Query 026596
Match_columns 236
No_of_seqs 35 out of 37
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 17:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqj_A Glucocorticoid modulato 92.8 0.019 6.5E-07 44.7 -0.1 44 72-119 42-88 (97)
2 1h5p_A Nuclear autoantigen SP1 91.4 0.029 9.9E-07 43.7 -0.5 25 72-96 44-68 (95)
3 1ufn_A Putative nuclear protei 90.8 0.045 1.5E-06 42.5 -0.1 26 71-96 48-73 (94)
4 2e61_A Zinc finger CW-type PWW 90.5 0.22 7.7E-06 36.1 3.5 50 131-187 11-63 (69)
5 2l7p_A Histone-lysine N-methyl 83.5 0.2 6.9E-06 38.9 -0.2 48 134-187 24-72 (100)
6 1x3x_A Cytochrome B5; hemoprot 38.5 14 0.00047 26.3 1.7 30 69-105 2-31 (82)
7 1cxy_A Cytochrome B5; helix, b 32.3 23 0.00079 25.6 2.1 27 72-105 9-35 (90)
8 2ibj_A Cytochrome B5, CYTB5; F 29.2 23 0.00077 25.4 1.6 28 71-105 7-34 (88)
9 1cyo_A Cytochrome B5; electron 28.4 24 0.00081 25.8 1.6 24 72-102 6-29 (93)
10 3ner_A Cytochrome B5 type B; h 27.5 30 0.001 25.3 2.0 32 67-105 6-37 (92)
11 3lf5_A Cytochrome B5 reductase 25.6 28 0.00095 25.3 1.5 27 72-105 7-33 (88)
12 1hko_A Cytochrome B5; electron 24.6 32 0.0011 25.8 1.7 24 72-102 10-33 (104)
13 1mj4_A Sulfite oxidase; cytoch 23.4 33 0.0011 24.3 1.5 24 72-101 6-29 (82)
14 2glw_A PHS018, 92AA long hypot 22.0 44 0.0015 24.8 2.0 40 16-60 20-64 (92)
No 1
>1oqj_A Glucocorticoid modulatory element binding protein-1; SAND domain, alpha-beta fold, KDWK motif, zinc-binding motif, DNA binding protein; 1.55A {Homo sapiens} SCOP: d.217.1.1
Probab=92.81 E-value=0.019 Score=44.69 Aligned_cols=44 Identities=20% Similarity=0.537 Sum_probs=31.8
Q ss_pred CCChhhhhhccccccccccccceEEEeCCccccc---chhhHHHHhhhhhc
Q 026596 72 KMTPGAFEKHSGRETARKWKNNVWVIANGEKVPL---SKTVLLKYYNQASK 119 (236)
Q Consensus 72 kltp~aFEkHs~reta~kWkn~vWV~~~~~kvpL---~kT~LlkyY~~~~~ 119 (236)
=+||.+||..+||++++.||..|=+ +| .|| -+--+|.+|.|...
