Query 026598
Match_columns 236
No_of_seqs 138 out of 617
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 17:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026598.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026598hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 31.0 24 0.0017 19.1 2.9 11 49-59 1-11 (34)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 16.2 80 0.0058 17.1 3.2 24 208-231 14-37 (37)
3 d2p7tc1 f.14.1.1 (C:86-119) Po 9.2 94 0.0069 16.2 2.0 24 77-100 10-33 (34)
4 d1nekd_ f.21.2.2 (D:) Succinat 7.7 2.6E+02 0.019 18.2 4.6 46 107-154 19-64 (113)
5 d1rzhh2 f.23.10.1 (H:11-35) Ph 7.5 1.6E+02 0.011 14.6 2.5 12 208-219 6-17 (26)
6 d3cx5e2 f.23.12.1 (E:31-86) Ir 6.7 2.3E+02 0.017 16.7 3.3 31 170-201 22-52 (56)
7 d1ppje2 f.23.12.1 (E:1-69) Iro 5.7 3.1E+02 0.022 16.8 3.6 32 170-202 32-63 (69)
8 d1egwa_ d.88.1.1 (A:) Myocyte 5.6 2.3E+02 0.016 17.4 2.9 43 98-140 21-68 (71)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 4.2 1.1E+02 0.0081 19.6 0.6 6 123-128 4-9 (91)
10 d1pv7a_ f.38.1.2 (A:) Lactose 3.9 5.8E+02 0.042 18.1 5.0 73 46-118 2-86 (417)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=31.02 E-value=24 Score=19.14 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.5
Q ss_pred cchhHHHHHHH
Q 026598 49 LEPLWWVGMFT 59 (236)
Q Consensus 49 ~~~~W~~G~~~ 59 (236)
|-|+|++|.+.
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 46999998764
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.21 E-value=80 Score=17.11 Aligned_cols=24 Identities=4% Similarity=0.099 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q 026598 208 KCIETWIFAMVALTCVITQLNYLN 231 (236)
Q Consensus 208 ~~~~~y~~~~~~~~~~~~Q~~~LN 231 (236)
+.-..|-++++.+.++++-.+|+|
T Consensus 14 rtsLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcC
Confidence 345557777788888888888887
No 3
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=9.19 E-value=94 Score=16.23 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=15.0
Q ss_pred hhhhchhhHHHHHHHHHHHHHhcc
Q 026598 77 VLVTPLGALSIIVSAVLAHFMLNE 100 (236)
Q Consensus 77 slV~Pl~~~~lv~~~~~a~~~l~e 100 (236)
..|+.+.+.+++++++-.++.-+|
T Consensus 10 vmvagits~glv~aa~atwfvgre 33 (34)
T d2p7tc1 10 VMVAGITSFGLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccchhhhHHHHHHHHhhccc
Confidence 456667777888877744444333
No 4
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=7.73 E-value=2.6e+02 Score=18.18 Aligned_cols=46 Identities=7% Similarity=-0.115 Sum_probs=28.1
Q ss_pred hhHHHHHhhhhheeeeecCCccCcCCHHHHHHHhcchhHHHHHHHHHH
Q 026598 107 MLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVA 154 (236)
Q Consensus 107 ~~g~~li~~G~~~~v~~~~~~~~~~~~~~l~~~~~~~~f~~y~~~~~~ 154 (236)
.-+++++.....++...... +..+.|+..+.+.+|.......+.++
T Consensus 19 vSAv~l~~l~~~~~~~~~~~--~~~~y~~~~~~~~~~~~~il~~l~l~ 64 (113)
T d1nekd_ 19 ATAIVLTLYIIYMVGFFATS--GELTYEVWIGFFASAFTKVFTLLALF 64 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--SSCCHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHhChHHHHHHHHHHH
Confidence 45666666555444333332 33577999999999987655544444
No 5
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.53 E-value=1.6e+02 Score=14.59 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=7.4
Q ss_pred chhHHHHHHHHH
Q 026598 208 KCIETWIFAMVA 219 (236)
Q Consensus 208 ~~~~~y~~~~~~ 219 (236)
.-|.+|.++..+
