- 76 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 76 (236)
.-.+|+|+|.+|+|||||+|+|+|.++...+.. .++..+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 335999999999999999999999765222211 0110000
Q ss_pred ---------------EEE-eeeCCeeEEEEeCCCCCCCCC------ChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCCh
Q 026593 77 ---------------MVS-RSKGGFTLNIIDTPGLVEAGY------VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDD 134 (236)
Q Consensus 77 ---------------~~~-~~~~~~~~~liDTPG~~d~~~------~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~ 134 (236)
... .......+.+|||||+.+... ....+...+..++ .++|+++++++......
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~-- 187 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDL-- 187 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCG--
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCc--
Confidence 000 111244689999999987532 1122333333444 48999998854322121
Q ss_pred HHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCC
Q 026593 135 LDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDG 169 (236)
Q Consensus 135 ~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 169 (236)
....++..+...... ..|+++|+||+|+.++..
T Consensus 188 ~~~~~~~l~~~~~~~--~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 188 ATSDAIKISREVDPS--GDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp GGCHHHHHHHHSCTT--CTTEEEEEECGGGCCTTC
T ss_pred CCHHHHHHHHHhccc--CCCEEEEEeCCccCCCcc
Confidence 223344444443322 379999999999975433
No 148
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.49 E-value=6.6e-13 Score=119.39 Aligned_cols=122 Identities=15% Similarity=0.162 Sum_probs=77.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEE------Ee----eeCCeeEEEEeCCCCCCCCCChH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMV------SR----SKGGFTLNIIDTPGLVEAGYVNY 103 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~liDTPG~~d~~~~~~ 103 (236)
....++|+++|.+|+|||||+|++++..... ...+......... .. ...+..+.+|||||.........
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~-~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDP-KESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3466999999999999999999999887421 1111111111111 11 11256899999999876665443
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCCCCCc
Q 026593 104 QALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPPDGLN 171 (236)
Q Consensus 104 ~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~ 171 (236)
..+ .++|++++|+++. .. .....++..+.+..+. .|+++|+||+|+.+.....
T Consensus 117 ~~l---------~~~d~ii~V~D~s--~~-~~~~~~~~~l~~~~~~---~pvilV~NK~Dl~~~~~v~ 169 (535)
T 3dpu_A 117 FFM---------TRSSVYMLLLDSR--TD-SNKHYWLRHIEKYGGK---SPVIVVMNKIDENPSYNIE 169 (535)
T ss_dssp HHH---------HSSEEEEEEECGG--GG-GGHHHHHHHHHHHSSS---CCEEEEECCTTTCTTCCCC
T ss_pred HHc---------cCCcEEEEEEeCC--Cc-hhHHHHHHHHHHhCCC---CCEEEEEECCCcccccccC
Confidence 332 2799999996553 33 3446777888776543 8999999999997444433
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.48 E-value=3.6e-13 Score=119.66 Aligned_cols=120 Identities=12% Similarity=0.168 Sum_probs=76.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccc------------------------------ccCcCcccceEEEEeeeC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTV------------------------------NSFQSEALRPVMVSRSKG 83 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 83 (236)
.++.++|+++|.+++|||||+|+|++...... ....+.+...........
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 56789999999999999999999985521110 011223333344455667
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC------CChHHHHHHHHHHHhhCccccCcEEE
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR------VDDLDRQIIKAVTGTFGKQIWRKSLL 157 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~------~~~~~~~~l~~l~~~~~~~~~~~~iv 157 (236)
+..+.||||||+.++ ...+...+ ..+|++++|++.+... +.....+.+..+.. .+. .|+++
T Consensus 110 ~~~~~iiDTPG~~~f-------~~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iIv 176 (483)
T 3p26_A 110 RANFTIVDAPGHRDF-------VPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLII 176 (483)
T ss_dssp SCEEEEECCCCCGGG-------HHHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEEE
T ss_pred CceEEEEECCCcHHH-------HHHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEEE
Confidence 889999999999543 22222333 5899999997775421 22333343333332 232 57999
Q ss_pred EEeCCCCCC
Q 026593 158 VLTHAQLCP 166 (236)
Q Consensus 158 v~tk~D~~~ 166 (236)
|+||+|+.+
T Consensus 177 viNK~Dl~~ 185 (483)
T 3p26_A 177 AMNKMDNVD 185 (483)
T ss_dssp EEECGGGGT
T ss_pred EEECcCccc
Confidence 999999963
No 150
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.47 E-value=8.1e-14 Score=118.40 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=81.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-eeEEEEeCCCCCCC----CCChHHHHHHHHHH
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEA----GYVNYQALELIKGF 112 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~liDTPG~~d~----~~~~~~~~~~i~~~ 112 (236)
.+|+|+|.+|+|||||+|+|++.+. .+..++..|..+......+.+ ..+.+|||||+.+. ......+++.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--- 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--- 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH---
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH---
Confidence 3688999999999999999998764 334555556555555555554 78999999997432 22334444433
Q ss_pred HhcCCCcEEEEEEeCCCC---CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAY---RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~---~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..++++++|+++... ........++..+......-...|+++|+||+|+.
T Consensus 235 ---~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 235 ---ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp ---HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred ---HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 268999999877541 11112234556666543222348999999999985
No 151
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.47 E-value=1.3e-13 Score=122.78 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=77.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
..++|+++|.+|+|||||+|+|++.... ...+ |.........+.+..+.+|||||..+...... .++
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~~--T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~-- 387 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIP--TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWR-------HYY-- 387 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEESSSCEEEEEEECCCGGGSGGGG-------GGG--
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccceeEEEEEeCCEEEEEEECCCcHHHHHHHH-------HHh--
Confidence 5689999999999999999999988732 2222 33444455667888999999999765543221 122
Q ss_pred CCCcEEEEEEeCCCCC-CChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 116 KTIDVLLYADRLDAYR-VDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|++|+|+++.... +... ..++..+..... ....|+++|+||+|+.
T Consensus 388 ~~ad~~i~V~D~~~~~s~~~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 388 TGTQGLIFVVDCADRDRIDEA-RQELHRIINDRE-MRDAIILIFANKQDLP 436 (497)
T ss_dssp TTCCEEEEEEETTCGGGHHHH-HHHHHHHHTSGG-GTTCEEEEEEECCSSS
T ss_pred ccCCEEEEEEECcchhHHHHH-HHHHHHHhhhhh-cCCCcEEEEEECCCCC
Confidence 5899999998875422 3222 223333322211 1238999999999996
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.46 E-value=1.8e-12 Score=113.82 Aligned_cols=119 Identities=10% Similarity=0.095 Sum_probs=75.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccc------------------------------CcCcccceEEEEeeeC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKG 83 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~ 83 (236)
.+..++|+++|.+++|||||+|+|++........ ..+.|...........
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3466999999999999999999997553211110 0123333344455667
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCC------hHHHHHHHHHHHhhCccccCcEEE
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVD------DLDRQIIKAVTGTFGKQIWRKSLL 157 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~------~~~~~~l~~l~~~~~~~~~~~~iv 157 (236)
+..+.+|||||+.++ ...+...+ ..+|++++|++.+...+. .+..+.+..+... +. +++++
T Consensus 94 ~~~~~iiDTPGh~~f-------~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~v---~~iIv 160 (439)
T 3j2k_7 94 KKHFTILDAPGHKSF-------VPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GV---KHLIV 160 (439)
T ss_pred CeEEEEEECCChHHH-------HHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-CC---CeEEE
Confidence 889999999998543 22333333 479999999776432121 2334444433332 21 44999
Q ss_pred EEeCCCCC
Q 026593 158 VLTHAQLC 165 (236)
Q Consensus 158 v~tk~D~~ 165 (236)
|+||+|+.
T Consensus 161 viNK~Dl~ 168 (439)
T 3j2k_7 161 LINKMDDP 168 (439)
T ss_pred EeecCCCc
Confidence 99999985
No 153
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.45 E-value=9.1e-13 Score=103.19 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=73.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe--eEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF--TLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|++|+|||||++++++....... .+..+.........+++. .+.+|||||........... +
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~---~----- 75 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY---Y----- 75 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHH---H-----
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH---H-----
Confidence 479999999999999999999987642221 122222333445556665 56789999976554332211 1
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..++++++|+++...........++..+..... ...|+++|+||+|+.+
T Consensus 76 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 76 -RGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRH 124 (199)
T ss_dssp -TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred -hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECccccc
Confidence 478999999776532111111234444444322 2379999999999864
No 154
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.44 E-value=6.1e-13 Score=111.70 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=69.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
||+++|.+|+||||+++.+.+............|........ .....+.+|||||+.++....-.....+ .++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~l~~~~yy------r~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPSYDSERLF------KSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCSHHHHHHH------TTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchhhhhhhhc------cCC
Confidence 689999999999999998876532111111111111111111 1336899999999988753110111122 489
Q ss_pred cEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 119 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 119 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++++||+++... +...-..+.+++..........|+++|+||+|+.
T Consensus 74 ~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 74 GALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp SEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred CEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 999999776543 4443333433333221112238999999999996
No 155
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.41 E-value=3.1e-12 Score=99.64 Aligned_cols=118 Identities=17% Similarity=0.105 Sum_probs=74.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCee--EEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFT--LNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.++|+++|++|+|||||++.+++...... ..+..+.........+++.. +.+|||||+...........
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~-------- 99 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY-------- 99 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCS-CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHH--------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHh--------
Confidence 48999999999999999999998764322 12222223334455567764 45799999876544332221
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..++++++|+++........-..++..+.+... ...|+++++||+|+.+
T Consensus 100 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 100 -RGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRH 148 (191)
T ss_dssp -TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred -hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 368899999776431100111234444444322 2378999999999863
No 156
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.40 E-value=3e-12 Score=112.30 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=74.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccc----------C----------------------cCcccceEEEEeee
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS----------F----------------------QSEALRPVMVSRSK 82 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~----------~----------------------~~~~~~~~~~~~~~ 82 (236)
++.++|+++|.+++|||||+|+|++........ . .+.+..........
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 345899999999999999999998653111110 0 01122222333455
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
.+..+.+|||||+.++ ...+...+ ..+|++++|++.+. .......+++..+... +. +|+++|+||+
T Consensus 102 ~~~~~~iiDtpGh~~f-------~~~~~~~~--~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~~-~~---~~iIvviNK~ 167 (434)
T 1zun_B 102 AKRKFIIADTPGHEQY-------TRNMATGA--STCDLAIILVDARY-GVQTQTRRHSYIASLL-GI---KHIVVAINKM 167 (434)
T ss_dssp SSEEEEEEECCCSGGG-------HHHHHHHH--TTCSEEEEEEETTT-CSCHHHHHHHHHHHHT-TC---CEEEEEEECT
T ss_pred CCceEEEEECCChHHH-------HHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEEcC
Confidence 6788999999998543 12222223 58999999977654 2445555555544432 21 5799999999
Q ss_pred CCC
Q 026593 163 QLC 165 (236)
Q Consensus 163 D~~ 165 (236)
|+.
T Consensus 168 Dl~ 170 (434)
T 1zun_B 168 DLN 170 (434)
T ss_dssp TTT
T ss_pred cCC
Confidence 996
No 157
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.1e-12 Score=119.43 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=75.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCcccccc------------------------------CcCcccceEEEEeeeC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKG 83 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~ 83 (236)
.++.++|+++|.+|+|||||+|+|++........ ..+.|...........
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4567999999999999999999999764322110 1223333334445567
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCC----C--CChHHHHHHHHHHHhhCccccCcEEE
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY----R--VDDLDRQIIKAVTGTFGKQIWRKSLL 157 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~----~--~~~~~~~~l~~l~~~~~~~~~~~~iv 157 (236)
+..+.||||||+.++ ...+... ...+|++|+|++.+.. . ......+.+..+. ..+. +++++
T Consensus 244 ~~~~~iiDTPG~e~f-------~~~~~~~--~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~lgi---~~iIV 310 (611)
T 3izq_1 244 RANFTIVDAPGHRDF-------VPNAIMG--ISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLGI---HNLII 310 (611)
T ss_dssp SCEEEEEECCSSSCH-------HHHHTTT--SSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-TTTC---CEEEE
T ss_pred CceEEEEECCCCccc-------HHHHHHH--HhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-HcCC---CeEEE
Confidence 789999999998542 2222222 2589999999776431 1 1223333333332 2222 56999
Q ss_pred EEeCCCCCC
Q 026593 158 VLTHAQLCP 166 (236)
Q Consensus 158 v~tk~D~~~ 166 (236)
|+||+|+.+
T Consensus 311 VvNKiDl~~ 319 (611)
T 3izq_1 311 AMNKMDNVD 319 (611)
T ss_dssp EEECTTTTT
T ss_pred EEecccccc
Confidence 999999863
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.40 E-value=3.3e-12 Score=111.01 Aligned_cols=118 Identities=10% Similarity=0.110 Sum_probs=76.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCC---C-----ccc---cc-----cCcCcccceEEEEeeeCCeeEEEEeCCCCC
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGE---R-----VVT---VN-----SFQSEALRPVMVSRSKGGFTLNIIDTPGLV 96 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~---~-----~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~liDTPG~~ 96 (236)
..++.++|+++|++++|||||+++|++. . ... .. ...+.+...........+..+.+|||||+.
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3457799999999999999999999873 1 000 00 012223333344455567899999999986
Q ss_pred CCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCc-EEEEEeCCCCC
Q 026593 97 EAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (236)
Q Consensus 97 d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivv~tk~D~~ 165 (236)
++ ...+...+ ..+|++++|++.+. ....+..+++..+... + .| +++++||+|+.
T Consensus 87 ~f-------~~~~~~~~--~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~ 141 (405)
T 2c78_A 87 DY-------IKNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFMNKVDMV 141 (405)
T ss_dssp GG-------HHHHHHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred HH-------HHHHHHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEECcccc
Confidence 53 22222222 58999999977653 2445556666555442 2 55 89999999986
No 159
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.40 E-value=6e-12 Score=116.28 Aligned_cols=124 Identities=22% Similarity=0.328 Sum_probs=77.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccce----------------------------------------
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRP---------------------------------------- 75 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~---------------------------------------- 75 (236)
.-.+|+|+|.+++|||||+|+|+|.++...+.. .+|..+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 457999999999999999999999875322211 111111
Q ss_pred -----------EEEEe-eeCCeeEEEEeCCCCCCCCC---C---hHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHH
Q 026593 76 -----------VMVSR-SKGGFTLNIIDTPGLVEAGY---V---NYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDR 137 (236)
Q Consensus 76 -----------~~~~~-~~~~~~~~liDTPG~~d~~~---~---~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~ 137 (236)
..... ......++|+||||+..... . .....+.+..++. ..+|++++|.+... .+...+.
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~-~~~~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTS-CSSSCHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCC-CcchhHH
Confidence 01111 11233689999999986321 1 1234444445554 67899999965542 2444444
Q ss_pred -HHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 138 -QIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 138 -~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
.++..+... ..|+++|+||+|+.++
T Consensus 207 l~ll~~L~~~-----g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 207 LKIAKEVDPQ-----GQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHHHHCTT-----CSSEEEEEECTTSSCT
T ss_pred HHHHHHHHhc-----CCCEEEEEeCcccCCc
Confidence 455554432 2899999999999744
No 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.39 E-value=5.4e-13 Score=119.49 Aligned_cols=115 Identities=10% Similarity=0.130 Sum_probs=77.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc---------------ccc------CcCcccceEEEEeeeCCeeEEEEeCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT---------------VNS------FQSEALRPVMVSRSKGGFTLNIIDTPG 94 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~---------------~~~------~~~~~~~~~~~~~~~~~~~~~liDTPG 94 (236)
...+|+++|++|+|||||+|+|++..... +.+ ..+.+.........+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 45699999999999999999997221110 110 122333444556677889999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 95 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 95 ~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+.++.. ...+.+ ..+|++++|++... ..+.....++..+... ..|+++|+||+|+.
T Consensus 92 ~~df~~---~~~~~l------~~aD~allVvDa~~-g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 92 HADFTE---DTYRTL------TAVDSALMVIDAAK-GVEPRTIKLMEVCRLR-----HTPIMTFINKMDRD 147 (528)
T ss_dssp STTCCH---HHHHGG------GGCSEEEEEEETTT-CSCHHHHHHHHHHHTT-----TCCEEEEEECTTSC
T ss_pred chhHHH---HHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence 977542 222222 47899999966543 2555555555554433 28999999999985
No 161
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.39 E-value=9.3e-13 Score=114.08 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=44.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEe---------------------eeCC---eeEEEEeCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSR---------------------SKGG---FTLNIIDTP 93 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~---~~~~liDTP 93 (236)
++|+++|.+|+|||||+|+|++.. ..+++.+.+|..+..... .+.+ ..+.+||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 589999999999999999999987 455666655554433321 1122 479999999
Q ss_pred CCCCCCCChHHHHHHHHHHH-hcCCCcEEEEEEeCCC
Q 026593 94 GLVEAGYVNYQALELIKGFL-LNKTIDVLLYADRLDA 129 (236)
Q Consensus 94 G~~d~~~~~~~~~~~i~~~l-~~~~~~~il~v~~~d~ 129 (236)
|+.......... ...++ ....+|++++|++...
T Consensus 80 G~~~~a~~~~~l---~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 80 GLVPGAHEGRGL---GNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp ------------------CCCSSTTCSEEEEEEETTC
T ss_pred CcccchhhhhhH---HHHHHHHHhcCCEEEEEEeccc
Confidence 996532211111 11222 1258999999987744
No 162
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.39 E-value=3.6e-12 Score=113.11 Aligned_cols=117 Identities=9% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccc------cccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHH
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVT------VNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALE 107 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~ 107 (236)
.++.++|+++|.+++|||||+++|++.+... .....+.|.........+++..+.+|||||+. ++..
