Query 026599
Match_columns 236
No_of_seqs 188 out of 448
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 17:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 8.4E-18 2.9E-22 126.6 9.2 70 78-148 8-77 (82)
2 1nkp_A C-MYC, MYC proto-oncoge 99.6 4E-16 1.4E-20 119.2 8.7 75 78-153 8-84 (88)
3 1nkp_B MAX protein, MYC proto- 99.6 4.4E-16 1.5E-20 116.5 8.5 69 78-147 4-73 (83)
4 4ati_A MITF, microphthalmia-as 99.6 5.8E-16 2E-20 123.8 7.5 84 78-173 29-115 (118)
5 1nlw_A MAD protein, MAX dimeri 99.6 7.5E-15 2.6E-19 110.6 9.5 74 78-152 3-78 (80)
6 1hlo_A Protein (transcription 99.6 4.7E-15 1.6E-19 110.5 7.3 65 78-143 14-79 (80)
7 4h10_B Circadian locomoter out 99.6 3.4E-15 1.2E-19 111.0 5.8 56 78-134 10-65 (71)
8 1an4_A Protein (upstream stimu 99.5 1.6E-14 5.6E-19 103.5 3.0 53 78-131 7-64 (65)
9 1a0a_A BHLH, protein (phosphat 99.4 4.9E-14 1.7E-18 101.8 2.7 52 78-130 4-61 (63)
10 4h10_A ARYL hydrocarbon recept 99.4 6.2E-14 2.1E-18 104.3 2.4 50 78-128 11-63 (73)
11 3u5v_A Protein MAX, transcript 99.3 3.6E-12 1.2E-16 95.3 4.4 57 78-135 7-66 (76)
12 4f3l_A Mclock, circadian locom 99.1 7.2E-11 2.5E-15 106.0 5.8 52 78-130 14-65 (361)
13 4ath_A MITF, microphthalmia-as 99.0 2.8E-09 9.7E-14 81.4 10.4 74 88-173 4-80 (83)
14 1mdy_A Protein (MYOD BHLH doma 98.9 1.1E-09 3.6E-14 80.4 5.2 52 78-130 14-66 (68)
15 2ql2_B Neurod1, neurogenic dif 98.9 1.7E-09 5.9E-14 77.4 5.8 51 79-130 5-57 (60)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.9E-09 6.4E-14 98.2 5.1 52 78-130 15-69 (387)
17 2lfh_A DNA-binding protein inh 98.6 1.1E-08 3.8E-13 75.6 2.7 50 78-128 16-67 (68)
18 2jee_A YIIU; FTSZ, septum, coi 97.8 0.00014 4.7E-09 55.3 9.5 60 116-175 15-74 (81)
19 4aya_A DNA-binding protein inh 97.6 0.00014 4.8E-09 56.9 6.3 55 82-137 31-87 (97)
20 2jee_A YIIU; FTSZ, septum, coi 96.5 0.015 5.3E-07 44.1 8.6 56 120-175 5-67 (81)
21 3hnw_A Uncharacterized protein 96.2 0.04 1.4E-06 44.9 10.3 83 88-173 34-134 (138)
22 1gd2_E Transcription factor PA 95.9 0.011 3.6E-07 43.6 5.0 41 120-160 28-68 (70)
23 3hnw_A Uncharacterized protein 95.4 0.057 1.9E-06 44.0 8.0 43 123-165 91-133 (138)
24 2wt7_A Proto-oncogene protein 94.9 0.051 1.7E-06 38.5 5.6 36 120-155 22-57 (63)
25 3a7p_A Autophagy protein 16; c 94.8 0.2 6.9E-06 41.9 9.6 91 83-175 31-122 (152)
26 1t2k_D Cyclic-AMP-dependent tr 94.6 0.07 2.4E-06 37.4 5.6 34 121-154 22-55 (61)
27 2yy0_A C-MYC-binding protein; 94.6 0.048 1.6E-06 38.0 4.5 38 118-155 2-46 (53)
28 1jnm_A Proto-oncogene C-JUN; B 93.8 0.08 2.7E-06 37.2 4.5 34 121-154 22-55 (62)
29 2oqq_A Transcription factor HY 93.8 0.14 5E-06 34.5 5.4 35 121-155 3-37 (42)
30 3he5_B Synzip2; heterodimeric 93.5 0.17 5.8E-06 34.8 5.6 43 125-167 7-49 (52)
31 3nmd_A CGMP dependent protein 93.3 0.19 6.4E-06 37.4 5.9 49 121-169 19-67 (72)
32 1dh3_A Transcription factor CR 93.1 0.091 3.1E-06 36.6 3.8 31 121-151 22-52 (55)
33 1ci6_A Transcription factor AT 93.0 0.21 7.2E-06 35.4 5.6 16 126-141 28-43 (63)
34 3s9g_A Protein hexim1; cyclin 92.1 0.93 3.2E-05 35.7 8.7 58 109-170 29-93 (104)
35 3s4r_A Vimentin; alpha-helix, 92.0 1.4 4.8E-05 33.4 9.5 34 141-174 55-88 (93)
36 3cve_A Homer protein homolog 1 91.5 0.66 2.3E-05 34.3 6.9 50 124-173 3-52 (72)
37 1t2k_D Cyclic-AMP-dependent tr 91.4 0.51 1.8E-05 32.9 6.0 37 136-172 23-59 (61)
38 2v66_B Nuclear distribution pr 91.2 1.1 3.7E-05 35.6 8.3 52 123-174 5-60 (111)
39 1go4_E MAD1 (mitotic arrest de 91.1 0.81 2.8E-05 35.8 7.4 23 123-145 14-36 (100)
40 2dgc_A Protein (GCN4); basic d 91.0 0.28 9.6E-06 34.9 4.3 28 121-148 30-57 (63)
41 3oja_B Anopheles plasmodium-re 90.9 0.74 2.5E-05 42.9 8.3 16 159-174 561-576 (597)
42 1ci6_A Transcription factor AT 90.8 1.3 4.5E-05 31.3 7.7 45 119-163 14-58 (63)
43 1gu4_A CAAT/enhancer binding p 90.8 2.1 7.1E-05 31.8 9.1 32 144-175 38-69 (78)
44 3m9b_A Proteasome-associated A 90.5 0.31 1.1E-05 43.6 5.1 44 123-180 56-99 (251)
45 4etp_A Kinesin-like protein KA 90.4 0.72 2.5E-05 42.9 7.8 54 123-176 5-58 (403)
46 2v71_A Nuclear distribution pr 90.4 1.7 5.8E-05 37.3 9.5 59 116-174 51-113 (189)
47 3o0z_A RHO-associated protein 90.3 1.7 5.7E-05 36.8 9.2 76 87-169 63-138 (168)
48 3i00_A HIP-I, huntingtin-inter 90.2 1.1 3.6E-05 35.9 7.5 25 114-138 33-57 (120)
49 3htk_A Structural maintenance 90.2 2.3 8E-05 28.9 8.4 51 123-173 7-57 (60)
50 2wt7_A Proto-oncogene protein 90.1 0.89 3E-05 32.0 6.3 37 137-173 25-61 (63)
51 3qh9_A Liprin-beta-2; coiled-c 90.0 2 6.7E-05 32.6 8.4 56 118-173 23-78 (81)
52 3q8t_A Beclin-1; autophagy, AT 89.9 1.4 4.7E-05 33.7 7.7 47 124-170 7-53 (96)
53 3swf_A CGMP-gated cation chann 89.8 0.97 3.3E-05 33.7 6.5 49 124-175 3-51 (74)
54 2fxo_A Myosin heavy chain, car 89.4 2.8 9.6E-05 33.0 9.4 61 114-174 62-122 (129)
55 3s4r_A Vimentin; alpha-helix, 89.3 1.5 5.1E-05 33.3 7.4 55 121-175 23-82 (93)
56 3swy_A Cyclic nucleotide-gated 89.1 1.3 4.6E-05 30.1 6.3 45 125-172 2-46 (46)
57 1gd2_E Transcription factor PA 89.1 0.72 2.5E-05 33.7 5.3 39 136-174 30-68 (70)
58 1deb_A APC protein, adenomatou 88.9 1.2 4E-05 31.3 6.0 40 124-163 6-45 (54)
59 1ik9_A DNA repair protein XRCC 88.8 2.1 7.2E-05 36.9 8.9 39 116-154 127-165 (213)
60 3cvf_A Homer-3, homer protein 88.7 1.2 4E-05 33.5 6.3 49 126-174 11-59 (79)
61 1hjb_A Ccaat/enhancer binding 88.6 3 0.0001 31.6 8.6 29 146-174 40-68 (87)
62 1jnm_A Proto-oncogene C-JUN; B 88.4 0.45 1.5E-05 33.3 3.7 32 139-170 26-57 (62)
63 2dfs_A Myosin-5A; myosin-V, in 88.3 1.2 4.2E-05 46.3 8.4 24 149-172 1023-1046(1080)
64 3m91_A Proteasome-associated A 88.3 1.6 5.5E-05 30.2 6.3 41 121-168 9-49 (51)
65 3m9b_A Proteasome-associated A 88.2 0.45 1.6E-05 42.5 4.4 41 115-155 55-95 (251)
66 3ghg_A Fibrinogen alpha chain; 87.8 1.9 6.7E-05 42.3 8.9 72 90-165 82-154 (562)
67 1hjb_A Ccaat/enhancer binding 87.5 0.82 2.8E-05 34.7 4.9 29 125-153 40-68 (87)
68 3vmx_A Voltage-gated hydrogen 87.4 1.5 5E-05 30.3 5.6 41 127-174 3-43 (48)
69 3he5_A Synzip1; heterodimeric 87.2 2.3 7.9E-05 28.9 6.4 23 121-143 3-25 (49)
70 3oja_B Anopheles plasmodium-re 87.2 9.9 0.00034 35.3 13.1 40 135-174 544-583 (597)
71 2eqb_B RAB guanine nucleotide 87.1 3 0.0001 32.4 8.0 18 123-140 14-31 (97)
72 3m91_A Proteasome-associated A 87.1 2.2 7.6E-05 29.5 6.5 23 153-175 27-49 (51)
73 2dfs_A Myosin-5A; myosin-V, in 87.1 2.3 7.9E-05 44.3 9.5 22 155-176 1022-1043(1080)
74 3efg_A Protein SLYX homolog; x 87.0 1.7 5.7E-05 32.2 6.2 50 126-175 12-61 (78)
75 1go4_E MAD1 (mitotic arrest de 86.7 1.5 5E-05 34.3 6.0 43 141-183 11-53 (100)
76 3ol1_A Vimentin; structural ge 86.7 4 0.00014 32.0 8.6 30 144-173 71-100 (119)
77 2fxo_A Myosin heavy chain, car 86.6 5.4 0.00019 31.4 9.5 55 120-174 61-115 (129)
78 4b4t_K 26S protease regulatory 86.6 0.78 2.7E-05 43.0 5.3 43 139-181 53-95 (428)
79 3u06_A Protein claret segregat 86.2 2.6 8.9E-05 39.4 8.6 53 124-176 6-58 (412)
80 2w6a_A ARF GTPase-activating p 86.2 1.6 5.4E-05 31.6 5.5 36 127-162 26-61 (63)
81 3a7p_A Autophagy protein 16; c 85.9 4.6 0.00016 33.7 9.0 80 90-170 43-131 (152)
82 3htk_A Structural maintenance 85.9 5.4 0.00019 27.0 8.0 50 118-167 9-58 (60)
83 1gu4_A CAAT/enhancer binding p 85.3 1.2 4.2E-05 33.1 4.8 32 124-155 39-70 (78)
84 3na7_A HP0958; flagellar bioge 84.7 3.7 0.00012 35.4 8.2 47 126-172 37-83 (256)
85 3v86_A De novo design helix; c 84.6 0.78 2.7E-05 27.8 2.7 26 122-147 1-26 (27)
86 2v4h_A NF-kappa-B essential mo 84.4 4.3 0.00015 32.3 7.8 19 154-172 88-106 (110)
87 2wt7_B Transcription factor MA 84.3 5.7 0.00019 30.4 8.2 39 137-175 50-88 (90)
88 1c1g_A Tropomyosin; contractIl 84.3 7.1 0.00024 30.9 9.2 25 147-171 249-273 (284)
89 3oja_A Leucine-rich immune mol 83.8 20 0.00068 32.7 13.2 36 138-173 438-473 (487)
90 1nkp_B MAX protein, MYC proto- 83.5 1.6 5.5E-05 31.7 4.7 33 144-176 49-81 (83)
91 1jcd_A Major outer membrane li 83.5 5.3 0.00018 27.7 7.0 44 130-173 6-49 (52)
92 4h22_A Leucine-rich repeat fli 83.5 5.7 0.00019 31.2 8.0 52 123-174 32-83 (103)
93 2eqb_B RAB guanine nucleotide 83.5 8.9 0.0003 29.8 9.1 49 125-173 9-57 (97)
94 3i00_A HIP-I, huntingtin-inter 83.0 13 0.00044 29.5 10.1 67 109-175 10-80 (120)
95 2w83_C C-JUN-amino-terminal ki 82.9 4.6 0.00016 30.3 6.9 36 139-174 34-69 (77)
96 1lwu_C Fibrinogen gamma chain; 82.9 2.6 8.7E-05 38.6 6.8 55 119-173 3-57 (323)
97 3nmd_A CGMP dependent protein 82.7 3 0.0001 30.8 5.9 35 121-155 33-67 (72)
98 2dgc_A Protein (GCN4); basic d 82.6 1.6 5.4E-05 31.0 4.2 33 141-173 29-61 (63)
99 3o0z_A RHO-associated protein 82.3 9.4 0.00032 32.2 9.5 42 130-171 29-70 (168)
100 2ocy_A RAB guanine nucleotide 82.2 6.3 0.00022 32.8 8.3 13 163-175 79-91 (154)
101 2zvf_A Alanyl-tRNA synthetase; 81.8 4 0.00014 32.5 6.8 46 119-164 5-54 (171)
102 3s9g_A Protein hexim1; cyclin 81.8 12 0.0004 29.5 9.1 52 125-176 34-92 (104)
103 2v4h_A NF-kappa-B essential mo 81.6 10 0.00036 30.0 9.0 19 157-175 84-102 (110)
104 3na7_A HP0958; flagellar bioge 81.5 6.9 0.00024 33.6 8.7 22 153-174 94-115 (256)
105 3m48_A General control protein 81.4 1.5 5.2E-05 28.1 3.3 21 124-144 3-23 (33)
106 3oja_A Leucine-rich immune mol 81.2 5.5 0.00019 36.4 8.4 58 118-175 407-468 (487)
107 3a2a_A Voltage-gated hydrogen 81.1 2.5 8.6E-05 30.1 4.7 44 125-175 8-51 (58)
108 1ik9_A DNA repair protein XRCC 80.6 9.5 0.00033 32.8 9.2 52 121-172 125-176 (213)
109 2oxj_A Hybrid alpha/beta pepti 80.5 2.2 7.6E-05 27.5 3.8 21 123-143 3-23 (34)
110 3u59_A Tropomyosin beta chain; 80.2 14 0.00048 27.8 9.1 41 117-157 19-59 (101)
111 3tnu_B Keratin, type II cytosk 80.0 15 0.00051 28.7 9.5 30 117-146 39-68 (129)
112 3u1c_A Tropomyosin alpha-1 cha 79.9 15 0.00052 27.8 9.2 34 118-151 20-53 (101)
113 1m1j_C Fibrinogen gamma chain; 79.9 12 0.00041 35.2 10.4 75 93-170 59-133 (409)
114 2j5u_A MREC protein; bacterial 79.9 0.75 2.6E-05 40.2 2.0 37 133-173 24-60 (255)
115 2oxj_A Hybrid alpha/beta pepti 79.7 2.2 7.5E-05 27.5 3.7 27 137-163 3-29 (34)
116 1kd8_A GABH AIV, GCN4 acid bas 79.2 2.7 9.4E-05 27.4 4.0 23 123-145 3-25 (36)
117 3d5a_X RF1, peptide chain rele 79.2 14 0.00047 34.4 10.4 92 87-179 4-99 (354)
118 1kd8_B GABH BLL, GCN4 acid bas 79.1 4.1 0.00014 26.6 4.8 25 123-147 3-27 (36)
119 2dq0_A Seryl-tRNA synthetase; 78.9 14 0.00049 34.7 10.6 53 123-175 40-102 (455)
120 1wle_A Seryl-tRNA synthetase; 78.8 12 0.00043 35.8 10.3 52 123-174 79-148 (501)
121 1ic2_A Tropomyosin alpha chain 78.7 16 0.00056 26.4 9.4 55 118-172 17-71 (81)
122 1wle_A Seryl-tRNA synthetase; 78.6 8.5 0.00029 36.9 9.1 33 121-153 70-102 (501)
123 2wt7_B Transcription factor MA 78.6 3.9 0.00013 31.3 5.5 35 131-165 51-85 (90)
124 2yy0_A C-MYC-binding protein; 78.5 3.7 0.00013 28.3 4.8 29 144-172 21-49 (53)
125 3ibp_A Chromosome partition pr 78.1 8 0.00027 35.4 8.3 76 83-170 21-104 (302)
126 3swk_A Vimentin; cytoskeleton, 77.9 10 0.00035 28.2 7.5 37 139-175 46-82 (86)
127 3iv1_A Tumor susceptibility ge 77.9 17 0.00059 27.1 8.7 44 126-169 30-73 (78)
128 1wt6_A Myotonin-protein kinase 77.8 18 0.0006 27.3 8.7 42 126-174 29-70 (81)
129 1zbt_A RF-1, peptide chain rel 77.7 6.8 0.00023 36.7 7.9 89 87-178 18-116 (371)
130 3efg_A Protein SLYX homolog; x 77.7 4.1 0.00014 30.1 5.2 48 122-169 15-62 (78)
131 2v66_B Nuclear distribution pr 77.7 9.9 0.00034 30.0 7.7 38 117-154 31-68 (111)
132 3qne_A Seryl-tRNA synthetase, 77.5 16 0.00055 35.1 10.6 52 123-174 42-103 (485)
133 1deq_A Fibrinogen (alpha chain 77.2 6.4 0.00022 37.2 7.6 38 124-162 116-154 (390)
134 2v71_A Nuclear distribution pr 77.1 13 0.00045 31.8 8.9 25 123-147 90-114 (189)
135 2w83_C C-JUN-amino-terminal ki 76.8 17 0.00057 27.2 8.3 17 127-143 8-24 (77)
136 3tnu_A Keratin, type I cytoske 76.8 15 0.0005 28.9 8.6 27 118-144 42-68 (131)
137 4dzn_A Coiled-coil peptide CC- 76.7 4.8 0.00016 25.4 4.5 25 144-168 4-28 (33)
138 3trt_A Vimentin; cytoskeleton, 76.6 8.9 0.00031 27.2 6.7 20 155-174 55-74 (77)
139 3vkg_A Dynein heavy chain, cyt 76.6 7.9 0.00027 45.0 9.4 28 139-166 2039-2066(3245)
140 3c3g_A Alpha/beta peptide with 76.5 4.3 0.00015 26.0 4.3 21 124-144 3-23 (33)
141 1gk6_A Vimentin; intermediate 76.3 9.4 0.00032 26.5 6.5 51 123-173 2-52 (59)
142 1jcd_A Major outer membrane li 76.2 9.6 0.00033 26.4 6.4 43 123-165 6-48 (52)
143 3mq7_A Bone marrow stromal ant 76.0 23 0.0008 28.5 9.5 32 138-169 74-105 (121)
144 3iv1_A Tumor susceptibility ge 75.8 21 0.00072 26.6 8.6 44 131-174 28-71 (78)
145 1wlq_A Geminin; coiled-coil; 2 75.4 9.7 0.00033 28.9 6.8 27 136-162 39-65 (83)
146 2d4y_A HAP1, flagellar HOOK-as 75.4 14 0.00048 34.2 9.4 76 89-166 44-120 (463)
147 3c3f_A Alpha/beta peptide with 75.1 3.6 0.00012 26.5 3.7 21 123-143 3-23 (34)
148 3m48_A General control protein 75.1 3.7 0.00013 26.3 3.7 22 151-172 9-30 (33)
149 3c3f_A Alpha/beta peptide with 74.3 4.2 0.00014 26.2 3.8 26 137-162 3-28 (34)
150 1dh3_A Transcription factor CR 74.2 2.8 9.5E-05 28.9 3.3 30 143-172 23-52 (55)
151 1hs7_A Syntaxin VAM3; UP-and-D 74.0 6.6 0.00022 30.3 5.7 61 115-175 11-76 (97)
152 2wq1_A General control protein 73.9 5.4 0.00019 25.5 4.3 20 124-143 3-22 (33)
153 1zhc_A Hypothetical protein HP 73.7 2.7 9.4E-05 30.7 3.3 19 143-161 45-63 (76)
154 1nlw_A MAD protein, MAX dimeri 73.6 8.3 0.00029 28.3 6.0 29 145-173 50-78 (80)
155 1uo4_A General control protein 73.5 3.8 0.00013 26.4 3.5 25 123-147 3-27 (34)
156 3ni0_A Bone marrow stromal ant 73.4 30 0.001 26.9 9.2 59 116-174 27-85 (99)
157 3ra3_B P2F; coiled coil domain 73.4 2.4 8.2E-05 25.9 2.4 22 125-146 4-25 (28)
158 1ses_A Seryl-tRNA synthetase; 73.3 17 0.00056 33.9 9.3 53 123-175 37-97 (421)
159 3a7o_A Autophagy protein 16; c 73.1 26 0.00087 26.1 8.4 53 122-174 19-71 (75)
160 3he4_B Synzip5; heterodimeric 73.1 9.5 0.00033 25.5 5.5 20 123-142 5-24 (46)
161 2oto_A M protein; helical coil 73.0 14 0.00047 29.7 7.7 31 124-154 53-83 (155)
162 3oa7_A Head morphogenesis prot 73.0 13 0.00046 32.3 8.0 52 97-156 14-65 (206)
163 3tnu_B Keratin, type II cytosk 72.7 5.2 0.00018 31.4 5.0 75 92-173 14-92 (129)
164 1uix_A RHO-associated kinase; 72.4 19 0.00064 26.5 7.5 45 128-172 4-48 (71)
165 1kd8_B GABH BLL, GCN4 acid bas 72.3 5 0.00017 26.2 3.8 25 138-162 4-28 (36)
166 2oqq_A Transcription factor HY 72.1 8.6 0.0003 25.8 5.1 34 130-163 5-38 (42)
167 3c3g_A Alpha/beta peptide with 72.1 5.2 0.00018 25.6 3.8 25 138-162 3-27 (33)
168 1uii_A Geminin; human, DNA rep 72.0 12 0.0004 28.5 6.4 25 137-161 48-72 (83)
169 3jsv_C NF-kappa-B essential mo 71.6 23 0.00079 27.4 8.2 15 160-174 65-79 (94)
170 2wq1_A General control protein 71.5 5.5 0.00019 25.5 3.8 25 138-162 3-27 (33)
171 1dip_A Delta-sleep-inducing pe 71.2 3.4 0.00012 31.0 3.3 28 136-163 16-43 (78)
172 3q8t_A Beclin-1; autophagy, AT 71.2 31 0.0011 26.0 9.4 20 125-144 29-48 (96)
173 1gk4_A Vimentin; intermediate 71.0 14 0.00048 27.1 6.7 43 124-166 29-71 (84)
174 2xv5_A Lamin-A/C; structural p 70.6 16 0.00055 26.7 6.8 50 124-173 8-57 (74)
175 2bni_A General control protein 70.3 6 0.0002 25.5 3.8 21 123-143 3-23 (34)
176 1a93_B MAX protein, coiled coi 70.2 6 0.0002 25.5 3.9 25 143-167 8-32 (34)
177 3jsv_C NF-kappa-B essential mo 70.2 12 0.00042 28.9 6.4 61 116-176 28-88 (94)
178 2xdj_A Uncharacterized protein 70.0 31 0.0011 25.6 8.6 24 122-145 28-51 (83)
179 2bni_A General control protein 69.9 5.1 0.00018 25.8 3.5 27 137-163 3-29 (34)
180 3bas_A Myosin heavy chain, str 69.8 31 0.0011 25.5 9.5 23 153-175 60-82 (89)
181 1x8y_A Lamin A/C; structural p 69.7 29 0.00098 25.6 8.2 46 123-168 30-75 (86)
182 3u06_A Protein claret segregat 69.4 11 0.00038 35.1 7.2 53 122-174 11-63 (412)
183 4emc_A Monopolin complex subun 69.1 17 0.00057 31.3 7.6 36 122-157 21-56 (190)
184 2zxx_A Geminin; coiled-coil, c 69.0 15 0.00052 27.5 6.5 27 136-162 35-61 (79)
185 1nkp_A C-MYC, MYC proto-oncoge 68.9 13 0.00044 27.6 6.1 22 147-168 64-85 (88)
186 3ghg_A Fibrinogen alpha chain; 68.9 4.9 0.00017 39.5 4.7 36 139-174 114-149 (562)
187 3u1c_A Tropomyosin alpha-1 cha 68.8 35 0.0012 25.8 8.9 27 124-150 33-59 (101)
188 2dq0_A Seryl-tRNA synthetase; 68.7 22 0.00076 33.4 9.2 56 120-175 30-95 (455)
189 2wvr_A Geminin; DNA replicatio 68.6 18 0.00062 31.5 7.8 37 135-171 115-151 (209)
190 1kd8_A GABH AIV, GCN4 acid bas 68.4 10 0.00036 24.7 4.7 26 138-163 4-29 (36)
191 1zhc_A Hypothetical protein HP 68.2 7.9 0.00027 28.2 4.8 45 129-173 18-68 (76)
192 2zxx_A Geminin; coiled-coil, c 68.2 21 0.00071 26.8 7.1 33 116-148 29-61 (79)
193 4b4t_M 26S protease regulatory 68.1 5 0.00017 37.7 4.6 48 133-180 30-77 (434)
194 1t3u_A Conserved hypothetical 68.1 28 0.00097 25.8 8.0 61 88-152 32-92 (104)
195 2j5u_A MREC protein; bacterial 67.9 4.3 0.00015 35.4 3.8 45 117-165 15-59 (255)
196 3u59_A Tropomyosin beta chain; 67.4 37 0.0013 25.5 8.9 26 125-150 34-59 (101)
197 3mq9_A Bone marrow stromal ant 67.3 22 0.00075 32.3 8.6 15 122-136 398-412 (471)
198 1lwu_C Fibrinogen gamma chain; 67.2 12 0.0004 34.3 6.7 47 128-174 5-51 (323)
199 2hy6_A General control protein 67.1 6.9 0.00023 25.2 3.6 23 123-145 3-25 (34)
200 4etp_A Kinesin-like protein KA 66.8 18 0.00063 33.4 8.0 56 120-175 9-64 (403)
201 3qne_A Seryl-tRNA synthetase, 66.4 26 0.00088 33.7 9.2 27 123-149 35-61 (485)
202 4h22_A Leucine-rich repeat fli 66.1 29 0.00098 27.2 7.8 51 126-176 28-78 (103)
203 1wlq_A Geminin; coiled-coil; 2 66.0 11 0.00039 28.5 5.3 32 116-147 33-64 (83)
204 1gqe_A Release factor 2, RF2; 65.9 24 0.00081 32.9 8.6 22 84-105 23-45 (365)
205 3mq9_A Bone marrow stromal ant 65.7 28 0.00094 31.6 8.9 14 160-173 447-460 (471)
206 1gmj_A ATPase inhibitor; coile 65.6 22 0.00075 26.9 6.8 13 152-164 61-73 (84)
207 3l4q_C Phosphatidylinositol 3- 65.6 38 0.0013 28.5 9.0 68 111-178 90-160 (170)
208 2lw1_A ABC transporter ATP-bin 65.3 24 0.00084 25.8 7.0 25 127-151 21-45 (89)
209 3q0x_A Centriole protein; cent 65.1 27 0.00093 30.6 8.3 63 110-172 160-222 (228)
210 2zqm_A Prefoldin beta subunit 65.1 18 0.00061 26.9 6.3 46 109-154 58-103 (117)
211 4emc_A Monopolin complex subun 64.9 17 0.00058 31.3 6.8 67 109-175 14-81 (190)
212 4b4t_K 26S protease regulatory 64.9 8.9 0.00031 35.8 5.6 46 117-169 45-90 (428)
213 3gp4_A Transcriptional regulat 64.3 35 0.0012 26.9 8.2 38 137-174 90-127 (142)
