Query 026599
Match_columns 236
No_of_seqs 188 out of 448
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 10:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1318 Helix loop helix trans 99.3 5.7E-12 1.2E-16 120.4 11.4 81 78-159 235-321 (411)
2 cd00083 HLH Helix-loop-helix d 99.3 2.1E-12 4.5E-17 89.7 5.9 52 78-130 6-59 (60)
3 smart00353 HLH helix loop heli 99.3 3E-12 6.5E-17 87.6 6.0 50 81-131 1-52 (53)
4 PF00010 HLH: Helix-loop-helix 99.3 2.9E-12 6.3E-17 89.1 5.2 49 79-127 4-55 (55)
5 KOG1319 bHLHZip transcription 98.8 7.8E-09 1.7E-13 91.2 7.5 76 79-155 65-146 (229)
6 KOG2483 Upstream transcription 98.4 2.5E-06 5.5E-11 76.7 9.5 78 75-153 58-137 (232)
7 KOG4304 Transcriptional repres 98.3 2.4E-07 5.3E-12 83.8 3.0 55 77-132 33-94 (250)
8 KOG3561 Aryl-hydrocarbon recep 98.3 7.6E-07 1.7E-11 91.4 6.0 51 78-129 22-75 (803)
9 KOG2588 Predicted DNA-binding 98.0 5.7E-06 1.2E-10 86.0 5.1 77 64-142 265-341 (953)
10 KOG0561 bHLH transcription fac 98.0 7.8E-06 1.7E-10 76.7 4.6 63 80-143 64-127 (373)
11 PRK15422 septal ring assembly 97.7 0.00039 8.5E-09 53.8 8.8 60 116-175 13-72 (79)
12 COG3074 Uncharacterized protei 97.5 0.0012 2.5E-08 50.6 8.8 60 116-175 13-72 (79)
13 KOG3960 Myogenic helix-loop-he 97.3 0.0006 1.3E-08 62.8 6.5 56 80-135 122-177 (284)
14 PF06005 DUF904: Protein of un 97.1 0.0043 9.3E-08 46.9 8.8 55 120-174 3-64 (72)
15 KOG3910 Helix loop helix trans 97.1 0.0011 2.5E-08 65.8 7.2 56 77-132 516-584 (632)
16 PLN03217 transcription factor 97.1 0.0014 3E-08 51.8 6.0 58 85-143 16-78 (93)
17 KOG4029 Transcription factor H 96.9 0.00096 2.1E-08 58.7 4.0 59 77-135 110-170 (228)
18 PF06005 DUF904: Protein of un 96.7 0.015 3.2E-07 44.0 8.3 58 116-173 13-70 (72)
19 TIGR02894 DNA_bind_RsfA transc 96.6 0.014 3.1E-07 50.4 8.7 60 116-175 82-144 (161)
20 smart00338 BRLZ basic region l 95.5 0.047 1E-06 39.2 5.7 39 120-158 25-63 (65)
21 PF07106 TBPIP: Tat binding pr 95.4 0.064 1.4E-06 45.0 7.1 55 123-177 81-137 (169)
22 PRK15422 septal ring assembly 95.4 0.12 2.6E-06 40.2 7.9 52 120-171 3-54 (79)
23 KOG2264 Exostosin EXT1L [Signa 95.3 0.14 3.1E-06 52.5 10.4 95 115-209 87-187 (907)
24 PF00170 bZIP_1: bZIP transcri 95.3 0.063 1.4E-06 38.6 5.9 35 121-155 26-60 (64)
25 PF06156 DUF972: Protein of un 95.2 0.11 2.4E-06 41.9 7.6 53 125-177 5-57 (107)
26 KOG4005 Transcription factor X 95.2 0.27 5.8E-06 45.6 10.9 96 65-174 55-150 (292)
27 PF12325 TMF_TATA_bd: TATA ele 94.7 0.25 5.4E-06 40.6 8.4 51 118-168 13-63 (120)
28 TIGR03752 conj_TIGR03752 integ 94.5 0.22 4.7E-06 49.5 9.2 34 116-149 61-94 (472)
29 PRK13169 DNA replication intia 94.4 0.22 4.8E-06 40.6 7.5 51 125-175 5-55 (110)
30 PRK10884 SH3 domain-containing 94.2 0.27 5.9E-06 43.6 8.3 85 78-174 87-171 (206)
31 COG4026 Uncharacterized protei 94.2 0.32 6.9E-06 44.9 8.8 58 118-175 132-189 (290)
32 COG3883 Uncharacterized protei 93.9 0.41 8.8E-06 44.4 9.1 64 111-174 35-98 (265)
33 PRK10884 SH3 domain-containing 93.9 1 2.2E-05 40.0 11.3 24 149-172 132-155 (206)
34 KOG3560 Aryl-hydrocarbon recep 93.8 0.048 1E-06 55.2 3.2 45 79-124 28-75 (712)
35 PF08317 Spc7: Spc7 kinetochor 93.8 0.86 1.9E-05 42.3 11.2 15 88-102 186-200 (325)
36 PRK11637 AmiB activator; Provi 93.7 0.88 1.9E-05 43.4 11.3 61 114-174 68-128 (428)
37 TIGR02449 conserved hypothetic 93.6 1 2.2E-05 33.7 9.1 57 121-177 7-63 (65)
38 PF04880 NUDE_C: NUDE protein, 93.6 0.1 2.3E-06 45.2 4.5 46 123-172 2-47 (166)
39 PF13870 DUF4201: Domain of un 93.6 0.6 1.3E-05 39.4 9.0 71 116-186 72-142 (177)
40 COG3883 Uncharacterized protei 93.5 0.36 7.7E-06 44.8 7.9 58 119-176 36-93 (265)
41 PF12329 TMF_DNA_bd: TATA elem 93.3 0.78 1.7E-05 34.6 8.2 58 118-175 9-66 (74)
42 PF10224 DUF2205: Predicted co 93.2 0.98 2.1E-05 35.0 8.8 45 124-168 19-63 (80)
43 PRK13169 DNA replication intia 93.1 0.63 1.4E-05 37.9 8.0 51 120-170 7-57 (110)
44 PF02183 HALZ: Homeobox associ 93.0 0.33 7.1E-06 33.7 5.3 38 135-172 5-42 (45)
45 PRK04406 hypothetical protein; 93.0 1.4 3E-05 33.5 9.2 52 125-176 8-59 (75)
46 PRK13729 conjugal transfer pil 92.9 2.2 4.7E-05 42.7 12.9 57 121-177 69-125 (475)
47 COG3074 Uncharacterized protei 92.9 0.73 1.6E-05 35.6 7.5 52 120-171 3-54 (79)
48 PF08614 ATG16: Autophagy prot 92.9 0.85 1.8E-05 39.3 9.0 82 86-174 88-169 (194)
49 PRK02119 hypothetical protein; 92.8 1.6 3.4E-05 32.9 9.2 53 124-176 5-57 (73)
50 PF06156 DUF972: Protein of un 92.8 0.69 1.5E-05 37.3 7.7 57 110-170 1-57 (107)
51 PHA02562 46 endonuclease subun 92.7 0.83 1.8E-05 44.0 9.6 77 87-170 331-407 (562)
52 smart00787 Spc7 Spc7 kinetocho 92.6 1.5 3.1E-05 41.2 10.7 15 88-102 181-195 (312)
53 TIGR02449 conserved hypothetic 92.6 1.1 2.4E-05 33.6 8.0 54 123-176 2-55 (65)
54 KOG3558 Hypoxia-inducible fact 92.6 0.082 1.8E-06 54.6 2.6 41 83-124 53-96 (768)
55 PRK04325 hypothetical protein; 92.5 1.6 3.5E-05 32.9 9.0 53 124-176 5-57 (74)
56 PF04111 APG6: Autophagy prote 92.3 0.55 1.2E-05 43.8 7.5 19 156-174 113-131 (314)
57 PRK00846 hypothetical protein; 92.0 2 4.3E-05 33.1 9.0 52 125-176 10-61 (77)
58 PF04102 SlyX: SlyX; InterPro 92.0 0.87 1.9E-05 33.6 6.8 51 126-176 2-52 (69)
59 PRK00295 hypothetical protein; 91.9 2.1 4.5E-05 31.8 8.8 50 127-176 4-53 (68)
60 PF14197 Cep57_CLD_2: Centroso 91.9 1.3 2.8E-05 33.2 7.7 52 123-174 7-65 (69)
61 PF10234 Cluap1: Clusterin-ass 91.7 0.7 1.5E-05 42.8 7.4 60 124-183 165-225 (267)
62 PRK13729 conjugal transfer pil 91.6 1.1 2.5E-05 44.6 9.2 60 114-173 69-128 (475)
63 KOG2391 Vacuolar sorting prote 91.5 0.91 2E-05 43.8 8.1 44 135-178 225-268 (365)
64 PF00170 bZIP_1: bZIP transcri 91.5 1.6 3.4E-05 31.3 7.5 36 137-172 28-63 (64)
65 PRK11637 AmiB activator; Provi 91.3 1.3 2.9E-05 42.2 9.1 25 149-173 96-120 (428)
66 PF10211 Ax_dynein_light: Axon 91.3 2.3 5E-05 37.0 9.8 16 87-102 60-75 (189)
67 PF08172 CASP_C: CASP C termin 91.1 1.2 2.5E-05 40.7 8.1 55 123-177 81-135 (248)
68 PRK02793 phi X174 lysis protei 91.1 2.9 6.3E-05 31.4 8.9 51 126-176 6-56 (72)
69 PF02183 HALZ: Homeobox associ 90.9 0.83 1.8E-05 31.7 5.4 36 140-175 3-38 (45)
70 PF14662 CCDC155: Coiled-coil 90.7 1.6 3.5E-05 38.9 8.4 53 125-177 78-130 (193)
71 PF12325 TMF_TATA_bd: TATA ele 90.7 2.9 6.3E-05 34.4 9.4 47 112-158 14-60 (120)
72 TIGR02231 conserved hypothetic 90.7 1.9 4E-05 42.2 9.7 86 87-176 72-172 (525)
73 KOG4447 Transcription factor T 90.7 0.16 3.4E-06 44.2 2.0 49 78-127 80-129 (173)
74 PHA03011 hypothetical protein; 90.4 2.1 4.6E-05 35.2 8.2 60 115-174 58-117 (120)
75 KOG0996 Structural maintenance 90.3 4 8.7E-05 44.9 12.2 83 91-175 804-897 (1293)
76 PF08317 Spc7: Spc7 kinetochor 90.2 1.6 3.4E-05 40.6 8.3 10 93-102 170-179 (325)
77 PF13815 Dzip-like_N: Iguana/D 90.2 2 4.2E-05 34.5 7.9 56 114-172 62-117 (118)
78 PF09789 DUF2353: Uncharacteri 90.2 3.5 7.6E-05 39.2 10.6 45 109-153 67-111 (319)
79 COG4467 Regulator of replicati 90.1 1.5 3.2E-05 36.2 7.1 50 125-174 5-54 (114)
80 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.9 3.2 7E-05 33.8 9.0 59 117-175 55-117 (132)
81 KOG1962 B-cell receptor-associ 89.8 3.5 7.7E-05 37.3 9.9 59 116-174 153-211 (216)
82 PRK00736 hypothetical protein; 89.7 4.3 9.3E-05 30.1 8.7 47 130-176 7-53 (68)
83 PF07106 TBPIP: Tat binding pr 89.6 1.3 2.8E-05 37.2 6.6 30 125-154 76-105 (169)
84 PF10805 DUF2730: Protein of u 89.6 1.7 3.7E-05 34.5 7.0 47 126-172 47-95 (106)
85 PF13851 GAS: Growth-arrest sp 89.5 2.8 6E-05 36.9 8.9 60 114-173 20-79 (201)
86 PF04977 DivIC: Septum formati 89.5 1.8 3.8E-05 31.2 6.5 37 137-173 26-62 (80)
87 PF02403 Seryl_tRNA_N: Seryl-t 89.5 2.9 6.4E-05 32.3 8.1 51 124-174 39-92 (108)
88 PF05529 Bap31: B-cell recepto 89.4 2.2 4.9E-05 36.3 8.0 13 116-128 117-129 (192)
89 PF11559 ADIP: Afadin- and alp 89.3 9.5 0.0002 31.3 11.4 20 83-102 49-68 (151)
90 KOG3559 Transcriptional regula 89.2 0.31 6.8E-06 48.3 3.0 42 83-125 8-52 (598)
91 PHA02562 46 endonuclease subun 89.0 5.5 0.00012 38.4 11.3 16 87-102 307-322 (562)
92 PF04420 CHD5: CHD5-like prote 89.0 2.4 5.2E-05 35.9 7.8 24 117-140 36-59 (161)
93 PF10146 zf-C4H2: Zinc finger- 88.9 3.3 7.3E-05 37.4 9.2 24 120-143 31-54 (230)
94 PRK13922 rod shape-determining 88.9 1.6 3.6E-05 39.0 7.1 37 133-173 74-110 (276)
95 COG5570 Uncharacterized small 88.8 1.6 3.4E-05 32.0 5.6 44 128-171 5-55 (57)
96 PF07716 bZIP_2: Basic region 88.4 1.2 2.6E-05 31.1 4.7 26 145-170 28-53 (54)
97 PF04156 IncA: IncA protein; 88.4 4.1 8.8E-05 34.3 8.8 88 83-174 85-176 (191)
98 PF08172 CASP_C: CASP C termin 88.3 2.7 5.8E-05 38.4 8.2 62 110-171 75-136 (248)
99 PF05377 FlaC_arch: Flagella a 88.2 3.2 6.9E-05 30.3 6.9 44 131-174 3-46 (55)
100 PF10186 Atg14: UV radiation r 88.0 3.8 8.3E-05 35.9 8.7 13 162-174 125-137 (302)
101 TIGR02894 DNA_bind_RsfA transc 87.9 3.1 6.7E-05 36.2 7.9 51 120-170 96-146 (161)
102 PF11559 ADIP: Afadin- and alp 87.7 9.1 0.0002 31.4 10.3 52 119-170 36-87 (151)
103 PF10498 IFT57: Intra-flagella 87.6 3.5 7.5E-05 39.5 8.8 25 160-184 332-356 (359)
104 PRK00888 ftsB cell division pr 87.6 2 4.3E-05 34.3 6.1 45 123-174 29-73 (105)
105 PF07798 DUF1640: Protein of u 87.3 5.6 0.00012 33.9 9.1 14 89-102 30-43 (177)
106 PF04977 DivIC: Septum formati 87.3 2.6 5.6E-05 30.3 6.1 33 122-154 18-50 (80)
107 PF11932 DUF3450: Protein of u 87.3 4.8 0.00011 35.8 9.1 19 156-174 77-95 (251)
108 PF05667 DUF812: Protein of un 87.2 2.3 5.1E-05 43.2 7.8 59 117-175 324-382 (594)
109 PTZ00454 26S protease regulato 87.2 2.3 5.1E-05 40.8 7.5 57 117-180 11-67 (398)
110 PF04728 LPP: Lipoprotein leuc 87.0 5 0.00011 29.4 7.4 44 123-173 5-48 (56)
111 COG1340 Uncharacterized archae 87.0 6.8 0.00015 37.0 10.2 73 87-173 28-100 (294)
112 smart00338 BRLZ basic region l 87.0 2.3 5E-05 30.4 5.6 33 139-171 30-62 (65)
113 KOG4196 bZIP transcription fac 86.9 4.2 9.2E-05 34.5 7.9 51 122-173 69-119 (135)
114 PF07989 Microtub_assoc: Micro 86.9 4.7 0.0001 30.6 7.5 52 123-174 2-61 (75)
115 PF10473 CENP-F_leu_zip: Leuci 86.8 6.3 0.00014 33.4 9.0 41 135-175 52-92 (140)
116 KOG4797 Transcriptional regula 86.8 2.7 5.8E-05 34.9 6.5 32 135-166 67-98 (123)
117 PF05266 DUF724: Protein of un 86.7 5.1 0.00011 35.2 8.7 34 123-156 112-145 (190)
118 KOG0250 DNA repair protein RAD 86.7 3.3 7.1E-05 45.0 8.8 48 129-176 409-456 (1074)
119 PF06632 XRCC4: DNA double-str 86.5 5.8 0.00013 37.9 9.6 43 115-157 131-173 (342)
120 PRK09039 hypothetical protein; 86.5 4.3 9.4E-05 38.3 8.7 55 114-168 130-184 (343)
121 PF04728 LPP: Lipoprotein leuc 86.4 4.9 0.00011 29.4 7.0 27 122-148 11-37 (56)
122 TIGR00606 rad50 rad50. This fa 86.2 5.6 0.00012 43.4 10.5 85 87-175 992-1087(1311)
123 PF04156 IncA: IncA protein; 86.1 11 0.00023 31.7 10.2 61 114-174 123-183 (191)
124 PF14662 CCDC155: Coiled-coil 86.0 5.3 0.00012 35.7 8.5 61 115-175 54-114 (193)
125 PF10224 DUF2205: Predicted co 85.7 5.2 0.00011 31.0 7.3 48 128-175 16-63 (80)
126 PF14197 Cep57_CLD_2: Centroso 85.7 6.4 0.00014 29.5 7.6 41 129-169 27-67 (69)
127 PF09304 Cortex-I_coil: Cortex 85.7 5.4 0.00012 32.7 7.7 50 123-172 39-88 (107)
128 KOG3650 Predicted coiled-coil 85.6 3.4 7.3E-05 34.0 6.5 41 128-168 63-103 (120)
129 PRK09039 hypothetical protein; 85.4 6 0.00013 37.4 9.1 49 126-174 135-183 (343)
130 PF07200 Mod_r: Modifier of ru 85.1 8 0.00017 31.6 8.6 62 116-177 29-90 (150)
131 PF10186 Atg14: UV radiation r 85.1 15 0.00032 32.2 10.9 22 153-174 123-144 (302)
132 PTZ00454 26S protease regulato 85.0 2.4 5.1E-05 40.8 6.3 42 120-161 21-62 (398)
133 KOG4603 TBP-1 interacting prot 85.0 4.5 9.7E-05 36.1 7.5 55 123-177 88-144 (201)
134 PF06785 UPF0242: Uncharacteri 84.9 4.4 9.5E-05 39.4 7.9 72 114-185 120-193 (401)
135 KOG3584 cAMP response element 84.9 1 2.2E-05 42.8 3.7 29 121-149 312-340 (348)
136 PF12718 Tropomyosin_1: Tropom 84.7 8 0.00017 32.3 8.6 34 118-151 11-44 (143)
137 TIGR00606 rad50 rad50. This fa 84.7 6.3 0.00014 43.1 10.0 84 85-172 849-932 (1311)
138 PF06632 XRCC4: DNA double-str 84.5 6.5 0.00014 37.6 8.9 38 122-159 145-182 (342)
139 PF08826 DMPK_coil: DMPK coile 84.3 14 0.00031 27.2 8.7 55 115-169 5-59 (61)
140 PF00038 Filament: Intermediat 84.1 6.3 0.00014 35.5 8.3 13 122-134 217-229 (312)
141 COG0216 PrfA Protein chain rel 84.0 11 0.00025 36.5 10.3 91 89-179 10-106 (363)
142 COG4026 Uncharacterized protei 83.9 15 0.00032 34.3 10.5 89 79-168 101-189 (290)
143 KOG3119 Basic region leucine z 83.8 5.2 0.00011 36.6 7.7 28 124-151 218-245 (269)
144 KOG0250 DNA repair protein RAD 83.7 11 0.00025 41.0 11.1 88 85-175 371-462 (1074)
145 PF04325 DUF465: Protein of un 83.6 3.6 7.8E-05 28.4 5.1 14 155-168 33-46 (49)
146 PF06103 DUF948: Bacterial pro 83.6 17 0.00036 27.4 9.2 34 122-155 27-60 (90)
147 PF15070 GOLGA2L5: Putative go 83.6 5 0.00011 41.1 8.2 46 130-175 17-62 (617)
148 KOG0946 ER-Golgi vesicle-tethe 83.5 5.4 0.00012 42.5 8.5 60 115-174 658-717 (970)
149 COG2433 Uncharacterized conser 83.4 4.1 8.9E-05 42.0 7.5 44 116-159 417-460 (652)
150 PF05266 DUF724: Protein of un 83.4 8.6 0.00019 33.8 8.6 50 125-174 128-177 (190)
151 COG3937 Uncharacterized conser 83.4 7.7 0.00017 31.9 7.7 58 116-173 41-107 (108)
152 PF08614 ATG16: Autophagy prot 83.3 6.7 0.00014 33.8 7.8 49 123-171 132-180 (194)
153 smart00787 Spc7 Spc7 kinetocho 83.2 6.6 0.00014 36.9 8.3 12 91-102 163-174 (312)
154 COG4942 Membrane-bound metallo 82.9 12 0.00025 37.1 10.1 47 125-171 63-109 (420)
155 TIGR00219 mreC rod shape-deter 82.8 4.3 9.3E-05 37.3 6.8 15 133-147 71-85 (283)
156 TIGR00219 mreC rod shape-deter 82.8 7.4 0.00016 35.8 8.3 45 116-163 61-105 (283)
157 COG1256 FlgK Flagellar hook-as 82.7 10 0.00022 38.4 9.9 79 85-165 107-186 (552)
158 PF10482 CtIP_N: Tumour-suppre 82.6 4.7 0.0001 33.6 6.2 65 91-165 54-119 (120)
159 KOG3433 Protein involved in me 82.5 7.6 0.00017 34.9 7.9 48 97-145 47-105 (203)
160 PF14282 FlxA: FlxA-like prote 82.3 6 0.00013 31.5 6.6 54 120-173 18-75 (106)
161 KOG0612 Rho-associated, coiled 81.8 34 0.00075 38.1 13.8 9 29-37 396-404 (1317)
162 KOG4571 Activating transcripti 81.7 16 0.00034 34.7 10.1 50 118-174 238-287 (294)
163 PF10805 DUF2730: Protein of u 81.7 13 0.00029 29.5 8.4 53 124-176 38-92 (106)
164 TIGR01554 major_cap_HK97 phage 81.6 5.5 0.00012 37.2 7.1 62 87-152 4-65 (378)
165 KOG3647 Predicted coiled-coil 81.4 5.5 0.00012 37.8 7.0 60 125-184 109-169 (338)
166 PF07888 CALCOCO1: Calcium bin 81.4 12 0.00025 38.2 9.7 37 139-175 421-457 (546)
167 PF04111 APG6: Autophagy prote 81.4 12 0.00027 34.9 9.3 14 162-175 112-125 (314)
168 PF07798 DUF1640: Protein of u 81.3 14 0.0003 31.5 8.9 13 90-102 55-67 (177)
169 PF14282 FlxA: FlxA-like prote 81.3 8.1 0.00018 30.7 7.0 54 116-169 21-78 (106)
170 COG2433 Uncharacterized conser 81.1 5.7 0.00012 41.0 7.5 40 116-155 424-463 (652)
171 TIGR03752 conj_TIGR03752 integ 81.1 7.2 0.00016 39.1 8.0 55 121-175 73-142 (472)
172 PF05377 FlaC_arch: Flagella a 81.1 5.9 0.00013 28.9 5.6 37 138-174 3-39 (55)
173 PF15035 Rootletin: Ciliary ro 80.7 13 0.00028 32.5 8.7 60 114-173 60-119 (182)
174 PF04102 SlyX: SlyX; InterPro 80.7 9.5 0.00021 28.1 6.8 50 121-170 4-53 (69)
175 PRK13922 rod shape-determining 80.7 11 0.00025 33.6 8.6 47 113-163 61-107 (276)
176 PF07889 DUF1664: Protein of u 80.7 10 0.00022 31.7 7.6 50 125-174 65-114 (126)
177 PRK02224 chromosome segregatio 80.5 14 0.00029 38.1 10.1 41 134-174 257-297 (880)
178 PRK00888 ftsB cell division pr 80.4 6 0.00013 31.5 6.0 32 139-170 31-62 (105)
179 PRK05771 V-type ATP synthase s 80.4 7.2 0.00016 39.3 8.0 18 85-102 49-66 (646)
180 PF09789 DUF2353: Uncharacteri 80.3 7.8 0.00017 36.9 7.7 49 129-177 134-183 (319)
181 PF09304 Cortex-I_coil: Cortex 80.3 12 0.00027 30.6 7.8 38 126-163 35-72 (107)
182 TIGR02209 ftsL_broad cell divi 80.2 12 0.00026 27.6 7.2 33 130-162 26-58 (85)
183 PF15294 Leu_zip: Leucine zipp 80.2 5.5 0.00012 37.3 6.5 58 112-170 117-174 (278)
184 PF05008 V-SNARE: Vesicle tran 80.2 8 0.00017 28.3 6.2 58 110-173 21-78 (79)
185 PRK14127 cell division protein 80.0 11 0.00023 30.8 7.4 26 149-174 44-69 (109)
186 KOG0977 Nuclear envelope prote 80.0 7.9 0.00017 39.4 8.0 37 139-175 152-188 (546)
187 PF14988 DUF4515: Domain of un 80.0 13 0.00028 33.0 8.5 59 112-172 142-200 (206)
188 KOG3119 Basic region leucine z 79.9 8.7 0.00019 35.2 7.7 54 122-175 195-248 (269)
189 PF00038 Filament: Intermediat 79.8 37 0.0008 30.6 11.6 15 160-174 121-135 (312)
190 PF13851 GAS: Growth-arrest sp 79.7 18 0.00038 31.8 9.2 46 110-156 83-128 (201)
191 PF01166 TSC22: TSC-22/dip/bun 79.6 2.7 5.8E-05 31.2 3.5 27 137-163 16-42 (59)
192 PRK05431 seryl-tRNA synthetase 79.6 16 0.00035 35.4 9.8 52 123-174 37-98 (425)
193 TIGR02209 ftsL_broad cell divi 79.6 16 0.00036 26.8 7.8 34 123-156 26-59 (85)
194 COG4942 Membrane-bound metallo 79.5 10 0.00022 37.5 8.4 37 123-159 68-104 (420)
195 COG1579 Zn-ribbon protein, pos 79.5 12 0.00026 34.4 8.3 16 157-172 97-112 (239)
196 PRK03992 proteasome-activating 79.4 6.4 0.00014 37.3 6.9 49 124-179 4-52 (389)
197 COG1579 Zn-ribbon protein, pos 79.4 9.9 0.00021 34.9 7.8 50 123-172 91-140 (239)
198 PRK03992 proteasome-activating 79.4 6.6 0.00014 37.2 6.9 45 119-163 6-50 (389)
199 PF07200 Mod_r: Modifier of ru 79.2 10 0.00022 31.0 7.2 52 123-174 29-80 (150)
200 PRK02224 chromosome segregatio 79.0 20 0.00044 36.8 10.8 20 126-145 347-366 (880)
201 PF07334 IFP_35_N: Interferon- 78.9 3.1 6.7E-05 32.1 3.8 25 152-176 3-27 (76)
202 KOG4360 Uncharacterized coiled 78.9 11 0.00024 38.4 8.6 47 110-156 211-261 (596)
203 PF10883 DUF2681: Protein of u 78.8 18 0.0004 28.5 8.1 36 115-150 17-52 (87)
204 PF05837 CENP-H: Centromere pr 78.7 17 0.00037 28.8 8.1 57 117-174 13-69 (106)
205 KOG4343 bZIP transcription fac 78.5 2.7 5.9E-05 42.9 4.2 38 137-174 304-341 (655)
206 PF12711 Kinesin-relat_1: Kine 78.5 23 0.00049 27.9 8.5 10 93-102 3-12 (86)
207 PF06103 DUF948: Bacterial pro 78.4 26 0.00057 26.3 9.3 44 120-163 18-61 (90)
208 PF15397 DUF4618: Domain of un 78.3 9.7 0.00021 35.3 7.5 83 89-173 141-224 (258)
209 PRK00409 recombination and DNA 78.2 9.8 0.00021 39.8 8.3 6 210-215 668-673 (782)
210 PF02403 Seryl_tRNA_N: Seryl-t 78.1 18 0.00038 28.0 7.9 57 119-175 41-100 (108)
211 KOG2264 Exostosin EXT1L [Signa 78.1 11 0.00024 39.2 8.5 23 126-148 112-134 (907)
212 PF05103 DivIVA: DivIVA protei 77.8 1.8 4E-05 34.0 2.4 46 118-163 22-67 (131)
213 PF10018 Med4: Vitamin-D-recep 77.6 43 0.00094 28.8 10.9 40 122-161 23-62 (188)
214 PF03954 Lectin_N: Hepatic lec 77.4 6.1 0.00013 33.7 5.5 59 116-174 46-112 (138)
215 PRK04325 hypothetical protein; 77.4 12 0.00026 28.2 6.5 49 121-169 9-57 (74)
216 PF10883 DUF2681: Protein of u 77.3 13 0.00027 29.4 6.8 40 114-153 9-48 (87)
217 PRK05771 V-type ATP synthase s 77.2 7.3 0.00016 39.3 6.9 30 139-168 97-126 (646)
218 PF15070 GOLGA2L5: Putative go 77.1 12 0.00027 38.3 8.5 55 121-175 15-69 (617)
219 TIGR02492 flgK_ends flagellar 76.9 24 0.00053 32.6 9.8 77 89-167 107-184 (322)
220 KOG3898 Transcription factor N 76.9 1.7 3.7E-05 39.6 2.2 48 79-127 75-124 (254)
221 PRK04406 hypothetical protein; 76.9 16 0.00034 27.8 7.0 50 119-168 9-58 (75)
222 PF10146 zf-C4H2: Zinc finger- 76.8 23 0.00051 32.1 9.3 62 114-175 32-100 (230)
223 TIGR02168 SMC_prok_B chromosom 76.7 26 0.00056 36.2 10.7 47 121-167 440-486 (1179)
224 KOG0982 Centrosomal protein Nu 76.7 13 0.00028 37.2 8.2 39 136-174 298-336 (502)
225 PF11544 Spc42p: Spindle pole 76.6 15 0.00032 28.5 6.8 48 126-173 3-50 (76)
226 PRK02119 hypothetical protein; 76.6 19 0.00041 27.1 7.4 54 116-169 4-57 (73)
227 KOG4005 Transcription factor X 76.6 12 0.00026 35.0 7.5 74 87-174 84-157 (292)
228 PRK03918 chromosome segregatio 76.5 21 0.00046 36.5 10.0 13 90-102 173-185 (880)
229 TIGR02169 SMC_prok_A chromosom 76.4 42 0.0009 35.0 12.2 8 48-55 641-648 (1164)
230 PF12709 Kinetocho_Slk19: Cent 76.3 26 0.00056 27.8 8.3 39 129-167 35-74 (87)
231 KOG3650 Predicted coiled-coil 76.2 7.5 0.00016 32.0 5.4 64 118-181 46-110 (120)
232 TIGR00414 serS seryl-tRNA synt 76.1 16 0.00035 35.3 8.7 51 124-174 40-94 (418)
233 KOG0804 Cytoplasmic Zn-finger 76.1 29 0.00063 34.9 10.5 54 121-174 382-446 (493)
234 PF07352 Phage_Mu_Gam: Bacteri 76.0 21 0.00046 29.6 8.3 54 116-175 5-58 (149)
235 PF12777 MT: Microtubule-bindi 76.0 15 0.00032 34.4 8.2 42 116-157 230-271 (344)
236 PRK10803 tol-pal system protei 75.9 11 0.00023 34.3 7.0 29 125-153 58-86 (263)
237 PF13094 CENP-Q: CENP-Q, a CEN 75.9 37 0.0008 28.2 9.7 65 110-174 16-80 (160)
238 PRK04778 septation ring format 75.8 15 0.00032 36.8 8.5 64 114-177 376-439 (569)
239 PF05565 Sipho_Gp157: Siphovir 75.7 48 0.001 28.0 11.0 81 90-174 5-86 (162)
240 PF12808 Mto2_bdg: Micro-tubul 75.6 8.3 0.00018 27.8 4.9 44 126-169 6-49 (52)
241 PF07716 bZIP_2: Basic region 75.4 8.7 0.00019 26.7 5.0 28 122-149 26-53 (54)
242 PF13815 Dzip-like_N: Iguana/D 75.3 28 0.00061 27.8 8.6 91 82-175 19-113 (118)
243 KOG4451 Uncharacterized conser 75.3 20 0.00042 33.5 8.5 24 135-158 99-122 (286)
244 PF04012 PspA_IM30: PspA/IM30 74.9 25 0.00054 30.4 8.8 58 112-169 82-139 (221)
245 COG2919 Septum formation initi 74.7 16 0.00034 29.5 7.0 68 82-157 18-86 (117)
246 PLN02678 seryl-tRNA synthetase 74.7 26 0.00056 34.7 9.8 29 146-174 75-103 (448)
247 PF07888 CALCOCO1: Calcium bin 74.4 21 0.00045 36.5 9.2 31 145-175 202-232 (546)
248 PF10473 CENP-F_leu_zip: Leuci 74.1 33 0.00072 29.1 9.0 45 124-168 55-99 (140)
249 KOG2391 Vacuolar sorting prote 74.0 12 0.00026 36.3 7.1 9 80-88 213-221 (365)
250 COG1340 Uncharacterized archae 73.9 23 0.0005 33.6 8.8 37 138-174 51-87 (294)
251 PF03961 DUF342: Protein of un 73.8 22 0.00047 34.4 8.9 33 143-175 376-408 (451)
252 PF00769 ERM: Ezrin/radixin/mo 73.8 17 0.00036 32.9 7.7 57 118-174 58-114 (246)
253 KOG0995 Centromere-associated 73.7 13 0.00029 38.1 7.6 9 11-19 137-145 (581)
254 PF05529 Bap31: B-cell recepto 73.6 22 0.00049 30.2 8.1 31 140-170 159-189 (192)