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------~~~~ 88 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIR 88 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------HHHH
Confidence 3467999999999999999999999876211 11111222222223345578899999999973 2333
Q ss_pred HHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 108 LIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 108 ~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+...+ ..+|++++|++.+. ....+..+.+..+... + .|.++|+||+|+.
T Consensus 89 ~~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~-~----ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 89 AVVSAA--DIIDLALIVVDAKE-GPKTQTGEHMLILDHF-N----IPIIVVITKSDNA 138 (482)
T ss_dssp HHHHHT--TSCCEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCBCEEEECTTSS
T ss_pred HHHHHH--hhCCEEEEEEecCC-CccHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence 333333 58999999977643 2445556666555442 2 6779999999996
No 163
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.38 E-value=7.9e-12 Score=98.33 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=69.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC-ccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCC---hHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER-VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYV---NYQALELIKG 111 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~---~~~~~~~i~~ 111 (236)
+..+|+++|++|+|||||+|+|+|.. ...+.+.++.+..... ..+.+ .+.+|||||+...... ...+...+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 56799999999999999999999876 2222333333322222 22233 6789999998653211 1222233333
Q ss_pred HHh-cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLL-NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~-~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++. ...++++++++++.. ..+..+..+..++... ..|+++|.||+|+.
T Consensus 102 ~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~~-----~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRH-PLKDLDQQMIEWAVDS-----NIAVLVLLTKADKL 150 (210)
T ss_dssp HHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred HHHhhhcccEEEEEEECCC-CCchhHHHHHHHHHHc-----CCCeEEEEecccCC
Confidence 332 246899999977753 2444444444444322 27899999999986
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.36 E-value=8.9e-12 Score=108.06 Aligned_cols=115 Identities=10% Similarity=0.098 Sum_probs=73.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc----------ccc-----CcCcccceEEEEeeeCCeeEEEEeCCCCCCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT----------VNS-----FQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~----------~~~-----~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~ 100 (236)
+.++|+++|++++|||||+++|++..... ... ..+.|...........+..+.+|||||+.+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~--- 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD--- 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH---
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH---
Confidence 56899999999999999999998741100 000 111122222233445678999999999743
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCc-EEEEEeCCCCC
Q 026593 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (236)
Q Consensus 101 ~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivv~tk~D~~ 165 (236)
+...+...+ ..+|++++|++.+. ....+..+.+..+... + .| +++++||+|+.
T Consensus 79 ----f~~~~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~-~----vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 79 ----YVKNMITGT--APLDGCILVVAAND-GPMPQTREHLLLARQI-G----VEHVVVYVNKADAV 132 (397)
T ss_dssp ----HHHHHHHTS--SCCSEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred ----HHHHHHhhH--hhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCeEEEEEECcccC
Confidence 233333333 58999999977654 2444445555444432 2 55 78999999986
No 165
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.35 E-value=5.8e-12 Score=109.43 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=72.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcc---------cceEEE-----Ee-----eeCCeeEEEEeCCC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEA---------LRPVMV-----SR-----SKGGFTLNIIDTPG 94 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~---------~~~~~~-----~~-----~~~~~~~~liDTPG 94 (236)
.++.++|+++|.+|+|||||+|+|++............+ ...... .. ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 346799999999999999999999985421111000000 000000 00 11126899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 95 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 95 ~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..++ ...+...+ ..+|++++|++.+......+..+++..+... +. .|+++|+||+|+.
T Consensus 85 h~~~-------~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~ 142 (403)
T 3sjy_A 85 HEVL-------MATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVV 142 (403)
T ss_dssp CGGG-------HHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred cHHH-------HHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECcccc
Confidence 7432 22233333 5899999997765432244455666555443 22 6899999999996
No 166
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.35 E-value=9.5e-14 Score=124.17 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=78.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee-CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK-GGFTLNIIDTPGLVEAGYVNYQALELIKGFLL 114 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~ 114 (236)
.+++|+++|++|+|||||+++|++...... ..++.|.........+ .+..+.||||||+.++....... +
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~-------~- 73 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARG-------T- 73 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS-SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSS-------S-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHH-------H-
Confidence 467899999999999999999998764332 2333333333333333 45689999999987765433211 1
Q ss_pred cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 115 NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 115 ~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
..+|++++|++.+. .......+.+..+... ..|+++++||+|+.+.
T Consensus 74 -~~aD~vILVVDa~d-g~~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 74 -QVTDIVILVVAADD-GVMKQTVESIQHAKDA-----HVPIVLAINKCDKAEA 119 (537)
T ss_dssp -BSBSSCEEECBSSS-CCCHHHHHHHHHHHTT-----TCCEEECCBSGGGTTT
T ss_pred -ccCCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCcEEEEEeccccccc
Confidence 47899999966543 2455555555554432 2789999999998643
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.34 E-value=4.8e-13 Score=118.68 Aligned_cols=115 Identities=12% Similarity=0.092 Sum_probs=76.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLN 115 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~ 115 (236)
.+.+|+++|++++|||||+++|++..+. ....++.|.....+...+++..+.||||||+.++...... . .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~-------~--~ 72 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRAR-------G--A 72 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCS-------S--S
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHH-------H--H
Confidence 5679999999999999999999875432 1222223333333344567788999999999877543311 1 1
Q ss_pred CCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 116 KTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 116 ~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
..+|++++|++.+.. ...+..+.+..+... ..|+++++||+|+.+
T Consensus 73 ~~aD~aILVVda~~g-~~~qT~e~l~~~~~~-----~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 73 QATDIVVLVVAADDG-VMPQTIEAIQHAKAA-----QVPVVVAVNKIDKPE 117 (501)
T ss_dssp BSCSSEEEEEETTTB-SCTTTHHHHHHHHHT-----TCCEEEEEECSSSST
T ss_pred hhCCEEEEEeecccC-ccHHHHHHHHHHHhc-----CceEEEEEEeccccc
Confidence 478999999776542 333334444444332 278999999999863
No 168
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.33 E-value=3.3e-12 Score=114.45 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=72.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc---------------ccc------CcCcccceEEEEeeeCCeeEEEEeCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT---------------VNS------FQSEALRPVMVSRSKGGFTLNIIDTPG 94 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~---------------~~~------~~~~~~~~~~~~~~~~~~~~~liDTPG 94 (236)
...+|+++|++|+|||||+++|++..... +.+ ..+.+.........+.+..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 45799999999999999999998642111 001 011111222334567888999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 95 LVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 95 ~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+.++. .... .++ ..+|++++|++... ........++..+.. ...|+++++||+|+.
T Consensus 92 ~~df~---~~~~----~~l--~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 92 HEDFS---EDTY----RTL--TAVDCCLMVIDAAK-GVEDRTRKLMEVTRL-----RDTPILTFMNKLDRD 147 (529)
T ss_dssp STTCC---HHHH----HGG--GGCSEEEEEEETTT-CSCHHHHHHHHHHTT-----TTCCEEEEEECTTSC
T ss_pred ChhHH---HHHH----HHH--HHCCEEEEEEeCCc-cchHHHHHHHHHHHH-----cCCCEEEEEcCcCCc
Confidence 97654 2222 222 47999999976643 244444444433322 127899999999986
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.32 E-value=6.8e-12 Score=110.01 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=70.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccc------------------------cc------CcCcccceEEEEeeeCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTV------------------------NS------FQSEALRPVMVSRSKGG 84 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~------------------------~~------~~~~~~~~~~~~~~~~~ 84 (236)
++.++|+++|++|+|||||+++|++...... .+ ..+.|.........+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 4678999999999999999999986411000 00 11122222233455677
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCC------ChHHHHHHHHHHHhhCccccCcEEEE
Q 026593 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV------DDLDRQIIKAVTGTFGKQIWRKSLLV 158 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~------~~~~~~~l~~l~~~~~~~~~~~~ivv 158 (236)
..+.+|||||+.++ ...+...+ ..+|++++|++.+...+ ..+..+.+..+.. .+. .+++++
T Consensus 84 ~~~~iiDtpG~~~f-------~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~iivv 150 (435)
T 1jny_A 84 YFFTIIDAPGHRDF-------VKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLIVA 150 (435)
T ss_dssp CEEEECCCSSSTTH-------HHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCEEE
T ss_pred eEEEEEECCCcHHH-------HHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEE
Confidence 89999999998653 22222222 58999999977754211 1122333322222 221 579999
Q ss_pred EeCCCCCC
Q 026593 159 LTHAQLCP 166 (236)
Q Consensus 159 ~tk~D~~~ 166 (236)
+||+|+.+
T Consensus 151 iNK~Dl~~ 158 (435)
T 1jny_A 151 VNKMDLTE 158 (435)
T ss_dssp EECGGGSS
T ss_pred EEcccCCC
Confidence 99999963
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.31 E-value=2.3e-12 Score=113.73 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=71.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCCC--ccc----------------------ccc------CcCcccceEEEEeeeC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGER--VVT----------------------VNS------FQSEALRPVMVSRSKG 83 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~~--~~~----------------------~~~------~~~~~~~~~~~~~~~~ 83 (236)
.++.++|+++|.+++|||||+|+|++.. +.. ..+ ..+.+...........
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 3456899999999999999999998641 000 000 0122322233344567
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC----CC--hHHHHHHHHHHHhhCccccCcEEE
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR----VD--DLDRQIIKAVTGTFGKQIWRKSLL 157 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~----~~--~~~~~~l~~l~~~~~~~~~~~~iv 157 (236)
+..+.+|||||+.++ ...+...+ ..+|++++|++.+... |. .+..+.+..+.. .+. +++++
T Consensus 84 ~~~~~iiDtPGh~~f-------~~~~~~~~--~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~iiv 150 (458)
T 1f60_A 84 KYQVTVIDAPGHRDF-------IKNMITGT--SQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLIV 150 (458)
T ss_dssp SEEEEEEECCCCTTH-------HHHHHHSS--SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEEE
T ss_pred CceEEEEECCCcHHH-------HHHHHhhh--hhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeEEE
Confidence 789999999997532 22222222 5899999996654210 10 022333332222 221 45999
Q ss_pred EEeCCCCC
Q 026593 158 VLTHAQLC 165 (236)
Q Consensus 158 v~tk~D~~ 165 (236)
|+||+|+.
T Consensus 151 viNK~Dl~ 158 (458)
T 1f60_A 151 AVNKMDSV 158 (458)
T ss_dssp EEECGGGG
T ss_pred EEEccccc
Confidence 99999986
No 171
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.31 E-value=5.5e-12 Score=116.46 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=76.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc-----------cccC------cCcccceEEEEeeeCCeeEEEEeCCCCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT-----------VNSF------QSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~-----------~~~~------~~~~~~~~~~~~~~~~~~~~liDTPG~~d~ 98 (236)
...+|+++|++|+|||||+|+|++..... ..++ .+.+.........+.+..+.+|||||+.++
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 45799999999999999999998421110 1111 112222334455677889999999999765
Q ss_pred CCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 99 ~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
. .+..+.++ .+|++++|++... ..+......+..+.+. ..|+++|+||+|+..
T Consensus 89 ~---~~~~~~l~------~aD~~llVvDa~~-g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 89 T---VEVERSLR------VLDGAVTVLDAQS-GVEPQTETVWRQATTY-----GVPRIVFVNKMDKLG 141 (693)
T ss_dssp C---HHHHHHHH------HCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTT
T ss_pred H---HHHHHHHH------HCCEEEEEECCCC-CCcHHHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 3 23333333 6899999976543 3555556665555543 289999999999863
No 172
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.31 E-value=7e-12 Score=109.03 Aligned_cols=122 Identities=20% Similarity=0.364 Sum_probs=66.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcccccc--C--c-CcccceEEEEe--eeCC--eeEEEEeCCCCCCCCCCh---H
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNS--F--Q-SEALRPVMVSR--SKGG--FTLNIIDTPGLVEAGYVN---Y 103 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~--~--~-~~~~~~~~~~~--~~~~--~~~~liDTPG~~d~~~~~---~ 103 (236)
-.++|+|+|++|+|||||+|.|+|......+. . . ..+........ ...+ ..+.+|||||++...... .
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 45799999999999999999999986422210 0 0 01111111111 1122 268999999997642111 1
Q ss_pred HHHHHH----HHH-----------HhcCCCcEEEEEEeCCC--CCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 104 QALELI----KGF-----------LLNKTIDVLLYADRLDA--YRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 104 ~~~~~i----~~~-----------l~~~~~~~il~v~~~d~--~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+...+ ..+ +..+.+|++||. ++. ..+...+..+++.+.. ..++++|+||+|+.
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~l--dePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll 180 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYF--IAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL 180 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEE--CCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEE--ecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCc
Confidence 111111 111 122456677777 544 3578777777766642 28999999999986
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.28 E-value=3.4e-13 Score=122.39 Aligned_cols=118 Identities=12% Similarity=0.071 Sum_probs=58.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccc------------------------------CcCcccceEEEEeeeCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS------------------------------FQSEALRPVMVSRSKGG 84 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 84 (236)
+..++|+++|++++|||||+|+|++........ .++.|...........+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 345799999999999999999997532111110 11223333334445567
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCC----CC--ChHHHHHHHHHHHhhCccccCcEEEE
Q 026593 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY----RV--DDLDRQIIKAVTGTFGKQIWRKSLLV 158 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~----~~--~~~~~~~l~~l~~~~~~~~~~~~ivv 158 (236)
..+.||||||+.++...... .+ ..+|++|+|++.+.. .+ .....+.+..+.. .+. +++++|
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~---~~------~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~iIvv 321 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIA---GA------SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SEIVVS 321 (592)
T ss_dssp ----CCEEESSSEEEEECCC----------------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CCEEEE
T ss_pred eEEEEEECCChHHHHHHHHH---HH------hhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEE
Confidence 88999999999765322111 11 378999999766431 12 3444555444443 221 459999
Q ss_pred EeCCCCC
Q 026593 159 LTHAQLC 165 (236)
Q Consensus 159 ~tk~D~~ 165 (236)
+||+|+.
T Consensus 322 iNKiDl~ 328 (592)
T 3mca_A 322 VNKLDLM 328 (592)
T ss_dssp EECGGGG
T ss_pred Eeccccc
Confidence 9999986
No 174
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.28 E-value=7.5e-11 Score=102.62 Aligned_cols=118 Identities=13% Similarity=0.128 Sum_probs=71.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccc--CcCcccceEEEEeee---------------C--------CeeEEE
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS--FQSEALRPVMVSRSK---------------G--------GFTLNI 89 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~--------~~~~~l 89 (236)
.+.++|+++|+.++|||||+++|+|........ .++.|.........+ . ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 356899999999999999999999764221111 122222221111111 0 167999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 90 IDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 90 iDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
|||||+. ++...+...+ ..+|++++|++.+......+..+.+..+.. .+. .|+++|+||+|+.
T Consensus 88 iDtPGh~-------~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~---~~iivviNK~Dl~ 150 (410)
T 1kk1_A 88 IDAPGHE-------ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELV 150 (410)
T ss_dssp EECSSHH-------HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGS
T ss_pred EECCChH-------HHHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEECccCC
Confidence 9999963 2223332222 367999999776532114444555554443 232 6899999999986
No 175
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.28 E-value=1.7e-11 Score=105.32 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=69.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTI 118 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~ 118 (236)
+|+++|.+++|||||+++|+... .|.........+.+..+.+|||||+.++. ......+ ..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~g---------iTi~~~~~~~~~~~~~i~iiDtPGh~~f~---~~~~~~~------~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKG---------TSSDITMYNNDKEGRNMVFVDAHSYPKTL---KSLITAL------NIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEE---------EESSSEEEEECSSSSEEEEEECTTTTTCH---HHHHHHH------HTC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC---------EEEEeeEEEEecCCeEEEEEECCChHHHH---HHHHHHH------HHC
Confidence 99999999999999999999111 12233344556677889999999997641 2222222 389
Q ss_pred cEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcE-EEEEe-CCCC
Q 026593 119 DVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS-LLVLT-HAQL 164 (236)
Q Consensus 119 ~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivv~t-k~D~ 164 (236)
|++++|++ +. ....+..+++..+... + .|. ++++| |+|+
T Consensus 85 D~ailVvd-~~-g~~~qt~e~~~~~~~~-~----i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 85 DIAVLCIP-PQ-GLDAHTGECIIALDLL-G----FKHGIIALTRSDST 125 (370)
T ss_dssp SEEEEEEC-TT-CCCHHHHHHHHHHHHT-T----CCEEEEEECCGGGS
T ss_pred CEEEEEEc-CC-CCcHHHHHHHHHHHHc-C----CCeEEEEEEeccCC
Confidence 99999966 32 3445555555555433 2 455 89999 9998
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.27 E-value=3.1e-11 Score=111.47 Aligned_cols=116 Identities=12% Similarity=0.092 Sum_probs=73.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCcc-----------cccc------CcCcccceEEEEeeeCCeeEEEEeCCCCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVV-----------TVNS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~-----------~~~~------~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~ 98 (236)
...+|+++|++|+|||||+++|+..... ...+ ....+.........+.+..+.+|||||+.++
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 4579999999999999999999832100 0001 1112223334455677889999999999664
Q ss_pred CCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 99 ~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.....+.++ .+|++++|++... ..+......+..+.+. ..|+++|+||+|+..
