Query 026594
Match_columns 236
No_of_seqs 106 out of 1201
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 10:02:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 2.6E-45 5.7E-50 307.4 25.6 230 1-235 79-330 (365)
2 COG0631 PTC1 Serine/threonine 100.0 2.9E-43 6.3E-48 284.8 22.2 222 1-235 23-252 (262)
3 PTZ00224 protein phosphatase 2 100.0 3.6E-41 7.7E-46 283.4 25.2 220 1-235 36-271 (381)
4 KOG0698 Serine/threonine prote 100.0 7.6E-41 1.7E-45 279.1 25.0 234 1-235 54-304 (330)
5 PF00481 PP2C: Protein phospha 100.0 5.7E-42 1.2E-46 277.6 11.2 223 1-227 14-254 (254)
6 KOG0697 Protein phosphatase 1B 100.0 1.4E-39 3.1E-44 252.9 18.8 230 1-235 36-291 (379)
7 cd00143 PP2Cc Serine/threonine 100.0 1.1E-37 2.4E-42 252.1 23.6 227 1-234 15-254 (254)
8 smart00332 PP2Cc Serine/threon 100.0 4.1E-37 8.8E-42 249.2 23.5 224 1-232 20-255 (255)
9 PRK14559 putative protein seri 100.0 7.4E-37 1.6E-41 270.6 24.0 209 16-235 413-635 (645)
10 KOG0700 Protein phosphatase 2C 100.0 5.8E-31 1.2E-35 215.9 16.1 210 13-222 95-378 (390)
11 KOG0699 Serine/threonine prote 100.0 6.1E-30 1.3E-34 205.9 18.4 157 76-236 327-504 (542)
12 KOG1323 Serine/threonine phosp 99.9 3.8E-25 8.2E-30 176.7 16.2 223 13-235 140-487 (493)
13 KOG1379 Serine/threonine prote 99.9 1.9E-24 4.2E-29 172.1 19.2 202 2-234 92-330 (330)
14 KOG0618 Serine/threonine phosp 99.9 2.9E-22 6.3E-27 178.7 15.7 215 14-235 548-772 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.8 4.8E-19 1E-23 137.7 19.4 161 14-219 27-192 (193)
16 PF13672 PP2C_2: Protein phosp 99.8 1.6E-19 3.4E-24 142.4 12.4 168 2-203 13-193 (212)
17 TIGR02865 spore_II_E stage II 99.7 3.4E-16 7.4E-21 143.4 20.4 175 14-234 577-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.7 3.5E-15 7.6E-20 115.8 19.6 176 15-235 2-193 (193)
19 COG2208 RsbU Serine phosphatas 99.0 1.5E-07 3.3E-12 80.4 20.0 175 15-235 173-366 (367)
20 PRK10693 response regulator of 73.0 45 0.00098 27.6 9.6 93 15-111 161-259 (303)
21 COG2168 DsrH Uncharacterized c 63.9 3.8 8.2E-05 27.7 1.0 50 174-227 22-71 (96)
22 PF09436 DUF2016: Domain of un 52.0 9.6 0.00021 24.4 1.4 17 176-193 26-42 (72)
23 COG3700 AphA Acid phosphatase 37.9 55 0.0012 25.1 3.7 45 178-222 71-130 (237)
24 PF01436 NHL: NHL repeat; Int 36.8 59 0.0013 16.2 3.7 18 89-106 11-28 (28)
25 cd08325 CARD_CASP1-like Caspas 25.5 1.4E+02 0.003 19.5 3.7 32 191-222 30-61 (83)
26 COG5518 Bacteriophage capsid p 21.8 48 0.001 28.4 1.1 133 88-234 190-329 (492)
27 TIGR02276 beta_rpt_yvtn 40-res 21.5 1.4E+02 0.0031 15.7 3.4 19 90-108 3-21 (42)
28 cd01482 vWA_collagen_alphaI-XI 21.1 2.7E+02 0.0059 20.3 5.1 12 179-190 105-116 (164)
29 PF07821 Alpha-amyl_C2: Alpha- 21.0 1.9E+02 0.0042 17.7 3.4 28 86-113 13-40 (59)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=2.6e-45 Score=307.42 Aligned_cols=230 Identities=36% Similarity=0.594 Sum_probs=193.3
Q ss_pred Ccccchhhhccc--------CCcceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHHhc
Q 026594 1 MEDYLVAEYRKK--------KNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENS 72 (236)
Q Consensus 1 ~ED~~~~~~~~~--------~~~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 72 (236)
|||++++..+.. ...+..+|||||||||..+++++++.+.+.+.+.......+.++|.++|..++..+....
T Consensus 79 nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~al~~af~~~d~~~~~~~ 158 (365)
T PLN03145 79 MEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKVVSSAFLQTDTAFAEAC 158 (365)
T ss_pred CCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhHHHHhhh
Confidence 899886532211 123468999999999999999999999999988665555678899999999999987654
Q ss_pred ccC-CCCccceEEEEEEeCCeEEEEecccCeEEEEecCceeecCCCCCChh--HHHHHHHcCCeEEcCCCCCCccCCccc
Q 026594 73 MQL-GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFVTSLPGDVPRVNGQLA 149 (236)
Q Consensus 73 ~~~-~~~~~tt~~~~~i~~~~~~~a~vGDsr~~~~~~~~~~~lt~dh~~~~--e~~r~~~~g~~~~~~~~~~~~~~~~~~ 149 (236)
... ...+|||++++++.++++|++|+||||+|+++++++.+||.||++.+ |..|+...|+.+.. .+.++...
T Consensus 159 ~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~-----g~v~g~l~ 233 (365)
T PLN03145 159 SLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYD-----GYLNGQLN 233 (365)
T ss_pred ccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceec-----ceECCccc
Confidence 322 34589999999999999999999999999999999999999999987 88899999988763 35566778
Q ss_pred ccccccCcCCcc-------CcccCceEEEEEeCCCCeEEEEeeCCCcCCCCHHHHHhcc----ccCCCHHHHHHHHHHHH
Q 026594 150 VARAFGDQSLKA-------HLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLV----KPIKDPQAAAKRLTTEA 218 (236)
Q Consensus 150 ~t~~lG~~~~~~-------~~~~~~~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~~~----~~~~~~~~~a~~l~~~a 218 (236)
+||+||+..+|. .+.++|++..+++.+++.+|||||||||++++++++.+++ ....+|+++|+.|++.|
T Consensus 234 vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~A 313 (365)
T PLN03145 234 VARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEA 313 (365)
T ss_pred cccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999876642 2567999999999988788899999999999999975444 44568999999999999
Q ss_pred HHcCCCCCcEEEEEEeC
Q 026594 219 LARKSKDDISCIVIRFG 235 (236)
Q Consensus 219 ~~~~~~DN~Tvivv~~~ 235 (236)
+.+++.||+|+|||+|+
T Consensus 314 l~rgs~DNITvIVV~l~ 330 (365)
T PLN03145 314 LKRKSGDNLAVVVVCFQ 330 (365)
T ss_pred HhCCCCCCEEEEEEEee
Confidence 99999999999999986
No 2
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-43 Score=284.76 Aligned_cols=222 Identities=31% Similarity=0.456 Sum_probs=188.3
Q ss_pred CcccchhhhcccCCcceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCC---Cc-C--HHHHHHHHHHHHHHHHHHhcc-
Q 026594 1 MEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNF---WK-D--PKAAITNAYRSTDQFILENSM- 73 (236)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~---~~-~--~~~~l~~~~~~~~~~i~~~~~- 73 (236)
+||++.+........ ..+|+|||||||+++++.+++.+++.+.+.... .. . ..+.+.+++..+|..+.....
T Consensus 23 NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~i~~~~~~ 101 (262)
T COG0631 23 NEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAILKANEAIAEEGQL 101 (262)
T ss_pred CCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhhc
Confidence 689998866544445 789999999999999999988888888764221 11 1 578999999999999998865
Q ss_pred -cCCCCccceEEEEEEeCCeEEEEecccCeEEEEecCceeecCCCCCChhHHHHHHHcCCeEEcCCCCCCccCCcccccc
Q 026594 74 -QLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVAR 152 (236)
Q Consensus 74 -~~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~~~~~~~~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~~~~~~~~t~ 152 (236)
....+++||++++++.++++|+||+||||+|++|++++.++|.||++.++.. ..+.........+|+.+ .+||
T Consensus 102 ~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~---~~~~~~~~~~~~~~~~~---~ltr 175 (262)
T COG0631 102 NEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLE---QRGIITPEEARSHPRRN---ALTR 175 (262)
T ss_pred ccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHH---HhcCCCHHHHHhCccch---hhhh
Confidence 2347899999999999999999999999999999999999999999987533 33333333333445555 9999
Q ss_pred cccCcCCccCcccCceEEEEEeCCCCeEEEEeeCCCcCCCCHHHHHhccccCCCHHHHHHHHHHHHHHcCCCCCcEEEEE
Q 026594 153 AFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVI 232 (236)
Q Consensus 153 ~lG~~~~~~~~~~~~~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~~~~DN~Tvivv 232 (236)
++|... ...|++...++.++ +++||||||+|+.++++++.++++...+|+++++.|++.|+.+++.||+|+++|
T Consensus 176 alG~~~-----~~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li~~a~~~g~~DNiT~ilv 249 (262)
T COG0631 176 ALGDFD-----LLEPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLIELALEGGGPDNITVVLV 249 (262)
T ss_pred hcCCCc-----ccceeEEEEEcCCC-CEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 999988 58999999999999 999999999999999999999999778999999999999999999999999999
Q ss_pred EeC
Q 026594 233 RFG 235 (236)
Q Consensus 233 ~~~ 235 (236)
++.