255 PF09744 Jnk-SapK_ap_N: JNK_SA 73.4 36 0.00079 29.2 9.3 45 123-167 91-135 (158)
256 COG2919 Septum formation initi 73.4 21 0.00045 28.8 7.4 37 135-171 50-86 (117)
257 KOG1962 B-cell receptor-associ 73.2 12 0.00026 33.9 6.6 54 113-166 154-210 (216)
258 PF04325 DUF465: Protein of un 73.1 22 0.00048 24.4 6.5 38 125-162 10-47 (49)
259 PRK07739 flgK flagellar hook-a 73.1 33 0.00071 34.0 10.1 77 89-167 119-196 (507)
260 PF03961 DUF342: Protein of un 73.0 21 0.00046 34.4 8.6 57 120-176 333-402 (451)
261 TIGR01834 PHA_synth_III_E poly 72.9 14 0.00031 35.3 7.2 60 112-171 254-318 (320)
262 PF02388 FemAB: FemAB family; 72.8 21 0.00046 34.1 8.5 77 94-174 219-298 (406)
263 PF12777 MT: Microtubule-bindi 72.7 24 0.00052 33.0 8.7 56 119-174 226-281 (344)
264 KOG3977 Troponin I [Cytoskelet 72.7 25 0.00054 32.0 8.3 70 83-156 61-137 (221)
265 PF10226 DUF2216: Uncharacteri 72.7 21 0.00045 32.1 7.8 43 114-156 41-83 (195)
266 PRK15396 murein lipoprotein; P 72.6 23 0.0005 27.4 7.1 44 123-173 27-70 (78)
267 PF11068 YlqD: YlqD protein; 72.4 54 0.0012 27.4 9.8 68 109-176 15-87 (131)
268 KOG0804 Cytoplasmic Zn-finger 72.1 21 0.00045 36.0 8.4 39 125-163 372-410 (493)
269 PRK05431 seryl-tRNA synthetase 72.1 22 0.00048 34.5 8.5 56 120-175 27-92 (425)
270 TIGR01069 mutS2 MutS2 family p 72.1 22 0.00048 37.2 9.0 13 162-174 578-590 (771)
271 PRK10803 tol-pal system protei 72.1 20 0.00044 32.5 7.8 39 116-154 56-94 (263)
272 PRK15396 murein lipoprotein; P 72.0 20 0.00043 27.7 6.6 60 96-163 11-71 (78)
273 PF13747 DUF4164: Domain of un 71.9 20 0.00043 27.9 6.7 31 124-154 35-65 (89)
274 PF01920 Prefoldin_2: Prefoldi 71.7 11 0.00023 28.4 5.1 67 90-157 30-98 (106)
275 PF03962 Mnd1: Mnd1 family; I 71.7 25 0.00053 30.7 8.0 18 125-142 73-90 (188)
276 PF03233 Cauli_AT: Aphid trans 71.7 31 0.00067 30.2 8.5 48 91-142 85-132 (163)
277 PLN02320 seryl-tRNA synthetase 71.5 33 0.00072 34.6 9.8 51 124-174 103-162 (502)
278 PF14257 DUF4349: Domain of un 71.4 32 0.0007 30.6 8.9 66 109-174 127-194 (262)
279 PRK00295 hypothetical protein; 71.4 31 0.00066 25.6 7.3 49 121-169 5-53 (68)
280 PF14257 DUF4349: Domain of un 71.2 15 0.00032 32.7 6.7 64 116-179 127-192 (262)
281 KOG4395 Transcription factor A 70.8 6.8 0.00015 36.7 4.5 47 80-127 178-226 (285)
282 TIGR03185 DNA_S_dndD DNA sulfu 70.8 60 0.0013 32.9 11.6 38 117-154 424-461 (650)
283 PRK10869 recombination and rep 70.8 38 0.00082 34.0 10.0 85 87-178 297-389 (553)
284 COG1730 GIM5 Predicted prefold 70.7 18 0.00038 30.9 6.6 46 116-164 92-137 (145)
285 KOG0977 Nuclear envelope prote 70.7 28 0.0006 35.6 9.1 25 124-148 165-189 (546)
286 PRK14011 prefoldin subunit alp 70.6 23 0.0005 30.0 7.3 52 116-173 86-137 (144)
287 PRK04863 mukB cell division pr 70.5 23 0.0005 39.9 9.2 89 85-174 948-1038(1486)
288 PRK11415 hypothetical protein; 70.3 17 0.00036 27.4 5.8 46 129-174 18-64 (74)
289 PRK05683 flgK flagellar hook-a 70.3 28 0.00061 36.1 9.3 76 90-167 108-184 (676)
290 TIGR00019 prfA peptide chain r 69.9 73 0.0016 30.9 11.4 88 88-176 9-102 (360)
291 PRK00846 hypothetical protein; 69.8 33 0.00071 26.5 7.4 50 120-169 12-61 (77)
292 PF14645 Chibby: Chibby family 69.8 16 0.00034 29.9 6.0 45 128-172 71-115 (116)
293 PRK07191 flgK flagellar hook-a 69.8 38 0.00082 33.0 9.6 77 89-167 107-184 (456)
294 PF12329 TMF_DNA_bd: TATA elem 69.6 45 0.00098 25.0 8.7 48 126-173 24-71 (74)
295 PRK07521 flgK flagellar hook-a 69.5 35 0.00077 33.5 9.4 77 89-167 102-179 (483)
296 PRK00736 hypothetical protein; 69.5 32 0.00068 25.5 7.0 50 121-170 5-54 (68)
297 KOG2751 Beclin-like protein [S 69.4 16 0.00035 36.4 7.0 46 126-171 181-226 (447)
298 COG1792 MreC Cell shape-determ 69.3 14 0.00031 34.1 6.3 21 154-174 88-108 (284)
299 PF05531 NPV_P10: Nucleopolyhe 69.1 46 0.00099 25.7 8.0 67 114-184 4-72 (75)
300 PRK02793 phi X174 lysis protei 69.1 35 0.00075 25.6 7.2 50 120-169 7-56 (72)
301 PRK06665 flgK flagellar hook-a 69.1 39 0.00086 34.5 9.9 76 90-167 120-196 (627)
302 PF04999 FtsL: Cell division p 69.0 26 0.00056 26.7 6.7 18 151-168 51-68 (97)
303 PF09726 Macoilin: Transmembra 68.8 64 0.0014 33.8 11.4 40 117-156 540-580 (697)
304 PF04012 PspA_IM30: PspA/IM30 68.7 47 0.001 28.6 9.1 58 117-174 94-151 (221)
305 KOG0243 Kinesin-like protein [ 68.6 16 0.00034 40.0 7.2 28 108-135 398-425 (1041)
306 PF14193 DUF4315: Domain of un 68.6 23 0.0005 27.6 6.3 32 123-154 3-34 (83)
307 PF01763 Herpes_UL6: Herpesvir 68.5 14 0.00031 37.7 6.6 43 114-156 363-405 (557)
308 PF10234 Cluap1: Clusterin-ass 68.5 44 0.00095 31.2 9.3 59 117-175 172-237 (267)
309 PLN02678 seryl-tRNA synthetase 68.4 32 0.00068 34.1 8.8 54 124-177 43-99 (448)
310 PF12709 Kinetocho_Slk19: Cent 68.4 20 0.00044 28.4 6.1 50 110-161 33-82 (87)
311 KOG0946 ER-Golgi vesicle-tethe 68.4 59 0.0013 35.2 11.0 72 109-180 638-716 (970)
312 PF15619 Lebercilin: Ciliary p 68.2 65 0.0014 28.4 9.9 28 147-174 162-189 (194)
313 TIGR00634 recN DNA repair prot 68.2 15 0.00034 36.4 6.7 48 113-161 147-194 (563)
314 TIGR01242 26Sp45 26S proteasom 68.1 10 0.00023 35.1 5.2 21 159-179 23-43 (364)
315 PF08826 DMPK_coil: DMPK coile 68.0 27 0.00058 25.8 6.3 21 153-173 36-56 (61)
316 PF05600 DUF773: Protein of un 67.7 35 0.00076 34.2 9.0 52 123-174 441-492 (507)
317 PF04859 DUF641: Plant protein 67.6 19 0.0004 30.3 6.1 45 125-169 84-128 (131)
318 PF07412 Geminin: Geminin; In 67.5 13 0.00029 33.4 5.5 32 135-166 125-156 (200)
319 PF10779 XhlA: Haemolysin XhlA 67.1 37 0.00081 24.9 7.0 44 125-175 3-46 (71)
320 TIGR02977 phageshock_pspA phag 67.0 50 0.0011 29.0 9.0 52 122-173 100-151 (219)
321 PF09738 DUF2051: Double stran 66.9 28 0.00061 32.8 7.8 70 100-174 96-172 (302)
322 COG1196 Smc Chromosome segrega 66.7 41 0.00089 36.5 9.9 7 94-100 759-765 (1163)
323 PF02996 Prefoldin: Prefoldin 66.7 24 0.00052 27.3 6.3 37 116-155 75-111 (120)
324 KOG0982 Centrosomal protein Nu 66.7 27 0.00059 35.1 7.9 50 125-174 301-350 (502)
325 KOG2751 Beclin-like protein [S 66.6 21 0.00045 35.6 7.1 19 157-175 247-265 (447)
326 COG1196 Smc Chromosome segrega 66.5 67 0.0014 35.0 11.5 10 157-166 899-908 (1163)
327 PF13863 DUF4200: Domain of un 66.5 50 0.0011 25.9 8.1 29 146-174 78-106 (126)
328 PF15458 NTR2: Nineteen comple 66.4 52 0.0011 29.9 9.2 50 114-173 204-253 (254)
329 KOG1029 Endocytic adaptor prot 66.2 28 0.0006 37.6 8.2 46 132-177 476-521 (1118)
330 PF12999 PRKCSH-like: Glucosid 66.2 28 0.0006 30.7 7.1 6 32-37 75-80 (176)
331 PF13870 DUF4201: Domain of un 66.1 42 0.0009 28.3 8.1 61 113-173 76-136 (177)
332 TIGR01242 26Sp45 26S proteasom 66.1 16 0.00035 33.9 6.0 33 126-158 4-36 (364)
333 PF07926 TPR_MLP1_2: TPR/MLP1/ 65.9 36 0.00078 27.7 7.4 20 116-135 61-80 (132)
334 PF05164 ZapA: Cell division p 65.9 46 0.001 24.3 7.4 37 88-128 27-63 (89)
335 PF09730 BicD: Microtubule-ass 65.7 28 0.00061 36.6 8.2 89 87-175 28-126 (717)
336 TIGR03185 DNA_S_dndD DNA sulfu 65.7 29 0.00062 35.1 8.1 13 90-102 402-414 (650)
337 cd00632 Prefoldin_beta Prefold 65.7 27 0.00059 27.2 6.4 47 109-155 51-97 (105)
338 PRK08147 flgK flagellar hook-a 65.6 55 0.0012 32.5 9.9 77 89-167 108-185 (547)
339 PF14523 Syntaxin_2: Syntaxin- 65.5 42 0.00091 25.2 7.3 20 155-174 63-82 (102)
340 PF05103 DivIVA: DivIVA protei 65.1 7.5 0.00016 30.6 3.2 43 130-172 27-69 (131)
341 KOG0249 LAR-interacting protei 65.0 31 0.00067 36.8 8.3 40 136-175 217-256 (916)
342 PF05010 TACC: Transforming ac 65.0 71 0.0015 28.6 9.6 82 91-175 95-180 (207)
343 PF05701 WEMBL: Weak chloropla 64.8 39 0.00085 33.6 8.8 52 123-174 297-355 (522)
344 COG4694 Uncharacterized protei 64.8 39 0.00084 35.3 8.8 47 79-129 356-403 (758)
345 KOG1853 LIS1-interacting prote 64.7 53 0.0012 31.2 9.0 61 114-174 52-116 (333)
346 PF04999 FtsL: Cell division p 64.6 40 0.00086 25.6 7.0 33 130-162 37-69 (97)
347 PRK08471 flgK flagellar hook-a 64.6 54 0.0012 33.5 9.8 76 89-166 112-188 (613)
348 PRK10947 global DNA-binding tr 64.5 48 0.001 27.9 8.0 49 118-168 6-54 (135)
349 PF06320 GCN5L1: GCN5-like pro 64.5 78 0.0017 25.9 9.2 48 127-174 39-86 (121)
350 KOG4196 bZIP transcription fac 64.3 54 0.0012 28.0 8.2 35 140-174 79-113 (135)
351 KOG0018 Structural maintenance 64.1 35 0.00076 37.6 8.7 91 83-175 656-751 (1141)
352 PF06120 Phage_HK97_TLTM: Tail 64.0 42 0.00092 31.8 8.4 15 119-133 50-64 (301)
353 PRK03947 prefoldin subunit alp 63.7 29 0.00063 28.1 6.4 36 121-156 6-41 (140)
354 KOG0971 Microtubule-associated 63.1 30 0.00066 37.8 7.9 49 123-171 370-432 (1243)
355 PRK01156 chromosome segregatio 63.0 91 0.002 32.5 11.3 44 115-158 675-718 (895)
356 COG5481 Uncharacterized conser 63.0 48 0.001 25.0 6.8 47 126-172 9-61 (67)
357 TIGR00414 serS seryl-tRNA synt 62.9 47 0.001 32.2 8.7 56 120-175 43-102 (418)
358 PRK00578 prfB peptide chain re 62.9 75 0.0016 30.8 10.0 13 210-222 194-206 (367)
359 PF04420 CHD5: CHD5-like prote 62.6 16 0.00035 30.9 4.9 17 201-217 137-157 (161)
360 KOG1029 Endocytic adaptor prot 62.5 64 0.0014 35.0 10.0 50 113-162 530-583 (1118)
361 TIGR00020 prfB peptide chain r 62.4 91 0.002 30.3 10.5 81 89-169 26-112 (364)
362 PF04899 MbeD_MobD: MbeD/MobD 62.4 66 0.0014 24.3 7.9 56 124-179 6-65 (70)
363 cd00632 Prefoldin_beta Prefold 62.4 35 0.00076 26.5 6.5 47 122-168 57-103 (105)
364 PF01166 TSC22: TSC-22/dip/bun 62.3 17 0.00036 27.0 4.3 29 141-169 13-41 (59)
365 PF07407 Seadorna_VP6: Seadorn 62.1 19 0.00041 35.2 5.7 30 119-148 30-59 (420)
366 PF14988 DUF4515: Domain of un 62.0 45 0.00098 29.6 7.8 51 119-169 154-204 (206)
367 PF03980 Nnf1: Nnf1 ; InterPr 62.0 19 0.0004 28.1 4.9 24 123-146 82-105 (109)
368 PF13600 DUF4140: N-terminal d 61.9 16 0.00034 28.0 4.4 22 145-166 80-101 (104)
369 PF04065 Not3: Not1 N-terminal 61.9 32 0.0007 31.4 7.0 54 123-176 131-190 (233)
370 PF05816 TelA: Toxic anion res 61.7 80 0.0017 29.6 9.8 70 103-175 62-135 (333)
371 PRK10328 DNA binding protein, 61.7 57 0.0012 27.4 7.9 38 118-157 6-43 (134)
372 PF13747 DUF4164: Domain of un 61.7 68 0.0015 24.9 7.9 15 122-136 9-23 (89)
373 KOG4643 Uncharacterized coiled 61.6 45 0.00098 36.8 8.9 60 114-173 495-554 (1195)
374 TIGR01005 eps_transp_fam exopo 61.6 93 0.002 31.8 10.9 87 85-176 250-372 (754)
375 PRK03947 prefoldin subunit alp 61.4 35 0.00076 27.6 6.5 46 116-164 92-137 (140)
376 KOG0971 Microtubule-associated 61.1 46 0.00099 36.5 8.8 15 88-102 419-433 (1243)
377 cd07596 BAR_SNX The Bin/Amphip 61.1 56 0.0012 27.0 7.8 15 119-133 122-136 (218)
378 PF10205 KLRAQ: Predicted coil 61.1 89 0.0019 25.4 8.7 46 130-175 28-73 (102)
379 KOG0964 Structural maintenance 60.9 45 0.00098 36.7 8.7 51 121-171 411-468 (1200)
380 PRK09973 putative outer membra 60.8 46 0.00099 26.3 6.7 39 122-160 25-63 (85)
381 PF12711 Kinesin-relat_1: Kine 60.8 23 0.0005 27.9 5.1 14 157-170 52-65 (86)
382 KOG4360 Uncharacterized coiled 60.8 85 0.0018 32.4 10.2 83 89-175 208-301 (596)
383 TIGR02680 conserved hypothetic 60.8 49 0.0011 36.8 9.4 21 113-133 222-242 (1353)
384 COG2900 SlyX Uncharacterized p 60.7 75 0.0016 24.5 8.9 52 124-175 4-55 (72)
385 COG5493 Uncharacterized conser 60.7 80 0.0017 28.9 9.1 63 121-183 46-115 (231)
386 PF06705 SF-assemblin: SF-asse 60.6 63 0.0014 28.7 8.5 17 83-102 52-68 (247)
387 PF07407 Seadorna_VP6: Seadorn 60.6 16 0.00035 35.6 5.0 29 137-165 34-62 (420)
388 PF09726 Macoilin: Transmembra 60.5 21 0.00044 37.3 6.1 18 129-146 461-478 (697)
389 PF08286 Spc24: Spc24 subunit 60.4 3.1 6.6E-05 33.4 0.2 43 132-174 3-45 (118)
390 PF13600 DUF4140: N-terminal d 60.4 19 0.0004 27.7 4.5 21 123-143 72-92 (104)
391 PF15458 NTR2: Nineteen comple 60.2 35 0.00075 31.1 6.9 34 138-171 211-244 (254)
392 PRK06945 flgK flagellar hook-a 60.2 62 0.0013 33.4 9.4 77 90-168 109-186 (651)
393 PF00261 Tropomyosin: Tropomyo 60.2 84 0.0018 27.9 9.2 15 160-174 201-215 (237)
394 KOG0979 Structural maintenance 59.9 32 0.0007 37.6 7.5 80 82-175 625-704 (1072)
395 PRK10698 phage shock protein P 59.9 74 0.0016 28.3 8.8 55 120-174 98-152 (222)
396 PF10168 Nup88: Nuclear pore c 59.9 62 0.0013 33.9 9.4 13 112-124 537-549 (717)
397 PF10779 XhlA: Haemolysin XhlA 59.8 42 0.0009 24.7 6.1 20 123-142 8-27 (71)
398 KOG3433 Protein involved in me 59.7 48 0.001 29.9 7.5 44 126-169 100-143 (203)
399 PF08657 DASH_Spc34: DASH comp 59.6 62 0.0013 29.9 8.5 41 139-179 177-217 (259)
400 TIGR03545 conserved hypothetic 59.6 39 0.00085 34.3 7.8 26 154-179 235-260 (555)
401 TIGR02338 gimC_beta prefoldin, 59.4 48 0.001 26.1 6.8 62 94-156 39-102 (110)
402 PRK04654 sec-independent trans 59.3 72 0.0016 29.1 8.6 17 120-136 33-49 (214)
403 COG4467 Regulator of replicati 59.2 41 0.00088 27.9 6.4 48 110-157 1-51 (114)
404 KOG4674 Uncharacterized conser 59.2 36 0.00079 39.3 8.1 50 124-173 1246-1295(1822)
405 PRK00591 prfA peptide chain re 59.2 1.8E+02 0.0039 28.3 12.0 84 89-174 9-100 (359)
406 PF07989 Microtub_assoc: Micro 59.1 46 0.00099 25.2 6.3 25 146-170 47-71 (75)
407 TIGR00634 recN DNA repair prot 59.1 89 0.0019 31.1 10.1 85 86-177 301-393 (563)
408 PLN02320 seryl-tRNA synthetase 59.0 54 0.0012 33.1 8.6 56 120-175 92-156 (502)
409 PF00261 Tropomyosin: Tropomyo 58.9 1E+02 0.0022 27.4 9.5 50 123-172 178-227 (237)
410 KOG4687 Uncharacterized coiled 58.8 92 0.002 30.1 9.6 80 91-174 14-115 (389)
411 PF09969 DUF2203: Uncharacteri 58.8 74 0.0016 26.0 8.0 25 152-176 46-70 (120)
412 KOG4643 Uncharacterized coiled 58.7 51 0.0011 36.4 8.7 64 111-174 391-454 (1195)
413 PF10267 Tmemb_cc2: Predicted 58.7 41 0.00088 33.0 7.5 84 82-173 205-293 (395)
414 KOG0964 Structural maintenance 58.7 36 0.00078 37.4 7.6 17 86-102 184-200 (1200)
415 PRK14127 cell division protein 58.6 22 0.00048 29.0 4.8 34 116-149 32-65 (109)
416 PF10046 BLOC1_2: Biogenesis o 58.6 76 0.0016 24.8 7.7 55 121-175 42-99 (99)
417 KOG4348 Adaptor protein CMS/SE 58.5 34 0.00074 34.7 7.0 51 122-172 570-624 (627)
418 PRK06799 flgK flagellar hook-a 58.5 92 0.002 30.3 9.9 75 89-165 112-187 (431)
419 PRK01156 chromosome segregatio 58.4 62 0.0014 33.7 9.2 21 149-169 218-238 (895)
420 PRK00409 recombination and DNA 58.4 55 0.0012 34.4 8.8 11 164-174 585-595 (782)
421 TIGR02338 gimC_beta prefoldin, 58.4 39 0.00085 26.6 6.2 34 142-175 74-107 (110)
422 TIGR02977 phageshock_pspA phag 58.3 84 0.0018 27.6 8.8 60 115-174 86-145 (219)
423 PF10498 IFT57: Intra-flagella 58.3 83 0.0018 30.3 9.4 31 144-174 289-319 (359)
424 PF06785 UPF0242: Uncharacteri 58.3 66 0.0014 31.5 8.7 59 116-174 87-159 (401)
425 COG5185 HEC1 Protein involved 57.9 42 0.00092 34.3 7.6 60 114-176 482-546 (622)
426 PHA02557 22 prohead core prote 57.9 99 0.0021 29.2 9.5 59 118-176 138-203 (271)
427 PF08657 DASH_Spc34: DASH comp 57.8 62 0.0013 29.9 8.2 29 125-153 177-205 (259)
428 KOG3156 Uncharacterized membra 57.8 49 0.0011 30.3 7.3 27 148-174 115-141 (220)
429 PF14584 DUF4446: Protein of u 57.5 60 0.0013 27.6 7.5 59 122-180 24-84 (151)
430 PF14389 Lzipper-MIP1: Leucine 57.5 45 0.00097 25.8 6.2 25 151-175 56-80 (88)
431 PF02994 Transposase_22: L1 tr 57.4 31 0.00068 33.0 6.4 52 124-175 140-191 (370)
432 COG3879 Uncharacterized protei 57.4 40 0.00086 31.3 6.8 31 125-155 54-84 (247)
433 PF10211 Ax_dynein_light: Axon 57.3 1.3E+02 0.0028 26.2 11.1 63 88-156 90-155 (189)
434 PRK14160 heat shock protein Gr 57.3 45 0.00097 30.1 7.0 22 125-146 58-79 (211)
435 PF10506 MCC-bdg_PDZ: PDZ doma 57.2 69 0.0015 24.1 6.9 31 124-154 1-31 (67)
436 PRK12714 flgK flagellar hook-a 57.1 79 0.0017 32.4 9.5 76 89-166 107-183 (624)
437 PF02996 Prefoldin: Prefoldin 57.0 46 0.00099 25.7 6.3 43 126-168 75-117 (120)
438 PF11180 DUF2968: Protein of u 57.0 1E+02 0.0023 27.6 9.1 76 86-175 105-180 (192)
439 PF15254 CCDC14: Coiled-coil d 56.9 1.5E+02 0.0032 32.0 11.5 24 151-174 489-512 (861)
440 PF13514 AAA_27: AAA domain 56.8 68 0.0015 34.6 9.4 66 109-174 145-213 (1111)
441 PF04849 HAP1_N: HAP1 N-termin 56.6 56 0.0012 31.2 7.8 38 136-173 228-265 (306)
442 cd07627 BAR_Vps5p The Bin/Amph 56.6 69 0.0015 28.0 7.9 23 113-135 114-136 (216)
443 COG1422 Predicted membrane pro 56.4 90 0.0019 28.2 8.7 40 114-153 55-97 (201)
444 PF13118 DUF3972: Protein of u 56.1 64 0.0014 27.2 7.3 55 113-174 70-124 (126)
445 COG4372 Uncharacterized protei 56.1 67 0.0014 32.2 8.4 53 120-172 73-125 (499)
446 KOG0995 Centromere-associated 56.1 47 0.001 34.3 7.6 15 120-134 279-293 (581)
447 PRK04863 mukB cell division pr 56.0 63 0.0014 36.7 9.2 16 87-102 308-323 (1486)
448 PF04871 Uso1_p115_C: Uso1 / p 55.9 1.1E+02 0.0023 25.5 8.6 17 161-177 96-112 (136)
449 PF10359 Fmp27_WPPW: RNA pol I 55.9 38 0.00082 33.3 6.9 54 122-175 171-226 (475)
450 TIGR00293 prefoldin, archaeal 55.5 34 0.00073 27.1 5.4 33 124-156 2-34 (126)
451 KOG4571 Activating transcripti 55.4 38 0.00082 32.2 6.4 66 82-155 224-289 (294)
452 KOG0972 Huntingtin interacting 55.3 53 0.0011 31.8 7.4 23 162-184 341-363 (384)
453 PF09755 DUF2046: Uncharacteri 55.3 57 0.0012 31.2 7.6 51 123-173 50-101 (310)
454 PF09755 DUF2046: Uncharacteri 55.0 2E+02 0.0044 27.6 12.1 49 117-165 225-277 (310)
455 PRK08871 flgK flagellar hook-a 55.0 80 0.0017 32.5 9.2 75 90-166 111-186 (626)
456 KOG2077 JNK/SAPK-associated pr 55.0 42 0.00091 35.2 7.1 34 140-173 327-360 (832)
457 COG5570 Uncharacterized small 55.0 27 0.00058 25.7 4.2 43 122-164 6-55 (57)
458 cd00890 Prefoldin Prefoldin is 54.9 47 0.001 25.8 6.1 32 125-156 91-122 (129)
459 KOG4343 bZIP transcription fac 54.7 22 0.00049 36.6 5.1 42 121-162 302-343 (655)
460 PF01496 V_ATPase_I: V-type AT 54.7 4.1 8.9E-05 41.8 0.0 83 84-171 29-117 (759)
461 PF08961 DUF1875: Domain of un 54.5 4.1 8.9E-05 37.4 0.0 32 114-145 122-153 (243)
462 PF09730 BicD: Microtubule-ass 54.5 79 0.0017 33.4 9.2 54 121-174 34-87 (717)
463 PRK14161 heat shock protein Gr 54.5 56 0.0012 28.5 7.0 45 111-155 9-53 (178)
464 KOG0243 Kinesin-like protein [ 54.5 72 0.0016 35.1 9.1 55 116-170 443-497 (1041)
465 PF06698 DUF1192: Protein of u 54.4 21 0.00046 26.3 3.7 22 153-174 25-46 (59)
466 PF07047 OPA3: Optic atrophy 3 54.4 85 0.0018 25.9 7.7 10 79-88 42-51 (134)
467 PRK09343 prefoldin subunit bet 54.2 1.2E+02 0.0025 24.6 9.0 60 116-175 9-90 (121)
468 PF07061 Swi5: Swi5; InterPro 54.2 58 0.0013 25.2 6.3 13 150-162 47-59 (83)
469 TIGR01063 gyrA DNA gyrase, A s 54.0 51 0.0011 34.8 7.8 43 130-172 429-471 (800)
470 KOG1854 Mitochondrial inner me 53.8 1.6E+02 0.0034 31.0 11.0 40 94-134 291-338 (657)
471 KOG3540 Beta amyloid precursor 53.8 1.5E+02 0.0033 30.5 10.6 56 82-137 257-312 (615)
472 PF12938 M_domain: M domain of 53.7 35 0.00076 31.4 5.8 57 118-174 147-203 (235)
473 PF10481 CENP-F_N: Cenp-F N-te 53.7 64 0.0014 30.8 7.6 24 114-137 11-34 (307)
474 KOG4438 Centromere-associated 53.6 70 0.0015 32.0 8.2 26 110-135 268-293 (446)
475 PF09787 Golgin_A5: Golgin sub 53.5 50 0.0011 32.7 7.3 26 146-171 278-303 (511)
476 PF06160 EzrA: Septation ring 53.5 77 0.0017 31.8 8.7 66 112-177 370-435 (560)
477 PRK14153 heat shock protein Gr 53.5 41 0.00088 29.9 6.0 7 227-233 174-180 (194)
478 KOG3863 bZIP transcription fac 53.3 66 0.0014 33.4 8.2 51 130-180 513-563 (604)
479 PF09738 DUF2051: Double stran 53.3 68 0.0015 30.3 7.8 49 126-174 110-158 (302)
480 PF08700 Vps51: Vps51/Vps67; 53.2 87 0.0019 22.9 8.0 24 116-139 21-44 (87)
481 KOG0837 Transcriptional activa 53.1 24 0.00051 33.3 4.7 62 113-174 198-266 (279)
482 PF08738 Gon7: Gon7 family; I 52.8 42 0.0009 27.2 5.5 34 121-154 54-88 (103)
483 PF01920 Prefoldin_2: Prefoldi 52.7 38 0.00083 25.4 5.1 36 139-174 66-101 (106)
484 PF05700 BCAS2: Breast carcino 52.7 1.4E+02 0.0031 26.3 9.4 32 144-175 177-208 (221)
485 PF04859 DUF641: Plant protein 52.7 58 0.0013 27.4 6.5 41 122-162 88-128 (131)
486 PRK14872 rod shape-determining 52.6 49 0.0011 31.8 6.8 65 85-162 30-94 (337)
487 KOG2077 JNK/SAPK-associated pr 52.5 40 0.00087 35.3 6.5 42 125-166 326-367 (832)
488 PF13166 AAA_13: AAA domain 52.5 92 0.002 31.3 9.1 81 89-173 373-455 (712)
489 KOG0709 CREB/ATF family transc 52.4 18 0.00039 36.3 4.0 45 121-172 272-316 (472)
490 COG3352 FlaC Putative archaeal 52.4 1.2E+02 0.0026 26.5 8.5 60 115-174 73-133 (157)
491 KOG4673 Transcription factor T 52.2 61 0.0013 34.7 7.8 53 123-175 868-923 (961)
492 KOG0996 Structural maintenance 52.0 54 0.0012 36.6 7.7 85 85-172 404-488 (1293)
493 PRK09343 prefoldin subunit bet 52.0 76 0.0016 25.7 7.0 55 95-154 57-111 (121)
494 COG1422 Predicted membrane pro 51.9 44 0.00095 30.2 6.0 41 121-161 72-117 (201)
495 PF05667 DUF812: Protein of un 51.8 95 0.002 32.0 9.1 64 116-179 330-393 (594)
496 PF10458 Val_tRNA-synt_C: Valy 51.8 89 0.0019 22.5 7.3 51 125-175 1-65 (66)
497 COG3096 MukB Uncharacterized p 51.7 84 0.0018 34.3 8.8 80 85-168 577-663 (1480)
498 COG4238 Murein lipoprotein [Ce 51.7 94 0.002 24.3 7.0 51 123-173 27-77 (78)
499 KOG0161 Myosin class II heavy 51.6 74 0.0016 37.2 9.0 60 116-175 1479-1538(1930)
500 PRK06800 fliH flagellar assemb 51.6 65 0.0014 29.3 7.0 49 125-173 35-83 (228)
No 1
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.35 E-value=5.7e-12 Score=120.39 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=63.9
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGR---PPKTDKAAILIDAVRMVTQLRSEAQKLK---DSNSSLQEKIKELKAEK 151 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~---~~K~DKAsIL~dAI~ylkqLr~qv~~Lk---~~n~~L~eeik~Lk~Ek 151 (236)
-.|++.|||||++||+|+.+|+.|| |.+ ..|..|.+||..+++||+.|++.-++.. ..-..|+..++.|...+
T Consensus 235 d~HNeVERRRR~nIN~~IkeLg~li-P~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~ri 313 (411)
T KOG1318|consen 235 DNHNEVERRRRENINDRIKELGQLI-PKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRI 313 (411)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhC-CCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHH
Confidence 5799999999999999999999999 876 2378899999999999999999766433 33445666666666666
Q ss_pred HHHHHHHH
Q 026599 152 NELRDEKQ 159 (236)
Q Consensus 152 nELrdEk~ 159 (236)
.||..+..