T Consensus 91 ---~~~~~~~l~------~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 91 ---TIEVERSMR------VLDGAIVVFDSSQ-GVEPQSETVWRQAEKY-----KVPRIAFANKMDKTG 143 (691)
T ss_dssp ---HHHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTT
T ss_pred ---HHHHHHHHH------HCCEEEEEEECCC-CcchhhHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 223333332 6899999977643 2455555555554442 289999999999863
No 177
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.27 E-value=3.3e-11 Score=109.25 Aligned_cols=115 Identities=11% Similarity=0.101 Sum_probs=73.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccc--eEEEEee----------------eCCeeEEEEeCCCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALR--PVMVSRS----------------KGGFTLNIIDTPGLVE 97 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~--~~~~~~~----------------~~~~~~~liDTPG~~d 97 (236)
.+.+|+++|++++|||||+++|++..+.... ..+.+.. ....... +....+.||||||+.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e-~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE-AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc-CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 5679999999999999999999976432111 0011111 1111110 1122589999999987
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 98 ~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
+...... . ...+|++++|++++. .+..+....+..+... ..|+++++||+|+.+
T Consensus 83 F~~~~~r-------~--~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRKR-------G--GALADLAILIVDINE-GFKPQTQEALNILRMY-----RTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCS-------S--SBSCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGST
T ss_pred HHHHHHH-------H--HhhCCEEEEEEECCC-CccHhHHHHHHHHHHc-----CCeEEEEeccccccc
Confidence 7544321 1 136899999977654 3555556666655542 289999999999863
No 178
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.26 E-value=1.2e-10 Score=101.27 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=71.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCcccccc--CcCcccceEEEEeee---------------C--------CeeEEE
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNS--FQSEALRPVMVSRSK---------------G--------GFTLNI 89 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~--------~~~~~l 89 (236)
++.++|+++|+.++|||||+++|+|........ .++.|.......... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 366999999999999999999999764221111 111122211111000 1 167999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCCC
Q 026593 90 IDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCPP 167 (236)
Q Consensus 90 iDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 167 (236)
|||||+. ++...+... ...+|++++|++.+..-...+..+.+..+.. .+. .|+++++||+|+.+.
T Consensus 86 iDtPGh~-------~f~~~~~~~--~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 86 VDSPGHE-------TLMATMLSG--ASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE 150 (408)
T ss_dssp EECSSHH-------HHHHHHHTT--CSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT
T ss_pred EECCCHH-------HHHHHHHHh--HhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH
Confidence 9999963 222222211 2467999999776532124444555544432 232 689999999999743
No 179
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.26 E-value=8.4e-12 Score=110.38 Aligned_cols=118 Identities=10% Similarity=0.035 Sum_probs=64.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccc------------------------ccc------CcCcccceEEEEeeeCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVT------------------------VNS------FQSEALRPVMVSRSKGG 84 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~------------------------~~~------~~~~~~~~~~~~~~~~~ 84 (236)
++.++|+++|+.++|||||+++|++..... ..+ ..+.|.......+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 466899999999999999999997421100 000 01112222222345578
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC----CC--hHHHHHHHHHHHhhCccccCcEEEE
Q 026593 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR----VD--DLDRQIIKAVTGTFGKQIWRKSLLV 158 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~----~~--~~~~~~l~~l~~~~~~~~~~~~ivv 158 (236)
..+.+|||||+.++.. .+...+ ..+|++++|++.+... |. ....+.+..+.. .+. ++++++
T Consensus 121 ~~~~iiDtPGh~~f~~-------~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~iivv 187 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVT-------NMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHLVVV 187 (467)
T ss_dssp EEEEECCCCC------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSEEEE
T ss_pred eEEEEEECCCcHHHHH-------HHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEEEEE
Confidence 8999999999865432 111112 4899999997765321 11 223333333322 221 349999
Q ss_pred EeCCCCC
Q 026593 159 LTHAQLC 165 (236)
Q Consensus 159 ~tk~D~~ 165 (236)
+||+|+.
T Consensus 188 iNK~Dl~ 194 (467)
T 1r5b_A 188 INKMDEP 194 (467)
T ss_dssp EECTTST
T ss_pred EECccCC
Confidence 9999995
No 180
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.25 E-value=2.3e-11 Score=100.69 Aligned_cols=94 Identities=20% Similarity=0.349 Sum_probs=58.3
Q ss_pred cccccccCchhHHHHHHHHHHHHHhcC--CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCe
Q 026593 8 EWAGFQQFPSATQNKLIELLSKLKQEN--VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGF 85 (236)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
.+.|+.+|.....+.+.+..+....++ ..+++++++|.+|+|||||+|+|+|.....++..+++|....... . +.
T Consensus 89 ~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~ 165 (282)
T 1puj_A 89 NGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--V-GK 165 (282)
T ss_dssp TCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE--E-TT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE--e-CC
Confidence 455777776666665555444333332 356899999999999999999999998777777776665443222 2 45
Q ss_pred eEEEEeCCCCCCCCCChHH
Q 026593 86 TLNIIDTPGLVEAGYVNYQ 104 (236)
Q Consensus 86 ~~~liDTPG~~d~~~~~~~ 104 (236)
.+.++||||+.+......+
T Consensus 166 ~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 166 ELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp TEEEEECCCCCCSCCCCHH
T ss_pred CEEEEECcCcCCCCCCCHH
Confidence 7899999999887655443
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.24 E-value=6.8e-11 Score=109.33 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=72.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc-----------cccC------cCcccceEEEEeeeCC-------eeEEEEe
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT-----------VNSF------QSEALRPVMVSRSKGG-------FTLNIID 91 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~-----------~~~~------~~~~~~~~~~~~~~~~-------~~~~liD 91 (236)
...+|+++|+.|+|||||+++|+...... ..++ .+.+.........+.+ ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45799999999999999999997432100 0010 1112222223445555 7899999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 92 TPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 92 TPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
|||+.++. .+..+.+ ..+|++|+|++... .........+..+... ..|+++|+||+|+..
T Consensus 89 TPG~~df~---~~~~~~l------~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 89 TPGHVDFT---IEVERSM------RVLDGAVMVYCAVG-GVQPQSETVWRQANKY-----KVPRIAFVNKMDRMG 148 (704)
T ss_pred CCCccchH---HHHHHHH------HHCCEEEEEEeCCC-CCcHHHHHHHHHHHHc-----CCCEEEEEeCCCccc
Confidence 99997653 2222223 37899999966543 2333334444443322 289999999999863
No 182
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.22 E-value=2.9e-11 Score=113.83 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=72.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccC---------------cCcccceEEEEeeeC----------------C
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSF---------------QSEALRPVMVSRSKG----------------G 84 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~----------------~ 84 (236)
...+|+++|++|+|||||+++|++......... .+.|.........+. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 457999999999999999999986532111100 011111111222222 5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCC
Q 026593 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 164 (236)
..+.||||||+.++.. +....+ ..+|++++|++... ..+......+..+... ..|+++|+||+|+
T Consensus 98 ~~i~liDTPG~~df~~---~~~~~l------~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~-----~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS---EVTAAL------RVTDGALVVVDTIE-GVCVQTETVLRQALGE-----RIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSSCH---HHHHHH------HTCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCEEEEEEECHHH
T ss_pred ceEEEEECcCchhhHH---HHHHHH------HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCeEEEEECCCc
Confidence 6899999999987643 333333 38999999977643 2444444444443322 2789999999998
Q ss_pred C
Q 026593 165 C 165 (236)
Q Consensus 165 ~ 165 (236)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 5
No 183
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.22 E-value=1.9e-10 Score=109.86 Aligned_cols=118 Identities=11% Similarity=0.088 Sum_probs=73.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhCCCccc----------cc-----cCcCcccceEEEEeeeCCeeEEEEeCCCCCC
Q 026593 33 ENVNTLTILVMGKGGVGKSSTVNSVIGERVVT----------VN-----SFQSEALRPVMVSRSKGGFTLNIIDTPGLVE 97 (236)
Q Consensus 33 ~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d 97 (236)
..++.++|+++|++++|||||+++|++..... .. ...+.|...........+..+.+|||||+.+
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998641000 00 0011111111223344678899999999843
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCc-EEEEEeCCCCC
Q 026593 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVLTHAQLC 165 (236)
Q Consensus 98 ~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivv~tk~D~~ 165 (236)
+...+...+ ..+|++++|++.+.. ...+..+++..+... + .| +++++||+|+.
T Consensus 372 -------F~~~mi~ga--s~AD~aILVVDAtdG-v~~QTrEhL~ll~~l-g----IP~IIVVINKiDLv 425 (1289)
T 3avx_A 372 -------YVKNMITGA--AQMDGAILVVAATDG-PMPQTREHILLGRQV-G----VPYIIVFLNKCDMV 425 (1289)
T ss_dssp -------HHHHHHHTS--CCCSEEEEEEETTTC-SCTTHHHHHHHHHHH-T----CSCEEEEEECCTTC
T ss_pred -------HHHHHHHHH--hhCCEEEEEEcCCcc-CcHHHHHHHHHHHHc-C----CCeEEEEEeecccc
Confidence 223333222 589999999777542 334455555555432 2 55 89999999996
No 184
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.19 E-value=4e-11 Score=108.59 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=65.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcccc--------ccC------cCcccceEEEEeee---CC--eeEEEEeCCCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTV--------NSF------QSEALRPVMVSRSK---GG--FTLNIIDTPGLVE 97 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~--------~~~------~~~~~~~~~~~~~~---~~--~~~~liDTPG~~d 97 (236)
-.+|+++|+.++|||||+++|++...... .+. .+.+.........| ++ ..+.+|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 46899999999999999999985321110 000 11111111122222 22 5788999999976
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 98 ~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+. .+..+.+ ..+|++++|++... ..+......+...... ..|+++|+||+|+.
T Consensus 86 F~---~ev~r~l------~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 86 FS---YEVSRAL------AACEGALLLIDASQ-GIEAQTVANFWKAVEQ-----DLVIIPVINKIDLP 138 (600)
T ss_dssp GH---HHHHHHH------HTCSEEEEEEETTT-BCCHHHHHHHHHHHHT-----TCEEEEEEECTTST
T ss_pred HH---HHHHHHH------HhCCEEEEEEECCC-CccHHHHHHHHHHHHC-----CCCEEEEEeccCcc
Confidence 42 2222222 37899999977643 2444444433333321 27899999999985
No 185
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.19 E-value=2.9e-11 Score=109.57 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=63.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccc--------cC------cCcccceEEEEeeeC-----CeeEEEEeCCCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVN--------SF------QSEALRPVMVSRSKG-----GFTLNIIDTPGLVE 97 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~--------~~------~~~~~~~~~~~~~~~-----~~~~~liDTPG~~d 97 (236)
-.+|+++|+.++|||||+++|+........ +. .+.+.........|. +..+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 468999999999999999999853211110 00 111222222333332 25789999999966
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 98 AGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 98 ~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
+. .+..+.+ ..+|++++|++... ..+......+...... ..|+++|+||+|+.+
T Consensus 84 F~---~ev~~~l------~~aD~aILVVDa~~-gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 84 FS---YEVSRSL------AACEGALLVVDAGQ-GVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPA 137 (599)
T ss_dssp GH---HHHHHHH------HHCSEEEEEEETTT-CCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTT
T ss_pred HH---HHHHHHH------HHCCEEEEEEECCC-CCCHHHHHHHHHHHHC-----CCCEEEeeeccCccc
Confidence 42 2222222 26899999977643 2333334333333322 279999999999963
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.19 E-value=8.7e-11 Score=98.12 Aligned_cols=124 Identities=19% Similarity=0.244 Sum_probs=60.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCc------Ccccce--EEEEeeeC--CeeEEEEeCCCCCCCC------
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ------SEALRP--VMVSRSKG--GFTLNIIDTPGLVEAG------ 99 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~------~~~~~~--~~~~~~~~--~~~~~liDTPG~~d~~------ 99 (236)
-.++|+++|++|+|||||+|.|+|......+..+ ..+... ........ ...+.+|||||+++..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4589999999999999999999987433322111 001111 11111212 2478999999995431
Q ss_pred -CChHHHH----HHHHHHH-------hcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 100 -YVNYQAL----ELIKGFL-------LNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 100 -~~~~~~~----~~i~~~l-------~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.....+. ..++... ....+++++|+.......+...+..+++.+. . ..++++|+||+|+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~---~---~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---N---KVNIVPVIAKADTL 168 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT---T---TSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH---h---cCCEEEEEEeCCCC
Confidence 1111111 1111111 1123566777743323247776654443332 1 26899999999986
No 187
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.18 E-value=1.9e-10 Score=94.57 Aligned_cols=123 Identities=22% Similarity=0.325 Sum_probs=70.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccc-------cCcCcccceEEEEe-eeCC--eeEEEEeCCCCCCCCCC---hH
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVN-------SFQSEALRPVMVSR-SKGG--FTLNIIDTPGLVEAGYV---NY 103 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~--~~~~liDTPG~~d~~~~---~~ 103 (236)
.++++++|++|+|||||+|.|+|......+ +.+........... ...+ ..++++|+||++..... ..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 378999999999999999999986432221 11111111111111 1111 26899999999764321 11
Q ss_pred HHHHHHH----HH----Hh--------cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 104 QALELIK----GF----LL--------NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 104 ~~~~~i~----~~----l~--------~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+...+. .. ++ ...+++.+|+.+-....++..+..+++.+.+. .++++|+||+|..
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~l 153 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccC
Confidence 2222221 11 11 12368888884433334888887777777653 7899999999986
No 188
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.17 E-value=2.5e-12 Score=110.43 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=74.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC-----CccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHH-HHHHH
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE-----RVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQA-LELIK 110 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~-~~~i~ 110 (236)
..+++++|.+|+|||||+|+|++. ....++..+++|........ +..+.++||||+.+.....+.. .+.+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 458999999999999999999987 44456667776655544432 2247999999998765322211 11222
Q ss_pred HHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCCC
Q 026593 111 GFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLCP 166 (236)
Q Consensus 111 ~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 166 (236)
.++....++.++|+.+....-+- .....++.+. ....|+++++||.|...
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~-g~l~~l~~l~-----~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFF-GGLARLDYIK-----GGRRSFVCYMANELTVH 288 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEE-TTTEEEEEEE-----SSSEEEEEEECTTSCEE
T ss_pred HHhcccccCceEEEEcCCceEEE-CCEEEEEEcc-----CCCceEEEEecCCcccc
Confidence 33333578999999543211111 0111121111 12278999999999863
No 189
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.17 E-value=3.2e-12 Score=109.69 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=70.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC------ccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHH-HHHHH
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGER------VVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQ-ALELI 109 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~-~~~~i 109 (236)
..+++++|.+|+|||||+|+|++.. ...++..+++|......... ..+.++||||+.+.....+. ..+.+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD---EESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS---SSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec---CCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 4689999999999999999999863 23345566666554444322 23899999999876532221 12233
Q ss_pred HHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 110 KGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 110 ~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..+.....++.++|+.+.+..-+- .....++.+. ....|+++++||.|..
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~-g~l~~~d~l~-----~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFF-SGLARFDYVS-----GGRRAFTCHFSNRLTI 286 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEE-TTTEEEEEEE-----SSSEEEEEEECTTSCE
T ss_pred HHhccccccCceEEEEcCCCEEEE-cceEEEEEec-----CCCceEEEEecCcccc
Confidence 333434678888888443211111 1111121111 1227899999999986
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.15 E-value=2.4e-10 Score=99.37 Aligned_cols=120 Identities=20% Similarity=0.222 Sum_probs=76.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-eeEEEEeCCCCCCCC----CChHHHHHHHHHH
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-FTLNIIDTPGLVEAG----YVNYQALELIKGF 112 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~liDTPG~~d~~----~~~~~~~~~i~~~ 112 (236)
-.|+|+|++|||||||+++|++... .....+..+..+......+.+ ..+.++||||+.+.. ......++.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~--- 233 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI--- 233 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH---
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH---
Confidence 3689999999999999999999864 334444455555555555554 789999999986531 1222222222
Q ss_pred HhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 113 LLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 113 l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
..++.+++++++. ...-..-..+.+.+......-...|.++|+||+|+.
T Consensus 234 ---era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 234 ---ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp ---TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred ---HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 4789999998775 121111122333443332111238999999999985
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.15 E-value=2.9e-10 Score=102.26 Aligned_cols=114 Identities=11% Similarity=0.162 Sum_probs=77.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCcc---------------ccccC------cCcccceEEEEeeeCCeeEEEEeCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVV---------------TVNSF------QSEALRPVMVSRSKGGFTLNIIDTPGL 95 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~---------------~~~~~------~~~~~~~~~~~~~~~~~~~~liDTPG~ 95 (236)
.-+|.++|+.++|||||..+|+-.... .+.++ .+.|.......+.|++..+.||||||.
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 359999999999999999998722110 11111 112333345667889999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 96 VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 96 ~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.|+.. +..+.++ -+|+.++|++... ....+....++...+.. .|.++++||+|..
T Consensus 111 vDF~~---Ev~raL~------~~DgAvlVvda~~-GV~~qT~~v~~~a~~~~-----lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 111 QDFSE---DTYRVLT------AVDSALVVIDAAK-GVEAQTRKLMDVCRMRA-----TPVMTFVNKMDRE 165 (548)
T ss_dssp GGCSH---HHHHHHH------SCSEEEEEEETTT-BSCHHHHHHHHHHHHTT-----CCEEEEEECTTSC
T ss_pred HHHHH---HHHHHHH------hcCceEEEeecCC-CcccccHHHHHHHHHhC-----CceEEEEecccch
Confidence 88753 4444443 7899999955432 26666566666666543 8999999999974
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.09 E-value=1.2e-10 Score=99.37 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=55.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-----------------eeEEEEeCCCCCCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVEAG 99 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDTPG~~d~~ 99 (236)
.++|+++|.+|+|||||+|+|++.. ..+.+++.+|..+......+.+ ..+.+|||||+....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 3689999999999999999999877 3455555555444333333333 469999999997642
Q ss_pred C----ChHHHHHHHHHHHhcCCCcEEEEEEeCCC
Q 026593 100 Y----VNYQALELIKGFLLNKTIDVLLYADRLDA 129 (236)
Q Consensus 100 ~----~~~~~~~~i~~~l~~~~~~~il~v~~~d~ 129 (236)
. ....++..+ ..+|++++|++...