T Consensus 42 w~TP~EFe~~~gk~~sKdWK~sIR~--~G--~~L~~Lme~g~L~~~~h~~~ 88 (97)
T 1oqj_A 42 LISPKHFVHLAGKSTLKDWKRAIRL--GG--IMLRKMMDSGQIDFYQHDKV 88 (97)
T ss_dssp EECHHHHHHHTTCGGGSCHHHHSEE--TT--EEHHHHHHTTSSCCTTTTTC
T ss_pred EEChHHHhhhcCcCCCCCcchheEE--CC--eEHHHHHHCCcccccCcCCc
Confidence 4799999999999999999999853 44 333 23455666666543
No 2
>1h5p_A Nuclear autoantigen SP100-B; transcription, DNA binding, SAND domain, KDWK, nuclear protein, alternative splicing; NMR {Homo sapiens} SCOP: d.217.1.1
Probab=91.40 E-value=0.029 Score=43.66 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=22.7
Q ss_pred CCChhhhhhccccccccccccceEE
Q 026596 72 KMTPGAFEKHSGRETARKWKNNVWV 96 (236)
Q Consensus 72 kltp~aFEkHs~reta~kWkn~vWV 96 (236)
=+||.+||..+|++++..||..|-+
T Consensus 44 w~TP~EFe~~~g~~~sKdWKrSIR~ 68 (95)
T 1h5p_A 44 WFTPREFEIEGDRGASKNWKLSIRC 68 (95)
T ss_dssp EECHHHHHHHHTCSTTCCHHHHCEE
T ss_pred EEChHHhhhhcCcccCcCcceeeEE
Confidence 3799999999999999999999854
No 3
>1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1
Probab=90.75 E-value=0.045 Score=42.51 Aligned_cols=26 Identities=31% Similarity=0.573 Sum_probs=23.9
Q ss_pred CCCChhhhhhccccccccccccceEE
Q 026596 71 DKMTPGAFEKHSGRETARKWKNNVWV 96 (236)
Q Consensus 71 dkltp~aFEkHs~reta~kWkn~vWV 96 (236)
.-+||.+||..+|++++..||..|-+
T Consensus 48 ~w~TP~EFe~~~g~~~sKdWKrSIr~ 73 (94)
T 1ufn_A 48 DWLTVKEFLNEGGRATSKDWKGVIRC 73 (94)
T ss_dssp CEECHHHHHHHHTCTTCSCHHHHCEE
T ss_pred cEEChHHhhhhcCcccccCcceeeEE
Confidence 35899999999999999999999876
No 4
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=90.48 E-value=0.22 Score=36.12 Aligned_cols=50 Identities=26% Similarity=0.465 Sum_probs=34.0
Q ss_pred ccccccceeeec--cccccccccccChhHHhhhhhhhcCCCcccCCCCCCcc-ccCcHHH
Q 026596 131 RVCHRDEFVRCA--RCNKERRFRLRTKEECLIHHNALADKNWKCSDLPYDKI-TCDDEEE 187 (236)
Q Consensus 131 r~~HRDEFvrCt--~CgKeRRFrLrsk~ecr~yHdAl~~~~WtCsd~py~ki-tCdDdEE 187 (236)
.+-+-+.+|.|. .|+|=||+.+..-+. .....|+|++.|.... .|+..||
T Consensus 11 ~~~~~~~WVQCd~p~C~KWR~LP~~~~~~-------~lpd~W~C~mN~d~~~~~Cs~pEE 63 (69)
T 2e61_A 11 GFGQCLVWVQCSFPNCGKWRRLCGNIDPS-------VLPDNWSCDQNTDVQYNRCDIPEE 63 (69)
T ss_dssp SCCCCCCEEECSSTTTCCEEECCSSCCTT-------TSCTTCCGGGCSCGGGCSSSSCCC
T ss_pred CCCCCCeEEEeCccccCcccCCccccccc-------cCCCcCEeCCCCCCccCCCCCCcc
Confidence 445778999999 999999998765331 1235899999873222 2554443
No 5
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=83.49 E-value=0.2 Score=38.94 Aligned_cols=48 Identities=23% Similarity=0.450 Sum_probs=32.9
Q ss_pred cccceeeeccccccccccccChhHHhhhhhhhcCCCcccCCCCC-CccccCcHHH
Q 026596 134 HRDEFVRCARCNKERRFRLRTKEECLIHHNALADKNWKCSDLPY-DKITCDDEEE 187 (236)
Q Consensus 134 HRDEFvrCt~CgKeRRFrLrsk~ecr~yHdAl~~~~WtCsd~py-~kitCdDdEE 187 (236)
.-+.+|.|..|.|=||+....-+... ....|+|+.-|. ..-.|+..||
T Consensus 24 ~~~~WVQCD~C~KWRrLP~~~~~~~~------~pd~W~C~mN~D~~~nsCs~PEE 72 (100)
