Query 026598
Match_columns 236
No_of_seqs 138 out of 617
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:06:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2922 Uncharacterized conser 100.0 1.1E-57 2.4E-62 404.2 10.5 236 1-236 15-250 (335)
2 PF05653 Mg_trans_NIPA: Magnes 100.0 2.1E-55 4.6E-60 394.8 18.5 236 1-236 1-236 (300)
3 COG2510 Predicted membrane pro 99.0 5E-09 1.1E-13 82.8 10.0 111 10-121 6-138 (140)
4 PRK02971 4-amino-4-deoxy-L-ara 99.0 3.7E-09 7.9E-14 84.3 9.3 114 8-121 3-121 (129)
5 PRK15051 4-amino-4-deoxy-L-ara 98.7 1.5E-07 3.2E-12 73.1 10.4 99 13-120 7-107 (111)
6 PF10639 UPF0546: Uncharacteri 98.7 2.4E-08 5.3E-13 77.7 5.6 105 16-120 5-112 (113)
7 PF13536 EmrE: Multidrug resis 98.6 2.4E-07 5.2E-12 71.5 8.5 68 56-124 41-108 (113)
8 TIGR03340 phn_DUF6 phosphonate 98.6 1.2E-05 2.6E-10 71.2 19.4 113 9-121 3-134 (281)
9 PRK10532 threonine and homoser 98.3 4.4E-06 9.6E-11 74.6 9.9 124 6-129 147-288 (293)
10 PRK10452 multidrug efflux syst 98.0 8.7E-05 1.9E-09 58.5 11.3 74 53-126 33-107 (120)
11 PLN00411 nodulin MtN21 family 98.0 3.1E-05 6.8E-10 71.6 10.1 123 5-127 187-333 (358)
12 TIGR00950 2A78 Carboxylate/Ami 98.0 0.00045 9.7E-09 59.7 16.3 68 55-122 52-119 (260)
13 TIGR00950 2A78 Carboxylate/Ami 98.0 8.5E-05 1.8E-09 64.3 10.9 114 4-117 125-259 (260)
14 PRK11453 O-acetylserine/cystei 98.0 0.0019 4.1E-08 57.8 19.8 112 10-121 7-131 (299)
15 PRK09541 emrE multidrug efflux 98.0 0.00011 2.3E-09 57.1 10.2 76 50-125 29-106 (110)
16 PF00892 EamA: EamA-like trans 97.9 5.2E-05 1.1E-09 57.6 7.5 66 55-120 59-124 (126)
17 PRK11272 putative DMT superfam 97.9 8.3E-05 1.8E-09 66.3 9.5 117 5-121 148-284 (292)
18 PRK15430 putative chlorampheni 97.9 4.8E-05 1E-09 68.0 7.8 119 2-121 3-144 (296)
19 PRK11689 aromatic amino acid e 97.8 8.6E-05 1.9E-09 66.4 9.0 115 6-121 155-286 (295)
20 TIGR03340 phn_DUF6 phosphonate 97.8 6.9E-05 1.5E-09 66.4 8.1 113 7-119 144-280 (281)
21 PRK11689 aromatic amino acid e 97.8 0.0081 1.7E-07 53.6 21.2 115 8-122 5-137 (295)
22 PRK11453 O-acetylserine/cystei 97.7 0.00033 7.1E-09 62.6 11.1 116 6-121 142-286 (299)
23 TIGR00688 rarD rarD protein. T 97.7 0.0048 1E-07 53.7 18.0 62 60-121 80-141 (256)
24 PF06027 DUF914: Eukaryotic pr 97.7 0.00028 6.2E-09 64.7 10.1 78 47-124 74-153 (334)
25 COG0697 RhaT Permeases of the 97.6 0.024 5.2E-07 48.9 20.0 71 56-126 76-147 (292)
26 TIGR00776 RhaT RhaT L-rhamnose 97.5 0.0021 4.5E-08 57.6 13.0 75 50-124 56-138 (290)
27 PF00893 Multi_Drug_Res: Small 97.4 0.0011 2.4E-08 49.7 8.3 65 49-113 27-93 (93)
28 PF04142 Nuc_sug_transp: Nucle 97.4 0.00074 1.6E-08 59.3 8.5 71 57-127 24-94 (244)
29 PRK11272 putative DMT superfam 97.4 0.0084 1.8E-07 53.4 15.4 65 56-121 75-140 (292)
30 PF08449 UAA: UAA transporter 97.2 0.044 9.5E-07 49.1 17.6 72 58-129 72-143 (303)
31 PRK15430 putative chlorampheni 97.2 0.002 4.4E-08 57.5 8.9 64 61-124 224-287 (296)
32 COG0697 RhaT Permeases of the 97.2 0.0028 6.1E-08 54.7 9.6 116 6-122 153-287 (292)
33 PRK11431 multidrug efflux syst 97.2 0.0061 1.3E-07 46.9 10.1 72 49-120 27-100 (105)
34 TIGR00817 tpt Tpt phosphate/ph 97.2 0.0022 4.8E-08 57.2 8.8 65 55-120 71-135 (302)
35 PRK10650 multidrug efflux syst 97.1 0.013 2.9E-07 45.3 11.3 73 48-120 32-106 (109)
36 COG2076 EmrE Membrane transpor 96.9 0.0042 9E-08 47.9 6.7 72 49-120 28-101 (106)
37 PLN00411 nodulin MtN21 family 96.8 0.024 5.1E-07 52.6 12.8 60 63-122 91-156 (358)
38 PTZ00343 triose or hexose phos 96.8 0.0066 1.4E-07 55.8 8.7 67 54-121 119-185 (350)
39 PRK10532 threonine and homoser 96.7 0.23 4.9E-06 44.2 17.7 112 4-122 9-137 (293)
40 PF06027 DUF914: Eukaryotic pr 96.4 0.043 9.3E-07 50.5 11.2 126 3-129 164-312 (334)
41 KOG4510 Permease of the drug/m 96.1 0.01 2.3E-07 52.9 5.3 114 6-121 37-168 (346)
42 TIGR00817 tpt Tpt phosphate/ph 96.1 0.014 3.1E-07 52.0 6.3 117 5-121 143-292 (302)
43 PF06800 Sugar_transport: Suga 96.1 0.33 7.1E-06 43.4 14.7 79 51-129 43-129 (269)
44 KOG3912 Predicted integral mem 96.1 0.28 6E-06 44.3 14.0 72 52-123 88-159 (372)
45 TIGR00776 RhaT RhaT L-rhamnose 95.9 0.018 3.9E-07 51.6 6.2 113 6-121 151-287 (290)
46 KOG2765 Predicted membrane pro 95.9 0.027 5.8E-07 52.3 7.3 85 66-150 175-264 (416)
47 PF03151 TPT: Triose-phosphate 95.8 0.084 1.8E-06 41.8 9.0 112 8-119 1-150 (153)
48 PRK13499 rhamnose-proton sympo 95.8 0.1 2.2E-06 48.2 10.5 121 1-125 1-156 (345)
49 COG5006 rhtA Threonine/homoser 95.7 0.14 3E-06 45.5 10.6 121 6-126 147-286 (292)
50 COG2962 RarD Predicted permeas 94.4 0.73 1.6E-05 41.6 11.3 118 6-123 6-145 (293)
51 TIGR00803 nst UDP-galactose tr 94.2 0.21 4.6E-06 42.5 7.5 115 4-118 82-220 (222)
52 KOG2234 Predicted UDP-galactos 93.6 0.44 9.5E-06 44.0 8.7 75 53-127 95-169 (345)
53 PTZ00343 triose or hexose phos 92.9 1.1 2.4E-05 41.2 10.3 51 69-119 295-345 (350)
54 PF06800 Sugar_transport: Suga 91.3 0.53 1.1E-05 42.1 6.1 61 59-119 204-268 (269)
55 KOG4831 Unnamed protein [Funct 89.4 0.78 1.7E-05 35.5 4.6 77 45-121 47-124 (125)
56 COG1742 Uncharacterized conser 88.5 2.4 5.2E-05 32.6 6.8 47 79-126 61-107 (109)
57 PRK02237 hypothetical protein; 88.0 3 6.5E-05 32.3 7.1 45 80-125 63-107 (109)
58 KOG1583 UDP-N-acetylglucosamin 86.8 1.3 2.8E-05 40.0 5.1 79 51-129 65-144 (330)
59 PF02694 UPF0060: Uncharacteri 85.9 1.1 2.3E-05 34.6 3.6 45 80-125 61-105 (107)
60 COG3169 Uncharacterized protei 83.1 1.6 3.6E-05 33.3 3.5 36 84-119 77-112 (116)
61 PF04142 Nuc_sug_transp: Nucle 81.5 13 0.00029 32.4 9.2 109 4-112 111-243 (244)
62 PF08449 UAA: UAA transporter 80.6 11 0.00024 33.6 8.6 114 6-119 153-294 (303)
63 KOG2766 Predicted membrane pro 79.6 0.62 1.3E-05 41.6 0.2 59 68-126 96-154 (336)
64 PF04342 DUF486: Protein of un 75.9 2.9 6.2E-05 32.2 2.8 35 85-119 71-105 (108)
65 PRK13499 rhamnose-proton sympo 72.3 13 0.00029 34.4 6.9 41 82-123 295-342 (345)
66 KOG1581 UDP-galactose transpor 66.0 58 0.0013 29.9 9.3 68 60-127 93-160 (327)
67 KOG4314 Predicted carbohydrate 59.2 19 0.00041 31.3 4.7 62 63-124 66-127 (290)
68 PF05653 Mg_trans_NIPA: Magnes 56.1 56 0.0012 29.5 7.6 80 47-126 206-296 (300)
69 PF04657 DUF606: Protein of un 53.9 1.1E+02 0.0024 24.3 8.8 35 85-119 100-138 (138)
70 KOG1441 Glucose-6-phosphate/ph 53.4 15 0.00033 33.6 3.5 68 52-120 86-153 (316)
71 KOG2765 Predicted membrane pro 53.1 1.1E+02 0.0024 28.9 9.0 121 5-125 245-393 (416)
72 PF12263 DUF3611: Protein of u 51.6 1.2E+02 0.0026 25.6 8.3 43 55-97 113-169 (183)
73 PF12273 RCR: Chitin synthesis 50.3 12 0.00025 29.5 2.0 24 143-166 2-25 (130)
74 PRK01030 tetrahydromethanopter 48.2 2E+02 0.0044 25.7 12.4 133 55-187 68-210 (264)
75 COG4975 GlcU Putative glucose 45.0 6.2 0.00013 35.2 -0.4 61 62-122 221-285 (288)
76 PF03605 DcuA_DcuB: Anaerobic 44.9 65 0.0014 30.2 6.2 53 77-129 167-246 (364)
77 COG4858 Uncharacterized membra 43.2 2.1E+02 0.0047 24.5 9.2 58 49-106 157-220 (226)
78 KOG1580 UDP-galactose transpor 42.2 25 0.00054 31.4 2.9 41 85-125 276-316 (337)
79 PF05106 Phage_holin_3: Phage 41.9 64 0.0014 24.4 4.8 53 132-185 7-59 (100)
80 KOG1442 GDP-fucose transporter 38.7 6.8 0.00015 35.5 -1.1 58 60-117 112-169 (347)
81 TIGR01148 mtrC N5-methyltetrah 37.8 3E+02 0.0065 24.6 16.0 135 55-191 75-220 (265)
82 PF06157 DUF973: Protein of un 37.8 3.1E+02 0.0067 24.8 10.5 60 6-68 46-105 (285)
83 COG5522 Predicted integral mem 35.1 2.7E+02 0.0058 24.3 8.0 49 65-113 105-162 (236)
84 PF08019 DUF1705: Domain of un 34.5 2.3E+02 0.005 22.7 7.4 68 131-199 55-128 (156)
85 PF01788 PsbJ: PsbJ; InterPro 34.3 64 0.0014 20.4 3.1 11 49-59 7-17 (40)
86 PF04211 MtrC: Tetrahydrometha 32.5 3.7E+02 0.0079 24.1 15.6 132 55-186 75-216 (262)
87 PF15196 Harakiri: Activator o 30.3 1E+02 0.0022 22.4 4.0 47 11-57 30-76 (92)
88 KOG4510 Permease of the drug/m 29.9 44 0.00096 30.3 2.5 115 7-121 191-324 (346)
89 COG4975 GlcU Putative glucose 29.5 49 0.0011 29.6 2.7 79 47-125 53-139 (288)
90 TIGR00688 rarD rarD protein. T 27.8 1.4E+02 0.003 25.5 5.3 38 60-97 218-255 (256)
91 PF11712 Vma12: Endoplasmic re 26.0 2.5E+02 0.0054 22.2 6.1 62 131-193 66-129 (142)
92 PF01306 LacY_symp: LacY proto 24.5 2E+02 0.0043 27.3 6.0 72 82-153 146-230 (412)
93 KOG1583 UDP-N-acetylglucosamin 24.5 35 0.00076 31.0 0.9 34 88-121 280-313 (330)
94 PF04531 Phage_holin_1: Bacter 23.6 1.8E+02 0.0039 21.1 4.5 22 47-68 7-28 (84)
95 PF06966 DUF1295: Protein of u 22.0 4.1E+02 0.009 22.8 7.2 58 6-64 122-186 (235)
96 PRK10473 multidrug efflux syst 21.4 2.7E+02 0.0058 24.9 6.1 20 99-118 263-284 (392)
97 COG2855 Predicted membrane pro 20.8 2.9E+02 0.0062 25.7 6.1 79 46-125 65-144 (334)
No 1
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-57 Score=404.19 Aligned_cols=236 Identities=67% Similarity=1.129 Sum_probs=230.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhh
Q 026598 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVT 80 (236)
Q Consensus 1 ~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~ 80 (236)
|++++++|+.+|+.||++++.++++|||+++|..+.+.|++++..+|++.|.||+|++.|++|+++||.||+|||+++|+
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVt 94 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVT 94 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhc
Confidence 78999999999999999999999999999999888778888888999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccCcCCHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 026598 81 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI 160 (236)