T Consensus 81 ~~~~gl~~~fl~~i------r~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANI------RETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHH------HTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHH------HhcCeEEEEEecCC
Confidence 1 112233333 38999999987643
No 193
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.06 E-value=1.1e-09 Score=100.73 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=76.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccc-----------ccc------CcCcccceEEEEeeeCCeeEEEEeCCCCCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVT-----------VNS------FQSEALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~ 98 (236)
...+|+++|++|+|||||+++|++..... ..+ ....+.........+.+..+.+|||||+.++
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 45689999999999999999998432110 000 0122334445556677889999999998654
Q ss_pred CCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 99 GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 99 ~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
. ......+ ..+|++++|++... ........++..+... ..|+++++||+|+.
T Consensus 88 ~---~~~~~~l------~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 V---GEIRGAL------EAADAALVAVSAEA-GVQVGTERAWTVAERL-----GLPRMVVVTKLDKG 139 (665)
T ss_dssp H---HHHHHHH------HHCSEEEEEEETTT-CSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred H---HHHHHHH------hhcCcEEEEEcCCc-ccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence 2 2233333 26899999977532 3566556666666543 28999999999985
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.06 E-value=1.6e-10 Score=98.75 Aligned_cols=121 Identities=19% Similarity=0.225 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHh------CCCccccccCcCcccce-----------------EEEE
Q 026593 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQSEALRP-----------------VMVS 79 (236)
Q Consensus 23 ~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~------~~~~~~~~~~~~~~~~~-----------------~~~~ 79 (236)
..+.++.+........+|+++|.+|+|||||++.|+ |.++......+..+... ..+.
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i 144 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYI 144 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEE
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeE
Confidence 444555555545577899999999999999999986 33332222111111100 0000
Q ss_pred ----------------------eeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHH
Q 026593 80 ----------------------RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDR 137 (236)
Q Consensus 80 ----------------------~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~ 137 (236)
....+..++||||||+... ....+ ..+|++++|++..... . .
T Consensus 145 ~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~------~~~~~------~~aD~vl~V~d~~~~~--~-~- 208 (355)
T 3p32_A 145 RPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQS------EVAVA------NMVDTFVLLTLARTGD--Q-L- 208 (355)
T ss_dssp ECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH------HHHHH------TTCSEEEEEEESSTTC--T-T-
T ss_pred EECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH------HHHHH------HhCCEEEEEECCCCCc--c-H-
Confidence 1235678999999997531 11111 5899999996643211 1 1
Q ss_pred HHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 138 QIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 138 ~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.. +.... ...|+++|+||+|+.
T Consensus 209 ~~---l~~~~---~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 209 QG---IKKGV---LELADIVVVNKADGE 230 (355)
T ss_dssp TT---CCTTS---GGGCSEEEEECCCGG
T ss_pred HH---HHHhH---hhcCCEEEEECCCCc
Confidence 11 11110 115899999999985
No 195
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.04 E-value=5.2e-11 Score=97.08 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=31.1
Q ss_pred CCcEEEEEEeCCCC---CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 117 TIDVLLYADRLDAY---RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 117 ~~~~il~v~~~d~~---~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
++|++++|++++.. ++... ..++..+.+.... ...|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~-~~~l~~i~~~~~~-~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQ-LKFVSNLYNQLAK-TKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHH-HHHHHHHHHHHHH-TTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHH-HHHHHHHHHHhcc-CCCCEEEEEEccccc
Confidence 58999999888653 33222 3556666554211 138999999999985
No 196
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.03 E-value=1.3e-09 Score=94.67 Aligned_cols=122 Identities=17% Similarity=0.230 Sum_probs=65.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCCccccc--c-CcCcccceEEEEeeeCC--eeEEEEeCCCCCCCCCCh---HHH---
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGERVVTVN--S-FQSEALRPVMVSRSKGG--FTLNIIDTPGLVEAGYVN---YQA--- 105 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~~~~~~--~-~~~~~~~~~~~~~~~~~--~~~~liDTPG~~d~~~~~---~~~--- 105 (236)
.++++|+|++|+|||||+|.|+|..+.... . .+..+.....+.....+ ..++++|+||++...... ..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 356999999999999999999998532211 1 11111111111222222 268999999997642110 111
Q ss_pred -HHHHHHHHhc-------------CCCcEEEEEEeCCCC-CCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 106 -LELIKGFLLN-------------KTIDVLLYADRLDAY-RVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 106 -~~~i~~~l~~-------------~~~~~il~v~~~d~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
...+..++.. ..+|+++|++ .+.. .++..|..+++.|. . ..|+++|+||+|..
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI-~d~~~~l~~~Dieilk~L~----~--~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFI-APTGHSLKSLDLVTMKKLD----S--KVNIIPIIAKADAI 189 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEE-CCCC---CHHHHHHHHHTC----S--CSEEEEEESCGGGS
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEE-eCCCCCCCHHHHHHHHHHh----h--CCCEEEEEcchhcc
Confidence 1112222211 1234544442 3332 37788877766664 1 28999999999986
No 197
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.01 E-value=4.2e-10 Score=96.89 Aligned_cols=90 Identities=22% Similarity=0.233 Sum_probs=50.1
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-----------------eeEEEEeCCC
Q 026593 32 QENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPG 94 (236)
Q Consensus 32 ~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDTPG 94 (236)
..-...++|+++|.+|+|||||+|+|++... .++..+.+|..+......+.+ ..+.+|||||
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 3444678999999999999999999999875 555666666555444433332 3589999999
Q ss_pred CCCCCCCh----HHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026593 95 LVEAGYVN----YQALELIKGFLLNKTIDVLLYADRLD 128 (236)
Q Consensus 95 ~~d~~~~~----~~~~~~i~~~l~~~~~~~il~v~~~d 128 (236)
+....... ..+...+ ..+|++++|++..
T Consensus 96 l~~~as~~~glg~~~l~~i------r~aD~Il~VvD~~ 127 (396)
T 2ohf_A 96 LVKGAHNGQGLGNAFLSHI------SACDGIFHLTRAF 127 (396)
T ss_dssp -----------CCHHHHHH------HTSSSEEEEEEC-
T ss_pred cccccchhhHHHHHHHHHH------HhcCeEEEEEecC
Confidence 97644321 1233333 3899999997763
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.97 E-value=3.5e-09 Score=90.13 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
....|+++|.+|||||||+|+|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999999996
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.97 E-value=8.4e-10 Score=93.72 Aligned_cols=119 Identities=22% Similarity=0.280 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHh------CCCccccccCcCccc-------------------ceEEEE
Q 026593 25 ELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQSEAL-------------------RPVMVS 79 (236)
Q Consensus 25 ~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~------~~~~~~~~~~~~~~~-------------------~~~~~~ 79 (236)
..+..+.....+...|+++|++|+|||||+|.|+ |.++..+...+..+. ......
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~ 123 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRP 123 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeec
Confidence 3444444334466899999999999999999996 333332222221110 000000
Q ss_pred --------------------eeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHH
Q 026593 80 --------------------RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQI 139 (236)
Q Consensus 80 --------------------~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~ 139 (236)
..+.+..++||||||+.+.. .. + ...+|++++|++..... +.+.
T Consensus 124 ~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~---~~----~-----~~~aD~vl~Vvd~~~~~----~~~~ 187 (341)
T 2p67_A 124 VPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSE---TE----V-----ARMVDCFISLQIAGGGD----DLQG 187 (341)
T ss_dssp ECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HH----H-----HTTCSEEEEEECC----------CC
T ss_pred CccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchH---HH----H-----HHhCCEEEEEEeCCccH----HHHH
Confidence 01457789999999986431 11 1 15899999996543211 0111
Q ss_pred HHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 140 IKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 140 l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+.. ... ..|.++|+||+|+.
T Consensus 188 l~~--~~~----~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 188 IKK--GLM----EVADLIVINKDDGD 207 (341)
T ss_dssp CCH--HHH----HHCSEEEECCCCTT
T ss_pred HHH--hhh----cccCEEEEECCCCC
Confidence 110 001 15789999999985
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.94 E-value=2.1e-09 Score=91.96 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=57.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeee---------------------CCeeEEEEeCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSK---------------------GGFTLNIIDTPGLV 96 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~liDTPG~~ 96 (236)
++|+++|.+|+|||||+|+|++.. ..+..++.+|..+......+ .+..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999875 23444444444333322221 24579999999997
Q ss_pred CCCC----ChHHHHHHHHHHHhcCCCcEEEEEEeCCC
Q 026593 97 EAGY----VNYQALELIKGFLLNKTIDVLLYADRLDA 129 (236)
Q Consensus 97 d~~~----~~~~~~~~i~~~l~~~~~~~il~v~~~d~ 129 (236)
.... ....++..++ .+|++++|++...
T Consensus 81 ~~a~~~~~lg~~fl~~ir------~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIR------EVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHH------TCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHH------hCCEEEEEEECCC
Confidence 6532 2334444443 8999999977643
No 201
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.93 E-value=3e-09 Score=94.44 Aligned_cols=118 Identities=18% Similarity=0.150 Sum_probs=68.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCCccccccCcCccc-------------ceEEEE----------------e
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQSEAL-------------RPVMVS----------------R 80 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~------~~~~~~~~~~~~~~~-------------~~~~~~----------------~ 80 (236)
++..|+++|.+|+||||+++.|+ |.++..+...+.... .+.... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999 776544432110000 000010 0
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCc-EEEEE
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRK-SLLVL 159 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivv~ 159 (236)
.+.+..++||||||..... .....++........+|.+++|++.. .-.. .......+.+. .| ..+|+
T Consensus 180 ~~~~~DvvIIDTpG~~~~~---~~l~~el~~~~~~i~pd~vllVvDa~--~g~~-~~~~a~~~~~~------~~i~gvVl 247 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQE---DSLFEEMLQVANAIQPDNIVYVMDAS--IGQA-CEAQAKAFKDK------VDVASVIV 247 (504)
T ss_dssp HHTTCCEEEEEECCCCTTC---HHHHHHHHHHHHHHCCSEEEEEEETT--CCTT-HHHHHHHHHHH------HCCCCEEE
T ss_pred HHCCCcEEEEeCCCCcccc---hhHHHHHHHHHhhhcCceEEEEEecc--cccc-HHHHHHHHHhh------cCceEEEE
Confidence 1256789999999986532 22222332222112789999995543 2111 23333333332 45 48999
Q ss_pred eCCCCC
Q 026593 160 THAQLC 165 (236)
Q Consensus 160 tk~D~~ 165 (236)
||+|..
T Consensus 248 NK~D~~ 253 (504)
T 2j37_W 248 TKLDGH 253 (504)
T ss_dssp ECTTSC
T ss_pred eCCccc
Confidence 999986
No 202
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=1.8e-09 Score=93.08 Aligned_cols=88 Identities=17% Similarity=0.222 Sum_probs=65.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCC-----------------eeEEEEeCCCCCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGG-----------------FTLNIIDTPGLVE 97 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDTPG~~d 97 (236)
....++.++|++|+|||||+|+|+|.....++.++.++..+......+.+ ..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 35689999999999999999999998765667777777666655555554 3579999999876
Q ss_pred CCCC----hHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 026593 98 AGYV----NYQALELIKGFLLNKTIDVLLYADRLD 128 (236)
Q Consensus 98 ~~~~----~~~~~~~i~~~l~~~~~~~il~v~~~d 128 (236)
.... ...+...+ ..+|++++|++..
T Consensus 98 ~~s~~e~L~~~fl~~i------r~~d~il~Vvd~~ 126 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHV------RAVDAIYQVVRAF 126 (392)
T ss_dssp CCCSSSSSCHHHHHHH------TTCSEEEEEEECC
T ss_pred CCcHHHHHHHHHHHHH------HHHHHHHHHHhcc
Confidence 4332 22344433 4899999997763
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.90 E-value=1.7e-08 Score=93.59 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=72.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcc-----------ccccCc------CcccceEEEEeee-------CCeeEEEEeCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVV-----------TVNSFQ------SEALRPVMVSRSK-------GGFTLNIIDTP 93 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~-----------~~~~~~------~~~~~~~~~~~~~-------~~~~~~liDTP 93 (236)
-+|.++|+.++|||||..+|+-.... ...++. +.|......+..| ++..+.|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 48999999999999999998733211 011111 1122222233333 35689999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 94 GLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 94 G~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
|..|+. .+..+.++ -+|+.|+|++... ....+....+++..+.. .|.++++||+|..
T Consensus 94 GHvDF~---~Ev~~aLr------~~DgavlvVDave-GV~~qT~~v~~~a~~~~-----lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 94 GHVDFT---IEVERSLR------VLDGAVVVFCGTS-GVEPQSETVWRQANKYG-----VPRIVYVNKMDRQ 150 (709)
T ss_dssp SCTTCH---HHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHHT-----CCEEEEEECSSST
T ss_pred CCcccH---HHHHHHHH------HhCeEEEEEECCC-CCchhHHHHHHHHHHcC-----CCeEEEEcccccc
Confidence 998874 34444443 6799999955421 36666666666666654 8999999999974
No 204
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.89 E-value=3.8e-09 Score=95.33 Aligned_cols=68 Identities=24% Similarity=0.235 Sum_probs=45.7
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhCCCccc-cccCc-CcccceEEEEe---eeCCeeEEEEeCCCCCCCC
Q 026593 32 QENVNTLTILVMGKGGVGKSSTVNSVIGERVVT-VNSFQ-SEALRPVMVSR---SKGGFTLNIIDTPGLVEAG 99 (236)
Q Consensus 32 ~~~~~~~~IllvG~~g~GKSSlin~l~~~~~~~-~~~~~-~~~~~~~~~~~---~~~~~~~~liDTPG~~d~~ 99 (236)
....+..+|+++|.+|+|||||+|+|+|..... +.... +.|.....+.. ...+..+.++||||+.+..
T Consensus 33 ~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 33 AITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp TCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred hccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 344466899999999999999999999987432 21111 22222222211 2356789999999998754
No 205
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.87 E-value=1.2e-09 Score=89.38 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=40.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcCcccceEEEEeeeCCeeEEEEeCCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~ 100 (236)
++++++|.+|+|||||+|+|++.....++..++.|....... -+..+.+|||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS---LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE---CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE---eCCCEEEEECCCcccCcC
Confidence 699999999999999999999988666666665554433222 234789999999987765
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.87 E-value=1.2e-09 Score=100.02 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=76.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCcc-----------ccccCc------CcccceEEEEeeeCCeeEEEEeCCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVV-----------TVNSFQ------SEALRPVMVSRSKGGFTLNIIDTPGLVEAGY 100 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~-----------~~~~~~------~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~ 100 (236)
-+|.++|+.++|||||..+|+..... ...++. +.|.......+.|++..++||||||..|+.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 37899999999999999998722110 111111 123333445667889999999999998763
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 101 VNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 101 ~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.+..+.+ .-+|+.++|++... ....+....++...+.. .|.++++||+|..
T Consensus 82 --~Ev~raL------~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~~-----lp~i~~INKmDr~ 132 (638)
T 3j25_A 82 --AEVYRSL------SVLDGAILLISAKD-GVQAQTRILFHALRKMG-----IPTIFFINKIDQN 132 (638)
T ss_dssp --HHHHHHH------TTCSEEECCEESSC-TTCSHHHHHHHHHHHHT-----CSCEECCEECCSS
T ss_pred --HHHHHHH------HHhCEEEEEEeCCC-CCcHHHHHHHHHHHHcC-----CCeEEEEeccccc
Confidence 2333333 37899999955432 25555566666666553 7889999999975
No 207
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.82 E-value=1e-08 Score=81.01 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=31.0
Q ss_pred ccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 13 QQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
++...........+.+.+... ...+|+++|.+|+|||||+++|++.
T Consensus 8 ~~~l~~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 8 QDLLAENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp ---CHHHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhhcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 444455555555555544432 4579999999999999999999864
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.79 E-value=8.5e-09 Score=87.35 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 026593 25 ELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 25 ~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~ 58 (236)
..++.+.-.-.+...+.++|++|+|||||+|.|+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3445554334466789999999999999999998
No 209
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.73 E-value=1.2e-08 Score=82.90 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=26.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh-----CCCccccc
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVI-----GERVVTVN 66 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~-----~~~~~~~~ 66 (236)
++....++++|+.|+||||+++.|. |.++..+.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3456789999999999999999998 77665544
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.70 E-value=8.3e-08 Score=83.22 Aligned_cols=117 Identities=21% Similarity=0.204 Sum_probs=67.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCCccccccCc----CcccceEEEEeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHH
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQ----SEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKG 111 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~ 111 (236)
....+.++|++|+|||||+|.|+|.......... ..+.....+... ....++++|+||+........+++..+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~- 145 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMK- 145 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTT-
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcC-
Confidence 5568999999999999999999995321111111 111112222221 1126899999998644332233333221
Q ss_pred HHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 112 FLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 112 ~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+ ...+.+++ ++. .+....+..+...+.... .|+++|+||.|..
T Consensus 146 -L--~~~~~~~~-lS~--G~~~kqrv~la~aL~~~~-----~p~~lV~tkpdll 188 (413)
T 1tq4_A 146 -F--YEYDFFII-ISA--TRFKKNDIDIAKAISMMK-----KEFYFVRTKVDSD 188 (413)
T ss_dssp -G--GGCSEEEE-EES--SCCCHHHHHHHHHHHHTT-----CEEEEEECCHHHH
T ss_pred -C--CccCCeEE-eCC--CCccHHHHHHHHHHHhcC-----CCeEEEEecCccc
Confidence 1 23355554 333 235566666666666532 7999999999763
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.68 E-value=8.3e-08 Score=83.71 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=68.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCCccccccCcCcc------------cceEEEEe-----------------
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQSEA------------LRPVMVSR----------------- 80 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~------~~~~~~~~~~~~~~------------~~~~~~~~----------------- 80 (236)
++..|+++|.+|+||||+++.|. |.++..+...+... .....+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 36789999999999999998887 45443322111000 00001100
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEe
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 160 (236)
...+.+++||||||.... +.....+++.......+|.+++|.+ +.. ........+.+.+.. ....+|+|
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~~pd~vlLVvD--A~~-gq~a~~~a~~f~~~~-----~i~gVIlT 247 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVIHPHEVILVID--GTI-GQQAYNQALAFKEAT-----PIGSIIVT 247 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEE--GGG-GGGHHHHHHHHHHSC-----TTEEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhhcCceEEEEEe--CCC-chhHHHHHHHHHhhC-----CCeEEEEE
Confidence 013478999999997543 3344455554444457899999944 322 122223333333322 56789999
Q ss_pred CCCCC
Q 026593 161 HAQLC 165 (236)
Q Consensus 161 k~D~~ 165 (236)
|+|..