T 2l7p_A 24 TESAWVRCDDCFKWRRIPASVVGSID------ESSRWICMNNSDKRFADCSKSQE 72 (100)
T ss_dssp SSSEEEECTTTCCEEEECHHHHTTST------TSSCCCGGGSSCSSSCSTTSCCS
T ss_pred CCCeEEeeCCCCccccCChhHccccC------CCCCceeCCCCCCCCCCCCCccC
Confidence 46789999999999998754321111 147899999874 2345875554
No 6
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=38.52 E-value=14 Score=26.30 Aligned_cols=30 Identities=27% Similarity=0.591 Sum_probs=22.2
Q ss_pred CCCCCChhhhhhccccccccccccceEEEeCCccccc
Q 026596 69 NEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPL 105 (236)
Q Consensus 69 ~~dkltp~aFEkHs~reta~kWkn~vWV~~~~~kvpL 105 (236)
..-.+|+++..+|.+.+ ..||+|+|.---+
T Consensus 2 ~~~~~t~~ev~~h~~~~-------~~wv~i~g~VYDv 31 (82)
T 1x3x_A 2 GDKKYTKEEVAKHNTQN-------DLWIIYDGEVHDM 31 (82)
T ss_dssp CSCEECHHHHHTCEETT-------EEEEEETTEEEEC
T ss_pred CCCccCHHHHHhhCCCC-------CEEEEECCEEEEC
Confidence 34458999999998754 4899999964433
No 7
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=32.34 E-value=23 Score=25.60 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=20.9
Q ss_pred CCChhhhhhccccccccccccceEEEeCCccccc
Q 026596 72 KMTPGAFEKHSGRETARKWKNNVWVIANGEKVPL 105 (236)
Q Consensus 72 kltp~aFEkHs~reta~kWkn~vWV~~~~~kvpL 105 (236)
.+|+++..+|.+. +.+||+|+|.-.-+
T Consensus 9 ~~t~~Ev~~h~~~-------~~~wv~i~g~VYDv 35 (90)
T 1cxy_A 9 VFTLEQVAEHHSP-------DDCWMAIHGKVYDL 35 (90)
T ss_dssp BCCHHHHTTCEET-------TEEEEEETTEEEEC
T ss_pred CcCHHHHHHhcCC-------CCEEEEECCEEEEC
Confidence 4799999999874 46999999964333
No 8
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=29.19 E-value=23 Score=25.40 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=21.3
Q ss_pred CCCChhhhhhccccccccccccceEEEeCCccccc
Q 026596 71 DKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPL 105 (236)
Q Consensus 71 dkltp~aFEkHs~reta~kWkn~vWV~~~~~kvpL 105 (236)
-.+|+++..+|.+. +.+||+|+|.-.-+
T Consensus 7 ~~~t~~ev~~h~~~-------~~~wv~i~g~VYDv 34 (88)
T 2ibj_A 7 KYFTRAEVAKNNTK-------DKNWFIIHNNVYDV 34 (88)
T ss_dssp CEECHHHHHTSEET-------TEEEEEETTEEEEC
T ss_pred CccCHHHHHHhCCC-------CCEEEEECCEEEEC
Confidence 34799999999863 57999999964433
No 9
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=28.38 E-value=24 Score=25.81 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=19.2
Q ss_pred CCChhhhhhccccccccccccceEEEeCCcc
Q 026596 72 KMTPGAFEKHSGRETARKWKNNVWVIANGEK 102 (236)
Q Consensus 72 kltp~aFEkHs~reta~kWkn~vWV~~~~~k 102 (236)
.+|+++..+|... +..||+|+|.-
T Consensus 6 ~~t~~Ev~~h~~~-------~~~wv~i~g~V 29 (93)
T 1cyo_A 6 YYTLEEIQKHNNS-------KSTWLILHYKV 29 (93)
T ss_dssp EECHHHHTTCEET-------TEEEEEETTEE
T ss_pred ccCHHHHHhhCCC-------CCEEEEECCEE
Confidence 3689999999864 36999999953
No 10
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=27.52 E-value=30 Score=25.32 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCCCCCCChhhhhhccccccccccccceEEEeCCccccc