T Consensus 250 ~~~ 252 (262)
T COG0631 250 RLN 252 (262)
T ss_pred Eee
Confidence 864
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=3.6e-41 Score=283.39 Aligned_cols=220 Identities=37% Similarity=0.608 Sum_probs=178.5
Q ss_pred CcccchhhhcccCCcceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHHhcccCCCCcc
Q 026594 1 MEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGS 80 (236)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~ 80 (236)
|||++++. ..++..+|+|||||||..+|.++++.+.+.+.+.... ...+.|++++..+|+.+..... ..|+
T Consensus 36 nED~~~v~----~~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~--~~~~~l~~a~~~~d~~i~~~~~---~~Gs 106 (381)
T PTZ00224 36 MEDAHLLY----LTDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP--MTDERMEELCLEIDEEWMDSGR---EGGS 106 (381)
T ss_pred CCCeeEec----cCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHHHHHhccc---CCCC
Confidence 89987652 2345679999999999999999999888766443221 1245699999999999986543 2344
Q ss_pred ceEEEEEEeCCeEEEEecccCeEEEEecCceeecCCCCCChh--HHHHHHHcCCeEEcCCCCCCccCCcccccccccCcC
Q 026594 81 TAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQS 158 (236)
Q Consensus 81 tt~~~~~i~~~~~~~a~vGDsr~~~~~~~~~~~lt~dh~~~~--e~~r~~~~g~~~~~~~~~~~~~~~~~~~t~~lG~~~ 158 (236)
|++++++..+.+++++|+||||+|++|+|++.+||.||++.+ |..|+...|+.+.. .+.++.+.+||++|+..
T Consensus 107 Tatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~-----~Rv~G~l~vTRalGd~~ 181 (381)
T PTZ00224 107 TGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVS-----NRVDGDLAVSRAFGDRS 181 (381)
T ss_pred eEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEecc-----ccccCceeeecccCCcc
Confidence 444444445789999999999999999999999999999987 77889888887652 35567789999999976
Q ss_pred Ccc---------CcccCceEEEEEeCCCCeEEEEeeCCCcC-CCCHHHHHhcccc----CCCHHHHHHHHHHHHHHcCCC
Q 026594 159 LKA---------HLSSEPDVRHVPIDPSIEFLILASDGLWK-VMKNQEAVDLVKP----IKDPQAAAKRLTTEALARKSK 224 (236)
Q Consensus 159 ~~~---------~~~~~~~~~~~~l~~~~d~liL~SDGv~d-~l~~~~i~~~~~~----~~~~~~~a~~l~~~a~~~~~~ 224 (236)
+|. .+..+|++..+++.++ |+|||||||||+ .++++++.+++.. ..+++.+|+.|++.|+.+++.
T Consensus 182 ~K~~~~~~~~~~~v~~~Pdi~~~~l~~~-D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~ 260 (381)
T PTZ00224 182 FKVKGTGDYLEQKVIAVPDVTHLTCQSN-DFIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRRGSK 260 (381)
T ss_pred cccccccccccCcceeeeEEEEEECCCC-CEEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Confidence 542 2457899999999988 999999999999 7999999988852 368999999999999999999
Q ss_pred CCcEEEEEEeC
Q 026594 225 DDISCIVIRFG 235 (236)
Q Consensus 225 DN~Tvivv~~~ 235 (236)
||+|+|||++.
T Consensus 261 DNITvIvV~~~ 271 (381)
T PTZ00224 261 DNISCLIVQLK 271 (381)
T ss_pred CCEEEEEEEee
Confidence 99999999975
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-41 Score=279.09 Aligned_cols=234 Identities=50% Similarity=0.721 Sum_probs=204.0
Q ss_pred Ccccchhhhcc----cCCc-ceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCcC---HHHHHHHHHH-HHHHHHHHh
Q 026594 1 MEDYLVAEYRK----KKNH-VLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKD---PKAAITNAYR-STDQFILEN 71 (236)
Q Consensus 1 ~ED~~~~~~~~----~~~~-~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~-~~~~~i~~~ 71 (236)
|||.+...... .... ..++|||||||||..+|.++.+.+...+.+....... ..++++++|. ..+..+..+
T Consensus 54 med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~~F~~~~D~~~~~~ 133 (330)
T KOG0698|consen 54 MEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRRAFLTKTDSEFLEK 133 (330)
T ss_pred cCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888765442 2233 6899999999999999999999999999998877774 7899999999 599999876
Q ss_pred cccCCCCccceEEEEEEeCCeEEEEecccCeEEEEecC-ceeecCCCCCChh--HHHHHHHcCCeEEcCCCCCCccCCcc
Q 026594 72 SMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERG-SANQITVDHEPHA--ERRRIEKQGGFVTSLPGDVPRVNGQL 148 (236)
Q Consensus 72 ~~~~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~~~~~~-~~~~lt~dh~~~~--e~~r~~~~g~~~~~~~~~~~~~~~~~ 148 (236)
.......|+|++++++.++.++|+||+|||||++.+.+ ...+||.||.+.. |+.|++..||.+..... .++.++.+
T Consensus 134 ~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~-~~Rv~G~L 212 (330)
T KOG0698|consen 134 REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGG-VWRVNGVL 212 (330)
T ss_pred ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCC-cceEeceE
Confidence 22223566677777767677999999999999999865 7999999999964 99999999999996554 56888999
Q ss_pred cccccccCcCCc-cCcccCceEEEEEeCCCCeEEEEeeCCCcCCCCHHHHHhcccc----CCCHHHHHHHHHHHHHHcCC
Q 026594 149 AVARAFGDQSLK-AHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKP----IKDPQAAAKRLTTEALARKS 223 (236)
Q Consensus 149 ~~t~~lG~~~~~-~~~~~~~~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~~~~~----~~~~~~~a~~l~~~a~~~~~ 223 (236)
.++|++|+..+| +.+.++|++....+.+.++||||+|||+||.+++++..++++. ...+..++..+.+.+..+++
T Consensus 213 avsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~~~s 292 (330)
T KOG0698|consen 213 AVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALSRGS 292 (330)
T ss_pred EEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhhcCC
Confidence 999999999999 7899999999999999779999999999999999999999988 56899999999999999999
Q ss_pred CCCcEEEEEEeC
Q 026594 224 KDDISCIVIRFG 235 (236)
Q Consensus 224 ~DN~Tvivv~~~ 235 (236)
.||+|+|||.|.
T Consensus 293 ~DnitvvvV~l~ 304 (330)
T KOG0698|consen 293 KDNITVVVVRLK 304 (330)
T ss_pred CCCeEEEEEEec
Confidence 999999999986
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=5.7e-42 Score=277.61 Aligned_cols=223 Identities=44% Similarity=0.681 Sum_probs=182.5
Q ss_pred Ccccchhhhccc---CCcceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCc--CHHHHHHHHHHH-HHHHHHHhccc
Q 026594 1 MEDYLVAEYRKK---KNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWK--DPKAAITNAYRS-TDQFILENSMQ 74 (236)
Q Consensus 1 ~ED~~~~~~~~~---~~~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~-~~~~i~~~~~~ 74 (236)
|||.+++..+.. ...+..+|+|||||||..+|.+++..+...+.+...... ++.++|..+|.. ++..+......