214 1m1j_A Fibrinogen alpha subuni 64.2 28 0.00094 33.8 8.8 70 82-152 55-128 (491)
215 1uo4_A General control protein 63.7 9.7 0.00033 24.5 3.8 25 138-162 4-28 (34)
216 3lay_A Zinc resistance-associa 63.4 51 0.0017 27.5 9.4 35 142-179 113-147 (175)
217 1zme_C Proline utilization tra 63.2 4.2 0.00014 27.7 2.3 24 121-144 44-67 (70)
218 2dq3_A Seryl-tRNA synthetase; 63.1 17 0.00058 33.8 7.1 51 124-174 40-100 (425)
219 1uii_A Geminin; human, DNA rep 62.9 27 0.00092 26.4 6.8 26 144-169 48-73 (83)
220 3vmx_A Voltage-gated hydrogen 62.8 26 0.00089 24.1 6.1 28 125-152 8-35 (48)
221 2ve7_C Kinetochore protein NUF 62.7 4 0.00014 35.7 2.6 19 113-131 123-141 (250)
222 1lq7_A Alpha3W; three helix bu 62.7 27 0.00092 24.9 6.4 52 123-174 4-66 (67)
223 2xv5_A Lamin-A/C; structural p 62.6 36 0.0012 24.8 7.4 49 126-174 3-51 (74)
224 3rrk_A V-type ATPase 116 kDa s 62.3 36 0.0012 29.9 8.7 55 119-173 224-279 (357)
225 2wvr_A Geminin; DNA replicatio 62.1 27 0.00091 30.5 7.6 31 116-146 110-140 (209)
226 1ic2_A Tropomyosin alpha chain 62.1 42 0.0014 24.2 8.0 26 148-173 40-65 (81)
227 3vkg_A Dynein heavy chain, cyt 62.1 26 0.00089 40.9 9.5 59 117-175 2024-2096(3245)
228 2pnv_A Small conductance calci 62.1 13 0.00044 24.9 4.4 33 118-150 6-38 (43)
229 3w03_C DNA repair protein XRCC 61.7 15 0.0005 31.4 5.8 31 122-152 146-176 (184)
230 2hy6_A General control protein 61.7 11 0.00038 24.2 3.8 25 138-162 4-28 (34)
231 3gpv_A Transcriptional regulat 61.7 15 0.0005 29.2 5.6 25 149-173 102-126 (148)
232 3a7o_A Autophagy protein 16; c 61.3 29 0.00098 25.8 6.6 34 141-174 24-57 (75)
233 1ses_A Seryl-tRNA synthetase; 61.2 35 0.0012 31.7 8.8 57 120-176 27-91 (421)
234 2ve7_A Kinetochore protein HEC 61.0 12 0.00041 33.6 5.5 28 129-156 186-213 (315)
235 3viq_B Mating-type switching p 60.1 29 0.001 26.2 6.7 25 125-149 5-29 (85)
236 2w6a_A ARF GTPase-activating p 59.8 28 0.00097 25.0 6.2 39 133-171 18-56 (63)
237 2p2u_A HOST-nuclease inhibitor 59.6 53 0.0018 27.0 8.8 54 116-175 18-71 (171)
238 1s1c_X RHO-associated, coiled- 59.6 36 0.0012 25.0 6.9 29 126-154 4-32 (71)
239 2zqm_A Prefoldin beta subunit 59.5 34 0.0012 25.3 7.0 36 140-175 75-110 (117)
240 1wt6_A Myotonin-protein kinase 59.2 23 0.0008 26.7 5.9 34 124-157 41-74 (81)
241 3ghg_C Fibrinogen gamma chain; 58.8 83 0.0028 29.7 11.0 70 93-165 59-128 (411)
242 1a93_B MAX protein, coiled coi 58.7 9.4 0.00032 24.6 3.2 23 125-147 11-33 (34)
243 3tnu_A Keratin, type I cytoske 58.7 28 0.00095 27.2 6.7 41 125-165 81-121 (131)
244 4aj5_1 SKA3, spindle and kinet 58.6 63 0.0022 25.2 8.6 58 116-173 37-98 (101)
245 4dzn_A Coiled-coil peptide CC- 58.6 17 0.00059 22.8 4.3 19 127-145 8-26 (33)
246 3lss_A Seryl-tRNA synthetase; 58.3 49 0.0017 31.7 9.5 28 148-175 109-137 (484)
247 3trt_A Vimentin; cytoskeleton, 58.3 45 0.0015 23.4 8.6 26 143-168 50-75 (77)
248 3w03_C DNA repair protein XRCC 58.2 26 0.0009 29.8 6.8 34 114-147 145-178 (184)
249 3a5t_A Transcription factor MA 58.0 0.33 1.1E-05 38.3 -4.7 28 145-172 68-95 (107)
250 3swk_A Vimentin; cytoskeleton, 57.9 54 0.0019 24.2 8.9 32 123-154 2-33 (86)
251 1s94_A S-syntaxin; three helix 57.8 35 0.0012 27.4 7.4 9 92-100 8-16 (180)
252 2dq3_A Seryl-tRNA synthetase; 57.8 27 0.00093 32.4 7.5 57 120-176 29-95 (425)
253 2p22_A Suppressor protein STP2 57.7 26 0.0009 29.5 6.7 43 130-172 51-93 (174)
254 4dci_A Uncharacterized protein 57.6 79 0.0027 26.0 9.8 67 109-175 24-103 (150)
255 1fmh_A General control protein 57.6 19 0.00064 22.6 4.3 25 124-148 4-28 (33)
256 3rrk_A V-type ATPase 116 kDa s 57.6 68 0.0023 28.1 9.7 18 85-102 62-79 (357)
257 3ol1_A Vimentin; structural ge 57.5 64 0.0022 24.9 9.5 24 122-145 21-44 (119)
258 4e61_A Protein BIM1; EB1-like 57.3 20 0.00068 28.2 5.5 28 125-152 15-42 (106)
259 1deq_A Fibrinogen (alpha chain 57.1 24 0.00081 33.4 6.9 62 91-152 65-130 (390)
260 3he5_A Synzip1; heterodimeric 56.7 43 0.0015 22.6 6.3 43 130-172 5-47 (49)
261 2wg5_A General control protein 56.7 8.7 0.0003 29.5 3.3 27 154-180 12-38 (109)
262 2wuj_A Septum site-determining 56.0 13 0.00043 25.7 3.7 23 122-144 28-50 (57)
263 1joc_A EEA1, early endosomal a 55.9 58 0.002 25.3 8.1 50 110-163 4-53 (125)
264 2r2v_A GCN4 leucine zipper; co 55.7 20 0.00067 23.1 4.3 21 123-143 3-23 (34)
265 3lss_A Seryl-tRNA synthetase; 55.7 46 0.0016 31.9 8.8 21 155-175 109-130 (484)
266 1fxk_A Prefoldin; archaeal pro 55.5 27 0.00092 25.5 5.8 64 92-156 35-100 (107)
267 1l8d_A DNA double-strand break 55.5 26 0.00089 26.0 5.8 37 141-177 9-45 (112)
268 1x79_B RAB GTPase binding effe 55.3 70 0.0024 25.2 8.4 19 155-173 76-94 (112)
269 3bbp_D GRIP and coiled-coil do 54.7 18 0.00063 26.6 4.6 16 154-169 48-63 (71)
270 3nr7_A DNA-binding protein H-N 54.1 39 0.0013 25.3 6.5 42 118-161 9-50 (86)
271 2wg5_A General control protein 54.0 10 0.00035 29.1 3.3 25 146-170 11-35 (109)
272 3oa7_A Head morphogenesis prot 53.6 30 0.001 30.1 6.5 40 130-169 32-71 (206)
273 3cve_A Homer protein homolog 1 53.6 63 0.0022 23.6 7.7 42 118-159 4-45 (72)
274 3a5t_A Transcription factor MA 53.5 0.75 2.6E-05 36.3 -3.3 35 142-176 58-92 (107)
275 2e7s_A RAB guanine nucleotide 52.8 38 0.0013 27.6 6.6 13 160-172 100-112 (135)
276 3bas_A Myosin heavy chain, str 52.2 68 0.0023 23.6 9.1 10 159-168 73-82 (89)
277 2ve7_C Kinetochore protein NUF 51.9 22 0.00075 31.0 5.5 63 111-173 138-200 (250)
278 1fzc_C Fibrin; blood coagulati 51.7 11 0.00038 34.4 3.6 46 128-173 4-49 (319)
279 2w6b_A RHO guanine nucleotide 51.0 43 0.0015 23.6 5.8 24 120-143 9-32 (56)
280 4fla_A Regulation of nuclear P 50.9 70 0.0024 26.1 8.0 26 148-173 120-145 (152)
281 1m1j_C Fibrinogen gamma chain; 50.9 70 0.0024 30.0 9.1 44 132-175 88-131 (409)
282 1fxk_C Protein (prefoldin); ar 50.7 40 0.0014 25.8 6.3 32 123-154 3-34 (133)
283 1t3j_A Mitofusin 1; coiled coi 50.1 77 0.0026 24.4 7.7 22 122-143 48-69 (96)
284 2aze_B Transcription factor E2 50.1 34 0.0012 26.3 5.8 34 123-156 8-41 (106)
285 3mov_A Lamin-B1; LMNB1, B-type 49.8 81 0.0028 23.8 7.9 38 129-166 45-82 (95)
286 2xnx_M M protein, M1-BC1; cell 49.8 71 0.0024 26.4 7.9 18 157-174 88-105 (146)
287 2ve7_A Kinetochore protein HEC 49.5 20 0.00069 32.1 5.0 17 138-154 188-204 (315)
288 2r2v_A GCN4 leucine zipper; co 49.5 23 0.00079 22.8 3.8 25 138-162 4-28 (34)
289 2no2_A HIP-I, huntingtin-inter 48.0 92 0.0032 23.9 9.3 18 117-134 25-42 (107)
290 1grj_A GREA protein; transcrip 47.5 90 0.0031 25.0 8.2 54 122-175 10-72 (158)
291 1lrz_A FEMA, factor essential 46.9 56 0.0019 29.5 7.6 24 121-144 247-270 (426)
292 2ocy_A RAB guanine nucleotide 46.5 81 0.0028 26.1 7.8 8 167-174 133-140 (154)
293 2efr_A General control protein 46.2 1.2E+02 0.0042 24.9 9.2 54 121-174 56-116 (155)
294 3cvf_A Homer-3, homer protein 46.0 66 0.0022 23.9 6.5 41 119-159 11-51 (79)
295 3kin_B Kinesin heavy chain; mo 45.6 24 0.00081 27.4 4.2 6 140-145 101-106 (117)
296 4b4t_J 26S protease regulatory 45.3 20 0.00067 33.5 4.4 44 129-179 26-69 (405)
297 1fxk_C Protein (prefoldin); ar 45.2 84 0.0029 23.9 7.4 37 116-155 86-122 (133)
298 3q4f_C DNA repair protein XRCC 45.1 25 0.00084 30.2 4.5 17 127-143 160-176 (186)
299 1nfn_A Apolipoprotein E3; lipi 44.9 1.1E+02 0.0036 25.5 8.4 54 89-144 69-122 (191)
300 3lay_A Zinc resistance-associa 44.7 1.1E+02 0.0036 25.5 8.4 29 153-182 117-146 (175)
301 3mud_A DNA repair protein XRCC 44.7 54 0.0018 27.8 6.6 29 129-157 136-164 (175)
302 2p4v_A Transcription elongatio 44.5 92 0.0032 25.1 7.8 56 121-176 9-73 (158)
303 1t6f_A Geminin; coiled-coil, c 44.4 52 0.0018 21.4 4.9 20 131-150 10-29 (37)
304 1t6f_A Geminin; coiled-coil, c 44.1 35 0.0012 22.3 4.1 9 136-144 8-16 (37)
305 1deb_A APC protein, adenomatou 43.0 55 0.0019 22.9 5.2 33 138-170 6-38 (54)
306 2dnx_A Syntaxin-12; snare, HAB 42.9 96 0.0033 24.1 7.4 16 159-174 87-102 (130)
307 2l5g_A GPS2 protein, G protein 42.7 34 0.0012 22.4 3.9 6 153-158 26-31 (38)
308 2zvf_A Alanyl-tRNA synthetase; 42.6 18 0.00061 28.6 3.2 44 91-144 12-55 (171)
309 1dip_A Delta-sleep-inducing pe 42.6 12 0.00043 27.9 2.1 25 142-166 15-39 (78)
310 1m1j_B Fibrinogen beta chain; 42.1 2.4E+02 0.0081 27.0 12.4 20 155-174 174-193 (464)
311 4e61_A Protein BIM1; EB1-like 41.9 1.2E+02 0.0042 23.6 8.3 35 125-159 8-42 (106)
312 2xnx_M M protein, M1-BC1; cell 41.5 18 0.00061 30.0 3.1 51 124-174 76-126 (146)
313 1zxa_A CGMP-dependent protein 41.3 30 0.001 25.1 3.9 30 143-172 26-55 (67)
314 3azd_A Short alpha-tropomyosin 41.0 17 0.00057 23.3 2.3 29 121-149 4-32 (37)
315 3mtu_E Head morphogenesis prot 41.0 1.1E+02 0.0037 22.8 7.7 53 97-157 14-66 (77)
316 3gpv_A Transcriptional regulat 40.8 1.2E+02 0.0043 23.7 7.9 38 138-175 98-135 (148)
317 1rq0_A RF-1, peptide chain rel 40.6 20 0.00068 33.2 3.5 24 155-178 59-82 (342)
318 1t3j_A Mitofusin 1; coiled coi 40.0 1.3E+02 0.0043 23.2 7.9 6 167-172 82-87 (96)
319 1gk4_A Vimentin; intermediate 39.9 1.1E+02 0.0036 22.3 9.4 23 149-171 33-55 (84)
320 1m1j_A Fibrinogen alpha subuni 39.9 68 0.0023 31.1 7.2 45 121-165 111-155 (491)
321 2er8_A Regulatory protein Leu3 39.5 17 0.00059 24.7 2.3 21 121-141 49-69 (72)
322 4b4t_J 26S protease regulatory 39.3 40 0.0014 31.5 5.4 42 122-163 26-67 (405)
323 2aze_B Transcription factor E2 39.3 41 0.0014 25.9 4.7 33 144-176 8-40 (106)
324 3mud_A DNA repair protein XRCC 39.3 87 0.003 26.5 7.0 38 115-152 129-166 (175)
325 2e50_A Protein SET; histone ch 39.2 1E+02 0.0034 26.4 7.6 39 115-156 27-65 (225)
326 3l4q_C Phosphatidylinositol 3- 38.8 1.1E+02 0.0037 25.6 7.5 15 88-102 33-47 (170)
327 4aj5_K Spindle and kinetochore 38.8 1.4E+02 0.0049 23.9 7.9 46 129-174 51-96 (123)
328 3sja_C Golgi to ER traffic pro 38.7 65 0.0022 23.2 5.3 54 119-174 4-57 (65)
329 2zdi_C Prefoldin subunit alpha 38.6 61 0.0021 25.5 5.8 30 116-148 96-125 (151)
330 1no4_A Late, head morphogenesi 38.4 1.3E+02 0.0044 22.9 9.5 63 97-167 10-72 (97)
331 1zxa_A CGMP-dependent protein 38.2 43 0.0015 24.2 4.3 28 128-155 25-52 (67)
332 2c5k_T Syntaxin TLG1, T-snare 38.1 59 0.002 24.4 5.3 52 121-172 36-91 (95)
333 4ani_A Protein GRPE; chaperone 37.9 52 0.0018 28.4 5.6 32 124-155 62-93 (213)
334 1l8d_A DNA double-strand break 37.9 1.2E+02 0.0041 22.3 9.3 32 122-153 65-96 (112)
335 2p22_A Suppressor protein STP2 37.9 75 0.0026 26.7 6.4 37 134-170 48-84 (174)
336 3hhm_B NISH2 P85alpha; PI3KCA, 37.8 91 0.0031 28.7 7.5 14 89-102 143-156 (373)
337 3f6n_A Virion-associated prote 37.5 48 0.0016 26.9 4.9 20 115-134 10-29 (129)
338 3fx0_A NF-kappa-B essential mo 37.3 49 0.0017 25.6 4.7 58 109-166 36-93 (96)
339 2ke4_A CDC42-interacting prote 37.3 1.1E+02 0.0037 23.3 6.7 24 78-102 8-31 (98)
340 1lwu_B Fibrinogen beta chain; 37.2 54 0.0018 29.8 5.8 23 143-165 29-51 (323)
341 2ihr_1 Peptide chain release f 37.2 18 0.00062 33.7 2.7 76 88-170 19-103 (365)
342 1g6u_A Domain swapped dimer; d 37.2 93 0.0032 20.9 5.6 12 125-136 4-15 (48)
343 4fla_A Regulation of nuclear P 37.2 1.7E+02 0.0057 23.8 9.2 31 117-147 68-98 (152)
344 2lf0_A Uncharacterized protein 37.1 43 0.0015 27.0 4.6 12 128-139 10-21 (123)
345 3qh9_A Liprin-beta-2; coiled-c 37.0 1.3E+02 0.0045 22.6 7.7 11 163-173 54-64 (81)
346 3kin_B Kinesin heavy chain; mo 36.5 52 0.0018 25.5 4.9 20 155-174 95-114 (117)
347 3k29_A Putative uncharacterize 36.5 1.9E+02 0.0066 24.3 11.0 41 92-137 54-94 (169)
348 1gk6_A Vimentin; intermediate 36.2 73 0.0025 21.9 5.1 17 123-139 9-25 (59)
349 1use_A VAsp, vasodilator-stimu 36.1 52 0.0018 22.3 4.2 13 153-165 19-31 (45)
350 2lw1_A ABC transporter ATP-bin 36.1 1.2E+02 0.0042 21.9 7.7 18 83-100 19-36 (89)
351 1g1e_B SIN3A; four-helix bundl 36.0 67 0.0023 23.8 5.3 18 115-132 9-26 (89)
352 3onj_A T-snare VTI1; helix, HA 35.7 1.3E+02 0.0046 22.2 8.1 14 161-174 77-91 (97)
353 1am9_A Srebp-1A, protein (ster 35.6 48 0.0016 24.0 4.3 22 153-174 54-75 (82)
354 3ra3_A P1C; coiled coil domain 35.5 16 0.00055 22.2 1.4 19 133-151 5-23 (28)
355 1e91_A Paired amphipathic heli 35.2 29 0.001 25.5 3.1 36 114-149 5-40 (85)
356 1m1j_B Fibrinogen beta chain; 34.8 1.2E+02 0.0041 29.0 8.0 18 118-135 118-135 (464)
357 4dyl_A Tyrosine-protein kinase 34.7 2.6E+02 0.0088 25.3 10.2 32 146-177 363-394 (406)
358 2b3t_B RF-1, peptide chain rel 34.6 18 0.00062 33.6 2.3 85 90-175 11-99 (360)
359 3hhm_B NISH2 P85alpha; PI3KCA, 34.2 68 0.0023 29.5 6.1 40 128-167 219-258 (373)
360 1j1d_B Troponin T, TNT; THIN f 34.2 1.6E+02 0.0055 22.8 7.6 12 87-98 26-37 (106)
361 3viq_B Mating-type switching p 34.1 84 0.0029 23.7 5.5 42 123-165 10-64 (85)
362 2oie_A RS21-C6; helix, hydrola 34.0 1.3E+02 0.0045 22.1 6.7 8 125-132 18-25 (111)
363 1x4t_A Hypothetical protein LO 33.9 1.6E+02 0.0054 22.6 7.5 26 153-178 56-81 (92)
364 3a2a_A Voltage-gated hydrogen 33.6 1.1E+02 0.0036 21.7 5.6 25 118-142 8-32 (58)
365 2j69_A Bacterial dynamin-like 33.4 88 0.003 30.5 7.0 42 131-172 355-396 (695)
366 3onj_A T-snare VTI1; helix, HA 32.6 1.5E+02 0.0052 21.9 7.0 17 117-133 44-60 (97)
367 4b4t_L 26S protease subunit RP 32.3 37 0.0013 31.8 4.0 27 153-179 76-102 (437)
368 2f23_A Anti-cleavage anti-GREA 31.9 1.7E+02 0.0059 23.2 7.5 54 123-176 12-73 (156)
369 3he4_A Synzip6; heterodimeric 31.9 88 0.003 21.5 4.8 25 126-150 22-46 (56)
370 1fmh_A General control protein 31.8 69 0.0023 20.1 3.9 18 153-170 12-29 (33)
371 2pms_C Pneumococcal surface pr 31.8 88 0.003 25.2 5.6 51 124-174 64-121 (125)
372 3he4_B Synzip5; heterodimeric 31.6 1.1E+02 0.0039 20.3 5.5 10 132-141 7-16 (46)
373 1joc_A EEA1, early endosomal a 31.4 1.8E+02 0.0062 22.4 7.8 26 127-152 10-35 (125)
374 3kqg_A Langerin, C-type lectin 31.4 78 0.0027 24.5 5.2 12 126-137 4-15 (182)
375 2qyw_A Vesicle transport throu 31.3 81 0.0028 23.7 5.1 23 112-134 47-69 (102)
376 1x8y_A Lamin A/C; structural p 30.9 1.5E+02 0.0053 21.5 9.2 45 129-173 29-73 (86)
377 2aze_A Transcription factor DP 30.8 1.3E+02 0.0045 24.9 6.7 42 129-170 6-47 (155)
378 3ibp_A Chromosome partition pr 30.7 3.1E+02 0.011 25.0 9.9 35 145-180 73-107 (302)
379 2l5g_B Putative uncharacterize 30.4 1.1E+02 0.0037 20.4 4.9 21 128-148 9-29 (42)
380 3fs3_A Nucleosome assembly pro 30.2 1.5E+02 0.005 27.6 7.6 37 117-156 52-88 (359)
381 1ytz_T Troponin T; muscle, THI 30.2 1.2E+02 0.0043 23.4 6.1 26 150-175 64-89 (107)
382 2yko_A LINE-1 ORF1P; RNA-bindi 29.8 94 0.0032 27.3 5.9 37 118-154 10-46 (233)
383 3plt_A Sphingolipid long chain 29.7 2.4E+02 0.0081 24.8 8.5 19 130-148 106-124 (234)
384 1ytz_T Troponin T; muscle, THI 29.4 1.3E+02 0.0044 23.4 6.0 37 120-156 48-84 (107)
385 2no2_A HIP-I, huntingtin-inter 29.2 1.9E+02 0.0066 22.1 8.4 10 90-99 33-42 (107)
386 3mov_A Lamin-B1; LMNB1, B-type 29.0 1.8E+02 0.0062 21.8 9.6 46 129-174 38-83 (95)
387 1x4t_A Hypothetical protein LO 28.8 72 0.0024 24.5 4.4 30 76-105 19-48 (92)
388 2de0_X Alpha-(1,6)-fucosyltran 28.4 1.6E+02 0.0055 28.2 7.8 58 82-141 49-109 (526)
389 2y3a_B Phosphatidylinositol 3- 28.4 2.5E+02 0.0086 25.0 8.6 87 82-172 27-134 (302)
390 2zdi_C Prefoldin subunit alpha 28.2 1.3E+02 0.0044 23.6 6.1 46 126-171 96-141 (151)
391 1pd7_B MAD1; PAH2, SIN3, eukar 28.0 68 0.0023 19.4 3.3 21 109-129 1-21 (26)
392 1a93_A Coiled coil, LZ, MYC pr 27.9 79 0.0027 20.2 3.8 28 140-167 5-32 (34)
393 1vcs_A Vesicle transport throu 27.9 68 0.0023 24.1 4.2 26 111-136 35-60 (102)
394 3q4f_C DNA repair protein XRCC 27.8 74 0.0025 27.2 4.7 29 115-143 155-183 (186)
395 3rmi_A Chorismate mutase prote 27.7 1.2E+02 0.004 23.2 5.6 39 119-157 10-48 (114)
396 3sjb_C Golgi to ER traffic pro 27.7 94 0.0032 23.8 4.9 23 118-140 20-42 (93)
397 2vkl_A RV0948C/MT0975; helical 27.7 72 0.0025 23.5 4.2 35 122-156 13-47 (90)
398 3e98_A GAF domain of unknown f 27.6 1.5E+02 0.005 25.6 6.8 20 123-142 74-93 (252)
399 4ani_A Protein GRPE; chaperone 27.4 1.7E+02 0.0057 25.2 7.0 13 162-174 139-151 (213)
400 3c9i_A Tail needle protein GP2 27.4 3.2E+02 0.011 24.0 9.2 58 115-172 78-135 (242)
401 2d8d_A Aroag, phospho-2-dehydr 27.3 1.1E+02 0.0037 22.0 5.0 35 123-157 5-39 (90)
402 4gkw_A Spindle assembly abnorm 26.9 2.7E+02 0.0092 23.0 8.9 27 122-148 40-66 (167)
403 3he5_B Synzip2; heterodimeric 26.8 1.5E+02 0.0052 20.1 6.2 13 160-172 35-47 (52)
404 4ad8_A DNA repair protein RECN 26.8 2.4E+02 0.0083 25.9 8.5 7 12-18 47-53 (517)
405 2efr_A General control protein 26.7 2.6E+02 0.009 22.9 9.3 12 89-100 73-84 (155)
406 1ybz_A Chorismate mutase; cons 26.6 96 0.0033 23.0 4.7 33 123-155 19-51 (91)
407 3p01_A Two-component response 26.6 48 0.0016 25.1 3.1 59 113-172 2-60 (184)
408 3he4_A Synzip6; heterodimeric 26.5 32 0.0011 23.8 1.8 35 136-170 18-52 (56)
409 4dnd_A Syntaxin-10, SYN10; str 26.2 2.4E+02 0.0082 22.2 8.8 31 118-148 64-94 (130)
410 1j1d_B Troponin T, TNT; THIN f 26.2 1.3E+02 0.0045 23.2 5.6 33 143-175 57-89 (106)
411 2f05_A Paired amphipathic heli 26.0 75 0.0026 24.4 4.1 35 116-150 7-41 (105)
412 1xkm_B Distinctin chain B; por 25.8 71 0.0024 19.1 3.0 19 113-131 3-21 (26)
413 3sja_C Golgi to ER traffic pro 25.4 1.3E+02 0.0046 21.6 5.1 42 136-177 7-53 (65)
414 1yhn_B RILP, RAB interacting l 25.0 44 0.0015 24.2 2.4 21 128-148 10-30 (65)
415 3mtu_A Tropomyosin alpha-1 cha 24.9 1.9E+02 0.0066 20.7 7.4 30 127-156 8-41 (75)
416 1x79_B RAB GTPase binding effe 24.9 2.5E+02 0.0086 22.0 7.2 56 120-175 5-64 (112)
417 1ecm_A Endo-oxabicyclic transi 24.9 1E+02 0.0036 22.8 4.7 33 123-155 7-39 (109)
418 3fx0_A NF-kappa-B essential mo 24.7 31 0.0011 26.8 1.7 9 94-102 18-26 (96)
419 2aze_A Transcription factor DP 24.7 1.2E+02 0.0042 25.1 5.4 32 143-174 6-37 (155)
420 3vbb_A Seryl-tRNA synthetase, 24.5 1E+02 0.0035 29.8 5.6 22 154-175 110-131 (522)
421 1tu3_F RAB GTPase binding effe 24.5 1.1E+02 0.0037 22.9 4.5 46 125-170 9-54 (79)
422 1hlo_A Protein (transcription 24.3 1E+02 0.0035 21.9 4.4 18 153-170 61-78 (80)
423 1gax_A Valrs, valyl-tRNA synth 24.2 1.2E+02 0.0041 30.8 6.3 17 158-174 844-860 (862)
424 3s84_A Apolipoprotein A-IV; fo 24.1 3E+02 0.01 24.0 8.2 17 89-105 18-34 (273)
425 3vp9_A General transcriptional 24.0 2E+02 0.0067 21.9 6.1 46 121-170 40-89 (92)
426 2xzr_A Immunoglobulin-binding 23.9 2.6E+02 0.009 21.9 8.0 50 124-173 55-107 (114)
427 3s84_A Apolipoprotein A-IV; fo 23.9 3.4E+02 0.012 23.6 8.5 19 88-106 127-145 (273)
