Query 026598
Match_columns 236
No_of_seqs 138 out of 617
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 17:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.0 5.1E-09 1.8E-13 79.9 10.5 98 11-123 6-104 (110)
2 2i68_A Protein EMRE; transmemb 98.8 7.9E-09 2.7E-13 82.1 7.0 99 11-124 6-105 (137)
3 3arc_J Photosystem II reaction 31.9 44 0.0015 20.2 2.9 11 49-59 7-17 (40)
4 3arc_L Photosystem II reaction 13.4 2.2E+02 0.0076 16.7 3.2 24 208-231 14-37 (37)
5 2hac_A T-cell surface glycopro 10.2 1.8E+02 0.0063 16.8 2.1 23 83-105 9-31 (33)
6 3o7q_A L-fucose-proton symport 9.3 6.7E+02 0.023 20.8 6.6 19 45-63 252-270 (438)
7 2gfp_A EMRD, multidrug resista 8.1 7.8E+02 0.027 20.0 6.4 36 45-80 193-228 (375)
8 3mk7_C Cytochrome C oxidase, C 6.2 1.1E+03 0.038 19.5 8.1 22 51-72 55-77 (311)
9 4a2n_B Isoprenylcysteine carbo 6.2 9.5E+02 0.033 18.7 8.0 21 43-64 119-139 (194)
10 2wdq_D Succinate dehydrogenase 5.9 7.3E+02 0.025 17.6 4.4 44 107-152 21-64 (115)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.96 E-value=5.1e-09 Score=79.94 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhch-hhHHHHH
Q 026598 11 LAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIV 89 (236)
Q Consensus 11 lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~ 89 (236)
+-+.+.++-+.|....|++. + ..+.+.++.+...++++..+...++...|.+.+.|+ .+++.++
T Consensus 6 ~l~~a~~~e~~~~~~lK~s~------~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~ 70 (110)
T 3b5d_A 6 YLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL 70 (110)
T ss_pred HHHHHHHHHHHHHHHHHhcc------C---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHH
Confidence 44567777888888888851 0 112344566777888999999999999999999999 8999999
Q ss_pred HHHHHHHHhccccccchhhHHHHHhhhhheeeee
Q 026598 90 SAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (236)
Q Consensus 90 ~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~ 123 (236)
+.+++.+++||+++..++.|+.+++.|+..+-..
T Consensus 71 ~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999877544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.81 E-value=7.9e-09 Score=82.06 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhch-hhHHHHH
Q 026598 11 LAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIV 89 (236)
Q Consensus 11 lAl~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~ 89 (236)
+-+.+.++-+.|....|++. + ..+.+.++.|+..+++++.+...++...|++.+.|+ ..++.++
T Consensus 6 ~Ll~ail~ev~~~~~lK~s~------g---------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~ 70 (137)
T 2i68_A 6 YLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL 70 (137)
T ss_dssp HHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc------c---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Confidence 34556777888888888862 0 011234567888899999999999999999999999 9999999
Q ss_pred HHHHHHHHhccccccchhhHHHHHhhhhheeeeec
Q 026598 90 SAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (236)
Q Consensus 90 ~~~~a~~~l~e~~~~~~~~g~~li~~G~~~~v~~~ 124 (236)
+.+++.+++||+++..++.|+++++.|+.++...+
T Consensus 71 ~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999998875443
No 3
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=31.92 E-value=44 Score=20.23 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.8
Q ss_pred cchhHHHHHHH
Q 026598 49 LEPLWWVGMFT 59 (236)
Q Consensus 49 ~~~~W~~G~~~ 59 (236)
|-|+|++|.+.