T Consensus 14 ~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~ 93 (254)
T PF00481_consen 14 MEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFLAFTDESLYSDSEN 93 (254)
T ss_dssp HHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceeeecccccccccccc
Confidence 688888765442 468899999999999999999999999977766443322 478999999999 88888763321
Q ss_pred -CCCCccceEEEEEEeCCeEEEEecccCeEEEEecCcee-ecCCCCCChh--HHHHHHHcCCeEEcCCCCCCccCCcccc
Q 026594 75 -LGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSAN-QITVDHEPHA--ERRRIEKQGGFVTSLPGDVPRVNGQLAV 150 (236)
Q Consensus 75 -~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~~~~~~~~~-~lt~dh~~~~--e~~r~~~~g~~~~~~~~~~~~~~~~~~~ 150 (236)
....+|||++++++.++++|+||+||||+|+++++... +||.||.+.+ |+.|++..|+.+.. ..+..+.+.+
T Consensus 94 ~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~----~~rv~g~l~~ 169 (254)
T PF00481_consen 94 NESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE----NGRVNGVLAV 169 (254)
T ss_dssp HTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE----TEEETTTBSS
T ss_pred cccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc----chhhhhcccc
Confidence 33667888999999999999999999999999999888 9999999996 99999999999885 3567777899
Q ss_pred cccccCcCCcc----CcccCceEEEEEeCCCCeEEEEeeCCCcCCCCHHHHHhccccCCC----HHHHHHHHHHHHHHcC
Q 026594 151 ARAFGDQSLKA----HLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKD----PQAAAKRLTTEALARK 222 (236)
Q Consensus 151 t~~lG~~~~~~----~~~~~~~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~~~~~~~~----~~~~a~~l~~~a~~~~ 222 (236)
||+||+..+|+ .+.++|++..+++.+++.+||||||||||+++++++.+++....+ |+.+|+.|++.|++++
T Consensus 170 sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~g 249 (254)
T PF00481_consen 170 SRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIARG 249 (254)
T ss_dssp SB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 99999999998 799999999999999866999999999999999999999977544 8999999999999999
Q ss_pred CCCCc
Q 026594 223 SKDDI 227 (236)
Q Consensus 223 ~~DN~ 227 (236)
+.|||
T Consensus 250 s~DNi 254 (254)
T PF00481_consen 250 SKDNI 254 (254)
T ss_dssp HHSHE
T ss_pred CCCCC
Confidence 99996
No 6
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-39 Score=252.91 Aligned_cols=230 Identities=32% Similarity=0.531 Sum_probs=202.0
Q ss_pred Ccccchhhhcc-cCCcceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCc--------CHHHHHHHHHHHHHHHHHHh
Q 026594 1 MEDYLVAEYRK-KKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWK--------DPKAAITNAYRSTDQFILEN 71 (236)
Q Consensus 1 ~ED~~~~~~~~-~~~~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~i~~~ 71 (236)
|||.+....-. ...++|++|+|||||-|+++|.+++..+.+.+.+...+.. +.+..|+..|.+++.-+...
T Consensus 36 MEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~ 115 (379)
T KOG0697|consen 36 MEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTL 115 (379)
T ss_pred hhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhh
Confidence 89999764322 3458999999999999999999999999999887655443 67888999999998877665
Q ss_pred cccC--CCCccceEEEEEEeCCeEEEEecccCeEEEEecCceeecCCCCCChh--HHHHHHHcCCeEEcCCCCCCccCCc
Q 026594 72 SMQL--GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFVTSLPGDVPRVNGQ 147 (236)
Q Consensus 72 ~~~~--~~~~~tt~~~~~i~~~~~~~a~vGDsr~~~~~~~~~~~lt~dh~~~~--e~~r~~~~g~~~~~~~~~~~~~~~~ 147 (236)
.... ...+|||.+++++...++|++|+||||+.++|+|+...-|+||.+.+ |.+|++.+||.+.. .+.|+.
T Consensus 116 ~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMI-----qRvNGs 190 (379)
T KOG0697|consen 116 SDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMI-----QRVNGS 190 (379)
T ss_pred hhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEEE-----EEecce
Confidence 5432 24588999999999999999999999999999999999999999997 99999999999884 488999
Q ss_pred ccccccccCcCCccC---------cccCceEEEEEeCCCCeEEEEeeCCCcCCCCHHHHHhcccc----CCCHHHHHHHH
Q 026594 148 LAVARAFGDQSLKAH---------LSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKP----IKDPQAAAKRL 214 (236)
Q Consensus 148 ~~~t~~lG~~~~~~~---------~~~~~~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~~~~~----~~~~~~~a~~l 214 (236)
+.++|+||+..||.. +.++|++..+.-...++||||++||+||..+++|+.++++. ..+..++++.+
T Consensus 191 LAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~V 270 (379)
T KOG0697|consen 191 LAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDV 270 (379)
T ss_pred eeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHH
Confidence 999999999999842 88999999999998889999999999999999999999866 46899999999
Q ss_pred HHHHHHcCCCCCcEEEEEEeC
Q 026594 215 TTEALARKSKDDISCIVIRFG 235 (236)
Q Consensus 215 ~~~a~~~~~~DN~Tvivv~~~ 235 (236)
++.|+..++.||+|+|++-|.
T Consensus 271 vDtCLhKGSRDNMsivlvcfp 291 (379)
T KOG0697|consen 271 VDTCLHKGSRDNMSIVLVCFP 291 (379)
T ss_pred HHHHHhccCccCceEEEEecC
Confidence 999999999999999998763
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=1.1e-37 Score=252.14 Aligned_cols=227 Identities=45% Similarity=0.658 Sum_probs=191.2
Q ss_pred CcccchhhhcccCCcceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCC-----CcCHHHHHHHHHHHHHHHHHHhccc-
Q 026594 1 MEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNF-----WKDPKAAITNAYRSTDQFILENSMQ- 74 (236)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~i~~~~~~- 74 (236)
+||++++..... ..++.+|+|+||+||+..+..+++.+.+.+.+.... ...+...|+++|+.+++.+......
T Consensus 15 neD~~~~~~~~~-~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 93 (254)
T cd00143 15 NEDAVVIKPNLN-NEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLRADEEILEEAQDE 93 (254)
T ss_pred CcceEEEeccCC-CCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 588887632211 026799999999999998888888888888765432 2456788999999999999887653
Q ss_pred -CCCCccceEEEEEEeCCeEEEEecccCeEEEEecCceeecCCCCCChh--HHHHHHHcCCeEEcCCCCCCccCCccccc
Q 026594 75 -LGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFVTSLPGDVPRVNGQLAVA 151 (236)
Q Consensus 75 -~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~~~~~~~~~~lt~dh~~~~--e~~r~~~~g~~~~~~~~~~~~~~~~~~~t 151 (236)
....++||++++++..++++++|+||||+|+++++++.++|.+|++.+ +..|+...++... ....+.+..+|
T Consensus 94 ~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~t 168 (254)
T cd00143 94 PDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVS-----NGRVPGVLAVT 168 (254)
T ss_pred cCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEE-----eCEEcCceeec
Confidence 235678999999999999999999999999999999999999999995 7788888877654 12445566999
Q ss_pred ccccCcCCccCcccCceEEEEEe-CCCCeEEEEeeCCCcCCCCHHHHHhccccCC---CHHHHHHHHHHHHHHcCCCCCc
Q 026594 152 RAFGDQSLKAHLSSEPDVRHVPI-DPSIEFLILASDGLWKVMKNQEAVDLVKPIK---DPQAAAKRLTTEALARKSKDDI 227 (236)
Q Consensus 152 ~~lG~~~~~~~~~~~~~~~~~~l-~~~~d~liL~SDGv~d~l~~~~i~~~~~~~~---~~~~~a~~l~~~a~~~~~~DN~ 227 (236)
+++|...+++....+|++..+++ .++ ++|+|||||||++++++++.+++.... +++++|+.|++.+.++++.||+
T Consensus 169 ~~lG~~~~~~~~~~~~~~~~~~l~~~~-d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l~~~a~~~~~~Dn~ 247 (254)
T cd00143 169 RALGDFDLKPGVSAEPDVTVVKLTEDD-DFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDLALRRGSHDNI 247 (254)
T ss_pred cccCCccccCCEEcCCeEEEEEeCCCC-cEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHHHHHHHhCCCCCCE
Confidence 99999977766688999999999 776 999999999999999999999998866 7999999999999999999999
Q ss_pred EEEEEEe
Q 026594 228 SCIVIRF 234 (236)
Q Consensus 228 Tvivv~~ 234 (236)
|+|++++
T Consensus 248 t~i~~~~ 254 (254)
T cd00143 248 TVVVVRL 254 (254)
T ss_pred EEEEEeC
Confidence 9999975
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=4.1e-37 Score=249.20 Aligned_cols=224 Identities=48% Similarity=0.708 Sum_probs=191.4
Q ss_pred CcccchhhhcccCCcceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCc----CHHHHHHHHHHHHHHHHHHhcccC-
Q 026594 1 MEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWK----DPKAAITNAYRSTDQFILENSMQL- 75 (236)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~i~~~~~~~- 75 (236)
+||++++... ...+..+|+||||+||..+|.++++.+.+.+.+...... .+...|++++..++..+.......