428 2jn6_A Protein CGL2762, transp 23.8 17 0.00058 25.9 0.1 21 142-162 66-86 (97)
429 3cl3_D NF-kappa-B essential mo 23.7 42 0.0014 27.3 2.3 12 129-140 56-67 (130)
430 2p90_A Hypothetical protein CG 23.7 1.1E+02 0.0036 27.4 5.3 40 135-174 229-268 (319)
431 4ath_A MITF, microphthalmia-as 23.1 1.4E+02 0.0049 22.3 5.1 27 122-148 50-76 (83)
432 1fzc_B Fibrin; blood coagulati 23.0 54 0.0019 29.8 3.3 22 144-165 32-53 (328)
433 3t97_C Nuclear pore glycoprote 23.0 1.4E+02 0.0048 21.1 4.8 41 116-156 7-47 (64)
434 2kmf_A Photosystem II 11 kDa p 22.9 77 0.0026 25.0 3.7 38 115-153 16-53 (115)
435 1hwt_C Protein (heme activator 22.6 48 0.0016 22.8 2.2 22 120-141 57-78 (81)
436 2z5i_A TM, general control pro 22.5 1.8E+02 0.0063 19.6 6.3 17 119-135 10-26 (52)
437 2c5k_T Syntaxin TLG1, T-snare 22.1 2.5E+02 0.0085 20.9 7.6 51 114-164 36-90 (95)
438 1f5n_A Interferon-induced guan 22.1 4.1E+02 0.014 25.8 9.4 11 160-170 571-581 (592)
439 4h62_K Mediator of RNA polymer 21.9 55 0.0019 21.3 2.2 18 89-106 17-34 (40)
440 2xu6_A MDV1 coiled coil; prote 21.7 2.4E+02 0.0083 20.6 5.9 49 119-167 19-67 (72)
441 4i0x_B ESAT-6-like protein MAB 21.6 2.3E+02 0.0079 20.4 8.0 14 161-174 65-78 (103)
442 3ilw_A DNA gyrase subunit A; D 21.6 1.7E+02 0.0058 28.1 6.4 13 90-102 353-365 (470)
443 1avy_A Fibritin, gpwac M; bact 21.5 1.5E+02 0.0052 21.8 4.8 27 157-184 23-49 (74)
444 2qih_A Protein USPA1; trimeric 21.5 3.4E+02 0.011 22.5 7.4 34 123-156 42-75 (157)
445 4b4t_L 26S protease subunit RP 21.4 68 0.0023 30.0 3.6 26 144-169 74-99 (437)
446 3opc_A Uncharacterized protein 21.4 2.8E+02 0.0097 21.3 7.8 51 125-175 12-67 (154)
447 3mtu_A Tropomyosin alpha-1 cha 21.0 2.3E+02 0.008 20.2 6.6 21 122-142 10-30 (75)
448 1lrz_A FEMA, factor essential 20.7 1.6E+02 0.0056 26.5 5.9 11 118-128 220-230 (426)
449 2czy_A Paired amphipathic heli 20.5 1.7E+02 0.0059 20.8 4.9 33 116-148 4-36 (77)
450 1zbt_A RF-1, peptide chain rel 20.4 2.9E+02 0.0098 25.8 7.6 13 210-222 193-205 (371)
451 3uun_A Dystrophin; triple heli 20.3 2.3E+02 0.0078 19.8 8.9 33 114-146 36-68 (119)
452 1cii_A Colicin IA; bacteriocin 20.3 3.4E+02 0.012 26.7 8.2 50 83-137 351-400 (602)
453 3vlc_E Golgi to ER traffic pro 20.3 61 0.0021 25.0 2.5 24 117-140 26-49 (94)
454 2vz4_A Tipal, HTH-type transcr 20.2 2E+02 0.0068 21.0 5.4 8 163-170 95-102 (108)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.73 E-value=8.4e-18 Score=126.58 Aligned_cols=70 Identities=33% Similarity=0.476 Sum_probs=64.4
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
.+|+..||+||++||++|.+|+++| |+...|+||++||.+||+||++|+.+++.|++++..|..+++..+
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lv-P~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLV-VGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3699999999999999999999999 776679999999999999999999999999999999988876554
No 2
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.65 E-value=4e-16 Score=119.15 Aligned_cols=75 Identities=25% Similarity=0.386 Sum_probs=61.0
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGRP--PKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNE 153 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~~--~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknE 153 (236)
.+|+.+||+||++||+.|..|+++| |..+ .|++|++||..||+||+.|+.+.+.|..+.+.|+.+...|+.+..+
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~v-P~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQI-PELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-GGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999 8642 5999999999999999999998888877665555544444444333
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.64 E-value=4.4e-16 Score=116.51 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=56.6
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGR-PPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKEL 147 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~-~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~L 147 (236)
..|+.+||+||++||+.|.+|+++| |.. ..|++|++||..||+||+.|+.++++|+.+.+.|..+...|
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lv-P~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSV-PSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-GGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999 653 36999999999999999999998888866544444433333
No 4
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.62 E-value=5.8e-16 Score=123.84 Aligned_cols=84 Identities=25% Similarity=0.393 Sum_probs=52.4
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCC---CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGR---PPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~---~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
..|+..||+||++||++|.+|+++| |++ ..|++|++||.+||+||+.|+.++++|+++...+ ..|
T Consensus 29 ~~Hn~~ERrRR~~In~~~~~L~~lv-P~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~-----------~~l 96 (118)
T 4ati_A 29 DNHNLIERRRRFNINDRIKELGTLI-PKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ-----------KKL 96 (118)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHS-CCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-hhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 4799999999999999999999999 765 2489999999999999999999999998754322 234
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026599 155 RDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 155 rdEk~~Lk~ekekLe~qlk 173 (236)
+.++..|...+..||.|.+
T Consensus 97 ~~~n~~L~~riqeLE~~a~ 115 (118)
T 4ati_A 97 EHANRHLLLRVQELEMQAR 115 (118)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665544
No 5
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=7.5e-15 Score=110.55 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=62.5
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGR--PPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKN 152 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~--~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn 152 (236)
.+|+..||+||++||+.|..|+++| |.. ..|.+|++||..|++||++|+.+.++|..+++.|..+...|+.+.+
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~v-P~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLV-PLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS-CCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999 753 2589999999999999999999999888877777766666655443
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.57 E-value=4.7e-15 Score=110.50 Aligned_cols=65 Identities=23% Similarity=0.379 Sum_probs=58.5
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGR-PPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~-~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~ee 143 (236)
..|+.+||+||++||+.|.+|+++| |.. ..|++|++||..||+||+.|+.++++|+.+++.|..+
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lv-P~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSV-PSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-GGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHC-cCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999999999999 764 2599999999999999999999999999888877653
No 7
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.56 E-value=3.4e-15 Score=110.96 Aligned_cols=56 Identities=32% Similarity=0.469 Sum_probs=50.7
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLK 134 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk 134 (236)
.+|+..||+||++||++|.+|+++| |+...|+||++||..||+||++|+.++.=|+
T Consensus 10 ~~Hn~iErrRRd~IN~~i~eL~~Lv-P~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 10 VSRNKSEKKRRDQFNVLIKELGSML-PGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-SSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHhC-CCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3699999999999999999999999 7655799999999999999999999876553
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=1.6e-14 Score=103.49 Aligned_cols=53 Identities=28% Similarity=0.474 Sum_probs=47.4
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCCC-----CCCchhhhHHHHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGRP-----PKTDKAAILIDAVRMVTQLRSEAQ 131 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~~-----~K~DKAsIL~dAI~ylkqLr~qv~ 131 (236)
.+|+..||+||++||+.|.+|+++| |++. .|+||++||.+||+||++|+.+.+
T Consensus 7 ~~H~~~Er~RR~~in~~~~~L~~lv-P~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 7 AQHNEVERRRRDKINNWIVQLSKII-PDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHS-CCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HhhchHHHHHHHHHHHHHHHHHHHC-cCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999 7653 278999999999999999987653
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.42 E-value=4.9e-14 Score=101.85 Aligned_cols=52 Identities=31% Similarity=0.456 Sum_probs=46.5
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCC------CCCCchhhhHHHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGR------PPKTDKAAILIDAVRMVTQLRSEA 130 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~------~~K~DKAsIL~dAI~ylkqLr~qv 130 (236)
.+|...||+||++||..|.+|+++| |++ ..|.+||+||..||+||++|+.++
T Consensus 4 ~~H~~aEr~RR~rIn~~~~~L~~Ll-P~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 4 ESHKHAEQARRNRLAVALHELASLI-PAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TGGGGGTHHHHHHHHHHHHHHHHTS-CHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999 742 258889999999999999998765
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.40 E-value=6.2e-14 Score=104.29 Aligned_cols=50 Identities=38% Similarity=0.466 Sum_probs=45.5
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCC---CCCCchhhhHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGR---PPKTDKAAILIDAVRMVTQLRS 128 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~---~~K~DKAsIL~dAI~ylkqLr~ 128 (236)
..|+..||+||++||+.|.+|++|| |.+ ..|+|||+||..||+||+.|+.
T Consensus 11 ~~H~~~ERrRR~rIN~~l~eL~~Lv-P~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 11 EAHSQIEKRRRDKMNSFIDELASLV-PTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHc-cccccccccccHHHHHHHHHHHHHHHhc
Confidence 4699999999999999999999999 754 2699999999999999999874
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.25 E-value=3.6e-12 Score=95.34 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=48.4
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCC-C-CCCC-chhhhHHHHHHHHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPG-R-PPKT-DKAAILIDAVRMVTQLRSEAQKLKD 135 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~-~-~~K~-DKAsIL~dAI~ylkqLr~qv~~Lk~ 135 (236)
..|+.+||+||+.||+.|.+|+.+| |. . ..|. .|++||..||+||+.|+.++++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~v-P~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMC-QMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHc-CCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999 63 1 2355 7999999999999999999988753
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.09 E-value=7.2e-11 Score=106.01 Aligned_cols=52 Identities=33% Similarity=0.512 Sum_probs=42.9
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEA 130 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv 130 (236)
.+|+..||+|||+||+.|.+|++|| |+...|+||++||..||.||+.|+...
T Consensus 14 ~~~~~~e~~rr~~~n~~~~~l~~~~-p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 14 VSRNKSEKKRRDQFNVLIKELGSML-PGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTC-CSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 4688899999999999999999999 754479999999999999999987643
No 13
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.00 E-value=2.8e-09 Score=81.43 Aligned_cols=74 Identities=26% Similarity=0.413 Sum_probs=54.6
Q ss_pred HHHHHHhHHHHhhhcCCC---CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 88 RDRLNDKFVELASILEPG---RPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAE 164 (236)
Q Consensus 88 RdkLNerF~eL~slL~P~---~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~e 164 (236)
|+.||++|.+|+.+| |. ...|.+|++||..||+||+.|+.+.++++++...+ ..|...|..|...
T Consensus 4 R~nIN~~I~EL~~Li-P~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~-----------k~le~~n~~l~~r 71 (83)
T 4ath_A 4 RFNINDRIKELGTLI-PKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ-----------KKLEHANRHLLLR 71 (83)
T ss_dssp HHHHHHHHHHHHHHS-CCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccC-CCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhhhhHHHHHH
Confidence 889999999999999 53 23589999999999999999999988887654322 1233445555555
Q ss_pred HHHHHHHHH
Q 026599 165 KEKIEQQLK 173 (236)
Q Consensus 165 kekLe~qlk 173 (236)
+-.||-|-+
T Consensus 72 iqELE~qa~ 80 (83)
T 4ath_A 72 VQELEMQAR 80 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.92 E-value=1.1e-09 Score=80.44 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=46.3
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCC-CCCCchhhhHHHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGR-PPKTDKAAILIDAVRMVTQLRSEA 130 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~-~~K~DKAsIL~dAI~ylkqLr~qv 130 (236)
..|+.+||+|+..||+.|..|+.+| |.. ..|++|+.||..||+||..|+..+
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~i-P~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRST-SSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-CSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999 653 359999999999999999998754
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.91 E-value=1.7e-09 Score=77.43 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=45.9
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHH
Q 026599 79 SKACREKLRRDRLNDKFVELASILEPGR--PPKTDKAAILIDAVRMVTQLRSEA 130 (236)
Q Consensus 79 ~ka~rER~RRdkLNerF~eL~slL~P~~--~~K~DKAsIL~dAI~ylkqLr~qv 130 (236)
.++.+||.|+..||+.|..|+.+| |.. ..|++|+.||..||+||..|++.+
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~l-P~~~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVV-PCYSKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-SSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHc-cCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999 754 249999999999999999998765
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.84 E-value=1.9e-09 Score=98.19 Aligned_cols=52 Identities=37% Similarity=0.455 Sum_probs=45.5
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCC---CCCCCchhhhHHHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPG---RPPKTDKAAILIDAVRMVTQLRSEA 130 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~---~~~K~DKAsIL~dAI~ylkqLr~qv 130 (236)
.+|+..||+||+++|+.|.+|++|| |. ...|+||++||..||.||+.|+...
T Consensus 15 ~~~~~~ek~rR~~~n~~~~~L~~l~-p~~~~~~~k~dk~~il~~~~~~l~~~~~~~ 69 (387)
T 4f3l_B 15 EAHSQIEKRRRDKMNSFIDELASLV-PTCNAMSRKLDKLTVLRMAVQHMKTLRGAT 69 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHCSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred ccccchhhcchHHHHHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHHHhhccc
Confidence 3699999999999999999999999 72 2369999999999999999998543
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.64 E-value=1.1e-08 Score=75.63 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=44.0
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhcCCCCC--CCCchhhhHHHHHHHHHHHHH
Q 026599 78 SSKACREKLRRDRLNDKFVELASILEPGRP--PKTDKAAILIDAVRMVTQLRS 128 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL~P~~~--~K~DKAsIL~dAI~ylkqLr~ 128 (236)
..-+++||+|+..||+-|..|+.+| |..+ .|++|..||.-||+||..|+.
T Consensus 16 ~~a~erER~Rm~~lN~aF~~LR~~V-P~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 16 GPAAEEPLSLLDDMNHCYSRLRELV-PGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCBCCCSCSSSHHHHHHHHHHHHC-CCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3456899999999999999999999 7642 499999999999999999974
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=97.81 E-value=0.00014 Score=55.33 Aligned_cols=60 Identities=27% Similarity=0.506 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+..||+-|.-|+-++++|++.|..|.++..+++.....|++||..|+.|...++..|.++
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999874
No 19
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.55 E-value=0.00014 Score=56.87 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHhHHHHhhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 026599 82 CREKLRRDRLNDKFVELASILEPGR--PPKTDKAAILIDAVRMVTQLRSEAQKLKDSN 137 (236)
Q Consensus 82 ~rER~RRdkLNerF~eL~slL~P~~--~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n 137 (236)
.+||.|=..+|+-|..|+..| |.. ..|+.|..||.-||+||..|+.-++.-...+
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~v-P~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~ 87 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELV-PSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPS 87 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC-TTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred ccHHHHHHHHHHHHHHHHHHC-CCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 346778888999999999999 754 2499999999999999999998776544433
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.51 E-value=0.015 Score=44.07 Aligned_cols=56 Identities=29% Similarity=0.423 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQR-------LKAEKEKIEQQLKAM 175 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~-------Lk~ekekLe~qlk~~ 175 (236)
.+++.+|..+|+.+-+.+.-|+.|+.+||.+.+.|.+++.. |..+..+|.++...+
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999998888888888877 556777777766654
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.24 E-value=0.04 Score=44.87 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=45.3
Q ss_pred HHHHHHhHHHHhhh--cCCCCCCCCchhhhHHH--HH-HH------HHHHHHHHHH-------HHHhhhhHHHHHHHHHH
Q 026599 88 RDRLNDKFVELASI--LEPGRPPKTDKAAILID--AV-RM------VTQLRSEAQK-------LKDSNSSLQEKIKELKA 149 (236)
Q Consensus 88 RdkLNerF~eL~sl--L~P~~~~K~DKAsIL~d--AI-~y------lkqLr~qv~~-------Lk~~n~~L~eeik~Lk~ 149 (236)
-..+|+++.++++. - |.. -.++.+||.- .+ +| +.+|+.++++ |+.++..++.++.+++.