T Consensus 314 eeLk~~~~ 321 (411)
T KOG1318|consen 314 EELKSEAG 321 (411)
T ss_pred HHHHHHHH
Confidence 66655444
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.34 E-value=2.1e-12 Score=89.70 Aligned_cols=52 Identities=40% Similarity=0.547 Sum_probs=47.6
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGR--PPKTDKAAILIDAVRMVTQLRSEA 130 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~--~~K~DKAsIL~dAI~ylkqLr~qv 130 (236)
..|+.+||.||++||+.|.+|+.+| |.. ..|+||++||..||+||+.|+.++
T Consensus 6 ~~~~~~Er~RR~~~n~~~~~L~~ll-p~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 6 EAHNLRERRRRERINDAFDELRSLL-PTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999999999 654 379999999999999999999875
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.33 E-value=3e-12 Score=87.60 Aligned_cols=50 Identities=40% Similarity=0.548 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHhHHHHhhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHH
Q 026599 81 ACREKLRRDRLNDKFVELASILEPGR--PPKTDKAAILIDAVRMVTQLRSEAQ 131 (236)
Q Consensus 81 a~rER~RRdkLNerF~eL~slL~P~~--~~K~DKAsIL~dAI~ylkqLr~qv~ 131 (236)
+.+||+||++||+.|..|+++| |.. ..|+||++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~li-p~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLL-PTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999 531 3699999999999999999998875
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.31 E-value=2.9e-12 Score=89.14 Aligned_cols=49 Identities=41% Similarity=0.551 Sum_probs=44.2
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhcCCC---CCCCCchhhhHHHHHHHHHHHH
Q 026599 79 SKACREKLRRDRLNDKFVELASILEPG---RPPKTDKAAILIDAVRMVTQLR 127 (236)
Q Consensus 79 ~ka~rER~RRdkLNerF~eL~slL~P~---~~~K~DKAsIL~dAI~ylkqLr 127 (236)
.|+.+||+||++||+.|.+|+.+|++. ...|++|++||..||+||++||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 589999999999999999999999443 2469999999999999999986
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.84 E-value=7.8e-09 Score=91.18 Aligned_cols=76 Identities=25% Similarity=0.384 Sum_probs=69.0
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhcCCCCCC------CCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026599 79 SKACREKLRRDRLNDKFVELASILEPGRPP------KTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKN 152 (236)
Q Consensus 79 ~ka~rER~RRdkLNerF~eL~slL~P~~~~------K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn 152 (236)
.|...|++|||-||..+..|..|| |.|++ |+.||.||..+|+||.+|..+..+-+++...|+.+...|+.-++
T Consensus 65 aHtqaEqkRRdAIk~GYddLq~Lv-P~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~ 143 (229)
T KOG1319|consen 65 AHTQAEQKRRDAIKRGYDDLQTLV-PTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKV 143 (229)
T ss_pred HHHHHHHHHHHHHHhchHHHHHhc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999 86532 88999999999999999999999999999999999888888887
Q ss_pred HHH
Q 026599 153 ELR 155 (236)
Q Consensus 153 ELr 155 (236)
+..
T Consensus 144 ~YE 146 (229)
T KOG1319|consen 144 NYE 146 (229)
T ss_pred HHH
Confidence 754
No 6
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.35 E-value=2.5e-06 Score=76.73 Aligned_cols=78 Identities=24% Similarity=0.294 Sum_probs=57.9
Q ss_pred CCCCcchhHHHHHHHHHHHhHHHHhhhcCCCCCCCCc--hhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026599 75 GSSSSKACREKLRRDRLNDKFVELASILEPGRPPKTD--KAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKN 152 (236)
Q Consensus 75 ~~~~~ka~rER~RRdkLNerF~eL~slL~P~~~~K~D--KAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn 152 (236)
+...+|+.-||+||++|.+.|..|+..| |..+..++ -++||..|++||+.|+.+........+.|..+-..|+.+.+
T Consensus 58 ~~R~~HN~LEk~RRahlk~~~~~Lk~~v-P~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ 136 (232)
T KOG2483|consen 58 SSRAHHNALEKRRRAHLKDCFESLKDSV-PLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLE 136 (232)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhC-CCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999 54334443 58999999999999888777666655555444444444444
Q ss_pred H
Q 026599 153 E 153 (236)
Q Consensus 153 E 153 (236)
+
T Consensus 137 q 137 (232)
T KOG2483|consen 137 Q 137 (232)
T ss_pred H
Confidence 3
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.35 E-value=2.4e-07 Score=83.75 Aligned_cols=55 Identities=35% Similarity=0.393 Sum_probs=47.4
Q ss_pred CCcchhHHHHHHHHHHHhHHHHhhhcCCCC-------CCCCchhhhHHHHHHHHHHHHHHHHH
Q 026599 77 SSSKACREKLRRDRLNDKFVELASILEPGR-------PPKTDKAAILIDAVRMVTQLRSEAQK 132 (236)
Q Consensus 77 ~~~ka~rER~RRdkLNerF~eL~slL~P~~-------~~K~DKAsIL~dAI~ylkqLr~qv~~ 132 (236)
+..|-.-||+||+|||+-+.+|+.|| +.. .+|++||-||.-|++||++|+...+.
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li-~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLI-PEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHH-HHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 34577899999999999999999999 742 26999999999999999999986443
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.32 E-value=7.6e-07 Score=91.45 Aligned_cols=51 Identities=29% Similarity=0.440 Sum_probs=47.1
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCCC---CCCchhhhHHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGRP---PKTDKAAILIDAVRMVTQLRSE 129 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~~---~K~DKAsIL~dAI~ylkqLr~q 129 (236)
..|+..||||||++|.-+.||++|| |.+. -|+||-+||..||..|+.+++.
T Consensus 22 e~~~~~EKrRRdq~N~yI~ELs~Mv-p~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 22 ENRSEIEKRRRDQMNKYIEELSEMV-PTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhh-hcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 4688999999999999999999999 9864 5999999999999999999985
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.02 E-value=5.7e-06 Score=86.01 Aligned_cols=77 Identities=32% Similarity=0.452 Sum_probs=68.8
Q ss_pred ccccccCCCCCCCCCcchhHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 026599 64 SSKKRVRSESCGSSSSKACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQE 142 (236)
Q Consensus 64 ~~rKR~R~~s~~~~~~ka~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~e 142 (236)
.+.+|...+ ......|+.-|||=|--|||++.+|+.+| |+.+.|+.|.+.|..||+|+++|+...+.|+.++..++.
T Consensus 265 ~Pi~rl~~G-~~kRtAHN~IEKRYRsSINDKI~eLk~lV-~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~t 341 (953)
T KOG2588|consen 265 KPIKRLLPG-GEKRTAHNIIEKRYRSSINDKIIELKDLV-PGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLRT 341 (953)
T ss_pred CchhhcCCC-CcccchhhHHHHHhhcchhHHHHHHHHhc-CccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhhh
Confidence 477776655 45677899999999999999999999999 877789999999999999999999999999999988874
No 10
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.97 E-value=7.8e-06 Score=76.70 Aligned_cols=63 Identities=29% Similarity=0.407 Sum_probs=53.8
Q ss_pred chhHHHHHHHHHHHhHHHHhhhcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 026599 80 KACREKLRRDRLNDKFVELASILEPGRP-PKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 80 ka~rER~RRdkLNerF~eL~slL~P~~~-~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~ee 143 (236)
-++-||||=.-||..|..|++|| |-.. -|+.||+||..+.+||.+|..+.-+|-.+|.+|..-
T Consensus 64 ANsNERRRMQSINAGFqsLr~Ll-Pr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr~ 127 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALL-PRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGELKRL 127 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhc-CcccchhhHHHHHHHHHHHHHHHHHhcccccccccchHHHH
Confidence 34679999999999999999999 8542 399999999999999999999988888777765443
No 11
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=97.67 E-value=0.00039 Score=53.76 Aligned_cols=60 Identities=27% Similarity=0.506 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+..||+-|.=|+-++++||+.|..|.+++..++..+.+|++||..||.|-..++..|.++
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999884
No 12
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.0012 Score=50.63 Aligned_cols=60 Identities=27% Similarity=0.514 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+..||+-|.-|+-++++|++.|.+|..+..++......|+.||..||.|-..++..|+++
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999984
No 13
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.28 E-value=0.0006 Score=62.76 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 026599 80 KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKD 135 (236)
Q Consensus 80 ka~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~ 135 (236)
-..|||||=.|+||-|..|+.---++-.+.+-|+-||-.||+||..|+.=.+++.+
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~ 177 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ 177 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34689999999999999997543233224899999999999999988775554443
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=97.15 E-value=0.0043 Score=46.86 Aligned_cols=55 Identities=29% Similarity=0.500 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKN-------ELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn-------ELrdEk~~Lk~ekekLe~qlk~ 174 (236)
++.+.+|..+|+.+-+.+..|+.++.+|+.+.+ +|++||..|+.+...++..|++
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665555555555555555544 4444444555554444444444
No 15
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=97.14 E-value=0.0011 Score=65.81 Aligned_cols=56 Identities=30% Similarity=0.404 Sum_probs=42.8
Q ss_pred CCcchhHHHHHH-----------HHHHHhHHHHhhhcCCC--CCCCCchhhhHHHHHHHHHHHHHHHHH
Q 026599 77 SSSKACREKLRR-----------DRLNDKFVELASILEPG--RPPKTDKAAILIDAVRMVTQLRSEAQK 132 (236)
Q Consensus 77 ~~~ka~rER~RR-----------dkLNerF~eL~slL~P~--~~~K~DKAsIL~dAI~ylkqLr~qv~~ 132 (236)
+..|++|||.|| ..||+-|.||+.|.--- .....-|-.||..|+.+|..|++||.+
T Consensus 516 peqkaeREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 516 PEQKAEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred hhhhhhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 556677666655 56999999999997221 123567899999999999999998864
No 16
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.10 E-value=0.0014 Score=51.79 Aligned_cols=58 Identities=26% Similarity=0.458 Sum_probs=47.3
Q ss_pred HHHHHHHHHhHHHHhhhcCCCC-----CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 026599 85 KLRRDRLNDKFVELASILEPGR-----PPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 85 R~RRdkLNerF~eL~slL~P~~-----~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~ee 143 (236)
|.--|.|||....|+.+| |.. ..|..-+-+|.+|+.||+.|+.+|..|.+...+|.+.
T Consensus 16 risddqi~dLvsKLq~ll-Pe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 16 RISEDQINDLIIKLQQLL-PELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred CCCHHHHHHHHHHHHHHC-hHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334588999999999999 752 1355566799999999999999999999988877653
No 17
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.91 E-value=0.00096 Score=58.73 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=48.7
Q ss_pred CCcchhHHHHHHHHHHHhHHHHhhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 026599 77 SSSKACREKLRRDRLNDKFVELASILEPGR--PPKTDKAAILIDAVRMVTQLRSEAQKLKD 135 (236)
Q Consensus 77 ~~~ka~rER~RRdkLNerF~eL~slL~P~~--~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~ 135 (236)
....+.|||.|=..+|..|.+||..|++.- +.|..|+.+|--||+||+.|..-.+.-+.
T Consensus 110 ~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 110 RQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 355677899999999999999999994432 45999999999999999998876555443
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.68 E-value=0.015 Score=43.97 Aligned_cols=58 Identities=28% Similarity=0.464 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+..||+-|.-|+.++++|+++|..|.++...|+.+-..|++|-...+..+..|=..|+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3578999999999999999999999999999999999999888877766665544443
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.59 E-value=0.014 Score=50.44 Aligned_cols=60 Identities=23% Similarity=0.458 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 116 LIDAVRMVTQLRSE---AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 116 L~dAI~ylkqLr~q---v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
|.+.|.||..|+.. .+.++.+|..|+.++..|+.+..+|..|+..|+.+..-++..+++|
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999974 7788899999999999999998899999999999999999888874
No 20
>smart00338 BRLZ basic region leucin zipper.
Probab=95.45 E-value=0.047 Score=39.23 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEK 158 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk 158 (236)
-.|+.+|+.+++.|+.+|..|..++..|..|...|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 348888888888888888888887777777777666544
No 21
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=95.39 E-value=0.064 Score=44.97 Aligned_cols=55 Identities=33% Similarity=0.561 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEK--NELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~Ek--nELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
|.+|++++..|+.++..|..+++.|.... .||+++...|+.+++.++..|+.+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999998887 48999999999999999999998754
No 22
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=95.36 E-value=0.12 Score=40.16 Aligned_cols=52 Identities=29% Similarity=0.460 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
.+++.+|.++|+..-+.+.-|+.||.+||...+.|.+|...++...+.|+++
T Consensus 3 ~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~e 54 (79)
T PRK15422 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4688999999999999999999999999998889988877754444444443
No 23
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=95.33 E-value=0.14 Score=52.47 Aligned_cols=95 Identities=28% Similarity=0.369 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-CCC-CCCCC---CCCC
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM-S-TQP-SFLTP---PPAI 188 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~-~-~~p-~~~p~---~~~~ 188 (236)
|+...-.-|.+|+.+-|+|..+++++..+|.+||.+.-.-+.|...||.+++.-|.+++.+ . .+| -|+|- |-.+
T Consensus 87 I~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~ 166 (907)
T KOG2264|consen 87 ILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQI 166 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccC
Confidence 4444556688999999999999999999999999999988999999999999999999984 2 233 35554 3445
Q ss_pred chhhhccccCCCCccccccCC
Q 026599 189 PAAFAAQGQAPGNKLMPFISY 209 (236)
Q Consensus 189 p~a~~~~~qa~~~k~~p~~~~ 209 (236)
|+.-.+..|+.+..|--...|
T Consensus 167 pr~l~pp~~~~~c~lhncfdy 187 (907)
T KOG2264|consen 167 PRELEPPSQISPCQLHNCFDY 187 (907)
T ss_pred cccCCCccccCcccchhcccc
Confidence 555555667777666444444
No 24
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=95.31 E-value=0.063 Score=38.55 Aligned_cols=35 Identities=23% Similarity=0.519 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
.|+.+|+.++..|+.+|..|..++..|+.+...|.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555444444444443
No 25
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.20 E-value=0.11 Score=41.91 Aligned_cols=53 Identities=28% Similarity=0.482 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
+|-.++..|++....|.+++.+||....+|-+||+.|+-|.+.|...|.....
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455566666666666677777777777777777777777777777766543
No 26
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.18 E-value=0.27 Score=45.57 Aligned_cols=96 Identities=25% Similarity=0.354 Sum_probs=71.0
Q ss_pred cccccCCCCCCCCCcchhHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 026599 65 SKKRVRSESCGSSSSKACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKI 144 (236)
Q Consensus 65 ~rKR~R~~s~~~~~~ka~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eei 144 (236)
.|||.|.. +-+.-||.-|.||..|..+=- ..-.|-+-..+-=..|++|.++.+.|..+|+.|++..
T Consensus 55 ~rKr~RL~------HLS~EEK~~RrKLKNRVAAQt--------aRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 55 KRKRRRLD------HLSWEEKVQRRKLKNRVAAQT--------ARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAIN 120 (292)
T ss_pred HHHHHhhc------ccCHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66766653 344568888888887765421 1223334444445568899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 145 KELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 145 k~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+.|-.+-+||+.+...|+.+...+.++-..
T Consensus 121 ~~L~~~n~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 121 ESLLAKNHELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999888888888776554
No 27
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.66 E-value=0.25 Score=40.64 Aligned_cols=51 Identities=37% Similarity=0.614 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
-.+..|..|..++..++.+...|++++..|..+++++++|...|-.+.+.+
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777777777777777777666554444443
No 28
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=94.55 E-value=0.22 Score=49.45 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKA 149 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~ 149 (236)
|..-|--+++||.+++.|..+|+.|.+|.+.|++
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888888888888887777666544
No 29
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.44 E-value=0.22 Score=40.56 Aligned_cols=51 Identities=22% Similarity=0.394 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+|-.++..|++....+..++..||....+|-+||..|+.|.+.|...|..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666667777777777777777777777777777777765
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.19 E-value=0.27 Score=43.59 Aligned_cols=85 Identities=11% Similarity=0.141 Sum_probs=50.6
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
.+...++|. .++...+.+|++-| -+ |-.+.-....+|+++++.+++....|.++.+.|+.+..+++.|
T Consensus 87 ~~p~~~~rl--p~le~el~~l~~~l-~~---------~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 87 TTPSLRTRV--PDLENQVKTLTDKL-NN---------IDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred CCccHHHHH--HHHHHHHHHHHHHH-HH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445544 67888999998887 22 2233335555666666666655555666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026599 158 KQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 158 k~~Lk~ekekLe~qlk~ 174 (236)
+..|+++.+.++..+..
T Consensus 155 ~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 155 VDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666655443
No 31
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.15 E-value=0.32 Score=44.89 Aligned_cols=58 Identities=26% Similarity=0.476 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
|--+...+|+++.+++.++++.|..+..+|..+.++++++..+|..|+.+|+..++.+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455666667777778888888888888888888888888888888888777763
No 32
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.92 E-value=0.41 Score=44.40 Aligned_cols=64 Identities=19% Similarity=0.353 Sum_probs=41.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 111 DKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 111 DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.+-+.|.++-.-++.++.+++.|....+.++.++++++.+.+++..|...|+.+|+.++..|..
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666777777777777777777777777666666666666666666666555443
No 33
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.88 E-value=1 Score=39.96 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 149 AEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 149 ~EknELrdEk~~Lk~ekekLe~ql 172 (236)
...++|+.||+.|+.|...++.++
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444433333333
No 34
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=93.85 E-value=0.048 Score=55.23 Aligned_cols=45 Identities=38% Similarity=0.459 Sum_probs=38.0
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhcCC---CCCCCCchhhhHHHHHHHHH
Q 026599 79 SKACREKLRRDRLNDKFVELASILEP---GRPPKTDKAAILIDAVRMVT 124 (236)
Q Consensus 79 ~ka~rER~RRdkLNerF~eL~slL~P---~~~~K~DKAsIL~dAI~ylk 124 (236)
.|+---||-|||||--+.-|.+|| | ++..|+||-|||-=++.||+
T Consensus 28 tkSNPSKRHRdRLNaELD~lAsLL-PfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 28 TKSNPSKRHRDRLNAELDHLASLL-PFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred ccCCcchhHHHHhhhHHHHHHHhc-CCCHHHHhhhhhhhhhhhhHHHHH
Confidence 444456888999999999999999 6 33369999999999999986
No 35
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.84 E-value=0.86 Score=42.31 Aligned_cols=15 Identities=13% Similarity=0.468 Sum_probs=6.2
Q ss_pred HHHHHHhHHHHhhhc
Q 026599 88 RDRLNDKFVELASIL 102 (236)
Q Consensus 88 RdkLNerF~eL~slL 102 (236)
...|...+..|+++.
T Consensus 186 ~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 186 KAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 36
>PRK11637 AmiB activator; Provisional
Probab=93.70 E-value=0.88 Score=43.39 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.-+.++...|..|..+++.+......++.+++.+..+.++++.+...++.+++.++.+|+.
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777777777777777777777777777777766666655
No 37
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.62 E-value=1 Score=33.75 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
.-|.+|-...++|+.+|..|.++...+..|...|.+.+..-++.+|.+=..|++|-.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 345667777778888888888888888888888888888778888888778877643
No 38
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=93.62 E-value=0.1 Score=45.18 Aligned_cols=46 Identities=33% Similarity=0.523 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
|.+++.+..+-=+.|.-|++|+ .||..|+.+.|+||.|...|.++|
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556566666777777776 566777777777777777777777
No 39
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.60 E-value=0.6 Score=39.42 Aligned_cols=71 Identities=25% Similarity=0.435 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQPSFLTPPP 186 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p~~~p~~~ 186 (236)
.+.++..|..+++....+..++..+..++.........+|++...++.+.+++..+...+...-|.+..|.
T Consensus 72 ~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ 142 (177)
T PF13870_consen 72 IGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPA 142 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH
Confidence 46788888999999999999999999999999999999999999999999999999999887777766655
No 40
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.48 E-value=0.36 Score=44.77 Aligned_cols=58 Identities=22% Similarity=0.440 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
.=.-+++|+.+.+.++.+.+.|+..+.++..+.+++++|+..+++++++|+.+|+.+.
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777777777777777777777777777777777777653
No 41
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=93.27 E-value=0.78 Score=34.56 Aligned_cols=58 Identities=29% Similarity=0.477 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+-=..|.+|+.+-++|....-.+...|+.|+....++..+...|+..+++++..+..+
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788999999999988888888888888888888888888888888888877664
No 42
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=93.22 E-value=0.98 Score=35.00 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
.+|..++..|+.....|-..+..++.|...|+.||..|..=|..|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666655555
No 43
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=93.14 E-value=0.63 Score=37.93 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
.+-|.+|..++..|-.+...|...+.+|-.|-.+|+-||..|+....++++
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667777777787788888888888887877888888888888877644
No 44
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.02 E-value=0.33 Score=33.70 Aligned_cols=38 Identities=29% Similarity=0.532 Sum_probs=17.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 135 DSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 135 ~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
...+.|......|+.+...|..||..|++|+..|...+
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333433444444444444445555555555544433
No 45
>PRK04406 hypothetical protein; Provisional
Probab=93.01 E-value=1.4 Score=33.47 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
.|..++..|+....-.+.-|.+|....-+...+...|+.+...|..+|+.+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4666666677666666666677776677777777778888888888888764
No 46
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=92.94 E-value=2.2 Score=42.65 Aligned_cols=57 Identities=12% Similarity=0.342 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
.-|.+-+.+..+|+++.+.|+.|...+.....++..+...|++|+..|+.|++++..
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444455555555555555555555566666666666777777777777776544
No 47
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.90 E-value=0.73 Score=35.56 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
.+++.+|..+++.--+.+.-|+-||.+||.+.|.|..|-+.+....+.|+.+
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 4678889999988888888888889888888888877777666666665543
No 48
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.90 E-value=0.85 Score=39.26 Aligned_cols=82 Identities=26% Similarity=0.380 Sum_probs=36.1
Q ss_pred HHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 86 LRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 86 ~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
++|..+..++..+..-+ . +. -..+..--.-|.+|+.++..|+..+..|.+++++...-...|+||...|..+.
T Consensus 88 r~~~el~~~L~~~~~~l----~-~l--~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 88 RSKGELAQQLVELNDEL----Q-EL--EKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccc----c-hh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555 1 11 12333444456666666777776666666666666666666666666666666
Q ss_pred HHHHHHHHH
Q 026599 166 EKIEQQLKA 174 (236)
Q Consensus 166 ekLe~qlk~ 174 (236)
.-++.+++.
T Consensus 161 ~~~e~k~~~ 169 (194)
T PF08614_consen 161 NMLEEKLRK 169 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 49
>PRK02119 hypothetical protein; Provisional
Probab=92.81 E-value=1.6 Score=32.91 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
..|..++.+|+....-.+.-|.+|....-+.+.+...|+.+...|.++|+.+.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44566666666666666666666766667777777788888888888888764
No 50
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=92.80 E-value=0.69 Score=37.32 Aligned_cols=57 Identities=28% Similarity=0.429 Sum_probs=45.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 110 TDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 110 ~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
|||-.| .+.|.+|.+++..|-++...|...+.+|..|-.+|+-||..|+..+.++++
T Consensus 1 Mdk~~l----~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 1 MDKKEL----FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred CchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455444 346777888888888888888888888888888888999999888888776
No 51
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.73 E-value=0.83 Score=44.03 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=59.0
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 87 RRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 87 RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
++..+..++.+|+..+ -. +-+-|.+.++-.+.|+.++++|+..+..+.++++.|..+.++++.+...+..++.
T Consensus 331 ~~~~~~~~i~el~~~i-~~------~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 331 EFNEQSKKLLELKNKI-ST------NKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777 11 1122777888899999999999999888888899988888888888888877776
Q ss_pred HHHH
Q 026599 167 KIEQ 170 (236)
Q Consensus 167 kLe~ 170 (236)
..+.
T Consensus 404 ~~~~ 407 (562)
T PHA02562 404 HRGI 407 (562)
T ss_pred HHHH
Confidence 6544
No 52
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.62 E-value=1.5 Score=41.24 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=6.6
Q ss_pred HHHHHHhHHHHhhhc
Q 026599 88 RDRLNDKFVELASIL 102 (236)
Q Consensus 88 RdkLNerF~eL~slL 102 (236)
.+.|+..+..|+.+.
T Consensus 181 ~~~L~~e~~~L~~~~ 195 (312)
T smart00787 181 KDALEEELRQLKQLE 195 (312)
T ss_pred HHHHHHHHHHHHHhH
Confidence 334444444444444
No 53
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=92.58 E-value=1.1 Score=33.56 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
|+.|..++..|=.....|..|...|+.+...++.|...|....+--..+|++|-
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888889888888998888888899988888888888888863
No 54
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=92.58 E-value=0.082 Score=54.63 Aligned_cols=41 Identities=32% Similarity=0.472 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCC---CCCCCchhhhHHHHHHHHH
Q 026599 83 REKLRRDRLNDKFVELASILEPG---RPPKTDKAAILIDAVRMVT 124 (236)
Q Consensus 83 rER~RRdkLNerF~eL~slL~P~---~~~K~DKAsIL~dAI~ylk 124 (236)
+-|-||.|=|+-|.+|..+| |- +..-+|||||+-=||.||+
T Consensus 53 AARsRRsKEn~~FyeLa~~l-Plp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLL-PLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhcccchHHHHHHHHhC-CCcchhhhhhhhHHHHHHHHHHHH
Confidence 46789999999999999999 62 3358999999999999997
No 55
>PRK04325 hypothetical protein; Provisional
Probab=92.54 E-value=1.6 Score=32.93 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
..+..++.+|+....-.+.-|.+|....-+.+.+...|+.++..|-.+|+.+.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566666666655656666666666666677777777777777887764
No 56
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.29 E-value=0.55 Score=43.78 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026599 156 DEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 156 dEk~~Lk~ekekLe~qlk~ 174 (236)
+|...|+.+++....+|..
T Consensus 113 ~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 113 EERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554
No 57
>PRK00846 hypothetical protein; Provisional
Probab=92.00 E-value=2 Score=33.13 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
.|..++..|+....-.+.-|.+|....-+...+...|+.++..|-.+|+.+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666555556666666667777777888888888888888864
No 58
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.98 E-value=0.87 Score=33.64 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
|..++.+|+....-++.-|.+|....-+...+...|+.++..|..+|+.+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666666666667777777778888888888765
No 59
>PRK00295 hypothetical protein; Provisional
Probab=91.88 E-value=2.1 Score=31.81 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 127 RSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 127 r~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
.+++.+|+....-.+.-|.+|....-+...+...|+.++..|..+|+.+.
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555545555555555555666666677777777777777764
No 60
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.86 E-value=1.3 Score=33.21 Aligned_cols=52 Identities=27% Similarity=0.467 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKN-------ELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn-------ELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+..||.+...+...++..+.+++.|..|.+ ...+++..|+.|++.|..+|+.
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666654 3455778888888888888764
No 61
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=91.71 E-value=0.7 Score=42.83 Aligned_cols=60 Identities=18% Similarity=0.429 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCCC
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM-STQPSFLT 183 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~-~~~p~~~p 183 (236)
+.|+..++.+.++.+.++..+..|..+...|.....+.++|.++.+..|+++ ++.|.||-
T Consensus 165 ~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmd 225 (267)
T PF10234_consen 165 KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMD 225 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 3444555566666666666677777777777777778889999999999997 56787774
No 62
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=91.61 E-value=1.1 Score=44.57 Aligned_cols=60 Identities=7% Similarity=0.113 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+-|.+.=.-..+|++++++|+.+.+.+.....++....++|.+|+..|+.+.+-+-.+..
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 445566667788888888888888777777777888888999999999999865555543
No 63
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=0.91 Score=43.78 Aligned_cols=44 Identities=36% Similarity=0.459 Sum_probs=26.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 026599 135 DSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQ 178 (236)
Q Consensus 135 ~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~ 178 (236)
++.+.++.+...|+.-..||+.-++.|+.++++||+|+..++.+
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~n 268 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKN 268 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444455555556666666666777777777776665443
No 64
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=91.47 E-value=1.6 Score=31.29 Aligned_cols=36 Identities=33% Similarity=0.539 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 137 NSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 137 n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
...|+.++..|..+...|+.++..|+.++..|..++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555555555555555555555555555543
No 65
>PRK11637 AmiB activator; Provisional
Probab=91.34 E-value=1.3 Score=42.17 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 149 AEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 149 ~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
.+.+++..+...|+.++..++.+|.
T Consensus 96 ~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 96 NTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 66
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=91.26 E-value=2.3 Score=37.00 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=9.5
Q ss_pred HHHHHHHhHHHHhhhc
Q 026599 87 RRDRLNDKFVELASIL 102 (236)
Q Consensus 87 RRdkLNerF~eL~slL 102 (236)
|++=.|.-|.+|--=|
T Consensus 60 r~~ly~~~F~ELIRQV 75 (189)
T PF10211_consen 60 REELYSQCFDELIRQV 75 (189)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666665544
No 67
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=91.13 E-value=1.2 Score=40.70 Aligned_cols=55 Identities=18% Similarity=0.435 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
|-=+..|=.++++.|.+|++|...+..++..|+.|...|+++..+|-..++-+.+
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344567778888888888888888889999999999999999999999998754
No 68
>PRK02793 phi X174 lysis protein; Provisional
Probab=91.12 E-value=2.9 Score=31.37 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
+..++.+|+....-.+.-|.+|.....+.+.+...|+.+...|..+|+.+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455566666666555556666666666667777777788888888888764
No 69
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.89 E-value=0.83 Score=31.69 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 140 LQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 140 L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
|+..-..|+...+.|+.++..|+.|+++|..++..+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666654
No 70
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.73 E-value=1.6 Score=38.89 Aligned_cols=53 Identities=26% Similarity=0.423 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
.|.++-.+|-..+..++.+...|..+...|++||..|..+.+.++.+.+.++.
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 33444444444444555556667777777777777777777777777666543
No 71
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.72 E-value=2.9 Score=34.40 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 026599 112 KAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEK 158 (236)
Q Consensus 112 KAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk 158 (236)
-.+++..=-.-|++|..++..|+.++..|+.+-+.+..|.-.|..++
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566677777777777777766666566655555554444
No 72
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=90.71 E-value=1.9 Score=42.21 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=55.4
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHH---------------HHHHHHhhhhHHHHHHHHHHHH
Q 026599 87 RRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSE---------------AQKLKDSNSSLQEKIKELKAEK 151 (236)
Q Consensus 87 RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~q---------------v~~Lk~~n~~L~eeik~Lk~Ek 151 (236)
+...|.+++.+|..-+ ..-.++.+.+..-+.+|..+... +.++.+-...+.+++.++..+.
T Consensus 72 ~~~~l~~~l~~l~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 72 RLAELRKQIRELEAEL----RDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666 12345667777777777777642 3445555555666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 152 NELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 152 nELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
.++..+...|+.++.+|+.+|..++
T Consensus 148 ~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 148 REAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777777777777777777776654
No 73
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=90.69 E-value=0.16 Score=44.23 Aligned_cols=49 Identities=33% Similarity=0.422 Sum_probs=41.3
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCCC-CCCchhhhHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGRP-PKTDKAAILIDAVRMVTQLR 127 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~~-~K~DKAsIL~dAI~ylkqLr 127 (236)
.-|+.+||+|=.-||+-|..|+.++ |..+ .|..|.--|.-|.+||--|-
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~ii-ptlPsdklSkiqtLklA~ryidfl~ 129 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKII-PTLPSDKLSKIQTLKLAARYIDFLY 129 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhc-CCCCccccccccchhhcccCCchhh
Confidence 3478899999999999999999999 7652 38888888999999887653
No 74
>PHA03011 hypothetical protein; Provisional
Probab=90.44 E-value=2.1 Score=35.17 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
=...-++.+.+|+.|-.+|-++..-+..+++.+..-..+-.||..-|++|++||..++--
T Consensus 58 D~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 58 DINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 345667888999999999999999999999999888888888999999999999988753
No 75
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.26 E-value=4 Score=44.87 Aligned_cols=83 Identities=23% Similarity=0.408 Sum_probs=48.4
Q ss_pred HHHhHHHHhhhcCCCCCCCCchh-hhHHHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHH
Q 026599 91 LNDKFVELASILEPGRPPKTDKA-AILIDAVRMVTQLRSEAQKLKDS----------NSSLQEKIKELKAEKNELRDEKQ 159 (236)
Q Consensus 91 LNerF~eL~slL~P~~~~K~DKA-sIL~dAI~ylkqLr~qv~~Lk~~----------n~~L~eeik~Lk~EknELrdEk~ 159 (236)
+++++.+|+..+ |.......|. +=+.+.+..+..|..++.+++.. ...+++.|.+++.|.+++.++..
T Consensus 804 ~ee~~~~lr~~~-~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~ 882 (1293)
T KOG0996|consen 804 LEERVRKLRERI-PELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAA 882 (1293)
T ss_pred HHHHHHHHHHhh-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566777777777 5431111221 12344555666666666666653 12345557777777777775444
Q ss_pred HHHHHHHHHHHHHHHh
Q 026599 160 RLKAEKEKIEQQLKAM 175 (236)
Q Consensus 160 ~Lk~ekekLe~qlk~~ 175 (236)
. |++++.|+.+|..+
T Consensus 883 K-k~~i~~lq~~i~~i 897 (1293)
T KOG0996|consen 883 K-KARIKELQNKIDEI 897 (1293)
T ss_pred H-HHHHHHHHHHHHHh
Confidence 4 67777777777654
No 76
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.24 E-value=1.6 Score=40.60 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=3.9
Q ss_pred HhHHHHhhhc
Q 026599 93 DKFVELASIL 102 (236)
Q Consensus 93 erF~eL~slL 102 (236)
.....|..++
T Consensus 170 ~~~~~l~~~~ 179 (325)
T PF08317_consen 170 KQLEQLDELL 179 (325)
T ss_pred HHHHHHHHHH
Confidence 3333334444
No 77
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=90.24 E-value=2 Score=34.54 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
-++.=+|+||-..++. |...+..|+++++.+..+..+|+.+...++.++..|..++
T Consensus 62 rLaQl~ieYLl~~q~~---L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 62 RLAQLSIEYLLHCQEY---LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556678887665543 3444555666666666666666666666666666665554
No 78
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.18 E-value=3.5 Score=39.22 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=34.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026599 109 KTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNE 153 (236)
Q Consensus 109 K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknE 153 (236)
+..=+.+|.++-+..+.|+.++..|++....++.+++.|+.....