Q Consensus 81 Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~~~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~ 160 (236)
|||++|+++|+++|++++||+++..+.+||++|+.|.+++|.++|+|++..|++|+++++++|+|++|+.+.+++.++++
T Consensus 95 PLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il~ 174 (335)
T KOG2922|consen 95 PLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLILI 174 (335)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhccccCCcchhhhhHhHhhhhhHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhhhhCC
Q 026598 161 LYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMVSVL 236 (236)
Q Consensus 161 ~~~~~r~~~~~~l~~~~~~g~lg~~tvl~aK~~~~~l~~~~~g~~~~~~~~~y~~~~~~~~~~~~Q~~~LN~al~l 236 (236)
++..||+|++|+++|+.+|+.+|++||+++|+++.+++++++|++|+.+|++|+++++++.|+..|++||||||++
T Consensus 175 ~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~ 250 (335)
T KOG2922|consen 175 FFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDL 250 (335)
T ss_pred eeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999974
No 2
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=2.1e-55 Score=394.84 Aligned_cols=236 Identities=48% Similarity=0.805 Sum_probs=224.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhh
Q 026598 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVT 80 (236)
Q Consensus 1 ~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~ 80 (236)
|=+++++|+.+|++||++++.|+++|||+++|+++++.|++++.++|+|||+||.|+.++++|+++|++||+|+|+++||
T Consensus 1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~ 80 (300)
T PF05653_consen 1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVA 80 (300)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHH
Confidence 55789999999999999999999999999999887655655566789999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccCcCCHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 026598 81 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI 160 (236)
Q Consensus 81 Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~~~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~ 160 (236)
|++++++++|++++++++|||++++|+.|+.+++.|+++++.++|++++.+|.||+.+++++|+|+.|+.+..+..+.++
T Consensus 81 Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~ 160 (300)
T PF05653_consen 81 PLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILI 160 (300)
T ss_pred HHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred hhhccccCCcchhhhhHhHhhhhhHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHhhhhCC
Q 026598 161 LYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMVSVL 236 (236)
Q Consensus 161 ~~~~~r~~~~~~l~~~~~~g~lg~~tvl~aK~~~~~l~~~~~g~~~~~~~~~y~~~~~~~~~~~~Q~~~LN~al~l 236 (236)
++..||+|++++++|.++|+++|++|++++|++++.++++++|++||.||.+|+++++++.|++.|++||||||+.
T Consensus 161 ~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~ 236 (300)
T PF05653_consen 161 FFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKR 236 (300)
T ss_pred HhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788899999999999999999999999999999999999999999999999999999999999999999999973
No 3
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.97 E-value=5e-09 Score=82.82 Aligned_cols=111 Identities=26% Similarity=0.383 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCC---CCC--------------CC-CCcccccchhHH----HHHHHHHHHHHHH
Q 026598 10 ILAVVSSAFIGSSFIIKKKGLRKAGANG---ARA--------------GS-GGYGYLLEPLWW----VGMFTMIVGEIAN 67 (236)
Q Consensus 10 ~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~--------------~~-~~~~~~~~~~W~----~G~~~~~~g~~~~ 67 (236)
..|+.||++.++..++-|-+.+..+.+- -|. |+ +...-...+.|. .| +.-+++..+.
T Consensus 6 ~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSG-la~glswl~Y 84 (140)
T COG2510 6 IYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSG-LAGGLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHH-HHHHHHHHHH
Confidence 5678888888899888888876543210 010 00 001112223343 24 4457889999
Q ss_pred HHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 68 ~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
|.|+.-+++|.|.|+...|+++..+++..++|||++..+|+|+.+|++|++++.
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999998764
No 4
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.97 E-value=3.7e-09 Score=84.32 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCC-CCcccccch--hHHHHHHHHHHHHHHHHHHHhhcCchhhhchhh
Q 026598 8 GFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGS-GGYGYLLEP--LWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGA 84 (236)
Q Consensus 8 gv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~-~~~~~~~~~--~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~ 84 (236)
|..+.+.+.++.+.|..+-|++.++.++.+..... .......+| .-+.|+..++++...+..++...|++...|+-+
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~s 82 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLS 82 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 56777888889999999999998887643211100 001124456 556799999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--HhccccccchhhHHHHHhhhhheee
Q 026598 85 LSIIVSAVLAHF--MLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 85 ~~lv~~~~~a~~--~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
...++..+.+.. ++||++|.+++.|++++++|+.++.
T Consensus 83 l~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 83 LSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 998888888885 7999999999999999999998864
No 5
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.72 E-value=1.5e-07 Score=73.12 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHH--HHHHHHHHHHHHHHhhcCchhhhchhhHHHHHH
Q 026598 13 VVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGM--FTMIVGEIANFVAYIYAPAVLVTPLGALSIIVS 90 (236)
Q Consensus 13 l~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~--~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~ 90 (236)
+.+.++-..|....|++.+..+.. + ...++..+.+. ..+.++..+...++...|.+...|+.+++.+++
T Consensus 7 ~~ai~~ev~g~~~lK~s~~~~~~~--------~-~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~ 77 (111)
T PRK15051 7 VFASLLSVAGQLCQKQATRPVAIG--------K-RRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWV 77 (111)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc--------h-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 445666677888888874333211 0 11123444544 557888999999999999999999999999999
Q ss_pred HHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598 91 AVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (236)
Q Consensus 91 ~~~a~~~l~e~~~~~~~~g~~li~~G~~~~ 120 (236)
.+.+.+++|||++.+++.|..+++.|++++
T Consensus 78 ~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 78 TLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765
No 6
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.71 E-value=2.4e-08 Score=77.73 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCC--CCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhchh-hHHHHHHHH
Q 026598 16 SAFIGSSFIIKKKGLRKAGANGAR--AGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAV 92 (236)
Q Consensus 16 a~~~a~g~vlqk~~~~~~~~~~~~--~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~ 92 (236)
+++.+...-+.||+.+..++...+ .-++....+++|..++++++.-.|++..+..++-+|.|+..|+. +++.+++++
T Consensus 5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l 84 (113)
T PF10639_consen 5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL 84 (113)
T ss_pred hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence 455666777888876655433211 11133458899999999999999999999999999999999996 999999999
Q ss_pred HHHHHhccccccchhhHHHHHhhhhhee
Q 026598 93 LAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (236)
Q Consensus 93 ~a~~~l~e~~~~~~~~g~~li~~G~~~~ 120 (236)
.++++-+|..+++.+.|+.+++.|+.+.
T Consensus 85 ~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 85 TGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 9977766667778899999999998765
No 7
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.61 E-value=2.4e-07 Score=71.52 Aligned_cols=68 Identities=31% Similarity=0.465 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeec
Q 026598 56 GMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (236)
Q Consensus 56 G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~ 124 (236)
|......+..+.+.|+.++| ..+.|+.+++.+++.+++..++|||+++++|.|+.++.+|++++....
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 44445578899999999999 699999999999999999999999999999999999999998875543
No 8
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.56 E-value=1.2e-05 Score=71.24 Aligned_cols=113 Identities=23% Similarity=0.248 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccC-CCCC---------------CCCCcccccchhHHH---HHHHHHHHHHHHHH
Q 026598 9 FILAVVSSAFIGSSFIIKKKGLRKAGAN-GARA---------------GSGGYGYLLEPLWWV---GMFTMIVGEIANFV 69 (236)
Q Consensus 9 v~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~~~---------------~~~~~~~~~~~~W~~---G~~~~~~g~~~~~~ 69 (236)
..+.+.++++.|..+.+.||+.++++.- ..+. ....++..++..|+. +......+..+.+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQ 82 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999765543320 0000 000011112222211 33344566778889
Q ss_pred HHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 70 AYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 70 al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
++...|.+..+|+...+.+++.+++..++|||+++++|.|..++..|+.++.