T Consensus 20 neD~~~~~~~--~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (255)
T smart00332 20 MEDAHVITPD--LSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKTDEEILEELESLE 97 (255)
T ss_pred CcceEEEecc--CCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4788776332 126789999999999999999999999988877654333 478889999999999998876653
Q ss_pred -CCCccceEEEEEEeCCeEEEEecccCeEEEEecCceeecCCCCCChh--HHHHHHHcCCeEEcCCCCCCccCCcccccc
Q 026594 76 -GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFVTSLPGDVPRVNGQLAVAR 152 (236)
Q Consensus 76 -~~~~~tt~~~~~i~~~~~~~a~vGDsr~~~~~~~~~~~lt~dh~~~~--e~~r~~~~g~~~~~~~~~~~~~~~~~~~t~ 152 (236)
...++||++++++..++++++|+||||+|++|++++.++|.+|++.+ +..|+...++.+.. .+.+....+|+
T Consensus 98 ~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~lt~ 172 (255)
T smart00332 98 EDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVIN-----GRVNGVLALSR 172 (255)
T ss_pred CCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEEC-----CeECCeEeccc
Confidence 25689999999999999999999999999999999999999999975 77788888776552 13445568999
Q ss_pred cccCcCCccCcccCceEEEEEe-CCCCeEEEEeeCCCcCCCCHHHHHhccccCC---CHHHHHHHHHHHHHHcCCCCCcE
Q 026594 153 AFGDQSLKAHLSSEPDVRHVPI-DPSIEFLILASDGLWKVMKNQEAVDLVKPIK---DPQAAAKRLTTEALARKSKDDIS 228 (236)
Q Consensus 153 ~lG~~~~~~~~~~~~~~~~~~l-~~~~d~liL~SDGv~d~l~~~~i~~~~~~~~---~~~~~a~~l~~~a~~~~~~DN~T 228 (236)
++|...+++.+..+|++...++ .++ ++|||||||||++++++++.+++.... ++.++++.|.+.+.+++..||+|
T Consensus 173 ~~g~~~~~~~i~~~p~~~~~~~~~~~-d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~Dn~T 251 (255)
T smart00332 173 AIGDFFLKPYVSAEPDVTVVELTEKD-DFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAKRLIDLALARGSKDNIT 251 (255)
T ss_pred ccCCHhhcCCeEeeeEEEEEEecCCC-cEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHcCCCCCeE
Confidence 9999988888888999999996 676 999999999999999999999997755 59999999999999999999999
Q ss_pred EEEE
Q 026594 229 CIVI 232 (236)
Q Consensus 229 vivv 232 (236)
+|++
T Consensus 252 ~ivv 255 (255)
T smart00332 252 VIVV 255 (255)
T ss_pred EEEC
Confidence 9985
No 9
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=7.4e-37 Score=270.55 Aligned_cols=209 Identities=21% Similarity=0.287 Sum_probs=159.1
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHHHH----HHhccCCCcCHHHHHHHHHHHHHHHHHHhcccC----CCCccceEEEEE
Q 026594 16 VLGLFAIFDGHLGDRVPTYLKDNLFNN----ILEESNFWKDPKAAITNAYRSTDQFILENSMQL----GPGGSTAVTAIV 87 (236)
Q Consensus 16 ~~~l~~V~DG~gg~~~a~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~----~~~~~tt~~~~~ 87 (236)
..++|+|||||||..+++.+++.+++. +.+.........+.|+++|..+|..|....... ...+|||+++++
T Consensus 413 ~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~al 492 (645)
T PRK14559 413 ARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMAL 492 (645)
T ss_pred cceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEE
Confidence 457999999999886555444444333 322211111246789999999999998765322 346899999999
Q ss_pred EeCCeEEEEecccCeEEEE-ecCceeecCCCCCChhHHHHHHHcCCeEEcCCCCCCccCCcccccccccCcCCccCcccC
Q 026594 88 IDGKDLWVANVGDSRAVVC-ERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSE 166 (236)
Q Consensus 88 i~~~~~~~a~vGDsr~~~~-~~~~~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~~~~~~~~t~~lG~~~~~~~~~~~ 166 (236)
+.++++|++|+||||+|++ |+|++.+||.||++.++ +.+.| ....... .+++++.+||++|....+ ..+
T Consensus 493 I~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~---lv~~G-i~~~~a~---~~p~~~~LTrALG~~~~~---~l~ 562 (645)
T PRK14559 493 VQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQR---EIQRG-VEPQIAY---ARPDAYQLTQALGPRDNS---AIQ 562 (645)
T ss_pred EECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHH---HHHhC-CCHHHHh---cCcccceeeeccCCCCCC---ccc
Confidence 9999999999999999998 56899999999998764 33444 2221121 223456999999986533 358
Q ss_pred ceEEEEEeCCCCeEEEEeeCCCcCC--CCH---HHHHhccccCCCHHHHHHHHHHHHHHcCCCCCcEEEEEEeC
Q 026594 167 PDVRHVPIDPSIEFLILASDGLWKV--MKN---QEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFG 235 (236)
Q Consensus 167 ~~~~~~~l~~~~d~liL~SDGv~d~--l~~---~~i~~~~~~~~~~~~~a~~l~~~a~~~~~~DN~Tvivv~~~ 235 (236)
|++..+++.++ ++|||||||||++ +.. +++..++....++.++++.|++.|+.+++.||+|+|||++.
T Consensus 563 Pdi~~~~L~~g-D~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~ 635 (645)
T PRK14559 563 PDIQFLEIEED-TLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQYNGHDNITAILVRLK 635 (645)
T ss_pred ceEEEEEcCCC-CEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEec
Confidence 99999999987 9999999999994 443 45566776667899999999999999999999999999975
No 10
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=5.8e-31 Score=215.86 Aligned_cols=210 Identities=36% Similarity=0.492 Sum_probs=167.9
Q ss_pred CCcceEEEEEEcCCCCChHHHHHHHHHHHHHHh------------cc----------------------CCCcCHHHHHH
Q 026594 13 KNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILE------------ES----------------------NFWKDPKAAIT 58 (236)
Q Consensus 13 ~~~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~------------~~----------------------~~~~~~~~~l~ 58 (236)
..+++.++||+|||||..+++++++.+...+.. .. .......++|.
T Consensus 95 ~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~ 174 (390)
T KOG0700|consen 95 EENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALS 174 (390)
T ss_pred ccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHH
Confidence 368899999999999999999999999988762 11 11356788999
Q ss_pred HHHHHHHHHHHHhcccC------CCCccceEEEEEEeCCeEEEEecccCeEEEEe---cC---ceeecCCCCCChh--HH
Q 026594 59 NAYRSTDQFILENSMQL------GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCE---RG---SANQITVDHEPHA--ER 124 (236)
Q Consensus 59 ~~~~~~~~~i~~~~~~~------~~~~~tt~~~~~i~~~~~~~a~vGDsr~~~~~---~~---~~~~lt~dh~~~~--e~ 124 (236)
+||++....+....... ...+|+++.+.++.+..+|+||+|||||.+-+ ++ ...|||.||+..+ |+
T Consensus 175 ~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev 254 (390)
T KOG0700|consen 175 KAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEV 254 (390)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHH
Confidence 99999999987655332 12346666666888999999999999999864 33 4689999999997 88
Q ss_pred HHHHHcCCeEEcC-CCCCCccCCcccccccccCcCCc---------------------cCcccCceEEEEEeCCCCeEEE
Q 026594 125 RRIEKQGGFVTSL-PGDVPRVNGQLAVARAFGDQSLK---------------------AHLSSEPDVRHVPIDPSIEFLI 182 (236)
Q Consensus 125 ~r~~~~g~~~~~~-~~~~~~~~~~~~~t~~lG~~~~~---------------------~~~~~~~~~~~~~l~~~~d~li 182 (236)
.|++..+.-.... -..+.+..|.+.++|++|+..+| |.+..+|.+...+|.+.|.|||
T Consensus 255 ~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLI 334 (390)
T KOG0700|consen 255 RRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLI 334 (390)
T ss_pred HHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEE
Confidence 8898887533221 12235888899999999999887 3488899999999999989999
Q ss_pred EeeCCCcCCCCHHHHHhccccC----CCHHHHHHHHHHHHHHcC
Q 026594 183 LASDGLWKVMKNQEAVDLVKPI----KDPQAAAKRLTTEALARK 222 (236)
Q Consensus 183 L~SDGv~d~l~~~~i~~~~~~~----~~~~~~a~~l~~~a~~~~ 222 (236)
|+|||+|++++++|+..++... .+-+.+|+.|++.|+.+.