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 445567899999999999999999998887777777666654443
No 79
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=90.13 E-value=1.5 Score=36.19 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+|-.++..|++....|..++-.||+..-+|-+||..|+-|.++|...|--
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 44556677888888888888888888889999999999999998887753
No 80
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.94 E-value=3.2 Score=33.79 Aligned_cols=59 Identities=25% Similarity=0.451 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKN----ELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn----ELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+++|.-|..|+.+.+.++.....|..+....+.... ....++..|..++..++..+.-+
T Consensus 55 a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 55 AEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888877777776544333322 23345555555555555555543
No 81
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=89.81 E-value=3.5 Score=37.30 Aligned_cols=59 Identities=25% Similarity=0.325 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
......=++.|++++++.+.+.+.++++...|+....++.+|-.+|..|-.+|+.|+..
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 34444455666667777777777777777777777777888888888888888887764
No 82
>PRK00736 hypothetical protein; Provisional
Probab=89.71 E-value=4.3 Score=30.14 Aligned_cols=47 Identities=11% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
+.+|+....-.+.-|.+|....-+-..+...|+.++..|..+|+.+.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444333344444444444555555666666667767777653
No 83
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.64 E-value=1.3 Score=37.17 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
.|..++.+|++++..|..+++.|+.|.+.|
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444443333333333333333333
No 84
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=89.59 E-value=1.7 Score=34.55 Aligned_cols=47 Identities=28% Similarity=0.387 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSL--QEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L--~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
+..+++.++.+.+.| ..+++.|+.+..+++-+...+.++++-++.++
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444444444444 33444444444444444444444444444443
No 85
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.52 E-value=2.8 Score=36.85 Aligned_cols=60 Identities=20% Similarity=0.417 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
.|..+=+.+|+.|++++..++..-........++..|-..|.+....+..+++.|+.+|+
T Consensus 20 dIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 20 DITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 466677788888888888887655544444555555555555555555555555555444
No 86
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=89.51 E-value=1.8 Score=31.19 Aligned_cols=37 Identities=41% Similarity=0.614 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 137 NSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 137 n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
...|+.++..++.+..+|+.|...|+...+.++..-+
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3333334444444444444444444334444444443
No 87
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=89.47 E-value=2.9 Score=32.35 Aligned_cols=51 Identities=33% Similarity=0.550 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKA---EKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~---EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
++|+.+++.|+.+-..+..+|..++. +..+|..|...++.++..++.+++.
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666555566666655544 3445555555566666655555554
No 88
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=89.39 E-value=2.2 Score=36.35 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRS 128 (236)
Q Consensus 116 L~dAI~ylkqLr~ 128 (236)
+.....+|++|..
T Consensus 117 I~r~~~li~~l~~ 129 (192)
T PF05529_consen 117 IRRVHSLIKELIK 129 (192)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 89
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.34 E-value=9.5 Score=31.30 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhHHHHhhhc
Q 026599 83 REKLRRDRLNDKFVELASIL 102 (236)
Q Consensus 83 rER~RRdkLNerF~eL~slL 102 (236)
++...|+.|++.+..|.+=+
T Consensus 49 r~~~~~e~l~~~~~~l~~d~ 68 (151)
T PF11559_consen 49 RDMEQREDLSDKLRRLRSDI 68 (151)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 57778888998888888766
No 90
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=89.23 E-value=0.31 Score=48.31 Aligned_cols=42 Identities=31% Similarity=0.415 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCC---CCCCCchhhhHHHHHHHHHH
Q 026599 83 REKLRRDRLNDKFVELASILEPG---RPPKTDKAAILIDAVRMVTQ 125 (236)
Q Consensus 83 rER~RRdkLNerF~eL~slL~P~---~~~K~DKAsIL~dAI~ylkq 125 (236)
.-|.||++=|--|.+|.++| |- +....||++|+-=|+.|||-
T Consensus 8 aA~tRRekEN~EF~eLAklL-PLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLL-PLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhc-cchhhhhhccchhhhhhHHHHHHHH
Confidence 46889999999999999999 63 23469999999999999983
No 91
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.04 E-value=5.5 Score=38.43 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=8.1
Q ss_pred HHHHHHHhHHHHhhhc
Q 026599 87 RRDRLNDKFVELASIL 102 (236)
Q Consensus 87 RRdkLNerF~eL~slL 102 (236)
.+..|+..+..|...+
T Consensus 307 ~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 307 KLKELQHSLEKLDTAI 322 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555555555
No 92
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=88.96 E-value=2.4 Score=35.90 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSL 140 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L 140 (236)
....+-.++|+.|+.+|++++..+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~i 59 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAI 59 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccccHHHHHHHHHHHHHHHHHHcC
Confidence 445566677777777777766544
No 93
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.95 E-value=3.3 Score=37.43 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~ee 143 (236)
-.+|.+++.+.+.|.++-..+.++
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~ee 54 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEE 54 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444333333
No 94
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=88.87 E-value=1.6 Score=39.00 Aligned_cols=37 Identities=30% Similarity=0.585 Sum_probs=15.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 133 LKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 133 Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
|.++|+.|++|+.+|+.+..++ ..|+.|.++|...|.
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~lL~ 110 (276)
T PRK13922 74 LREENEELKKELLELESRLQEL----EQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence 3334444444444444333322 134444455554444
No 95
>COG5570 Uncharacterized small protein [Function unknown]
Probab=88.78 E-value=1.6 Score=32.00 Aligned_cols=44 Identities=34% Similarity=0.464 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 026599 128 SEAQKLKDSNSSLQEKIKELKA-------EKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 128 ~qv~~Lk~~n~~L~eeik~Lk~-------EknELrdEk~~Lk~ekekLe~q 171 (236)
..+..|+.....|++||++-.. ...||+..|.+||.|||+|..|
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455566666666666654332 3456777777888888887654
No 96
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=88.38 E-value=1.2 Score=31.12 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 145 KELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 145 k~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
.+|..+..+|..+|..|+.++..|+.
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444455555555544443
No 97
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.38 E-value=4.1 Score=34.30 Aligned_cols=88 Identities=18% Similarity=0.339 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhH----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 026599 83 REKLRRDRLNDKFVELASILEPGRPPKTDKAAIL----IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEK 158 (236)
Q Consensus 83 rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL----~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk 158 (236)
..+.+-..+.+.+.++...+ -. ......-+ ...-+..+.++++++.++.....+.+++.++..+..+.+++.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~-~~---~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~ 160 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERI-QE---LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEV 160 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666 21 11111111 122233445555566666666666666666665555555666
Q ss_pred HHHHHHHHHHHHHHHH
Q 026599 159 QRLKAEKEKIEQQLKA 174 (236)
Q Consensus 159 ~~Lk~ekekLe~qlk~ 174 (236)
..++.+.+++++....
T Consensus 161 ~~~~~~~~~~~~~~~~ 176 (191)
T PF04156_consen 161 QELRSQLERLQENLQQ 176 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666555443
No 98
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=88.34 E-value=2.7 Score=38.36 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=52.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 110 TDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 110 ~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
.+-.+||.-.+.-=-+.|.++.+|++++..+..++..|+.|.+.|+.+|..|=..+--|+.-
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45678888888888889999999999999999999999999999999999998777766543
No 99
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=88.21 E-value=3.2 Score=30.30 Aligned_cols=44 Identities=11% Similarity=0.327 Sum_probs=19.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 131 QKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 131 ~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.+|+.+...+...+..++.|..+++++...++..+.+|=.-++.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433333
No 100
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.96 E-value=3.8 Score=35.89 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 026599 162 KAEKEKIEQQLKA 174 (236)
Q Consensus 162 k~ekekLe~qlk~ 174 (236)
+.++..++.++..
T Consensus 125 ~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 125 QNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 101
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=87.91 E-value=3.1 Score=36.22 Aligned_cols=51 Identities=25% Similarity=0.379 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
....+.|+.+.++|+.++..|+.+++.|..|..+|..+...++.+-+-|=.
T Consensus 96 ~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 96 NPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666666666666666555554433
No 102
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.66 E-value=9.1 Score=31.41 Aligned_cols=52 Identities=19% Similarity=0.451 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
.|..|..|-.+.++-....+.|.++++.+..+...|.....+|+.+++.++.
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~er 87 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELER 87 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433333
No 103
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.65 E-value=3.5 Score=39.55 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCC
Q 026599 160 RLKAEKEKIEQQLKAMSTQPSFLTP 184 (236)
Q Consensus 160 ~Lk~ekekLe~qlk~~~~~p~~~p~ 184 (236)
..|.-+.+|.++|+.|.+.-|++-|
T Consensus 332 ~IKqAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHHHHHHHHHHHhhhhhheehh
Confidence 3455556666667767666666554
No 104
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=87.59 E-value=2 Score=34.30 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
..+|+++++.++++|+.|+.+...|+.|...| +...+-+|...+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L-------~~~~dyiEe~AR~ 73 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL-------KGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCcHHHHHHHHHH
Confidence 45666666666666666665555555444444 4434556655555
No 105
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=87.33 E-value=5.6 Score=33.86 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=6.8
Q ss_pred HHHHHhHHHHhhhc
Q 026599 89 DRLNDKFVELASIL 102 (236)
Q Consensus 89 dkLNerF~eL~slL 102 (236)
+-+|+.+..+..-+
T Consensus 30 ~~l~~~~~~~~~~~ 43 (177)
T PF07798_consen 30 EVLNDSLEKVAQDL 43 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555544433
No 106
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=87.31 E-value=2.6 Score=30.32 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
-+.+++.++++|+.+++.++.++..|+.+...|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666666666
No 107
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.29 E-value=4.8 Score=35.78 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026599 156 DEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 156 dEk~~Lk~ekekLe~qlk~ 174 (236)
.....++.++++|+.++..
T Consensus 77 ~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 77 RQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444445555554444
No 108
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.22 E-value=2.3 Score=43.24 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
...-.=+.+|+.++++|+.+.+.+..+++.++.+..++.+|....+.+.++++.+++..
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788899999999999999999999999999999999999999999999998864
No 109
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=87.19 E-value=2.3 Score=40.82 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQPS 180 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p~ 180 (236)
+-+.--.+.|..+.++|+.++..|+.+++ ++.++...++.|+++++.+++.+..+|-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (398)
T PTZ00454 11 SSTTHTERDLYEKLKELEKELEFLDIQEE-------YIKEEQKNLKRELIRAKEEVKRIQSVPL 67 (398)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 33334445555555555544444444444 4444445555666667777777776663
No 110
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=87.02 E-value=5 Score=29.38 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
|.+|-.+|+.|......|..++.. ||.+.+..|.|-.|-.+.|-
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~-------lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNA-------LRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544444 44444455555555444443
No 111
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=87.00 E-value=6.8 Score=37.01 Aligned_cols=73 Identities=27% Similarity=0.458 Sum_probs=48.6
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 87 RRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 87 RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
+|+.||....++++-- .+...-+++|+++++.|...-..+.+++.+++.+.+++....+.|..+..
T Consensus 28 kR~El~~~~~~~~ekR--------------deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~ 93 (294)
T COG1340 28 KRDELRKEASELAEKR--------------DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYR 93 (294)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655544 23445677777778888777777777787777777777776666666665
Q ss_pred HHHHHHH
Q 026599 167 KIEQQLK 173 (236)
Q Consensus 167 kLe~qlk 173 (236)
.+-....
T Consensus 94 ~l~e~~~ 100 (294)
T COG1340 94 ELKEKRN 100 (294)
T ss_pred HHHHHhh
Confidence 5554444
No 112
>smart00338 BRLZ basic region leucin zipper.
Probab=86.98 E-value=2.3 Score=30.43 Aligned_cols=33 Identities=36% Similarity=0.649 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
.|+.++..|..+..+|+.+...|..++..|.++
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 113
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=86.93 E-value=4.2 Score=34.50 Aligned_cols=51 Identities=24% Similarity=0.433 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
.+|.++.+ .+|+.++..|+.+++.|+.|..+++.|...++..-+.|....-
T Consensus 69 R~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 69 RVKRVQQK-HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45555443 4577777788888888887777777777777777777766654
No 114
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=86.89 E-value=4.7 Score=30.62 Aligned_cols=52 Identities=29% Similarity=0.380 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKN--------ELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn--------ELrdEk~~Lk~ekekLe~qlk~ 174 (236)
|++...++.+|+.+|=.|.=+|..|....+ ++..||..||.+++.|..+++.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~ 61 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQE 61 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777655555544443333 2344555566666666655554
No 115
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.81 E-value=6.3 Score=33.39 Aligned_cols=41 Identities=32% Similarity=0.514 Sum_probs=23.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 135 DSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 135 ~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
.++..|.+++..++.+.+.|.-|...|+.+++.|.++++-+
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666666666666665555543
No 116
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=86.76 E-value=2.7 Score=34.93 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=21.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 135 DSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 135 ~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
++.+.|.+.|++|....+.|+.||..||.-..
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34445555677777777788888888887543
No 117
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.74 E-value=5.1 Score=35.20 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
.+.|..++.+-+.++..+.+++.+|+...-+|++
T Consensus 112 ~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 112 RKKLEKKIEEKEAELKELESEIKELEMKILELQR 145 (190)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3334444433333344444444444444444444
No 118
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.72 E-value=3.3 Score=45.00 Aligned_cols=48 Identities=27% Similarity=0.511 Sum_probs=19.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 129 EAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
+|++|+..+.+|.++..+++.+..+-++|+..++.++..|...++-.+
T Consensus 409 evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 409 EVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344444444444444444433
No 119
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=86.50 E-value=5.8 Score=37.92 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
+|+-++.-+.+|+.+++.|..+|+.|+.++..+..+..++-.+
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~ 173 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNA 173 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677777777777777777766665555555444333
No 120
>PRK09039 hypothetical protein; Validated
Probab=86.45 E-value=4.3 Score=38.32 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
++.+++-.-|..|+.|++.|+.+...|+.++..++....+.+.....|+.+++..
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888888887777666666665555555444443
No 121
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=86.36 E-value=4.9 Score=29.44 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
=|.+|..+|.+|..+...|..++...+
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777665444
No 122
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.24 E-value=5.6 Score=43.45 Aligned_cols=85 Identities=8% Similarity=0.204 Sum_probs=55.3
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHH------HHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHH
Q 026599 87 RRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMV------TQLRSEAQKLKDSNS-----SLQEKIKELKAEKNELR 155 (236)
Q Consensus 87 RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~yl------kqLr~qv~~Lk~~n~-----~L~eeik~Lk~EknELr 155 (236)
..+.++..+..|+.-| ......---|.|-+.|+ .+++.++..|..++. .++.+..+|..+.++|.
T Consensus 992 e~~~l~~~i~~l~kel----~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~ 1067 (1311)
T TIGR00606 992 HQEKINEDMRLMRQDI----DTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIK 1067 (1311)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888 23344445567888888 566666666665553 34555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 026599 156 DEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 156 dEk~~Lk~ekekLe~qlk~~ 175 (236)
.++..+..++.+|+.+|..+
T Consensus 1068 ~~~a~l~g~~k~le~qi~~l 1087 (1311)
T TIGR00606 1068 RNHVLALGRQKGYEKEIKHF 1087 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666654
No 123
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.14 E-value=11 Score=31.73 Aligned_cols=61 Identities=20% Similarity=0.399 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.-+.+.-.-+..+....+++.++...|+.++++++.+..+++.+...+..+...+++.++.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777666666666666666666666666666666554
No 124
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.01 E-value=5.3 Score=35.69 Aligned_cols=61 Identities=30% Similarity=0.376 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
++.-|...=+-|.++++.|+.....|+++.+.|-+....+..|++.|-++++.|+.+-..+
T Consensus 54 s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 54 SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455555555566666666666666666666666666666666666666666666655443
No 125
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=85.70 E-value=5.2 Score=31.00 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 128 SEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 128 ~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
++-++|..+...||..+..|.....+.++|+..|+.|.+-|+.=|..+
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888889999999999999999999999999999999999884
No 126
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=85.67 E-value=6.4 Score=29.49 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=23.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 129 EAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
....|..++......+...-.+.++|++|+..|+.|.+.+.
T Consensus 27 ~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 27 ENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444455566666677777777777755443
No 127
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=85.65 E-value=5.4 Score=32.68 Aligned_cols=50 Identities=34% Similarity=0.434 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
=.+|+..++.|+.++..+...+.+|..+++|++.....-|..+..|+.++
T Consensus 39 kd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~ 88 (107)
T PF09304_consen 39 KDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRL 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777777777777777777777655544444444444443
No 128
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=85.61 E-value=3.4 Score=33.97 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 128 SEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 128 ~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
.||-+|+...+.|...+..+|.|--.||.||+.|-+=|+.|
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 34444555555565566666666666777777777666554
No 129
>PRK09039 hypothetical protein; Validated
Probab=85.39 E-value=6 Score=37.37 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.+.+|..|+.+++.|...+..|..+.+.+..+....+.+++.|+..|..
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555555544
No 130
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=85.10 E-value=8 Score=31.57 Aligned_cols=62 Identities=27% Similarity=0.407 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
+.+....+..|..+...|.+.|-.++.++..++.+..++.++...|+.+-..++.+++.+..
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~ 90 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSS 90 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555666667777777777777778888888888888888888888888888887644
No 131
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.07 E-value=15 Score=32.21 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026599 153 ELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 153 ELrdEk~~Lk~ekekLe~qlk~ 174 (236)
++.++....+.....++.++..
T Consensus 123 ~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 123 ELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556665556666555
No 132
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.02 E-value=2.4 Score=40.78 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRL 161 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~L 161 (236)
..++++|+.+++.|+.++..|..+.+.++.|...+++|...|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 21 YEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888899999999999888777766665555554443
No 133
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=84.99 E-value=4.5 Score=36.08 Aligned_cols=55 Identities=29% Similarity=0.439 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKN--ELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn--ELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
|..|+++++.|+++....+.||++|..-.. |++++.+.|+.+.......|+.+.+
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777766666667766655433 6777888888888888888877543
No 134
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.88 E-value=4.4 Score=39.37 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCCCCC
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST--QPSFLTPP 185 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~--~p~~~p~~ 185 (236)
+++..+=.-...|++-+.+++++|..|+-.+++++.|++|..+|.+.|..|....-.-.+.++. +..|.+..
T Consensus 120 ~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~ 193 (401)
T PF06785_consen 120 EVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQH 193 (401)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 3555555666788888888889999999999999999999999999886666554444444443 33455543
No 135
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=84.87 E-value=1 Score=42.83 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKA 149 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~ 149 (236)
+|||.|+.+|.-|+.+|..|-||+|.||.
T Consensus 312 EYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 312 EYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred HHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 79999999999999999999999999984
No 136
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.67 E-value=8 Score=32.35 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEK 151 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ek 151 (236)
.|+.-+.+|..++..|++++..+..+|..|....
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~ 44 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKN 44 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666655555555444333
No 137
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.67 E-value=6.3 Score=43.06 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=56.3
Q ss_pred HHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 85 KLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAE 164 (236)
Q Consensus 85 R~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~e 164 (236)
...++++++.+..|..-+ ... + ++-.=|...+.-..+|+.++.+|+.++..+.+++++++.+...|..+...+..+
T Consensus 849 ~~e~e~~~~eI~~Lq~ki-~el--~-~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1311)
T TIGR00606 849 RKLIQDQQEQIQHLKSKT-NEL--K-SEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE 924 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 445666677777776666 332 2 222333447778888888888888888888888887777777777776666666
Q ss_pred HHHHHHHH
Q 026599 165 KEKIEQQL 172 (236)
Q Consensus 165 kekLe~ql 172 (236)
++++..+.
T Consensus 925 ~~~~~~~~ 932 (1311)
T TIGR00606 925 KEELISSK 932 (1311)
T ss_pred HHHHHHHH
Confidence 65554433
No 138
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=84.54 E-value=6.5 Score=37.61 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQ 159 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~ 159 (236)
-+..|..+.++|+.+...+..++..+..+|.++..+..
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~ 182 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLY 182 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777888888888888888888888877765543
No 139
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=84.26 E-value=14 Score=27.23 Aligned_cols=55 Identities=29% Similarity=0.454 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
-|..=|+--..|++++.+.+..|-.++..+++-.....+|..+...|+.+++.+.
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555566666777777777877777777776666555566666666666665543
No 140
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.08 E-value=6.3 Score=35.46 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLK 134 (236)
Q Consensus 122 ylkqLr~qv~~Lk 134 (236)
=+++++.+++.|.
T Consensus 217 E~~~~r~~~~~l~ 229 (312)
T PF00038_consen 217 ELKELRRQIQSLQ 229 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhh
Confidence 3333333333333
No 141
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=84.05 E-value=11 Score=36.51 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=58.0
Q ss_pred HHHHHhHHHHhhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH----HHH-HHHHHHHHH
Q 026599 89 DRLNDKFVELASILE-PGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAE----KNE-LRDEKQRLK 162 (236)
Q Consensus 89 dkLNerF~eL~slL~-P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~E----knE-LrdEk~~Lk 162 (236)
+.|-++|.+|..+|- |..-+..++..=|+.-...|..+-....++++..+.|.+--.-|..+ ..| .++|...|+
T Consensus 10 ~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~ 89 (363)
T COG0216 10 ESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELE 89 (363)
T ss_pred HHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 456779999998882 33223456666666666666666666666665555554322222222 123 477899999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 026599 163 AEKEKIEQQLKAMSTQP 179 (236)
Q Consensus 163 ~ekekLe~qlk~~~~~p 179 (236)
.+++.|+.+|+.+=.|+
T Consensus 90 ~~~~~le~~L~~lLlPk 106 (363)
T COG0216 90 AKIEELEEELKILLLPK 106 (363)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999875543
No 142
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.92 E-value=15 Score=34.28 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=43.3
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 026599 79 SKACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEK 158 (236)
Q Consensus 79 ~ka~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk 158 (236)
.|..-|=.|.+-=|....+--.-| -+.+.-||----+.+--+-+.+++.+..+|.++++.|+.+..++..+..+|+-||
T Consensus 101 EhiD~elvrkEl~nAlvRAGLktL-~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 101 EHIDVELVRKELKNALVRAGLKTL-QRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443333 2222334444444444444555555555555555555555555544444455455
Q ss_pred HHHHHHHHHH
Q 026599 159 QRLKAEKEKI 168 (236)
Q Consensus 159 ~~Lk~ekekL 168 (236)
++|.....+|
T Consensus 180 s~LeE~~~~l 189 (290)
T COG4026 180 SRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHhc
Confidence 4444433333
No 143
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=83.77 E-value=5.2 Score=36.63 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEK 151 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~Ek 151 (236)
.+.+.++..|+.+|+.|..++..|+.|.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554444444444333
No 144
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.65 E-value=11 Score=41.03 Aligned_cols=88 Identities=25% Similarity=0.369 Sum_probs=63.4
Q ss_pred HHHHHHHHHhHHHHhhhcCCC----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 026599 85 KLRRDRLNDKFVELASILEPG----RPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQR 160 (236)
Q Consensus 85 R~RRdkLNerF~eL~slL~P~----~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~ 160 (236)
|.+.+.++.++..+.+-+.=. .+.--+|-.-|...| ..|+.++.+|+++...+.++++....|+...+.+...
T Consensus 371 k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~ev---ek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~ 447 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEV---EKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQ 447 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 446667777777776665111 111235555555544 4567788999999999999999888888888888889
Q ss_pred HHHHHHHHHHHHHHh
Q 026599 161 LKAEKEKIEQQLKAM 175 (236)
Q Consensus 161 Lk~ekekLe~qlk~~ 175 (236)
|+..++....+|+.+
T Consensus 448 l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 448 LRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888875
No 145
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=83.61 E-value=3.6 Score=28.38 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 026599 155 RDEKQRLKAEKEKI 168 (236)
Q Consensus 155 rdEk~~Lk~ekekL 168 (236)
+.++..||.++.++
T Consensus 33 Kk~kL~LKDei~~l 46 (49)
T PF04325_consen 33 KKEKLRLKDEIYRL 46 (49)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 146
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=83.57 E-value=17 Score=27.40 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
.++++...++.++++...+..|+..+..+.|++-
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~ 60 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELL 60 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 147
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.57 E-value=5 Score=41.11 Aligned_cols=46 Identities=24% Similarity=0.480 Sum_probs=23.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
++.|+.++..+++++..+..+.+.|+.|+...-..+..|+.+|..+
T Consensus 17 a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 17 AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555555443
No 148
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.55 E-value=5.4 Score=42.55 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
|..+=-+.|++|..+++.|++.+..|+-+.++|..+..++..+.+.|+.+.+.|+.||+-
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~ 717 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGI 717 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444455555555666666666666666666666666666777788888888888874
No 149
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.42 E-value=4.1 Score=42.02 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQ 159 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~ 159 (236)
+..-.+-++.|..++++|+.+|..|+.++.+++.+..+|+.+..
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~ 460 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE 460 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777777777777776666666655433
No 150
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.39 E-value=8.6 Score=33.78 Aligned_cols=50 Identities=30% Similarity=0.420 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+|..++.+|+.....|+++...++.++.+...|..+|+++.+.+++++..
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444444444444555555555554444443
No 151
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=83.37 E-value=7.7 Score=31.88 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNS-SLQEKIKELKAEK--------NELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~-~L~eeik~Lk~Ek--------nELrdEk~~Lk~ekekLe~qlk 173 (236)
..+|-+|+.+|..+++.-..+.+ .++..|+.+.... .+|+.+...|+.++.+||++++
T Consensus 41 ~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 41 AEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36788899998888875444332 2333344433333 4677777777777777777765
No 152
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.27 E-value=6.7 Score=33.78 Aligned_cols=49 Identities=20% Similarity=0.427 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
+++|..+++.+...++.|+.|+-.|..+.|-+.+....|+.|-..|=+.
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555666677777777777777777777777666665443
No 153
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.23 E-value=6.6 Score=36.89 Aligned_cols=12 Identities=33% Similarity=0.241 Sum_probs=5.0
Q ss_pred HHHhHHHHhhhc
Q 026599 91 LNDKFVELASIL 102 (236)
Q Consensus 91 LNerF~eL~slL 102 (236)
|+.....|..++
T Consensus 163 L~~~~~~l~~~~ 174 (312)
T smart00787 163 LMKELELLNSIK 174 (312)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 154
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.90 E-value=12 Score=37.11 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
+|+.++.+++.++.++..++.+...+.++++..+..+...+..|+.|
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
No 155
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=82.81 E-value=4.3 Score=37.34 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=7.2
Q ss_pred HHHhhhhHHHHHHHH
Q 026599 133 LKDSNSSLQEKIKEL 147 (236)
Q Consensus 133 Lk~~n~~L~eeik~L 147 (236)
|+++|+.|.+++.+|
T Consensus 71 l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 71 LEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555444444
No 156
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=82.80 E-value=7.4 Score=35.83 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
+.+-+.-+.+|++|.++|++++..|..+... ...+|+.||.+|+.
T Consensus 61 ~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 61 ISENLKDVNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3444445556677888888877766444322 22335555555554
No 157
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=82.70 E-value=10 Score=38.43 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=55.8
Q ss_pred HHHHHHHHHhHHHHhhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 85 KLRRDRLNDKFVELASILE-PGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 85 R~RRdkLNerF~eL~slL~-P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
--=+..||+-|..|..+.. |. ...-|.+||+.|=.++.++...-+.|+.....+..+|.....+.|.|-++...|-.
T Consensus 107 ~sl~~~L~~ff~s~q~la~~P~--~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~ 184 (552)
T COG1256 107 SSLSTLLNDFFNSLQELASNPS--DTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNK 184 (552)
T ss_pred ccHHHHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678888888888872 33 24678889999988888888888888777777777777777777766555444444
Q ss_pred HH
Q 026599 164 EK 165 (236)
Q Consensus 164 ek 165 (236)
+|
T Consensus 185 qI 186 (552)
T COG1256 185 QI 186 (552)
T ss_pred HH
Confidence 43
No 158
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=82.56 E-value=4.7 Score=33.61 Aligned_cols=65 Identities=31% Similarity=0.419 Sum_probs=41.8
Q ss_pred HHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 91 LNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQL-RSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 91 LNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqL-r~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
|++.+..|-.=| + +.|.|-+-+..++ +..-++++.....-..-|-.|+.|+|-|++||..|+.|.
T Consensus 54 L~e~i~~LE~RL---R-------aGlCDRC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 54 LHENIKVLENRL---R-------AGLCDRCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHH---h-------cccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 555555555555 1 3345555555554 334556666555444468889999999999999998875
No 159
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.52 E-value=7.6 Score=34.87 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=29.4
Q ss_pred HHhhhcCCCCCCCCchhhhH-----------HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 026599 97 ELASILEPGRPPKTDKAAIL-----------IDAVRMVTQLRSEAQKLKDSNSSLQEKIK 145 (236)
Q Consensus 97 eL~slL~P~~~~K~DKAsIL-----------~dAI~ylkqLr~qv~~Lk~~n~~L~eeik 145 (236)
.|.+|+|-+. -..+|..+- .+--.|+.+|.++.+...+...+|.+.+.
T Consensus 47 vLQsLvDD~l-V~~eKIgtSnyywsfps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~e 105 (203)
T KOG3433|consen 47 VLQSLVDDGL-VIKEKIGTSNYYWSFPSEAICDRKSVLQELESQLATGSQKKATLGESIE 105 (203)
T ss_pred HHHHHhccch-HHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Confidence 4666665553 345555544 33345677788888877777766666543
No 160
>PF14282 FlxA: FlxA-like protein
Probab=82.25 E-value=6 Score=31.46 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEK----IKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~ee----ik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
-..|+.|+.+++.|.+.+..|... .+.-......|..+...|.+++-.++.+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777766666551 112222222344445555555555444443
No 161
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=81.84 E-value=34 Score=38.15 Aligned_cols=9 Identities=44% Similarity=0.630 Sum_probs=4.5
Q ss_pred CCCCCcccc
Q 026599 29 SASGFTWTV 37 (236)
Q Consensus 29 ~~~~f~w~~ 37 (236)
|.=||++..
T Consensus 396 PFIGfTy~~ 404 (1317)
T KOG0612|consen 396 PFIGFTYTH 404 (1317)
T ss_pred Ceeeeeecc
Confidence 334566653
No 162
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=81.70 E-value=16 Score=34.69 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
-|+||=+.=|.+-+.|..+.+. |..+-.+||+.-+.|..||..|.+.|..
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~-------Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEG-------LEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788876655555555444444 4444444555555555555555554443
No 163
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=81.70 E-value=13 Score=29.49 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKEL--KAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~L--k~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
..|++++.+.+.....++.+++.| ..+.++|+-+...++.++..++.+|+.++
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344455555566666666666666 66666666666666666666666666654
No 164
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=81.63 E-value=5.5 Score=37.21 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=34.4
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026599 87 RRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKN 152 (236)
Q Consensus 87 RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn 152 (236)
=|+++|+.=.+.+++++ ....+.+. +.+.-.-+++|++++++++.+.+.+.++++++....+
T Consensus 4 l~~~~~~~~~~~r~l~~-~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (378)
T TIGR01554 4 LKEQREEIVAEIRSLLD-KAEKLEKE---LTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTE 65 (378)
T ss_pred HHHHHHHHHHHHHHHHh-hhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 37788888888888884 11112222 2222223446666666666666666666555544333
No 165
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=81.39 E-value=5.5 Score=37.79 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCCCC
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM-STQPSFLTP 184 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~-~~~p~~~p~ 184 (236)
-|+..|+....+.+++...+..+..+.++|.....+-|.|.|++.+.|.++ ++.|+||..
T Consensus 109 vlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdE 169 (338)
T KOG3647|consen 109 VLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDE 169 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 345555555556666666667777777788888888889999999999986 567888765
No 166
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.36 E-value=12 Score=38.22 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
.|...++-+..||.+|++|++.|+..+++|+..|..+
T Consensus 421 Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 421 ELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444456667788999999999999999999999885
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.36 E-value=12 Score=34.92 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHh
Q 026599 162 KAEKEKIEQQLKAM 175 (236)
Q Consensus 162 k~ekekLe~qlk~~ 175 (236)
..+.+.++.|+...
T Consensus 112 ~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 112 QEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 168
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=81.33 E-value=14 Score=31.48 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=8.6
Q ss_pred HHHHhHHHHhhhc
Q 026599 90 RLNDKFVELASIL 102 (236)
Q Consensus 90 kLNerF~eL~slL 102 (236)
.+...|.+|++=+
T Consensus 55 ~~~a~~~eLr~el 67 (177)
T PF07798_consen 55 LFKAAIAELRSEL 67 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 4556677777766
No 169
>PF14282 FlxA: FlxA-like protein
Probab=81.26 E-value=8.1 Score=30.70 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKD----SNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~----~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
+..--+-|+.|+.++++|.. ..+.-++.++.|..++..|......|..++..-+
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555544 1123334444444455555444444444443333
No 170
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.14 E-value=5.7 Score=41.05 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
+..--+.|+.|+.+++.|+..++.++.+|..|+.+..+++
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666666555555555443
No 171
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.09 E-value=7.2 Score=39.06 Aligned_cols=55 Identities=29% Similarity=0.506 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEK---------------IKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~ee---------------ik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
.-+..|..+.+.|+++|+.|+.. -.++..+..+|.+|.+.|+..+..|+.+|+.+
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555666666777777776542 23444455555555555566666666666543
No 172
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=81.06 E-value=5.9 Score=28.92 Aligned_cols=37 Identities=22% Similarity=0.473 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
..|+.++..+....+-+|.|++.++.+++++++-++-
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666677777777777776666655
No 173
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=80.73 E-value=13 Score=32.45 Aligned_cols=60 Identities=18% Similarity=0.375 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
.=|.+++..|.+=+.+...|.+-|.-|.+........-..|.+|...|..+-+++..+|.