T Consensus 83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998765
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.30 E-value=4.4e-06 Score=74.59 Aligned_cols=124 Identities=16% Similarity=0.100 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC---CC-C----------CCCcccccch----hHHHHHHHHHHHHHHH
Q 026598 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGA---RA-G----------SGGYGYLLEP----LWWVGMFTMIVGEIAN 67 (236)
Q Consensus 6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~---~~-~----------~~~~~~~~~~----~W~~G~~~~~~g~~~~ 67 (236)
..|..+++.++++.+.+.++.||..++.+.... .. + .+........ .++.|+...++++.++
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~ 226 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLE 226 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999998875433221000 00 0 0000111112 2355667777888899
Q ss_pred HHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccC
Q 026598 68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (236)
Q Consensus 68 ~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~ 129 (236)
..++...|.+.++++..+..+++.+++.+++||+++..++.|.++++.|+.......++|++
T Consensus 227 ~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 227 MIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999877655555443
No 10
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.05 E-value=8.7e-05 Score=58.49 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCC
Q 026598 53 WWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (236)
Q Consensus 53 W~~G~~~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~ 126 (236)
|+..+.+++.+..+...++...|.++..|+ .+++.+...+.+.++.||+++..++.|..+++.|++.+=..+++
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~ 107 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRK 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence 455666788899999999999999999999 57999999999999999999999999999999999877554443
No 11
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.04 E-value=3.1e-05 Score=71.59 Aligned_cols=123 Identities=17% Similarity=0.200 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC-C------------------CCCCCccccc-chhHHHHHH----HH
Q 026598 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGA-R------------------AGSGGYGYLL-EPLWWVGMF----TM 60 (236)
Q Consensus 5 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~-~------------------~~~~~~~~~~-~~~W~~G~~----~~ 60 (236)
..+|..+++.|+++.+.+.++||+..++.+.... . .+.+...... -..+...++ ..
T Consensus 187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t 266 (358)
T PLN00411 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence 4679999999999999999999986555322100 0 0000000000 011111222 12
Q ss_pred HHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCc
Q 026598 61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (236)
Q Consensus 61 ~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~ 127 (236)
.+++.++..+....+++.++...-+..+++++++..+++|+++..+++|.++++.|+.++.....+|
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3466778888999999999999999999999999999999999999999999999998875544444
No 12
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.01 E-value=0.00045 Score=59.73 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeee
Q 026598 55 VGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (236)
Q Consensus 55 ~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~ 122 (236)
.|.....++..+.+.|+.+.|.+..+++.....+++.+++..++|||++++++.|+.+.+.|+.++..
T Consensus 52 ~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 52 LGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 45556678888999999999999999999999999999999999999999999999999999988753
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.97 E-value=8.5e-05 Score=64.28 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---CC--C------------CCCCcccccchhHH----HHHHHHHH
Q 026598 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG---AR--A------------GSGGYGYLLEPLWW----VGMFTMIV 62 (236)
Q Consensus 4 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~--~------------~~~~~~~~~~~~W~----~G~~~~~~ 62 (236)
+...|..+++.++++.+...+.+||..++.+.+. .+ . ..+.......+.|. .|....+.
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999654433110 00 0 00111111223332 34444567
Q ss_pred HHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhh
Q 026598 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGS 117 (236)
Q Consensus 63 g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~ 117 (236)
+..+++.++...|++.++.+.....+++.+++.+++||+++..++.|+.+++.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999999999999999999986
No 14
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.96 E-value=0.0019 Score=57.78 Aligned_cols=112 Identities=22% Similarity=0.274 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCC---CCCC--C-CCcccc---cch---hHHHHHHHHHHHHHHHHHHHhh-cCc
Q 026598 10 ILAVVSSAFIGSSFIIKKKGLRKAGANG---ARAG--S-GGYGYL---LEP---LWWVGMFTMIVGEIANFVAYIY-APA 76 (236)
Q Consensus 10 ~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~~--~-~~~~~~---~~~---~W~~G~~~~~~g~~~~~~al~~-ap~ 76 (236)
.+++.++++.+......|....+.+... .|.. . ...... |++ .-..|+........+.+.++.. .|.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a 86 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA 86 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4577888999999999988765433210 1210 0 000011 111 1112332223333455667776 477
Q ss_pred hhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 77 VLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 77 slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
+..+-+.....++..+++++++|||++++++.|.++...|+.++.
T Consensus 87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 888888889999999999999999999999999999999988765
No 15
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.96 E-value=0.00011 Score=57.07 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=65.3
Q ss_pred chhHHH-HHHHHHHHHHHHHHHHhhcCchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecC
Q 026598 50 EPLWWV-GMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (236)
Q Consensus 50 ~~~W~~-G~~~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~ 125 (236)
+|.|.. .+..++++..+-..|+...|.++..|. .+++.+.+.+.+.++.||+++..++.|..+++.|++.+-..++
T Consensus 29 ~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 29 RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 455544 455678888888999999999999999 7799999999999999999999999999999999988744443
No 16
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.91 E-value=5.2e-05 Score=57.56 Aligned_cols=66 Identities=26% Similarity=0.454 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598 55 VGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (236)
Q Consensus 55 ~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~ 120 (236)
.|......+..+...++...|.+.++++..++.+++.+++..++||+++++++.|+.+++.|+.++
T Consensus 59 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 59 LGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 455545788899999999999999999999999999999999999999999999999999998765
No 17
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.88 E-value=8.3e-05 Score=66.28 Aligned_cols=117 Identities=16% Similarity=0.111 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC----------------CCCCCCCcccccchhHH----HHHHHHHHHH
Q 026598 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG----------------ARAGSGGYGYLLEPLWW----VGMFTMIVGE 64 (236)
Q Consensus 5 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~----------------~~~~~~~~~~~~~~~W~----~G~~~~~~g~ 64 (236)
...|..+++.++++.|.+.+.+||..++.+... .-.+.+.........|+ .|+...+++.
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999988533211100 00000000001112233 2444456778
Q ss_pred HHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 65 IANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 65 ~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
.++..++...|.+.+..+..+..+++.+++..++||+++..++.|..+++.|+.+..
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999997753
No 18
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.87 E-value=4.8e-05 Score=68.00 Aligned_cols=119 Identities=16% Similarity=0.078 Sum_probs=89.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---CCC--C----------C-CCc---ccccchhHH----HHHH
Q 026598 2 FSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG---ARA--G----------S-GGY---GYLLEPLWW----VGMF 58 (236)
Q Consensus 2 ~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~--~----------~-~~~---~~~~~~~W~----~G~~ 58 (236)
|++...|..+.+.++++.+.....-|.. .+.+... .|. + . +.+ +..+++.++ .|..
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 6678899999999999999998888763 2221100 110 0 0 000 011123322 4555
Q ss_pred HHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 59 TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 59 ~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
....+..+.+.++...|.+...-+.....++..++++.++|||+++++|.|.++...|++++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999999999999999999999999999999999999999998764
No 19
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.85 E-value=8.6e-05 Score=66.36 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC--C----------CCCcc-cccchhHH----HHHHHHHHHHHHHH
Q 026598 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA--G----------SGGYG-YLLEPLWW----VGMFTMIVGEIANF 68 (236)
Q Consensus 6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~--~----------~~~~~-~~~~~~W~----~G~~~~~~g~~~~~ 68 (236)
..|..+++.++++.+.+.++.||-.++.+...... . ++... ......|. .| ...++++.++.
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~ 233 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWN 233 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHH
Confidence 46899999999999999999998543322100000 0 00001 11111232 23 23456788899
Q ss_pred HHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 69 VAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 69 ~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
.++...|++.++++..+..+++.+++..++||+++..+++|.++++.|+.+..
T Consensus 234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999999999999999999999987653
No 20
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.83 E-value=6.9e-05 Score=66.38 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCC----C-----C-----------CCCcccccchhHH----HHHHHHHH
Q 026598 7 IGFILAVVSSAFIGSSFIIKKKGLRKAGANGAR----A-----G-----------SGGYGYLLEPLWW----VGMFTMIV 62 (236)
Q Consensus 7 igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~----~-----~-----------~~~~~~~~~~~W~----~G~~~~~~ 62 (236)
-|..+++.++++.+.+.++.|+..++.+..... . . ++......++.|+ .+.....+
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG 223 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 466788999999999988888753322211000 0 0 0000000111222 23344567
Q ss_pred HHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhe
Q 026598 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (236)
Q Consensus 63 g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~ 119 (236)
++.+++.++...|++.++|+.-++.+++.+++.+++||+++..++.|.+++..|+.+
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 788899999999999999999999999999999999999999999999999999865
No 21
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.81 E-value=0.0081 Score=53.64 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCC---CCCC--C------CCcccccc---hhHHHHHHHHHHHHHHHHHHHhh
Q 026598 8 GFILAVVSSAFIGSSFIIKKKGLRKAGANG---ARAG--S------GGYGYLLE---PLWWVGMFTMIVGEIANFVAYIY 73 (236)
Q Consensus 8 gv~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~~--~------~~~~~~~~---~~W~~G~~~~~~g~~~~~~al~~ 73 (236)
+...++.+.++.+..+...|.+..+.+... .|-. . ..++..|+ +....|...+.....+.+.++.+
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 84 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY 84 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456677888888888888888765543210 1110 0 00111121 11222333333444555566654
Q ss_pred ----cCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeee
Q 026598 74 ----APAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (236)
Q Consensus 74 ----ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~ 122 (236)
.|.+..+-+.....++..++++.++|||+++++|.|+++...|+.++..
T Consensus 85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 3555566778888999999999999999999999999999999987764
No 22
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.74 E-value=0.00033 Score=62.65 Aligned_cols=116 Identities=21% Similarity=0.234 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC---C---------------CCCcc------cccchh-HH----HH
Q 026598 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA---G---------------SGGYG------YLLEPL-WW----VG 56 (236)
Q Consensus 6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~---~---------------~~~~~------~~~~~~-W~----~G 56 (236)
..|..+++.++++.+.+.+++||..++.+...... . .+... .-.++. |+ .|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 46999999999999999999998533221100000 0 00000 001222 32 24
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 57 MFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 57 ~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
+...++++.+++.++.-.+..-++++..+..+++.+++.+++||+++..+++|.++++.|+.+..
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence 44556777788888888899999999999999999999999999999999999999999987653
No 23
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.73 E-value=0.0048 Score=53.66 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
+..+..+.+.++...|.+-.+-+...+.++..+++++++|||+++++|.|..+..+|++++.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 55777899999999999999999999999999999999999999999999999999998754
No 24
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.70 E-value=0.00028 Score=64.74 Aligned_cols=78 Identities=23% Similarity=0.434 Sum_probs=66.9
Q ss_pred cccchhHHHH-H-HHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeec
Q 026598 47 YLLEPLWWVG-M-FTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (236)
Q Consensus 47 ~~~~~~W~~G-~-~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~ 124 (236)
..++|.|.-= + .+++.+......||.+.+.+-+|=|...+++++.+++.+++|||.++.++.|+.+|+.|+++++...
T Consensus 74 ~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 74 VLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 3555555432 2 2467888899999999999999999999999999999999999999999999999999998877664
No 25
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.57 E-value=0.024 Score=48.87 Aligned_cols=71 Identities=25% Similarity=0.397 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHH-HHhccccccchhhHHHHHhhhhheeeeecCC
Q 026598 56 GMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAH-FMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (236)
Q Consensus 56 G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~-~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~ 126 (236)
|......+..+.+.++...|.+..+++...+.++..+++. +++|||+++++|.|..+...|+.++...+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 76 ALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 4455677788999999999999999999999999999997 7779999999999999999998877554443
No 26
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.52 E-value=0.0021 Score=57.57 Aligned_cols=75 Identities=15% Similarity=0.365 Sum_probs=66.5
Q ss_pred chhHHHHHHH---HHHHHHHHHHHHhhcCchhhhchhh-HHHHHHHHHHHHHhccccccch----hhHHHHHhhhhheee
Q 026598 50 EPLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLGA-LSIIVSAVLAHFMLNEKLQKMG----MLGCLLCVVGSTMIV 121 (236)
Q Consensus 50 ~~~W~~G~~~---~~~g~~~~~~al~~ap~slV~Pl~~-~~lv~~~~~a~~~l~e~~~~~~----~~g~~li~~G~~~~v 121 (236)
...|..|+.. ...|+++++.|.....++.-.|+.. ..++++.+++.+++||+.++++ ..|.++++.|+.++.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 3456667776 8899999999999999999999999 9999999999999999999999 899999999988775
Q ss_pred eec
Q 026598 122 LHA 124 (236)
Q Consensus 122 ~~~ 124 (236)
...