T Consensus 34 A~~vd~km~ei~~~~~~-~~l--~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~ 110 (138)
T 3hnw_A 34 ASYINNKITEFNKEESY-RRM--SAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK 110 (138)
T ss_dssp HHHHHHHHHHHTTCHHH-HTS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999976 6 554 6788888752 11 22 2233333333 33333334444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 150 EKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 150 EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+..+|++++..|..++-+||..++
T Consensus 111 e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 22
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=95.92 E-value=0.011 Score=43.57 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQR 160 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~ 160 (236)
-.||++|..+|..|+..+..|..++..|+.+...|+.|+..
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888877776655555555444444444443
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.43 E-value=0.057 Score=43.96 Aligned_cols=43 Identities=28% Similarity=0.330 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
+..|+.++..++..++.+..++.+|+.+.++|+.++..|.++.
T Consensus 91 ~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 91 IYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555443
No 24
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=94.95 E-value=0.051 Score=38.51 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
..++.+|+.++..|+.+|..|..+|..|+.|+..|+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777788888888777777777766665555554
No 25
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.2 Score=41.87 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=42.7
Q ss_pred HHHH-HHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026599 83 REKL-RRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRL 161 (236)
Q Consensus 83 rER~-RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~L 161 (236)
.+|. =|++|-.+|.+|-+-+ -+.++. .=+|=+.+-+..|..|+.+...|+..+..|.+++++-......|+||...|
T Consensus 31 ~~rL~~Rd~~E~~~~~l~~e~-~~~~~~-~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aL 108 (152)
T 3a7p_A 31 IRRLTDRNDKEAHLNELFQDN-SGAIGG-NIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISG 108 (152)
T ss_dssp ---------------------------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHhh-ccCCCc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 4677666676666654 121111 123333444556777777777777777777777666555566678888877
Q ss_pred HHHHHHHHHHHHHh
Q 026599 162 KAEKEKIEQQLKAM 175 (236)
Q Consensus 162 k~ekekLe~qlk~~ 175 (236)
..+..-+|..++.+
T Consensus 109 qlq~n~lE~kl~kL 122 (152)
T 3a7p_A 109 TIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766653
No 26
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=94.62 E-value=0.07 Score=37.36 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
.|+.+|+.++..|+.+|..|..++..|+.|...|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665555555554444443333
No 27
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=94.55 E-value=0.048 Score=38.01 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=14.4
Q ss_pred HHHHHHHHHHH-------HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRS-------EAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 118 dAI~ylkqLr~-------qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
+|++||++--. .++.|+.+|..|+.++..|+.+..||+
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888887644 455555555555555555554444443
No 28
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=93.79 E-value=0.08 Score=37.23 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
.|+.+|+.++..|+.+|..|..++..|..|...|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655555444444433
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=93.78 E-value=0.14 Score=34.48 Aligned_cols=35 Identities=29% Similarity=0.548 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
.||.+|..++..|+..|..|++.+..|..|-.=||
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 49999999999999999999998877776544444
No 30
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=93.55 E-value=0.17 Score=34.84 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
-|+.++.+|++.|-+|+..-+.|..-...||||..+|..|...
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4788999999999888877777777777888888888776543
No 31
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=93.28 E-value=0.19 Score=37.37 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
.-|.+|+..+++-.++....++.|++|..+..|..++...|+.+.++++
T Consensus 19 gti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 19 GSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3388899888888888888888899999999998888888888887764
No 32
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=93.11 E-value=0.091 Score=36.58 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEK 151 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ek 151 (236)
.||.+|..+|..|+.+|..|..++..|+.+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777777777777777777777766666543
No 33
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=92.95 E-value=0.21 Score=35.44 Aligned_cols=16 Identities=31% Similarity=0.572 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhhhhHH
Q 026599 126 LRSEAQKLKDSNSSLQ 141 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~ 141 (236)
|..+++.|+.+|..|.
T Consensus 28 le~~~~~L~~~N~~L~ 43 (63)
T 1ci6_A 28 LTGECKELEKKNEALK 43 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 34
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=92.08 E-value=0.93 Score=35.69 Aligned_cols=58 Identities=26% Similarity=0.430 Sum_probs=37.4
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 109 KTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQE-------KIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 109 K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~e-------eik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
.|+|.-++.+-+. |...+..|+++|..|+. .+.+|..|...|+.||+.|+.|.+-+.+
T Consensus 29 ~mSKqELIqEYl~----LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 29 NMSKQELIKEYLE----LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp TSCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5778877776554 55566666666666655 4566666666666666666666555444
No 35
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=91.99 E-value=1.4 Score=33.41 Aligned_cols=34 Identities=21% Similarity=0.597 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 141 QEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 141 ~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+.+|..|+....++..|+..|..|+..|+..+..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777777777777777766654
No 36
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=91.52 E-value=0.66 Score=34.32 Aligned_cols=50 Identities=12% Similarity=0.251 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
..+..+++.++.+|..|++.+..|+....+-+.+-..++.|..++-++|-
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667778888888888888888888888877777778787777776654
No 37
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=91.39 E-value=0.51 Score=32.87 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 136 SNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 136 ~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
....|+.++..|+.+..+|+.+...|+.|+..|.++|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555666555566666666666665555544
No 38
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.17 E-value=1.1 Score=35.62 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAE----KNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~E----knELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.++|+..+..|..+++.+.++.+....+ .+.|++|...|+..++.+...|+-
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iRe 60 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777766666665555444333 344555555555555555555443
No 39
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=91.09 E-value=0.81 Score=35.78 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIK 145 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik 145 (236)
+..|+.+++.|+.++..|.+++.
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 40
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=90.97 E-value=0.28 Score=34.95 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
.++.+|+.+++.|+.+|..|..++..|+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444444443333
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.89 E-value=0.74 Score=42.88 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 026599 159 QRLKAEKEKIEQQLKA 174 (236)
Q Consensus 159 ~~Lk~ekekLe~qlk~ 174 (236)
..++.|...+.++++.
T Consensus 561 ~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 561 AELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 42
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=90.81 E-value=1.3 Score=31.28 Aligned_cols=45 Identities=31% Similarity=0.364 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
|.+|=..=+.+.+.|+.+...|..+..+|+.+.+.|+.|+..|+.
T Consensus 14 A~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 14 ATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555555555554444444443
No 43
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=90.79 E-value=2.1 Score=31.83 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 144 IKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 144 ik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
..++.....+|..||..|+.+++.|+.++..+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666654
No 44
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=90.47 E-value=0.31 Score=43.58 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQPS 180 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p~ 180 (236)
+++|+.+++.|...|+.|.+++ ..++.|+.+|+.||+.+..||.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~L--------------k~ar~El~~LkeElerL~sPPL 99 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETL--------------KEARQQLLALREEVDRLGQPPS 99 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHH--------------HHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhcCCCc
Confidence 4455555555555544444333 3344445555555666666663
No 45
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=90.42 E-value=0.72 Score=42.89 Aligned_cols=54 Identities=20% Similarity=0.370 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
|.+|+++++.|+++...|+++++.++.+..++.++.........+|.++++.+.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 457888888888888888888888888888888877777777888888888863
No 46
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.42 E-value=1.7 Score=37.26 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAE----KNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~E----knELrdEk~~Lk~ekekLe~qlk~ 174 (236)
|..+=.-+++|+.++..|+.+...+..+.+....+ .+.|++|.+.|+..+..|...|..
T Consensus 51 L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 51 LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666655555554444444 555666666666666666555543
No 47
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.32 E-value=1.7 Score=36.81 Aligned_cols=76 Identities=20% Similarity=0.364 Sum_probs=42.2
Q ss_pred HHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 87 RRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 87 RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
-|+.|-.-+..|.+.|+-.+ .-...+-+.+++|+.++..|..+++.+.+....+..+...|.+....|..++.
T Consensus 63 ~k~~Leke~~~LQa~L~qEr-------~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 63 SKSQTDKDYYQLQAILEAER-------RDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666662221 11233445566666666666666665555555555555555555555555555
Q ss_pred HHH
Q 026599 167 KIE 169 (236)
Q Consensus 167 kLe 169 (236)
.++
T Consensus 136 ~~e 138 (168)
T 3o0z_A 136 NLE 138 (168)
T ss_dssp HHH
T ss_pred hhh
Confidence 555
No 48
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.22 E-value=1.1 Score=35.87 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNS 138 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~ 138 (236)
.|..++=+||.+|+.+|..|+.+++
T Consensus 33 ~l~~E~q~~v~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 33 NMKTESQRVVLQLKGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665544
No 49
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.16 E-value=2.3 Score=28.90 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+.+|+..+..++.....+..+...++...+++..+......+|.+++.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544455555555555555555555556666666655554
No 50
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=90.09 E-value=0.89 Score=31.99 Aligned_cols=37 Identities=38% Similarity=0.472 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 137 NSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 137 n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+..|+.++..|+.+..+|+.+...|+.|+..|...|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555543
No 51
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=89.99 E-value=2 Score=32.58 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+-|.=|++|+-+|.+|+.+--+-+.+++.-+.|...|++....-.+++++|+.+|-
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 44567888999999888766666666777777777788777777888888888875
No 52
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.93 E-value=1.4 Score=33.66 Aligned_cols=47 Identities=19% Similarity=0.434 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
..|+.+++.|+.+-..|..++..|..++.++..+...++.+.++|..
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555555555555555555555555555555443
No 53
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=89.76 E-value=0.97 Score=33.72 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
++|.++|++|+...+.||....-|-.|....+ .+||+.+.+||.+++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ---~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQ---QKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccc
Confidence 45788999999999999999888887766543 78999999999999973
No 54
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.37 E-value=2.8 Score=33.04 Aligned_cols=61 Identities=18% Similarity=0.301 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
..|.++-+....|..+-..|+.....+.+.+.+.....++|..++..|..++..|+.+|..
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777666666666666665555555555555555555555555555555554
No 55
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.30 E-value=1.5 Score=33.28 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEK----IKE-LKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~ee----ik~-Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+-|+.|..+...|+.+...++.. +.. -..+..+||.....+..++.+++.++..|
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555444444332 111 24556667777777777777777777654
No 56
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=89.15 E-value=1.3 Score=30.13 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
+|.+.|++|+...+.|+....-|-.|.... -.+||..+.+||.++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ss---q~KlKqRit~lE~~v 46 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNAT---QMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 578889999999999999888877776654 367999999998763
No 57
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=89.08 E-value=0.72 Score=33.75 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 136 SNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 136 ~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.+..|+.++.+|..+...|..||..|+.++..|..+++.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666667778888888888888887764
No 58
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=88.94 E-value=1.2 Score=31.33 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
.||-.||+.|+.+|..|..|++.=....+.|..|..-+|.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe 45 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKE 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH
Confidence 4788899999999998887765555555554444444443
No 59
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=88.79 E-value=2.1 Score=36.94 Aligned_cols=39 Identities=10% Similarity=0.237 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
++=++.-+..|+.++..|.++|..|+.+++.|..+..++
T Consensus 127 fd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 127 IAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666666655555555555444444443
No 60
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=88.71 E-value=1.2 Score=33.51 Aligned_cols=49 Identities=24% Similarity=0.427 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+..+++.++..|..|++.+..|.....+-+.+-..++.|+.++-++|-.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~ 59 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDV 59 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456777777777777777777777777777777777777777666543
No 61
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=88.62 E-value=3 Score=31.61 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 146 ELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 146 ~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
++..+..+|..||..|+.+++.|+.++..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555554
No 62
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=88.36 E-value=0.45 Score=33.34 Aligned_cols=32 Identities=34% Similarity=0.547 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
.|+.++..|+.+..+|+.+...|..|+..|.+
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
No 63
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.32 E-value=1.2 Score=46.28 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 149 AEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 149 ~EknELrdEk~~Lk~ekekLe~ql 172 (236)
...+.|++||+.|+++++.|+.++
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666666666665433
No 64
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=88.26 E-value=1.6 Score=30.22 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
+-+.+|+.++..|...|..|.+..+ +.|++...|+.++++|
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~-------~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLK-------EARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 3455777777777777777766543 4455566666666665
No 65
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=88.15 E-value=0.45 Score=42.53 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
=+.+....+.+|..+.++|++....+..|+..|+.|.+.|+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566777788888888888888888877766666655543
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.83 E-value=1.9 Score=42.30 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=49.7
Q ss_pred HHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 90 RLNDKFVELASILEPGRPPKTDKAAILIDAVRMVT-QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 90 kLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylk-qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
.++..+..+..+| ..+...+.=+..++.-|. +|+.+++.|+.++..-...|+.|+.-..+++.+.++|...|
T Consensus 82 dseqy~k~~~E~L----r~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 82 DSHSLTTNIMEIL----RGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHTT----SSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666 134444445555555555 89999999988776655778888888888888888886655
No 67
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=87.50 E-value=0.82 Score=34.72 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNE 153 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknE 153 (236)
+++.++..|+.+|..|..+|..|+.|...
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444333
No 68
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=87.41 E-value=1.5 Score=30.33 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 127 RSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 127 r~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+.++.+|++.|..|-..+.+|...++++ ..||++|+.-|+.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~-------eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEK-------EQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHH-------HHHHHHHHHHHHH
Confidence 3567889999999988887777666664 4566777766664
No 69
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=87.19 E-value=2.3 Score=28.86 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~ee 143 (236)
.++.||..++..|+.+|+.|..+
T Consensus 3 nlvaqlenevaslenenetlkkk 25 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHh
Confidence 46789999999999999888755
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.16 E-value=9.9 Score=35.28 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=24.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 135 DSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 135 ~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
++...++..+++-+....|+++|++.+++++..|++.+..
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444445555556667777777777777777766654
No 71
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.12 E-value=3 Score=32.44 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhhhhH
Q 026599 123 VTQLRSEAQKLKDSNSSL 140 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L 140 (236)
|.+|+.++...+.+...|
T Consensus 14 l~~le~~~~~~~~e~~~L 31 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRL 31 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 333333333333333333
No 72
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=87.11 E-value=2.2 Score=29.50 Aligned_cols=23 Identities=4% Similarity=0.215 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 026599 153 ELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 153 ELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
.|-+-...-+.++.+|..+|..+
T Consensus 27 rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 27 KLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666666666554
No 73
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.05 E-value=2.3 Score=44.29 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026599 155 RDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 155 rdEk~~Lk~ekekLe~qlk~~~ 176 (236)
++....|+.|+.+|++|+..++
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666665543
No 74
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=87.00 E-value=1.7 Score=32.19 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
|..++.+|+....-++.-|.+|....-+...+...|+.+...|..+++.+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444445555555555555555544
No 75
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=86.71 E-value=1.5 Score=34.33 Aligned_cols=43 Identities=30% Similarity=0.438 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 026599 141 QEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQPSFLT 183 (236)
Q Consensus 141 ~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p~~~p 183 (236)
.+++..|+.++.+|+.|+..|+.+|+.||-+|......-.|-|
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~ 53 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ 53 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 3467778888888888999999999999999988655555544
No 76
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.68 E-value=4 Score=31.96 Aligned_cols=30 Identities=7% Similarity=0.297 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 144 IKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 144 ik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+..|+...++..--+..|..+++.|..+|.
T Consensus 71 i~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 71 LQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344555555555443
No 77
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.63 E-value=5.4 Score=31.36 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
...+.+.......|......|...++++.....+..+.+..|.+++.+++.++..
T Consensus 61 ~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~ 115 (129)
T 2fxo_A 61 QDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555666666666666666666677777777777666654
No 78
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.59 E-value=0.78 Score=43.02 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQPSF 181 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p~~ 181 (236)
.|+.+++.|..+.+.+++|...|+.|..+++.+++.+...|.+
T Consensus 53 ~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~~ 95 (428)
T 4b4t_K 53 KLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLV 95 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 4445555666666677777778888888888888888776643
No 79
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=86.20 E-value=2.6 Score=39.40 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
..|+.++.+|++..++|+++++.++.+..++.++......+..+|.++|+.+.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46888888888888888888888888888888877777778888888888864
No 80
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=86.16 E-value=1.6 Score=31.58 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 127 RSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 127 r~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
.++|++|-+-|..|.+|++-+..+.+.|+.||..|+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 456788888888888888888888888888888776
No 81
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=85.92 E-value=4.6 Score=33.70 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=40.4
Q ss_pred HHHHhHHHHhhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHH
Q 026599 90 RLNDKFVELASILEPGR--PPKTDKAAILIDAVRMVTQLRSEAQKLK-------DSNSSLQEKIKELKAEKNELRDEKQR 160 (236)
Q Consensus 90 kLNerF~eL~slL~P~~--~~K~DKAsIL~dAI~ylkqLr~qv~~Lk-------~~n~~L~eeik~Lk~EknELrdEk~~ 160 (236)
++++.|.+++...+|.. .-++... .+..--.-+..|+.++..|+ ..++.|+.|+..|..+.|.+.+....
T Consensus 43 ~~~~l~~e~~~~~~~~~vs~~~~~~~-~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~k 121 (152)
T 3a7p_A 43 HLNELFQDNSGAIGGNIVSHDDALLN-TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSD 121 (152)
T ss_dssp --------------CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCcccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776663310 0122221 33444445556666666666 45677888888888888888888888
Q ss_pred HHHHHHHHHH
Q 026599 161 LKAEKEKIEQ 170 (236)
Q Consensus 161 Lk~ekekLe~ 170 (236)
|+.|-..|=+
T Consensus 122 Lq~EN~~LV~ 131 (152)
T 3a7p_A 122 LKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887765544
No 82
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=85.89 E-value=5.4 Score=27.02 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
..-+++.++.+++..++.+...+...++.+....+..+++...++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777777888888888888888888888999999999999888764
No 83
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.26 E-value=1.2 Score=33.07 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
.+++.++..|+.+|..|..+|..|+.|...|+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777766666665555544
No 84
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.70 E-value=3.7 Score=35.41 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
|+.++..|+.....+..++..++.++..+..+...+++.+++.+.++
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333
No 85
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=84.56 E-value=0.78 Score=27.84 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKEL 147 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~L 147 (236)
|+-||+.++-+|+-+...|..|++.|
T Consensus 1 yvyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHHHHHhcc
Confidence 34556666665555555454444433
No 86
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.41 E-value=4.3 Score=32.28 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026599 154 LRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 154 LrdEk~~Lk~ekekLe~ql 172 (236)
+..||..|+.++..|+.|+
T Consensus 88 l~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 87
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=84.34 E-value=5.7 Score=30.39 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 137 NSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 137 n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
...|+.+...|..+...|+.|+..+..|++.+.+.++++
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677777777777777777777777777777654
No 88
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=84.30 E-value=7.1 Score=30.89 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 147 LKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 147 Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
+..+...++++...++.++.+++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
T 1c1g_A 249 LEKSIDDLEDELYAQKLKYKAISEE 273 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.76 E-value=20 Score=32.68 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+..+++++.++.|++.++.+...+..++++..+.++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 333444444444444444444444444444443333
No 90
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=83.53 E-value=1.6 Score=31.73 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 144 IKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 144 ik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
|+.|..+..+|..|+..|+.+...|+++|.++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666667777777777777777776543
No 91
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=83.47 E-value=5.3 Score=27.74 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=24.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+.+|......|..++..|+.+.+.|+.+...-|.|-.|-.++|.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444445555555555555566666666666666554
No 92
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=83.47 E-value=5.7 Score=31.23 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
|.-|+...+++++.+..++-+.++...+...++.....|+.+...++.+|+.
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666677777666666666667777777777787777777775
No 93
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.46 E-value=8.9 Score=29.76 Aligned_cols=49 Identities=18% Similarity=0.389 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
.|+.++.+|+.++.....++..|..+..+-+........++.+++++|.
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE 57 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333222233333344444443
No 94
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=82.98 E-value=13 Score=29.52 Aligned_cols=67 Identities=19% Similarity=0.344 Sum_probs=40.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 109 KTDKAAILIDAVRMVTQLRSEAQKLKDSN----SSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 109 K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n----~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+.+|-.++..=-+-|..|+.+++.++.+. ..|...+..|..|..+-|..++....+.+.|..++..+
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444444444555555555555432 34555566677777776666666777777777777764
No 95
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=82.86 E-value=4.6 Score=30.31 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.|-.++.+|+.|+.-|+.|...++.-+.+++..++.
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666666666666666655544
No 96
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=82.86 E-value=2.6 Score=38.65 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
++.=++.|++++.+|+.......++|+.|+.....++...+.|+.++..|+..+.
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445667777777777776666777777777666666666666666666665543
No 97
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=82.71 E-value=3 Score=30.84 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
+=|++..+.++.|+.+.....++|++|+.+.+.+|
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555555555555555555443
No 98
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=82.62 E-value=1.6 Score=30.98 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 141 QEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 141 ~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
++.+.+|..+..+|..||..|+.+++.|.++|.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777778888888888888877764
No 99
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=82.26 E-value=9.4 Score=32.22 Aligned_cols=42 Identities=21% Similarity=0.455 Sum_probs=17.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
+.+|++.+..+...+..+....+||++-...|..++..|+++
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke 70 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKD 70 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333344444444444444444444444333
No 100
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.21 E-value=6.3 Score=32.79 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHh
Q 026599 163 AEKEKIEQQLKAM 175 (236)
Q Consensus 163 ~ekekLe~qlk~~ 175 (236)
.++.+++++|..+
T Consensus 79 ~~~~~ie~ElEeL 91 (154)
T 2ocy_A 79 EEADKLNKEVEDL 91 (154)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555655554
No 101
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=81.79 E-value=4 Score=32.51 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSN----SSLQEKIKELKAEKNELRDEKQRLKAE 164 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n----~~L~eeik~Lk~EknELrdEk~~Lk~e 164 (236)
|++|+++.+..+.++.... ..|.+.+..|..|..+|+.|...|+.+
T Consensus 5 A~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 5 AIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp GTHHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443322 234444444444444444444444443
No 102
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=81.77 E-value=12 Score=29.49 Aligned_cols=52 Identities=25% Similarity=0.278 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKA-------EKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~-------EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
+|-.+--+|+...+.++++..-|+. ...+|..|..+|++|..+|-++=+.+.
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555566666666666555554 333445555555555555555544443
No 103
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.60 E-value=10 Score=30.05 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026599 157 EKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 157 Ek~~Lk~ekekLe~qlk~~ 175 (236)
.-.++..+|+.|+.||..+
T Consensus 84 dREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 84 AREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHH
Confidence 3346777888888888765
No 104
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.46 E-value=6.9 Score=33.65 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026599 153 ELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 153 ELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.|..|...++.++..++.++..
T Consensus 94 aL~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666665555
No 105
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=81.42 E-value=1.5 Score=28.13 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKI 144 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eei 144 (236)
+||..+|++|-.+|..|+.|+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV 23 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEV 23 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHH
Confidence 344444444444444444333
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.20 E-value=5.5 Score=36.43 Aligned_cols=58 Identities=14% Similarity=0.249 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQ----EKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~----eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
.++.+++....+.+++.++.+... ...+....+.+.|++|+.+++.+++++..++...
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 407 SPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 445555555555555544433333 2334455566677777777777777777777654
No 107
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=81.13 E-value=2.5 Score=30.10 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+-..++.+|++-|.+|-+++..|+..+.+. .+||+||...|+..
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le~~c~e~-------eQEieRL~~LLkqH 51 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLEFSCSEK-------EQEIERLNKLLRQH 51 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 345678899999999999988887776664 45677777777754
No 108
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=80.55 E-value=9.5 Score=32.79 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
+++.-+-..+..|+.+|..|+++...|..+.++|..+...+-.+|+.+|.+|
T Consensus 125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666666655555566666666555555555555555544
No 109
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=80.47 E-value=2.2 Score=27.51 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~ee 143 (236)
+.||..+|++|-.+|..|+.+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~e 23 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHH
Confidence 345555555444444444433
No 110
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=80.22 E-value=14 Score=27.84 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
..|++...+++.++..++..+..+.+++..|+.....|.++
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666555555555555444444433
No 111
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.03 E-value=15 Score=28.70 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKE 146 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~ 146 (236)
.+.-+-|..|+.+++.|+..+..|+..+.+
T Consensus 39 ~elrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334444555555555555555555544433
No 112
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=79.89 E-value=15 Score=27.83 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEK 151 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ek 151 (236)
.|++...+++.++..++..+..+.+++..|....