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777766666677777777777666666666555666666666666666555554
No 174
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.69 E-value=9.5 Score=28.11 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
..|.+|+.++.-++..++.|.+.+-....+...|+.+...|...+..++.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666777777777777777766666666666777666666666666553
No 175
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=80.68 E-value=11 Score=33.63 Aligned_cols=47 Identities=26% Similarity=0.458 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 113 AAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 113 AsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
..=.-+.+..+.+|+++.++|++++..|+.+..++ +++++||.+|+.
T Consensus 61 ~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~ 107 (276)
T PRK13922 61 VSGVFESLASLFDLREENEELKKELLELESRLQEL----EQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 33344445556666666667776666666654433 245555555554
No 176
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.65 E-value=10 Score=31.69 Aligned_cols=50 Identities=18% Similarity=0.378 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+|..+++.|....++..+-++..+.+..+++++....+.+++.+++-+..
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEG 114 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34456666665555555555556666666666666666666666555544
No 177
>PRK02224 chromosome segregation protein; Provisional
Probab=80.48 E-value=14 Score=38.13 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=17.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 134 KDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 134 k~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+.....+++++..+..+..++.++...++.++.+++.+++.
T Consensus 257 ~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~ 297 (880)
T PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDD 297 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444443333
No 178
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=80.42 E-value=6 Score=31.53 Aligned_cols=32 Identities=13% Similarity=0.328 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
.++.++.+++.+..+|+++|..|+.|+++|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34445555555555666666666666666654
No 179
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=80.39 E-value=7.2 Score=39.31 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=12.6
Q ss_pred HHHHHHHHHhHHHHhhhc
Q 026599 85 KLRRDRLNDKFVELASIL 102 (236)
Q Consensus 85 R~RRdkLNerF~eL~slL 102 (236)
.++.+++++.+..|+...
T Consensus 49 ~~~~~~~~~~l~~L~~~~ 66 (646)
T PRK05771 49 RSLLTKLSEALDKLRSYL 66 (646)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 345666777777777776
No 180
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.33 E-value=7.8 Score=36.94 Aligned_cols=49 Identities=22% Similarity=0.439 Sum_probs=38.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hC
Q 026599 129 EAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM-ST 177 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~-~~ 177 (236)
+.+++...+..|+.+++.+..|+.|+..|....+....||+++|-.+ +.
T Consensus 134 qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g 183 (319)
T PF09789_consen 134 QLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNG 183 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34677777888888888888888888888888888888888888773 44
No 181
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.27 E-value=12 Score=30.65 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
|..+-..|+..+..|+.+...+...+++|+.+...+..
T Consensus 35 L~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 35 LAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443333
No 182
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=80.22 E-value=12 Score=27.56 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=14.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
...+..+...++.++..++.|.++|+.|...|.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444444444444444444444443
No 183
>PF15294 Leu_zip: Leucine zipper
Probab=80.19 E-value=5.5 Score=37.31 Aligned_cols=58 Identities=26% Similarity=0.411 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 112 KAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 112 KAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
|-.-|.+. .-.--|..++.+|+++|++|.+.++.+.......-+|+..|+.++..|+.
T Consensus 117 KL~pl~e~-g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 117 KLEPLNES-GGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred cccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 22344667788888888888888888888888888888888888777776
No 184
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=80.17 E-value=8 Score=28.26 Aligned_cols=58 Identities=16% Similarity=0.317 Sum_probs=34.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 110 TDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 110 ~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
-+|-..|.++-..|.+...-+.+++-+...+.. .+++.+.......+++..+|+.+|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666666666666666666666655544432 4445555555566666666666664
No 185
>PRK14127 cell division protein GpsB; Provisional
Probab=80.03 E-value=11 Score=30.78 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 149 AEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 149 ~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.|..+|++|+..|+.++..++.++..
T Consensus 44 ~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 44 KEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444445555555555555555543
No 186
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.03 E-value=7.9 Score=39.40 Aligned_cols=37 Identities=35% Similarity=0.542 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
.|+.++..++..+.-|.+|+..||.|..+|..+|+.+
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3444556667777777778888888888888877764
No 187
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=79.95 E-value=13 Score=33.00 Aligned_cols=59 Identities=25% Similarity=0.352 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 112 KAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 112 KAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
|+-.|.-|. ++.|-.-...+..+|..|..++..|..+...|+..+..|..++..|..+-
T Consensus 142 k~~ale~~A--~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq 200 (206)
T PF14988_consen 142 KAQALELAA--KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQ 200 (206)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 44455666667777777777777777777777777777777777766553
No 188
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=79.90 E-value=8.7 Score=35.20 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
|....+.....++.+-.+-.....+....+.+|..||..|+.+++.|++++..+
T Consensus 195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333335555556666677777777777777776664
No 189
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.84 E-value=37 Score=30.56 Aligned_cols=15 Identities=13% Similarity=0.364 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 026599 160 RLKAEKEKIEQQLKA 174 (236)
Q Consensus 160 ~Lk~ekekLe~qlk~ 174 (236)
.|..++..|+.+|..
T Consensus 121 ~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 121 DLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555544
No 190
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.67 E-value=18 Score=31.85 Aligned_cols=46 Identities=26% Similarity=0.383 Sum_probs=37.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 110 TDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 110 ~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
.||. .|..+-..++.+..++..|+.+++.|......|..|+++|.+
T Consensus 83 kdK~-~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 83 KDKQ-SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 567777788888889999999999888888888888888864
No 191
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=79.65 E-value=2.7 Score=31.17 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 137 NSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 137 n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
.+.|.+.|.+|....++|..||..||+
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555666667777766
No 192
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=79.63 E-value=16 Score=35.40 Aligned_cols=52 Identities=31% Similarity=0.509 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKE----------LKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~----------Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
-++|+.+++.|+.+...+..+|+. |+.+..+|+++...|+.+...++.++..
T Consensus 37 ~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 37 RRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555455544443 4444445555555555555555555555
No 193
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=79.57 E-value=16 Score=26.81 Aligned_cols=34 Identities=35% Similarity=0.405 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
+.+++.++++++.+++.++++...|+.|.+.|.+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455555555555555555555555555555543
No 194
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.52 E-value=10 Score=37.51 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQ 159 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~ 159 (236)
|++|+.++..++.+......+++.+...+.++...+.
T Consensus 68 lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 68 LKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 4444444444444444444444444444333333333
No 195
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.47 E-value=12 Score=34.36 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 026599 157 EKQRLKAEKEKIEQQL 172 (236)
Q Consensus 157 Ek~~Lk~ekekLe~ql 172 (236)
|.+.++.++..|+.+|
T Consensus 97 E~~~ak~r~~~le~el 112 (239)
T COG1579 97 EIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 196
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=79.45 E-value=6.4 Score=37.31 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQP 179 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p 179 (236)
..|+.++.+++..++.|++..++|.. +...++.++++++.+++.+..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 52 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEA-------ENEKLERELERLKSELEKLKSPP 52 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhCCC
Confidence 34455555555555555544444444 44445556666666666665544
No 197
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.44 E-value=9.9 Score=34.85 Aligned_cols=50 Identities=32% Similarity=0.442 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
+..|..+++.+++...+|..++..|..+..+|+++...|+.++.+++..+
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444444444444444444444444433
No 198
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=79.37 E-value=6.6 Score=37.23 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
=.+++++|+.+++.|+..+..|..+.+.++.+..++++++..|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 6 LEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345677888899999999999999999999888888877776654
No 199
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=79.23 E-value=10 Score=30.96 Aligned_cols=52 Identities=31% Similarity=0.424 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
++.++..++.+..+|..|-+..-.+..+..++|++...+..+...|+.++..
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~ 80 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQE 80 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555444444444444444444444444444444443
No 200
>PRK02224 chromosome segregation protein; Provisional
Probab=79.03 E-value=20 Score=36.85 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhhHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIK 145 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik 145 (236)
++.++.+|+..+..+++++.
T Consensus 347 ~~~~~~~le~~~~~l~~~~~ 366 (880)
T PRK02224 347 LREDADDLEERAEELREEAA 366 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334333333333333
No 201
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=78.90 E-value=3.1 Score=32.14 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 152 NELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 152 nELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
+|+++||..||.++.+|+.+|+.+.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777654
No 202
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.89 E-value=11 Score=38.41 Aligned_cols=47 Identities=30% Similarity=0.331 Sum_probs=29.4
Q ss_pred CchhhhH----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 110 TDKAAIL----IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 110 ~DKAsIL----~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
.+++.++ ..-+.-+.+++++.-+|..+...++++++++..|++|+..
T Consensus 211 N~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~ 261 (596)
T KOG4360|consen 211 NTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDE 261 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4455555 2223334455566666667777778888888888777654
No 203
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=78.78 E-value=18 Score=28.47 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAE 150 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~E 150 (236)
|++=..=-+++++.++++|.++|+.|..|+.....+
T Consensus 17 i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~q 52 (87)
T PF10883_consen 17 ILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQ 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556666666666555555554444333
No 204
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=78.73 E-value=17 Score=28.84 Aligned_cols=57 Identities=23% Similarity=0.391 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.+..+-|.+++.+--.++..|..|-.++.+|+.+...-++ ...++.++++++..++.
T Consensus 13 ~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 13 RSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKK 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHH
Confidence 3444555566666666666777777777777666555433 45566777777777765
No 205
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=78.53 E-value=2.7 Score=42.93 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 137 NSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 137 n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
...|+..+++|.+|...||.||..||.+++-+..+=+.
T Consensus 304 ~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~ 341 (655)
T KOG4343|consen 304 MLGLEARLQALLSENEQLKKENATLKRQLDELVSENQR 341 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcc
Confidence 34566666777777667777777777766666654333
No 206
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=78.48 E-value=23 Score=27.95 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=5.5
Q ss_pred HhHHHHhhhc
Q 026599 93 DKFVELASIL 102 (236)
Q Consensus 93 erF~eL~slL 102 (236)
+++.-|-+++
T Consensus 3 dkI~rLE~~~ 12 (86)
T PF12711_consen 3 DKIKRLEKLL 12 (86)
T ss_pred hHHHHHHHHh
Confidence 4455566666
No 207
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=78.41 E-value=26 Score=26.33 Aligned_cols=44 Identities=18% Similarity=0.409 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
+..++.|+..++++.+....+++++..+..|.+++-.+-..+..
T Consensus 18 ~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~ 61 (90)
T PF06103_consen 18 IKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLE 61 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666665444444443
No 208
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=78.31 E-value=9.7 Score=35.31 Aligned_cols=83 Identities=24% Similarity=0.311 Sum_probs=54.1
Q ss_pred HHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVT-QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 89 dkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylk-qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
|.||+-+...+.-+ -.. ....|-.||+.++.-+. -.+..+-..-..|..++.++..-+.+.++|.++...|++|++.
T Consensus 141 del~e~~~~el~~l-~~~-~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 141 DELNEMRQMELASL-SRK-IQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 111 23456778886665443 3555555555677778888888888888888888888888888
Q ss_pred HHHHHH
Q 026599 168 IEQQLK 173 (236)
Q Consensus 168 Le~qlk 173 (236)
|..+.+
T Consensus 219 L~~~~~ 224 (258)
T PF15397_consen 219 LQAQAQ 224 (258)
T ss_pred HHHhhc
Confidence 888776
No 209
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.16 E-value=9.8 Score=39.80 Aligned_cols=6 Identities=17% Similarity=-0.224 Sum_probs=3.0
Q ss_pred CCcccc
Q 026599 210 PGVAMW 215 (236)
Q Consensus 210 pg~~mw 215 (236)
.|+-||
T Consensus 668 g~~k~~ 673 (782)
T PRK00409 668 GIMKMK 673 (782)
T ss_pred CCEEEE
Confidence 345555
No 210
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.13 E-value=18 Score=27.97 Aligned_cols=57 Identities=28% Similarity=0.480 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQE---KIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~e---eik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
.+.-+.+|+.+-..+..+...+.. +..+|..+..+++++...|..+...++.++..+
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666555533 456677777777777777777777777777763
No 211
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=78.12 E-value=11 Score=39.21 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
+...+++|+++...-+.|+..||
T Consensus 112 ~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 112 INTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 33344444444433333333333
No 212
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.84 E-value=1.8 Score=34.04 Aligned_cols=46 Identities=33% Similarity=0.575 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
+.=+||.+|..++..|..+|..|..++..|..+..+++.....|+.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~ 67 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQR 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 4456777777777777777777666666665555555544444443
No 213
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=77.59 E-value=43 Score=28.82 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRL 161 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~L 161 (236)
-+.+++.+++.|+.+...|.+.|+.+-....+.+.+...+
T Consensus 23 ~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 23 EHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777766666666666555443
No 214
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=77.41 E-value=6.1 Score=33.65 Aligned_cols=59 Identities=29% Similarity=0.456 Sum_probs=48.8
Q ss_pred HHHHHHHH----HHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMV----TQLRSEAQKLKDSNS----SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 116 L~dAI~yl----kqLr~qv~~Lk~~n~----~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
|-.+|.+| .+||++.+.|++... ....|++.|......+.+-...|+++.|+-+++|++
T Consensus 46 LLV~IcVigsQ~~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkA 112 (138)
T PF03954_consen 46 LLVVICVIGSQNSQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKA 112 (138)
T ss_pred HHHHHHhhcCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhh
Confidence 34455555 588899999988655 566679999999999999999999999999999997
No 215
>PRK04325 hypothetical protein; Provisional
Probab=77.35 E-value=12 Score=28.16 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
..|.+|+.++.-++..++.|.+.+-.-..+..+|+.+...|..+...++
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4588888888888888888888887777777888777777766555544
No 216
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=77.26 E-value=13 Score=29.39 Aligned_cols=40 Identities=25% Similarity=0.261 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNE 153 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknE 153 (236)
++++-.+.++--|.=++.+++++|++|++|+..|+.|+--
T Consensus 9 ~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~ 48 (87)
T PF10883_consen 9 GVGAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKAV 48 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677778889998888888887777766653
No 217
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=77.18 E-value=7.3 Score=39.26 Aligned_cols=30 Identities=37% Similarity=0.607 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
++.+++.++..++++|++|...|+.+++.|
T Consensus 97 ~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 97 KIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444433
No 218
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=77.06 E-value=12 Score=38.33 Aligned_cols=55 Identities=20% Similarity=0.322 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
.|...|+.+...+++.+..+.+++..|+.|+.........|...+.+|+.++...
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~ 69 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEP 69 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4899999999999999999999999999999999999999999999998888753
No 219
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=76.94 E-value=24 Score=32.63 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=52.9
Q ss_pred HHHHHhHHHHhhhc-CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASIL-EPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 89 dkLNerF~eL~slL-~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
..||+-|..|..+- +|. ...-+.++|..|-.+...++.-...|.........+|+..-.+.|.|-++...|-.+|..
T Consensus 107 ~~l~~ff~a~~~ls~~P~--~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~ 184 (322)
T TIGR02492 107 TYLNNFFNALQELAKNPD--SEALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQ 184 (322)
T ss_pred HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777776 243 256688888888888888877777777766666777776666777766555555555543
No 220
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=76.90 E-value=1.7 Score=39.64 Aligned_cols=48 Identities=33% Similarity=0.503 Sum_probs=37.8
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhcCC-CC-CCCCchhhhHHHHHHHHHHHH
Q 026599 79 SKACREKLRRDRLNDKFVELASILEP-GR-PPKTDKAAILIDAVRMVTQLR 127 (236)
Q Consensus 79 ~ka~rER~RRdkLNerF~eL~slL~P-~~-~~K~DKAsIL~dAI~ylkqLr 127 (236)
+-+.|||.|=-.||+-|..||.+| | .. ++|+.|.-.|.-|-.||--|.
T Consensus 75 kaNaRER~RMH~LNdAld~LRevi-P~~~~~~klskIetl~~a~~yi~als 124 (254)
T KOG3898|consen 75 KANARERTRMHDLNDALDALREVI-PHGLHPPKLSKIETLRLAANYIAALS 124 (254)
T ss_pred cccchhhccccchhHHHHHhHhhc-cCcCCCCCCCcchhHHhhhcchhhhc
Confidence 345689999999999999999999 6 32 469999989977766666543
No 221
>PRK04406 hypothetical protein; Provisional
Probab=76.86 E-value=16 Score=27.79 Aligned_cols=50 Identities=6% Similarity=0.148 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
.-..|.+|+.++.-++..++.|.+.+-.-..+...|+.+...|..+...+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33578888888888888888888888777777888877777775555443
No 222
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.75 E-value=23 Score=32.06 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 114 AILIDAVRMVTQLRSEAQKLK-------DSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk-------~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
-.|.|...-+..|..+-..+. +....|+..|+.++.|++..++...++..|..+|..++..+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655432222 33445666666666666666666666655555555555553
No 223
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=76.74 E-value=26 Score=36.19 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
..+.+++.+++.++.....++.++..+..+...++.+...++.+.+.
T Consensus 440 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 486 (1179)
T TIGR02168 440 AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444333
No 224
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.70 E-value=13 Score=37.23 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 136 SNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 136 ~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+++.|+..++.|..|..+||.....||+.+++|....+.
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr 336 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQR 336 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 445566777888888888888888888888887766544
No 225
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=76.59 E-value=15 Score=28.54 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
|-.+..+|+.....-++||..|+.-...||.+....-.--.+|+.+..
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~ 50 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLL 50 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555556666666556666555544444444444443
No 226
>PRK02119 hypothetical protein; Provisional
Probab=76.57 E-value=19 Score=27.07 Aligned_cols=54 Identities=6% Similarity=0.075 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
....-..|.+|+.++.-++..++.|.+.+-.-..+...|+.+...|..+...++
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344456788888888888888888888877777777888777777766665554
No 227
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=76.56 E-value=12 Score=35.04 Aligned_cols=74 Identities=27% Similarity=0.331 Sum_probs=46.1
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 87 RRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 87 RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
-|||-..|..++-..+ .|-++-=..|+.+.+.|+..|..|..+.++|..+..++|+|...|+.+.-
T Consensus 84 aRDrKKaRm~eme~~i--------------~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 84 ARDRKKARMEEMEYEI--------------KDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred hhhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 4555555665555544 13334445567777777777777777777777777777777777776655
Q ss_pred HHHHHHHH
Q 026599 167 KIEQQLKA 174 (236)
Q Consensus 167 kLe~qlk~ 174 (236)
--...+..
T Consensus 150 ~~~~v~ee 157 (292)
T KOG4005|consen 150 HNTRVIEE 157 (292)
T ss_pred HhhHHHhh
Confidence 44444443
No 228
>PRK03918 chromosome segregation protein; Provisional
Probab=76.47 E-value=21 Score=36.54 Aligned_cols=13 Identities=8% Similarity=0.355 Sum_probs=6.0
Q ss_pred HHHHhHHHHhhhc
Q 026599 90 RLNDKFVELASIL 102 (236)
Q Consensus 90 kLNerF~eL~slL 102 (236)
.+......|...+
T Consensus 173 ~~~~~~~~l~~~l 185 (880)
T PRK03918 173 EIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 229
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=76.45 E-value=42 Score=34.96 Aligned_cols=8 Identities=13% Similarity=0.430 Sum_probs=3.8
Q ss_pred eeeecCCc
Q 026599 48 CVEIDSAF 55 (236)
Q Consensus 48 ~~~~~~~~ 55 (236)
.|-+||.+
T Consensus 641 ~vTldG~~ 648 (1164)
T TIGR02169 641 MVTLEGEL 648 (1164)
T ss_pred EEEeCcee
Confidence 34555543
No 230
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=76.25 E-value=26 Score=27.78 Aligned_cols=39 Identities=28% Similarity=0.493 Sum_probs=20.2
Q ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 129 EAQKLKDSNSS-LQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 129 qv~~Lk~~n~~-L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
.|..|+...+. .+..++.|..+.+.|.+|+..|+.+++.
T Consensus 35 KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 35 KVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554433 3445555555555555555555554443
No 231
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=76.17 E-value=7.5 Score=31.99 Aligned_cols=64 Identities=23% Similarity=0.417 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCC
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA-MSTQPSF 181 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~-~~~~p~~ 181 (236)
+|++.-.+.+++..+|-.+.-+||..+..|.+..+-.++|+..|+.|..-|-+-|+- |++..-|
T Consensus 46 ~a~e~~~d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVF 110 (120)
T KOG3650|consen 46 DAVEAENDVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVF 110 (120)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhh
Confidence 455666677788888888888999999999999999999999999999988888887 4444444
No 232
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=76.10 E-value=16 Score=35.35 Aligned_cols=51 Identities=29% Similarity=0.439 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAE----KNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~E----knELrdEk~~Lk~ekekLe~qlk~ 174 (236)
++|+.+++.|+.+-..+..+|+.++.. ..+|.++...|+.++..++.+++.
T Consensus 40 r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 94 (418)
T TIGR00414 40 KKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKA 94 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444444432211 223444444444444444444443
No 233
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.09 E-value=29 Score=34.93 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKI-----------KELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eei-----------k~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+.+++|+.+++++.++...++|+. ..|+.....+.+.+.....+|..||.||+-
T Consensus 382 ~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 382 RKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555554444443332 222322223344555666777788888876
No 234
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=76.02 E-value=21 Score=29.55 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+..|++-|.+|+.++.+++... +++|..++. .+..+...|+.+++.|+..|+..
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~---~~~I~~i~~---~~~~~~~~l~~~i~~l~~~l~~y 58 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEA---NDEIARIKE---WYEAEIAPLQNRIEYLEGLLQAY 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888877643 445544442 34567778899999999998884
No 235
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.00 E-value=15 Score=34.38 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
|..+-..|...+.++++++.....|+.+......++.+|.++
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444444444444444444433
No 236
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=75.93 E-value=11 Score=34.31 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNE 153 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknE 153 (236)
+|+.+++.|+.++..|+-.+.++.-+.++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 237
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=75.89 E-value=37 Score=28.21 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=41.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 110 TDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 110 ~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.+...-...+++..+.|..++......+..|+++++........-.+....|+..+..++.+++.
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567778888888888887777777777777655544444444445555555555555555
No 238
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.83 E-value=15 Score=36.78 Aligned_cols=64 Identities=13% Similarity=0.271 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
...+....-+.+|.+++..++.+...+.+.+..|+.+-.+.++....++..+..+...++..+.
T Consensus 376 ~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~l 439 (569)
T PRK04778 376 IAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNL 439 (569)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3377777777788888888888888888888888777777777777777777766666665433
No 239
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=75.67 E-value=48 Score=28.00 Aligned_cols=81 Identities=21% Similarity=0.443 Sum_probs=57.6
Q ss_pred HHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 90 RLNDKFVELASILEPGRPPKTDKAAILIDAVRMV-TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 90 kLNerF~eL~slL~P~~~~K~DKAsIL~dAI~yl-kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
.|++.|..|-.+++-+ . ...-.+.|+++-| .++...+...-.-...++.++..++.|...|++.+...+..+++|
T Consensus 5 el~~~~~~l~~~~e~~---~-~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~L 80 (162)
T PF05565_consen 5 ELTDEYLELLELLEEG---D-LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRL 80 (162)
T ss_pred HHHHHHHHHHHHHhcC---C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999888432 1 3334556666653 345566666666667778888888888888888888888888888
Q ss_pred HHHHHH
Q 026599 169 EQQLKA 174 (236)
Q Consensus 169 e~qlk~ 174 (236)
.+-|..
T Consensus 81 k~yL~~ 86 (162)
T PF05565_consen 81 KEYLLD 86 (162)
T ss_pred HHHHHH
Confidence 876665
No 240
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=75.55 E-value=8.3 Score=27.79 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
|++=..+|+.+-+.-.-+......+..+|+.||..|+++.+.++
T Consensus 6 l~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 6 LEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444443322222234566777788888888888887765
No 241
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=75.44 E-value=8.7 Score=26.74 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKA 149 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~ 149 (236)
++.+|..+++.|+.+|..|..++..|+.
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555555544443
No 242
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=75.26 E-value=28 Score=27.85 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHhHHHHhhhcCCC--CC-CCCchhhhHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 82 CREKLRRDRLNDKFVELASILEPG--RP-PKTDKAAILI-DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 82 ~rER~RRdkLNerF~eL~slL~P~--~~-~K~DKAsIL~-dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
..+|..| +-=|..|...|+.- +. ..-+...+.. ..+.+++=+|=-++=|-...+.|...+..|+.+..++..+
T Consensus 19 Dvd~i~~---~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~ 95 (118)
T PF13815_consen 19 DVDRIVR---ELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQE 95 (118)
T ss_pred CHHHHHh---ccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477766 44566677666321 00 1112222222 2346777778888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026599 158 KQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 158 k~~Lk~ekekLe~qlk~~ 175 (236)
...|+....+++.+++.+
T Consensus 96 ~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 96 IEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988875
No 243
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=75.25 E-value=20 Score=33.50 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=14.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Q 026599 135 DSNSSLQEKIKELKAEKNELRDEK 158 (236)
Q Consensus 135 ~~n~~L~eeik~Lk~EknELrdEk 158 (236)
+.|..+-++..+|+...++||..+
T Consensus 99 ~~~~r~~eey~~lk~h~d~lR~~~ 122 (286)
T KOG4451|consen 99 SCNGRKGEEYMELKSHADELRQIN 122 (286)
T ss_pred HhhcchhHHHHHHHHHHHHHHHHh
Confidence 345555566667777777777533
No 244
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.94 E-value=25 Score=30.38 Aligned_cols=58 Identities=19% Similarity=0.405 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 112 KAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 112 KAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
.-.+--.|+.-..+++.++..|+.....+...+..|+....+|+.....++.+++.|.
T Consensus 82 ~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 82 REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666666666665555555444444444444444444444443333
No 245
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=74.74 E-value=16 Score=29.51 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhh-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 82 CREKLRRDRLNDKFVELASILEPGRPPKTDKAAI-LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 82 ~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsI-L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
...++||..|......+-..+- ..++ +...+-.+..|..+++.++++++.|..+...|+.|.+.|+++
T Consensus 18 ~~~~~~~~~l~~~l~~~l~~f~--------~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 18 ERRVRRRRILTLVLLALLALFQ--------YLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445566566555555555541 1112 223334455566666666666666666666666666666555
No 246
>PLN02678 seryl-tRNA synthetase
Probab=74.68 E-value=26 Score=34.66 Aligned_cols=29 Identities=38% Similarity=0.441 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 146 ELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 146 ~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+|..+..+|++|...|..+...++.+|..
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555566666666655
No 247
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.39 E-value=21 Score=36.47 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 145 KELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 145 k~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
..++.|.+.|..++..+...+..|+..++.|
T Consensus 202 e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 202 EELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555544443
No 248
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.09 E-value=33 Score=29.06 Aligned_cols=45 Identities=22% Similarity=0.376 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
..|+.++..+......|..++..|+.|+..|..+.+..+..+..|
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443333333333
No 249
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.02 E-value=12 Score=36.29 Aligned_cols=9 Identities=78% Similarity=1.014 Sum_probs=3.9
Q ss_pred chhHHHHHH
Q 026599 80 KACREKLRR 88 (236)
Q Consensus 80 ka~rER~RR 88 (236)
++.+|++||
T Consensus 213 sa~~eklR~ 221 (365)
T KOG2391|consen 213 SAVREKLRR 221 (365)
T ss_pred HHHHHHHHH
Confidence 344444443
No 250
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=73.90 E-value=23 Score=33.57 Aligned_cols=37 Identities=35% Similarity=0.657 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
..+.+.+++|+.+++++-++.+.||.+...+...+..
T Consensus 51 rE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 51 RELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666676666666655544
No 251
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=73.83 E-value=22 Score=34.39 Aligned_cols=33 Identities=33% Similarity=0.599 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 143 KIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 143 eik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
..+.+...+.+|.++...|+.++..|+.+++..
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555666666666777777777777655
No 252
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.79 E-value=17 Score=32.92 Aligned_cols=57 Identities=25% Similarity=0.440 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
++-....+|+.+......+...|..++.++..++..|.++......|..+|+.++..
T Consensus 58 eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 58 EAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555556666777778888888888888777777777777777665
No 253
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.66 E-value=13 Score=38.10 Aligned_cols=9 Identities=44% Similarity=0.932 Sum_probs=4.7
Q ss_pred cccCccccC
Q 026599 11 LDYPLIDDI 19 (236)
Q Consensus 11 ~dy~~~~~~ 19 (236)
+-|+|.+.+
T Consensus 137 L~YPf~~si 145 (581)
T KOG0995|consen 137 LKYPFLLSI 145 (581)
T ss_pred CCCCcccch
Confidence 446665544
No 254
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.56 E-value=22 Score=30.23 Aligned_cols=31 Identities=32% Similarity=0.477 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 140 LQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 140 L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
+.+|++.|+.|..+...|...||.|.+.++.
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444443
No 255
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=73.43 E-value=36 Score=29.22 Aligned_cols=45 Identities=27% Similarity=0.477 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
-++|+.+++.|+.+|..|+..++.+......|.+....|+.+-..
T Consensus 91 ~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~ 135 (158)
T PF09744_consen 91 RKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNR 135 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHH
Confidence 456666666666666666655544444444444433344333333
No 256
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=73.43 E-value=21 Score=28.79 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=19.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 135 DSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 135 ~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
.....++..+..+..+...|..++..|++|+++|+..
T Consensus 50 ~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 50 ADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333444444455555555555666666666666555
No 257
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=73.20 E-value=12 Score=33.91 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 113 AAILIDAVRMVTQLRSEAQKLKD---SNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 113 AsIL~dAI~ylkqLr~qv~~Lk~---~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
++...|.-..-.+|++...+|+. ....|...++++..|.+.|-+|++.|+.+++
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 66666777777777776666654 5566777788888888888888888888775
No 258
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=73.14 E-value=22 Score=24.40 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
+|..+|..++.....-..++..||.++-.|+||...+.
T Consensus 10 ~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll 47 (49)
T PF04325_consen 10 ELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLL 47 (49)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333445556666666666655554
No 259
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=73.06 E-value=33 Score=33.96 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=53.7
Q ss_pred HHHHHhHHHHhhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASILE-PGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 89 dkLNerF~eL~slL~-P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
..||+-|..|..+-. |+ ...-+..+|..|-.+...++.-...|++....+..+|+..-.+.|.|-++...|-.+|.+
T Consensus 119 ~~l~~ff~a~~~la~~P~--~~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 196 (507)
T PRK07739 119 KVLDQFWNSLQELSKNPE--NLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAK 196 (507)
T ss_pred HHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777763 43 256688888888888888777777777766677777777777777766666655555543
No 260
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=73.01 E-value=21 Score=34.44 Aligned_cols=57 Identities=26% Similarity=0.500 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKA-------------EKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~-------------EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
.+-+++|+.++++++++.+.|+..+..++. ....++.....|..++.+|+.+++.+.
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666555555555544443 333455555666666666666666543
No 261
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=72.87 E-value=14 Score=35.26 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 112 KAAILIDAVRMVTQLRSEAQKLKDSN-----SSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 112 KAsIL~dAI~ylkqLr~qv~~Lk~~n-----~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
-+-|.++.++-..+||.+.+++-+.. --...+++++-....|||.|..+|+.++..|+.+
T Consensus 254 fak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 254 NAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35678888888888888877775532 2346778888888888888888888887777653
No 262
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=72.80 E-value=21 Score=34.11 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=43.9
Q ss_pred hHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 94 KFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIK---ELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 94 rF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik---~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
=|..|-..+ ++. .+.==|-| +--+|++.|+.++++|+.+.+.|.+.+. ..+..+.++.++...+..+++.++.
T Consensus 219 Yf~~l~~~f-~d~-a~~~~A~l--~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 219 YFENLYDAF-GDK-AKFFLAEL--NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHC-CCC-EEEEEEEE--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCC-eEEEEEEE--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777 542 11111111 2235667777777777776666665432 2334445666677777777777777
Q ss_pred HHHH
Q 026599 171 QLKA 174 (236)
Q Consensus 171 qlk~ 174 (236)
.++.
T Consensus 295 ~~~~ 298 (406)
T PF02388_consen 295 LIAE 298 (406)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 263
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=72.74 E-value=24 Score=33.00 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+-.-+...+.+.++.+.....+++++..|+.+.++...|+..|+.+++..+..|..