T Consensus 136 ~~~ 138 (290)
T TIGR00776 136 RSK 138 (290)
T ss_pred ecc
Confidence 543
No 27
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.42 E-value=0.0011 Score=49.68 Aligned_cols=65 Identities=15% Similarity=0.059 Sum_probs=37.4
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHhhcCchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHH
Q 026598 49 LEPLWWVGMF-TMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLC 113 (236)
Q Consensus 49 ~~~~W~~G~~-~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li 113 (236)
+++.|..+.+ .++++..+...|+...|.++.-|+ .+++.+...+.+.++.||+++..++.|+.+|
T Consensus 27 ~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 27 TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp -------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3455555554 578888899999999999999997 4699999999999999999999999999875
No 28
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.42 E-value=0.00074 Score=59.32 Aligned_cols=71 Identities=20% Similarity=0.323 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCc
Q 026598 57 MFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (236)
Q Consensus 57 ~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~ 127 (236)
..++.+...+.+.++...|++.-|=+...-++++++++.+++|+|+++++|.+..+...|++++-..+..+
T Consensus 24 A~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 24 ALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 46789999999999999999999999999999999999999999999999999999999998876655443
No 29
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.41 E-value=0.0084 Score=53.38 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHH-hhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 56 GMFTMIVGEIANFVAY-IYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 56 G~~~~~~g~~~~~~al-~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
|......+..+.+.+. ...|....+-+.....++..+++++ +|||+++++|.|..+...|+.++.
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 75 GLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 4444445566667777 8889888999999999999999975 699999999999999999987653
No 30
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.20 E-value=0.044 Score=49.15 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccC
Q 026598 58 FTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (236)
Q Consensus 58 ~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~ 129 (236)
.++.++..++-.|+.+.|.+.-+=+-+..++++++++..++|||.+++|+.+++++++|+.+......++++
T Consensus 72 ~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 72 FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 445677888999999999999999999999999999999999999999999999999999998877665444
No 31
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.19 E-value=0.002 Score=57.54 Aligned_cols=64 Identities=16% Similarity=0.022 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeec
Q 026598 61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (236)
Q Consensus 61 ~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~ 124 (236)
.++..+.+.++...|++.++++.-+..+++.+++.++++|+++..++.|.++++.|+.++...+
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999987765443
No 32
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.19 E-value=0.0028 Score=54.74 Aligned_cols=116 Identities=26% Similarity=0.279 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-CC------C--------CCCCc-c-cccchhHH--HHHHHHHHHHHH
Q 026598 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANG-AR------A--------GSGGY-G-YLLEPLWW--VGMFTMIVGEIA 66 (236)
Q Consensus 6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~-~~------~--------~~~~~-~-~~~~~~W~--~G~~~~~~g~~~ 66 (236)
..|..+++.++++.+.+.+.+|+.. +.+... .. . ..+.. + ..+..... .|+...+++..+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998754 211100 00 0 00000 1 11111111 234444467888
Q ss_pred HHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeee
Q 026598 67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (236)
Q Consensus 67 ~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~ 122 (236)
.+.++...|.+.++|+.....+++.+++..+++|+++.+++.|+.+++.|+.+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999876543
No 33
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.17 E-value=0.0061 Score=46.89 Aligned_cols=72 Identities=17% Similarity=0.039 Sum_probs=60.8
Q ss_pred cchhHHHHH-HHHHHHHHHHHHHHhhcCchhhhchhh-HHHHHHHHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598 49 LEPLWWVGM-FTMIVGEIANFVAYIYAPAVLVTPLGA-LSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (236)
Q Consensus 49 ~~~~W~~G~-~~~~~g~~~~~~al~~ap~slV~Pl~~-~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~ 120 (236)
+++.|...+ ..+..+..+-..|+...|.++.-++=+ ++.+.+.+.+.++.||+++..++.|..+++.|++.+
T Consensus 27 ~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 27 SRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 356655544 456777788888899999999988754 999999999999999999999999999999999875
No 34
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.16 E-value=0.0022 Score=57.22 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598 55 VGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (236)
Q Consensus 55 ~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~ 120 (236)
.|+. +.++..++..++.+.+.+..+-+.+.+.+++.+++++++|||++++++.|.++.+.|+.+.
T Consensus 71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 4555 4677789999999999999999999999999999999999999999999999999999754
No 35
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.08 E-value=0.013 Score=45.35 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=61.0
Q ss_pred ccchhHHHHHH-HHHHHHHHHHHHHhhcCchhhhchh-hHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598 48 LLEPLWWVGMF-TMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (236)
Q Consensus 48 ~~~~~W~~G~~-~~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~ 120 (236)
+++|.|...+. .++++..+-..|+...|.++.-|.= +++.+...+.+.++.||+++..++.|..+++.|++.+
T Consensus 32 f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 32 FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 34566666554 3567777888888999999998874 5889999999999999999999999999999998764
No 36
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.0042 Score=47.89 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=61.1
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHhhcCchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598 49 LEPLWWVGMF-TMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (236)
Q Consensus 49 ~~~~W~~G~~-~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~ 120 (236)
+|+.|.+.+. .+++++.+-..|+...|..+--++ ++++.+...+.+..+.||+++..+++|..++++|++.+
T Consensus 28 ~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 28 TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 3556666554 467888888899999999998775 78899999999999999999999999999999998764
No 37
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=96.84 E-value=0.024 Score=52.57 Aligned_cols=60 Identities=15% Similarity=0.420 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHH------hccccccchhhHHHHHhhhhheeee
Q 026598 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFM------LNEKLQKMGMLGCLLCVVGSTMIVL 122 (236)
Q Consensus 63 g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~------l~e~~~~~~~~g~~li~~G~~~~v~ 122 (236)
...+.+.++.+.|++..+=+.....++..++++++ +|||++++++.|++++.+|+.++..
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999 6999999999999999999987654
No 38
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.79 E-value=0.0066 Score=55.81 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 54 WVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 54 ~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
..|+.-. .+..+...++...|++..+=+-+.+.+++++++++++|||++++.+.|.++++.|+.+..
T Consensus 119 p~gl~~~-~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 119 PQGLCHL-FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHH-HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 3444433 245566799999999999999999999999999999999999999999999999998865
No 39
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.70 E-value=0.23 Score=44.24 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC---CCC--C--------CCCcccccchhH----HHHHHHHHHHHHH
Q 026598 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG---ARA--G--------SGGYGYLLEPLW----WVGMFTMIVGEIA 66 (236)
Q Consensus 4 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~---~~~--~--------~~~~~~~~~~~W----~~G~~~~~~g~~~ 66 (236)
+...|+.+.+.+.++.+.+.+..|.+..+.+... .|. + ...+...+++.| +.|.. +.....+
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 87 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYL 87 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHH
Confidence 3467889999999999999999998765533210 111 0 000011122223 44543 4566677
Q ss_pred HHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeee
Q 026598 67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (236)
Q Consensus 67 ~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~ 122 (236)
.+.++...|.+...-+.....++..++++ ||.+ ++.+..+...|+.+++.
T Consensus 88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 88 FYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeee
Confidence 88899999999888777777777777663 5544 45667777888877653
No 40
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.40 E-value=0.043 Score=50.51 Aligned_cols=126 Identities=19% Similarity=0.227 Sum_probs=78.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC--CCC-------------CCCcccccchhHHHHHHHH-HHHHHH
Q 026598 3 SSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGA--RAG-------------SGGYGYLLEPLWWVGMFTM-IVGEIA 66 (236)
Q Consensus 3 ~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~--~~~-------------~~~~~~~~~~~W~~G~~~~-~~g~~~ 66 (236)
++..+|-++++.||++.|+..++||+-.++.+.... .-| -+ ++-+++-.|-...... +...++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile-~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILE-RSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhee-hhhhhccCCChhhHHHHHHHHHH
Confidence 356889999999999999999999997766443100 000 00 0111111121111222 222334
Q ss_pred HHHHHhhcCchh-------hhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccC
Q 026598 67 NFVAYIYAPAVL-------VTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (236)
Q Consensus 67 ~~~al~~ap~sl-------V~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~ 129 (236)
.+.-|...|..+ +..=...+-++++++..++.|+++++.-++|-++++.|.++.....+++++
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 455555554433 222234457888999999999999999999999999999887666655443
No 41
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.11 E-value=0.01 Score=52.93 Aligned_cols=114 Identities=23% Similarity=0.383 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CCC-CC-----CCcccccc--------hhHHH--HHHHHHHHHHHH
Q 026598 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANG--ARA-GS-----GGYGYLLE--------PLWWV--GMFTMIVGEIAN 67 (236)
Q Consensus 6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~--~~~-~~-----~~~~~~~~--------~~W~~--G~~~~~~g~~~~ 67 (236)
.+|+.+..+| .+.+...++-++...-.+.+. .|- .. .-.-|.+. +.|++ |.... .|..+.
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~-tgvmlm 114 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGF-TGVMLM 114 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhh-hHHHHH
Confidence 3567777777 777777777777544433220 110 00 00011111 12332 33321 334456
Q ss_pred HHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 68 ~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
+-||.+.|.+=-.-+.-.+.+++.++|+.+||||.|+.|.+|+.+...|+++++
T Consensus 115 yya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 115 YYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred HHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 666666666655556778899999999999999999999999999999999875
No 42
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.08 E-value=0.014 Score=51.96 Aligned_cols=117 Identities=15% Similarity=0.232 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC-------C----------CCCccccc----c--------hhHHH
Q 026598 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA-------G----------SGGYGYLL----E--------PLWWV 55 (236)
Q Consensus 5 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~-------~----------~~~~~~~~----~--------~~W~~ 55 (236)
...|..+++.|+++.+...++.||..++.+.+..+. + .+..+... + ..|..
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 467999999999999999999888544111110000 0 00000000 0 11211
Q ss_pred HHHH----HHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 56 GMFT----MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 56 G~~~----~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
+... +......++.++...+++-.+-.+.+..+++.+++..+++|+++..++.|.++++.|+.+.-
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 2111 11122344567888888888999999999999999999999999999999999999997643
No 43
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.08 E-value=0.33 Score=43.42 Aligned_cols=79 Identities=13% Similarity=0.305 Sum_probs=66.2
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhcCchhhhchh-hHHHHHHHHHHHHHhccccccchh----hHHHHHhhhhheeee
Q 026598 51 PLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTMIVL 122 (236)
Q Consensus 51 ~~W~~G~~~---~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~~~~~~----~g~~li~~G~~~~v~ 122 (236)
..|+.+++. -.+|.++|+.++.....|.-.|+. +..++.|.+.+.++++|--+..++ .+.++++.|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 556766653 478999999999999999999998 899999999999999998888876 588899999987766
Q ss_pred ecCCccC
Q 026598 123 HAPLEES 129 (236)
Q Consensus 123 ~~~~~~~ 129 (236)
..+++++
T Consensus 123 ~~~~~~~ 129 (269)
T PF06800_consen 123 QDKKSDK 129 (269)
T ss_pred ccccccc
Confidence 6555543
No 44
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=96.05 E-value=0.28 Score=44.34 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeee
Q 026598 52 LWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (236)
Q Consensus 52 ~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~ 123 (236)
....=.++++.|.....++|-...+|--|-+-+.-++|.-+|+..++|++++.++|.|...+.+|.+.+...