T Consensus 248 KlD~~ 252 (443)
T 3dm5_A 248 KLDGS 252 (443)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 99975
No 212
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.62 E-value=4.9e-07 Score=82.34 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCC----CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 22 KLIELLSKLKQENV----NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 22 ~~~~~~~~~~~~~~----~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.+.+..++..+. .-..++|+|++|||||||++.|+|..
T Consensus 26 ~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 26 PCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp HHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCC
Confidence 34556666665543 22469999999999999999999974
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.49 E-value=1.5e-07 Score=82.10 Aligned_cols=117 Identities=18% Similarity=0.110 Sum_probs=66.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC------CccccccCcC------------------------cccceE----EEEeee
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE------RVVTVNSFQS------------------------EALRPV----MVSRSK 82 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~------~~~~~~~~~~------------------------~~~~~~----~~~~~~ 82 (236)
+..|+++|++|+||||+++.|.+. ++..+...+. .+..+. ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998853 2222211100 000000 000012
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccC-c-EEEEEe
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWR-K-SLLVLT 160 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~-~-~ivv~t 160 (236)
.+..++|+||||... .+......+........+|.+++|.+.. .- . ..+.... .+... . + ..+|+|
T Consensus 179 ~~~D~vIIDT~G~~~---~~~~l~~~l~~i~~~~~~d~vllVvda~--~g-~---~~~~~~~-~~~~~--~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHK---EEKGLLEEMKQIKEITNPDEIILVIDGT--IG-Q---QAGIQAK-AFKEA--VGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCS---SHHHHHHHHHHTTSSSCCSEEEEEEEGG--GG-G---GHHHHHH-HHHTT--SCSCEEEEEE
T ss_pred hCCCEEEEcCCCCcc---ccHHHHHHHHHHHHHhcCcceeEEeecc--cc-H---HHHHHHH-HHhhc--ccCCeEEEEe
Confidence 566899999999854 2334455554433334789999995432 21 1 1222222 22221 3 4 899999
Q ss_pred CCCCC
Q 026593 161 HAQLC 165 (236)
Q Consensus 161 k~D~~ 165 (236)
|+|..
T Consensus 247 K~D~~ 251 (432)
T 2v3c_C 247 KLDGS 251 (432)
T ss_dssp CSSSC
T ss_pred CCCCc
Confidence 99985
No 214
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.49 E-value=6.8e-08 Score=82.49 Aligned_cols=76 Identities=8% Similarity=0.126 Sum_probs=42.1
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC--C-----ChHHHHHHHHHHHhhCc--cc
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR--V-----DDLDRQIIKAVTGTFGK--QI 151 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~--~-----~~~~~~~l~~l~~~~~~--~~ 151 (236)
.+++..+.+|||+|+........ .|. .+++++|||++++... + ...-.....++...... ..
T Consensus 197 ~~~~~~l~i~Dt~Gq~~~r~~w~-------~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 197 EIKNVPFKMVDVGGQRSERKRWF-------ECF--DSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp EETTEEEEEEEECC-------CT-------TSC--TTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eeCCeEEEEEeccchhhhhhhHH-------HHh--CCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 45677899999999854432211 112 5899999998886521 0 01112223333333221 12
Q ss_pred cCcEEEEEeCCCCC
Q 026593 152 WRKSLLVLTHAQLC 165 (236)
Q Consensus 152 ~~~~ivv~tk~D~~ 165 (236)
..|+++++||+|+.
T Consensus 268 ~~piILv~NK~DL~ 281 (362)
T 1zcb_A 268 NVSIILFLNKTDLL 281 (362)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCCEEEEEEChhhh
Confidence 37999999999985
No 215
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.43 E-value=5.5e-07 Score=76.62 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=46.7
Q ss_pred eeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCC-------ChHHHHHHHHHHHhhCc--c
Q 026593 80 RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRV-------DDLDRQIIKAVTGTFGK--Q 150 (236)
Q Consensus 80 ~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~-------~~~~~~~l~~l~~~~~~--~ 150 (236)
..+++..+.+|||+|+........ .| ..++++||||++++...- ...-..+..++...... .
T Consensus 188 ~~~~~~~l~iwDt~GQe~~r~~w~-------~y--f~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 188 FTFKDLHFKMFDVGGQRSERKKWI-------HC--FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp EEETTEEEEEEEECCSGGGGGGGG-------GG--CTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred EeeCCeeEEEEeCCCchhhhHHHH-------HH--HhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 345677899999999864432221 12 258999999988764210 11112333344433321 1
Q ss_pred ccCcEEEEEeCCCCC
Q 026593 151 IWRKSLLVLTHAQLC 165 (236)
Q Consensus 151 ~~~~~ivv~tk~D~~ 165 (236)
...|+++++||+|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 238999999999984
No 216
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.40 E-value=8e-07 Score=77.43 Aligned_cols=121 Identities=18% Similarity=0.118 Sum_probs=66.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------CCCccccccCcC-------------cccceEEE----------------Ee
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQS-------------EALRPVMV----------------SR 80 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~------~~~~~~~~~~~~-------------~~~~~~~~----------------~~ 80 (236)
++..|+++|++|+||||+++.|. |.++..+..... ....+... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35789999999999999999887 444322210000 00000000 00
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEe
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 160 (236)
...+..++++||||..... .+.....++........++.+++|.+ +..- .......+.+.+.. .+..+|+|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlD--a~~g-q~a~~~a~~f~~~~-----~~~gVIlT 246 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVID--ASIG-QKAYDLASRFHQAS-----PIGSVIIT 246 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEE--GGGG-GGGHHHHHHHHHHC-----SSEEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEe--Cccc-hHHHHHHHHHhccc-----CCcEEEEe
Confidence 1135689999999975411 12233444444333336789999944 3221 22233334444433 56889999
Q ss_pred CCCCC
Q 026593 161 HAQLC 165 (236)
Q Consensus 161 k~D~~ 165 (236)
|+|..
T Consensus 247 KlD~~ 251 (433)
T 3kl4_A 247 KMDGT 251 (433)
T ss_dssp CGGGC
T ss_pred ccccc
Confidence 99964
No 217
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.39 E-value=2.4e-06 Score=72.12 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=45.3
Q ss_pred EeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCC-------CCChHHHHHHHHHHHhhCc--
Q 026593 79 SRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAY-------RVDDLDRQIIKAVTGTFGK-- 149 (236)
Q Consensus 79 ~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~-------~~~~~~~~~l~~l~~~~~~-- 149 (236)
.....+..+.+|||+|+. ........|. .++++++||+++... .-...-..++.++......
T Consensus 155 ~~~~~~v~l~iwDtaGQe-------~~R~~w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 155 DFVVKDIPFHLIDVGGQR-------SERKXWVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp EEESSSCEEEEEECCSCH-------HHHHHHHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred EEEeeeeeeccccCCCcc-------cccccHHHHh--ccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 344567789999999982 2222222233 689999999887511 0011112233333333221
Q ss_pred cccCcEEEEEeCCCCC
Q 026593 150 QIWRKSLLVLTHAQLC 165 (236)
Q Consensus 150 ~~~~~~ivv~tk~D~~ 165 (236)
....|+++++||+|+.
T Consensus 226 ~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLF 241 (340)
T ss_dssp GTTSEEEEEEECHHHH
T ss_pred cCCCeEEEEEECchhh
Confidence 1237999999999984
No 218
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.38 E-value=1e-06 Score=74.05 Aligned_cols=77 Identities=8% Similarity=0.019 Sum_probs=46.3
Q ss_pred EeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCC--------CCCCChHHHHHHHHHHHhhCcc
Q 026593 79 SRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLD--------AYRVDDLDRQIIKAVTGTFGKQ 150 (236)
Q Consensus 79 ~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d--------~~~~~~~~~~~l~~l~~~~~~~ 150 (236)
.....+..+.+|||.|+...+.. ...| ..++++++||+++. ..... .-..++.++.......
T Consensus 161 ~~~~~~v~l~iwDtgGQe~~R~~-------w~~y--f~~~~~iIfV~dls~ydq~l~d~~~~n-r~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 161 PFDLQSVIFRMVDVGGQRSERRK-------WIHC--FENVTSIMFLVALSEYDQVLVESDNEN-RMEESKALFRTIITYP 230 (327)
T ss_dssp EEEETTEEEEEEEECCSHHHHTT-------GGGG--CSSCSEEEEEEEGGGGGCBCSSCTTSB-HHHHHHHHHHHHHTSG
T ss_pred EEEeeceeeEEEEcCCchhHHHH-------HHHH--hCCCCEEEEEEECccccccccccccHh-HHHHHHHHHHHHhhhh
Confidence 44557788999999998322111 1122 25899999998663 21221 1123444444443321
Q ss_pred --ccCcEEEEEeCCCCC
Q 026593 151 --IWRKSLLVLTHAQLC 165 (236)
Q Consensus 151 --~~~~~ivv~tk~D~~ 165 (236)
...|+++++||+|+.
T Consensus 231 ~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLL 247 (327)
T ss_dssp GGTTCEEEEEEECHHHH
T ss_pred ccCCceEEEEEECchhh
Confidence 237999999999985
No 219
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.22 E-value=2.1e-06 Score=74.95 Aligned_cols=119 Identities=17% Similarity=0.154 Sum_probs=65.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh-------CCCccccccCcCcc--c----------ceEEE-----------------E
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI-------GERVVTVNSFQSEA--L----------RPVMV-----------------S 79 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~-------~~~~~~~~~~~~~~--~----------~~~~~-----------------~ 79 (236)
++..|+++|.+|+||||++..|. |.++..+...+... . ..... .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999998887 66543332211100 0 00000 0
Q ss_pred eeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEE
Q 026593 80 RSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVL 159 (236)
Q Consensus 80 ~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~ 159 (236)
....+.+++||||||..... ......+........++.+++|.+.. .-... ....+.+.... ...-+|+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~---~~l~~~L~~~~~~~~p~~vllVvda~--~g~~~-~~~~~~f~~~l-----~i~gvVl 247 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVD---EAMMDEIKQVHASINPVETLFVVDAM--TGQDA-ANTAKAFNEAL-----PLTGVVL 247 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTC---HHHHHHHHHHHHHSCCSEEEEEEETT--BCTTH-HHHHHHHHHHS-----CCCCEEE
T ss_pred HHhCCCCEEEEECCCccccc---HHHHHHHHHHHHhhcCcceeEEeecc--hhHHH-HHHHHHHhccC-----CCeEEEE
Confidence 01146689999999975432 23333333322234789999985543 22221 22222222211 2246799
Q ss_pred eCCCCC
Q 026593 160 THAQLC 165 (236)
Q Consensus 160 tk~D~~ 165 (236)
||+|..
T Consensus 248 nK~D~~ 253 (433)
T 2xxa_A 248 TKVDGD 253 (433)
T ss_dssp ECTTSS
T ss_pred ecCCCC
Confidence 999974
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.17 E-value=1.1e-05 Score=66.90 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=63.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------CCCccccccCcCcc--c-----------ceEEE----------------Eee
Q 026593 37 TLTILVMGKGGVGKSSTVNSVI------GERVVTVNSFQSEA--L-----------RPVMV----------------SRS 81 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~------~~~~~~~~~~~~~~--~-----------~~~~~----------------~~~ 81 (236)
+-.++++|++|+||||+++.|. |.++.......... . ..... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999998887 44332222110000 0 00000 001
Q ss_pred eCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeC
Q 026593 82 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTH 161 (236)
Q Consensus 82 ~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk 161 (236)
..+..++++||||.... ...+....+++.......+|.+++|.+.. .- .......+.+.+ . .....+|+||
T Consensus 178 ~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~~~~~d~vllVvda~--~g-~~~~~~~~~~~~----~-~~i~gvVlnk 248 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYEAIKPDEVTLVIDAS--IG-QKAYDLASKFNQ----A-SKIGTIIITK 248 (297)
T ss_dssp HTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHHHHCCSEEEEEEEGG--GG-GGHHHHHHHHHH----T-CTTEEEEEEC
T ss_pred hCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHHHhcCCEEEEEeeCC--ch-HHHHHHHHHHHh----h-CCCCEEEEeC
Confidence 15668999999998651 12223333333222223789999995543 21 112222232222 1 1347899999
Q ss_pred CCCC
Q 026593 162 AQLC 165 (236)
Q Consensus 162 ~D~~ 165 (236)
+|..
T Consensus 249 ~D~~ 252 (297)
T 1j8m_F 249 MDGT 252 (297)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 9974
No 221
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.13 E-value=4.6e-06 Score=72.90 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=56.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC---------------CccccccCcCcccceEEEEeee---------C--CeeEEE
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE---------------RVVTVNSFQSEALRPVMVSRSK---------G--GFTLNI 89 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~---------------~~~~~~~~~~~~~~~~~~~~~~---------~--~~~~~l 89 (236)
+-.-|.|+|++++|||+|+|.|+|. .....+ ..+++..+......+ . ...+++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 4467889999999999999999864 111111 111222222222112 1 246999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHH
Q 026593 90 IDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTG 145 (236)
Q Consensus 90 iDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~ 145 (236)
+||||+.+.... .+.-..+- .+..--.+++||- +.. .++..+...+..+.+
T Consensus 145 lDTeG~~~~~~~-~~~d~~if-al~~lLSs~~IyN--~~~-~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 145 MDTQGTFDSQST-LRDSATVF-ALSTMISSIQVYN--LSQ-NVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEEECCCSSHHH-HHHHHHHH-HHHHHHCSEEEEE--ESS-SCCHHHHHHHHHHHH
T ss_pred EcCCcccccccc-hhhhHHHH-HHHHHHhhHHHHh--hcc-cccHHHHHHHHHHHH
Confidence 999999876431 11111111 1111125666666 322 466777766665554
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.06 E-value=1.3e-05 Score=67.52 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=64.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC------Cccccc-cCc-Ccc---------cce--EEEEe----------------
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE------RVVTVN-SFQ-SEA---------LRP--VMVSR---------------- 80 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~------~~~~~~-~~~-~~~---------~~~--~~~~~---------------- 80 (236)
++-.++++|++|+||||+++.|.+. ++.... +.. ... ... .....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 4678999999999999999998854 211111 000 000 000 00000
Q ss_pred eeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEe
Q 026593 81 SKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLT 160 (236)
Q Consensus 81 ~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 160 (236)
...+..+.++||+|........-..+..+.+.+ .+|-.+++.+ ...- ..-...++.+.+.. ....+++|
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral---~~de~llvLD--a~t~-~~~~~~~~~~~~~~-----~it~iilT 276 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVT---KPNLVIFVGD--ALAG-NAIVEQARQFNEAV-----KIDGIILT 276 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHH---CCSEEEEEEE--GGGT-THHHHHHHHHHHHS-----CCCEEEEE
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHh---cCCCCEEEEe--cHHH-HHHHHHHHHHHHhc-----CCCEEEEe
Confidence 012456789999998654433333333343333 5788888844 3221 12223333333332 45689999
Q ss_pred CCCCC
Q 026593 161 HAQLC 165 (236)
Q Consensus 161 k~D~~ 165 (236)
|.|..
T Consensus 277 KlD~~ 281 (328)
T 3e70_C 277 KLDAD 281 (328)
T ss_dssp CGGGC
T ss_pred CcCCc
Confidence 99974
No 223
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.96 E-value=7.5e-05 Score=62.09 Aligned_cols=121 Identities=19% Similarity=0.218 Sum_probs=63.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC------Ccccccc-C-cCc-----------ccceEEEEe----------------e
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE------RVVTVNS-F-QSE-----------ALRPVMVSR----------------S 81 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~------~~~~~~~-~-~~~-----------~~~~~~~~~----------------~ 81 (236)
+-.++++|++||||||+++.|.+. .+..... . ... ......... .
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 458899999999999999998843 1111110 0 000 000011100 0
Q ss_pred eCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHh---cCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEE
Q 026593 82 KGGFTLNIIDTPGLVEAGYVNYQALELIKGFLL---NKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLV 158 (236)
Q Consensus 82 ~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~---~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv 158 (236)
..+..+.++||+|..+.....-.-++..+..+. ...|+.++++ +|...- ......+..+.+.. ...+++
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLv--LDa~t~-~~~~~~~~~~~~~~-----~~t~ii 253 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLV--LDAVTG-QNGLEQAKKFHEAV-----GLTGVI 253 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEE--EETTBC-THHHHHHHHHHHHH-----CCSEEE
T ss_pred hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEE--EcHHHH-HHHHHHHHHHHHHc-----CCcEEE
Confidence 123457899999985543211112222232221 2468878888 443222 22233444444433 457899
Q ss_pred EeCCCCC
Q 026593 159 LTHAQLC 165 (236)
Q Consensus 159 ~tk~D~~ 165 (236)
+||.|..