T Consensus 226 a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 226 AEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444455555555555666666666666666666666666666666666666554
No 264
>KOG3977 consensus Troponin I [Cytoskeleton]
Probab=72.67 E-value=25 Score=31.96 Aligned_cols=70 Identities=17% Similarity=0.352 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHH
Q 026599 83 REKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSN-------SSLQEKIKELKAEKNELR 155 (236)
Q Consensus 83 rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n-------~~L~eeik~Lk~EknELr 155 (236)
.|.++|+.=..++++=+.|.=|++ ...|-.+.|.+-+ ++|++++..|++++ .....||..|+++.|.||
T Consensus 61 qqq~~kEqErqr~LaeR~i~lp~~-d~l~d~g~Lq~ly---~~l~arv~~leEEkYDi~~~v~qt~~EIndLtikvnDLR 136 (221)
T KOG3977|consen 61 QQQELKEQERQRYLAERTIPLPDV-DSLDDRGLLQDLY---RELHARVDALEEEKYDIEAKVTQTETEINDLTIKVNDLR 136 (221)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCC-CcccchHHHHHHH---HHHHHHHHHHHHhhcchhheeehhhhhHHHHHHHHHHhc
Confidence 345566555556666665554888 4566666676655 58888988888754 244567999999999998
Q ss_pred H
Q 026599 156 D 156 (236)
Q Consensus 156 d 156 (236)
-
T Consensus 137 G 137 (221)
T KOG3977|consen 137 G 137 (221)
T ss_pred c
Confidence 5
No 265
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=72.66 E-value=21 Score=32.07 Aligned_cols=43 Identities=30% Similarity=0.316 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
.++.+.-+.|...-.+++.|++.|..|+++.++|+..+.-|.|
T Consensus 41 ~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDd 83 (195)
T PF10226_consen 41 RLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDD 83 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 4566777777777788899999999999998888887776655
No 266
>PRK15396 murein lipoprotein; Provisional
Probab=72.63 E-value=23 Score=27.36 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
|.+|..+|+.|.....+|..+++ .+|.+-+.-+.|-+|-+++|.
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~-------~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVN-------AMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666555555554444 444444444445554444443
No 267
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=72.42 E-value=54 Score=27.39 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=45.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 109 KTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIK-----ELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 109 K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik-----~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
...|.-++.+--.-+.+|..+.+.|+-+-..+..+++ .+..-...+..|++.+...+..+..+++.+.
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777777777777766666655543 3444445566778888888888888887753
No 268
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=72.14 E-value=21 Score=35.97 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
.++.+.+.++....+|+.+++.+..|++++++++..|..
T Consensus 372 ~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 372 DLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444445556666777777777777776665543
No 269
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.12 E-value=22 Score=34.48 Aligned_cols=56 Identities=27% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHh
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNE----------LRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknE----------LrdEk~~Lk~ekekLe~qlk~~ 175 (236)
++.|.+|-.+-.+|..+.+.|+.+.+++..+... |.+|...|+.++..++.+++.+
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556566666556665555544444432 3334445555555555555554
No 270
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=72.12 E-value=22 Score=37.24 Aligned_cols=13 Identities=46% Similarity=0.516 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 026599 162 KAEKEKIEQQLKA 174 (236)
Q Consensus 162 k~ekekLe~qlk~ 174 (236)
+.+.+.+-.+++.
T Consensus 578 ~~~~~~~i~~lk~ 590 (771)
T TIGR01069 578 KKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444443
No 271
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=72.08 E-value=20 Score=32.53 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
+.+-..-|.+|+.+|.+|+-.++.++.+++.++..-.++
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555554444444
No 272
>PRK15396 murein lipoprotein; Provisional
Probab=71.95 E-value=20 Score=27.72 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=35.5
Q ss_pred HHHhh-hcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 96 VELAS-ILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 96 ~eL~s-lL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
..|.. +| -|| ..+.|..=|.. -|..|..++.+|+.....+...+..-+ .|...-|++|..
T Consensus 11 v~ls~~LL-aGC-As~~kvd~Lss---qV~~L~~kvdql~~dv~~~~~~~~~a~---~eA~raN~RlDn 71 (78)
T PRK15396 11 VILGSTLL-AGC-SSNAKIDQLSS---DVQTLNAKVDQLSNDVNAMRSDVQAAK---DDAARANQRLDN 71 (78)
T ss_pred HHHHHHHH-HHc-CCchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34433 45 677 44455544443 456777888888888888877765544 344444444443
No 273
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=71.90 E-value=20 Score=27.94 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
.+|..+++.|......|.+++.....+.+.|
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 3344444444444444444444333333333
No 274
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=71.70 E-value=11 Score=28.41 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=44.1
Q ss_pred HHHHhHHHHhhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 90 RLNDKFVELASILEPGR--PPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 90 kLNerF~eL~slL~P~~--~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
.+..-..+|..+- ++. --..+++=|+.+.-.++..|..+.+.++.+...|..+.+++..+.++++..
T Consensus 30 ~~~~~~~eL~~l~-~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 30 ELELTLEELEKLD-DDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHTSS-TT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777754 552 114667777777777777777777777777777777766666666655443
No 275
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.69 E-value=25 Score=30.68 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhhhhHHH
Q 026599 125 QLRSEAQKLKDSNSSLQE 142 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~e 142 (236)
+|+.++++++.....|++
T Consensus 73 ~l~~~~~~~~~~i~~l~~ 90 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEE 90 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 276
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=71.65 E-value=31 Score=30.20 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=22.6
Q ss_pred HHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 026599 91 LNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQE 142 (236)
Q Consensus 91 LNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~e 142 (236)
+|..|..+..++.= .-.|+..++. .+..|.+++.++.+|+.++..|.+
T Consensus 85 f~~~~k~~~~ifke---gg~d~~k~~~-~l~~L~e~snki~kLe~~~k~L~d 132 (163)
T PF03233_consen 85 FESFFKDLSKIFKE---GGGDKQKQLK-LLPTLEEISNKIRKLETEVKKLKD 132 (163)
T ss_pred HHHHHHHHHHHHHh---cCCchhhHHH-HHHHHHHHHHHHHHHHHHHHhHhh
Confidence 45567777777721 1233322222 444444444455555444444433
No 277
>PLN02320 seryl-tRNA synthetase
Probab=71.45 E-value=33 Score=34.59 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKI---------KELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eei---------k~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
++|+.+++.|+.+...+..++ .+|+.+..+|+++...|+.+...++.+|..
T Consensus 103 r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 103 LALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444443333 345555556666666666666666666666
No 278
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=71.41 E-value=32 Score=30.58 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 109 KTDKAAILIDAVRMVTQLRSEAQKLKDSNSS--LQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 109 K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~--L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
-.|...=..|.-..|+.|+.+.++|.+-.++ --+++-++..+.++.+.|...++.++..|++++..
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 3444444445555555555555555543321 11223344444444455555555555555444444
No 279
>PRK00295 hypothetical protein; Provisional
Probab=71.39 E-value=31 Score=25.58 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
..|.+|+.++.-++..++.|.+.+-....+...|+.+...|..+...++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3588899999999988888888888888888888888888877776665
No 280
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=71.23 E-value=15 Score=32.70 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKE--LKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQP 179 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~--Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p 179 (236)
-.|-..-..+++.+++.|+.+.+.|++-.+. -..+.-++..|....+.|+|.++.+++.+...-
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555558999999999888777764432 123344778899999999999999999987644
No 281
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=70.81 E-value=6.8 Score=36.72 Aligned_cols=47 Identities=28% Similarity=0.306 Sum_probs=38.8
Q ss_pred chhHHHHHHHHHHHhHHHHhhhcCCCC--CCCCchhhhHHHHHHHHHHHH
Q 026599 80 KACREKLRRDRLNDKFVELASILEPGR--PPKTDKAAILIDAVRMVTQLR 127 (236)
Q Consensus 80 ka~rER~RRdkLNerF~eL~slL~P~~--~~K~DKAsIL~dAI~ylkqLr 127 (236)
-+.+||+|=..||.-|..|+.++ |.. ..|+.|-.-|..|-.||--|-
T Consensus 178 anarErrrm~gLN~AfD~Lr~v~-p~~~~d~~LSkyetLqmaq~yi~~l~ 226 (285)
T KOG4395|consen 178 ANARERRRMNGLNSAFDRLRLVV-PDGDSDKKLSKYETLQMAQGYILALG 226 (285)
T ss_pred cchHHHHHhhhHHHHHHHHHHhc-CCCCccchhhhhhHHHHHHHHHhhhH
Confidence 34689999999999999999999 753 358888888888888887653
No 282
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=70.80 E-value=60 Score=32.86 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
..-...+++++.++.+++.+...++.++..++.+..++
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555544444444444444444333
No 283
>PRK10869 recombination and repair protein; Provisional
Probab=70.79 E-value=38 Score=34.01 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=59.2
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 87 RRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKD---SNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 87 RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~---~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
|=+.+++|+..|..+- + |-. .=+.+.+.|..+++.+.+.|+. ..+.|+.++..++.+..++..+.+..+.
T Consensus 297 ~l~~ie~Rl~~l~~L~---r--Kyg--~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 297 RLAELEQRLSKQISLA---R--KHH--VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HHHHHHHHHHHHHHHH---H--HhC--CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888887 2 333 2478999999999999988875 4667788888888777777766665544
Q ss_pred H-HHH----HHHHHHHhhCC
Q 026599 164 E-KEK----IEQQLKAMSTQ 178 (236)
Q Consensus 164 e-kek----Le~qlk~~~~~ 178 (236)
+ .++ ++.+|+.++.+
T Consensus 370 ~aA~~l~~~v~~~L~~L~m~ 389 (553)
T PRK10869 370 RYAKELAQLITESMHELSMP 389 (553)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 4 333 44455555543
No 284
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=70.74 E-value=18 Score=30.88 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAE 164 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~e 164 (236)
.++||++| +.++++|++....+++++.+|.....+++.+.+.+-.+
T Consensus 92 ~~eAie~l---~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 92 ADEAIEFL---KKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666654 57888899988999999999999988888887776543
No 285
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=70.66 E-value=28 Score=35.61 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
+.|..++..|+.+|..|..++..++
T Consensus 165 ~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 165 KALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3344444445555555544444333
No 286
>PRK14011 prefoldin subunit alpha; Provisional
Probab=70.55 E-value=23 Score=29.97 Aligned_cols=52 Identities=25% Similarity=0.387 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+.+|++|++ .+++.|++....|.+.+.++..+.++++.+ |......++++.+
T Consensus 86 ~~eA~~~~~---~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~---L~~k~~~~~~~~~ 137 (144)
T PRK14011 86 VSEVIEDFK---KSVEELDKTKKEGNKKIEELNKEITKLRKE---LEKRAQAIEQRQA 137 (144)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 467777765 678888888888888888888888888755 3334444544433
No 287
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.49 E-value=23 Score=39.94 Aligned_cols=89 Identities=15% Similarity=0.236 Sum_probs=67.8
Q ss_pred HHHHHHHHHhHHHHhhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 85 KLRRDRLNDKFVELASILEPGR--PPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 85 R~RRdkLNerF~eL~slL~P~~--~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
+.++..++.+..+|..++ -.+ =.--|=+.+|++.-+..-+|+.+++++++....+.++.+..+.+.++...+...++
T Consensus 948 ~~~~~~~~~~~~~l~~~~-~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slk 1026 (1486)
T PRK04863 948 QQTQRDAKQQAFALTEVV-QRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLK 1026 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888999999998 321 02467788999999999999999999999998888888888888887777766666
Q ss_pred HHHHHHHHHHHH
Q 026599 163 AEKEKIEQQLKA 174 (236)
Q Consensus 163 ~ekekLe~qlk~ 174 (236)
..+..++.+++.
T Consensus 1027 sslq~~~e~L~E 1038 (1486)
T PRK04863 1027 SSYDAKRQMLQE 1038 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 665555555444
No 288
>PRK11415 hypothetical protein; Provisional
Probab=70.34 E-value=17 Score=27.35 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=20.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 026599 129 EAQKLKDSNSSLQEKIKELKAEKNE-LRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~EknE-LrdEk~~Lk~ekekLe~qlk~ 174 (236)
+..+|.++...|..+|..+.....- -.++...||.++.+|..+|..
T Consensus 18 ~F~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~ 64 (74)
T PRK11415 18 RFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLK 64 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 4444445555555555444432110 123344444444444444443
No 289
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=70.30 E-value=28 Score=36.05 Aligned_cols=76 Identities=16% Similarity=0.284 Sum_probs=53.4
Q ss_pred HHHHhHHHHhhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 90 RLNDKFVELASILE-PGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 90 kLNerF~eL~slL~-P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
.||+-|..|..+-. |. .-.-+..+|+.|-.++.+++.-...|.+....+..+|+....+.|.|-++...|-.+|.+
T Consensus 108 ~L~~Ff~alq~la~~P~--s~aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~ 184 (676)
T PRK05683 108 ALQRFFTALQTAAANPT--DTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQ 184 (676)
T ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666652 22 245688889999888888888888887777777777777777777776666666555543
No 290
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=69.94 E-value=73 Score=30.88 Aligned_cols=88 Identities=20% Similarity=0.352 Sum_probs=44.2
Q ss_pred HHHHHHhHHHHhhhc-CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-----HHHHHHHHHHHH
Q 026599 88 RDRLNDKFVELASIL-EPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKA-----EKNELRDEKQRL 161 (236)
Q Consensus 88 RdkLNerF~eL~slL-~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~-----EknELrdEk~~L 161 (236)
=+.+..++.+|...+ +|+.-....|+.-+..-+..++.+-...+++++....+.+ ..++-. -..++.+|...|
T Consensus 9 ~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~-~~el~~~~D~e~~~~a~~e~~~l 87 (360)
T TIGR00019 9 LESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKE-AKEILEESDPEMREMAKEELEEL 87 (360)
T ss_pred HHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCHHHHHHHHHHHHHH
Confidence 345667788888776 3443223333333333333333333332333332222221 111111 123456788889
Q ss_pred HHHHHHHHHHHHHhh
Q 026599 162 KAEKEKIEQQLKAMS 176 (236)
Q Consensus 162 k~ekekLe~qlk~~~ 176 (236)
+.++++++.+|+.+-
T Consensus 88 ~~~~~~~e~~l~~~l 102 (360)
T TIGR00019 88 EEKIEELEEQLKVLL 102 (360)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888743
No 291
>PRK00846 hypothetical protein; Provisional
Probab=69.84 E-value=33 Score=26.48 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
-..|.+|+.++.-.+...+.|...+.....+...|+.....|......++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677777777777777777777777777777777776666666555544
No 292
>PF14645 Chibby: Chibby family
Probab=69.80 E-value=16 Score=29.90 Aligned_cols=45 Identities=31% Similarity=0.361 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 128 SEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 128 ~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
.+.+.|+++|..|++|.+.|+.+..=|-|=.+.-.+|..-+|.+|
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666666555554444444555555443
No 293
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=69.75 E-value=38 Score=33.03 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=50.5
Q ss_pred HHHHHhHHHHhhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASILE-PGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 89 dkLNerF~eL~slL~-P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
..||+-|..|..+-. |. ...-+..+|..|-.+...++.-...|.+....+..+|+..-.+.|.|-++...|-.+|.+
T Consensus 107 ~~l~~ff~a~~~la~~P~--~~~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 184 (456)
T PRK07191 107 TGLNNFFSALSAATQLPD--SPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILK 184 (456)
T ss_pred HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777776662 32 245678888888888877777777776666666666666666666665555555555543
No 294
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.62 E-value=45 Score=25.04 Aligned_cols=48 Identities=35% Similarity=0.529 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
|..+..++...+..|...++++.....+|+.....+..+++.|+..++
T Consensus 24 LSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 24 LSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444444444444444444444555555555555555544
No 295
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=69.55 E-value=35 Score=33.46 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=52.4
Q ss_pred HHHHHhHHHHhhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASILE-PGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 89 dkLNerF~eL~slL~-P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
..||+-|..|..+-. |. ...-+..+|+.|-.+...++.-...|++.-..+.++|+....+.|.+-++...|-.+|.+
T Consensus 102 ~~l~~ff~a~~~la~~P~--~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 179 (483)
T PRK07521 102 ARLSDFQAALQTAASSPD--NTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVS 179 (483)
T ss_pred HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777776642 33 245577889988888888888777777766677777777777777766665555555543
No 296
>PRK00736 hypothetical protein; Provisional
Probab=69.49 E-value=32 Score=25.51 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
..|.+|+.++.-++..++.|...+-.-..+...|+.+...|..+....+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45888899988888888888888888888888888777777776655543
No 297
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=69.44 E-value=16 Score=36.37 Aligned_cols=46 Identities=26% Similarity=0.482 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
|..+.++|+.++..|..++++|..+-.+|..+...+..+++++.++
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~ 226 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEE 226 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555556666665555555555555555555543
No 298
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=69.26 E-value=14 Score=34.09 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026599 154 LRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 154 LrdEk~~Lk~ekekLe~qlk~ 174 (236)
+..+...|+.|..+|...|-.
T Consensus 88 ~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 88 LLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 334445555555555555543
No 299
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=69.14 E-value=46 Score=25.70 Aligned_cols=67 Identities=12% Similarity=0.274 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCCCC
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST--QPSFLTP 184 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~--~p~~~p~ 184 (236)
+||.---.=|+.+-.++..|+.....|+.... ...+|.+....+-+..+.++.++..+.. .|..+|.
T Consensus 4 NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~----~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~~~~~p~ 72 (75)
T PF05531_consen 4 NILLVIRQDIKAVDDKVDALQTQVDDLESNLP----DVTELNKKLDAQSAQLTTLNTKVNEIQDILNPDIVPD 72 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCC
Confidence 44444444444444444444444433333321 1224555566777777888887777543 3444554
No 300
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.09 E-value=35 Score=25.57 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
-..|.+|+.++.-++..++.|.+.+-.-..+...|+.+...|..+...++
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45788888888888888888888888888888888877777776666554
No 301
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=69.06 E-value=39 Score=34.49 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=51.2
Q ss_pred HHHHhHHHHhhhc-CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 90 RLNDKFVELASIL-EPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 90 kLNerF~eL~slL-~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
.|++-|..|..+- +|. .-.-+..+|..|-.+..+++.-...|++....+..+|...-.+.|.|-++...|-.+|.+
T Consensus 120 ~l~~ff~al~~ls~~P~--~~a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~ 196 (627)
T PRK06665 120 RLDDFWDSWQDLSNYPE--GLAERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVK 196 (627)
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677776665 243 246688889988888888887777777766666666666666666665555555555543
No 302
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=69.00 E-value=26 Score=26.67 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026599 151 KNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 151 knELrdEk~~Lk~ekekL 168 (236)
...|++|+..|+.|+.+|
T Consensus 51 ~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 51 IDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333444444443333
No 303
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.76 E-value=64 Score=33.76 Aligned_cols=40 Identities=38% Similarity=0.504 Sum_probs=24.6
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 117 IDAVR-MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 117 ~dAI~-ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
+++++ ..++|..++.+|+.+....++.+..++.|..+||.
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333 55677777777776666666666666666655543
No 304
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=68.68 E-value=47 Score=28.64 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.+.-..+..|+.+++.+......|...+..|+....+++.+...|++....-+.+.+.
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~ 151 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKV 151 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777787788888888888888777777777766666554
No 305
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.63 E-value=16 Score=39.95 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=21.3
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 026599 108 PKTDKAAILIDAVRMVTQLRSEAQKLKD 135 (236)
Q Consensus 108 ~K~DKAsIL~dAI~ylkqLr~qv~~Lk~ 135 (236)
+|+.|.++|.|=+.=|-.|+..+..-++
T Consensus 398 Qkl~K~~llKd~~~EIerLK~dl~AaRe 425 (1041)
T KOG0243|consen 398 QKLMKKTLLKDLYEEIERLKRDLAAARE 425 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 5789999999988888877776554444
No 306
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=68.56 E-value=23 Score=27.60 Aligned_cols=32 Identities=38% Similarity=0.595 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
|..|+.++++.+.....+|..++.|...+-|+
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~ 34 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEA 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888888888877776
No 307
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=68.53 E-value=14 Score=37.66 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
+|..-=-+||+++-.+++.||++|+.+..++++++.+....++
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~ 405 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYRE 405 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556666666666666666666555555554444443
No 308
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=68.50 E-value=44 Score=31.18 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLK-------AEKEKIEQQLKAM 175 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk-------~ekekLe~qlk~~ 175 (236)
..+-.-|.+++.++..|..+...|..+|+.-+.|....+.....|+ .|-|+||.+|+.+
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3344445555555556666666666666666665555555555553 4777777777763
No 309
>PLN02678 seryl-tRNA synthetase
Probab=68.45 E-value=32 Score=34.08 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELK---AEKNELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk---~EknELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
++|+.+++.|+.+...+..+|..++ .+..+|.++-..|+.++..++.+++.+..
T Consensus 43 r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~ 99 (448)
T PLN02678 43 RQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKA 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554433 23345666777788888888887777543
No 310
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=68.42 E-value=20 Score=28.38 Aligned_cols=50 Identities=24% Similarity=0.368 Sum_probs=25.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026599 110 TDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRL 161 (236)
Q Consensus 110 ~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~L 161 (236)
--|++.|-.. |=..-+.++.+|+.++..|..++..|+.+.+--|.|+..|
T Consensus 33 E~KV~~LKks--Ye~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 33 ETKVKALKKS--YEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666432 3334445555555555555555555555544444444433
No 311
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.36 E-value=59 Score=35.20 Aligned_cols=72 Identities=28% Similarity=0.300 Sum_probs=44.9
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026599 109 KTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEK-------IKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQPS 180 (236)
Q Consensus 109 K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~ee-------ik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p~ 180 (236)
+.+---+=..+-+|+.+|...+++++.....++.+ .++|+.|..+|.+|.+.+-.++..|..|+.-+..+=|
T Consensus 638 ~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 638 KTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444455667788888888888888765555444 4555555555555555666666666666666555444
No 312
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.23 E-value=65 Score=28.38 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 147 LKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 147 Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
...-..+++.+...|..|+..|++.|+.
T Consensus 162 e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 162 EKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344457788888888888888888874
No 313
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=68.19 E-value=15 Score=36.41 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026599 113 AAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRL 161 (236)
Q Consensus 113 AsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~L 161 (236)
..||.+... +.+|+.+.+++......+..++++++.+..++..+...|
T Consensus 147 ~~lLD~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L 194 (563)
T TIGR00634 147 RQLLDTFAG-ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFL 194 (563)
T ss_pred HHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344544444 344555544444444444444444444434433333333
No 314
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=68.14 E-value=10 Score=35.12 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCC
Q 026599 159 QRLKAEKEKIEQQLKAMSTQP 179 (236)
Q Consensus 159 ~~Lk~ekekLe~qlk~~~~~p 179 (236)
..++.|+++++.+|+.+..+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ 43 (364)
T TIGR01242 23 IRLERELERLRSEIERLRSPP 43 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 344555555555566555544
No 315
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=67.96 E-value=27 Score=25.81 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026599 153 ELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 153 ELrdEk~~Lk~ekekLe~qlk 173 (236)
+-...|..|..++++|+.+++
T Consensus 36 eaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 36 EAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554
No 316
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=67.74 E-value=35 Score=34.20 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
|++.+..+++++.....+.++..++..+..+++-....|.++...|+.+++.
T Consensus 441 L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 441 LQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555666666677777777777777777777777777776
No 317
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=67.60 E-value=19 Score=30.31 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
++|..+...+.....|+.+++.-..|...||.+...+.....+|+
T Consensus 84 e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 84 EQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333344444444444444444444444444444443
No 318
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=67.50 E-value=13 Score=33.35 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=18.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 135 DSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 135 ~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
++|+.|-.+|..+..|++.|++|+..|+.-.+
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae 156 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAE 156 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555655566666666666666665555333
No 319
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=67.07 E-value=37 Score=24.93 Aligned_cols=44 Identities=11% Similarity=0.348 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
++++++.+++.....+++.+..|+ .-...+..++..+..+|..+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE-------~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLE-------KRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444433333 33334444455555555543
No 320
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=66.98 E-value=50 Score=29.00 Aligned_cols=52 Identities=23% Similarity=0.364 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
.+..|+.++..++.....|...+..|+....+++.....|.+.....+.+.+
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555555555554444444433
No 321
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=66.92 E-value=28 Score=32.82 Aligned_cols=70 Identities=19% Similarity=0.378 Sum_probs=35.2
Q ss_pred hhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 026599 100 SILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEK-------NELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 100 slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ek-------nELrdEk~~Lk~ekekLe~ql 172 (236)
+|| -+.+--.+|.+.+-. |.-|+..+..|++.+..|+.++++...+. ..|+.|...|+.++......|
T Consensus 96 AMv-~naQLDNek~~l~yq----vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 96 AMV-SNAQLDNEKSALMYQ----VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHH-HHhhhchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 333234677766532 33445566666666666655544333333 344555555555555555555
Q ss_pred HH
Q 026599 173 KA 174 (236)
Q Consensus 173 k~ 174 (236)
+.
T Consensus 171 ~k 172 (302)
T PF09738_consen 171 EK 172 (302)
T ss_pred HH
Confidence 44
No 322
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=66.72 E-value=41 Score=36.55 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=2.6
Q ss_pred hHHHHhh
Q 026599 94 KFVELAS 100 (236)
Q Consensus 94 rF~eL~s 100 (236)
++..+..
T Consensus 759 ~~~~~~~ 765 (1163)
T COG1196 759 RLEELEE 765 (1163)
T ss_pred HHHHHHH
Confidence 3333333
No 323
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=66.68 E-value=24 Score=27.33 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
+.+|+++++ .++..|++....++.+++.++.+.+.++
T Consensus 75 ~~eA~~~l~---~r~~~l~~~~~~l~~~~~~~~~~~~~~~ 111 (120)
T PF02996_consen 75 LEEAIEFLK---KRIKELEEQLEKLEKELAELQAQIEQLE 111 (120)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577877765 3444455544444444444444444433
No 324
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.68 E-value=27 Score=35.06 Aligned_cols=50 Identities=30% Similarity=0.395 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
-|+.+++.|+.+|..|.+.+..|+.-.++|-.|.+++..+++-+-.||..
T Consensus 301 nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~ 350 (502)
T KOG0982|consen 301 NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLIC 350 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 45567888999999999999999999999988888777777766665554
No 325
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=66.63 E-value=21 Score=35.63 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026599 157 EKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 157 Ek~~Lk~ekekLe~qlk~~ 175 (236)
|...|+.+++--+.|++.+
T Consensus 247 el~Sle~q~~~s~~qldkL 265 (447)
T KOG2751|consen 247 ELDSLEAQIEYSQAQLDKL 265 (447)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5556777777777777763
No 326
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=66.55 E-value=67 Score=34.98 Aligned_cols=10 Identities=50% Similarity=0.468 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 026599 157 EKQRLKAEKE 166 (236)
Q Consensus 157 Ek~~Lk~eke 166 (236)
+...++.+++
T Consensus 899 ~~~~~~~~~~ 908 (1163)
T COG1196 899 ELAELKEEIE 908 (1163)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 327
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=66.49 E-value=50 Score=25.90 Aligned_cols=29 Identities=38% Similarity=0.536 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 146 ELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 146 ~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
....+...|+.+...|++++.+++..|+.
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666665
No 328
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=66.38 E-value=52 Score=29.92 Aligned_cols=50 Identities=26% Similarity=0.469 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
=.|.+++ ..|+..+..|+.+...+ ......|+.|+..|..++..|+..|+
T Consensus 204 P~L~~~~---~rL~~~l~~le~~~~~~-------~~~l~~l~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 204 PSLSECL---ERLRESLSSLEDSKSQL-------QQQLESLEKEKEEIEEREKELQELLK 253 (254)
T ss_pred CchhHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555555 44444445554444444 44444555556666666666666654
No 329
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.22 E-value=28 Score=37.56 Aligned_cols=46 Identities=26% Similarity=0.454 Sum_probs=31.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 132 KLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 132 ~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
.+....+.-..+|++|.++..|+++-+..|--|+-.|++||+.+..
T Consensus 476 ~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 476 EVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 3333333444556777777778877778888888888888887644
No 330
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=66.20 E-value=28 Score=30.70 Aligned_cols=6 Identities=17% Similarity=0.157 Sum_probs=3.0
Q ss_pred CCcccc
Q 026599 32 GFTWTV 37 (236)
Q Consensus 32 ~f~w~~ 37 (236)
+.||..
T Consensus 75 ~~FyC~ 80 (176)
T PF12999_consen 75 GKFYCE 80 (176)
T ss_pred ceEeec
Confidence 455543
No 331
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=66.13 E-value=42 Score=28.29 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 113 AAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 113 AsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
.-+|...=+-+..+..+...++.+....++.+..++.+...+..+...++.+..+|..+..
T Consensus 76 v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 76 VQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555555555555555555555555555555555555555555555555555444433
No 332
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=66.12 E-value=16 Score=33.85 Aligned_cols=33 Identities=33% Similarity=0.428 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEK 158 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk 158 (236)
|+.++++|++.+..++.+.+.++.|..+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEI 36 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444444444444433
No 333
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=65.93 E-value=36 Score=27.68 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKD 135 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~ 135 (236)
|...=.-+.+++.++..|+.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKA 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444443
No 334
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=65.86 E-value=46 Score=24.31 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=25.3
Q ss_pred HHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHH
Q 026599 88 RDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRS 128 (236)
Q Consensus 88 RdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~ 128 (236)
-+.||+++.++++-- |.. ..++..+| -|+.+-.++..
T Consensus 27 a~~i~~~i~~~~~~~-~~~--~~~~~~vl-aaLnla~e~~~ 63 (89)
T PF05164_consen 27 AELINEKINEIKKKY-PKL--SPERLAVL-AALNLADELLK 63 (89)
T ss_dssp HHHHHHHHHHHCTTC-CTS--SHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCC--CHHHHHHH-HHHHHHHHHHH
Confidence 468999999999987 643 56677666 45555554433
No 335
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=65.72 E-value=28 Score=36.59 Aligned_cols=89 Identities=24% Similarity=0.343 Sum_probs=55.4
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-------HHHHHHHHHHH
Q 026599 87 RRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELK-------AEKNELRDEKQ 159 (236)
Q Consensus 87 RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk-------~EknELrdEk~ 159 (236)
|-..++.++.+|..=|---+..-....+=...-...+.+|+...+.|+.+...|.++++++| ++++||.+||.
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi 107 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI 107 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 55677788888877661000000111222333344556677777777777777777777654 57788888999
Q ss_pred HHHHHHHHHHH---HHHHh
Q 026599 160 RLKAEKEKIEQ---QLKAM 175 (236)
Q Consensus 160 ~Lk~ekekLe~---qlk~~ 175 (236)
.|..++.-|.+ ++..|
T Consensus 108 slQKqvs~Lk~sQvefE~~ 126 (717)
T PF09730_consen 108 SLQKQVSVLKQSQVEFEGL 126 (717)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 99988887753 55553
No 336
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.72 E-value=29 Score=35.13 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=5.7
Q ss_pred HHHHhHHHHhhhc
Q 026599 90 RLNDKFVELASIL 102 (236)
Q Consensus 90 kLNerF~eL~slL 102 (236)
++-+.+.+|..-|
T Consensus 402 ~~e~el~~l~~~l 414 (650)
T TIGR03185 402 ELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 337
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=65.67 E-value=27 Score=27.17 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=25.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 109 KTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 109 K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
..+.+-|..+--+.+..|..+++.++.....|..+++++..+.++++
T Consensus 51 ~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 51 LVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555566666666665555555555555544444443
No 338
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=65.63 E-value=55 Score=32.54 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=53.0
Q ss_pred HHHHHhHHHHhhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASILE-PGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 89 dkLNerF~eL~slL~-P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
..||+-|..|..+-. |. ...-+..+|..|-.+++.++.-...|......+.++|+....+.|.|-++...|-.+|.+
T Consensus 108 ~~l~~ff~a~~~ls~~P~--~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 185 (547)
T PRK08147 108 TTMQDFFTSLQTLVSNAE--DPAARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITR 185 (547)
T ss_pred HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777652 33 245688899999888888888777777766677777777777777766666555555543
No 339
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=65.47 E-value=42 Score=25.25 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026599 155 RDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 155 rdEk~~Lk~ekekLe~qlk~ 174 (236)
+......+.+.+||..+++.
T Consensus 63 ~~~~~~~k~~~~KL~~df~~ 82 (102)
T PF14523_consen 63 RSNDRQQKLQREKLSRDFKE 82 (102)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 33444555666666666654
No 340
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=65.08 E-value=7.5 Score=30.57 Aligned_cols=43 Identities=30% Similarity=0.452 Sum_probs=13.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
+..|..++..|..++.+|+.+..+|+.+...++.....|+..|
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 3444444444555555555555555544444444444444443
No 341
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=65.03 E-value=31 Score=36.78 Aligned_cols=40 Identities=20% Similarity=0.533 Sum_probs=31.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 136 SNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 136 ~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
..+.|.++...+++...+++.++.+|..++|+|-++++.+
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3446777788888888888888888888888888877775
No 342
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=64.96 E-value=71 Score=28.64 Aligned_cols=82 Identities=16% Similarity=0.278 Sum_probs=44.7
Q ss_pred HHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 91 LNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSN----SSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 91 LNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n----~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
|-.+|..++.++ =|. |.+-.+.-..+-+|+..|+.+-++...-- ..|..-..++.........|...|++.+.