T Consensus 88 lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 88 LFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred eecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 344456788999999999999999999999999999999999999999999999999999999999887665
No 45
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.93 E-value=0.018 Score=51.56 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-C-CC-----CC----CC----cccccchhHH----HHHHHHHHHHHH
Q 026598 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANG-A-RA-----GS----GG----YGYLLEPLWW----VGMFTMIVGEIA 66 (236)
Q Consensus 6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~-~-~~-----~~----~~----~~~~~~~~W~----~G~~~~~~g~~~ 66 (236)
-.|+..++.|+++.+.-...-|+.. ..+.+- . .. +. .. ++. .++.+| .|+. ..+++.+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFG-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPL-KKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC-CCcceehhHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHH-HHHHHHH
Confidence 5699999999999888877766531 111100 0 00 00 00 111 122333 3444 4677888
Q ss_pred HHHHHh-hcCchhhhchhhHHHHHHHHHHHHHhccccccchh----hHHHHHhhhhheee
Q 026598 67 NFVAYI-YAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTMIV 121 (236)
Q Consensus 67 ~~~al~-~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~----~g~~li~~G~~~~v 121 (236)
.+.+.. ..+.+.-.++.....+.+.+.+.+++||+.+++|+ .|.++++.|+.++.
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 888889 99999999999999999999999999999999999 99999999988764
No 46
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.92 E-value=0.027 Score=52.33 Aligned_cols=85 Identities=14% Similarity=0.208 Sum_probs=68.3
Q ss_pred HHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccCcC-----CHHHHHHHh
Q 026598 66 ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLN-----SVQEIWVLA 140 (236)
Q Consensus 66 ~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~~~-----~~~~l~~~~ 140 (236)
..=.||++-.++-.+=+.+.|=+|++.++..+.+||+|....+++++.+.|++++.....++.++. ...+++.++
T Consensus 175 ~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL~ 254 (416)
T KOG2765|consen 175 TSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLALL 254 (416)
T ss_pred HHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHHH
Confidence 334689999999999999999999999999999999999999999999999998887766443332 345677666
Q ss_pred cchhHHHHHH
Q 026598 141 TQPAFLLYVG 150 (236)
Q Consensus 141 ~~~~f~~y~~ 150 (236)
..-.+.+|..
T Consensus 255 sA~~YavY~v 264 (416)
T KOG2765|consen 255 SALLYAVYTV 264 (416)
T ss_pred HHHHHHHHHH
Confidence 6555666654
No 47
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.79 E-value=0.084 Score=41.80 Aligned_cols=112 Identities=22% Similarity=0.349 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CCCC---------------------CC------Cccccc-----chh-
Q 026598 8 GFILAVVSSAFIGSSFIIKKKGLRKAGANG--ARAG---------------------SG------GYGYLL-----EPL- 52 (236)
Q Consensus 8 gv~lAl~sa~~~a~g~vlqk~~~~~~~~~~--~~~~---------------------~~------~~~~~~-----~~~- 52 (236)
|..+++.|+++.++=.+++|+..++..+++ .+.- ++ ..+..+ .+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 578899999999999999988766631100 0000 00 000111 212
Q ss_pred -HHHHHH--HHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhe
Q 026598 53 -WWVGMF--TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (236)
Q Consensus 53 -W~~G~~--~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~ 119 (236)
++.... +...-+..++..+...++.--+=++.+--+...+++..+.+|++|..++.|..+++.|...
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 222111 1123345667777778888888888999999999999999999999999999999999864
No 48
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.77 E-value=0.1 Score=48.21 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=89.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-c--------------------CCCCCCCCCccccc---chhHHHH
Q 026598 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAG-A--------------------NGARAGSGGYGYLL---EPLWWVG 56 (236)
Q Consensus 1 ~~~~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~-~--------------------~~~~~~~~~~~~~~---~~~W~~G 56 (236)
|+++..+|++..+++.+|.+.=.+-||| .++=+ | ...| +..++++ ...|..+
T Consensus 1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~---~f~~~~~~~~~~~~~~~ 76 (345)
T PRK13499 1 MSNAIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGGIFSWLILPWLIAALLLP---DFWAYYSSFSGSTLLPV 76 (345)
T ss_pred CCchhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHhcCHHHHHHH
Confidence 7788999999999999999888888888 32211 0 0000 1223333 2446655
Q ss_pred HH---HHHHHHHHHHHHHhhcCchhhhchh-hHHHHHHHHHHHHHhcccc---ccch----hhHHHHHhhhhheeeeecC
Q 026598 57 MF---TMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKL---QKMG----MLGCLLCVVGSTMIVLHAP 125 (236)
Q Consensus 57 ~~---~~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~---~~~~----~~g~~li~~G~~~~v~~~~ 125 (236)
++ +-.+|.+.++.+......|+-.|++ +++++.+.++...+.+|=- +..+ ..|++++++|+.+....+.
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 54 3478999999999999999999996 6788999999999998643 4433 5999999999998877544
No 49
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.72 E-value=0.14 Score=45.50 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-CC------------CCC-CCCcccccchhHH-HHHHH----HHHHHHH
Q 026598 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGAN-GA------------RAG-SGGYGYLLEPLWW-VGMFT----MIVGEIA 66 (236)
Q Consensus 6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~------------~~~-~~~~~~~~~~~W~-~G~~~----~~~g~~~ 66 (236)
-.|+.+|+.+..|.+.=.+.-||.-+..+.. +. +-| .+..+.+.+|.-. .+... -.+=+.+
T Consensus 147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsL 226 (292)
T COG5006 147 PVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSL 226 (292)
T ss_pred HHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHH
Confidence 4799999999999998888877754321110 00 000 0112334444433 33333 3344568
Q ss_pred HHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCC
Q 026598 67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (236)
Q Consensus 67 ~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~ 126 (236)
..+|+.-.|...-.-+.++...++++.+..+++|++|..||.|+.+++.++.-.....++
T Consensus 227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 999999999999999999999999999999999999999999999999998755444333
No 50
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=94.36 E-value=0.73 Score=41.57 Aligned_cols=118 Identities=19% Similarity=0.147 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhhhhcc--------------CCCCCCCCCcccccchhHHHHHHHHHHHHHHH
Q 026598 6 LIGFILAVVSSAFIGSSFIIKKK----GLRKAGA--------------NGARAGSGGYGYLLEPLWWVGMFTMIVGEIAN 67 (236)
Q Consensus 6 ~igv~lAl~sa~~~a~g~vlqk~----~~~~~~~--------------~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~ 67 (236)
--|+++++.+.++.+.=--.-|. +..|.-. .-.|.-++.++..|+|+=+....+..+-...|
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~n 85 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLN 85 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 35788888888886665444333 1111000 00011112344677776666655555555677
Q ss_pred HHHHhhcCch---hhhchhh-HHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeee
Q 026598 68 FVAYIYAPAV---LVTPLGA-LSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (236)
Q Consensus 68 ~~al~~ap~s---lV~Pl~~-~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~ 123 (236)
.--+-++|-. +=+.+|= +..++|.++++.++|||+++.+|+.+.+..+|+..-...
T Consensus 86 W~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 86 WWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 7778888765 3233332 344678899999999999999999999999999765443
No 51
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.19 E-value=0.21 Score=42.50 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--------------------CCCCCC--CCcccc-c-chhHHHHHHH
Q 026598 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN--------------------GARAGS--GGYGYL-L-EPLWWVGMFT 59 (236)
Q Consensus 4 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~--------------------~~~~~~--~~~~~~-~-~~~W~~G~~~ 59 (236)
+...|+..-+.+.++.+...+.|++..++.+.. ..++++ ...+.+ . ++.+|.-...
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 445677777777777788888888864432110 000000 011111 1 2223333344
Q ss_pred HHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhh
Q 026598 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGST 118 (236)
Q Consensus 60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~ 118 (236)
...|..+-...+.+++.....=......+++.+++.++.+|+++...|.|+.++..|+.
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 56677777888888999999999999999999999999999999999999999998864
No 52
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=93.61 E-value=0.44 Score=43.97 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCc
Q 026598 53 WWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (236)
Q Consensus 53 W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~ 127 (236)
|-+=..++.+-+-.+++++...|++.=++...+-++.++++...+|+||+++++|...++...|+.++=...+++
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~ 169 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP 169 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 333445777887799999999999999999999999999999999999999999999999999998876443433
No 53
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=92.87 E-value=1.1 Score=41.20 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=41.4
Q ss_pred HHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhe
Q 026598 69 VAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (236)
Q Consensus 69 ~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~ 119 (236)
.++.-.++.--+=.+.+--++..+++..+++|++|..+++|.++++.|+.+
T Consensus 295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 355555555555566677788899999999999999999999999999865
No 54
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=91.35 E-value=0.53 Score=42.11 Aligned_cols=61 Identities=23% Similarity=0.380 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchh----hHHHHHhhhhhe
Q 026598 59 TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTM 119 (236)
Q Consensus 59 ~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~----~g~~li~~G~~~ 119 (236)
+...|+++.+.+-.-.-+..=-|++..+++.+.+-+-+++||+=+++|+ .|+++++.|.++
T Consensus 204 ~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 204 IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 3467888888888888888999999999999999999999999999885 788888888764
No 55
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=89.36 E-value=0.78 Score=35.51 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=62.1
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhchh-hHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 45 YGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 45 ~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
+..+.+...|+=+.+.--|+...+.-++-+|.++-.|.. +++..|+++++..+-.|.-.++...|+.++++|+.+.+
T Consensus 47 ~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 47 KTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 345666777888888888899999999999999999986 56889999988776444455666899999999987653
No 56
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=88.54 E-value=2.4 Score=32.59 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=38.4
Q ss_pred hhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCC
Q 026598 79 VTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (236)
Q Consensus 79 V~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~ 126 (236)
-+.-|.+-+..++......-|.++++.||.|...|.+|+.+ +.++|.
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~v-il~~pR 107 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAV-ILFGPR 107 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceee-eEeCCC
Confidence 34567788888899999999999999999999999999554 455553
No 57
>PRK02237 hypothetical protein; Provisional
Probab=88.02 E-value=3 Score=32.26 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=37.8
Q ss_pred hchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecC
Q 026598 80 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (236)
Q Consensus 80 ~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~ 125 (236)
+.-|.+-++.+.+..+..-|+|+++.|++|..+|..|+.++. ++|
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~-~~p 107 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM-YAP 107 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe-ecC
Confidence 445677788888999999999999999999999999987653 555
No 58
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=86.79 E-value=1.3 Score=40.02 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-CchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCccC
Q 026598 51 PLWWVGMFTMIVGEIANFVAYIYA-PAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (236)
Q Consensus 51 ~~W~~G~~~~~~g~~~~~~al~~a-p~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~~~ 129 (236)
+.|..=+.++-.-++.|=.|+.|. |..+=.=+-+.+++.|.+++..++|+|-+.++...++++.+|+++...++.++..