T Consensus 254 vTh~d~~ 260 (304)
T 1rj9_A 254 VTKLDGT 260 (304)
T ss_dssp EECTTSS
T ss_pred EECCccc
Confidence 9999875
No 224
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.92 E-value=5.3e-05 Score=66.82 Aligned_cols=24 Identities=33% Similarity=0.684 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.-.++|+|.+|+|||||++.|.|.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 457899999999999999998853
No 225
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.83 E-value=6.6e-06 Score=68.52 Aligned_cols=58 Identities=26% Similarity=0.313 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcC-------cccceEEEEeeeCCeeEEEEeCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~liDTPG~~d~~ 99 (236)
-.++++|++|+|||||+|.|+|.....++.... .+..... .... ...++||||+....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFSSLE 238 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEET--TEEEESSCSCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhcC--CEEEecCCCccccc
Confidence 488999999999999999999875433333221 1111111 1111 34789999986543
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.78 E-value=2.6e-05 Score=67.79 Aligned_cols=72 Identities=15% Similarity=0.053 Sum_probs=39.2
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
.+.+++|+||||.... +.....++........++.+++|.+.. .-... ....+.+.+.. ...-+|+||.
T Consensus 179 ~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~--tgq~a-v~~a~~f~~~l-----~i~GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--TGQEA-LSVARAFDEKV-----GVTGLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--GTTHH-HHHHHHHHHHT-----CCCEEEEESG
T ss_pred CCCCEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEecc--chHHH-HHHHHHHHhcC-----CceEEEEeCc
Confidence 4567999999997544 223333333222222688888985432 22211 22222222221 4467899999
Q ss_pred CCC
Q 026593 163 QLC 165 (236)
Q Consensus 163 D~~ 165 (236)
|..
T Consensus 248 D~~ 250 (425)
T 2ffh_A 248 DGD 250 (425)
T ss_dssp GGC
T ss_pred CCc
Confidence 874
No 227
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.75 E-value=6.2e-05 Score=62.35 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=61.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC-------CccccccCcC--ccc-----------ceEEEE----------eeeCCe
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE-------RVVTVNSFQS--EAL-----------RPVMVS----------RSKGGF 85 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~-------~~~~~~~~~~--~~~-----------~~~~~~----------~~~~~~ 85 (236)
++-.++++|++|+||||++..|.+. ++......+. ... .+.... ....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 3458999999999999999887632 2211111000 000 000000 012455
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 86 ~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
.++|+||||.... ....+..+...+....++.+++|.+.. . . ...+..+.+.+.. ....-+|+||.|..
T Consensus 184 dlvIiDT~G~~~~---~~~~~~el~~~l~~~~~~~~~lVl~at--~-~---~~~~~~~~~~~~~--l~~~giVltk~D~~ 252 (296)
T 2px0_A 184 DHVFVDTAGRNFK---DPQYIDELKETIPFESSIQSFLVLSAT--A-K---YEDMKHIVKRFSS--VPVNQYIFTKIDET 252 (296)
T ss_dssp SEEEEECCCCCTT---SHHHHHHHHHHSCCCTTEEEEEEEETT--B-C---HHHHHHHTTTTSS--SCCCEEEEECTTTC
T ss_pred CEEEEeCCCCChh---hHHHHHHHHHHHhhcCCCeEEEEEECC--C-C---HHHHHHHHHHHhc--CCCCEEEEeCCCcc
Confidence 7999999998533 223333343333223467777884322 1 1 1223333344431 24456788999975
No 228
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.67 E-value=4.9e-05 Score=63.14 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=34.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcC-------cccceEEEEeeeCCeeEEEEeCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEA 98 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~liDTPG~~d~ 98 (236)
-.++++|++|+|||||+|.|+ ......+.... .+.... ..... ....++||||+...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~~-~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPFG-KGSFVGDTPGFSKV 229 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEET-TTEEEESSCCCSSC
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEcC-CCcEEEECcCcCcC
Confidence 478999999999999999999 54333332221 111111 11111 23468999998643
No 229
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.65 E-value=3.5e-05 Score=64.19 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+-.|+++|++|+||||++..|.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34789999999999999988774
No 230
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.64 E-value=0.00015 Score=60.79 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=19.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+-.|+++|++|+||||++..|.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999887763
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.58 E-value=4.4e-05 Score=64.81 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Q 026593 39 TILVMGKGGVGKSSTVNSVIGERV 62 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~~ 62 (236)
.++++|++|+|||||+|.|+|...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 789999999999999999999764
No 232
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.56 E-value=9.5e-05 Score=61.32 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCCccccccCcC-------cccceEEEEeeeCCeeEEEEeCCCCCCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGERVVTVNSFQS-------EALRPVMVSRSKGGFTLNIIDTPGLVEAG 99 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~liDTPG~~d~~ 99 (236)
-.++++|++|+|||||+|.|.|......+.... .+....... .. ....++|+||+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~--~~-~~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK--FD-FGGYVVDTPGFANLE 235 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE--CT-TSCEEESSCSSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEE--cC-CCCEEEECcCCCccC
Confidence 378999999999999999999876433332221 111111111 11 234789999986544
No 233
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.47 E-value=0.0009 Score=55.48 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+-.++++|++|+||||+++.|.|.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 347899999999999999998854
No 234
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.45 E-value=0.00013 Score=60.36 Aligned_cols=72 Identities=14% Similarity=0.016 Sum_probs=39.4
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
.+..++++||||.... +......+........++.+++|.+.. .. ...+..++... .. ....-+|+||.
T Consensus 179 ~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~~~~~~~lv~~~~--~~----~~~~~~~~~~~-~~-~~i~givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--TG----QEALSVARAFD-EK-VGVTGLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--GT----HHHHHHHHHHH-HH-TCCCEEEEECG
T ss_pred CCCCEEEEeCCCCccc---cHHHHHHHHHHhhhcCCCEEEEEEeCC--Cc----HHHHHHHHHHh-hc-CCCCEEEEECC
Confidence 3567999999987533 223333333333223688888885432 21 22333333221 11 14467899999
Q ss_pred CCC
Q 026593 163 QLC 165 (236)
Q Consensus 163 D~~ 165 (236)
|..
T Consensus 248 d~~ 250 (295)
T 1ls1_A 248 DGD 250 (295)
T ss_dssp GGC
T ss_pred CCC
Confidence 974
No 235
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.45 E-value=0.00088 Score=58.42 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHh-------CC----------Ccccccc-CcCcccceEEEEee-----eCC--eeEEEEeC
Q 026593 38 LTILVMGKGGVGKSSTVNSVI-------GE----------RVVTVNS-FQSEALRPVMVSRS-----KGG--FTLNIIDT 92 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~-------~~----------~~~~~~~-~~~~~~~~~~~~~~-----~~~--~~~~liDT 92 (236)
.-|.|+|.+++|||+|+|.|+ |. ..+.++. ..+.|.....+... .++ ..++++||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 556699999999999999665 21 2222222 22334333333211 123 46999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHH
Q 026593 93 PGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTG 145 (236)
Q Consensus 93 PG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~ 145 (236)
.|+++.......-...+ ++..--++++||- ... .++..+.+.+..+.+
T Consensus 148 EG~~d~~~~~~~d~~if--aLa~LLSS~~IyN--~~~-~i~~~~L~~L~~~te 195 (457)
T 4ido_A 148 QGTFDSQSTLRDSATVF--ALSTMISSIQVYN--LSQ-NVQEDDLQHLQLFTE 195 (457)
T ss_dssp CCBTCTTCCHHHHHHHH--HHHHHHCSEEEEE--EES-SCCHHHHHHHHHHHH
T ss_pred cCCCCcccCccccHHHH--HHHHHHhhheeec--ccc-cCCHHHHHHHHHHHH
Confidence 99988765432111111 0111135666666 322 355666655554443
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.43 E-value=0.00035 Score=53.91 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=41.5
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
..+++++|||+... ......+ ..+|.++++...+. .+..-..+++.+.+........++.+|+|++|
T Consensus 75 ~yD~viiD~~~~~~-----~~~~~~l------~~ad~viiv~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~ 141 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----VITSAAV------MVSDLVIIPVTPSP--LDFSAAGSVVTVLEAQAYSRKVEARFLITRKI 141 (206)
T ss_dssp TSSEEEEECCSSSS-----HHHHHHH------HHCSEEEEEECSCT--TTHHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred CCCEEEEECCCCCC-----HHHHHHH------HHCCEEEEEecCCH--HHHHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 46799999998642 1222222 25789999955543 22333456666655432233356799999998
Q ss_pred C
Q 026593 164 L 164 (236)
Q Consensus 164 ~ 164 (236)
.
T Consensus 142 ~ 142 (206)
T 4dzz_A 142 E 142 (206)
T ss_dssp T
T ss_pred C
Confidence 5
No 237
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.42 E-value=0.0015 Score=55.46 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+-.++++|++|+||||+++.|.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 457899999999999999998854
No 238
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.36 E-value=0.00014 Score=62.64 Aligned_cols=78 Identities=8% Similarity=0.147 Sum_probs=47.3
Q ss_pred EeeeCCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCC--C-----ChHHHHHHHHHHHhhCc--
Q 026593 79 SRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYR--V-----DDLDRQIIKAVTGTFGK-- 149 (236)
Q Consensus 79 ~~~~~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~--~-----~~~~~~~l~~l~~~~~~-- 149 (236)
...+++..+.+|||+|+........ .|. .+++++|||++++... + ...-..+..++......
T Consensus 211 ~~~~~~v~l~iwDtaGQe~~r~~w~-------~yf--~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 211 KFQVDKVNFHMFDVGGQRDERRKWI-------QCF--NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp EEEETTEEEEEEEECCSGGGGGGGG-------GGT--TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred EeecCCccceecccchhhhhhhhhH-------hhc--cCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 3455778999999999965433221 122 5899999999886410 0 11112233333333321
Q ss_pred cccCcEEEEEeCCCCC
Q 026593 150 QIWRKSLLVLTHAQLC 165 (236)
Q Consensus 150 ~~~~~~ivv~tk~D~~ 165 (236)
....|+++|+||+|+.
T Consensus 282 ~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 282 LRTISVILFLNKQDLL 297 (402)
T ss_dssp CSSCCEEEEEECHHHH
T ss_pred CCCCeEEEEEEChhhh
Confidence 1237999999999984
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.30 E-value=0.00014 Score=56.79 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 25 ELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 25 ~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
++.+.+.+...+...|.++|++|||||||++.|.+.
T Consensus 10 ~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444555443345679999999999999999998865
No 240
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.27 E-value=0.00034 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
...+|+++|.+|+|||||+++++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999854
No 241
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.10 E-value=0.00051 Score=58.24 Aligned_cols=72 Identities=7% Similarity=0.057 Sum_probs=42.5
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCC--------CCCChHHHHHHHHHHHhhCc--cccC
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDA--------YRVDDLDRQIIKAVTGTFGK--QIWR 153 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~--------~~~~~~~~~~l~~l~~~~~~--~~~~ 153 (236)
...+.+|||+|+......... + ..+++++++|++++. .... .-..+..++...... ....
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~-------y--~~~~~~iI~v~dis~ydq~l~e~~~~~-s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIH-------L--FEGVTAVIFCAAISEYDQTLFEDEQKN-RMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGG-------G--CTTEEEEEEEEEGGGTTCBCSSCTTSB-HHHHHHHHHHHHHTCGGGSSC
T ss_pred ceeeEEEECCCchhhhHHHHH-------H--hCCCCEEEEEEECcccccccccccchh-HHHHHHHHHHHHHhccccCCC
Confidence 457999999999665433221 1 258999999988751 1111 112233333333321 1237
Q ss_pred cEEEEEeCCCCC
Q 026593 154 KSLLVLTHAQLC 165 (236)
Q Consensus 154 ~~ivv~tk~D~~ 165 (236)
|+++|+||+|+.
T Consensus 252 piiLvgNK~DL~ 263 (354)
T 2xtz_A 252 SFMLFLNKFDIF 263 (354)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEEECcchh
Confidence 999999999984
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.10 E-value=0.0001 Score=57.37 Aligned_cols=26 Identities=27% Similarity=0.603 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
+.--|+|+|++|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 33478999999999999999998653
No 243
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0045 Score=53.75 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+--|++.|+||+|||+++.++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998854
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.09 E-value=0.0002 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
-.++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999874
No 245
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.06 E-value=0.00025 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
+++++|++|+|||||++.|+|.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998763
No 246
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.05 E-value=0.00023 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
-.++|+|++|+|||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999874
No 247
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0066 Score=52.57 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+--|++.|+||+|||+++.++.+.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 4567999999999999999999865
No 248
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.96 E-value=0.0036 Score=46.14 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
+.-.++++|++|+|||+|++++.+.-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34478999999999999999998754
No 249
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.95 E-value=0.019 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.+..+++.|++|+|||+++.++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.90 E-value=0.00068 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.381 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.-.++++|++||||||+++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999999999986
No 251
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.90 E-value=0.017 Score=48.76 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+++.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 252
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.89 E-value=0.00038 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
-.++++|++|||||||++.|.|..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 367899999999999999998754
No 253
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.88 E-value=0.0011 Score=52.94 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 026593 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 23 ~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~ 58 (236)
+.++..++......+..|+++|++||||||+++.|.
T Consensus 15 ~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 15 LNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp HHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHH
Confidence 344555554444577899999999999999999886
No 254
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.87 E-value=0.0004 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
-++|+|++||||||+++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998653
No 255
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.85 E-value=0.00044 Score=53.36 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.--++++|++|||||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999875
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.84 E-value=0.00044 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
-.++|+|++|||||||++.|+|..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368899999999999999998743
No 257
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.83 E-value=0.00045 Score=54.54 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
--++|+|++|||||||++.|+|..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478899999999999999998754
No 258
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.82 E-value=0.013 Score=47.42 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+-.+++.|++|+|||+++.++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 5568999999999999999998753
No 259
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.82 E-value=0.00061 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|||||||++.|+|-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999875
No 260
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.77 E-value=0.0017 Score=47.46 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 23 ~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+.++.+.+.........|++.|++|+|||+++.++...
T Consensus 10 ~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 10 INQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 34444444444456678999999999999999998754
No 261
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.76 E-value=0.00072 Score=53.52 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.++|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999875
No 262
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.72 E-value=0.00083 Score=50.70 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
--++++|++|||||||++.+.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCG
T ss_pred EEEEEECCCCCCHHHHHHHHccC
Confidence 36789999999999999986643
No 263
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.71 E-value=0.001 Score=53.13 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh---CCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI---GER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~---~~~ 61 (236)
++..|+|+|++||||||+++.|. |..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45689999999999999999999 764
No 264
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.69 E-value=0.00095 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999875
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.69 E-value=0.00081 Score=52.23 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+...|.++|++|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998874
No 266
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.66 E-value=0.0017 Score=53.43 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=22.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
...+..|.++|++|+|||||++.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 446789999999999999999887643
No 267
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.66 E-value=0.00096 Score=51.31 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 026593 40 ILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~ 60 (236)
|+|+|++|+||+||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
No 268
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.66 E-value=0.00094 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|||||||++.|+|--
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67899999999999999999864
No 269
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.65 E-value=0.00098 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.++|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999874
No 270
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.65 E-value=0.00098 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|+|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999874
No 271
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.65 E-value=0.0011 Score=53.16 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999874
No 272
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.64 E-value=0.0011 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
+...|+++|++||||||+++.|.+.-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999998653
No 273
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.64 E-value=0.001 Score=52.30 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999875
No 274
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.64 E-value=0.00098 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|+|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 67899999999999999999864
No 275
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.63 E-value=0.0011 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|||||||++.|+|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999874
No 276
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.63 E-value=0.0022 Score=53.22 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 26 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.++.+.-.-.+.=.++|+|++|+|||||++.|+|-
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34444433334458999999999999999998853
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.63 E-value=0.00078 Score=54.63 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+.=.++++|++|+|||||++.+++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3347899999999999999999874
No 278
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.63 E-value=0.0011 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
+.--|+++|++|+||||+++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578999999999999999998653
No 279
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.017 Score=50.14 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+--|++.|+||+|||+++.++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999998864
No 280
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.62 E-value=0.0024 Score=49.35 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcC-CCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 22 KLIELLSKLKQEN-VNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 22 ~~~~~~~~~~~~~-~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.+.++.+.+.+.. .....|.++|++|+||||+++.|.+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444555555432 3457899999999999999998874
No 281
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.61 E-value=0.00085 Score=50.18 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
+.-.++++|+.|||||||++.|+|.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34478999999999999999998764
No 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.61 E-value=0.001 Score=53.73 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.++|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999874
No 283
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.61 E-value=0.0023 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
..+..|+++|.+||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998864
No 284
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.60 E-value=0.0012 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|.-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999875
No 285
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.59 E-value=0.0015 Score=49.14 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+..|+++|.+|+||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999875
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.58 E-value=0.0016 Score=50.30 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+...|+++|++|+||||+++.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5578999999999999999998754
No 287
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.57 E-value=0.0012 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|||||||++.|+|-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 67899999999999999999874
No 288
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.57 E-value=0.00095 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998764
No 289
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.56 E-value=0.0013 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 78999999999999999999874
No 290
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.56 E-value=0.0012 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999874
No 291
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.55 E-value=0.0013 Score=51.01 Aligned_cols=25 Identities=32% Similarity=0.608 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
...-|+|+|++||||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999998743
No 292
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.55 E-value=0.0012 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
.++++|++|+|||||++.|+|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999996
No 293
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.54 E-value=0.0027 Score=52.99 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=26.7
Q ss_pred HHHHHHHHHhc--CCCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 23 LIELLSKLKQE--NVNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 23 ~~~~~~~~~~~--~~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+......+... ...++-|.++|++|||||||++.|.+
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44444444433 34678899999999999999988753
No 294
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.54 E-value=0.0013 Score=53.23 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|||||||++.|+|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999875
No 295
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.54 E-value=0.0014 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67899999999999999999975
No 296
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.53 E-value=0.0014 Score=53.48 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|--
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999874
No 297
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.53 E-value=0.0033 Score=51.64 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhc---CCCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 20 QNKLIELLSKLKQE---NVNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 20 ~~~~~~~~~~~~~~---~~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
..-+.+++..+-.. ...+.-|+++|++||||||+++.|..
T Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 13 ENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33344455544322 23457899999999999999999863
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.52 E-value=0.001 Score=50.72 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
.++++|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 299
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.52 E-value=0.0015 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
.++++|++|||||||++.|+|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999996
No 300
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.51 E-value=0.0015 Score=53.53 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67899999999999999999874
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.49 E-value=0.0016 Score=49.35 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+..|++.|.+||||||+++.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.47 E-value=0.0017 Score=48.72 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~ 59 (236)
..|+++|.+|+||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 303
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.46 E-value=0.0015 Score=50.47 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+.-.|+|+|++||||||+++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999988753
No 304
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.45 E-value=0.0017 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.++|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999975
No 305
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.45 E-value=0.0016 Score=52.85 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67899999999999999999874
No 306
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.45 E-value=0.0022 Score=46.84 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
....|++.|++|+|||+++.++...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 5567999999999999999998754
No 307
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.43 E-value=0.0018 Score=48.17 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=18.5
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 026593 38 LTILVMGKGGVGKSSTVNSV 57 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l 57 (236)
..|+++|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 308
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.43 E-value=0.0011 Score=55.08 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|||||||++.|+|--
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 78999999999999999999864
No 309
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.42 E-value=0.054 Score=44.02 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+-.+++.|++|+|||++++++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999998753
No 310
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.41 E-value=0.0017 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+.-.|+++|++|+||||+++.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998764
No 311
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.026 Score=48.47 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+--+++.|+||+|||+++.++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999864
No 312
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.40 E-value=0.0012 Score=51.75 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+.++|++|+|||||++.++|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999987
No 313
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.40 E-value=0.0044 Score=46.49 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=30.5
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 12 FQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
++.+.... +.+.++.+.+.. ..+-.+++.|++|+|||++++.+...
T Consensus 21 ~~~~~g~~-~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRD-EEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCH-HHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccch-HHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34444333 335555555544 23457899999999999999988754
No 314
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.40 E-value=0.0032 Score=47.53 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.-.++++|++|+|||+|++++.+.-
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999988653
No 315
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.39 E-value=0.0013 Score=50.70 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.++|.-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999988753
No 316
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.39 E-value=0.002 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.641 Sum_probs=19.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~ 58 (236)
.+..|+++|.+||||||+.+.|.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998875
No 317
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.39 E-value=0.005 Score=50.83 Aligned_cols=64 Identities=8% Similarity=0.065 Sum_probs=41.3
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChH-HHHHHHHHHHhhCccccCcEEEEEeCCCC
Q 026593 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDL-DRQIIKAVTGTFGKQIWRKSLLVLTHAQL 164 (236)
Q Consensus 86 ~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 164 (236)
.+.+||| +..+...... + ..++|++++|++++....+.. -..|+..+.. ...|+++|+||+|+
T Consensus 64 ~~~iwD~--qer~~~l~~~-------~--~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKP-------H--VANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CCCSCEETTT-------T--EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGG
T ss_pred eEEEEEE--ccccceeecc-------c--cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHc
Confidence 7899999 5444433221 1 148999999988865333332 2345554443 13899999999999
Q ss_pred C
Q 026593 165 C 165 (236)
Q Consensus 165 ~ 165 (236)
.
T Consensus 128 ~ 128 (301)
T 1u0l_A 128 Y 128 (301)
T ss_dssp C
T ss_pred C
Confidence 6
No 318
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.37 E-value=0.002 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.602 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999875
No 319
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.37 E-value=0.0017 Score=55.23 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.-.++++|++|+|||||++.|++.-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3489999999999999999999864
No 320
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.37 E-value=0.002 Score=47.98 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
.|+++|.+||||||+++.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 321
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.35 E-value=0.0019 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
...|+++|++||||||+++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998875
No 322
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.35 E-value=0.0011 Score=52.35 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=15.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHh-CC
Q 026593 38 LTILVMGKGGVGKSSTVNSVI-GE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~-~~ 60 (236)
-.++|+|++||||||+++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999999 65
No 323
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.35 E-value=0.0014 Score=55.60 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
.++++|++|+|||||+++++|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999864
No 324
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.33 E-value=0.0025 Score=48.49 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.+..|+++|.+|+||||+++.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998863
No 325
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.33 E-value=0.0028 Score=49.06 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
..+...|+++|.+|+||||+++.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345578999999999999999999875
No 326
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.30 E-value=0.002 Score=54.67 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 67899999999999999999975
No 327
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.30 E-value=0.002 Score=53.57 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+...|.|+|++|||||||++.|.|.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45678999999999999999998864
No 328
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.29 E-value=0.0018 Score=54.33 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 329
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.28 E-value=0.0021 Score=57.13 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
-.++++|++|||||||++++++.-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999999753
No 330
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.26 E-value=0.0024 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.|+|-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 67899999999999999999875
No 331
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.26 E-value=0.0072 Score=48.79 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=26.0
Q ss_pred HHHHHHhc-CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 26 LLSKLKQE-NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 26 ~~~~~~~~-~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+.+.+... ...+..+++.|++|+|||+++.++...
T Consensus 52 l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 52 LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44444432 345678999999999999999998753
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.25 E-value=0.003 Score=48.06 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
....|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988654
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.25 E-value=0.0026 Score=48.12 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~ 58 (236)
....|+++|.+||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999886
No 334
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.24 E-value=0.0028 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
..|.++|++||||||+.+.|.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 47899999999999999999863
No 335
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.23 E-value=0.0031 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
++..|++.|.+|+||||+++.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 336
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.23 E-value=0.00099 Score=50.52 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+.++|++|+|||||++.|++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999865
No 337
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.22 E-value=0.003 Score=49.41 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.+..|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988753
No 338
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.22 E-value=0.0029 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~ 58 (236)
...|+++|.+|+||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 339
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.21 E-value=0.0024 Score=54.11 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|.|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67899999999999999999875
No 340
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.21 E-value=0.0031 Score=48.59 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.-.|+++|++||||||+.+.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34899999999999999998873
No 341
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.21 E-value=0.0027 Score=48.90 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
...|+|+|.+||||||+++.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 342
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.20 E-value=0.0025 Score=54.48 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 67899999999999999999875
No 343
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.19 E-value=0.002 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
=-++++|++|+|||||++.+++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999873
No 344
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.18 E-value=0.0023 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~ 59 (236)
..|+++|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 345
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.18 E-value=0.0026 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|.|-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 67899999999999999999874
No 346
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.17 E-value=0.0026 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 67899999999999999999874
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.17 E-value=0.0037 Score=48.10 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
...+..|+|+|.+|+||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988763
No 348
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.16 E-value=0.0026 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 67899999999999999999874
No 349
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.16 E-value=0.0027 Score=50.65 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+...|.++|++|||||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999999988763
No 350
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.14 E-value=0.0056 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
..-.++++|++|+|||||++.+.+.
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3346899999999999999998865
No 351
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.14 E-value=0.011 Score=45.94 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=38.0
Q ss_pred CeeEEEEeCCCC-CCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 84 GFTLNIIDTPGL-VEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 84 ~~~~~liDTPG~-~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
..+++++|||+. ... .....+ ..+|.++++...+...+.. -..+++.+.+.. ..++.+|+|++
T Consensus 67 ~yD~viiD~p~~~~~~-----~~~~~l------~~aD~viiv~~~~~~~~~~-~~~~~~~l~~~~----~~~~~vv~N~~ 130 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE-----DLEALA------DGCDLLVIPSTPDALALDA-LMLTIETLQKLG----NNRFRILLTII 130 (209)
T ss_dssp GCSEEEEEEECCCSSS-----HHHHHH------HTSSEEEEEECSSHHHHHH-HHHHHHHHHHTC----SSSEEEEECSB
T ss_pred cCCEEEEeCCCCcCcH-----HHHHHH------HHCCEEEEEecCCchhHHH-HHHHHHHHHhcc----CCCEEEEEEec
Confidence 457999999986 332 222222 2689999985443211111 133444454422 25688999999
Q ss_pred CCC
Q 026593 163 QLC 165 (236)
Q Consensus 163 D~~ 165 (236)
+..
T Consensus 131 ~~~ 133 (209)
T 3cwq_A 131 PPY 133 (209)
T ss_dssp CCT
T ss_pred CCc
Confidence 863
No 352
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.14 E-value=0.0037 Score=47.62 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~ 58 (236)
++..|+++|.+||||||+++.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999998876
No 353
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.13 E-value=0.0032 Score=48.99 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 026593 39 TILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~ 58 (236)
+|+|+|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999885
No 354
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.13 E-value=0.003 Score=47.96 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
..++++|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999999864
No 355
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.12 E-value=0.0023 Score=54.58 Aligned_cols=24 Identities=46% Similarity=0.542 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.-.++++|++|+||||+++.|++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999864
No 356
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.12 E-value=0.0028 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.627 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57899999999999999999875
No 357
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.11 E-value=0.0029 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|.|-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 67899999999999999999874
No 358
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.043 Score=47.91 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
..+--|+|.|++|+|||+|+.++.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 35678999999999999999999864
No 359
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.09 E-value=0.0022 Score=55.54 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
=.++|+|++|+|||||++++++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999864
No 360
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.09 E-value=0.0061 Score=48.74 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+..+++.|++|+|||++++++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.09 E-value=0.0041 Score=49.94 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh---CCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI---GER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~---~~~ 61 (236)
+...|.++|++||||||+++.|. |..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 44689999999999999999998 653
No 362
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.08 E-value=0.0082 Score=49.97 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 21 NKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
..+...++.....+.....+++.|++|+|||+++.++...
T Consensus 39 ~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 39 KNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp HHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3444455544433445668999999999999999998643
No 363
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.08 E-value=0.021 Score=46.92 Aligned_cols=69 Identities=20% Similarity=0.104 Sum_probs=36.4
Q ss_pred CeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcE-EEEEeCC
Q 026593 84 GFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKS-LLVLTHA 162 (236)
Q Consensus 84 ~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivv~tk~ 162 (236)
..+++|+|||+........ ..+ ..+|.++++...+...+. .-..+++.+.+. +.+...++ -+|+|++
T Consensus 156 ~yD~ViiD~p~~~~~~~~~--------~~l--~~aD~viiv~~~~~~s~~-~~~~~~~~l~~~-~~~~~~~~~gvV~N~~ 223 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGGFA--------APL--QHADQAVVVTANDFDSIY-AMNRIIAAVQAK-SKNYKVRLAGCVANRS 223 (307)
T ss_dssp SCSEEEEEECCSSCCGGGG--------GGG--GTCSEEEEEECSSHHHHH-HHHHHHHHHHTT-TTTCCCEEEEEEEESC
T ss_pred cCCEEEEeCCCccchHHHH--------HHH--HHCCEEEEEecCcHHHHH-HHHHHHHHHHHh-hhcCCCceEEEEEecC
Confidence 4578999998754321111 011 368999999544321111 113345555443 22222443 4999999
Q ss_pred CC
Q 026593 163 QL 164 (236)
Q Consensus 163 D~ 164 (236)
+.
T Consensus 224 ~~ 225 (307)
T 3end_A 224 RA 225 (307)
T ss_dssp SC
T ss_pred Cc
Confidence 84
No 364
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.07 E-value=0.0022 Score=54.45 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.-+++++|++|+|||||++.|.|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 365
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.07 E-value=0.0041 Score=47.63 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+..|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 5678999999999999999998854
No 366
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.06 E-value=0.0035 Score=48.74 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 026593 39 TILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~ 58 (236)
+|+|+|.+|+||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999885
No 367
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.06 E-value=0.0058 Score=45.72 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=30.4
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 12 FQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+..+.... ..+..+.+.+.. ...-.+++.|++|+|||+++..+...
T Consensus 21 ~~~~~g~~-~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRD-TEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCH-HHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcch-HHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34444333 235555555543 23457899999999999999887643
No 368
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.06 E-value=0.0081 Score=46.96 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
..-.+++.|++|+|||+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988743
No 369
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.05 E-value=0.0033 Score=49.82 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 026593 38 LTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~ 58 (236)
=-++++|++|||||||++.++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 367889999999999999887
No 370
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.05 E-value=0.0044 Score=47.54 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+..|++.|.+||||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998754
No 371
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.04 E-value=0.0037 Score=47.37 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
.|++.|.+|+||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 372
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.03 E-value=0.0038 Score=47.81 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998874
No 373
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.03 E-value=0.0085 Score=51.15 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 26 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.++.+.-...+.-.++++|++|+|||||++.+.+.
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34444333334568899999999999999998853
No 374
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.00 E-value=0.067 Score=45.54 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
....++|.|++|+|||+++.++...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998643
No 375
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.00 E-value=0.0046 Score=47.82 Aligned_cols=24 Identities=21% Similarity=0.327 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
++..|++.|.+|+||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998873
No 376
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.99 E-value=0.0041 Score=46.90 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~ 58 (236)
....|+++|.+|+||||+++.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34579999999999999999887
No 377
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.99 E-value=0.033 Score=46.26 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
++-.+++.|++|+|||+++.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3468999999999999999998753
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.99 E-value=0.0042 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~ 58 (236)
++..|+++|.+||||||+++.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999886
No 379
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.98 E-value=0.0024 Score=53.95 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 67899999999999999999875
No 380
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.98 E-value=0.0035 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|+|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68899999999999999999864
No 381
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.97 E-value=0.0029 Score=51.60 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
-++++|++|+|||+|++++.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999874
No 382
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.97 E-value=0.005 Score=46.72 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=22.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.++...|+++|.+|+||||+++.|...
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 345678999999999999999988743
No 383
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.95 E-value=0.0045 Score=47.79 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.+..|++.|.+||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 384
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.92 E-value=0.18 Score=41.37 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=18.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.+--+++.|++|+|||+++.++..
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHH
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHH
Confidence 334467777799999999999864
No 385
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.90 E-value=0.0041 Score=51.55 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.....|.|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35578999999999999999988763
No 386
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.90 E-value=0.0024 Score=48.86 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+..|+++|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999988863
No 387
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.89 E-value=0.0051 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.-.++++|++|+|||+++..+.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999988753
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.88 E-value=0.0046 Score=48.36 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~ 58 (236)
.+..|+|+|.+||||||+++.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999998886
No 389
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.88 E-value=0.012 Score=45.10 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999888743
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.87 E-value=0.0057 Score=46.09 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+...|+++|.+|+||||+++.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998875
No 391
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.86 E-value=0.0036 Score=47.15 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=16.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~ 58 (236)
++..|++.|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999886
No 392
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.86 E-value=0.0036 Score=50.06 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
-++++|++|+|||+|++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 393
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.85 E-value=0.0044 Score=46.54 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
+|+++|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988864
No 394
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.85 E-value=0.013 Score=49.22 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 22 KLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.+..+...+.......-.+++.|++|+|||+++.++..
T Consensus 55 ~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 55 AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34445555544333446899999999999999988873
No 395
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.84 E-value=0.019 Score=45.22 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=35.9
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCC
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHA 162 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 162 (236)
...+++|+|||+.... ..... + ..+|.++++...+...+... ..+.+ +....+. ..+.+|+|+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~---l------~~aD~viiv~~~~~~s~~~~-~~~~~-~~~~~~~---~~~~~v~N~~ 193 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGT---A------KAVDMMIAVIEPNLNSIKTG-LNIEK-LAGDLGI---KKVRYVINKV 193 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHH---H------TTCSEEEEEECSSHHHHHHH-HHHHH-HHHHHTC---SCEEEEEEEE
T ss_pred CCCCEEEEeCCCcccH--HHHHH---H------HHCCEEEEecCCCHHHHHHH-HHHHH-HHHHcCC---ccEEEEEeCC
Confidence 4567899999875433 11111 1 47899999955442222111 22222 2222222 5688999999
Q ss_pred C
Q 026593 163 Q 163 (236)
Q Consensus 163 D 163 (236)
+
T Consensus 194 ~ 194 (254)
T 3kjh_A 194 R 194 (254)
T ss_dssp C
T ss_pred C
Confidence 7
No 396
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.82 E-value=0.0047 Score=49.66 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
-|+++|++|+||||+...|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 397
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.82 E-value=0.0049 Score=46.50 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
-.+++|++|+||||++.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999998763
No 398
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.80 E-value=0.0024 Score=54.08 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|||||||++.|.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67899999999999999999875
No 399
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.79 E-value=0.0054 Score=47.72 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 026593 39 TILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~ 58 (236)
+|++.|.+||||||+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999998885
No 400
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.79 E-value=0.0051 Score=48.57 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+..-|++.|..||||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999875
No 401
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.78 E-value=0.011 Score=47.50 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 24 IELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 24 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
....+.+......+..+++.|++|+|||+++.++...
T Consensus 16 ~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 16 LEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp HHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3334444433335578999999999999999998744
No 402
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.78 E-value=0.015 Score=44.52 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
..+++.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988753
No 403
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.76 E-value=0.0069 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~ 58 (236)
....|++.|.+|+||||+.+.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999998886
No 404
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.74 E-value=0.026 Score=47.90 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 026593 40 ILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~ 58 (236)
.+++|++|+||||++++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999987
No 405
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.73 E-value=0.0069 Score=47.17 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.+..|+++|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 406
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.73 E-value=0.012 Score=45.78 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 23 LIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 23 ~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+..+...+.. +..+-.+++.|++|+|||+++..+..
T Consensus 32 ~~~l~~~l~~-~~~~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 32 LTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp HHHHHHHHHH-TCCCSEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344444433 22334789999999999999988874
No 407
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.73 E-value=0.0063 Score=45.15 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988853
No 408
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.70 E-value=0.016 Score=50.62 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 19 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.+..+..+++.+.....++-.+++.|++|+|||+++.++..
T Consensus 45 ~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 34445555555554444557899999999999999988773
No 409
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.70 E-value=0.017 Score=47.30 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=21.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
......+++.|++|+|||+++.++..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 33556899999999999999987664
No 410
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.70 E-value=0.0067 Score=48.27 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~ 58 (236)
.++.|++.|++|+||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999887
No 411
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.69 E-value=0.01 Score=48.94 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 20 QNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
...+...++.....+.....+++.|++|+|||+++.++..