T Consensus 95 l~~ryek~K~vi-~~~--k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lk 171 (207)
T PF05010_consen 95 LHKRYEKQKEVI-EGY--KKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLK 171 (207)
T ss_pred HHHHHHHHHHHH-HHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344566666666 343 44444444444466665555544444322 22333333444444455667778888888
Q ss_pred HHHHHHHHh
Q 026599 167 KIEQQLKAM 175 (236)
Q Consensus 167 kLe~qlk~~ 175 (236)
+.+-++.++
T Consensus 172 k~e~~~~SL 180 (207)
T PF05010_consen 172 KEEMKVQSL 180 (207)
T ss_pred HHHHHHHHH
Confidence 887777764
No 343
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.84 E-value=39 Score=33.63 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQ-------RLKAEKEKIEQQLKA 174 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~-------~Lk~ekekLe~qlk~ 174 (236)
|.....++..|+.....|..++...+.+.+.|++.-. .|+.++.++..+|.+
T Consensus 297 L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 297 LEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 3333334444444555555555555555555554333 344444444444444
No 344
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.76 E-value=39 Score=35.32 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=25.0
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhcCCCC-CCCCchhhhHHHHHHHHHHHHHH
Q 026599 79 SKACREKLRRDRLNDKFVELASILEPGR-PPKTDKAAILIDAVRMVTQLRSE 129 (236)
Q Consensus 79 ~ka~rER~RRdkLNerF~eL~slL~P~~-~~K~DKAsIL~dAI~ylkqLr~q 129 (236)
-++++|-+|=-+ ..--..+|+|+. ....+|.....|-|+.+++|.+.
T Consensus 356 ~k~i~~t~~~~r----~~~~ak~ld~sK~~~~~~~~d~t~d~id~i~~l~k~ 403 (758)
T COG4694 356 LKNIIETLRSKR----LANQAKMLDKSKEMSRNFKLDSTKDEIDAIKDLIKK 403 (758)
T ss_pred hhhHHHHHHHHH----HHHHHHhhccchhhccccccccchhHHHHHHHHHHH
Confidence 344555554322 223345666664 12566666666666666666554
No 345
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=64.74 E-value=53 Score=31.22 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIK----ELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik----~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+-|.++-...++|+.++++|+.+.+.+.++.. .--+....|+++++.+++.++.|..-|+.
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiRe 116 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRE 116 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666677777777777766555544322 22233456777888777777777665554
No 346
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=64.65 E-value=40 Score=25.61 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=14.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
...+..++..++.+...|..|.+.|+-|.+.|.
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444444444444444444444443
No 347
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=64.55 E-value=54 Score=33.54 Aligned_cols=76 Identities=16% Similarity=0.273 Sum_probs=48.7
Q ss_pred HHHHHhHHHHhhhc-CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASIL-EPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 89 dkLNerF~eL~slL-~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
..|++-|..|..+- +|. ...-+..+|..|-.+...++.-...|+.....+..+|+..-.+.|.|-++...|-.+|.
T Consensus 112 ~~l~~ff~al~~ls~~P~--~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~ 188 (613)
T PRK08471 112 KDLQDYFNAWNDFASNPK--DSAQKQALAQKTETLTNNIKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIK 188 (613)
T ss_pred HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666665 243 24557788888877777777777777766666666666666666666555555554443
No 348
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=64.46 E-value=48 Score=27.87 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
....-|+.||..+.+| ..+.|++-...|..-.+|-++|.....++++.-
T Consensus 6 k~l~niR~lra~~re~--~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er 54 (135)
T PRK10947 6 KILNNIRTLRAQAREC--TLETLEEMLEKLEVVVNERREEESAAAAEVEER 54 (135)
T ss_pred HHHHhHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677888887776 445555555555555566555555444444433
No 349
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=64.45 E-value=78 Score=25.90 Aligned_cols=48 Identities=13% Similarity=0.255 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 127 RSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 127 r~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
...+..+=.....|+.+.+.|......|+.+...+....++....||.
T Consensus 39 n~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKE 86 (121)
T PF06320_consen 39 NSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKE 86 (121)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333444444444444444444444444444444444444
No 350
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=64.34 E-value=54 Score=27.97 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 140 LQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 140 L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
|+.+-.+|.++...|++|++.+.-|.+-+...+++
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444
No 351
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.11 E-value=35 Score=37.57 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCC-CCCCCchhhhHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 83 REKLRRDRLNDKFVELASILEPG-RPPKTDKAAILIDAVRMVT----QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 83 rER~RRdkLNerF~eL~slL~P~-~~~K~DKAsIL~dAI~ylk----qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
.=+.+|++|++.+.+|.+ = -+ ...-..|.+.|..-|.|.+ +++..+..++.+...++.++.+...+.+++..+
T Consensus 656 ~L~~~k~rl~eel~ei~~-~-~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~ 733 (1141)
T KOG0018|consen 656 QLKEKKERLLEELKEIQK-R-RKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRK 733 (1141)
T ss_pred HHHHHHHHHHHHHHHHHH-h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHH
Confidence 346699999999998877 2 11 1123466777777777653 344444455555555556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026599 158 KQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 158 k~~Lk~ekekLe~qlk~~ 175 (236)
......++..|+.++..+
T Consensus 734 l~~~e~~~~~L~~~~n~v 751 (1141)
T KOG0018|consen 734 LQNREGEMKELEERMNKV 751 (1141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666665553
No 352
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=63.98 E-value=42 Score=31.78 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKL 133 (236)
Q Consensus 119 AI~ylkqLr~qv~~L 133 (236)
|++|=..|-+=.++|
T Consensus 50 A~~fA~~ld~~~~kl 64 (301)
T PF06120_consen 50 AIEFADSLDELKEKL 64 (301)
T ss_pred HHHHHHhhHHHHHHH
Confidence 333333333333333
No 353
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=63.69 E-value=29 Score=28.08 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
.+|.+|..+.+.|+.+...|+..+..|.....+++.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~ 41 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDT 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777776666666666543
No 354
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.08 E-value=30 Score=37.81 Aligned_cols=49 Identities=33% Similarity=0.494 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNS--------------SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~--------------~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
+++|..+..+|++..- +|..+...++.|.+||+.-+..|+.+++.+|..
T Consensus 370 fkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~ 432 (1243)
T KOG0971|consen 370 FKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAEST 432 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777765433 233333344445555555555555444444443
No 355
>PRK01156 chromosome segregation protein; Provisional
Probab=63.03 E-value=91 Score=32.46 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEK 158 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk 158 (236)
-+.+.-..+..|+.+...|+.....|..++.++....+.++.+.
T Consensus 675 ~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel 718 (895)
T PRK01156 675 RINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRI 718 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444444555555555555555555555555544444444333
No 356
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=62.99 E-value=48 Score=25.00 Aligned_cols=47 Identities=21% Similarity=0.406 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKA------EKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~------EknELrdEk~~Lk~ekekLe~ql 172 (236)
++-.+.+|+++.+.+...|+.+.+ ....++..|..||.++-++|.|+
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~~cD~L~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIATGCDALRIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 444555555555555555444322 12234556667777787887775
No 357
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=62.88 E-value=47 Score=32.18 Aligned_cols=56 Identities=23% Similarity=0.396 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQ---EK-IKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~---ee-ik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+.-+.+|+.+-.++.++...+. ++ ..+|+.+..+|+++...|+.+...++.++...
T Consensus 43 ~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 43 LSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666655555544321 12 56777777888888888888888888888873
No 358
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=62.87 E-value=75 Score=30.83 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=10.2
Q ss_pred CCcccccccCCCc
Q 026599 210 PGVAMWQFMPPAA 222 (236)
Q Consensus 210 pg~~mwq~~pp~~ 222 (236)
-|+-=||..||+-
T Consensus 194 ~GvHrvqrvs~~~ 206 (367)
T PRK00578 194 TGVHRLVRISPFD 206 (367)
T ss_pred cceEEEEecCCCC
Confidence 5788899988864
No 359
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=62.64 E-value=16 Score=30.89 Aligned_cols=17 Identities=29% Similarity=0.808 Sum_probs=0.0
Q ss_pred CccccccCCC----Ccccccc
Q 026599 201 NKLMPFISYP----GVAMWQF 217 (236)
Q Consensus 201 ~k~~p~~~~p----g~~mwq~ 217 (236)
+.++.|+..| |...|.|
T Consensus 137 ~~lLSfP~~~~gaVsi~~W~~ 157 (161)
T PF04420_consen 137 EWLLSFPTAPLGAVSITVWLF 157 (161)
T ss_dssp ---------------------
T ss_pred HHheecccCCCCceehHHHHH
Confidence 4444444333 4478876
No 360
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.46 E-value=64 Score=35.01 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=32.6
Q ss_pred hhhHHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 113 AAILIDAVR----MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 113 AsIL~dAI~----ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
.+-|..+.+ ..+.|+.++.+|+++.++-.++|..+.....|||++...+.
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~ 583 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQ 583 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 444544433 34567778888888777766677777777777777655443
No 361
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=62.43 E-value=91 Score=30.25 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=37.4
Q ss_pred HHHHHhHHHHhhhc-CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----HHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASIL-EPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAE-----KNELRDEKQRLK 162 (236)
Q Consensus 89 dkLNerF~eL~slL-~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~E-----knELrdEk~~Lk 162 (236)
+.+.++|.+|...+ +|+.-...+|+.-+..-+..++.+.....++++....+.+-..-++.+ +.++.+|...|.
T Consensus 26 ~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D~e~~~~a~~e~~~l~ 105 (364)
T TIGR00020 26 EKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVEEDDEETFNELDAELKALE 105 (364)
T ss_pred HHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 45566777777655 243212344444444444444444444444443333322211111111 223456666777
Q ss_pred HHHHHHH
Q 026599 163 AEKEKIE 169 (236)
Q Consensus 163 ~ekekLe 169 (236)
.++++++
T Consensus 106 ~~l~~le 112 (364)
T TIGR00020 106 KKLAELE 112 (364)
T ss_pred HHHHHHH
Confidence 7777776
No 362
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=62.43 E-value=66 Score=24.34 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026599 124 TQLRSEAQKLKDSN----SSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQP 179 (236)
Q Consensus 124 kqLr~qv~~Lk~~n----~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p 179 (236)
++|....+.|.+.. ...++....|...-...+.++..|..++..|..++..|+..+
T Consensus 6 ~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 6 KQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555433 334444556666666667788888888888888888876543
No 363
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=62.35 E-value=35 Score=26.53 Aligned_cols=47 Identities=15% Similarity=0.345 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
+....-.-...|+...+.+..+++.+.....++..+...|+.++.++
T Consensus 57 v~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 57 VKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666666666666666666666655554
No 364
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=62.25 E-value=17 Score=27.05 Aligned_cols=29 Identities=24% Similarity=0.475 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 141 QEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 141 ~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
.+|+..||..+.||.+.+..|+.|...|.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666554443
No 365
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=62.10 E-value=19 Score=35.17 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
.|+-.-.||.+..+|+++|+.|..|+..|+
T Consensus 30 ~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 30 SIDENFALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred chhhhhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445555677777777777777766666663
No 366
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=62.02 E-value=45 Score=29.59 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
..++-+.+..+...|......|..+...|...+..|.+.+..|+.|..-++
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e 204 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLE 204 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666666666666666666666666666666665544
No 367
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=62.02 E-value=19 Score=28.15 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKE 146 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~ 146 (236)
+.+|...+++++.+|..|.+++..
T Consensus 82 ~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 82 REQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 368
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=61.92 E-value=16 Score=28.05 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026599 145 KELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 145 k~Lk~EknELrdEk~~Lk~eke 166 (236)
+.|+.++..+++++..+++++.
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 80 EALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444433
No 369
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.91 E-value=32 Score=31.36 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIK------ELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik------~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
|.+|+.|++.++.+.+.|....+ .-...+.+|+.-..+.+-.+.+||.-|+.+.
T Consensus 131 Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~ 190 (233)
T PF04065_consen 131 IDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLD 190 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777776666654321 2333445677778889999999999999874
No 370
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=61.72 E-value=80 Score=29.55 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=41.8
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 103 EPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEK----IKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 103 ~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~ee----ik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+|+.-....|.++|+. ++..+...++++-..++++... +.+|....++|+..+..|....+++...++.+
T Consensus 62 dp~~~~~~~~~~~l~k---lf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L 135 (333)
T PF05816_consen 62 DPSELKDEKKKGFLGK---LFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQEL 135 (333)
T ss_pred ChhhhhhhhhhhHHHH---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3654222456688877 4444445555555544444444 35677777778777777777777766666553
No 371
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=61.71 E-value=57 Score=27.41 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
....-|+.||..+.+| ..+.|++-...|..-.+|-|+|
T Consensus 6 k~l~n~R~lra~~re~--~~e~Lee~~ekl~~vv~er~~~ 43 (134)
T PRK10328 6 QSLNNIRTLRAMAREF--SIDVLEEMLEKFRVVTKERREE 43 (134)
T ss_pred HHHhhHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677888877776 3444544444455545554443
No 372
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=61.65 E-value=68 Score=24.94 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHh
Q 026599 122 MVTQLRSEAQKLKDS 136 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~ 136 (236)
++++|...+..|+..
T Consensus 9 al~rL~~aid~LE~~ 23 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKA 23 (89)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555543
No 373
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=61.61 E-value=45 Score=36.76 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
.+|.+++..+..|.+...+|++++.+.......+.....+|+.++.-|+.|..-|..||+
T Consensus 495 k~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~ 554 (1195)
T KOG4643|consen 495 KSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQ 554 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467777777777777777777666555444444444444444443333333333333333
No 374
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=61.58 E-value=93 Score=31.83 Aligned_cols=87 Identities=11% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHH-------HHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHH
Q 026599 85 KLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAV-------RMVTQLRSEAQKLKDSNSSLQEK-------IKELKAE 150 (236)
Q Consensus 85 R~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI-------~ylkqLr~qv~~Lk~~n~~L~ee-------ik~Lk~E 150 (236)
+.+|.....++..|+..+ .......++.+++ ..|.+|+.+..+++.+...|..+ +..++.+
T Consensus 250 ~~~~~~a~a~~~~l~~~l-----~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~q 324 (754)
T TIGR01005 250 RANRAAAEGTADSVKKAL-----QNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSS 324 (754)
T ss_pred HHHHHHHHHHHHHHHHHH-----hcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q ss_pred HHHHHHHHH----------------------HHHHHHHHHHHHHHHhh
Q 026599 151 KNELRDEKQ----------------------RLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 151 knELrdEk~----------------------~Lk~ekekLe~qlk~~~ 176 (236)
.++|+.+.. .|+.++.+++.++..++
T Consensus 325 i~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~ 372 (754)
T TIGR01005 325 LADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAG 372 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
No 375
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=61.38 E-value=35 Score=27.60 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAE 164 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~e 164 (236)
+.+|+.+++ .+++.|+.....|+..+..+..+.+++++....+..+
T Consensus 92 ~~eA~~~l~---~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 92 LDEAIEILD---KRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777655 4555566666666666666666666665555554443
No 376
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.13 E-value=46 Score=36.54 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=8.2
Q ss_pred HHHHHHhHHHHhhhc
Q 026599 88 RDRLNDKFVELASIL 102 (236)
Q Consensus 88 RdkLNerF~eL~slL 102 (236)
+++|.+++..+-+.|
T Consensus 419 kE~Lsr~~d~aEs~i 433 (1243)
T KOG0971|consen 419 KERLSRELDQAESTI 433 (1243)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666655555544
No 377
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.07 E-value=56 Score=26.99 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKL 133 (236)
Q Consensus 119 AI~ylkqLr~qv~~L 133 (236)
+..++...+.+.++|
T Consensus 122 ~~~~l~~k~~~~~kl 136 (218)
T cd07596 122 LKKDLASKKAQLEKL 136 (218)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444333333
No 378
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=61.06 E-value=89 Score=25.42 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=29.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
...|++....-+..++.+.+|.+-|.=.|+.|-..++.|+.+|...
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444556666666666667777888888888888743
No 379
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.87 E-value=45 Score=36.71 Aligned_cols=51 Identities=27% Similarity=0.383 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR-------DEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr-------dEk~~Lk~ekekLe~q 171 (236)
+....|+.++..++.+.....+++++|....+|++ .++..+|.+++.++..
T Consensus 411 e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 411 EQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDK 468 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555556666666555443 3455556666655443
No 380
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=60.82 E-value=46 Score=26.28 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQR 160 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~ 160 (236)
-|.+|..+|+.|+....++..+++.++.....-.+|-.+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~R 63 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANR 63 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777776666666555444444333
No 381
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=60.81 E-value=23 Score=27.90 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 026599 157 EKQRLKAEKEKIEQ 170 (236)
Q Consensus 157 Ek~~Lk~ekekLe~ 170 (236)
||.+|+.|..+++.
T Consensus 52 EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 52 ENIRLREELRRLQS 65 (86)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 382
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=60.76 E-value=85 Score=32.36 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=54.0
Q ss_pred HHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHH----HHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASILEPGRPPKTDKAAILIDAVR----MVTQLRSEAQKLKDSNSSLQ-------EKIKELKAEKNELRDE 157 (236)
Q Consensus 89 dkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~----ylkqLr~qv~~Lk~~n~~L~-------eeik~Lk~EknELrdE 157 (236)
+-.|.+...+...| ..|++-.+.+.+-+. .|-+|+.++..+.-+++.+. ..-++++.|..|+.|.
T Consensus 208 rdtN~q~~s~~eel----~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 208 RDTNTQARSGQEEL----QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35788888888888 456666665544332 22233333333333333322 2235788999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026599 158 KQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 158 k~~Lk~ekekLe~qlk~~ 175 (236)
...+-+....-|.+|+.+
T Consensus 284 yAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 284 YAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999975
No 383
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=60.75 E-value=49 Score=36.79 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 026599 113 AAILIDAVRMVTQLRSEAQKL 133 (236)
Q Consensus 113 AsIL~dAI~ylkqLr~qv~~L 133 (236)
..-|.++++-+.+++.+++.|
T Consensus 222 i~~l~e~~~~~~~~~~~le~l 242 (1353)
T TIGR02680 222 LTDVADALEQLDEYRDELERL 242 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333
No 384
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.75 E-value=75 Score=24.47 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
..|.+++.+|+....-=+.-|.+|..-.-|.+-...++..+...|-+.|+.+
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666677665543333456666666666666666666666777777765
No 385
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=60.72 E-value=80 Score=28.95 Aligned_cols=63 Identities=19% Similarity=0.334 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL-------RDEKQRLKAEKEKIEQQLKAMSTQPSFLT 183 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL-------rdEk~~Lk~ekekLe~qlk~~~~~p~~~p 183 (236)
+-|.+|+.+.++.+.+.+.+-.|.+.-+.++.+| .++.-.++.++.+|+.-+.++++.=|++.
T Consensus 46 ~dve~l~~e~E~~~k~l~de~~E~r~~~~tke~lk~l~~~~~~~f~a~~edi~rlE~~i~~lgaRwGils 115 (231)
T COG5493 46 QDVEELRKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQEEEFRATKEDIKRLETIITGLGARWGILS 115 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5666777777777666664333433333333333 35677888999999988888766555544
No 386
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=60.60 E-value=63 Score=28.72 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhHHHHhhhc
Q 026599 83 REKLRRDRLNDKFVELASIL 102 (236)
Q Consensus 83 rER~RRdkLNerF~eL~slL 102 (236)
.|-+|| ++.+..|.+.+
T Consensus 52 ~E~k~R---~E~~~~lq~~~ 68 (247)
T PF06705_consen 52 AEVKRR---VESNKKLQSKF 68 (247)
T ss_pred HHHHHH---HHHHHHHHHHH
Confidence 466666 33344444444
No 387
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=60.55 E-value=16 Score=35.59 Aligned_cols=29 Identities=38% Similarity=0.470 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 137 NSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 137 n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
+..|++|...||+|.++|+.|..+|++|.
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444433
No 388
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=60.50 E-value=21 Score=37.27 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=7.1
Q ss_pred HHHHHHHhhhhHHHHHHH
Q 026599 129 EAQKLKDSNSSLQEKIKE 146 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~ 146 (236)
+++.|+.+|+.|+.++..
T Consensus 461 eL~qlr~ene~Lq~Kl~~ 478 (697)
T PF09726_consen 461 ELSQLRQENEQLQNKLQN 478 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444443333
No 389
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=60.43 E-value=3.1 Score=33.36 Aligned_cols=43 Identities=28% Similarity=0.435 Sum_probs=1.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 132 KLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 132 ~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+|+.+.-.+..++..|..+.+.|+.|...|+.+...|+.+...
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ----------------------------------------HT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444444445555555555555555555555555555544
No 390
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=60.36 E-value=19 Score=27.65 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~ee 143 (236)
+++|+++++.|+.+...++.+
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~ 92 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDE 92 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333
No 391
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=60.24 E-value=35 Score=31.06 Aligned_cols=34 Identities=32% Similarity=0.568 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
..|.+.+..++..+..+......|+.|+..|..+
T Consensus 211 ~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~r 244 (254)
T PF15458_consen 211 ERLRESLSSLEDSKSQLQQQLESLEKEKEEIEER 244 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555554444444443
No 392
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=60.23 E-value=62 Score=33.38 Aligned_cols=77 Identities=16% Similarity=0.298 Sum_probs=52.7
Q ss_pred HHHHhHHHHhhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 90 RLNDKFVELASILE-PGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 90 kLNerF~eL~slL~-P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
.||+-|..|..+-. |. .-.-+..+|+.|-.++.+++.-..+|.+....+..+|+....+.|.|-++...|-.+|.+.
T Consensus 109 ~L~~Ff~alq~la~~P~--~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~~ 186 (651)
T PRK06945 109 AITSFFTGLQNVANNPS--DPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAKA 186 (651)
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677777776662 22 2456778888888888888877777777777777777777777777666666665555443
No 393
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=60.22 E-value=84 Score=27.87 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 026599 160 RLKAEKEKIEQQLKA 174 (236)
Q Consensus 160 ~Lk~ekekLe~qlk~ 174 (236)
.|..++++|+..|..
T Consensus 201 ~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 201 KLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555544443
No 394
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.93 E-value=32 Score=37.62 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026599 82 CREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRL 161 (236)
Q Consensus 82 ~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~L 161 (236)
.....++..+=+.+..|++.+ -. +. .-++.|+++++++..+++.++.++..++.+..++..+....
T Consensus 625 ~~l~~~~~~~ee~~~~~~~~~-~~----------~~---~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~ 690 (1072)
T KOG0979|consen 625 PVLEELDNRIEEEIQKLKAEI-DI----------RS---STLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSY 690 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-hh----------hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345556666677777777777 11 11 24567778888888888888888888888888887777777
Q ss_pred HHHHHHHHHHHHHh
Q 026599 162 KAEKEKIEQQLKAM 175 (236)
Q Consensus 162 k~ekekLe~qlk~~ 175 (236)
+..++++|.++..|
T Consensus 691 ~~r~~~ie~~~~~l 704 (1072)
T KOG0979|consen 691 QQRKERIENLVVDL 704 (1072)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777765544
No 395
>PRK10698 phage shock protein PspA; Provisional
Probab=59.90 E-value=74 Score=28.35 Aligned_cols=55 Identities=16% Similarity=0.287 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
...+..|+.+.+..+.....|...+..|+....+++..+..|.+....-+.+.+.
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~ 152 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDV 152 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666666666666666666555555544444443
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.88 E-value=62 Score=33.92 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHH
Q 026599 112 KAAILIDAVRMVT 124 (236)
Q Consensus 112 KAsIL~dAI~ylk 124 (236)
--.+|.+|++.++
T Consensus 537 ~l~lL~~a~~vlr 549 (717)
T PF10168_consen 537 CLELLSQATKVLR 549 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 3457777776554
No 397
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=59.81 E-value=42 Score=24.68 Aligned_cols=20 Identities=5% Similarity=0.280 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhhhHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQE 142 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~e 142 (236)
|.+++.++..+++....|+.
T Consensus 8 l~~ie~~l~~~~~~i~~lE~ 27 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEK 27 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 398
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.74 E-value=48 Score=29.91 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
|++.++..+..++..++...+|+.+.|-|+++...|+.+..+++
T Consensus 100 l~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 100 LGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444445666666666665555555555544
No 399
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=59.62 E-value=62 Score=29.87 Aligned_cols=41 Identities=32% Similarity=0.396 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQP 179 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p 179 (236)
..+++|..|..+.++|.++...|++++..-+.||+.|+...
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~ 217 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSS 217 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55666777777777777777777777777777777776543
No 400
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=59.56 E-value=39 Score=34.30 Aligned_cols=26 Identities=19% Similarity=0.540 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026599 154 LRDEKQRLKAEKEKIEQQLKAMSTQP 179 (236)
Q Consensus 154 LrdEk~~Lk~ekekLe~qlk~~~~~p 179 (236)
.+.-+..|.++++.++++++++...|
T Consensus 235 i~~~~~~l~~~~~~~~~~~~~lk~ap 260 (555)
T TIGR03545 235 IKSAKNDLQNDKKQLKADLAELKKAP 260 (555)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 44444556666677777777665544
No 401
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=59.40 E-value=48 Score=26.11 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=33.3
Q ss_pred hHHHHhhhcCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 94 KFVELASILEPGRP--PKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 94 rF~eL~slL~P~~~--~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
-+.+|..+- |+.. .-.+.+-|..+--+.+..|..+++.++.....|.....+|.....+++.
T Consensus 39 v~~eL~~l~-~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 39 ALEELERLP-DDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHcCC-CcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444 5431 0245555666666666666666666666665555555555544444443
No 402
>PRK04654 sec-independent translocase; Provisional
Probab=59.31 E-value=72 Score=29.09 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026599 120 VRMVTQLRSEAQKLKDS 136 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~ 136 (236)
-++|+++|..+...+++
T Consensus 33 Gk~irk~R~~~~~vk~E 49 (214)
T PRK04654 33 GLWVRRARMQWDSVKQE 49 (214)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 403
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=59.25 E-value=41 Score=27.93 Aligned_cols=48 Identities=29% Similarity=0.313 Sum_probs=23.2
Q ss_pred CchhhhHHHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 110 TDKAAILIDAVR---MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 110 ~DKAsIL~dAI~---ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
|||-.|...-.+ -|..|-.++..|++...+|-+|...|+.|-..||+.
T Consensus 1 mdKkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 1 MDKKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 466666543332 233444455555555555555555554444444443
No 404
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=59.17 E-value=36 Score=39.31 Aligned_cols=50 Identities=34% Similarity=0.450 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
.+|+.++++|+.+...|+.++++|+.+..+...|+..|+.+.+++.++.+
T Consensus 1246 qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q 1295 (1822)
T KOG4674|consen 1246 QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQ 1295 (1822)
T ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444433
No 405
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=59.16 E-value=1.8e+02 Score=28.26 Aligned_cols=84 Identities=19% Similarity=0.365 Sum_probs=41.5
Q ss_pred HHHHHhHHHHhhhc-CCCCCCCCchhh-------hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASIL-EPGRPPKTDKAA-------ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQR 160 (236)
Q Consensus 89 dkLNerF~eL~slL-~P~~~~K~DKAs-------IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~ 160 (236)
+.+..++.+|...+ +|+.-....|+. -|...+..+.+|....+++++-.+-++++-. ..-..++.+|...
T Consensus 9 e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D--~~~~~~~~~e~~~ 86 (359)
T PRK00591 9 EALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESD--PEMREMAKEELKE 86 (359)
T ss_pred HHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHH
Confidence 45667788888766 243211233333 3333333333333333333322211111100 0112345668888
Q ss_pred HHHHHHHHHHHHHH
Q 026599 161 LKAEKEKIEQQLKA 174 (236)
Q Consensus 161 Lk~ekekLe~qlk~ 174 (236)
|..++++++.+|+.
T Consensus 87 l~~~l~~~e~~l~~ 100 (359)
T PRK00591 87 LEERLEELEEELKI 100 (359)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988886
No 406
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=59.13 E-value=46 Score=25.23 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 146 ELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 146 ~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
+|+.+...|+.|...++..+.+++.
T Consensus 47 eLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 47 ELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 407
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=59.09 E-value=89 Score=31.14 Aligned_cols=85 Identities=20% Similarity=0.396 Sum_probs=51.7
Q ss_pred HHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 86 LRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKD---SNSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 86 ~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~---~n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
.|-+.+++|+..+..+. + |-. .=+.+-++|+.+++.+++.|+. ..+.|++++..++.+..++-.+....+
T Consensus 301 ~~L~ele~RL~~l~~Lk---r--Kyg--~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLK---R--KYG--ASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHHHHH---H--HhC--CCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777776 1 222 2467778888888888888765 355566666666666666555544442
Q ss_pred HH-----HHHHHHHHHHhhC
Q 026599 163 AE-----KEKIEQQLKAMST 177 (236)
Q Consensus 163 ~e-----kekLe~qlk~~~~ 177 (236)
.+ .+.+..+|+.++.
T Consensus 374 ~~~a~~l~~~v~~~l~~L~m 393 (563)
T TIGR00634 374 RKAAERLAKRVEQELKALAM 393 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 22 2334445555444
No 408
>PLN02320 seryl-tRNA synthetase
Probab=58.98 E-value=54 Score=33.13 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKN---------ELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn---------ELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
++.|-+|-.+-.++..+.+.|+.+.+.+..+.. +|.+|-..|+.++..|+.+++.+
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~ 156 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKL 156 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444443322 34444455555555555555554
No 409
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=58.92 E-value=1e+02 Score=27.38 Aligned_cols=50 Identities=20% Similarity=0.410 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
|+.|..++...+...+.....++.|..+.+.|.++....+.....++..|
T Consensus 178 i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 178 IRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444444444444
No 410
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=58.84 E-value=92 Score=30.06 Aligned_cols=80 Identities=24% Similarity=0.333 Sum_probs=50.7
Q ss_pred HHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHH----HHHHHHHHHHHHhhhhHHHH------------------HHHHH
Q 026599 91 LNDKFVELASILEPGRPPKTDKAAILIDAVRMV----TQLRSEAQKLKDSNSSLQEK------------------IKELK 148 (236)
Q Consensus 91 LNerF~eL~slL~P~~~~K~DKAsIL~dAI~yl----kqLr~qv~~Lk~~n~~L~ee------------------ik~Lk 148 (236)
+|-.|.+|..-+ ..|+|-.-||+...+-. ++|...++-|+-..+.|..+ -..|-
T Consensus 14 ~k~e~sAlhqK~----~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLa 89 (389)
T KOG4687|consen 14 LKKEFSALHQKC----GAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLA 89 (389)
T ss_pred HHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHH
Confidence 577788887776 46888777777665543 23444444444444433333 24566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 149 AEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 149 ~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
....+.++||..|+++.+.|-+|+--
T Consensus 90 a~i~etkeeNlkLrTd~eaL~dq~ad 115 (389)
T KOG4687|consen 90 ADIEETKEENLKLRTDREALLDQKAD 115 (389)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence 66777788888888888877776544
No 411
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=58.79 E-value=74 Score=26.04 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 152 NELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 152 nELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
..++.+...+.+++..+=++|+.+.
T Consensus 46 ~~~~~~~~~~~~~~~~~i~~i~~~G 70 (120)
T PF09969_consen 46 NGLEAELEELEARLRELIDEIEELG 70 (120)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444444444444444555543
No 412
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=58.75 E-value=51 Score=36.36 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=44.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 111 DKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 111 DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
-+.+=+..-|.-+-+|..+.+.|....+.|+++|..+...+-+|++.--.|..|.++|+...+.
T Consensus 391 lqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t 454 (1195)
T KOG4643|consen 391 LQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETST 454 (1195)
T ss_pred HhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666667777777777777777777777777777777777777777777776654
No 413
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=58.73 E-value=41 Score=33.00 Aligned_cols=84 Identities=18% Similarity=0.244 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHH----HH
Q 026599 82 CREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQ-LRSEAQKLKDSNSSLQEKIKELKAEKNEL----RD 156 (236)
Q Consensus 82 ~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkq-Lr~qv~~Lk~~n~~L~eeik~Lk~EknEL----rd 156 (236)
......+..+..-+.+|..+- ...+.|.+.++-|+. ++.+++-+.+...+-.....-|....|++ ++
T Consensus 205 ~~~~~~~~~l~~~~~el~eik--------~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~ 276 (395)
T PF10267_consen 205 SVSSQQNLGLQKILEELREIK--------ESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQN 276 (395)
T ss_pred cccccccchHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344455555655556665554 234566666666664 55554444433322222345566666655 45
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026599 157 EKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 157 Ek~~Lk~ekekLe~qlk 173 (236)
|...||++...+|..+.
T Consensus 277 Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 277 EIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 88888888866665443
No 414
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.69 E-value=36 Score=37.43 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=9.8
Q ss_pred HHHHHHHHhHHHHhhhc
Q 026599 86 LRRDRLNDKFVELASIL 102 (236)
Q Consensus 86 ~RRdkLNerF~eL~slL 102 (236)
..|++||+.+..+-.=|
T Consensus 184 qK~ekI~ell~yieerL 200 (1200)
T KOG0964|consen 184 QKREKINELLKYIEERL 200 (1200)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 35677776665554433
No 415
>PRK14127 cell division protein GpsB; Provisional
Probab=58.60 E-value=22 Score=28.98 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKA 149 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~ 149 (236)
|.+.+.-+..|..++.+|++++..|++++.+++.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443444444444444444444444333333
No 416
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=58.58 E-value=76 Score=24.77 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKA---EKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~---EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+.+..|+..++.|++.+..|+.-++.+.. ...+|.+=-..|..=..+||.+||.+
T Consensus 42 ~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 42 DIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 417
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=58.48 E-value=34 Score=34.74 Aligned_cols=51 Identities=27% Similarity=0.393 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEK-IKELKAEKNELRDEKQ---RLKAEKEKIEQQL 172 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~ee-ik~Lk~EknELrdEk~---~Lk~ekekLe~ql 172 (236)
-|.+||.|+.+|..-.+.|... -++|++-..+|.+|+. .|.-|+++|..-+
T Consensus 570 s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~ 624 (627)
T KOG4348|consen 570 SLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAV 624 (627)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHh
Confidence 3567888888887777666432 3556655666666665 5777777776544
No 418
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=58.46 E-value=92 Score=30.29 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=47.7
Q ss_pred HHHHHhHHHHhhhc-CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASIL-EPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 89 dkLNerF~eL~slL-~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
..||+-|..|..+- +|+ ...-+..+|..|-.+...++.-...|...-..+..+|+..-.+.|.+-++...|-.+|
T Consensus 112 ~~l~~ff~a~~~ls~~P~--~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I 187 (431)
T PRK06799 112 SLMDGFFNAFREVAKNPE--QANYYDTLISETGKFTSQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKI 187 (431)
T ss_pred HHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777664 243 2455778888887777777777777766655666666666666666655555554444
No 419
>PRK01156 chromosome segregation protein; Provisional
Probab=58.42 E-value=62 Score=33.65 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026599 149 AEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 149 ~EknELrdEk~~Lk~ekekLe 169 (236)
.+..+++.+...++.+++.++
T Consensus 218 ~~i~~~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 218 KEIERLSIEYNNAMDDYNNLK 238 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 420
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.38 E-value=55 Score=34.40 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 026599 164 EKEKIEQQLKA 174 (236)
Q Consensus 164 ekekLe~qlk~ 174 (236)
+.+++-.+|+.