T Consensus 65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 345555555445566777777764 3333334567899999999999999999999999999999999988887766543
No 59
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=85.89 E-value=1.1 Score=34.58 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=37.6
Q ss_pred hchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecC
Q 026598 80 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (236)
Q Consensus 80 ~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~ 125 (236)
+.=|.+=++.+.+..+..-|+|+++.|++|..+|..|+.++ .++|
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI-~~~P 105 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII-LFAP 105 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe-EecC
Confidence 34567778888899999999999999999999999998765 4444
No 60
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.08 E-value=1.6 Score=33.26 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhe
Q 026598 84 ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (236)
Q Consensus 84 ~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~ 119 (236)
.+++..=.+||.+++||++++..++|..++..|+.+
T Consensus 77 VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 77 VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 466777788999999999999999999888877654
No 61
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=81.51 E-value=13 Score=32.43 Aligned_cols=109 Identities=22% Similarity=0.351 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--------------------CCCCCC--CCcccccchhHHH--HHHH
Q 026598 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN--------------------GARAGS--GGYGYLLEPLWWV--GMFT 59 (236)
Q Consensus 4 ~~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~--------------------~~~~~~--~~~~~~~~~~W~~--G~~~ 59 (236)
+..+|+.+.+.++++.+.+-+..+|-.++.+.+ ..++++ .....++...|+. =+.+
T Consensus 111 ~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~ 190 (244)
T PF04142_consen 111 NPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL 190 (244)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH
Confidence 467999999999999999999988876664320 000000 1112233222222 2233
Q ss_pred HHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHH
Q 026598 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLL 112 (236)
Q Consensus 60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l 112 (236)
...|.+.-...+.+++-.+=.=-.+++++.+.+++..+.+.+++..-.+|+.+
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 45666666667777777666666788899999999999999999887777654
No 62
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=80.61 E-value=11 Score=33.56 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC--C------------------CCCc----ccccchhHHHHHH-HH
Q 026598 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA--G------------------SGGY----GYLLEPLWWVGMF-TM 60 (236)
Q Consensus 6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~--~------------------~~~~----~~~~~~~W~~G~~-~~ 60 (236)
..|+.+.+.+-++.+.-.+.|+|-.++.+.+..+. . .+.. -..+.|..+.-+. ..
T Consensus 153 ~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s 232 (303)
T PF08449_consen 153 ALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS 232 (303)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH
Confidence 34999999999999999999999765544321100 0 0000 0122343333222 22
Q ss_pred HHHHHHH---HHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhe
Q 026598 61 IVGEIAN---FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (236)
Q Consensus 61 ~~g~~~~---~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~ 119 (236)
..+.+++ +.....-.....+-.+.+--..+.+++.++.+++++..+|.|.+++..|..+
T Consensus 233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 3333333 2233344444555566666788899999999999999999999999999865
No 63
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=79.59 E-value=0.62 Score=41.64 Aligned_cols=59 Identities=27% Similarity=0.493 Sum_probs=51.7
Q ss_pred HHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCC
Q 026598 68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (236)
Q Consensus 68 ~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~ 126 (236)
.-|+.+....-++-|..-+...-.+++++++|.|-+..++.|++.|+.|+++++...-+
T Consensus 96 V~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ 154 (336)
T KOG2766|consen 96 VKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH 154 (336)
T ss_pred eeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeec
Confidence 55777788888888999999999999999999999999999999999999888765443
No 64
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=75.86 E-value=2.9 Score=32.24 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHhhhhhe
Q 026598 85 LSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (236)
Q Consensus 85 ~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~ 119 (236)
+++..=.+++.+++||++++...+|-++++.++.+
T Consensus 71 itL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 71 ITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 44555567899999999999999998888766543
No 65
>PRK13499 rhamnose-proton symporter; Provisional
Probab=72.35 E-value=13 Score=34.38 Aligned_cols=41 Identities=17% Similarity=0.387 Sum_probs=29.6
Q ss_pred hh-hHHHHHHHHHHHHHhccccc--cch----hhHHHHHhhhhheeeee
Q 026598 82 LG-ALSIIVSAVLAHFMLNEKLQ--KMG----MLGCLLCVVGSTMIVLH 123 (236)
Q Consensus 82 l~-~~~lv~~~~~a~~~l~e~~~--~~~----~~g~~li~~G~~~~v~~ 123 (236)
+. +.+++++.+-+- ++||+=+ +++ +.|+++++.|.+++...
T Consensus 295 l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 295 LHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 44 666666666555 4999877 555 69999999999877543
No 66
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=66.01 E-value=58 Score=29.87 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCCc
Q 026598 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (236)
Q Consensus 60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~~ 127 (236)
-.++.-++..||.+.+.-...=-=+.=++-..++..+.-|+|.+.+|.+-..++..|+.++..+..++
T Consensus 93 n~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 93 NTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 45777889999998876654434444456667788888999999999999999999999998885544
No 67
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=59.21 E-value=19 Score=31.26 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeec
Q 026598 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (236)
Q Consensus 63 g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~ 124 (236)
..-....|+.-.+++.++.+.+..--|-.+++...+|+|+..-+.+...+.+.|++++....
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 34467889999999999999999999999999999999999999999999999988775443
No 68
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=56.05 E-value=56 Score=29.51 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=51.1
Q ss_pred cccchhHHHHHHHHHHHHHHH----HHHHhhcCchhhhchhhHHHHHHHHHHHH-Hhccc--cccch----hhHHHHHhh
Q 026598 47 YLLEPLWWVGMFTMIVGEIAN----FVAYIYAPAVLVTPLGALSIIVSAVLAHF-MLNEK--LQKMG----MLGCLLCVV 115 (236)
Q Consensus 47 ~~~~~~W~~G~~~~~~g~~~~----~~al~~ap~slV~Pl~~~~lv~~~~~a~~-~l~e~--~~~~~----~~g~~li~~ 115 (236)
-+++|.-|.=+..++...+.| =.|+..-+.++|.|+--.......+++-. +.+|. .+..+ ..|+..++.
T Consensus 206 ~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~ 285 (300)
T PF05653_consen 206 QFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIII 285 (300)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 455566444333333333333 34888999999999998888776666555 55653 33434 378888999
Q ss_pred hhheeeeecCC
Q 026598 116 GSTMIVLHAPL 126 (236)
Q Consensus 116 G~~~~v~~~~~ 126 (236)
|+.++..+.++
T Consensus 286 GV~lL~~~~~~ 296 (300)
T PF05653_consen 286 GVFLLSSSKDK 296 (300)
T ss_pred hhheeeccCch
Confidence 98877544443
No 69
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=53.85 E-value=1.1e+02 Score=24.26 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHH----HhccccccchhhHHHHHhhhhhe
Q 026598 85 LSIIVSAVLAHF----MLNEKLQKMGMLGCLLCVVGSTM 119 (236)
Q Consensus 85 ~~lv~~~~~a~~----~l~e~~~~~~~~g~~li~~G~~~ 119 (236)
-.++.+.++-++ .-|+|++.++..|..+++.|+.+
T Consensus 100 GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 100 GQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 344555666665 45789999999999999999863
No 70
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=53.40 E-value=15 Score=33.64 Aligned_cols=68 Identities=21% Similarity=0.336 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhhee
Q 026598 52 LWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (236)
Q Consensus 52 ~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~ 120 (236)
.-..|.. ..+|-++.-.++..-|.+.+|-+-+...++++++++.+.+|+.++..+.-...++.|+.+-
T Consensus 86 llpl~~~-~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ia 153 (316)
T KOG1441|consen 86 LLPLGLV-FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIA 153 (316)
T ss_pred HHHHHHH-HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEe
Confidence 3334443 3577888889999999999999999999999999999999999999887777777776554
No 71
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=53.10 E-value=1.1e+02 Score=28.92 Aligned_cols=121 Identities=14% Similarity=0.225 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC-CCCC--C---------------------CCCcccccchh----HHHH
Q 026598 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN-GARA--G---------------------SGGYGYLLEPL----WWVG 56 (236)
Q Consensus 5 ~~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~-~~~~--~---------------------~~~~~~~~~~~----W~~G 56 (236)
..+|-++|+.||++.|+=.++-||...+++++ +.+. | .++.+.-.++. -..|
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ 324 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNN 324 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence 47899999999999999999988865554211 1000 0 11111111111 1234
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecC
Q 026598 57 MFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (236)
Q Consensus 57 ~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~ 125 (236)
.+.-+++.-++..|.......+++-=.++++..+.+.=..+-+.+++....+|...+..|-+.+-....
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 444556666777777766666666555666666666555566889999999999999999776644443
No 72
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=51.58 E-value=1.2e+02 Score=25.62 Aligned_cols=43 Identities=28% Similarity=0.589 Sum_probs=28.5
Q ss_pred HHHHHHHHHH---HHHHHHHhhc---------CchhhhchhhHHHHHH--HHHHHHH
Q 026598 55 VGMFTMIVGE---IANFVAYIYA---------PAVLVTPLGALSIIVS--AVLAHFM 97 (236)
Q Consensus 55 ~G~~~~~~g~---~~~~~al~~a---------p~slV~Pl~~~~lv~~--~~~a~~~ 97 (236)
.||.+-++|. ++..++-+.. |-..++|+..+.+..| .++||+.
T Consensus 113 ~Gmllt~lG~~a~vG~L~ak~lsqp~g~~~~~~~~~i~~lDvf~vqAn~n~i~AHfv 169 (183)
T PF12263_consen 113 VGMLLTLLGAQATVGTLVAKALSQPQGAAIYNPSQPIRALDVFVVQANTNTILAHFV 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4666655553 4555555555 7788999999888654 6777653
No 73
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=50.30 E-value=12 Score=29.49 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccc
Q 026598 143 PAFLLYVGSVVAVALVLILYCAPR 166 (236)
Q Consensus 143 ~~f~~y~~~~~~~~~~l~~~~~~r 166 (236)
|.+++-+++.++++++++++..+|
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHH
Confidence 444433333333333333334443
No 74
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=48.24 E-value=2e+02 Score=25.67 Aligned_cols=133 Identities=19% Similarity=0.231 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---chhhhchhhH--HHHHHHHHHHH---HhccccccchhhHHHHHhhhhheeeeecCC
Q 026598 55 VGMFTMIVGEIANFVAYIYAP---AVLVTPLGAL--SIIVSAVLAHF---MLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (236)
Q Consensus 55 ~G~~~~~~g~~~~~~al~~ap---~slV~Pl~~~--~lv~~~~~a~~---~l~e~~~~~~~~g~~li~~G~~~~v~~~~~ 126 (236)
+|+..+..|.+.......... +.++.|.-++ +.+...+.+.. ..|-|+...+.-=+-+...|+..+.-++.-
T Consensus 68 IGmlalGmG~iaal~G~~i~~~~~~~~~~PI~~liia~iiG~vvG~lan~vigMkIPiM~~smtels~agaLailG~s~a 147 (264)
T PRK01030 68 IGMLALGMGTIAALAGVAIGDALGIVLAGPIVALIIAAIIGAVVGKLANNVVGMKIPIMERSMTELSGAGALAILGFSTA 147 (264)
T ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 788887777777777776653 3477786542 22333333222 223333333333333444444433333333
Q ss_pred ccCcCCHHHHHHHhcchhHHHHHHHHHHHHHHHH--hhhccccCCcchhhhhHhHhhhhhHHH
Q 026598 127 EESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI--LYCAPRYGQTNILIYIGICSVIGSLTV 187 (236)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~--~~~~~r~~~~~~l~~~~~~g~lg~~tv 187 (236)
-....+.+.+.+...++.++.-.++...+.+.-= --..|...|+|-+.....||.+.-.-.