T Consensus 7 RiPLWlvgtv~ 17 (40)
T 3arc_J 7 RIPLWIVATVA 17 (40)
T ss_dssp SSCHHHHHHHH
T ss_pred cccEEeeeeeh
Confidence 56999998764
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=13.44 E-value=2.2e+02 Score=16.72 Aligned_cols=24 Identities=4% Similarity=0.099 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q 026598 208 KCIETWIFAMVALTCVITQLNYLN 231 (236)
Q Consensus 208 ~~~~~y~~~~~~~~~~~~Q~~~LN 231 (236)
+.-..|-++++.+.++++-.|++|
T Consensus 14 RTSLy~GLLlifvlavlFssyffN 37 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhhhhccC
Confidence 455567778888888888888887
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=10.23 E-value=1.8e+02 Score=16.77 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHhccccccc
Q 026598 83 GALSIIVSAVLAHFMLNEKLQKM 105 (236)
Q Consensus 83 ~~~~lv~~~~~a~~~l~e~~~~~ 105 (236)
.++=++...++...+.+||+.+.
T Consensus 9 DgiL~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 9 DGILFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445667788888888888764
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=9.33 E-value=6.7e+02 Score=20.79 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=10.9
Q ss_pred cccccchhHHHHHHHHHHH
Q 026598 45 YGYLLEPLWWVGMFTMIVG 63 (236)
Q Consensus 45 ~~~~~~~~W~~G~~~~~~g 63 (236)
++.+|+|.+|.........
T Consensus 252 ~~~~~~~~~~~~~~~~~~~ 270 (438)
T 3o7q_A 252 SRLARIRHWRWAVLAQFCY 270 (438)
T ss_dssp HHHTTCSHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHH
Confidence 3466777777655544333
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=8.15 E-value=7.8e+02 Score=19.95 Aligned_cols=36 Identities=6% Similarity=-0.102 Sum_probs=18.1
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhh
Q 026598 45 YGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVT 80 (236)
Q Consensus 45 ~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~ 80 (236)
++.+|+|..+...............-..+.|..+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (375)
T 2gfp_A 193 KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGA 228 (375)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667766654444333333333344555655544
No 8
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=6.22 E-value=1.1e+03 Score=19.51 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=12.3
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHh
Q 026598 51 PLWWVGMF-TMIVGEIANFVAYI 72 (236)
Q Consensus 51 ~~W~~G~~-~~~~g~~~~~~al~ 72 (236)
|+||.-+. ..++..+..++.|-
T Consensus 55 p~ww~~~f~~~iv~~~~y~~~yp 77 (311)
T 3mk7_C 55 PRWWFLLFIGTLVFGILYLVLYP 77 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh
Confidence 77887544 34555555555443
No 9
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=6.19 E-value=9.5e+02 Score=18.66 Aligned_cols=21 Identities=14% Similarity=0.517 Sum_probs=13.1
Q ss_pred CCcccccchhHHHHHHHHHHHH
Q 026598 43 GGYGYLLEPLWWVGMFTMIVGE 64 (236)
Q Consensus 43 ~~~~~~~~~~W~~G~~~~~~g~ 64 (236)
+..++.|.|.. .|..+...|.
T Consensus 119 G~y~~vRHP~Y-~G~~l~~~g~ 139 (194)
T 4a2n_B 119 GIYKNIRHPMY-AHLWLWVITQ 139 (194)
T ss_dssp STTTTBSSHHH-HHHHHHHHHH
T ss_pred CcchhccCccH-HHHHHHHHHH
Confidence 56678999985 4544444443
No 10
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=5.85 E-value=7.3e+02 Score=17.61 Aligned_cols=44 Identities=7% Similarity=-0.099 Sum_probs=24.1
Q ss_pred hhHHHHHhhhhheeeeecCCccCcCCHHHHHHHhcchhHHHHHHHH
Q 026598 107 MLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSV 152 (236)
Q Consensus 107 ~~g~~li~~G~~~~v~~~~~~~~~~~~~~l~~~~~~~~f~~y~~~~ 152 (236)
.-|+++...-...+..... .++.+.|+..+.+.+|.+-......
T Consensus 21 iSgv~L~~l~~~~l~~~~~--~~~~~y~~~~~~~~~p~~~i~~~l~ 64 (115)
T 2wdq_D 21 ATAIVLTLYIIYMVGFFAT--SGELTYEVWIGFFASAFTKVFTLLA 64 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--cCccCHHHHHHHHHChHHHHHHHHH
Confidence 3555555544333322222 2344679999998888764443333
Done!