T Consensus 335 lASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 335 LASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred EeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 9999999999999999888662 344678999999988643
No 11
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=6.1e-30 Score=205.95 Aligned_cols=157 Identities=37% Similarity=0.646 Sum_probs=139.5
Q ss_pred CCCccceEEEEEEeCCeEEEEecccCeEEEEecCceeecCCCCCChh--HHHHHHHcCCeEEcCCCCCCccCCccccccc
Q 026594 76 GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFVTSLPGDVPRVNGQLAVARA 153 (236)
Q Consensus 76 ~~~~~tt~~~~~i~~~~~~~a~vGDsr~~~~~~~~~~~lt~dh~~~~--e~~r~~~~g~~~~~~~~~~~~~~~~~~~t~~ 153 (236)
+..+|||.+++++.+.++++||.|||||++.|+|+..-++.||.+-. |..|+...||.+.- .++.++.++++|+
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtl----DGRVNGGLNLSRA 402 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTL----DGRVNGGLNLSRA 402 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEee----cceecCccchhhh
Confidence 34568999999999999999999999999999999999999999986 89999999999983 2689999999999
Q ss_pred ccCcCCccC---------cccCceEEEEEeCCCCeEEEEeeCCCcCCCCHHHHHhcccc----CCCHHHHHHHHHHHHHH
Q 026594 154 FGDQSLKAH---------LSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKP----IKDPQAAAKRLTTEALA 220 (236)
Q Consensus 154 lG~~~~~~~---------~~~~~~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~~~~~----~~~~~~~a~~l~~~a~~ 220 (236)
||+..||.. +.+-|+++...|.+.++|+|+++||||.+.+.+++.++++. ....-.++..|.+.|+.
T Consensus 403 ~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLA 482 (542)
T KOG0699|consen 403 FGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLA 482 (542)
T ss_pred hhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 999999854 67789999999999989999999999999999998887754 46778899999999996
Q ss_pred cC------CCCCcEEEEEEeCC
Q 026594 221 RK------SKDDISCIVIRFGQ 236 (236)
Q Consensus 221 ~~------~~DN~Tvivv~~~~ 236 (236)
.. ..||+|+|++.|.+
T Consensus 483 p~T~GDGTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 483 PSTDGDGTGCDNMTVIITTFKR 504 (542)
T ss_pred CCCCCCCcCCCcceEEEEEecc
Confidence 42 45999999998863
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=3.8e-25 Score=176.71 Aligned_cols=223 Identities=30% Similarity=0.447 Sum_probs=165.9
Q ss_pred CCcceEEEEEEcCCCCChHHHHHHHHHHHHHHhcc-------------------------C--------CC-------cC
Q 026594 13 KNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEES-------------------------N--------FW-------KD 52 (236)
Q Consensus 13 ~~~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~-------------------------~--------~~-------~~ 52 (236)
..-++.+|.+||||-|..+|-.+++.+.+-+.+.. + .. .-
T Consensus 140 ~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~L 219 (493)
T KOG1323|consen 140 PRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHL 219 (493)
T ss_pred CCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHh
Confidence 45678999999999999888777665543332200 0 00 01
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCccceEEEEEEeCCeEEEEecccCeEEEEecCceeecCCCCCChhHHHHHHHcCC
Q 026594 53 PKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGG 132 (236)
Q Consensus 53 ~~~~l~~~~~~~~~~i~~~~~~~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~~~~~~~~~~lt~dh~~~~e~~r~~~~g~ 132 (236)
..-+|..+|+..+..|.+........||||..+++.--+++|++|.||||++++|++++.+++.+-++..|++|++.-+-
T Consensus 220 ViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf 299 (493)
T KOG1323|consen 220 VIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAF 299 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhh
Confidence 35578999999999999888777777777777777779999999999999999999999999999999999999987652
Q ss_pred eEEcC--------------------------------------------------CCCCCccCCcccccccccCcCCc--
Q 026594 133 FVTSL--------------------------------------------------PGDVPRVNGQLAVARAFGDQSLK-- 160 (236)
Q Consensus 133 ~~~~~--------------------------------------------------~~~~~~~~~~~~~t~~lG~~~~~-- 160 (236)
...+. .+...++-+.+.++|.+|+..++
T Consensus 300 ~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~ 379 (493)
T KOG1323|consen 300 RNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVV 379 (493)
T ss_pred cChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeee
Confidence 21110 01111222346789999998775
Q ss_pred -------cCcccCceEEEEEeCC----CCeEEEEeeCCCcCCCCHHHHHhccccC------CCH---HHHHHHHHHHHHH
Q 026594 161 -------AHLSSEPDVRHVPIDP----SIEFLILASDGLWKVMKNQEAVDLVKPI------KDP---QAAAKRLTTEALA 220 (236)
Q Consensus 161 -------~~~~~~~~~~~~~l~~----~~d~liL~SDGv~d~l~~~~i~~~~~~~------~~~---~~~a~~l~~~a~~ 220 (236)
|.+...|++...++.+ .+|.+||+|||+||.++++++..++++. .+| ..+|+.|+..|..
T Consensus 380 dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg 459 (493)
T KOG1323|consen 380 DSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARG 459 (493)
T ss_pred cCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcC
Confidence 4477788888877652 2489999999999999999999888652 222 4677888887763
Q ss_pred -------------cCCCCCcEEEEEEeC
Q 026594 221 -------------RKSKDDISCIVIRFG 235 (236)
Q Consensus 221 -------------~~~~DN~Tvivv~~~ 235 (236)
.++.|||||.|+.+.
T Consensus 460 ~~k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 460 QQKDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred ccCCCceeccCCCcCCCCceEEEEEecc
Confidence 246799999999764
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-24 Score=172.10 Aligned_cols=202 Identities=22% Similarity=0.243 Sum_probs=140.0
Q ss_pred cccchhhhcccCCcceEEEEEEcCCCCCh--------HHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHHhcc
Q 026594 2 EDYLVAEYRKKKNHVLGLFAIFDGHLGDR--------VPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSM 73 (236)
Q Consensus 2 ED~~~~~~~~~~~~~~~l~~V~DG~gg~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 73 (236)
||.+++ -.+++..+.|||||+|||. .+..+++.+.+.+.+......+|...|.+++..+-. +..
T Consensus 92 EDa~Fv----ss~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~----~~~ 163 (330)
T KOG1379|consen 92 EDAWFV----SSNPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKS----QKV 163 (330)
T ss_pred Ccceee----ccCcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhh----cCC
Confidence 788877 3347788999999999983 555555555555555555555788777777755433 211
Q ss_pred cCCCCccceEEEEEEe-CCeEEEEecccCeEEEEecCceeecCCCCCChhHHHHHHHcCCeEEcCCCCCCccCCcccccc
Q 026594 74 QLGPGGSTAVTAIVID-GKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVAR 152 (236)
Q Consensus 74 ~~~~~~~tt~~~~~i~-~~~~~~a~vGDsr~~~~~~~~~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~~~~~~~~t~ 152 (236)
..-+++|+|++++-. +.++++||+|||.+.++|+|++.+-|..+.+. +..++.- ...+. ....
T Consensus 164 -~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~-----------FN~PyQL--s~~p~--~~~~ 227 (330)
T KOG1379|consen 164 -PIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHY-----------FNTPYQL--SSPPE--GYSS 227 (330)
T ss_pred -CCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheec-----------cCCceee--ccCCc--cccc
Confidence 113455555555443 78999999999999999999999888765432 2221110 00000 1122
Q ss_pred cccCcCCccCcccCceEEEEEeCCCCeEEEEeeCCCcCCCCHHHHHhcccc-----CCCHHHHHHHHHHHHHH-------
Q 026594 153 AFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKP-----IKDPQAAAKRLTTEALA------- 220 (236)
Q Consensus 153 ~lG~~~~~~~~~~~~~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~~~~~-----~~~~~~~a~~l~~~a~~------- 220 (236)
++++.+ -..+...+++.+| |.|||+|||+||++.+++|..++.. ..+++..|+.+.+.|..