T Consensus 148 ~~Gsf~~~~~~~~vi~~G~IAl~FI~~~mAIlHPFNACLGP~E~q~RTL~la~e~G~ls~ii~ 210 (264)
T PRK01030 148 IAGSFDFDAIITSVIATGFIALLFILGGMAILHPFNACLGPNESQDRTLTLAVECGFLSMIIF 210 (264)
T ss_pred HhCcccHHHHHHHHhcccHHHHHHHHHHHHhcCccccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence 3334677888888888888655444444332100 013455667888888888887664433
No 75
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=45.04 E-value=6.2 Score=35.16 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchh----hHHHHHhhhhheeee
Q 026598 62 VGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTMIVL 122 (236)
Q Consensus 62 ~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~----~g~~li~~G~~~~v~ 122 (236)
.|++..+.|=.-.-...=-.+...+++.+.+=.-+++|||=|++|+ .|+.+++.|++++..
T Consensus 221 ~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 221 IGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred hhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 4444444444444444445667777888888888999999999995 889999999877643
No 76
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=44.92 E-value=65 Score=30.17 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=35.8
Q ss_pred hhhhchhhHHHHHHHHHHHHHhcc---------------------------ccccchhhHHHHHhhhhheeeeecCCccC
Q 026598 77 VLVTPLGALSIIVSAVLAHFMLNE---------------------------KLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (236)
Q Consensus 77 slV~Pl~~~~lv~~~~~a~~~l~e---------------------------~~~~~~~~g~~li~~G~~~~v~~~~~~~~ 129 (236)
++.-|-.-++.+.+++.+.+.-|| +++++.+.++.+...|++.++.++.-++.
T Consensus 167 ~V~iPat~ig~~~~a~~~~~~GkeL~~Dp~yq~rl~~g~~~~~~~~~~~~~~~~~~Ak~SV~iFl~gv~~VV~~g~f~~l 246 (364)
T PF03605_consen 167 AVTIPATLIGVLVAAFVSSRRGKELDDDPEYQERLADGLVKPPIKEESTEKELPPSAKLSVLIFLLGVVAVVLYGSFPSL 246 (364)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHhccccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHcccc
Confidence 455677777888888877765222 33445578888888898888777654443
No 77
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=43.23 E-value=2.1e+02 Score=24.51 Aligned_cols=58 Identities=28% Similarity=0.426 Sum_probs=36.0
Q ss_pred cchhHHHHHHHHHHHHH---HHHHHHhhcCchhh--hchhhHHHHHHHHHH-HHHhccccccch
Q 026598 49 LEPLWWVGMFTMIVGEI---ANFVAYIYAPAVLV--TPLGALSIIVSAVLA-HFMLNEKLQKMG 106 (236)
Q Consensus 49 ~~~~W~~G~~~~~~g~~---~~~~al~~ap~slV--~Pl~~~~lv~~~~~a-~~~l~e~~~~~~ 106 (236)
+||.||=+++...+... .-+.+-+|.|.|+= -|=-+..++-+.+++ ++++|+|.+.+.
T Consensus 157 qr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfylkkk~NIqs 220 (226)
T COG4858 157 QRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYLKKKKNIQS 220 (226)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 46788877766544443 34567788888863 344445555555555 566788877653
No 78
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=42.22 E-value=25 Score=31.36 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecC
Q 026598 85 LSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (236)
Q Consensus 85 ~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~ 125 (236)
.-=.|+.+.+..+.+.+++.++|+|+.++..+...=+..+.
T Consensus 276 TRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 276 TRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 34478889999999999999999999999999877666654
No 79
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=41.94 E-value=64 Score=24.36 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=29.9
Q ss_pred CHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhccccCCcchhhhhHhHhhhhhH
Q 026598 132 SVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185 (236)
Q Consensus 132 ~~~~l~~~~~~~~f~~y~~~~~~~~~~l~~~~~~r~~~~~~l~~~~~~g~lg~~ 185 (236)
.-+++++.+.++.-..|-..+..+...+ -..+...+.++.+.-+.+||.++-.
T Consensus 7 ~W~~ll~wl~~~~~~~~~a~lA~~mA~L-R~~Y~g~~~~r~llea~lCg~lal~ 59 (100)
T PF05106_consen 7 FWAQLLAWLQSHWPQIYGALLAFVMALL-RGAYGGGSWRRRLLEALLCGLLALF 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 4456666666444444443333322222 1233555678889999999987644
No 80
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.66 E-value=6.8 Score=35.49 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhh
Q 026598 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGS 117 (236)
Q Consensus 60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~ 117 (236)
++++...|-..|.+-|.+.=+-=-++..+||.+++..++|+|-+..-..+|.+|+.|-
T Consensus 112 fi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF 169 (347)
T KOG1442|consen 112 FILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGF 169 (347)
T ss_pred eeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehh
Confidence 3455567777888888887777778899999999999999999999888998888884
No 81
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=37.79 E-value=3e+02 Score=24.61 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-c-hhhhchhhHHHHHHHHHHHH-------HhccccccchhhHHHHHhhhhheeeeecC
Q 026598 55 VGMFTMIVGEIANFVAYIYAP-A-VLVTPLGALSIIVSAVLAHF-------MLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (236)
Q Consensus 55 ~G~~~~~~g~~~~~~al~~ap-~-slV~Pl~~~~lv~~~~~a~~-------~l~e~~~~~~~~g~~li~~G~~~~v~~~~ 125 (236)
+|+..+..|.+.....+.+.- . .++.|+-+ ++++++.+.. ..|-|+...+..=+-+.+.|+..+.-++.
T Consensus 75 IGm~alG~G~vaal~G~~i~g~i~~~a~PI~a--lIia~IiG~vvG~la~~vi~MkIPiM~~~mtels~agaLailG~s~ 152 (265)
T TIGR01148 75 IGMMSLGMGILAAVAGLALGGNTPAIAAPIIA--LVVAAIIGGVVGVLANKVIGMKIPIMERCMTEISCAGTLALLGLSV 152 (265)
T ss_pred HHHHHHhHHHHHHHHHHHccccchHHHHHHHH--HHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888877722 2 26677643 3333333332 23334433343334444444444433333
Q ss_pred CccCcCCHHHHHHHhcchhHHHHHHHHHHHHHHHH--hhhccccCCcchhhhhHhHhhhhhHHHHHHH
Q 026598 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI--LYCAPRYGQTNILIYIGICSVIGSLTVMSVK 191 (236)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~--~~~~~r~~~~~~l~~~~~~g~lg~~tvl~aK 191 (236)
--....+.+.+.+...++.++.-.++...+.+.-= --..|...|+|.+.....||.+.-+..-..|
T Consensus 153 aiaGsf~~~~~~~~vi~~G~IAl~Fi~~~mAilHPFNACLGPnE~q~RTL~La~e~G~ls~ii~~i~s 220 (265)
T TIGR01148 153 AIAGSFTWQAVISYVIANGYIALLFIIGGMAILHPFNACLGPNESQDRTLWLAVECGFITGFVSSLHE 220 (265)
T ss_pred HHhCcccHHHHHHHHhcccHHHHHHHHHHHHhcCcchhccCCCcchhHHHHHHHHHhHHHHHHHHHHH
Confidence 33345677888888888888655444443332100 0134666678888888888877655444333
No 82
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=37.76 E-value=3.1e+02 Score=24.76 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 026598 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANF 68 (236)
Q Consensus 6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~ 68 (236)
..++...+++.+..-.++...|++.++..+.+.+-+ ....-..+-.+|..+.+.|.+...
T Consensus 46 ~~~i~~~ii~lvl~iia~~~lr~GF~~L~~~~~~~~---iG~tG~~Lilig~il~iig~i~~i 105 (285)
T PF06157_consen 46 IVAIISLIIGLVLGIIAFYRLRRGFRILSSYDRDVG---IGKTGATLILIGYILIIIGAILAI 105 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc---chhhhhHHHHHHHHHHHHHHHHHH
Confidence 345555666666666777778888777654322211 112223344456555555555433
No 83
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=35.12 E-value=2.7e+02 Score=24.29 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCc-h--------hhhchhhHHHHHHHHHHHHHhccccccchhhHHHHH
Q 026598 65 IANFVAYIYAPA-V--------LVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLC 113 (236)
Q Consensus 65 ~~~~~al~~ap~-s--------lV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li 113 (236)
..++.|+..-+. . +.-=+.=.++..+++++..-.+||++.+..+-+++.
T Consensus 105 g~sf~AlltPDl~~~~~p~l~~~lffitH~svfls~v~~~vhfreRpgksgl~~svl~ 162 (236)
T COG5522 105 GISFMALLTPDLQYLQVPWLEFLLFFITHISVFLSAVILIVHFRERPGKSGLVMSVLV 162 (236)
T ss_pred hHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHH
Confidence 346677766665 2 222345567788899999999999999987555443
No 84
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=34.54 E-value=2.3e+02 Score=22.68 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=39.1
Q ss_pred CCHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhcccc-CC-cc----hhhhhHhHhhhhhHHHHHHHHHHHHHHH
Q 026598 131 NSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRY-GQ-TN----ILIYIGICSVIGSLTVMSVKAIGIAIKL 199 (236)
Q Consensus 131 ~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~~~~~~r~-~~-~~----~l~~~~~~g~lg~~tvl~aK~~~~~l~~ 199 (236)
.|.+|-.+++ ++.++.|..+..++...++++...++ +. |. ..........+++......|..+...|+
T Consensus 55 Tn~~Ea~ell-s~~~~~~~l~~~vlP~~~l~~~~i~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~Rn 128 (156)
T PF08019_consen 55 TNTAEASELL-SWKLILWLLLLGVLPALLLWRVRIKKRSWKRELLRRLLLILLSLLVIAGIAFLFYKDYASFFRN 128 (156)
T ss_pred cCHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 4778888876 57777887777776544444332221 11 11 1222222234555567778888888874
No 85
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=34.34 E-value=64 Score=20.43 Aligned_cols=11 Identities=45% Similarity=0.918 Sum_probs=7.8
Q ss_pred cchhHHHHHHH
Q 026598 49 LEPLWWVGMFT 59 (236)
Q Consensus 49 ~~~~W~~G~~~ 59 (236)
|-|+|++|.+.