T Consensus 585 ~~~~~i~~lk~ 595 (782)
T PRK00409 585 EADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 421
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=58.36 E-value=39 Score=26.60 Aligned_cols=34 Identities=18% Similarity=0.430 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 142 EKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 142 eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+.+..+......|......|+.+..+++.+|+.+
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444445555555555555543
No 422
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=58.35 E-value=84 Score=27.59 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+=..|+.-....+.+++.|+.+...+...+..|+....+|+.+...+++.+.-|-...+.
T Consensus 86 LAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 86 LARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666666666666666666666666666666666666666555555544
No 423
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=58.31 E-value=83 Score=30.30 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 144 IKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 144 ik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.+++....+++..+...+..+.++..++++.
T Consensus 289 y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 289 YKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555566666666666655
No 424
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=58.25 E-value=66 Score=31.55 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKI--------------KELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eei--------------k~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
|-.-.+-|.+=+.+.++|+..|++|.++. +.|..-...+++||+.|+.+.+.+.++...
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~E 159 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGE 159 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 44444444444555555555555554432 334444445666777777666666666533
No 425
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=57.94 E-value=42 Score=34.31 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=40.6
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Q 026599 114 AI-LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE----KQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 114 sI-L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE----k~~Lk~ekekLe~qlk~~~ 176 (236)
|| |.++|.-++.+- .+|.+.++.++.++-+.-.+.++++++ +..-++|+++||.+|..++
T Consensus 482 si~Lee~i~~~~~~i---~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 482 SITLEEDIKNLKHDI---NELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred ceeHHHHhhhHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 45 888887666554 445555666666665555666666554 4466889999999998864
No 426
>PHA02557 22 prohead core protein; Provisional
Probab=57.91 E-value=99 Score=29.17 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQ-------RLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~-------~Lk~ekekLe~qlk~~~ 176 (236)
+.++.|-.|+.++.+.+.+...|.++...|+...+++..+.. .-.+||+++...+..|.
T Consensus 138 e~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Egve 203 (271)
T PHA02557 138 EKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEGLE 203 (271)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhccc
Confidence 344555555555555555555555555555544454433222 34678888887777653
No 427
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=57.82 E-value=62 Score=29.88 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNE 153 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknE 153 (236)
..++++..|...+..|.++|.+|..+..+
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~Vae 205 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAE 205 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555444
No 428
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=57.81 E-value=49 Score=30.25 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 148 KAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 148 k~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+.|-..||.|+..|+.++|++.++|..
T Consensus 115 ~sEF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 115 RSEFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556799999999999999998876
No 429
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=57.53 E-value=60 Score=27.61 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026599 122 MVTQLRSEAQKLKD--SNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQPS 180 (236)
Q Consensus 122 ylkqLr~qv~~Lk~--~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p~ 180 (236)
-++.|+.+-..|-. ....|++-+.....+.++++++...++.+++.++..++..-...|
T Consensus 24 kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvg 84 (151)
T PF14584_consen 24 KLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVG 84 (151)
T ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEE
Confidence 34555555555532 333577778888888889999999999999999998886433333
No 430
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=57.46 E-value=45 Score=25.82 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 151 KNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 151 knELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
..+|-.|.+.|..|+.+||+++-.+
T Consensus 56 ~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 56 AKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666553
No 431
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=57.42 E-value=31 Score=32.95 Aligned_cols=52 Identities=21% Similarity=0.403 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
..|..+++++++.+..|+..+.+++....++..++..|...+..|+...+.-
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRn 191 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRN 191 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4566777777777777777777777766666666777777777777777763
No 432
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.40 E-value=40 Score=31.29 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
.|+.++..+++...+|+.|++.+....+..+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555444
No 433
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=57.33 E-value=1.3e+02 Score=26.16 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=35.2
Q ss_pred HHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 88 RDRLNDKFVELASILEPGRPPKTDKAAILIDAVRM---VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 88 RdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~y---lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
|+.+...|.+...+. +...+-.+..++.. ..+|..++..|+.++..|..++.+|+.....+..
T Consensus 90 rde~~~~l~~y~~l~------~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek 155 (189)
T PF10211_consen 90 RDEYRMTLDAYQTLY------ESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEK 155 (189)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666665 11222222233322 4566667777777777777776666666555533
No 434
>PRK14160 heat shock protein GrpE; Provisional
Probab=57.26 E-value=45 Score=30.06 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKE 146 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~ 146 (236)
+|+.++..|++.+..|++++++
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~e 79 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEA 79 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333
No 435
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=57.21 E-value=69 Score=24.10 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
++|+..+++|+..|+.|...+.+.+.+..+|
T Consensus 1 erL~~~ie~L~~~n~~L~~~le~~k~~se~L 31 (67)
T PF10506_consen 1 ERLKRRIEELKSQNEMLSSTLEERKQQSEEL 31 (67)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999998887776666666655
No 436
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=57.14 E-value=79 Score=32.36 Aligned_cols=76 Identities=8% Similarity=0.177 Sum_probs=50.2
Q ss_pred HHHHHhHHHHhhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASILE-PGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 89 dkLNerF~eL~slL~-P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
..||+-|..|..+-. |. .-.-+..+|..|-.+..+++.-...|.+....+..+|.....+.|.|-++...|-.+|.
T Consensus 107 ~~l~~ff~alq~la~~P~--~~~~R~~vl~~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~ 183 (624)
T PRK12714 107 GLWSNFFDSTSALSSNAS--STAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIG 183 (624)
T ss_pred HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666652 22 24567788888888888777777777776666666776666666766665555555554
No 437
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=57.00 E-value=46 Score=25.74 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
+.+.++-|+.....|++.++.+..+..+++++...+...+.++
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333
No 438
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=57.00 E-value=1e+02 Score=27.63 Aligned_cols=76 Identities=16% Similarity=0.389 Sum_probs=35.9
Q ss_pred HHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 86 LRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 86 ~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
.||-+|.-.-..+..+| .---+++ ..|+..++--...-......-+....|...|+.|+.....+.
T Consensus 105 irR~~LeAQka~~eR~i----a~~~~ra----------~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL 170 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLI----AESEARA----------NRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQL 170 (192)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667766666666666 1122333 333333333332222222223334444445555555555555
Q ss_pred HHHHHHHHHh
Q 026599 166 EKIEQQLKAM 175 (236)
Q Consensus 166 ekLe~qlk~~ 175 (236)
..|+.+|..+
T Consensus 171 ~~lQ~qv~~L 180 (192)
T PF11180_consen 171 RQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHH
Confidence 5556555554
No 439
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=56.95 E-value=1.5e+02 Score=32.01 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 151 KNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 151 knELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+.....|..++|.|.+..=..+|.
T Consensus 489 kq~~d~e~~rik~ev~eal~~~k~ 512 (861)
T PF15254_consen 489 KQQFDIETTRIKIEVEEALVNVKS 512 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444666666666655555544
No 440
>PF13514 AAA_27: AAA domain
Probab=56.84 E-value=68 Score=34.63 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=52.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 109 KTDKAAILIDAVRMVTQLRSEAQKLKDS---NSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 109 K~DKAsIL~dAI~ylkqLr~qv~~Lk~~---n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+..+...|..++.-+++|+.++++.+.. ...+..+...+..+..+|+.+...++.+..+++...+.
T Consensus 145 prg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~ 213 (1111)
T PF13514_consen 145 PRGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRA 213 (1111)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778999999999999999998864 45566677777888888888888888888887776555
No 441
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=56.64 E-value=56 Score=31.16 Aligned_cols=38 Identities=32% Similarity=0.466 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 136 SNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 136 ~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
++...+++|-.|..+.-+|+.....+-.|.+.|.+.|.
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333444444444444444433344444444444433
No 442
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=56.57 E-value=69 Score=27.96 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 026599 113 AAILIDAVRMVTQLRSEAQKLKD 135 (236)
Q Consensus 113 AsIL~dAI~ylkqLr~qv~~Lk~ 135 (236)
..-+..+..+|..++.+..+|+.
T Consensus 114 ~~~~~~~~~~L~k~~~~~~Kl~~ 136 (216)
T cd07627 114 WQYWQSAESELSKKKAQLEKLKR 136 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455555555555555543
No 443
>COG1422 Predicted membrane protein [Function unknown]
Probab=56.41 E-value=90 Score=28.23 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQL---RSEAQKLKDSNSSLQEKIKELKAEKNE 153 (236)
Q Consensus 114 sIL~dAI~ylkqL---r~qv~~Lk~~n~~L~eeik~Lk~EknE 153 (236)
.|++--+.+++.+ +++.+++++...++|++.++.+.+.|.
T Consensus 55 vi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~ 97 (201)
T COG1422 55 VITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDM 97 (201)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 3444444555554 456666666777777776666655553
No 444
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=56.15 E-value=64 Score=27.17 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 113 AAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 113 AsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
++||+.==.+|....+.+..|+.+|.-|.+.+-.+.....|= +..++-|+.||+.
T Consensus 70 ~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed-------~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 70 GTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEED-------RKTIELLREQLKI 124 (126)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHh
Confidence 344544445555555556666666666665554444333332 3455556666654
No 445
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=56.14 E-value=67 Score=32.20 Aligned_cols=53 Identities=23% Similarity=0.386 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
|--+.+++.++..++.+.+..+++..+...|.|..+.|.+.-..|++-.++++
T Consensus 73 Vfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~ 125 (499)
T COG4372 73 VFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQEL 125 (499)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555544555554444444444444444444433
No 446
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.09 E-value=47 Score=34.27 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLK 134 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk 134 (236)
..|+.++...-+.+.
T Consensus 279 ~~y~~~~~~k~~~~~ 293 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHME 293 (581)
T ss_pred HHHHHHHHhhhHHHH
Confidence 344555544433333
No 447
>PRK04863 mukB cell division protein MukB; Provisional
Probab=56.00 E-value=63 Score=36.68 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=7.3
Q ss_pred HHHHHHHhHHHHhhhc
Q 026599 87 RRDRLNDKFVELASIL 102 (236)
Q Consensus 87 RRdkLNerF~eL~slL 102 (236)
+..+|++.+.+|..-+
T Consensus 308 nL~rI~diL~ELe~rL 323 (1486)
T PRK04863 308 RLVEMARELAELNEAE 323 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 448
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=55.93 E-value=1.1e+02 Score=25.49 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhC
Q 026599 161 LKAEKEKIEQQLKAMST 177 (236)
Q Consensus 161 Lk~ekekLe~qlk~~~~ 177 (236)
|...+.+....|+.++.
T Consensus 96 le~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 96 LEEKRKKYKERLKELGE 112 (136)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 34444455555555443
No 449
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=55.88 E-value=38 Score=33.33 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 122 MVTQLRSEAQKLKDSNSSLQE--KIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~e--eik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
.+++|+++++.+++....+.. .-.+++.+...|..+...|+..++.|+..|+.+
T Consensus 171 Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l 226 (475)
T PF10359_consen 171 RLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDL 226 (475)
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333221 122334444445555555555555555555554
No 450
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=55.52 E-value=34 Score=27.07 Aligned_cols=33 Identities=39% Similarity=0.412 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
.+|..+.+.|+++.+.|+..+..|.....+++.
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELET 34 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777666666666666666666543
No 451
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=55.45 E-value=38 Score=32.20 Aligned_cols=66 Identities=27% Similarity=0.237 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 82 CREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 82 ~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
..++.||.+.+.+..+.|=== -|-.=-.++..-++.|..+.++|+.+...|+.||++||+-.-|.+
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRq--------KkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQ--------KKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777664444211 122223444455677777777777777777777777776555543
No 452
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=55.33 E-value=53 Score=31.81 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCC
Q 026599 162 KAEKEKIEQQLKAMSTQPSFLTP 184 (236)
Q Consensus 162 k~ekekLe~qlk~~~~~p~~~p~ 184 (236)
|.-+.+|+++...||+.-|++-|
T Consensus 341 kqavsKLk~et~~mnv~igv~eh 363 (384)
T KOG0972|consen 341 KQAVSKLKEETQTMNVQIGVFEH 363 (384)
T ss_pred HHHHHHHHHHHHhhhhheehhhH
Confidence 33344566666666666665554
No 453
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.27 E-value=57 Score=31.20 Aligned_cols=51 Identities=25% Similarity=0.370 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKE-LKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~-Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
.+.|+.++..|++....++..... -.--.|-|-...+.|+.+|+.|-..+.
T Consensus 50 ~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e 101 (310)
T PF09755_consen 50 CKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYE 101 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444332210 011123344445556666666654443
No 454
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.04 E-value=2e+02 Score=27.60 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEK----IKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~ee----ik~Lk~EknELrdEk~~Lk~ek 165 (236)
.....+|+.|+.+|.+|+......+.+ ......+-.++|+||.+|+-..
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L 277 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKL 277 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999877655443 2334445567888998776533
No 455
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=55.04 E-value=80 Score=32.52 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=51.8
Q ss_pred HHHHhHHHHhhhcC-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 90 RLNDKFVELASILE-PGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 90 kLNerF~eL~slL~-P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
.|++-|..|..+-. |. ...-+.++|+.|-.+..+++.-.+.|.+....+..+|+....+.|.|-++...|-.+|.
T Consensus 111 ~L~~Ff~alq~la~~P~--~~aaRq~vl~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~ 186 (626)
T PRK08871 111 NLNEWFDAVKTLADSPN--DLGARKVVLEKAKLISQTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMM 186 (626)
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777662 32 24568888999888888887777777776666777777666677776666666655553
No 456
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=54.97 E-value=42 Score=35.16 Aligned_cols=34 Identities=38% Similarity=0.580 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 140 LQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 140 L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
|-.++++|..|+.-||.|+...|.-+++||.+++
T Consensus 327 LIakVDeL~~E~~vLrgElea~kqak~Klee~i~ 360 (832)
T KOG2077|consen 327 LIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIR 360 (832)
T ss_pred HHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666655555555544443
No 457
>COG5570 Uncharacterized small protein [Function unknown]
Probab=54.96 E-value=27 Score=25.69 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSS-------LQEKIKELKAEKNELRDEKQRLKAE 164 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~-------L~eeik~Lk~EknELrdEk~~Lk~e 164 (236)
.|.+|+.+...|+.+... =...|.+||..|-.|++|...||++
T Consensus 6 hl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 6 HLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466777777766665432 2345888999888999999888875
No 458
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=54.94 E-value=47 Score=25.79 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
.|..+++.|+.....|+.++..+..+.++++.
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555554443
No 459
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=54.74 E-value=22 Score=36.58 Aligned_cols=42 Identities=33% Similarity=0.409 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
+|+.-|+.++++|.++|+.|..|...|+....+|-.|+..||
T Consensus 302 Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 302 EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 566667777777777777777777777777777666666653
No 460
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=54.65 E-value=4.1 Score=41.84 Aligned_cols=83 Identities=27% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 84 EKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVR------MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 84 ER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~------ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
|-+|-|.+.+++..|...+ .|.+..-....... .+.+++.+.++++++..++.+..+.|..+.+++.++
T Consensus 29 ev~r~de~erkL~~le~~I-----~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E~ 103 (759)
T PF01496_consen 29 EVRRCDEMERKLRFLEEEI-----KKLKIPLPEKNDKPDAPKPKEIDELEEELEELEEELRELNENLEKLEEELNELEEE 103 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccHHHHHHHHHHHHHHH-----HHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 026599 158 KQRLKAEKEKIEQQ 171 (236)
Q Consensus 158 k~~Lk~ekekLe~q 171 (236)
+..|+.+++.++..
T Consensus 104 ~~~L~~~~~~l~~~ 117 (759)
T PF01496_consen 104 KNVLEEEIEFLEEL 117 (759)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHhh
No 461
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=54.53 E-value=4.1 Score=37.42 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIK 145 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik 145 (236)
+||.+=.--|.+|+.-|+-|-.+|+.|..|.+
T Consensus 122 T~IEEQ~T~I~dLrrlVe~L~aeNErLr~Enk 153 (243)
T PF08961_consen 122 TRIEEQATKIADLRRLVEFLLAENERLRRENK 153 (243)
T ss_dssp --------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555554444433
No 462
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=54.49 E-value=79 Score=33.40 Aligned_cols=54 Identities=24% Similarity=0.438 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
..|.+|+.++..++..+...+.|..-|....++|+.++..|..++.+|..+||.
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke 87 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKE 87 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666665555555555555555555566666665555555555555554
No 463
>PRK14161 heat shock protein GrpE; Provisional
Probab=54.48 E-value=56 Score=28.53 Aligned_cols=45 Identities=24% Similarity=0.240 Sum_probs=24.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 111 DKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 111 DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
+...|..-+-+.|.-+++++++|+++...+.+....+.+|...+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 9 NEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334454444455555555666666666665555555555555443
No 464
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=54.47 E-value=72 Score=35.09 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
+......|.+|..+++.++.....+++..-.....+..|..++..|+.++..-..
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~ 497 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNK 497 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666665555555555544433333333444444444444333333
No 465
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=54.41 E-value=21 Score=26.27 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026599 153 ELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 153 ELrdEk~~Lk~ekekLe~qlk~ 174 (236)
||.+....|++||.+++..+..
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566666666665554
No 466
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=54.38 E-value=85 Score=25.86 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=5.1
Q ss_pred cchhHHHHHH
Q 026599 79 SKACREKLRR 88 (236)
Q Consensus 79 ~ka~rER~RR 88 (236)
.|.+.=|.|+
T Consensus 42 ~h~~e~~l~~ 51 (134)
T PF07047_consen 42 YHRFEVRLKM 51 (134)
T ss_pred HHHHHHHHHH
Confidence 4444555555
No 467
>PRK09343 prefoldin subunit beta; Provisional
Probab=54.21 E-value=1.2e+02 Score=24.62 Aligned_cols=60 Identities=20% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD----------------------EKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd----------------------Ek~~Lk~ekekLe~qlk 173 (236)
|..-+..+.+|+.+++.+......|+.+.++.+.-..||.. -+..|+..++.++..|+
T Consensus 9 ~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik 88 (121)
T PRK09343 9 VQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSR 88 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q 026599 174 AM 175 (236)
Q Consensus 174 ~~ 175 (236)
.+
T Consensus 89 ~l 90 (121)
T PRK09343 89 TL 90 (121)
T ss_pred HH
No 468
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=54.20 E-value=58 Score=25.18 Aligned_cols=13 Identities=46% Similarity=0.486 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 026599 150 EKNELRDEKQRLK 162 (236)
Q Consensus 150 EknELrdEk~~Lk 162 (236)
++||++|=-+.|-
T Consensus 47 eYNeiKD~gQ~Li 59 (83)
T PF07061_consen 47 EYNEIKDIGQGLI 59 (83)
T ss_pred HHhHHHHHHHHHH
Confidence 4555555444443
No 469
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=54.03 E-value=51 Score=34.79 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=22.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
+.+|+++.++|++++++|+.-.+....-+..++.|...+..++
T Consensus 429 ~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkf 471 (800)
T TIGR01063 429 REKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQF 471 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555444443334445556655555554
No 470
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=53.83 E-value=1.6e+02 Score=31.01 Aligned_cols=40 Identities=35% Similarity=0.390 Sum_probs=30.6
Q ss_pred hHHHHhhhcCCCCC--------CCCchhhhHHHHHHHHHHHHHHHHHHH
Q 026599 94 KFVELASILEPGRP--------PKTDKAAILIDAVRMVTQLRSEAQKLK 134 (236)
Q Consensus 94 rF~eL~slL~P~~~--------~K~DKAsIL~dAI~ylkqLr~qv~~Lk 134 (236)
--.+|.+++ ||.+ .+.|=-+++.-|+..|.+|+.+.+.++
T Consensus 291 F~~EL~si~-p~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d~k 338 (657)
T KOG1854|consen 291 FEQELESIL-PGLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELEDQK 338 (657)
T ss_pred HHHHHHHhc-CCCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346899999 8641 133334889999999999999998855
No 471
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=53.77 E-value=1.5e+02 Score=30.51 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 026599 82 CREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSN 137 (236)
Q Consensus 82 ~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n 137 (236)
.-|-++|.++|+-..+-...=--...+|.+|.++...=-..|+-|.+++...+++.
T Consensus 257 rleekhr~rmd~VmkEW~~ae~qaKnPKAekqalnqhFQ~~v~sLEee~a~erqql 312 (615)
T KOG3540|consen 257 RLEEKHRKRMDKVMKEWEEAETQAKNPKAEKQALNQHFQKTVSSLEEEAARERQQL 312 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888999988887765422223577777777666666777777666665544
No 472
>PF12938 M_domain: M domain of GW182
Probab=53.73 E-value=35 Score=31.39 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.+..+|++|..++.+|+..-..|+.--...+.+...+--+...+|.||-.|+.||-+
T Consensus 147 qtL~LLnQLLq~I~~Lq~~Q~~L~~~~~~~~~~~~q~~~~I~~~kqqI~~lqnQIa~ 203 (235)
T PF12938_consen 147 QTLTLLNQLLQQIKRLQQQQQNLQRQGNASGQEEQQLAVQINKTKQQIQQLQNQIAA 203 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888877555554432222344445555666777788888777764
No 473
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=53.67 E-value=64 Score=30.78 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSN 137 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n 137 (236)
++=+.|..-|.+|..++++|++++
T Consensus 11 GL~~~aLqKIqelE~QldkLkKE~ 34 (307)
T PF10481_consen 11 GLPTRALQKIQELEQQLDKLKKER 34 (307)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888888888877654
No 474
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.56 E-value=70 Score=32.03 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=18.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHH
Q 026599 110 TDKAAILIDAVRMVTQLRSEAQKLKD 135 (236)
Q Consensus 110 ~DKAsIL~dAI~ylkqLr~qv~~Lk~ 135 (236)
.-|+.||++.|.-+.-++.++..+..
T Consensus 268 ~~K~~iL~ekv~~~qti~~e~~~~lk 293 (446)
T KOG4438|consen 268 QEKAKILEEKVTNLQTIEKELKALLK 293 (446)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 46788888888877777776665554
No 475
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=53.50 E-value=50 Score=32.73 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 146 ELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 146 ~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
+|+.|..-+++|.+.|..+++.+..+
T Consensus 278 ~l~~E~~~~~ee~~~l~~Qi~~l~~e 303 (511)
T PF09787_consen 278 ELKQERDHLQEEIQLLERQIEQLRAE 303 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333
No 476
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=53.47 E-value=77 Score=31.84 Aligned_cols=66 Identities=14% Similarity=0.354 Sum_probs=51.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 112 KAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 112 KAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
+...-+....-++++..++..++++...+.+.+..|..+-.+.|+....++..+..+...++..|.
T Consensus 370 ~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 370 QQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345566677778888888888888888888888888888778888888888888888877776554
No 477
>PRK14153 heat shock protein GrpE; Provisional
Probab=53.46 E-value=41 Score=29.91 Aligned_cols=7 Identities=43% Similarity=0.966 Sum_probs=3.1
Q ss_pred CCccCCC
Q 026599 227 QDHVLRP 233 (236)
Q Consensus 227 ~d~~l~p 233 (236)
.|-+|||
T Consensus 174 ~dRVLRP 180 (194)
T PRK14153 174 NSKVIRP 180 (194)
T ss_pred CCEEeeC
Confidence 3444444
No 478
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=53.28 E-value=66 Score=33.38 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=23.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQPS 180 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p~ 180 (236)
|..|+.+.+.|+.+-..|..|++++..+.-.+|.++..|-+.+-.+-..+.
T Consensus 513 I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lrd~e 563 (604)
T KOG3863|consen 513 ILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLRDEE 563 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444444444444444444444444444555555555444444333333
No 479
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.26 E-value=68 Score=30.31 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
|.=||.-|++..+.+++.+-.+..+..+...+..++|.....|+.++..
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777665544455555544444444433
No 480
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=53.24 E-value=87 Score=22.88 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSS 139 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~ 139 (236)
+.+..++.++|+.++.....+...
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~ 44 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRK 44 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666554443
No 481
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=53.14 E-value=24 Score=33.26 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 113 AAILIDAVRMVT-QLRSEAQKLK------DSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 113 AsIL~dAI~ylk-qLr~qv~~Lk------~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
..++++=|+..+ .||.+.+.=| +.+..|++..+.|+.+-.+|-.+...|+.....+.+++-.
T Consensus 198 d~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 198 DMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVME 266 (279)
T ss_pred cchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444 2433332222 2333444444455544445555555555555555554443
No 482
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=52.76 E-value=42 Score=27.21 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNS-SLQEKIKELKAEKNEL 154 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~-~L~eeik~Lk~EknEL 154 (236)
-||.+||.++-.|+.++. .|-+..++-|......
T Consensus 54 t~L~~LR~~lt~lQddIN~fLTeRMe~dK~~~~~~ 88 (103)
T PF08738_consen 54 TYLSELRAQLTTLQDDINEFLTERMEEDKARDAQA 88 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 788999999988887644 5655555444444333
No 483
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=52.74 E-value=38 Score=25.37 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.|.++++.+..+.+.|+.+...+..+..+++..|..
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555566666555554
No 484
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=52.69 E-value=1.4e+02 Score=26.30 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 144 IKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 144 ik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
++.|...-.++-..|..+...+..|+.+++.+
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455444444445555555666666655543
No 485
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=52.65 E-value=58 Score=27.40 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
.|+-....+++|+.++..-..||..|+.+..++...|..|.
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555566666777666666677777777777666666654
No 486
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=52.56 E-value=49 Score=31.82 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=36.5
Q ss_pred HHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 85 KLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 85 R~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
|-+=+++..+|.++.+-+ -+ + .+ .-.......|++|.++|+++|..|+.++.. ..+++.|+..|+
T Consensus 30 ~~~~e~~r~~~~d~~ap~-~~---~---~~--~p~~~~y~~L~~EN~~Lk~Ena~L~~~l~~----~e~l~~En~~Lr 94 (337)
T PRK14872 30 RPVYEKIQDTFVSLCSKF-FP---K---FR--QGPSSHALVLETENFLLKERIALLEERLKS----YEEANQTPPLFS 94 (337)
T ss_pred cHHHHHHHHhhHHHhchh-hH---H---Hh--CcchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 344455666777777666 21 1 11 001155577888888888888777766543 234455555433
No 487
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=52.51 E-value=40 Score=35.30 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
+|-.+|.+|..++.-|+.|....++-+-.|.+.+..|..|+.
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk 367 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELK 367 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777666666655444444444333333333333
No 488
>PF13166 AAA_13: AAA domain
Probab=52.46 E-value=92 Score=31.25 Aligned_cols=81 Identities=20% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASILEPGRPPKTDKAAILIDAVRM--VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 89 dkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~y--lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
+.+|..+.+.-..+ ..-..+..-+.+.+++ +.++...+..+.++...++.++..+..+...+..+...++.++.
T Consensus 373 ~~~n~~i~~~n~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 448 (712)
T PF13166_consen 373 DELNELIEEHNEKI----DNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIK 448 (712)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 026599 167 KIEQQLK 173 (236)
Q Consensus 167 kLe~qlk 173 (236)
.|+.++.
T Consensus 449 ~l~~~~~ 455 (712)
T PF13166_consen 449 ELEAQLK 455 (712)
T ss_pred HHHHHHh
No 489
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=52.40 E-value=18 Score=36.29 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
+||..|..++..--.+|.+|+.++.+|. .+|..|-++..+||..+
T Consensus 272 eYid~LE~rv~~~taeNqeL~kkV~~Le-------~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 272 EYIDGLESRVSAFTAENQELQKKVEELE-------LSNRSLLAQLKKLQTLV 316 (472)
T ss_pred hHHHHHhhhhhhcccCcHHHHHHHHHHh-------hccHHHHHHHHHHHHHH
No 490
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=52.37 E-value=1.2e+02 Score=26.54 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKN-ELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn-ELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+++++-+-|.+|...++.|+...+.+..++.-++.+.. +++-+...|..++.+|...+..
T Consensus 73 ~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~em 133 (157)
T COG3352 73 QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEM 133 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=52.19 E-value=61 Score=34.66 Aligned_cols=53 Identities=36% Similarity=0.495 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQ---RLKAEKEKIEQQLKAM 175 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~---~Lk~ekekLe~qlk~~ 175 (236)
|.-|+-++..|+..-..|-+|+-.|+.|+.+|+++-. .++++.+.|.+.+-++
T Consensus 868 lthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~ 923 (961)
T KOG4673|consen 868 LTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAA 923 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
No 492
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.02 E-value=54 Score=36.63 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 85 KLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAE 164 (236)
Q Consensus 85 R~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~e 164 (236)
+.++.+++..+..|.+-++-....+-+--.++..+-.-+.+++.++.+|+. .++.+-++|.....+|..+..-++.+
T Consensus 404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~---~~~~~~~~l~e~~~~l~~~t~~~~~e 480 (1293)
T KOG0996|consen 404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE---LLEKEERELDEILDSLKQETEGIREE 480 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhHHH
Q ss_pred HHHHHHHH
Q 026599 165 KEKIEQQL 172 (236)
Q Consensus 165 kekLe~ql 172 (236)
+++++.+|
T Consensus 481 ~~~~ekel 488 (1293)
T KOG0996|consen 481 IEKLEKEL 488 (1293)
T ss_pred HHHHHHHH
No 493
>PRK09343 prefoldin subunit beta; Provisional
Probab=52.01 E-value=76 Score=25.71 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 95 FVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 95 F~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
|...+.++ -+.||..+..+--..+..+..++..|++....|++.+.++.....++
T Consensus 57 Yk~VG~vl-----v~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 57 YKIVGNLL-----VKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHhhHHH-----hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>COG1422 Predicted membrane protein [Function unknown]
Probab=51.91 E-value=44 Score=30.17 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEK-----IKELKAEKNELRDEKQRL 161 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~ee-----ik~Lk~EknELrdEk~~L 161 (236)
+-++++|++.++++++..+.+++ ++.|+++..|.++....|
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~el 117 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQREL 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
No 495
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=51.83 E-value=95 Score=31.95 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQP 179 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p 179 (236)
|.+-=+-|.+|+.++++++.+...+..+++.+..+..+.+.++..|..+..-.+.-+..+..++
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e 393 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAE 393 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
No 496
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=51.77 E-value=89 Score=22.55 Aligned_cols=51 Identities=24% Similarity=0.454 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHh
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKN--------------ELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~Ekn--------------ELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
++..++.+|..+...++.++..+..-.+ .-++....+..++++|+..|..|
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 497
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=51.73 E-value=84 Score=34.31 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 85 KLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSE-------AQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 85 R~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~q-------v~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
+.+|..|...-..|...+ ...+.||-.--.|-.-+.+|+++ -+..-+-+..+.+.-++++.++++|...
T Consensus 577 ~EqR~~lRq~~e~L~~~~----~~~~~~AP~Wl~Aq~ALe~L~eQSGe~~~dSq~V~~~MQ~~L~~Ere~t~~rD~l~~~ 652 (1480)
T COG3096 577 REQRMALRQEQEQLQSRI----QSLMQRAPVWLAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLEREREATVERDELGAR 652 (1480)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhhccHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 026599 158 KQRLKAEKEKI 168 (236)
Q Consensus 158 k~~Lk~ekekL 168 (236)
+..|.++|++|
T Consensus 653 r~~ld~qI~RL 663 (1480)
T COG3096 653 KNALDEEIERL 663 (1480)
T ss_pred HHHHHHHHHHh
No 498
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=51.70 E-value=94 Score=24.28 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+.+|-..|+.|-...+.|+...+.+..++.--.+|..+-++++++.-+.++
T Consensus 27 ~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a~s~~ 77 (78)
T COG4238 27 IDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQAQSYC 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhc
No 499
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=51.63 E-value=74 Score=37.20 Aligned_cols=60 Identities=30% Similarity=0.454 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
|.++++.+.+|+.+...|..+...|...+.++..-..||...+..|..+++.|+.+|...
T Consensus 1479 lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeEl 1538 (1930)
T KOG0161|consen 1479 LEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEEL 1538 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=51.61 E-value=65 Score=29.32 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
.+....++|......|..+...|..|...|..|++.|.++++..+..++
T Consensus 35 ~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~ 83 (228)
T PRK06800 35 EIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQ 83 (228)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!