T Consensus 228 ~~~d~p------~~ad~~~~~v~~G-DvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~ 300 (330)
T KOG1379|consen 228 YISDVP------DSADVTSFDVQKG-DVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKF 300 (330)
T ss_pred cccCCc------cccceEEEeccCC-CEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCc
Confidence 333322 2467899999999 9999999999999999999999844 35789999999998873
Q ss_pred ----------------cCCCCCcEEEEEEe
Q 026594 221 ----------------RKSKDDISCIVIRF 234 (236)
Q Consensus 221 ----------------~~~~DN~Tvivv~~ 234 (236)
.|..||||+||..+
T Consensus 301 ~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 301 QSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred CChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 13579999999753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=2.9e-22 Score=178.74 Aligned_cols=215 Identities=28% Similarity=0.442 Sum_probs=185.8
Q ss_pred CcceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHHhcccCCCCccceEEEEEEe----
Q 026594 14 NHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVID---- 89 (236)
Q Consensus 14 ~~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~tt~~~~~i~---- 89 (236)
.+....||.+||-+..+..+.+...+.+.+.++.....+-.+.|+++|.+.|+++..... ..+++.+.+-+.+
T Consensus 548 ~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl~~~rklg~~g~---~lg~~~~~~~i~~d~~~ 624 (1081)
T KOG0618|consen 548 LNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTFLRLNRKLGEEGQ---VLGGSVVLCQIVEDSLS 624 (1081)
T ss_pred cCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhhhhhhc---cccchhhheeecccccC
Confidence 466789999999999999999999999999998877777777899999999999954433 2233333333332
Q ss_pred ---CCeEEEEecccCeEEEEecCceeecCCCCCCh---hHHHHHHHcCCeEEcCCCCCCccCCcccccccccCcCCccCc
Q 026594 90 ---GKDLWVANVGDSRAVVCERGSANQITVDHEPH---AERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHL 163 (236)
Q Consensus 90 ---~~~~~~a~vGDsr~~~~~~~~~~~lt~dh~~~---~e~~r~~~~g~~~~~~~~~~~~~~~~~~~t~~lG~~~~~~~~ 163 (236)
...++.||+|+|++.++++|+..++|+-..+. .|.+|+++.+|++.+ ....+|....||++|.+...|.+
T Consensus 625 ~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~e----d~k~ngvt~~tR~iG~~~l~P~v 700 (1081)
T KOG0618|consen 625 PASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFITE----DNKLNGVTSSTRAIGPFSLFPHV 700 (1081)
T ss_pred cccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeecC----CCeeeceeeeeeecccccccccc
Confidence 24689999999999999999888877765333 399999999999995 25788888999999999999999
Q ss_pred ccCceEEEEEeCCCCeEEEEeeCCCcCCCCHHHHHhccccCCCHHHHHHHHHHHHHHcCCCCCcEEEEEEeC
Q 026594 164 SSEPDVRHVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDISCIVIRFG 235 (236)
Q Consensus 164 ~~~~~~~~~~l~~~~d~liL~SDGv~d~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~~~~DN~Tvivv~~~ 235 (236)
.+.|++....+.+.+++||+++-++|++++-+++.+.+++..+|-.+|+.|.+.|+++++.||++++||++.
T Consensus 701 ~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~ 772 (1081)
T KOG0618|consen 701 LPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKKLCDLAQSYGCAENVSVLVVRLN 772 (1081)
T ss_pred cCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHHHHHHHHhcccccCeeEEEEEee
Confidence 999999999999999999999999999999999999999989999999999999999999999999999975
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.84 E-value=4.8e-19 Score=137.69 Aligned_cols=161 Identities=20% Similarity=0.220 Sum_probs=122.2
Q ss_pred CcceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHHhcccCCCCccceEEEEEE--eCC
Q 026594 14 NHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVI--DGK 91 (236)
Q Consensus 14 ~~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~tt~~~~~i--~~~ 91 (236)
.++..+++|+||+|++..|..++..+...+.+....... +.+.+..+|+.+.... ....++|++++.+ ..+
T Consensus 27 ~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~----~~~~l~~~n~~l~~~~---~~~~~~T~~~~~id~~~~ 99 (193)
T smart00331 27 PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGIS----LSQILERLNRAIYENG---EDGMFATLFLALYDFAGG 99 (193)
T ss_pred CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCC----HHHHHHHHHHHHHhcC---CCCcEEEEEEEEEECCCC
Confidence 345789999999999999988888888877665443323 5556777788877652 2345777777776 578
Q ss_pred eEEEEecccCeEEEEe-cCceeecCCCCCChhHHHHHHHcCCeEEcCCCCCCccCCcccccccccCcCCccCcccCceEE
Q 026594 92 DLWVANVGDSRAVVCE-RGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVR 170 (236)
Q Consensus 92 ~~~~a~vGDsr~~~~~-~~~~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~ 170 (236)
+++++|+||+|+|+++ ++...+.+.+ .+..+|... ..+++..
T Consensus 100 ~l~~~~~Gd~~~~~~~~~~~~~~~~~~--------------------------------~~~~lG~~~-----~~~~~~~ 142 (193)
T smart00331 100 TLSYANAGHSPPYLLRADGGLVEDLDD--------------------------------LGAPLGLEP-----DVEVDVR 142 (193)
T ss_pred EEEEEeCCCCceEEEECCCCeEEEcCC--------------------------------CCceeeeCC-----CCcceeE
Confidence 9999999999999998 5554444432 234566544 3457788
Q ss_pred EEEeCCCCeEEEEeeCCCcCCCCHHHHHhccccC--CCHHHHHHHHHHHHH
Q 026594 171 HVPIDPSIEFLILASDGLWKVMKNQEAVDLVKPI--KDPQAAAKRLTTEAL 219 (236)
Q Consensus 171 ~~~l~~~~d~liL~SDGv~d~l~~~~i~~~~~~~--~~~~~~a~~l~~~a~ 219 (236)
.+++.++ |.|+|+|||+|+.+.++++.+++.+. .++++.++.+++.+.
T Consensus 143 ~~~l~~g-d~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 143 ELTLEPG-DLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred EEeeCCC-CEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9999999 99999999999999999998888774 468888888887654
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.82 E-value=1.6e-19 Score=142.45 Aligned_cols=168 Identities=20% Similarity=0.292 Sum_probs=92.3
Q ss_pred cccchhhhcccCCcceEEEEEEcCCCCChH----HHHHHHHHHHHHHhccCCCcC--HHHHHHHHHHHHHHHH-----HH
Q 026594 2 EDYLVAEYRKKKNHVLGLFAIFDGHLGDRV----PTYLKDNLFNNILEESNFWKD--PKAAITNAYRSTDQFI-----LE 70 (236)
Q Consensus 2 ED~~~~~~~~~~~~~~~l~~V~DG~gg~~~----a~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~i-----~~ 70 (236)
||++.+ ...++..+++|+||+|+... |..+++.+.+.+.+....... ....++.+...+...+ ..
T Consensus 13 qD~~~~----~~~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (212)
T PF13672_consen 13 QDAFGI----RTDDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIVRAFQSAK 88 (212)
T ss_dssp -EEEEE----E-TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred CCCEEe----eeCCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 677763 22355567799999998754 444555555555444432221 1222233332332221 11
Q ss_pred hcccCCCCccceEEEEEEeCCeEEEEecccCeEEEE-ecCceeecCCCCCChhHHHHHHHcCCeEEcCCCCCCccCCccc
Q 026594 71 NSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVC-ERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLA 149 (236)
Q Consensus 71 ~~~~~~~~~~tt~~~~~i~~~~~~~a~vGDsr~~~~-~~~~~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~~~~~~~ 149 (236)
........++||++++++.++.++++|+||||+|++ +++++..++.+|+.... .
T Consensus 89 ~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~-------------------------~ 143 (212)
T PF13672_consen 89 QADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYP-------------------------N 143 (212)
T ss_dssp HHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHHH-------------------------H
T ss_pred hccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchhh-------------------------h
Confidence 112234677899999999999999999999999765 78999999998862110 1
Q ss_pred ccccccCcCCccCcccCceEEEEEeCCCCeEEEEeeCCCcCCCCHHH-HHhcccc
Q 026594 150 VARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKVMKNQE-AVDLVKP 203 (236)
Q Consensus 150 ~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~liL~SDGv~d~l~~~~-i~~~~~~ 203 (236)
.++.+..... ....++..+++.++ +.|+|||||+|+.+...+ +..++..