T Consensus 6 aiw~fw~ffall 17 (26)
T d1rzhh2 6 AIYSFWIFLAGL 17 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356777766555
No 6
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.74 E-value=2.3e+02 Score=16.70 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=20.8
Q ss_pred cchhhhhHhHhhhhhHHHHHHHHHHHHHHHHh
Q 026598 170 TNILIYIGICSVIGSLTVMSVKAIGIAIKLTL 201 (236)
Q Consensus 170 ~~~l~~~~~~g~lg~~tvl~aK~~~~~l~~~~ 201 (236)
++.+-|...+ ..|-.++--+|+.++.+..++
T Consensus 22 ~r~fsY~mvG-s~g~~~a~~AKstV~~FlssM 52 (56)
T d3cx5e2 22 GRSYAYFMVG-AMGLLSSAGAKSTVETFISSM 52 (56)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred cceEEEEeee-hhHHHHHHHHHHHHHHHHHhc
Confidence 4456665544 366667788999998776544
No 7
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.72 E-value=3.1e+02 Score=16.78 Aligned_cols=32 Identities=6% Similarity=0.000 Sum_probs=21.5
Q ss_pred cchhhhhHhHhhhhhHHHHHHHHHHHHHHHHhc
Q 026598 170 TNILIYIGICSVIGSLTVMSVKAIGIAIKLTLE 202 (236)
Q Consensus 170 ~~~l~~~~~~g~lg~~tvl~aK~~~~~l~~~~~ 202 (236)
|+.+-| .++|..|..++-.+|.++..+..+++
T Consensus 32 Rk~fsY-l~~g~~~v~~ay~AK~~V~~fvssmS 63 (69)
T d1ppje2 32 RKGFSY-LVTATTTVGVAYAAKNVVSQFVSSMS 63 (69)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hceehh-hhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 346767 44444566677789999887776554
No 8
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.58 E-value=2.3e+02 Score=17.39 Aligned_cols=43 Identities=7% Similarity=0.059 Sum_probs=24.3
Q ss_pred hccccccchhhHHHHHhhhh-heeeeecCCccC----cCCHHHHHHHh
Q 026598 98 LNEKLQKMGMLGCLLCVVGS-TMIVLHAPLEES----LNSVQEIWVLA 140 (236)
Q Consensus 98 l~e~~~~~~~~g~~li~~G~-~~~v~~~~~~~~----~~~~~~l~~~~ 140 (236)
-|++-+......=+.+.+|+ +.+++++|++.. ..+.+++++.|
T Consensus 21 sKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry 68 (71)
T d1egwa_ 21 TKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred hHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHH
Confidence 34444444445555666677 556677776543 23566666654
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.19 E-value=1.1e+02 Score=19.59 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.8
Q ss_pred ecCCcc
Q 026598 123 HAPLEE 128 (236)
Q Consensus 123 ~~~~~~ 128 (236)
+.|+++
T Consensus 4 ldP~gp 9 (91)
T d1fftb2 4 LDPKGQ 9 (91)
T ss_dssp SSCCSC
T ss_pred cCCCCH
Confidence 345554
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.88 E-value=5.8e+02 Score=18.15 Aligned_cols=73 Identities=14% Similarity=0.051 Sum_probs=0.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhcCchhhhchhhHHHHHHHHHHHH------------HhccccccchhhHHHHH
Q 026598 46 GYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHF------------MLNEKLQKMGMLGCLLC 113 (236)
Q Consensus 46 ~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~------------~l~e~~~~~~~~g~~li 113 (236)
.++|+|..|.=...+.......-....+.|..+.+-++...--.+.+.+.. .+-||.++|...-....
T Consensus 2 ~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~ 81 (417)
T d1pv7a_ 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT 81 (417)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHH
T ss_pred CcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Q ss_pred hhhhh
Q 026598 114 VVGST 118 (236)
Q Consensus 114 ~~G~~ 118 (236)
..+..
T Consensus 82 ~~~~~ 86 (417)
T d1pv7a_ 82 GMLVM 86 (417)
T ss_dssp HHHHT
T ss_pred HHHHH
Done!