Q 026596 67 GCNEDKMTPGAFEKHSGRETARKWKNNVWVIANGEKVPL 105 (236)
Q Consensus 67 gC~~dkltp~aFEkHs~reta~kWkn~vWV~~~~~kvpL 105 (236)
.-++-.+|+++..+|.+. +..||+|+|.-.-+
T Consensus 6 ~~~~~~~t~~Ev~~h~~~-------~~~wv~i~g~VYDv 37 (92)
T 3ner_A 6 ETSVTYYRLEEVAKRNSL-------KELWLVIHGRVYDV 37 (92)
T ss_dssp CCCSCEECHHHHTTCEET-------TEEEEEETTEEEEC
T ss_pred CCCCCeeCHHHHHhhCCC-------CCEEEEECCEEEEc
Confidence 334556899999999875 46999999854434
No 11
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=25.61 E-value=28 Score=25.33 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=20.6
Q ss_pred CCChhhhhhccccccccccccceEEEeCCccccc
Q 026596 72 KMTPGAFEKHSGRETARKWKNNVWVIANGEKVPL 105 (236)
Q Consensus 72 kltp~aFEkHs~reta~kWkn~vWV~~~~~kvpL 105 (236)
.+|+++..+|.++ +..||+|+|.---+
T Consensus 7 ~~t~~Ev~~h~~~-------~~~wv~i~g~VYDv 33 (88)
T 3lf5_A 7 EVTEEELKKHNKK-------DDCWICIRGFVYNV 33 (88)
T ss_dssp EECHHHHHHCEET-------TEEEEEETTEEEEC
T ss_pred EeCHHHHHhhCCC-------CCEEEEECCEEEEC
Confidence 3688999999875 47899999854444
No 12
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=24.65 E-value=32 Score=25.83 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=19.3
Q ss_pred CCChhhhhhccccccccccccceEEEeCCcc
Q 026596 72 KMTPGAFEKHSGRETARKWKNNVWVIANGEK 102 (236)
Q Consensus 72 kltp~aFEkHs~reta~kWkn~vWV~~~~~k 102 (236)
.+|+++..+|... +.+||+|+|.-
T Consensus 10 ~~t~~Ev~~h~~~-------~~~wv~i~g~V 33 (104)
T 1hko_A 10 YYTLEEIQKHNNS-------KSTWLILHYKV 33 (104)
T ss_dssp EECHHHHHHCBSS-------SSBEEEETTEE
T ss_pred ccCHHHHHHhcCC-------CCEEEEECCEE
Confidence 3689999999864 35999999953
No 13
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=23.41 E-value=33 Score=24.34 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=17.8
Q ss_pred CCChhhhhhccccccccccccceEEEeCCc
Q 026596 72 KMTPGAFEKHSGRETARKWKNNVWVIANGE 101 (236)
Q Consensus 72 kltp~aFEkHs~reta~kWkn~vWV~~~~~ 101 (236)
.+|+++..+|...+. ..||+|+|.
T Consensus 6 ~~t~~ev~~h~~~~~------~~wv~i~g~ 29 (82)
T 1mj4_A 6 IYTKEEVSSHTSPET------GIWVTLGSE 29 (82)
T ss_dssp BCCCC-CTTCEETTT------EEEEEETTE
T ss_pred ccCHHHHHHhcCCCC------CeEEEECCE
Confidence 479999999986431 289999985
No 14
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=22.00 E-value=44 Score=24.76 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=26.4
Q ss_pred hHhHhhhhcceecCceEEEcccccceee-----cCcceeeEEeeCCeeeE
Q 026596 16 DEELREISGVKRGGDYIEVTCGCTSHRY-----GDAVGRLRVFSNGDLEI 60 (236)
Q Consensus 16 eEELr~i~gvk~GedyvEV~CGcTs~rY-----GD~VGRLri~~~G~~~I 60 (236)
..++|+.+|++.| |||+|- .-++ +......+|...||..|
T Consensus 20 P~~iR~~LgI~~G-D~V~v~----~i~~~~g~~~~~~~~~~v~~kGqitI 64 (92)
T 2glw_A 20 PAGTRKFYGIEQG-DFVEIK----IVKYEGEEPKEGTFTARVGEQGSVII 64 (92)
T ss_dssp CHHHHHHHTCCTT-CEEEEE----EEEEETTEEEEEEEEEECCGGGEEEC
T ss_pred cHHHHHHcCCCCC-CEEEEE----EEEecCCccceeEEEEEECcCceEEC
Confidence 4689999999988 689973 1111 23344567777777654
Done!