T Consensus 144 ~~~~~~~~~~----~~~~~~~~~~~~~~-d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 144 QTRSLTGDDP----EPDVQYGSIPLEEG-DVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp CTTSCCHHCC----CTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred hhhccCcccc----ccCCeEEEEEcCCC-CEEEEECcCccccCCCHHHHHHHhhh
Confidence 1222222110 23457777888888 999999999999998654 6666655
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.74 E-value=3.4e-16 Score=143.44 Aligned_cols=175 Identities=18% Similarity=0.158 Sum_probs=127.8
Q ss_pred CcceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHHhcccCCCCccceEEEEEEe--CC
Q 026594 14 NHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVID--GK 91 (236)
Q Consensus 14 ~~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~tt~~~~~i~--~~ 91 (236)
+++...++|+||+|++..|...+..+.+.+.+......+ ...+++.+|+.+..... ....+|+.++.++ .+
T Consensus 577 ~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~lN~~L~~~~~---~~~faTl~l~~IDl~~g 649 (764)
T TIGR02865 577 SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTVNSILSLRST---DEKFSTLDLSVIDLYTG 649 (764)
T ss_pred CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCC---CCeEEEEEEEEEECCCC
Confidence 345678999999999888877766665555432222222 35577888887765422 2346787777775 67
Q ss_pred eEEEEecccCeEEEEecCceeecCCCCCChhHHHHHHHcCCeEEcCCCCCCccCCcccccccccCcCCccCcccCceEEE
Q 026594 92 DLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRH 171 (236)
Q Consensus 92 ~~~~a~vGDsr~~~~~~~~~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~ 171 (236)
++.++++|+++.|+.|+++..+++..+. .+|... ..+++..+
T Consensus 650 ~~~~~~aG~~p~~i~r~~~v~~i~s~~l---------------------------------PlGil~-----~~~~~~~~ 691 (764)
T TIGR02865 650 QAEFVKVGAVPSFIKRGAKVEVIRSSNL---------------------------------PIGILD-----EVDVELVR 691 (764)
T ss_pred eEEEEecCCCceEEEECCEEEEecCCCc---------------------------------eeEecc-----CCccceEE
Confidence 9999999999999999988777754321 133322 34677788
Q ss_pred EEeCCCCeEEEEeeCCCcCCCCHHH-----HHhcccc--CCCHHHHHHHHHHHHHHcC---CCCCcEEEEEEe
Q 026594 172 VPIDPSIEFLILASDGLWKVMKNQE-----AVDLVKP--IKDPQAAAKRLTTEALARK---SKDDISCIVIRF 234 (236)
Q Consensus 172 ~~l~~~~d~liL~SDGv~d~l~~~~-----i~~~~~~--~~~~~~~a~~l~~~a~~~~---~~DN~Tvivv~~ 234 (236)
.++.+| |.|+|+|||++|..++.+ +.+++++ ..+|+++++.|++.+.... ..||+|++++++
T Consensus 692 ~~L~~G-D~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 692 KKLKNG-DLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred EEeCCC-CEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 999999 999999999999876433 6666654 3589999999999998653 479999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.71 E-value=3.5e-15 Score=115.83 Aligned_cols=176 Identities=18% Similarity=0.183 Sum_probs=120.1
Q ss_pred cceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHHhcccCCCCccceEEEEEEe--CCe
Q 026594 15 HVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVID--GKD 92 (236)
Q Consensus 15 ~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~tt~~~~~i~--~~~ 92 (236)
++..+++|+|+.|.+-.|...+..+...+......... ..+.+..+|+.+....... ...+|++++.++ .+.
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~ 75 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGT 75 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceE
Confidence 56789999999998877777776666665444322233 5556777777775544432 244556666654 568
Q ss_pred EEEEecccCeEEEEecCc--eeecCCCCCChhHHHHHHHcCCeEEcCCCCCCccCCcccccccccCcCCccCcccCceEE
Q 026594 93 LWVANVGDSRAVVCERGS--ANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVR 170 (236)
Q Consensus 93 ~~~a~vGDsr~~~~~~~~--~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~ 170 (236)
++++|+|+++++++++++ ...+.. ....+|... ...+...
T Consensus 76 l~~~~aG~~~~l~~~~~~~~~~~~~~---------------------------------~~~~lG~~~-----~~~~~~~ 117 (193)
T PF07228_consen 76 LTYANAGHPPPLLLRPGGREIEQLES---------------------------------EGPPLGIFE-----DIDYQEQ 117 (193)
T ss_dssp EEEEEESSSEEEEEETTCTEEEEETC---------------------------------SSBBCSSSC-----TTCEEEE
T ss_pred EEEeCCCCCCEEEEeccccceeeccc---------------------------------Cccceeeec-----cccccce
Confidence 999999999999999842 222221 112255544 3567778
Q ss_pred EEEeCCCCeEEEEeeCCCcCCCCHH-------HHHhcccc--CCCHHHHHHHHHHHHHHc---CCCCCcEEEEEEeC
Q 026594 171 HVPIDPSIEFLILASDGLWKVMKNQ-------EAVDLVKP--IKDPQAAAKRLTTEALAR---KSKDDISCIVIRFG 235 (236)
Q Consensus 171 ~~~l~~~~d~liL~SDGv~d~l~~~-------~i~~~~~~--~~~~~~~a~~l~~~a~~~---~~~DN~Tvivv~~~ 235 (236)
++++.+| |.|+|+|||+++....+ .+.+.+.+ ..++++.++.|++.+... ...||+|+++++++
T Consensus 118 ~~~l~~g-d~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 118 EIQLEPG-DRLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp EEE--TT-EEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred EEEeccc-cEEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 8999999 99999999999988433 34566653 367999999999999873 46799999999975
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.98 E-value=1.5e-07 Score=80.35 Aligned_cols=175 Identities=14% Similarity=0.126 Sum_probs=120.7
Q ss_pred cceEEEEEEcCCCCChHHHHHHHHHHHHHHhccCC-CcCHHHHHHHHHHHHHHHHHHhcccCCCCccceEEEEEEe--CC
Q 026594 15 HVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNF-WKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVID--GK 91 (236)
Q Consensus 15 ~~~~l~~V~DG~gg~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~tt~~~~~i~--~~ 91 (236)
.....++|+|..|.+-.|...+......+...... ..++. ..++.+|+.+....... ..+|+...+++ ..
T Consensus 173 ~~~~~i~I~DvsG~Gv~aal~m~~~~~~~~~~~~~~~~~p~----~~l~~~n~~~~~~~~~~---~f~T~~~~~~d~~~~ 245 (367)
T COG2208 173 EKRLRIGIGDVSGKGVPAALLMLMPKLALRLLLESGPLDPA----DVLETLNRVLKQNLEED---MFVTLFLGVYDLDSG 245 (367)
T ss_pred CcEEEEEEEeccCCCHHHHHHHHHHHHHHHHhhhcccCCHH----HHHHHHHHHHHhcccCC---cEEEEEEEEEeccCC
Confidence 36788999999997655555544333333332222 23333 35566666666554432 55666666665 67
Q ss_pred eEEEEecccCeEEEEecCce---eecCCCCCChhHHHHHHHcCCeEEcCCCCCCccCCcccccccccCcCCccCcccCce
Q 026594 92 DLWVANVGDSRAVVCERGSA---NQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPD 168 (236)
Q Consensus 92 ~~~~a~vGDsr~~~~~~~~~---~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~~~~~~~~t~~lG~~~~~~~~~~~~~ 168 (236)
.+.++++|---.++++.++- ..+. .....+|..+ ...+.
T Consensus 246 ~l~y~~aGH~p~~i~~~~~~~~~~~l~---------------------------------~~g~piG~~~-----~~~~~ 287 (367)
T COG2208 246 ELTYSNAGHEPALILSADGEIEVEDLT---------------------------------ALGLPIGLLP-----DYQYE 287 (367)
T ss_pred EEEEeeCCCCCeeEEEcCCCceeEEcc---------------------------------CCCceeeecC-----Cccch
Confidence 89999999999998886532 2111 3455667665 56777
Q ss_pred EEEEEeCCCCeEEEEeeCCCcC-------CCCHHHHHhcccc--CCCHHHHHHHHHHHHHHcC----CCCCcEEEEEEeC
Q 026594 169 VRHVPIDPSIEFLILASDGLWK-------VMKNQEAVDLVKP--IKDPQAAAKRLTTEALARK----SKDDISCIVIRFG 235 (236)
Q Consensus 169 ~~~~~l~~~~d~liL~SDGv~d-------~l~~~~i~~~~~~--~~~~~~~a~~l~~~a~~~~----~~DN~Tvivv~~~ 235 (236)
.....+.+| |.++|.|||+.+ .+..+...+++.. ..+++++++.+.+...... ..||+|++++++.