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~ 53 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555555555555555555555555544444333
No 113
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=79.85 E-value=12 Score=35.22 Aligned_cols=75 Identities=9% Similarity=0.125 Sum_probs=47.5
Q ss_pred HhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 93 DKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 93 erF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
+....+....-|+. + -+......++++.+.+.+++.+|+......+++|+.|+...+.++...+.|+.++..|+.
T Consensus 59 ~Lvk~iq~~~~~~Q--~-~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 59 YLIQHIKTIYPSEK--Q-TLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHSCSST--T-CCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccc--C-CCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444443432 2 344445666999999999999998877777777777776666655555555555544443
No 114
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=79.85 E-value=0.75 Score=40.22 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=17.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 133 LKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 133 Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
|.++|+.|.+|+.+|+.+..++ ..|+.|.++|...|.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~----~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEV----ADLKKENKDLKESLD 60 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence 4555656655555555443332 334445555555444
No 115
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=79.75 E-value=2.2 Score=27.53 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 137 NSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 137 n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
+.+|++++.+|-.++.+|.+|..+||.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345666666666666666555555543
No 116
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=79.25 E-value=2.7 Score=27.39 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIK 145 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik 145 (236)
++||..+|++|-.++..|+.++.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~ 25 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVA 25 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHH
Confidence 35555555555555544444433
No 117
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=79.18 E-value=14 Score=34.37 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=48.6
Q ss_pred HHHHHHHhHHHHhhhc-CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HHH-HHHHHHHHHHHH
Q 026599 87 RRDRLNDKFVELASIL-EPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKEL--KAE-KNELRDEKQRLK 162 (236)
Q Consensus 87 RRdkLNerF~eL~slL-~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~L--k~E-knELrdEk~~Lk 162 (236)
|=+.+.++|.+|...+ +|+.-...+++.-|..-..-|+.+-...++++...+.+.+- .+| -.| +.++.+|...|+
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~-~el~~D~e~~~~a~~e~~~l~ 82 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQA-ESLLDDPELKEMAKAEREALL 82 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHH
Confidence 3356778899998866 35432233444333333333333333333333322222211 111 111 234577888999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 026599 163 AEKEKIEQQLKAMSTQP 179 (236)
Q Consensus 163 ~ekekLe~qlk~~~~~p 179 (236)
.+++.++.+|+.+=.|.
T Consensus 83 ~~~~~le~~l~~lLlp~ 99 (354)
T 3d5a_X 83 ARKEALEKELERHLLPK 99 (354)
T ss_dssp HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999865443
No 118
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=79.09 E-value=4.1 Score=26.58 Aligned_cols=25 Identities=32% Similarity=0.483 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKEL 147 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~L 147 (236)
++||..+|++|..++..|+.++.-|
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4566666666665555555444333
No 119
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=78.86 E-value=14 Score=34.72 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIK----------ELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik----------~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
-++|+.+++.|+.+...+..+|. +|+.+..+|+++...|+.+...++.+|..+
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666555655554 344555555555556666666666666653
No 120
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.78 E-value=12 Score=35.80 Aligned_cols=52 Identities=23% Similarity=0.422 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELK------------------AEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk------------------~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
-++|+.+++.|+.+...+..+|..++ .+..+|+++...|+.+...++.+|..
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666655555555554443 33444444444444445555555554
No 121
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=78.75 E-value=16 Score=26.44 Aligned_cols=55 Identities=13% Similarity=0.282 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
.|.+-+.++..++...+.....+.+++..|+.....|.++...........+..|
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555444444444444444444433333
No 122
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.62 E-value=8.5 Score=36.94 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNE 153 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknE 153 (236)
+-|.+|-++-.++..+.+.|+.+.+.+..+..+
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555544443
No 123
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=78.57 E-value=3.9 Score=31.28 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=15.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 131 QKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 131 ~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
..|+.++..|+.++..|+.|..++..|...+|...
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 124
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=78.49 E-value=3.7 Score=28.35 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 144 IKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 144 ik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
+..|+.|..+|+.+...|+.+.+.|..+|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 125
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=78.11 E-value=8 Score=35.41 Aligned_cols=76 Identities=20% Similarity=0.345 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHH-------HHHHHhh-hhHHHHHHHHHHHHHHH
Q 026599 83 REKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEA-------QKLKDSN-SSLQEKIKELKAEKNEL 154 (236)
Q Consensus 83 rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv-------~~Lk~~n-~~L~eeik~Lk~EknEL 154 (236)
.-|.+++.|+.++..|.+.- | +--.|-.-+.+|+++. +.+...+ ..|..| ++++.+++++
T Consensus 21 ~lr~~~eql~~~i~~L~~~a-p----------~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~ 88 (302)
T 3ibp_A 21 ALRQEQEQLQSRIQSLMQRA-P----------VWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLERE-REAIVERDEV 88 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-H----------HHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC-h----------HHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34567788888888887776 4 3345666677777764 3454444 345545 7888888887
Q ss_pred HHHHHHHHHHHHHHHH
Q 026599 155 RDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 155 rdEk~~Lk~ekekLe~ 170 (236)
-..+..|..+|++|-+
T Consensus 89 a~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 89 GARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcC
Confidence 7777777777777665
No 126
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=77.93 E-value=10 Score=28.21 Aligned_cols=37 Identities=5% Similarity=0.261 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
.++.++..|+...+++.--+..|.++++.|..+|..+
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666556667777788887777654
No 127
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=77.91 E-value=17 Score=27.12 Aligned_cols=44 Identities=25% Similarity=0.424 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
|+..-++|+.--..|++.+..|..|.++|......|+...+.|+
T Consensus 30 LrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 30 LKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555556666666666666666666666666555554
No 128
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=77.82 E-value=18 Score=27.34 Aligned_cols=42 Identities=17% Similarity=0.436 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+++++.+.+..|..++.++++... .|..|..|+++++.+++.
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~-------rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEA-------RNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 344444555555555544444333 444455555555555554
No 129
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=77.70 E-value=6.8 Score=36.69 Aligned_cols=89 Identities=19% Similarity=0.339 Sum_probs=49.7
Q ss_pred HHHHHHHhHHHHhhhc-CCCCCCC-------CchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH-H-HHHHHHHHHHHHH
Q 026599 87 RRDRLNDKFVELASIL-EPGRPPK-------TDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQE-K-IKELKAEKNELRD 156 (236)
Q Consensus 87 RRdkLNerF~eL~slL-~P~~~~K-------~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~e-e-ik~Lk~EknELrd 156 (236)
+-+.+.++|.+|...+ +|+.-.. +...+-|...+..+++|+...+.++...+-+.+ + -.++ +.++.+
T Consensus 18 ~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~---~~~a~~ 94 (371)
T 1zbt_A 18 QLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPEL---EEMAKE 94 (371)
T ss_dssp HHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHH---HHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHH---HHHHHH
Confidence 4456778888888755 4542111 334566777777777777766666655544432 1 1111 234577
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC
Q 026599 157 EKQRLKAEKEKIEQQLKAMSTQ 178 (236)
Q Consensus 157 Ek~~Lk~ekekLe~qlk~~~~~ 178 (236)
|...|+.+++.++.+|+.+=.|
T Consensus 95 e~~~l~~~l~~le~~l~~lLlp 116 (371)
T 1zbt_A 95 ELKNSKVAKEEYEEKLRFLLLP 116 (371)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 8889999999999999976433
No 130
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=77.69 E-value=4.1 Score=30.06 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
.|.+|+.++.-++...+.|...+-.-..+...|+.+...|......++
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555555544444444444444444444444444444444333
No 131
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=77.66 E-value=9.9 Score=30.04 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
.++-.-+..|+.++..|...+..|...+++|.+.-+.|
T Consensus 31 ~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 31 AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 44555566666666666666666666666666666655
No 132
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=77.48 E-value=16 Score=35.07 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIK----------ELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik----------~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
-++|+.+++.|+.+...+..+|. +|..+..+|+++...|+.+...++.+|..
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666555555555543 45555556666666666666666666665
No 133
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=77.24 E-value=6.4 Score=37.20 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSS-LQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~-L~eeik~Lk~EknELrdEk~~Lk 162 (236)
.+|+.++.-|+..... |+ .|+-|+....+++.+.++|.
T Consensus 116 ~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443322 22 44444444444444444443
No 134
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.13 E-value=13 Score=31.76 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKEL 147 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~L 147 (236)
+..|+.++..|...+..|...|.+|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 135
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=76.83 E-value=17 Score=27.24 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhhHHHH
Q 026599 127 RSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 127 r~qv~~Lk~~n~~L~ee 143 (236)
-.+++.|-.+|.+|.+-
T Consensus 8 gkevEnLi~EN~eLl~T 24 (77)
T 2w83_C 8 GREVENLILENTQLLET 24 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444455555544443
No 136
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.77 E-value=15 Score=28.88 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKI 144 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eei 144 (236)
+.-+-|..|+.+++.|+..+..|+..+
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333444445555555554444444443
No 137
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=76.71 E-value=4.8 Score=25.36 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 144 IKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 144 ik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
|..|++|...|+.|...||-|+.-|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 138
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=76.61 E-value=8.9 Score=27.19 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026599 155 RDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 155 rdEk~~Lk~ekekLe~qlk~ 174 (236)
+.|...|+..+..|+.+|.+
T Consensus 55 k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555544
No 139
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.60 E-value=7.9 Score=45.02 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
.|++++..|+.+.+++..|++.|+.+.+
T Consensus 2039 ~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2039 ALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333
No 140
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=76.46 E-value=4.3 Score=26.03 Aligned_cols=21 Identities=0% Similarity=0.156 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKI 144 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eei 144 (236)
+||..+|++|-.+|..|+.|+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHH
Confidence 455555555554444444443
No 141
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=76.28 E-value=9.4 Score=26.50 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
|++++..+..|+.+...+..++.....|..+|-+=|..|..||.--..-|.
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 356677777777777777777777777888888888888888765544443
No 142
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=76.19 E-value=9.6 Score=26.39 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
|.+|-.+|+.|......|..++..|+.+....++|-.+--..+
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677778888888888888887777777776666655544443
No 143
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.99 E-value=23 Score=28.46 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
..|+.||+.|+.+..+.-.|..+|+.+.+.+.
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 33344444444333333333333333333333
No 144
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=75.76 E-value=21 Score=26.63 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=19.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 131 QKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 131 ~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+.|+.....|.+--..|..-.++|.+|...|..+++.|....+.
T Consensus 28 ~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 28 NALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444555555555555544443
No 145
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=75.41 E-value=9.7 Score=28.87 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 136 SNSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 136 ~n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
+|..|.+++..+..|.+.|+.||..|+
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 146
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=75.40 E-value=14 Score=34.21 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=52.9
Q ss_pred HHHHHhHHHHhhhc-CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 89 DRLNDKFVELASIL-EPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 89 dkLNerF~eL~slL-~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
..|++-|..|..+- .|. ...-+..+|..|-.+..+++.-.+.|++....+..+|+....+.|.|-++...|-.+|.
T Consensus 44 ~~l~~ff~alq~la~~P~--~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~ 120 (463)
T 2d4y_A 44 GSLQSFFTSLQTLVSNAE--DPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQIS 120 (463)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888887 344 24567889999888888888877777776666777776666666666555554444443
No 147
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=75.15 E-value=3.6 Score=26.53 Aligned_cols=21 Identities=5% Similarity=0.091 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~ee 143 (236)
++||..+|++|-.++..|+.|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~E 23 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 345555555554444444443
No 148
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=75.07 E-value=3.7 Score=26.30 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026599 151 KNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 151 knELrdEk~~Lk~ekekLe~ql 172 (236)
..||..+|+.|..|+.+|..-|
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 3445555555556666655433
No 149
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=74.34 E-value=4.2 Score=26.19 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 137 NSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 137 n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
+.+|++++.+|-.++.+|.+|-.+||
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34566666666666666555555554
No 150
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=74.17 E-value=2.8 Score=28.95 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 143 KIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 143 eik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
-+.+|..+...|..||..|+.++..|++++
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666667777788888888888777654
No 151
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=73.99 E-value=6.6 Score=30.26 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Q 026599 115 ILIDAVRMVTQLRSEAQKL--KDSNSSLQEKIK-ELKAEKNELRDEKQRLKA--EKEKIEQQLKAM 175 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~L--k~~n~~L~eeik-~Lk~EknELrdEk~~Lk~--ekekLe~qlk~~ 175 (236)
|+.....-|.+|+..+.+| +.....|+..+. +|....+.|+.+...|-. +++||-.++..+
T Consensus 11 li~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l 76 (97)
T 1hs7_A 11 LIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNL 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 4444555555666655555 234556666666 666666666666664444 677777766653
No 152
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=73.88 E-value=5.4 Score=25.53 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhhhhHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~ee 143 (236)
+||..+|++|-.++..|+.|
T Consensus 3 nQLEdKVEell~~~~~le~E 22 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNE 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHH
Confidence 44444444444444433333
No 153
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=73.65 E-value=2.7 Score=30.69 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026599 143 KIKELKAEKNELRDEKQRL 161 (236)
Q Consensus 143 eik~Lk~EknELrdEk~~L 161 (236)
++..||.++-.|+||...+
T Consensus 45 ~l~~LKk~KL~LKDeI~~l 63 (76)
T 1zhc_A 45 EVSHMKKQKLKLKDEIHSM 63 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3444444444444444433
No 154
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=73.63 E-value=8.3 Score=28.28 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 145 KELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 145 k~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+.|..+..+|..|+..|+.+++.|.++|.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444443
No 155
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=73.54 E-value=3.8 Score=26.43 Aligned_cols=25 Identities=4% Similarity=0.283 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKEL 147 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~L 147 (236)
++||..+|++|-.+|..|+.|+.-|
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4566666666666665555554433
No 156
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=73.38 E-value=30 Score=26.94 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
|..|-+.+.+-..++.--......|...++.-+....+-......|+.||..|+++|+-
T Consensus 27 LT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 27 LTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444455555443333222222233455666677777777665
No 157
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=73.36 E-value=2.4 Score=25.89 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKE 146 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~ 146 (236)
+|+.+..+|+++...|+-||..
T Consensus 4 rlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 158
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=73.35 E-value=17 Score=33.87 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 123 VTQLRSEAQKLKDSNSSLQ--------EKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~--------eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
-++|+.+++.|+.+...+. ++..+|+.+..+|+++...|+.+...++.+|..+
T Consensus 37 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 37 VQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555544433333 3345667777777777777777777777777763
No 159
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=73.15 E-value=26 Score=26.06 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.++-||++...-+.++..|++.++--......|.||.-.|.-|..-|++.|..
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 55666666666666666676665544444445677777776666666666654
No 160
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=73.13 E-value=9.5 Score=25.53 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhhhHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQE 142 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~e 142 (236)
|++|+.-+|+|++.|..|..
T Consensus 5 vkelknyiqeleernaelkn 24 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKN 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHh
Confidence 57777777777777765543
No 161
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=73.03 E-value=14 Score=29.65 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
..|..+++.|+..|..|+++++++..+...|
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555555444443
No 162
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=73.01 E-value=13 Score=32.26 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=30.7
Q ss_pred HHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 97 ELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 97 eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
-|-++++|... -++-++.+.||+.+.-..-.+...|+..+.+|.+|.++|+.
T Consensus 14 ~~~~~~~~~~~--------~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~ 65 (206)
T 3oa7_A 14 ILNKLLDPELA--------QSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRS 65 (206)
T ss_dssp HHHHHHCTTCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHhhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 36677888752 35666777777776655555555555555554444444443
No 163
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.67 E-value=5.2 Score=31.36 Aligned_cols=75 Identities=12% Similarity=0.222 Sum_probs=35.4
Q ss_pred HHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 026599 92 NDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD----EKQRLKAEKEK 167 (236)
Q Consensus 92 NerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd----Ek~~Lk~ekek 167 (236)
+.+|.+|...+.-. ..-|..+-.=|.+|+..++.|+.+...+......|.....++.. +...+...+..
T Consensus 14 ~~K~eel~~~~~~~-------~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~ 86 (129)
T 3tnu_B 14 QTKYEELQQTAGRH-------GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAE 86 (129)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666655111 12244556678888888888888888887777777766555433 22334444444
Q ss_pred HHHHHH
Q 026599 168 IEQQLK 173 (236)
Q Consensus 168 Le~qlk 173 (236)
|+.+|.
T Consensus 87 lE~eL~ 92 (129)
T 3tnu_B 87 LEEALQ 92 (129)
T ss_dssp HHHHHH
T ss_pred HHHhHH
Confidence 554443
No 164
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=72.42 E-value=19 Score=26.51 Aligned_cols=45 Identities=31% Similarity=0.461 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 128 SEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 128 ~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
..++.|..+++.|...++....+...+++|-....+.+.+++.+|
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L 48 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQL 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333333333444433
No 165
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=72.27 E-value=5 Score=26.17 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
.+|+.++.+|..++.+|.+|-.+||
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455555555555555444444443
No 166
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=72.15 E-value=8.6 Score=25.82 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=19.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
+.+|+.....|+....+|....+-|..||+.|++
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455555555665555565555555556655554
No 167
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=72.08 E-value=5.2 Score=25.62 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
.+|++++.+|-.++.+|.+|..+||
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455566566555556555555554
No 168
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=71.96 E-value=12 Score=28.45 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 026599 137 NSSLQEKIKELKAEKNELRDEKQRL 161 (236)
Q Consensus 137 n~~L~eeik~Lk~EknELrdEk~~L 161 (236)
|..|.+.|..|..|.+.|+.++..|
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 169
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=71.61 E-value=23 Score=27.35 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026599 160 RLKAEKEKIEQQLKA 174 (236)
Q Consensus 160 ~Lk~ekekLe~qlk~ 174 (236)
++..+|+.|+.+|..
T Consensus 65 kl~~eKe~L~~ql~~ 79 (94)
T 3jsv_C 65 KLVEKKEYLQEQLEQ 79 (94)
T ss_dssp HHHHTTSHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 344444444444444
No 170
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=71.49 E-value=5.5 Score=25.52 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
.+|+.++.+|..++.+|.+|..+|+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3566666666666666655555554
No 171
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.20 E-value=3.4 Score=31.00 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 136 SNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 136 ~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
+.+.|.+.|++|....++|..||..||.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666677777777776
No 172
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=71.18 E-value=31 Score=26.05 Aligned_cols=20 Identities=5% Similarity=0.177 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhhhHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKI 144 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eei 144 (236)
+|..+-..|..++..++.+.
T Consensus 29 ~lEke~~~l~~el~~le~E~ 48 (96)
T 3q8t_A 29 DVEKNRKVVAENLEKVQAEA 48 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 173
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=70.96 E-value=14 Score=27.10 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
++++..+..|+.+...+..++.....|..+|-+=|..|..||.
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3334444444444444444444444444444444444444443
No 174
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=70.58 E-value=16 Score=26.70 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
.+++..+..|+.+...+..++.....|..+|-+=|..|..||.--...|.
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666655556666666666666666655444443
No 175
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=70.29 E-value=6 Score=25.51 Aligned_cols=21 Identities=5% Similarity=0.237 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~ee 143 (236)
++||..+|++|-.++..|+.|
T Consensus 3 MnQLEdKvEeLl~~~~~L~~E 23 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNE 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHH
Confidence 345555555544444444433
No 176
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=70.24 E-value=6 Score=25.50 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 143 KIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 143 eik~Lk~EknELrdEk~~Lk~ekek 167 (236)
++....+++++|+..|..|..|+--
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555543
No 177
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=70.21 E-value=12 Score=28.87 Aligned_cols=61 Identities=11% Similarity=0.247 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
|...|.-++...++++-|+....-..+.-..-+.....+..|+..|..+...|+.++..++
T Consensus 28 lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 28 LKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444433333222233333344556666677777777766655543
No 178
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=70.00 E-value=31 Score=25.64 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIK 145 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik 145 (236)
-|.+|+.+|.+|+-.++.+..++.
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333333333333333333
No 179
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=69.88 E-value=5.1 Score=25.81 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 137 NSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 137 n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
+.+|++++.+|-.++.+|.+|..+||.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 345666666666666666666665553
No 180
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=69.82 E-value=31 Score=25.51 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 026599 153 ELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 153 ELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+..+....|.+.+-.|+.+|+-+
T Consensus 60 eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 60 QLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666654
No 181
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=69.69 E-value=29 Score=25.59 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
+.+++..+..|+.+...+..++.....|+.+|-+=|..|..||.--
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatY 75 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444555555555555555555555556666666666666665443
No 182
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=69.43 E-value=11 Score=35.13 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
-|.+|++++++|+.++..++.++++++.+..+...+...|..++..+...|+.
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 35677888888888888888888888877766666667788888887777766
No 183
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.10 E-value=17 Score=31.34 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
.|..|+.++..|.++++..+.||+.|+.+...|+..
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666665555555555554444433
No 184
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=69.02 E-value=15 Score=27.51 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 136 SNSSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 136 ~n~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
+|..|-.+|..+..|.+.|++||..|+
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 185
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=68.90 E-value=13 Score=27.62 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026599 147 LKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 147 Lk~EknELrdEk~~Lk~ekekL 168 (236)
+..++++|+.++..|+.++..|
T Consensus 64 l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 64 LISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455555555544443
No 186
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=68.88 E-value=4.9 Score=39.54 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 139 SLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 139 ~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.|+..|.+|+.+.++--.-+..|+..++++-.+||.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666664334444554444444433333
No 187
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=68.79 E-value=35 Score=25.77 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAE 150 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~E 150 (236)
+++..+..+++.++..|+..+..|..+
T Consensus 33 k~~e~~~~~~E~Ei~sL~kk~~~lE~e 59 (101)
T 3u1c_A 33 KAAEERSKQLEDDIVQLEKQLRVTEDS 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 188
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=68.71 E-value=22 Score=33.42 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHh
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKN----------ELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn----------ELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
++-|.+|-++-.++..+.+.|+.+.+.+..+.. +|..+...|+.++..|+.+++.+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEEL 95 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544433 23334444444555555544443
No 189
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=68.62 E-value=18 Score=31.52 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=24.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 135 DSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 135 ~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
++|..|.++|..|..|++.|+.||..|+.=.+.++..
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~l 151 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYM 151 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777776655554443
No 190
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.39 E-value=10 Score=24.65 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
.+|+.++.+|-.++.+|.+|-.+|+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555555555555555554444443
No 191
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=68.23 E-value=7.9 Score=28.18 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 129 EAQKLKDSNSSLQEKIKELKA------EKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~------EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+..+|.++...|..+|..+.. +..+|+.++..||.++.++-.+.+
T Consensus 18 ~f~~L~~eH~~LD~~I~~le~~~~~~~~l~~LKk~KL~LKDeI~~lL~~~~ 68 (76)
T 1zhc_A 18 HFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYR 68 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444555555555554433 444556666666666655544433
No 192
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=68.18 E-value=21 Score=26.77 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
|.+|..=-++|+.++..++.++..|.++++.|+
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666666665555444
No 193
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.12 E-value=5 Score=37.67 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=24.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026599 133 LKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQPS 180 (236)
Q Consensus 133 Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p~ 180 (236)
|+.....|+.+++.++.|...+..|+..++.++..++.+++.+...|-
T Consensus 30 l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p~ 77 (434)
T 4b4t_M 30 LQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPY 77 (434)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 333444455556666666666666666777777777777776665553
No 194
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=68.08 E-value=28 Score=25.85 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=35.6
Q ss_pred HHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026599 88 RDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKN 152 (236)
Q Consensus 88 RdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn 152 (236)
-..+|+++.++++-- |.. ..+|..||. |+.+-.+|...-++.......+++++..|....+
T Consensus 32 A~~vd~~~~~i~~~~-~~~--~~~r~~vma-ALnladel~~~~~~~~~~~~~~~~~i~~L~~~le 92 (104)
T 1t3u_A 32 ARYLDGKMREIRSSG-KVI--GADRVAVMA-ALNITHDLLHRKERLDQESSSTRERVRELLDRVD 92 (104)
T ss_dssp HHHHHHHHHHHHTTT-CSC--SHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCC--CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999987 654 456666553 5565555554444333334444444444444433
No 195
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=67.94 E-value=4.3 Score=35.37 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
.+.+..+..|+++.++|+++|..|+.+.. +..+|+.||.+|+...
