BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026596
         (236 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GZA8|ULT1_ARATH Protein ULTRAPETALA 1 OS=Arabidopsis thaliana GN=ULT1 PE=1 SV=1
          Length = 237

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 170/225 (75%), Positives = 195/225 (86%)

Query: 12  MMFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNED 71
           M+F  EEL+E+SGV  GGDY+EV CGCTSHRYGDAV RLRVF  GDLEITCECTPGC+ED
Sbjct: 13  MLFKQEELQEMSGVNVGGDYVEVMCGCTSHRYGDAVARLRVFPTGDLEITCECTPGCDED 72

Query: 72  KMTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKHGNGSHRSHNGR 131
           K+TP AFEKHSGRETARKWKNNVWVI  GEKVPLSKTVLLKYYN++SK  + S+RS   +
Sbjct: 73  KLTPAAFEKHSGRETARKWKNNVWVIIGGEKVPLSKTVLLKYYNESSKKCSRSNRSQGAK 132

Query: 132 VCHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDDEEERASR 191
           VCHRDEFV C  C KERRFRLR+++EC +HHNA+ D NWKCSD PYDKITC++EEER SR
Sbjct: 133 VCHRDEFVGCNDCGKERRFRLRSRDECRLHHNAMGDPNWKCSDFPYDKITCEEEEERGSR 192

Query: 192 RVYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAKT 236
           +VYRGC RSP+CKGCTSCVCFGC++CRFS+C+CQTC+DFT N K 
Sbjct: 193 KVYRGCTRSPSCKGCTSCVCFGCELCRFSECTCQTCVDFTSNVKA 237


>sp|Q8S8I2|ULT2_ARATH Protein ULTRAPETALA 2 OS=Arabidopsis thaliana GN=ULT2 PE=2 SV=1
          Length = 228

 Score =  333 bits (854), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 187/223 (83%), Gaps = 6/223 (2%)

Query: 13  MFSDEELREISGVKRGGDYIEVTCGCTSHRYGDAVGRLRVFSNGDLEITCECTPGCNEDK 72
           +FS EEL+EISGV  G DY+EV CGCTSHRYGDAV RL++FS+G+L+ITC+CTP C EDK
Sbjct: 10  LFSKEELQEISGVHVGDDYVEVMCGCTSHRYGDAVARLKIFSDGELQITCQCTPACLEDK 69

Query: 73  MTPGAFEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKHGNGSHRSHNGRV 132
           +TP AFEKHS RET+R W+NNVWV   G+KVPLSKTVLL+YYN+A K+ N S      +V
Sbjct: 70  LTPAAFEKHSERETSRNWRNNVWVFIEGDKVPLSKTVLLRYYNKALKNSNVS------KV 123

Query: 133 CHRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKITCDDEEERASRR 192
            HRDEFV C+ C KERRFRLR++ EC +HH+A+A+ NWKC D PYDKITC++EEER SR+
Sbjct: 124 IHRDEFVGCSTCGKERRFRLRSRGECRMHHDAIAEPNWKCCDYPYDKITCEEEEERGSRK 183

Query: 193 VYRGCIRSPTCKGCTSCVCFGCDICRFSDCSCQTCIDFTRNAK 235
           V+RGC RSP+CKGCTSCVCFGC +CRFSDC+CQTC+DFT NAK
Sbjct: 184 VFRGCTRSPSCKGCTSCVCFGCKLCRFSDCNCQTCLDFTTNAK 226


>sp|Q2LQA9|RL24_SYNAS 50S ribosomal protein L24 OS=Syntrophus aciditrophicus (strain SB)
           GN=rplX PE=3 SV=1
          Length = 106

 Score = 34.7 bits (78), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 82  SGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKHGNGSHRSHNGRVCHRDEFVRC 141
           SGRE  +  K  + VI+   +V + K  ++K + +A+  G G      G +   +  + C
Sbjct: 16  SGREKGKTGKV-LTVISEKNRVVIEKMNMVKRHQKANAMGKGGIVEKEGPIHASNVMMMC 74

Query: 142 ARCNKERRFRLRTKEE 157
            +CNKE R  ++  E+
Sbjct: 75  GKCNKETRVGIKKLED 90


>sp|Q8G7G5|SYC_BIFLO Cysteine--tRNA ligase OS=Bifidobacterium longum (strain NCC 2705)
           GN=cysS PE=3 SV=1
          Length = 546

 Score = 32.3 bits (72), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 24/118 (20%)

Query: 24  GVKRGGDYIEVTCGCTSHRY-GDAV----GRLRV-FSNGDLEITCECTPGCNEDKMTPGA 77
           GV R G +IE  C   SHRY GD      G L + F + + E+   C             
Sbjct: 260 GVGRPGWHIE--CSAMSHRYLGDGFDIHGGGLDLRFPHHENEMAQTCA------------ 305

Query: 78  FEKHSGRETARKWKNNVWVIANGEKVPLSKTVLLKYYNQASKHGNGSHRSHNGRVCHR 135
               +G  +A +W ++ WV A GEK+  S    L   +  ++H     R   G V +R
Sbjct: 306 ----AGYPSAARWMHSAWVTAKGEKMSKSLGTGLSVPSVLAEHSAWVVRYALGSVQYR 359


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,058,000
Number of Sequences: 539616
Number of extensions: 4116453
Number of successful extensions: 8917
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8902
Number of HSP's gapped (non-prelim): 23
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)