T Consensus 288 ~~~~~l~~g-d~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 288 VASLQLEPG-DLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred heeEEecCC-CEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 888999998 999999999998 5667777777763 3688999999988887643 3588999999985
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=73.03 E-value=45 Score=27.61 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=52.2
Q ss_pred cceEEEEEEcC--CCCC-hHHHHHHHHHHHHHHhccC-CCcCHHHHHHHHHHHHHHHHHHhcccCCCCccceEEEEEEe-
Q 026594 15 HVLGLFAIFDG--HLGD-RVPTYLKDNLFNNILEESN-FWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVID- 89 (236)
Q Consensus 15 ~~~~l~~V~DG--~gg~-~~a~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~tt~~~~~i~- 89 (236)
++...|.++|= ||+. -.|......++..+++... ..........+.+..+|+.+....... . -|+.+++++
T Consensus 161 ~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~---~-~t~~~~~~d~ 236 (303)
T PRK10693 161 DNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPG---Q-FPLLVGYYHR 236 (303)
T ss_pred CCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCc---e-eeEEEEEEEc
Confidence 44556667775 4433 4555666665665555421 000000114557778888877763221 1 345555554
Q ss_pred -CCeEEEEecccCeEEEEecCce
Q 026594 90 -GKDLWVANVGDSRAVVCERGSA 111 (236)
Q Consensus 90 -~~~~~~a~vGDsr~~~~~~~~~ 111 (236)
.+.+.+++.|-...++..++++
T Consensus 237 ~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 237 ELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred CCCeEEEEeCCCCCEEecCCeEE
Confidence 5689999999999875444433
No 21
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=63.89 E-value=3.8 Score=27.69 Aligned_cols=50 Identities=20% Similarity=0.395 Sum_probs=33.2
Q ss_pred eCCCCeEEEEeeCCCcCCCCHHHHHhccccCCCHHHHHHHHHHHHHHcCCCCCc
Q 026594 174 IDPSIEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDI 227 (236)
Q Consensus 174 l~~~~d~liL~SDGv~d~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~~~~DN~ 227 (236)
+.++ |-++|+.|||+-.+...+..+-+.. +| ..+-.|.+-...||-.+.+
T Consensus 22 l~~~-D~vlL~qdGV~aAl~~~~~~~sl~~--~p-~~~~alkeDl~ARGl~~~~ 71 (96)
T COG2168 22 LTEG-DAVLLLQDGVYAALKGNRYLASLRE--SP-IKVYALKEDLLARGLTGQI 71 (96)
T ss_pred hccc-CeEEEEcccchhhhcCcHHHHHHhc--Cc-cceeeehhhHHhccchhhc
Confidence 3556 8899999999998888777666665 22 3344455666666644433
No 22
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=52.00 E-value=9.6 Score=24.36 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=13.5
Q ss_pred CCCeEEEEeeCCCcCCCC
Q 026594 176 PSIEFLILASDGLWKVMK 193 (236)
Q Consensus 176 ~~~d~liL~SDGv~d~l~ 193 (236)
+| ..+++++||+|=-+.
T Consensus 26 ~G-~Rllva~nGv~lEv~ 42 (72)
T PF09436_consen 26 PG-HRLLVASNGVFLEVR 42 (72)
T ss_pred CC-cEEEEecCcEEEEEe
Confidence 56 899999999995443
No 23
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=37.94 E-value=55 Score=25.15 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=30.2
Q ss_pred CeEEEEeeCCCcC-----------CCCHHHHHhcccc----CCCHHHHHHHHHHHHHHcC
Q 026594 178 IEFLILASDGLWK-----------VMKNQEAVDLVKP----IKDPQAAAKRLTTEALARK 222 (236)
Q Consensus 178 ~d~liL~SDGv~d-----------~l~~~~i~~~~~~----~~~~~~~a~~l~~~a~~~~ 222 (236)
+|.++..|.|+|. +|-+...=+.+.. ..=|.+.|+.|++.-.+++
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 3778999999994 3333333233322 2458899999999888765
No 24
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=36.83 E-value=59 Score=16.17 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=15.4
Q ss_pred eCCeEEEEecccCeEEEE
Q 026594 89 DGKDLWVANVGDSRAVVC 106 (236)
Q Consensus 89 ~~~~~~~a~vGDsr~~~~ 106 (236)
.++.+|++-.|+.|+.++
T Consensus 11 ~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 11 SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp TTSEEEEEECCCTEEEEE
T ss_pred CCCCEEEEECCCCEEEEC
Confidence 788999999999988764
No 25
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=25.49 E-value=1.4e+02 Score=19.54 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=26.2
Q ss_pred CCCHHHHHhccccCCCHHHHHHHHHHHHHHcC
Q 026594 191 VMKNQEAVDLVKPIKDPQAAAKRLTTEALARK 222 (236)
Q Consensus 191 ~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~~ 222 (236)
.|+.+|+..+........+.|+.|++....+|
T Consensus 30 Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~KG 61 (83)
T cd08325 30 VLNEEEMEKIKEENNTIMDKARVLVDSVTEKG 61 (83)
T ss_pred CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 57888888888765668999999999888765
No 26
>COG5518 Bacteriophage capsid portal protein [General function prediction only]
Probab=21.82 E-value=48 Score=28.42 Aligned_cols=133 Identities=22% Similarity=0.306 Sum_probs=72.7
Q ss_pred EeCCeEEEEecccCeEEEEecCceeecCCCCCChhHHHHHHHcCCeEEcCCCCCCccCCcccccccccCcCCccCcccCc
Q 026594 88 IDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEP 167 (236)
Q Consensus 88 i~~~~~~~a~vGDsr~~~~~~~~~~~lt~dh~~~~e~~r~~~~g~~~~~~~~~~~~~~~~~~~t~~lG~~~~~~~~~~~~ 167 (236)
|+.+++|+..-||-|.|=++.|.....+.-....+|..-.+- |...-. .|+.-+ .+...+|.... -
T Consensus 190 ID~k~v~FkeyGdpr~~d~~~G~yv~~~~le~~ane~ih~kI-gs~~YG----~Prwig--~ivslygarkA-------e 255 (492)
T COG5518 190 IDLKTVWFKEYGDPRPYDFTTGNYVSMFHLEEPANEDIHQKI-GSGAYG----LPRWIG--AIVSLYGARKA-------E 255 (492)
T ss_pred eccceEEEEecCCCcceeeccCccchhhhhhcchhhhHHHhh-cccccC----chHHHH--HHHHHHhhhhH-------H
Confidence 456789999999999999999966555544444443221111 100000 011110 11122222110 0
Q ss_pred eEEEEEeCCC--CeEEEEeeCCCcCCCCHHHHHhccccCCCHHHHHHHHHHHHHHcC-----CCCCcEEEEEEe
Q 026594 168 DVRHVPIDPS--IEFLILASDGLWKVMKNQEAVDLVKPIKDPQAAAKRLTTEALARK-----SKDDISCIVIRF 234 (236)
Q Consensus 168 ~~~~~~l~~~--~d~liL~SDGv~d~l~~~~i~~~~~~~~~~~~~a~~l~~~a~~~~-----~~DN~Tvivv~~ 234 (236)
.+...-..+| --++|-++||..+-=+-..+.+.+...+.+..+-+.|+-++.... ...|+|-+-|.+
T Consensus 256 eln~~YfknGrH~paai~~~~g~l~e~~y~~L~eyMk~~~g~eNa~~flm~e~~G~~~kn~hgd~~i~~vkV~I 329 (492)
T COG5518 256 ELNRMYFKNGRHAPAAIYMTDGALSEEDYNNLREYMKSAKGPENARNFLMYEPNGKKIKNAHGDGNISPVKVQI 329 (492)
T ss_pred HHHHHHHhcCccCceEEEecccccchHHHHHHHHHHhhcCCchhhhhheeeccCCeeccccCCCCCcCceeEEe
Confidence 0111111222 257889999998888888889998887788777777665554321 235666665554
No 27
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=21.53 E-value=1.4e+02 Score=15.68 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=15.1
Q ss_pred CCeEEEEecccCeEEEEec
Q 026594 90 GKDLWVANVGDSRAVVCER 108 (236)
Q Consensus 90 ~~~~~~a~vGDsr~~~~~~ 108 (236)
++.+|+++-|+..+.++.-
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 4578999998888888853
No 28
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=21.08 E-value=2.7e+02 Score=20.27 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=9.7
Q ss_pred eEEEEeeCCCcC
Q 026594 179 EFLILASDGLWK 190 (236)
Q Consensus 179 d~liL~SDGv~d 190 (236)
..+||.|||..+
T Consensus 105 k~iillTDG~~~ 116 (164)
T cd01482 105 KVVILITDGKSQ 116 (164)
T ss_pred EEEEEEcCCCCC
Confidence 678899999853
No 29
>PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A ....
Probab=20.96 E-value=1.9e+02 Score=17.66 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=20.4
Q ss_pred EEEeCCeEEEEecccCeEEEEecCceee
Q 026594 86 IVIDGKDLWVANVGDSRAVVCERGSANQ 113 (236)
Q Consensus 86 ~~i~~~~~~~a~vGDsr~~~~~~~~~~~ 113 (236)
++..+..+|.|.+++.-+..+.++.+.+
T Consensus 13 I~~Ae~d~YaA~Id~kv~~KiGp~~~~P 40 (59)
T PF07821_consen 13 ILAAEADLYAAIIDDKVIMKIGPRDWSP 40 (59)
T ss_dssp EEEEETTEEEEEETTTEEEEESS-GGS-
T ss_pred EEEecCCcEEEEECCeEEEEECCCcccc
Confidence 3455889999999998888887774443
Done!