T Consensus 15 ~~~~~~~~~l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 15 VDGVVDLKNTYTENQHLKERLEELAQLES----EVADLKKENKDLKESL 59 (255)
T ss_dssp -----------CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 34555666777788888888887776643 3346666777776643
No 196
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=67.43 E-value=37 Score=25.46 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAE 150 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~E 150 (236)
++..+..+++.++..|+..++.|..+
T Consensus 34 ~~e~~~~~~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 34 QAEDRCKQLEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433333
No 197
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.29 E-value=22 Score=32.26 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHh
Q 026599 122 MVTQLRSEAQKLKDS 136 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~ 136 (236)
+.+.||+++.++++.
T Consensus 398 ~~~~~~~~~~~~~~~ 412 (471)
T 3mq9_A 398 VTHLLQQELTEAQKG 412 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 334456666665543
No 198
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=67.18 E-value=12 Score=34.31 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 128 SEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 128 ~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
..+++|.++..+|+..+.....++..|+.....+++.+.+|+++|..
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~ 51 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVD 51 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555565555555566666666666666666666665544
No 199
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=67.11 E-value=6.9 Score=25.22 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIK 145 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik 145 (236)
++||..+|++|-.+|..|+.++.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~ 25 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHH
Confidence 35555555555555554444433
No 200
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.76 E-value=18 Score=33.42 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
-+-|+.|+++.++|+++++.++.++++++....+...+...|..++..|...|+.+
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 34577888999999999999999999988777766666778888888887777763
No 201
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.41 E-value=26 Score=33.68 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKA 149 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~ 149 (236)
|.+|-++-.++..+.+.|+.+.+.+..
T Consensus 35 ~~~ld~~~r~~~~~~~~l~~~rn~~sk 61 (485)
T 3qne_A 35 IIAEYKEWVKLRFDLDEHNKKLNSVQK 61 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 202
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=66.07 E-value=29 Score=27.23 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
|.=+|+-|+...+.+++....++.|..|...|...+|-....|+.++..+.
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888888888888888888887788888888888888887653
No 203
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=66.04 E-value=11 Score=28.49 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKEL 147 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~L 147 (236)
|.+|..=-++|+.++..+++++..|.++..+|
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555444444444444333
No 204
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=65.93 E-value=24 Score=32.92 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhHHHHhhhc-CCC
Q 026599 84 EKLRRDRLNDKFVELASIL-EPG 105 (236)
Q Consensus 84 ER~RRdkLNerF~eL~slL-~P~ 105 (236)
...+-+.+.++|.+|...+ +|+
T Consensus 23 ~~~~l~~~~~r~~el~~~~~~p~ 45 (365)
T 1gqe_A 23 GYLDYDAKKERLEEVNAELEQPD 45 (365)
T ss_dssp HHTTHHHHHHHHHHHHHHHHSGG
T ss_pred HhcCHHHHHHHHHHHHHHhcCCc
Confidence 3445667788888888755 454
No 205
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.74 E-value=28 Score=31.58 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 026599 160 RLKAEKEKIEQQLK 173 (236)
Q Consensus 160 ~Lk~ekekLe~qlk 173 (236)
.|..|+.+|+++|+
T Consensus 447 ~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 447 ELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 206
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=65.64 E-value=22 Score=26.93 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 026599 152 NELRDEKQRLKAE 164 (236)
Q Consensus 152 nELrdEk~~Lk~e 164 (236)
.+|.++..+.+..
T Consensus 61 ~~le~~i~rhk~~ 73 (84)
T 1gmj_A 61 ERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 207
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=65.62 E-value=38 Score=28.46 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=48.9
Q ss_pred chhhhHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 026599 111 DKAAILID---AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQ 178 (236)
Q Consensus 111 DKAsIL~d---AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~ 178 (236)
.+.+|+.. -...|+.|+..-++|.+.........++|..+.|.|+-|...|...+++.-.-|+..++.
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~Gv~ 160 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGAR 160 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44555443 234455666677777777777777788888889999999999988888888777776553
No 208
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=65.32 E-value=24 Score=25.81 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 026599 127 RSEAQKLKDSNSSLQEKIKELKAEK 151 (236)
Q Consensus 127 r~qv~~Lk~~n~~L~eeik~Lk~Ek 151 (236)
+.+.+.|...++.|+.++..|..+.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 209
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=65.14 E-value=27 Score=30.56 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=52.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 110 TDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 110 ~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
.+...|..-....++.++++...|.+..+.+++|++.+++...+.|...+.++.+-+++--++
T Consensus 160 asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEV 222 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 466778888888899999999999999999999999999998898888888888777654443
No 210
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=65.07 E-value=18 Score=26.90 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=26.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 109 KTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 109 K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
..+.+-|..+--+++..|..+.+.++.....|+..+.++..+.+++
T Consensus 58 ~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 58 TVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp EETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666665555555555544444443
No 211
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=64.88 E-value=17 Score=31.29 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=36.0
Q ss_pred CCchhhhHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 109 KTDKAAILIDA-VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 109 K~DKAsIL~dA-I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
.++++-+|-.- +.-+..|..+++...++++.|++++..++.......+.+..-...++-.+.-+.-+
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~L 81 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYL 81 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHc
Confidence 45555555433 33356667777777777777777777777766665555554444444444444443
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.85 E-value=8.9 Score=35.84 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
.|....+++|+.+.+-|+.+++.++++ .+.++.|...++.|+++++
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~-------~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDE-------QRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHc
Confidence 344444555555555555555444444 4444445455555555544
No 213
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=64.25 E-value=35 Score=26.87 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 137 NSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 137 n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
...|++++++|..-...|.......+....+.+.++..
T Consensus 90 ~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~ 127 (142)
T 3gp4_A 90 RIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKD 127 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333344444433333333333333333333444433
No 214
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=64.22 E-value=28 Score=33.81 Aligned_cols=70 Identities=11% Similarity=0.245 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHH
Q 026599 82 CREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDS----NSSLQEKIKELKAEKN 152 (236)
Q Consensus 82 ~rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~----n~~L~eeik~Lk~Ekn 152 (236)
.-.|..| .++.++.+|+..|+.....-.+=-.......+++++-+.+++..+.. .+.|+..|.+|+.-.+
T Consensus 55 lL~kqer-dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd 128 (491)
T 1m1j_A 55 IIDDTDQ-NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVA 128 (491)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhh-hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 34456666666663322123344455556666666666666555532 2345555555555554
No 215
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=63.66 E-value=9.7 Score=24.52 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
.+|+++..+|-.++.+|.+|..+||
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3555565555555555555555554
No 216
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=63.44 E-value=51 Score=27.49 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026599 142 EKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQP 179 (236)
Q Consensus 142 eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p 179 (236)
..|+.|..|..+||.+.. .+..+.+.+++.-.+++
T Consensus 113 akI~aL~~Ei~~Lr~qL~---~~R~k~~~em~KeGip~ 147 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLD---EQRVKRDVAMAQAGIPR 147 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCC
Confidence 456777777777765433 33444555554334443
No 217
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=63.21 E-value=4.2 Score=27.68 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKI 144 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eei 144 (236)
.||.+|+.+++.|+..+..|+..+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888777776543
No 218
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=63.07 E-value=17 Score=33.80 Aligned_cols=51 Identities=25% Similarity=0.477 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKE----------LKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~----------Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
++|+.+++.|+.+...+..+|.. |+.+..+|+++...|+.+...++.+|..
T Consensus 40 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 40 REIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554445444432 3344444555555555555555555555
No 219
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=62.91 E-value=27 Score=26.44 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 144 IKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 144 ik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
.+.|..+...|++|+..||.+.+.|.
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555554444443
No 220
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=62.76 E-value=26 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKN 152 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~Ekn 152 (236)
.|++-...|-.....|+....++.+|+.
T Consensus 8 kLKe~n~~L~~kv~~Le~~c~~~eQEie 35 (48)
T 3vmx_A 8 RLKQINIQLATKIQHLEFSCSEKEQEIE 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3333333333333333333333344433
No 221
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=62.68 E-value=4 Score=35.72 Aligned_cols=19 Identities=5% Similarity=0.100 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 026599 113 AAILIDAVRMVTQLRSEAQ 131 (236)
Q Consensus 113 AsIL~dAI~ylkqLr~qv~ 131 (236)
.-||+--|.|++-=.++..
T Consensus 123 ~~iLSalINF~~FRE~~~~ 141 (250)
T 2ve7_C 123 SRFLSGIINFIHFREACRE 141 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777774444333
No 222
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=62.67 E-value=27 Score=24.91 Aligned_cols=52 Identities=29% Similarity=0.473 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSN---------SSLQEKIKELKAEKNELR--DEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n---------~~L~eeik~Lk~EknELr--dEk~~Lk~ekekLe~qlk~ 174 (236)
++-|.+.+..|++.. +.|...-.+|+....||- -|......|..+|+.+++.
T Consensus 4 vkaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 445555555555433 333333444555555542 2455667777888887764
No 223
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=62.63 E-value=36 Score=24.80 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
|..+.+.+......|+.++..++.+......|-+.|-.=|..|+.+|-.
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIat 51 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777777777777776666777777777788877765
No 224
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=62.27 E-value=36 Score=29.91 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAE-KNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~E-knELrdEk~~Lk~ekekLe~qlk 173 (236)
--+.+.+|+.++++|+.....+..+++.+... ...|..=...++.++.+.+..-.
T Consensus 224 p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 279 (357)
T 3rrk_A 224 LGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVAD 279 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566788888888888888888888777766 55566666666666666665443
No 225
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=62.14 E-value=27 Score=30.48 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKE 146 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~ 146 (236)
|.+|+.=-++|+.++..|++++..|.++..+
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~e 140 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKE 140 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444444444333
No 226
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=62.10 E-value=42 Score=24.22 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 148 KAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 148 k~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
..+...|...++.|..+.++.+.+|.
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444
No 227
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.09 E-value=26 Score=40.93 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHh
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQ--------------RLKAEKEKIEQQLKAM 175 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~--------------~Lk~ekekLe~qlk~~ 175 (236)
..|-.-++++++++++|++..+.|+++..+...|+.+|++|.. .|..|+.|++++++.+
T Consensus 2024 ~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 4455566666677777777777777776666666666665543 3556666766666553
No 228
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=62.08 E-value=13 Score=24.87 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAE 150 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~E 150 (236)
-..+++.+|..+.+.|++....|+.++..|...
T Consensus 6 ~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 6 IMYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888777666544
No 229
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=61.73 E-value=15 Score=31.36 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKN 152 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn 152 (236)
+|..|-.+++.|+.+|..|+++..-|+.|-|
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444444333333333
No 230
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=61.69 E-value=11 Score=24.24 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
.+|+.++.+|-.++.+|.+|-.+|+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455555555555555554444444
No 231
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=61.68 E-value=15 Score=29.16 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 149 AEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 149 ~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
....+|.++...|+..+..|+..+.
T Consensus 102 ~~~~~l~~~i~~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 102 QQEANVLQLIQDTEKNLKKIQQKIA 126 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 232
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=61.35 E-value=29 Score=25.79 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 141 QEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 141 ~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+++.+.-..|+..|++....--...|+|..+|=+
T Consensus 24 r~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiis 57 (75)
T 3a7o_A 24 QKELKSKEQEIRRLKEVIALKNKNTERLNDELIS 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHH
Confidence 3333333333334443333333444444444433
No 233
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.20 E-value=35 Score=31.69 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEK--------NELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ek--------nELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
++-|.+|-++-.++..+.+.|+.+.+.+..+. .+|..+...|+.++..++.+++.+.
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKE 91 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666777777777777666655432 3455566666666666666666643
No 234
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=60.98 E-value=12 Score=33.59 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=16.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 129 EAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
+++.|++++..|++|+.+|+.+++.++.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5566666666666666666555554443
No 235
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=60.12 E-value=29 Score=26.23 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKA 149 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~ 149 (236)
+|+.+++.|+++...|+.++..++.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444443
No 236
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=59.83 E-value=28 Score=25.03 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=24.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 133 LKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 133 Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
+|.....-+.+|..|-...|.|.+|...+..++.+|+.+
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 444444555566666666677777777777766666654
No 237
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=59.65 E-value=53 Score=26.96 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
+..|++-|.+|+.++.+++... ..+|..++. ....+...|+.+++.|+..|+.+
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~---n~eI~~ik~---~~~~~~~~l~~~i~~l~~~l~~y 71 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQM---NEAIDAAKA---RASQKSAPLLARRKELEDGVATF 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888877643 344544443 33456678888999999888884
No 238
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=59.62 E-value=36 Score=24.98 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
|...++.|..+++.|...++.+..+...+
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~ 32 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLE 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544444444444333
No 239
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=59.46 E-value=34 Score=25.30 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 140 LQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 140 L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
|.+.+..+..+...|......+..+..+++.+|..+
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555666666666666664
No 240
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.23 E-value=23 Score=26.67 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
..++.++++.+..|..|..+++.|+.+..+|+.+
T Consensus 41 i~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 41 QNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444556666677777877777777776666544
No 241
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=58.84 E-value=83 Score=29.72 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=42.5
Q ss_pred HhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 93 DKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 93 erF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
+.+..|+....|...++.+. ...+++|=+.+.+++.+++..+......|.+|+...+-.+...+.|+..+
T Consensus 59 ~~v~~ik~~~~~~q~~~~~n---~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v 128 (411)
T 3ghg_C 59 QLIKAIQLTYNPDESSKPNM---IDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKV 128 (411)
T ss_dssp HHHHHHHHHHCTTTCCCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccCCCCcc---hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566664443223332 46678888888888888888777777777777765544444444444433
No 242
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=58.74 E-value=9.4 Score=24.56 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKEL 147 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~L 147 (236)
..+..+++|+..|..|+++|+.|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 44555666666666666665543
No 243
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.70 E-value=28 Score=27.23 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
+++..+..|+.+...+..++.....|+.+|-+=|..|..||
T Consensus 81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444544444454444
No 244
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=58.62 E-value=63 Score=25.21 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQ----RLKAEKEKIEQQLK 173 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~----~Lk~ekekLe~qlk 173 (236)
=+.+.+.+++|..+|..||.....+..+.+.-.+|.+..-..-. +...+|.+|..-++
T Consensus 37 E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ire~fq 98 (101)
T 4aj5_1 37 EDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQ 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46788999999999999998777666665555555555433332 23445555555444
No 245
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=58.59 E-value=17 Score=22.81 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhhHHHHHH
Q 026599 127 RSEAQKLKDSNSSLQEKIK 145 (236)
Q Consensus 127 r~qv~~Lk~~n~~L~eeik 145 (236)
+.++..|+++...|.-||.
T Consensus 8 kqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 246
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=58.35 E-value=49 Score=31.71 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=18.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 148 KAE-KNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 148 k~E-knELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
..+ ..+|+++...|+.+...++.++...
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5566666667777777777777663
No 247
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=58.27 E-value=45 Score=23.41 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 143 KIKELKAEKNELRDEKQRLKAEKEKI 168 (236)
Q Consensus 143 eik~Lk~EknELrdEk~~Lk~ekekL 168 (236)
+++..+.|..|||...+.|..|++.+
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666667777777777776654
No 248
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=58.21 E-value=26 Score=29.78 Aligned_cols=34 Identities=9% Similarity=0.277 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKEL 147 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~L 147 (236)
.||.-+++-+..|+.++++|.++|+.|+.+-...
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777777777777777765443
No 249
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=57.97 E-value=0.33 Score=38.35 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 145 KELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 145 k~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
..|..++..|..|+..|+.|++.+..++
T Consensus 68 ~~L~~e~e~L~~En~~l~~E~~~lk~k~ 95 (107)
T 3a5t_A 68 AELQQEVEKLASENASMKLELDALRSKY 95 (107)
T ss_dssp TTTSSTTTTTTSTTSHHHHTTTSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433333
No 250
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=57.89 E-value=54 Score=24.19 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
|++||.++..+..++..|.-+++.++.....+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf 33 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRL 33 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45677777777776666666655544444333
No 251
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=57.85 E-value=35 Score=27.41 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=0.0
Q ss_pred HHhHHHHhh
Q 026599 92 NDKFVELAS 100 (236)
Q Consensus 92 NerF~eL~s 100 (236)
++|+.+|+.
T Consensus 8 kDRl~eL~~ 16 (180)
T 1s94_A 8 KDRLAALKA 16 (180)
T ss_dssp ---------
T ss_pred hHHHHHHhc
Confidence 455555555
No 252
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=57.84 E-value=27 Score=32.38 Aligned_cols=57 Identities=19% Similarity=0.373 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhh
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNE----------LRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknE----------LrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
++-|.+|-++-.++..+.+.|+.+.+.+..+... |..+...|+.++..++.+++.+.
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVE 95 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777777777777766543 34556667777777777777653
No 253
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=57.73 E-value=26 Score=29.48 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=21.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
-+.|......|+.++..|..++.+|..+...|+.++.+++.-+
T Consensus 51 ~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 51 HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555444433
No 254
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=57.63 E-value=79 Score=25.98 Aligned_cols=67 Identities=10% Similarity=0.200 Sum_probs=41.1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 109 KTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKE-------------LKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 109 K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~-------------Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
..-|.-++..--.-+.+|..+.+.|+-+-..+..+++. +..-...+..|++.+...+..|..+++.+
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv 103 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQV 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666777777777776655555444432 11112344557777888888888887774
No 255
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=57.62 E-value=19 Score=22.63 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
.+|..++.+-+.+|-+|+.++..|.
T Consensus 4 aqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4555555555555555555544443
No 256
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=57.60 E-value=68 Score=28.09 Aligned_cols=18 Identities=6% Similarity=0.062 Sum_probs=8.5
Q ss_pred HHHHHHHHHhHHHHhhhc
Q 026599 85 KLRRDRLNDKFVELASIL 102 (236)
Q Consensus 85 R~RRdkLNerF~eL~slL 102 (236)
.+|=+.+=.++..+...|
T Consensus 62 ~~~~~~~~~k~~~~~~~L 79 (357)
T 3rrk_A 62 LKRWEAVVSQAEQSLTVV 79 (357)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHh
Confidence 333333444555555555
No 257
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=57.53 E-value=64 Score=24.94 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIK 145 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik 145 (236)
||.+||.++..+..++..|+-++.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leld 44 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERD 44 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 258
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=57.31 E-value=20 Score=28.18 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKN 152 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~Ekn 152 (236)
+.+.++++|.+++..|...+..|..|++
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 259
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.07 E-value=24 Score=33.39 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=28.2
Q ss_pred HHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHH
Q 026599 91 LNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKD----SNSSLQEKIKELKAEKN 152 (236)
Q Consensus 91 LNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~----~n~~L~eeik~Lk~Ekn 152 (236)
+..++.+|+..|+--...-.+=-.......+++++-+++++..+. -.+.|+..|.+|+..++
T Consensus 65 ~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~ 130 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVI 130 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666655322111222233444455555555555444432 22344555555555444
No 260
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=56.69 E-value=43 Score=22.62 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=22.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
+.+|+.+..+|+.|...|+..--.-+|-..-|..|+..|...+
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666555432222333444555555554433
No 261
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=56.69 E-value=8.7 Score=29.53 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026599 154 LRDEKQRLKAEKEKIEQQLKAMSTQPS 180 (236)
Q Consensus 154 LrdEk~~Lk~ekekLe~qlk~~~~~p~ 180 (236)
|+++...|+.++++++.+|+.+..+|.
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~~~P~ 38 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLRSPPL 38 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 444445556666677777777777774
No 262
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=56.00 E-value=13 Score=25.67 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKI 144 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eei 144 (236)
+|.++....+.|..+|..|.+++
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~ 50 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKV 50 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 263
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.90 E-value=58 Score=25.33 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=26.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 110 TDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 110 ~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
-+|.++|...+. .+.+++.|+.++.+|+..+.+...-..|+..+++.|+.
T Consensus 4 ~e~~~~~~~~~~----~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~ 53 (125)
T 1joc_A 4 DERRALLERCLK----GEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQI 53 (125)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 355666655554 33345555555555555555444444456555555543
No 264
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=55.73 E-value=20 Score=23.09 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~ee 143 (236)
++||..+|++|-.++..|+.|
T Consensus 3 MnQledKvEel~~~~~~l~nE 23 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHH
Confidence 344555444444444433333
No 265
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=55.70 E-value=46 Score=31.90 Aligned_cols=21 Identities=5% Similarity=0.207 Sum_probs=13.5
Q ss_pred HHH-HHHHHHHHHHHHHHHHHh
Q 026599 155 RDE-KQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 155 rdE-k~~Lk~ekekLe~qlk~~ 175 (236)
..| ...|+.++..|+.+++.+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~ 130 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQL 130 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 555 566666676777666664
No 266
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=55.54 E-value=27 Score=25.51 Aligned_cols=64 Identities=9% Similarity=0.167 Sum_probs=38.0
Q ss_pred HHhHHHHhhhcCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 92 NDKFVELASILEPGR--PPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 92 NerF~eL~slL~P~~--~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
..-..+|..+ +++. .-..+.+-|..+--+++..|..+.+.++.....|+..+.++..+..+++.
T Consensus 35 ~~~~~EL~~l-~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 35 QKALEELSRA-ADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHS-CTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455544 3543 11456666666666777777777777777666666666666655555543
No 267
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.53 E-value=26 Score=26.03 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 141 QEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 141 ~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
.+++.++..+.++|+.+...++++++.++..+..+..
T Consensus 9 ~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455555556666666677777777777766644
No 268
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=55.32 E-value=70 Score=25.22 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026599 155 RDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 155 rdEk~~Lk~ekekLe~qlk 173 (236)
+++.+.|...-+++..+|.
T Consensus 76 q~qL~~Lt~~Re~V~~eL~ 94 (112)
T 1x79_B 76 QEQMAVLMQSREQVSEELV 94 (112)
T ss_dssp HHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 269
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=54.75 E-value=18 Score=26.64 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 026599 154 LRDEKQRLKAEKEKIE 169 (236)
Q Consensus 154 LrdEk~~Lk~ekekLe 169 (236)
|.+.+..||.||-|||
T Consensus 48 L~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 48 LMEQIKLLKSEIRRLE 63 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444455554444
No 270
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=54.13 E-value=39 Score=25.28 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRL 161 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~L 161 (236)
....-++.||..+.++ ..+.|++-+..|..-..|-|+|-...
T Consensus 9 k~L~niR~LRA~arel--~le~Lee~leKl~~VveERree~~~~ 50 (86)
T 3nr7_A 9 KILNNIRTLRAQARES--TLETLEEMLEKLEVVVNERREEESAA 50 (86)
T ss_dssp HHHTCHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567777777666 44555555555555555555544433
No 271
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=53.96 E-value=10 Score=29.13 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 146 ELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 146 ~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
.|+.+.++|+++...|+.|+++|+.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444445555555555555555543
No 272
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=53.58 E-value=30 Score=30.06 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=21.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 130 AQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
.|+|+.+..+.-.+..+|+...++|+.|+..|+....+|+
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 4455555555555555555555555555555555555544
No 273
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=53.58 E-value=63 Score=23.64 Aligned_cols=42 Identities=10% Similarity=0.307 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQ 159 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~ 159 (236)
.+..-|+.+..+.+.|+.....|+..+.+-+.+.+.++.|..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888888887777766666655544
No 274
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=53.46 E-value=0.75 Score=36.27 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 142 EKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 142 eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
+++.+|..++..|..|...|+.|...+..++..+.