T Consensus 7 RIPLWlVgtv~ 17 (40)
T PF01788_consen 7 RIPLWLVGTVA 17 (40)
T ss_dssp SS-HHHHHHHH
T ss_pred cccchHHHHHH
Confidence 56999998764
No 86
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=32.52 E-value=3.7e+02 Score=24.06 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCc---hhhhchhhH--HHHHHHHHHHH---HhccccccchhhHHHHHhhhhheeeeecCC
Q 026598 55 VGMFTMIVGEIANFVAYIYAPA---VLVTPLGAL--SIIVSAVLAHF---MLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (236)
Q Consensus 55 ~G~~~~~~g~~~~~~al~~ap~---slV~Pl~~~--~lv~~~~~a~~---~l~e~~~~~~~~g~~li~~G~~~~v~~~~~ 126 (236)
+|+..+..|.+.....+..... .++.|+.++ +.++..+.+.. ..|-|+...+.-=+-+...|+..+.-++..
T Consensus 75 IGm~alGmG~ia~l~G~~i~~~~~~~l~~PI~~~iiA~IiG~vvG~la~~vi~MkIPim~~s~tels~agaL~ilG~s~a 154 (262)
T PF04211_consen 75 IGMMALGMGIIAALAGLAIGGIGIPNLAGPIIALIIAAIIGAVVGLLANKVIGMKIPIMEQSMTELSGAGALAILGFSAA 154 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHcccccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888877777776654 566666543 22333332222 233334333333344444555444444443
Q ss_pred ccCcCCHHHHHHHhcchhHHHHHHHHHHHHHHHH--hhhccccCCcchhhhhHhHhhhhhHH
Q 026598 127 EESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI--LYCAPRYGQTNILIYIGICSVIGSLT 186 (236)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~--~~~~~r~~~~~~l~~~~~~g~lg~~t 186 (236)
-....+.+++.+...++.++.-.++.-.+.+.-= --..|...|+|-+..+..||.+.-..
T Consensus 155 iaGsf~~~~i~~~vi~~G~IAl~Fi~~~mAIlHPFNACLGPnE~q~RTL~la~~~G~ls~ii 216 (262)
T PF04211_consen 155 IAGSFDFDSIITSVINTGYIALLFIIGGMAILHPFNACLGPNESQDRTLTLAVECGFLSMII 216 (262)
T ss_pred HhccccHHHHHHHHhccCHHHHHHHHHHHHhcCccccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 4455677888888888888654444433322100 01345666788888888888766443
No 87
>PF15196 Harakiri: Activator of apoptosis harakiri; PDB: 2L58_A 2L5B_A.
Probab=30.31 E-value=1e+02 Score=22.36 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHH
Q 026598 11 LAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGM 57 (236)
Q Consensus 11 lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~ 57 (236)
--+.++-+.++|.-+|++.+++..+...........|-.++-|++..
T Consensus 30 aq~ta~rlkalgdel~~r~mrrrar~r~~~~~~lpa~rarw~wlcaa 76 (92)
T PF15196_consen 30 AQLTAARLKALGDELHRRTMRRRARSRRPAPAALPAYRARWPWLCAA 76 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------TTS-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhhHHHHHH
Confidence 34677888999999999988665443111122233455667787643
No 88
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=29.93 E-value=44 Score=30.34 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccC----------------C-CCCCCCCcccccchhHHHHHHHH--HHHHHHH
Q 026598 7 IGFILAVVSSAFIGSSFIIKKKGLRKAGAN----------------G-ARAGSGGYGYLLEPLWWVGMFTM--IVGEIAN 67 (236)
Q Consensus 7 igv~lAl~sa~~~a~g~vlqk~~~~~~~~~----------------~-~~~~~~~~~~~~~~~W~~G~~~~--~~g~~~~ 67 (236)
-|...|+.|.++.|-=.++.|+--++++.. + ..-++-..++..+.+|..+.+.. -+|.++-
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIll 270 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILL 270 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHH
Confidence 355667777777666666665532222210 0 00122234566666676543321 2455555
Q ss_pred HHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 68 ~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
..++..=.+==|+=..-..++++.+.--.+.||-.|.+.|.|.++++...+.+.
T Consensus 271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 566655333334446677899999999999999999999999988876665544
No 89
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=29.47 E-value=49 Score=29.62 Aligned_cols=79 Identities=15% Similarity=0.293 Sum_probs=61.5
Q ss_pred cccchhHHHHHHH---HHHHHHHHHHHHhhcCchhhhchh-hHHHHHHHHHHHHHhccccccchh----hHHHHHhhhhh
Q 026598 47 YLLEPLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGST 118 (236)
Q Consensus 47 ~~~~~~W~~G~~~---~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~~~~~~----~g~~li~~G~~ 118 (236)
.+.-..|..|++. -..|...|+-|...-..|--.|+. +..++-+.+++.+.++|=-+..+. .+.++++.|..
T Consensus 53 ~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~ 132 (288)
T COG4975 53 ELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIY 132 (288)
T ss_pred ccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhhe
Confidence 3334567777764 357788889999999999999996 577899999999999998777653 67788888987
Q ss_pred eeeeecC
Q 026598 119 MIVLHAP 125 (236)
Q Consensus 119 ~~v~~~~ 125 (236)
+-..-.+
T Consensus 133 lTs~~~~ 139 (288)
T COG4975 133 LTSKQDR 139 (288)
T ss_pred Eeeeecc
Confidence 7666554
No 90
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=27.76 E-value=1.4e+02 Score=25.53 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHH
Q 026598 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFM 97 (236)
Q Consensus 60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~ 97 (236)
.++++.+...++...|++.++|..-+..+++.+++.+.
T Consensus 218 t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 218 TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 46788899999999999999999999999999998764
No 91
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=25.95 E-value=2.5e+02 Score=22.24 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=27.3
Q ss_pred CCHHHHHHHhcchhHHHHHHHHHHHHHHHHhh-hcc-ccCCcchhhhhHhHhhhhhHHHHHHHHH
Q 026598 131 NSVQEIWVLATQPAFLLYVGSVVAVALVLILY-CAP-RYGQTNILIYIGICSVIGSLTVMSVKAI 193 (236)
Q Consensus 131 ~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~~~-~~~-r~~~~~~l~~~~~~g~lg~~tvl~aK~~ 193 (236)
.++++-++-+++-...+.-+++.++..+...| +.. .++.. -.-+=.++|+++|..++.+-.+
T Consensus 66 ~t~~~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~~~~~~~-~~~~Rvllgl~~al~vlvAEv~ 129 (142)
T PF11712_consen 66 DTPAQELKSVKRQLSTVFNILVSVFAVFFAGWYWAGYSFGGW-SFPYRVLLGLFGALLVLVAEVV 129 (142)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444333333333333333223 322 12111 1233356666777666655544
No 92
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=24.46 E-value=2e+02 Score=27.33 Aligned_cols=72 Identities=15% Similarity=0.276 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeecCC-------------ccCcCCHHHHHHHhcchhHHHH
Q 026598 82 LGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL-------------EESLNSVQEIWVLATQPAFLLY 148 (236)
Q Consensus 82 l~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~~~-------------~~~~~~~~~l~~~~~~~~f~~y 148 (236)
-|+++...++.++=++...-....-|++....++=.++.....|+ ++++.+.+|+.+.+++|.|...
T Consensus 146 wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~ 225 (412)
T PF01306_consen 146 WGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFF 225 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHH
T ss_pred HhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHH
Confidence 466777777776666666555555566554332222222222211 1112355688999999988655
Q ss_pred HHHHH
Q 026598 149 VGSVV 153 (236)
Q Consensus 149 ~~~~~ 153 (236)
...+.
T Consensus 226 ~l~v~ 230 (412)
T PF01306_consen 226 VLFVI 230 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 93
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=24.45 E-value=35 Score=31.04 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhccccccchhhHHHHHhhhhheee
Q 026598 88 IVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (236)
Q Consensus 88 v~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v 121 (236)
.+++++|-.+.+.++|+..|+|+.++..|..+..
T Consensus 280 FvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 280 FVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999999999998764
No 94
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.64 E-value=1.8e+02 Score=21.14 Aligned_cols=22 Identities=14% Similarity=0.392 Sum_probs=14.8
Q ss_pred cccchhHHHHHHHHHHHHHHHH
Q 026598 47 YLLEPLWWVGMFTMIVGEIANF 68 (236)
Q Consensus 47 ~~~~~~W~~G~~~~~~g~~~~~ 68 (236)
-+|+|.||++++..++-.+-++
T Consensus 7 R~kN~~~w~ali~~i~l~vq~~ 28 (84)
T PF04531_consen 7 RFKNKAFWVALISAILLLVQQV 28 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHH
Confidence 4688999998876554444333
No 95
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=22.01 E-value=4.1e+02 Score=22.82 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC-CCCCc------ccccchhHHHHHHHHHHHH
Q 026598 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA-GSGGY------GYLLEPLWWVGMFTMIVGE 64 (236)
Q Consensus 6 ~igv~lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~-~~~~~------~~~~~~~W~~G~~~~~~g~ 64 (236)
.+|+.+.+++-.+-++++.-++ ..++.++++.+- .++.+ .|+-+-.+|.|..++..+.
T Consensus 122 ~~g~~l~~~g~~~E~~AD~Q~~-~fk~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~ 186 (235)
T PF06966_consen 122 ILGIALFLIGFLLETVADQQKY-RFKKDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISS 186 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhh
Confidence 5777888888777777775444 455555432111 11222 3556667888887765554
No 96
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=21.35 E-value=2.7e+02 Score=24.87 Aligned_cols=20 Identities=5% Similarity=0.086 Sum_probs=10.2
Q ss_pred ccccccchhh--HHHHHhhhhh
Q 026598 99 NEKLQKMGML--GCLLCVVGST 118 (236)
Q Consensus 99 ~e~~~~~~~~--g~~li~~G~~ 118 (236)
.||++++... |..+...|..
T Consensus 263 ~~r~g~~~~~~~~~~~~~~~~~ 284 (392)
T PRK10473 263 LGIFKPRTLMLTSQVLFLAAGI 284 (392)
T ss_pred HHhcCHHHHHHHHHHHHHHHHH
Confidence 3577776653 4344344433
No 97
>COG2855 Predicted membrane protein [Function unknown]
Probab=20.75 E-value=2.9e+02 Score=25.67 Aligned_cols=79 Identities=10% Similarity=0.154 Sum_probs=55.6
Q ss_pred ccccchhHHHHHHHHHHH-HHHHHHHHhhcCchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhheeeeec
Q 026598 46 GYLLEPLWWVGMFTMIVG-EIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (236)
Q Consensus 46 ~~~~~~~W~~G~~~~~~g-~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~ 124 (236)
..-++++-..|+.+++.. .+.++...+..-..+..-.-+.+++++..+++ ++|-.-+..-..|+..-++|..-+..-.
T Consensus 65 ~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~-~lgld~~~a~Lia~GssICGasAiaA~~ 143 (334)
T COG2855 65 TFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGK-LLGLDKKLALLIAAGSSICGASAIAATA 143 (334)
T ss_pred hhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHccchhhHHHHHHHhC
Confidence 345556666899998777 46777777777766666666777777777777 5555555555688888888887666555
Q ss_pred C
Q 026598 125 P 125 (236)
Q Consensus 125 ~ 125 (236)
|
T Consensus 144 p 144 (334)
T COG2855 144 P 144 (334)
T ss_pred C
Confidence 5
Done!