T Consensus 21 ~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 21 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp HHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3444555554443344556899999999999999998864
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.67 E-value=0.0058 Score=47.71 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~ 58 (236)
...|+++|.+||||||+++.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999998885
No 413
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.63 E-value=0.0081 Score=45.41 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 026593 37 TLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~ 58 (236)
+..|+++|.+||||||+.+.|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998886
No 414
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.60 E-value=0.0039 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
-++++|..|||||||+|.|++.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5688999999999999999965
No 415
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.58 E-value=0.0088 Score=47.22 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
....|+++|.+|+||||+++.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988863
No 416
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.56 E-value=0.0054 Score=49.82 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
-++++|++|+|||+|++++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999864
No 417
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.54 E-value=0.0085 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
...|+++|.+||||||+++.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 418
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.53 E-value=0.014 Score=45.41 Aligned_cols=22 Identities=27% Similarity=0.221 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~ 59 (236)
-.+++.|++|+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999988777663
No 419
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.53 E-value=0.0076 Score=44.89 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988763
No 420
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.014 Score=48.70 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 34 NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 34 ~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+..+-.+++.|+||+|||++++.++..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 346779999999999999999998744
No 421
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.51 E-value=0.0082 Score=47.13 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 026593 39 TILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~ 58 (236)
.|++.|.+||||||+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998875
No 422
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.50 E-value=0.0058 Score=47.63 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~ 59 (236)
--++++|++|+|||||++.+++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3678899999999999998884
No 423
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.47 E-value=0.0087 Score=45.52 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 424
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.47 E-value=0.0076 Score=54.39 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.++|--
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 78999999999999999999864
No 425
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.46 E-value=0.0092 Score=47.73 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.++.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999988754
No 426
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.46 E-value=0.008 Score=45.38 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 026593 39 TILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~ 58 (236)
.|+++|.+|+||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999999998875
No 427
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.46 E-value=0.008 Score=53.76 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.+.++|++|+|||||++.|.|.-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 428
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.45 E-value=0.0089 Score=45.28 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988864
No 429
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.0053 Score=53.83 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
..-.++|+|++|||||||++.|+|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44589999999999999999998763
No 430
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.38 E-value=0.011 Score=49.11 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+..+++.|++|+|||+++.++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999998743
No 431
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.38 E-value=0.0082 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.++|--
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 432
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.38 E-value=0.0097 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
.|+++|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999998887743
No 433
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.38 E-value=0.01 Score=44.13 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 026593 38 LTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~ 58 (236)
-.|+|.|.+||||||+.+.|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 379999999999999998875
No 434
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.37 E-value=0.015 Score=45.02 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
....|+++|.+|+||||+++.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988653
No 435
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.36 E-value=0.017 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.+..+++.|++|+|||+++.++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988864
No 436
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.36 E-value=0.027 Score=47.48 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+-.+++.|++|+|||++++.+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999998753
No 437
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.34 E-value=0.011 Score=44.53 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~ 59 (236)
..+.++|.+|+|||||+..|+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988874
No 438
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.34 E-value=0.0037 Score=48.39 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 439
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.32 E-value=0.011 Score=48.19 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~ 58 (236)
.+..|+|+|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999886
No 440
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.32 E-value=0.0066 Score=48.81 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.-.|+++|++|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999998864
No 441
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.30 E-value=0.019 Score=47.34 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 24 IELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 24 ~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.++.+.+......+..|++.|++|+|||+++.++..
T Consensus 12 ~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 12 QHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp HHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 334444444444677899999999999999998874
No 442
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.29 E-value=0.0072 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
=-++|+|++|+|||||++.+++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999887743
No 443
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.26 E-value=0.008 Score=54.46 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.++|--
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 378999999999999999999864
No 444
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.25 E-value=0.0076 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.++|--
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 78999999999999999999874
No 445
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.22 E-value=0.0071 Score=54.57 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.++++|++|+|||||++.++|.-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 78999999999999999999864
No 446
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.19 E-value=0.008 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
=.+.|+|++|||||||++.|.|-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 36789999999999999998854
No 447
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.19 E-value=0.01 Score=53.09 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|+.|||||||++.|+|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 67899999999999999999864
No 448
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.18 E-value=0.012 Score=43.31 Aligned_cols=20 Identities=35% Similarity=0.737 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 026593 39 TILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~ 58 (236)
-.+++|+.|+||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 34788999999999998865
No 449
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.18 E-value=0.0088 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|+|||||++.++|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999863
No 450
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.16 E-value=0.0092 Score=49.90 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 026593 40 ILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~ 59 (236)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 451
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.16 E-value=0.013 Score=47.98 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+.-+++.|++|+|||+++.++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567888899999999999988743
No 452
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.15 E-value=0.0089 Score=46.26 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~ 59 (236)
--++++|++|+|||||+..+++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999886
No 453
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.13 E-value=0.017 Score=48.43 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=26.7
Q ss_pred HHHHHHHHHhc--CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 23 LIELLSKLKQE--NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 23 ~~~~~~~~~~~--~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+..+.+.+... +...-.+++.|++|+|||+|++.+.+.
T Consensus 29 ~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 29 IRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp HHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34444444321 334568999999999999999998853
No 454
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.13 E-value=0.037 Score=45.44 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+-.+++.|++|+|||++++++.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 4567999999999999999998854
No 455
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.12 E-value=0.012 Score=45.61 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
...|+++|+||+|||+|+..|...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999998653
No 456
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.12 E-value=0.014 Score=48.54 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+.-|+++|+||+|||+|...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 446889999999999999998754
No 457
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.011 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.+.++|++|+|||||++.|.|..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 378999999999999999999874
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.10 E-value=0.012 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.+.++|++|+|||||++.|.|.-
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 378999999999999999999864
No 459
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.08 E-value=0.024 Score=46.90 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
..-.+++.|++|+|||+++.++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998753
No 460
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.06 E-value=0.0088 Score=53.65 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+...|+|+|.+||||||+++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 5568999999999999999998865
No 461
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.05 E-value=0.017 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+.-|+|+|+||+|||+|...|...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999865
No 462
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.05 E-value=0.014 Score=47.78 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~ 59 (236)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 463
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.00 E-value=0.017 Score=44.26 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 026593 39 TILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~ 59 (236)
.|.+.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988864
No 464
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.00 E-value=0.011 Score=46.61 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
--++++|++|+|||||+..+++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999998873
No 465
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.99 E-value=0.015 Score=44.74 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
....|.++|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988763
No 466
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.99 E-value=0.019 Score=48.23 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=26.8
Q ss_pred HHHHHHHHHhc--CCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 23 LIELLSKLKQE--NVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 23 ~~~~~~~~~~~--~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+.++...+... ...+-.+++.|++|+|||++++.+...
T Consensus 28 ~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 28 LRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp HHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34444444332 335568999999999999999998754
No 467
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.98 E-value=0.011 Score=49.88 Aligned_cols=25 Identities=24% Similarity=0.338 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.=++.++|++|+|||||++.|+|..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999999764
No 468
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.93 E-value=0.031 Score=49.13 Aligned_cols=42 Identities=31% Similarity=0.397 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHh------cC-CCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 19 TQNKLIELLSKLKQ------EN-VNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 19 ~~~~~~~~~~~~~~------~~-~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
...++.++.+.+.. .+ ..+--++++|++|+|||++++++.+.
T Consensus 24 ~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 24 AIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44555665554432 11 12346999999999999999999864
No 469
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.92 E-value=0.015 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|++|+|||||++.|+|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999874
No 470
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.90 E-value=0.019 Score=45.38 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
....|++.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999887643
No 471
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.90 E-value=0.018 Score=51.13 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 26 LLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 26 ~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+++.++.+......|+++|.+||||||+.++|...
T Consensus 384 Lr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 384 LRESNPPRPKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp HHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred HHHhcccccccceEEEecccCCCCHHHHHHHHHHH
Confidence 44444334446689999999999999999888643
No 472
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.86 E-value=0.028 Score=46.85 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+++.|++|+||||++..+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988754
No 473
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.82 E-value=0.013 Score=51.13 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
+.=++.++|++|+|||||++.|+|..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34488999999999999999998764
No 474
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.82 E-value=0.016 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
++..|+++|.+|+||||+...|..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999987754
No 475
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.75 E-value=0.022 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=18.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+--|+++|+|||||+|....|..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 33466789999999999888774
No 476
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.74 E-value=0.96 Score=36.94 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=39.1
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 86 ~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+++|||||+.... .+... + ...+|.+++|...+...... -...++.+.+. +. ..+-+|+|++|..
T Consensus 215 D~VIIDtpp~~~~--~d~~~---l-----~~~ad~vilV~~~~~~~~~~-~~~~~~~l~~~-~~---~~~GvVlN~~~~~ 279 (299)
T 3cio_A 215 DLVIVDTPPMLAV--SDAAV---V-----GRSVGTSLLVARFGLNTAKE-VSLSMQRLEQA-GV---NIKGAILNGVIKR 279 (299)
T ss_dssp SEEEEECCCTTTC--THHHH---H-----GGGCSEEEEEEETTTSCTTH-HHHHHHHHHHT-TC---CCCCEEEEECCCC
T ss_pred CEEEEcCCCCchh--HHHHH---H-----HHHCCEEEEEEcCCCChHHH-HHHHHHHHHhC-CC---CeEEEEEeCCccC
Confidence 5899999987532 11111 1 13689999997766544433 34556666553 21 3455888999864
No 477
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.73 E-value=0.022 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
....|.++|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 557899999999999999988874
No 478
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.73 E-value=0.017 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|+.|+|||||++.|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999975
No 479
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.71 E-value=0.01 Score=58.63 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
+|.++|++|||||||++.|++-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7899999999999999999975
No 480
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=94.70 E-value=0.81 Score=37.18 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=38.2
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHHHHHHHHHHHhhCccccCcEEEEEeCCCCC
Q 026593 86 TLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRQIIKAVTGTFGKQIWRKSLLVLTHAQLC 165 (236)
Q Consensus 86 ~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 165 (236)
+++|||||..... .+ ... + ...+|.+++|...+..... .-...++.+.+. + ...+-+|+|++|..
T Consensus 203 D~VIIDtpp~~~~--~d--a~~-l-----~~~aD~vllVv~~~~~~~~-~~~~~~~~l~~~-g---~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 203 DLVLIDTPPILAV--TD--AAI-V-----GRHVGTTLMVARYAVNTLK-EVETSLSRFEQN-G---IPVKGVILNSIFRR 267 (286)
T ss_dssp SEEEEECCCTTTC--TH--HHH-H-----TTTCSEEEEEEETTTSBHH-HHHHHHHHHHHT-T---CCCCEEEEEEECCC
T ss_pred CEEEEcCCCCcch--HH--HHH-H-----HHHCCeEEEEEeCCCCcHH-HHHHHHHHHHhC-C---CCEEEEEEcCcccc
Confidence 5899999987432 11 111 1 1468999999665533221 123444555443 2 25678999999863
No 481
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.67 E-value=0.035 Score=45.17 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
.+..+++.|++|+|||+++.++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988864
No 482
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.63 E-value=0.058 Score=47.05 Aligned_cols=45 Identities=16% Similarity=0.390 Sum_probs=35.3
Q ss_pred ccccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 026593 11 GFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVI 58 (236)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~ 58 (236)
.++.|..+.++.+..++..+.... -.++|.|.+|+|||+++..+.
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~ 66 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFII 66 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHH
Confidence 677888888887777777665532 288999999999999987765
No 483
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.60 E-value=0.019 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~~ 61 (236)
.+.++|+.|+|||||++.|+|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999975
No 484
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.58 E-value=0.85 Score=36.21 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=35.2
Q ss_pred CCeeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHH-HHHHHHHHHhhCccccCcEE-EEEe
Q 026593 83 GGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSL-LVLT 160 (236)
Q Consensus 83 ~~~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~-~~~l~~l~~~~~~~~~~~~i-vv~t 160 (236)
....++|+|||+.... ...... .. ..+|.++++...+ ..+... ...++.+.+. + .+++ +|+|
T Consensus 127 ~~yD~ViID~pp~~~~-----~~~~~~-~~---~~aD~viiv~~~~--~~s~~~~~~~~~~l~~~-~----~~~~gvV~N 190 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGD-----APLTVM-QD---AKPTGVVVVSTPQ--ELTAVIVEKAINMAEET-N----TSVLGLVEN 190 (262)
T ss_dssp CSCSEEEEECCSSSSS-----HHHHHH-HH---HCCSEEEEEECSS--SCCHHHHHHHHHHHHTT-T----CCEEEEEET
T ss_pred cCCCEEEEECcCCCch-----HHHHHH-hh---ccCCeEEEEecCc--cchHHHHHHHHHHHHhC-C----CCEEEEEEC
Confidence 3457899999985321 111111 01 1578888885444 333222 3344444331 2 4555 9999
Q ss_pred CCCC
Q 026593 161 HAQL 164 (236)
Q Consensus 161 k~D~ 164 (236)
+.|.
T Consensus 191 ~~~~ 194 (262)
T 2ph1_A 191 MSYF 194 (262)
T ss_dssp TCCE
T ss_pred CCcc
Confidence 9874
No 485
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.57 E-value=0.019 Score=47.88 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~ 60 (236)
..|+|+|++|+||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999888743
No 486
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.53 E-value=0.027 Score=46.72 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+.-|+++|+||+|||+|...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 456889999999999999998743
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.48 E-value=0.02 Score=48.06 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~ 59 (236)
.-|+|+|++|+|||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4789999999999999988774
No 488
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.47 E-value=0.046 Score=48.39 Aligned_cols=43 Identities=30% Similarity=0.467 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHhc------C-CCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 18 ATQNKLIELLSKLKQE------N-VNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 18 ~~~~~~~~~~~~~~~~------~-~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.....+.++...+... + ..+--++|+|++|+|||+|++++.+.
T Consensus 38 ~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 38 EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp HHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3455566666555421 0 11335999999999999999999864
No 489
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.46 E-value=0.024 Score=49.76 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+..|+++|.+|+||||+.+.|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998743
No 490
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.46 E-value=0.017 Score=46.34 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 37 TLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 37 ~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+..+++.|++|+|||+++.++.+.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 345899999999999999998753
No 491
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.46 E-value=0.039 Score=48.33 Aligned_cols=46 Identities=13% Similarity=0.339 Sum_probs=30.1
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 12 FQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
+..++.+. ..+..++..+... ..-+++++|++|+|||+++..+...
T Consensus 179 ld~iiGr~-~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 179 LDPVIGRS-KEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCCCCCCH-HHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCccCcH-HHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34444433 3344555555432 4458899999999999999887743
No 492
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.02 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 026593 40 ILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 40 IllvG~~g~GKSSlin~l~~~~ 61 (236)
+.++|++|+|||||++.|+|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999999875
No 493
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.39 E-value=0.017 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~ 59 (236)
--++++|++|+|||||+..+++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999988775
No 494
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.37 E-value=0.015 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=17.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
+.+.|.+.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988764
No 495
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.023 Score=49.41 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+--|++.|+||+|||+++.++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999865
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.34 E-value=0.052 Score=45.73 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhC
Q 026593 35 VNTLTILVMGKGGVGKSSTVNSVIG 59 (236)
Q Consensus 35 ~~~~~IllvG~~g~GKSSlin~l~~ 59 (236)
..+..++|.|++|+|||+++.++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999874
No 497
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.32 E-value=0.022 Score=56.34 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Q 026593 38 LTILVMGKGGVGKSSTVNSVIGER 61 (236)
Q Consensus 38 ~~IllvG~~g~GKSSlin~l~~~~ 61 (236)
=.++++|++|+|||||++.|+|.-
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cEEEEEecCCCcHHHHHHHhcccc
Confidence 378999999999999999999863
No 498
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.29 E-value=0.029 Score=48.40 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhCC
Q 026593 36 NTLTILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 36 ~~~~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+.-|+++|.+||||||+++.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999998753
No 499
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.28 E-value=0.038 Score=45.90 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 026593 39 TILVMGKGGVGKSSTVNSVIGE 60 (236)
Q Consensus 39 ~IllvG~~g~GKSSlin~l~~~ 60 (236)
.+++.|++|+|||+++..+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988754
No 500
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.22 E-value=1.2 Score=35.68 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=34.9
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCChHH-HHHHHHHHHhhCccccCcEEEEEeCCC
Q 026593 85 FTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLD-RQIIKAVTGTFGKQIWRKSLLVLTHAQ 163 (236)
Q Consensus 85 ~~~~liDTPG~~d~~~~~~~~~~~i~~~l~~~~~~~il~v~~~d~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D 163 (236)
.+++|+|||+.... .+... +. ..+|.+++|...+.. +... ...++.+.+. +. ..+-+|+|++|
T Consensus 192 yD~VIIDtpp~~~~--~d~~~---l~-----~~aD~vilVv~~~~~--~~~~~~~~~~~l~~~-~~---~~~GvVlN~~~ 255 (271)
T 3bfv_A 192 YNFVIIDTPPVNTV--TDAQL---FS-----KFTGNVVYVVNSENN--NKDEVKKGKELIEAT-GA---KLLGVVLNRMP 255 (271)
T ss_dssp CSEEEEECCCTTTC--SHHHH---HH-----HHHCEEEEEEETTSC--CHHHHHHHHHHHHTT-TC---EEEEEEEEEEC
T ss_pred CCEEEEeCCCCchH--HHHHH---HH-----HHCCEEEEEEeCCCC--cHHHHHHHHHHHHhC-CC---CEEEEEEeCCc
Confidence 35899999987532 11111 11 246889999665532 2222 3334444322 21 23448999998
Q ss_pred CC
Q 026593 164 LC 165 (236)
Q Consensus 164 ~~ 165 (236)
..
T Consensus 256 ~~ 257 (271)
T 3bfv_A 256 KD 257 (271)
T ss_dssp C-
T ss_pred CC
Confidence 63
Done!