T Consensus 58 ~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 58 TQKEELEKQKAELQQEVEKLASENASMKLELDALR 92 (107)
T ss_dssp HHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777766553
No 275
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.80 E-value=38 Score=27.61 Aligned_cols=13 Identities=15% Similarity=0.401 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 026599 160 RLKAEKEKIEQQL 172 (236)
Q Consensus 160 ~Lk~ekekLe~ql 172 (236)
.++...+.|+.++
T Consensus 100 ~~e~r~~~L~~ql 112 (135)
T 2e7s_A 100 AIEILNKRLTEQL 112 (135)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444433
No 276
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=52.24 E-value=68 Score=23.62 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 026599 159 QRLKAEKEKI 168 (236)
Q Consensus 159 ~~Lk~ekekL 168 (236)
..|..++..+
T Consensus 73 ~eLE~~l~el 82 (89)
T 3bas_A 73 YHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 277
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=51.93 E-value=22 Score=31.00 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=23.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 111 DKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 111 DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
++..+..+.+.-..++..+++.|.++|..++.++..|+.+..+...|....+.....|...+.
T Consensus 138 ~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt 200 (250)
T 2ve7_C 138 ACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVS 200 (250)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence 555555555555555555555555555554444444444433333232222333333433443
No 278
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=51.66 E-value=11 Score=34.39 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 128 SEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 128 ~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+++.+|+..+..++++|+.|+....+++.+.+.|+..+..|+..+.
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666667777766666666666666666666655444
No 279
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=50.97 E-value=43 Score=23.65 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~ee 143 (236)
++.|-.|+.+|++|+++|..+..-
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~ 32 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKS 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888877666543
No 280
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=50.92 E-value=70 Score=26.07 Aligned_cols=26 Identities=8% Similarity=0.337 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 148 KAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 148 k~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+...++.+.--.++++-+.+|...++
T Consensus 120 e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 120 EKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333344444444444433
No 281
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=50.90 E-value=70 Score=30.03 Aligned_cols=44 Identities=11% Similarity=0.152 Sum_probs=26.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 132 KLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 132 ~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
++.++...|+..+.....+..+|+.....++..+..|+++|..+
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444444444445556667666667777777777777664
No 282
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=50.73 E-value=40 Score=25.78 Aligned_cols=32 Identities=13% Similarity=0.301 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
+.+|..+.++|+.+...|+..+..|+....++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~ 34 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISEL 34 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554444444443
No 283
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=50.07 E-value=77 Score=24.41 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~ee 143 (236)
..++|..++.+|+.+...|+.-
T Consensus 48 t~~eL~~EI~~L~~eI~~LE~i 69 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLEKM 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666665555443
No 284
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=50.06 E-value=34 Score=26.33 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
+..|+.++++|..+-..|.+.|+.+.....+|.+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555556666555555555555555555444443
No 285
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=49.84 E-value=81 Score=23.78 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=15.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 129 EAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
.+..|+.+...+..++.....|..+|-+-|..|..||.
T Consensus 45 ~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 45 MLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444443
No 286
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=49.77 E-value=71 Score=26.39 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026599 157 EKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 157 Ek~~Lk~ekekLe~qlk~ 174 (236)
+.+.|++++..|+.+++.
T Consensus 88 ~la~l~~~~~~LeAE~aK 105 (146)
T 2xnx_M 88 ELDQLSSEKEQLTIEKAK 105 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333433444444444443
No 287
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=49.55 E-value=20 Score=32.09 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNEL 154 (236)
Q Consensus 138 ~~L~eeik~Lk~EknEL 154 (236)
+.|+++++.|..|..+|
T Consensus 188 e~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 188 ESLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444433
No 288
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=49.55 E-value=23 Score=22.75 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk 162 (236)
.+|+.++.+|-.++.+|.+|..+|+
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455555555555555555555444
No 289
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=48.02 E-value=92 Score=23.94 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKLK 134 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk 134 (236)
.++-++.++|..++++++
T Consensus 25 ~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 25 VDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666666654
No 290
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=47.55 E-value=90 Score=25.02 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHH-hhhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 122 MVTQLRSEAQKLKD-SNSSLQEKIKELK--------AEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 122 ylkqLr~qv~~Lk~-~n~~L~eeik~Lk--------~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
-++.|+++.+.|+. ....+-+.+++-. .++..-+++...+...+..|+.+|...
T Consensus 10 g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a 72 (158)
T 1grj_A 10 GAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNA 72 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 35677888888876 3334444444332 345556777778888899999999874
No 291
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=46.91 E-value=56 Score=29.54 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKI 144 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eei 144 (236)
+|+..|+++.++|+++.++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577777777777777776665443
No 292
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.47 E-value=81 Score=26.07 Aligned_cols=8 Identities=38% Similarity=0.451 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 026599 167 KIEQQLKA 174 (236)
Q Consensus 167 kLe~qlk~ 174 (236)
.++.||..
T Consensus 133 ~lq~ql~~ 140 (154)
T 2ocy_A 133 TLTLQLKN 140 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334433
No 293
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=46.24 E-value=1.2e+02 Score=24.87 Aligned_cols=54 Identities=24% Similarity=0.373 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL--R-----DEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL--r-----dEk~~Lk~ekekLe~qlk~ 174 (236)
.-+|.|.....+-.+....++++|+.|+....+. | .....|..++++|+..|..
T Consensus 56 ~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 56 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666555555555566666677666555433 2 2445888888888888765
No 294
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=45.97 E-value=66 Score=23.91 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQ 159 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~ 159 (236)
+..-|+.|..+.+.|+.....|+..+.+-+.+.+.++.|..
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777887777777777766666665555544
No 295
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=45.64 E-value=24 Score=27.44 Aligned_cols=6 Identities=33% Similarity=0.528 Sum_probs=2.1
Q ss_pred HHHHHH
Q 026599 140 LQEKIK 145 (236)
Q Consensus 140 L~eeik 145 (236)
|.+.+.
T Consensus 101 L~~~i~ 106 (117)
T 3kin_B 101 LKSVIQ 106 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 296
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.26 E-value=20 Score=33.54 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026599 129 EAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQP 179 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p 179 (236)
++++++.....+.+.++.|..++++|. .+...++.+++.+..+|
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~-------~~~~~~~~e~~~l~~~~ 69 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALN-------DKVRFIKDELRLLQEPG 69 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCC
Confidence 344444444444444455555555444 44445555555555544
No 297
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=45.16 E-value=84 Score=23.94 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
+.+|+++++ .+++.|+...+.|++.+..++.....+.
T Consensus 86 ~~eA~~~l~---~r~~~l~~~~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 86 FEDAMESIK---SQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456776654 3555555555455544444444444333
No 298
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=45.10 E-value=25 Score=30.21 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhhHHHH
Q 026599 127 RSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 127 r~qv~~Lk~~n~~L~ee 143 (236)
-.++.+|+..|..|++|
T Consensus 160 L~~i~~L~a~N~hLqkE 176 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKE 176 (186)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 299
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=44.91 E-value=1.1e+02 Score=25.48 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=31.0
Q ss_pred HHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 026599 89 DRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKI 144 (236)
Q Consensus 89 dkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eei 144 (236)
+.||..+.+|+.-|.|-. .-=.+-|..++-.|-.+|+..++.|+.......+++
T Consensus 69 ~~l~~~~~~l~~qL~P~~--~e~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL 122 (191)
T 1nfn_A 69 KELKAYKSELEEQLTPVA--EETRARLSKELQAAQARLGADMEDVCGRLVQYRGEV 122 (191)
T ss_dssp HHHHHHHHHHTTC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 445666777888886753 112345666777777778888888887766555554
No 300
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.75 E-value=1.1e+02 Score=25.54 Aligned_cols=29 Identities=10% Similarity=0.144 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhCCCCCC
Q 026599 153 ELRDEKQRLKAEKEKIEQQLKA-MSTQPSFL 182 (236)
Q Consensus 153 ELrdEk~~Lk~ekekLe~qlk~-~~~~p~~~ 182 (236)
+|.+|...|++++.....+++. |.-. |+.
T Consensus 117 aL~~Ei~~Lr~qL~~~R~k~~~em~Ke-Gip 146 (175)
T 3lay_A 117 AVAKEMESLGQKLDEQRVKRDVAMAQA-GIP 146 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 3444444444444444333333 3334 543
No 301
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=44.73 E-value=54 Score=27.76 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=13.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 129 EAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
.+++|+.++..|++++...+.+...++++
T Consensus 136 tV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 136 TTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444444433
No 302
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=44.53 E-value=92 Score=25.05 Aligned_cols=56 Identities=9% Similarity=0.118 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHH-hhhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 121 RMVTQLRSEAQKLKD-SNSSLQEKIKELK--------AEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~-~n~~L~eeik~Lk--------~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
+-++.|+++.+.|+. +...+.+.+++-. .|+..-+++...+...+..|+.+|....
T Consensus 9 ~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 9 EGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 345678888888854 3334444443333 4444557777888888999999888743
No 303
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=44.39 E-value=52 Score=21.44 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=7.9
Q ss_pred HHHHHhhhhHHHHHHHHHHH
Q 026599 131 QKLKDSNSSLQEKIKELKAE 150 (236)
Q Consensus 131 ~~Lk~~n~~L~eeik~Lk~E 150 (236)
++|-.+.+.-+++|..|+.|
T Consensus 10 ekLhk~ie~KdeeIa~Lk~e 29 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444433
No 304
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=44.10 E-value=35 Score=22.26 Aligned_cols=9 Identities=33% Similarity=0.590 Sum_probs=3.9
Q ss_pred hhhhHHHHH
Q 026599 136 SNSSLQEKI 144 (236)
Q Consensus 136 ~n~~L~eei 144 (236)
+|++|..+|
T Consensus 8 ENekLhk~i 16 (37)
T 1t6f_A 8 ENEKLHKEI 16 (37)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 305
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=42.97 E-value=55 Score=22.87 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
++|-..+..|+.|-..||.|..-=-.++.+||.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ 38 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLET 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHh
Confidence 344444555555555555554433333334433
No 306
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.88 E-value=96 Score=24.11 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 026599 159 QRLKAEKEKIEQQLKA 174 (236)
Q Consensus 159 ~~Lk~ekekLe~qlk~ 174 (236)
...|.+.+||-.+++.
T Consensus 87 r~~k~q~~KL~~dF~~ 102 (130)
T 2dnx_A 87 RQQRLQKERLMNDFSA 102 (130)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455556666666554
No 307
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.67 E-value=34 Score=22.42 Aligned_cols=6 Identities=50% Similarity=0.833 Sum_probs=2.3
Q ss_pred HHHHHH
Q 026599 153 ELRDEK 158 (236)
Q Consensus 153 ELrdEk 158 (236)
.|++||
T Consensus 26 ~LkeEK 31 (38)
T 2l5g_A 26 ALQEEK 31 (38)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 308
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.64 E-value=18 Score=28.63 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=22.8
Q ss_pred HHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 026599 91 LNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKI 144 (236)
Q Consensus 91 LNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eei 144 (236)
..+.+.+++.+| . .+. .+...-|..|+++..+|+.+++.|..++
T Consensus 12 ~~~~l~~~a~~L--k--~~~------~~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 12 MERLLREASSIL--R--VEP------AKLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHTT--T--CCT------TSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--C--CCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666 1 111 1344455555566666666555555543
No 309
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=42.55 E-value=12 Score=27.93 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 142 EKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 142 eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
+|...||..+.||.+.+..|+.|..
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~ 39 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENT 39 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554433
No 310
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.07 E-value=2.4e+02 Score=26.98 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026599 155 RDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 155 rdEk~~Lk~ekekLe~qlk~ 174 (236)
+.....|+..+.+|+..+..
T Consensus 174 ~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 174 RAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555544
No 311
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=41.90 E-value=1.2e+02 Score=23.64 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQ 159 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~ 159 (236)
-|+.++...+.+...|..++.+|+.....|..|..
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666666655544
No 312
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=41.47 E-value=18 Score=29.98 Aligned_cols=51 Identities=25% Similarity=0.276 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.-.+.....++.....|..++..|+.+...|.++++.+.+-...|...|.+
T Consensus 76 easr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeA 126 (146)
T 2xnx_M 76 EINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDA 126 (146)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-------------
T ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444444555555555556666666666666666665555555555544
No 313
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=41.33 E-value=30 Score=25.06 Aligned_cols=30 Identities=37% Similarity=0.438 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 143 KIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 143 eik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
.|++|..+.++-.+|...|+.++.|.+.-|
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555554554555555555555544433
No 314
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=41.04 E-value=17 Score=23.30 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKA 149 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~ 149 (236)
..|.-|+.+++.|+.+.+.+++++..+..
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555443
No 315
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=41.01 E-value=1.1e+02 Score=22.78 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=34.0
Q ss_pred HHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 97 ELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 97 eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
-|-++++|... -++-++.+.|||..--..++++..|++++...|.+.-.+.++
T Consensus 14 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ee 66 (77)
T 3mtu_E 14 ILNKLLDPELA--------QSERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQM 66 (77)
T ss_dssp HHHHTTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 36677878651 246677888888877777777777777765555554455444
No 316
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=40.82 E-value=1.2e+02 Score=23.65 Aligned_cols=38 Identities=5% Similarity=0.170 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 138 SSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 138 ~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
..|++.+..|..+..+|+.-...|...+..++..++.-
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 135 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSA 135 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555666666667777777777777777777766653
No 317
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=40.65 E-value=20 Score=33.22 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Q 026599 155 RDEKQRLKAEKEKIEQQLKAMSTQ 178 (236)
Q Consensus 155 rdEk~~Lk~ekekLe~qlk~~~~~ 178 (236)
.+|...|+.+++.++.+|+.+-.|
T Consensus 59 ~~e~~~l~~~l~~le~~l~~lL~p 82 (342)
T 1rq0_A 59 ELEIEKYEKELDQLYQELLFLLSP 82 (342)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 667889999999999999986553
No 318
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=39.98 E-value=1.3e+02 Score=23.19 Aligned_cols=6 Identities=33% Similarity=0.767 Sum_probs=2.2
Q ss_pred HHHHHH
Q 026599 167 KIEQQL 172 (236)
Q Consensus 167 kLe~ql 172 (236)
-|+.+|
T Consensus 82 ~L~~eL 87 (96)
T 1t3j_A 82 QLESEL 87 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 319
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=39.90 E-value=1.1e+02 Score=22.27 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026599 149 AEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 149 ~EknELrdEk~~Lk~ekekLe~q 171 (236)
....+|..+...++.+..+.-.+
T Consensus 33 ~~i~~lE~eL~~~r~e~~~q~~E 55 (84)
T 1gk4_A 33 DTIGRLQDEIQNMKEEMARHLRE 55 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333
No 320
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=39.90 E-value=68 Score=31.11 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ek 165 (236)
+|..+|+.++.-|+.....--..|+.|+....+++.+.++|...|
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888887655433677888888888888888876655
No 321
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=39.48 E-value=17 Score=24.75 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQ 141 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~ 141 (236)
.||.+|+.+++.|+..+..|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 788888888888887666554
No 322
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.31 E-value=40 Score=31.45 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKA 163 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ 163 (236)
.|++++.+++++.+....|+.+.+.|..+...+++|...|+.
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~ 67 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQE 67 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356677777777666677777777777777777766665543
No 323
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=39.29 E-value=41 Score=25.89 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 144 IKELKAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 144 ik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
+..|+.|..+|..+=..|...+..++++|+.+.
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555556666666666666654
No 324
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=39.27 E-value=87 Score=26.48 Aligned_cols=38 Identities=5% Similarity=0.113 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKN 152 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ekn 152 (236)
+++.|-+-|+.|+.++..|++++....++.+.+..+.+
T Consensus 129 li~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 129 LICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777776666666555554433
No 325
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=39.24 E-value=1e+02 Score=26.41 Aligned_cols=39 Identities=21% Similarity=0.408 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
-+..+++-|+.+|.++.+|+. +.++|+..|.+..+.++.
T Consensus 27 ~~~~~l~~L~~iQ~e~~~l~~---e~~~ev~~lE~ky~~~~~ 65 (225)
T 2e50_A 27 EQQEAIEHIDEVQNEIDRLNE---QASEEILKVEQKYNKLRQ 65 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC
Confidence 366777778888877777765 445666666666666554
No 326
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=38.84 E-value=1.1e+02 Score=25.64 Aligned_cols=15 Identities=20% Similarity=0.394 Sum_probs=10.6
Q ss_pred HHHHHHhHHHHhhhc
Q 026599 88 RDRLNDKFVELASIL 102 (236)
Q Consensus 88 RdkLNerF~eL~slL 102 (236)
.|+|-+.|..++.-|
T Consensus 33 yd~l~e~y~r~sqEi 47 (170)
T 3l4q_C 33 YDQLYEEYTRTSQEL 47 (170)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHH
Confidence 466777777777766
No 327
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=38.83 E-value=1.4e+02 Score=23.92 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=28.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 129 EAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
++..++.+...|-...+.+..|..|+.+-...--.....+-|+|+.
T Consensus 51 ~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~ 96 (123)
T 4aj5_K 51 ELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQK 96 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666667777777777776666555555555555554
No 328
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=38.68 E-value=65 Score=23.22 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
..+-.++|+.++.+|+.++..+...-.. +.--.|+.....|..|++++..+|.+
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQDeF--AKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQDNY--AKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455677777777777766544221111 11123444555566666666666654
No 329
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=38.62 E-value=61 Score=25.50 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
+.+|+++++ .+++.|+...+.|++.+..++
T Consensus 96 ~~eA~~~l~---~ri~~l~~~l~~l~~~l~~l~ 125 (151)
T 2zdi_C 96 IDEAISFLE---KRLKEYDEAIKKTQGALAELE 125 (151)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 567777655 344444444444444443333
No 330
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=38.43 E-value=1.3e+02 Score=22.88 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=40.4
Q ss_pred HHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 97 ELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 97 eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
-|-++++|... -++-++.+.|||..--..-.+...|...-..|.+|++.|---|+.|-.++--
T Consensus 10 ilnkl~~pel~--------~serte~lqqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig~ 72 (97)
T 1no4_A 10 ILNKLLDPELA--------QSERTEALQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGL 72 (97)
T ss_dssp HHHHHHCTTSC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHhhh--------hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhcc
Confidence 35667777651 3566777788877666655566666655566677777776666666655543
No 331
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.18 E-value=43 Score=24.24 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 128 SEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 128 ~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
..+.+|+.++..-.++|.+|+.+.+.++
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 332
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=38.12 E-value=59 Score=24.44 Aligned_cols=52 Identities=8% Similarity=0.261 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAE-KNEL---RDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~E-knEL---rdEk~~Lk~ekekLe~ql 172 (236)
.+.++|+.-++.|++....|.+.|.-.+.. ..|+ +.-...|+.+++.++.++
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666665554442221 1122 223334555555555554
No 333
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=37.91 E-value=52 Score=28.38 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
..|..++++|+.++..|.....-+.++...+|
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~R 93 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFENFR 93 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444444444443
No 334
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=37.89 E-value=1.2e+02 Score=22.30 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNE 153 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknE 153 (236)
++...+.+++.+......|.+++..+..+..+
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~ 96 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333333
No 335
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=37.86 E-value=75 Score=26.68 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=22.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 134 KDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 134 k~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
+...+.|......|+.++..|..+.+.|..+++.++.
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666666666666666666
No 336
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=37.77 E-value=91 Score=28.67 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=6.9
Q ss_pred HHHHHhHHHHhhhc
Q 026599 89 DRLNDKFVELASIL 102 (236)
Q Consensus 89 dkLNerF~eL~slL 102 (236)
+.|-+.|..++.-|
T Consensus 143 ~~~~~~~~~~~~e~ 156 (373)
T 3hhm_B 143 DRLYEEYTRTSQEI 156 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHH
Confidence 44555555444444
No 337
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=37.49 E-value=48 Score=26.86 Aligned_cols=20 Identities=0% Similarity=0.117 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLK 134 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk 134 (236)
++.++...+++|...+..+.
T Consensus 10 ei~e~~~~i~~l~~~Ik~il 29 (129)
T 3f6n_A 10 EVSEILSDQKSMKADIKAIL 29 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 338
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=37.33 E-value=49 Score=25.64 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=23.1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 109 KTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKE 166 (236)
Q Consensus 109 K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~eke 166 (236)
|.+...=|...|.-.+...+++.-|+..+.-..+.-..-+.....+..|+..|..+..
T Consensus 36 KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L~~ql~ 93 (96)
T 3fx0_A 36 KQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLE 93 (96)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4554444555444444444555555554443333322223333333344444444433
No 339
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=37.28 E-value=1.1e+02 Score=23.29 Aligned_cols=24 Identities=29% Similarity=0.265 Sum_probs=16.4
Q ss_pred CcchhHHHHHHHHHHHhHHHHhhhc
Q 026599 78 SSKACREKLRRDRLNDKFVELASIL 102 (236)
Q Consensus 78 ~~ka~rER~RRdkLNerF~eL~slL 102 (236)
.+|-.-|+|| .+|..++.+|..-|
T Consensus 8 ~s~LPpeqRk-kkL~~Ki~el~~ei 31 (98)
T 2ke4_A 8 FSHLPPEQQR-KRLQQQLEERSREL 31 (98)
T ss_dssp SSSSCHHHHH-HHHHHHHHHHHHHH
T ss_pred hccCCHHHHH-HHHHHHHHHHHHHH
Confidence 4466667644 47888888877777
No 340
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=37.18 E-value=54 Score=29.76 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026599 143 KIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 143 eik~Lk~EknELrdEk~~Lk~ek 165 (236)
.|+.|.....+|+++.+.|+..+
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v 51 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAI 51 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554444444433
No 341
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=37.18 E-value=18 Score=33.74 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=42.8
Q ss_pred HHHHHHhHHHHhhhc-CCCCCCCC-------chhhhHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHH
Q 026599 88 RDRLNDKFVELASIL-EPGRPPKT-------DKAAILIDAVRMVTQLRSEAQKLKDSNS-SLQEKIKELKAEKNELRDEK 158 (236)
Q Consensus 88 RdkLNerF~eL~slL-~P~~~~K~-------DKAsIL~dAI~ylkqLr~qv~~Lk~~n~-~L~eeik~Lk~EknELrdEk 158 (236)
=+.+.++|.+|...+ +|+.-... ..-+-|...+..+++|+...+.++...+ -+.++ -.++.+|.
T Consensus 19 l~~~~~r~~ele~~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~ee-------d~~a~~e~ 91 (365)
T 2ihr_1 19 IPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAEE-------REALKPEL 91 (365)
T ss_dssp HHHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCTT-------GGGTGGGT
T ss_pred HHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------HHHHHHHH
Confidence 345667788887755 35321122 3345555566666666555555554333 11111 14667788
Q ss_pred HHHHHHHHHHHH
Q 026599 159 QRLKAEKEKIEQ 170 (236)
Q Consensus 159 ~~Lk~ekekLe~ 170 (236)
..|+.++++++.
T Consensus 92 ~~l~~~~~~le~ 103 (365)
T 2ihr_1 92 EEAAKKLDELYH 103 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888883
No 342
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.17 E-value=93 Score=20.86 Aligned_cols=12 Identities=50% Similarity=0.592 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHh
Q 026599 125 QLRSEAQKLKDS 136 (236)
Q Consensus 125 qLr~qv~~Lk~~ 136 (236)
-|+.+.+.|+++
T Consensus 4 alkselqalkke 15 (48)
T 1g6u_A 4 ALKSELQALKKE 15 (48)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 456666666653
No 343
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=37.16 E-value=1.7e+02 Score=23.78 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKEL 147 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~L 147 (236)
..+-++.++..+.+..|.+-|..|..|+++-
T Consensus 68 ~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR 98 (152)
T 4fla_A 68 EAAERLSKTVDEACLLLAEYNGRLAAELEDR 98 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666665443
No 344
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=37.10 E-value=43 Score=26.97 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=4.7
Q ss_pred HHHHHHHHhhhh
Q 026599 128 SEAQKLKDSNSS 139 (236)
Q Consensus 128 ~qv~~Lk~~n~~ 139 (236)
.+++.|....+.
T Consensus 10 ~Eiq~L~drLD~ 21 (123)
T 2lf0_A 10 NEIKRLSDRLDA 21 (123)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444433333
No 345
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=37.04 E-value=1.3e+02 Score=22.56 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 026599 163 AEKEKIEQQLK 173 (236)
Q Consensus 163 ~ekekLe~qlk 173 (236)
.|+..|+.+|.
T Consensus 54 ~El~~Lq~qLe 64 (81)
T 3qh9_A 54 AEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 346
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=36.46 E-value=52 Score=25.46 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026599 155 RDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 155 rdEk~~Lk~ekekLe~qlk~ 174 (236)
.+++..|+.++..||.+|..
T Consensus 95 ~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 95 KEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544
No 347
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=36.45 E-value=1.9e+02 Score=24.32 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=26.9
Q ss_pred HHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 026599 92 NDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSN 137 (236)
Q Consensus 92 NerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n 137 (236)
-+.+..|+..+|-|. -.||.-+.. .||+=|+++...+++..
T Consensus 54 ~~k~~qlre~~d~gt--t~~~i~~m~---~yI~llrErea~lEqkV 94 (169)
T 3k29_A 54 MQKIRQLREQLDDGT--TSDAILKMK---AYIKVVAIQLSEEEEKV 94 (169)
T ss_dssp HHHHHHHHHHHHHCC--CHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--CcHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455888999997764 556655444 46666777766666544
No 348
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=36.25 E-value=73 Score=21.87 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhhhh
Q 026599 123 VTQLRSEAQKLKDSNSS 139 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~ 139 (236)
|..|..++++++.+.+.
T Consensus 9 i~~le~el~~~r~e~~~ 25 (59)
T 1gk6_A 9 VEELLSKNYHLENEVAR 25 (59)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 349
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=36.14 E-value=52 Score=22.28 Aligned_cols=13 Identities=38% Similarity=0.565 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 026599 153 ELRDEKQRLKAEK 165 (236)
Q Consensus 153 ELrdEk~~Lk~ek 165 (236)
|+|.|.+.+|.||
T Consensus 19 E~RkElqK~K~EI 31 (45)
T 1use_A 19 EVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555443
No 350
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=36.14 E-value=1.2e+02 Score=21.94 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhHHHHhh
Q 026599 83 REKLRRDRLNDKFVELAS 100 (236)
Q Consensus 83 rER~RRdkLNerF~eL~s 100 (236)
.|++.-+.|-.++..|-.
T Consensus 19 keqrEle~le~~Ie~LE~ 36 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEA 36 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 351
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=36.05 E-value=67 Score=23.77 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQK 132 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~ 132 (236)
=..+|+.||+.++.+-+.
T Consensus 9 ~~~~A~~YvnkVK~rF~~ 26 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQG 26 (89)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHcc
Confidence 468999999999987544
No 352
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=35.72 E-value=1.3e+02 Score=22.24 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=6.0
Q ss_pred HHHHHHH-HHHHHHH
Q 026599 161 LKAEKEK-IEQQLKA 174 (236)
Q Consensus 161 Lk~ekek-Le~qlk~ 174 (236)
-|++..+ |..+|+.
T Consensus 77 Yk~dl~~~lk~~lk~ 91 (97)
T 3onj_A 77 WKKTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 3444444 4444443
No 353
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=35.56 E-value=48 Score=24.00 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026599 153 ELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 153 ELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+|+.+...|+.+++.|+.+++.
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555543
No 354
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.46 E-value=16 Score=22.21 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=9.8
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q 026599 133 LKDSNSSLQEKIKELKAEK 151 (236)
Q Consensus 133 Lk~~n~~L~eeik~Lk~Ek 151 (236)
|+-+|..|+.+|..|++..
T Consensus 5 lefendaleqkiaalkqki 23 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 4445555555555555443
No 355
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=35.20 E-value=29 Score=25.52 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKA 149 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~ 149 (236)
.-..+|+.||+.++.+-+.--+-..+..+-.+..+.
T Consensus 5 ~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~ 40 (85)
T 1e91_A 5 VEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQK 40 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 346899999999998755433333444444444443
No 356
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=34.75 E-value=1.2e+02 Score=29.01 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKD 135 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~ 135 (236)
.|-+||+.|+...+..+.
T Consensus 118 ~~~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 118 TMYQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 455565555555444433
No 357
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=34.68 E-value=2.6e+02 Score=25.26 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 026599 146 ELKAEKNELRDEKQRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 146 ~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~ 177 (236)
+...+...||=.-.+|.++++-|++-|..+..
T Consensus 363 e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 394 (406)
T 4dyl_A 363 EALQGLQVALCSQAKLQAQQELLQTKLEHLGP 394 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC
Confidence 34444445565666788888888888877654
No 358
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=34.59 E-value=18 Score=33.65 Aligned_cols=85 Identities=15% Similarity=0.265 Sum_probs=29.7
Q ss_pred HHHHhHHHHhhhc-CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHH-HHHHHHHHHHHHHH
Q 026599 90 RLNDKFVELASIL-EPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELK--AEK-NELRDEKQRLKAEK 165 (236)
Q Consensus 90 kLNerF~eL~slL-~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk--~Ek-nELrdEk~~Lk~ek 165 (236)
.+.++|.+|...+ +|+.-...+++.-|..-...|+.+-...++++...+.+.+ ..+|- .+. .++.+|...|+.++
T Consensus 11 ~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~-~~el~eD~e~~~~a~~e~~~l~~~~ 89 (360)
T 2b3t_B 11 ALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIET-AQMMLDDPEMREMAQDELREAKEKS 89 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-------------------------------
T ss_pred HHHHHHHHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4556677776644 4554334556655555555555555555555544433332 12221 111 23456677778888
Q ss_pred HHHHHHHHHh
Q 026599 166 EKIEQQLKAM 175 (236)
Q Consensus 166 ekLe~qlk~~ 175 (236)
+.++.+|+.+
T Consensus 90 ~~le~~l~~~ 99 (360)
T 2b3t_B 90 EQLEQQLQVL 99 (360)
T ss_dssp -----CCCCC
T ss_pred HHHHHHHHhh
Confidence 8888777654
No 359
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=34.19 E-value=68 Score=29.52 Aligned_cols=40 Identities=10% Similarity=0.326 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 128 SEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 128 ~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
...++|+++.........++..+.|-|+-|...|+..+++
T Consensus 219 ~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~ 258 (373)
T 3hhm_B 219 DSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQ 258 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 3333444433333333445555555555555555554443
No 360
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=34.19 E-value=1.6e+02 Score=22.75 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHH
Q 026599 87 RRDRLNDKFVEL 98 (236)
Q Consensus 87 RRdkLNerF~eL 98 (236)
||.-|+++..-|
T Consensus 26 KkkiLaER~kpL 37 (106)
T 1j1d_B 26 KKKILAERRKVL 37 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC
Confidence 444677777555
No 361
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=34.07 E-value=84 Score=23.70 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhhhhHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQE-------------KIKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~e-------------eik~Lk~EknELrdEk~~Lk~ek 165 (236)
|..|+++..+|+.+...+.. .|+ +--++||++|=-+.|-.-+
T Consensus 10 i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~-~Lh~YNeiKD~gq~L~g~i 64 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHID-LLHTYNEIRDIALGMIGKV 64 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH-HHHHHhHHHHHHHHHHHHH
Confidence 45555555555555544432 222 3346777776666654433
No 362
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=34.05 E-value=1.3e+02 Score=22.12 Aligned_cols=8 Identities=13% Similarity=0.235 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 026599 125 QLRSEAQK 132 (236)
Q Consensus 125 qLr~qv~~ 132 (236)
+|+.++.+
T Consensus 18 ~lq~~~~~ 25 (111)
T 2oie_A 18 DIRRLHAE 25 (111)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 363
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=33.88 E-value=1.6e+02 Score=22.55 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC
Q 026599 153 ELRDEKQRLKAEKEKIEQQLKAMSTQ 178 (236)
Q Consensus 153 ELrdEk~~Lk~ekekLe~qlk~~~~~ 178 (236)
+|-||...|-.||..+|.+|+.+..+
T Consensus 56 dLNDEINkL~rEK~~WE~rI~eLGGp 81 (92)
T 1x4t_A 56 DLNDEINKLLREKGHWEVRIKELGGP 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34445555667889999999987654
No 364
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=33.64 E-value=1.1e+02 Score=21.73 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQE 142 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~e 142 (236)
.+=+.|..|++...+|-.....|+.
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le~ 32 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLEF 32 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333333333
No 365
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=33.39 E-value=88 Score=30.55 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=23.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 131 QKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 131 ~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
..|+.+...++++++.++.+.++++...+.++.++.+.-..+
T Consensus 355 ~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 396 (695)
T 2j69_A 355 PLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQ 396 (695)
T ss_dssp HHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666655555555555444333
No 366
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=32.58 E-value=1.5e+02 Score=21.93 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKL 133 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~L 133 (236)
.+|-++|.++.-+++.+
T Consensus 44 dEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 44 DELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34444444444444444
No 367
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.26 E-value=37 Score=31.82 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026599 153 ELRDEKQRLKAEKEKIEQQLKAMSTQP 179 (236)
Q Consensus 153 ELrdEk~~Lk~ekekLe~qlk~~~~~p 179 (236)
+++++...|+.+.++.+.+++.+...|
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~l~~~~ 102 (437)
T 4b4t_L 76 QRRQNIRDLEKLYDKTENDIKALQSIG 102 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 334444445566666666777776655
No 368
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=31.93 E-value=1.7e+02 Score=23.17 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKEL--------KAEKNELRDEKQRLKAEKEKIEQQLKAMS 176 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~L--------k~EknELrdEk~~Lk~ekekLe~qlk~~~ 176 (236)
++.|+++++........+.+.+++- ..++...+++...+...+..|+.+|....
T Consensus 12 ~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~ 73 (156)
T 2f23_A 12 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAV 73 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4556666555333333333333332 23455667777888889999999998743
No 369
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=31.86 E-value=88 Score=21.55 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAE 150 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~E 150 (236)
|..-+.+|+..|..|+..|..|...
T Consensus 22 lenivarlendnanlekdianlekd 46 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLEKD 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHH
Confidence 3334444555555444444444433
No 370
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=31.78 E-value=69 Score=20.06 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026599 153 ELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 153 ELrdEk~~Lk~ekekLe~ 170 (236)
....||-.|.+|...|++
T Consensus 12 qaeaenyqleqevaqleh 29 (33)
T 1fmh_A 12 QAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 334445555555555554
No 371
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=31.76 E-value=88 Score=25.17 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQEKIKELKAEK-------NELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~eeik~Lk~Ek-------nELrdEk~~Lk~ekekLe~qlk~ 174 (236)
.+|+..+..|+.....|+.++..+.... ..|.......++|.++.+..|+.
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~ 121 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKK 121 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443322211 12222333456666666666654
No 372
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=31.62 E-value=1.1e+02 Score=20.25 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=3.7
Q ss_pred HHHHhhhhHH
Q 026599 132 KLKDSNSSLQ 141 (236)
Q Consensus 132 ~Lk~~n~~L~ 141 (236)
+|+.-+..|+
T Consensus 7 elknyiqele 16 (46)
T 3he4_B 7 ELKNYIQELE 16 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 373
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.42 E-value=1.8e+02 Score=22.45 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q 026599 127 RSEAQKLKDSNSSLQEKIKELKAEKN 152 (236)
Q Consensus 127 r~qv~~Lk~~n~~L~eeik~Lk~Ekn 152 (236)
.++.-+.+.+++.|++++.+|+....
T Consensus 10 ~~~~~~~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 10 LERCLKGEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444445555555555554443
No 374
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=31.38 E-value=78 Score=24.47 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=1.2
Q ss_pred HHHHHHHHHHhh
Q 026599 126 LRSEAQKLKDSN 137 (236)
Q Consensus 126 Lr~qv~~Lk~~n 137 (236)
|..+++.|+...
T Consensus 4 l~~~~~~l~~~~ 15 (182)
T 3kqg_A 4 LNAQIPELKSDL 15 (182)
T ss_dssp ---------CHH
T ss_pred hhhhHHHHHHHH
Confidence 445555555433
No 375
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=31.33 E-value=81 Score=23.71 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=9.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 026599 112 KAAILIDAVRMVTQLRSEAQKLK 134 (236)
Q Consensus 112 KAsIL~dAI~ylkqLr~qv~~Lk 134 (236)
|-..|.++=+.|.+.++-+++++
T Consensus 47 rk~~i~~ie~~ldEA~eLl~qMe 69 (102)
T 2qyw_A 47 KKKLVRDFDEKQQEANETLAEME 69 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 376
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.89 E-value=1.5e+02 Score=21.53 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 129 EAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+++.+......|+.++..++.+....-.|-+.|-.=|..|+.+|-
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344444444445555555555544444455555555566666554
No 377
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=30.76 E-value=1.3e+02 Score=24.92 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=25.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 129 EAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
++++|+.+...+.+.|+.-+....||......+|.=+.|-++
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~ 47 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRH 47 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666655555555554443
No 378
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=30.73 E-value=3.1e+02 Score=25.00 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 026599 145 KELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQPS 180 (236)
Q Consensus 145 k~Lk~EknELrdEk~~Lk~ekekLe~qlk~~~~~p~ 180 (236)
+.|..| .++.-+...+-.+++.|+.++..++.+-|
T Consensus 73 ~~Le~E-re~~~~Rd~~a~~k~~Le~~ierLs~pgg 107 (302)
T 3ibp_A 73 QLLERE-REAIVERDEVGARKNAVDEEIERLSQPGG 107 (302)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344444 45556666777788899999998877544
No 379
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.36 E-value=1.1e+02 Score=20.45 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 026599 128 SEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 128 ~qv~~Lk~~n~~L~eeik~Lk 148 (236)
.++++...+++..+++|.+|+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333333
No 380
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=30.22 E-value=1.5e+02 Score=27.56 Aligned_cols=37 Identities=8% Similarity=0.172 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
..+|..|+.||.++.+|+.+ .++++..|++..+.++.
T Consensus 52 ~~rI~aLk~lQ~E~~~le~e---f~eEv~~LE~KY~kl~q 88 (359)
T 3fs3_A 52 KETLKKLKLYQKEYYDYESK---FEYELFLLRQKYHDLYG 88 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 45788888888888888764 34556666666665544
No 381
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=30.22 E-value=1.2e+02 Score=23.41 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 150 EKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 150 EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
|+-+|......-+-||..|..++.-+
T Consensus 64 EKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 64 EKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 33333333333444555555555544
No 382
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=29.76 E-value=94 Score=27.35 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL 154 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL 154 (236)
++=+.|..|..+++++.+..+..+..++.++....||
T Consensus 10 ~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL 46 (233)
T 2yko_A 10 QLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEI 46 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555444444444444444333344
No 383
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=29.70 E-value=2.4e+02 Score=24.77 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=9.1
Q ss_pred HHHHHHhhhhHHHHHHHHH
Q 026599 130 AQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 130 v~~Lk~~n~~L~eeik~Lk 148 (236)
++.++..-..|..+|..|+
T Consensus 106 vqp~R~~R~~l~~~I~kLk 124 (234)
T 3plt_A 106 VQPSRDRKEKITDEIAHLK 124 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3333344445555555554
No 384
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=29.37 E-value=1.3e+02 Score=23.36 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
-++.++|...+..|+++-=.|+..++.-.-|+++|+.
T Consensus 48 ~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~ 84 (107)
T 1ytz_T 48 RDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRN 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Confidence 3566777777777777665666655555555555543
No 385
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=29.18 E-value=1.9e+02 Score=22.10 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=5.7
Q ss_pred HHHHhHHHHh
Q 026599 90 RLNDKFVELA 99 (236)
Q Consensus 90 kLNerF~eL~ 99 (236)
.|+..|..+.
T Consensus 33 eL~~~~~~~~ 42 (107)
T 2no2_A 33 ELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555665554
No 386
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.03 E-value=1.8e+02 Score=21.77 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=23.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 129 EAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 129 qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+.+.+......|+.++..++.+....-.|-+.|-.=|..|+.+|-.
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555554444334455555556666666543
No 387
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=28.84 E-value=72 Score=24.49 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=17.4
Q ss_pred CCCcchhHHHHHHHHHHHhHHHHhhhcCCC
Q 026599 76 SSSSKACREKLRRDRLNDKFVELASILEPG 105 (236)
Q Consensus 76 ~~~~ka~rER~RRdkLNerF~eL~slL~P~ 105 (236)
.+.+-...||=|++-|.|-=..+..|=+|+
T Consensus 19 ~v~~l~~AekWR~qvikEIs~Kv~~Iqn~~ 48 (92)
T 1x4t_A 19 ECTELPKAEKWRRQIIGEISKKVAQIQNAG 48 (92)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 345566778888766555444444444444
No 388
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=28.43 E-value=1.6e+02 Score=28.16 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=27.9
Q ss_pred hHHHHHHHH---HHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 026599 82 CREKLRRDR---LNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQ 141 (236)
Q Consensus 82 ~rER~RRdk---LNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n~~L~ 141 (236)
.-|..||.- |.|.+.-|++-+ -.. .+...-++....+.+++.++.+...|....+.|.
T Consensus 49 ~~e~~~~~~~~~~~e~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 109 (526)
T 2de0_X 49 DHEILRRRIENGAKELWFFLQSEL-KKL-KNLEGNELQRHADEFLLDLGHHERSIMTDLYYLS 109 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHH-HTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH-HHh-hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458777733 333444444444 111 1223344555555566665555555555444443
No 389
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=28.37 E-value=2.5e+02 Score=25.03 Aligned_cols=87 Identities=14% Similarity=0.332 Sum_probs=47.9
Q ss_pred hHHHH-HHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHH-HHH-------------------HHHHHHHhhhhH
Q 026599 82 CREKL-RRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQ-LRS-------------------EAQKLKDSNSSL 140 (236)
Q Consensus 82 ~rER~-RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkq-Lr~-------------------qv~~Lk~~n~~L 140 (236)
-.+|. .+|.|-+.|..++..| +-|.-=..-..+||.+..+ ++. +++.|.+.++.|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~----~~k~~a~~af~~~~~~f~~q~~~qe~~~~~~~~~~~~~~~~~e~~~~~~n~e~l 102 (302)
T 2y3a_B 27 YQDKSREYDQLYEEYTRTSQEL----QMKRTAIEAFNETIKIFEEQGQTQEKCSKEYLERFRREGNEKEMQRILLNSERL 102 (302)
T ss_dssp CHHHHTTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC------CTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCHHHHHHHHHhHHHH
Confidence 34454 4688889999999888 2233223334555554432 111 223333344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 141 QEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 141 ~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
+..+..|-.-+..+.+|...-|.++.+++.++
T Consensus 103 ~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~l 134 (302)
T 2y3a_B 103 KSRIAEIHESRTKLEQDLRAQASDNREIDKRM 134 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhhhhhhhHHHhHHhhh
Confidence 55555555555566666666677766665544
No 390
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=28.24 E-value=1.3e+02 Score=23.60 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 126 LRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 171 (236)
Q Consensus 126 Lr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~q 171 (236)
+.+..+-|+...+.|...++.+.....++++....+...+.+++++
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666656555555555555555555555443
No 391
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=28.02 E-value=68 Score=19.45 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=15.9
Q ss_pred CCchhhhHHHHHHHHHHHHHH
Q 026599 109 KTDKAAILIDAVRMVTQLRSE 129 (236)
Q Consensus 109 K~DKAsIL~dAI~ylkqLr~q 129 (236)
++....+|-+|.+||.+...+
T Consensus 1 ~~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHh
Confidence 356778899999999876553
No 392
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=27.93 E-value=79 Score=20.17 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 140 LQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 140 L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
++++-..|-.|+..|+..+..|+..++.
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555666666666666666665554
No 393
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=27.90 E-value=68 Score=24.09 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=13.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHh
Q 026599 111 DKAAILIDAVRMVTQLRSEAQKLKDS 136 (236)
Q Consensus 111 DKAsIL~dAI~ylkqLr~qv~~Lk~~ 136 (236)
.|-..|.++-+.|.+..+-+++++-+
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE 60 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLE 60 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555554443
No 394
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=27.79 E-value=74 Score=27.24 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEK 143 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~ee 143 (236)
+++-+++-|.+|+.+...|.++|+.|+.+
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666777777777777777777654
No 395
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=27.75 E-value=1.2e+02 Score=23.24 Aligned_cols=39 Identities=8% Similarity=0.051 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
+..-|.+||.++..+..+.-.|..+--.+..+.-+++.+
T Consensus 10 ~~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 10 ILSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345588888888888888777776655555555555443
No 396
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=27.74 E-value=94 Score=23.84 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSL 140 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L 140 (236)
...+-.++|+.++.+|+.++..+
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~st 42 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSI 42 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhHHHHHHHHHHHHHHHHHHhcc
Confidence 34566777888888887766543
No 397
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=27.71 E-value=72 Score=23.46 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
-|.+||.++.++..+.-.|-.+--.+..+.-+++.
T Consensus 13 ~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~ 47 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARM 47 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888877777766665555555555443
No 398
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=27.61 E-value=1.5e+02 Score=25.55 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhhhHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQE 142 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~e 142 (236)
+..||++++.|+.+...|.+
T Consensus 74 ~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665555544
No 399
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.40 E-value=1.7e+02 Score=25.16 Aligned_cols=13 Identities=15% Similarity=0.048 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 026599 162 KAEKEKIEQQLKA 174 (236)
Q Consensus 162 k~ekekLe~qlk~ 174 (236)
..=++-+..+|..
T Consensus 139 ~eGvemi~k~l~~ 151 (213)
T 4ani_A 139 LQGMEMVYRSLVD 151 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444455544
No 400
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=27.37 E-value=3.2e+02 Score=24.04 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
||.|=-..|++++.++..-+..+..-.+.+..+....-.-..+...|+.++..++..+
T Consensus 78 iL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~v 135 (242)
T 3c9i_A 78 ELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRV 135 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccc
Confidence 5777777888888888877776665555555554444444444455555555555544
No 401
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=27.34 E-value=1.1e+02 Score=21.98 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDE 157 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdE 157 (236)
|.+||.++..+..+.-.|-.+--.+..+.-+++.+
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~ 39 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTE 39 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888777777666655555555555443
No 402
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=26.94 E-value=2.7e+02 Score=23.02 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
+|.+=+..|.+|++.|..-|.||..|+
T Consensus 40 ML~EEqgKVDQlqKRn~~HQKEi~~Lr 66 (167)
T 4gkw_A 40 MLREEQGKVDQLQKRNVAHQKEIGKLR 66 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhccHHHHHHHHHH
Confidence 344444445555555444444443333
No 403
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.85 E-value=1.5e+02 Score=20.11 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 026599 160 RLKAEKEKIEQQL 172 (236)
Q Consensus 160 ~Lk~ekekLe~ql 172 (236)
-|+.|+.+||.++
T Consensus 35 nlrdeiarlenev 47 (52)
T 3he5_B 35 NLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666554
No 404
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.76 E-value=2.4e+02 Score=25.93 Aligned_cols=7 Identities=14% Similarity=0.292 Sum_probs=3.0
Q ss_pred ccCcccc
Q 026599 12 DYPLIDD 18 (236)
Q Consensus 12 dy~~~~~ 18 (236)
+|..+++
T Consensus 47 nf~~~~~ 53 (517)
T 4ad8_A 47 NLATITQ 53 (517)
T ss_dssp SBTTBSC
T ss_pred cccceee
Confidence 4444443
No 405
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=26.67 E-value=2.6e+02 Score=22.85 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=4.5
Q ss_pred HHHHHhHHHHhh
Q 026599 89 DRLNDKFVELAS 100 (236)
Q Consensus 89 dkLNerF~eL~s 100 (236)
+..-+++..|..
T Consensus 73 d~yEeqIk~L~~ 84 (155)
T 2efr_A 73 DKYEEEIKVLSD 84 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 406
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=26.64 E-value=96 Score=22.96 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
|.+||.++..+..+.-.|..+--.+..+.-+++
T Consensus 19 L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K 51 (91)
T 1ybz_A 19 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIK 51 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888877777666666545554444444
No 407
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=26.60 E-value=48 Score=25.07 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 113 AAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQL 172 (236)
Q Consensus 113 AsIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ql 172 (236)
+.|++.+.++.++|+++.++|+..+..+.- +.++....+.-.+-...|..=.+.+...+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-L~~is~~l~~~~dl~~il~~i~~~l~~~l 60 (184)
T 3p01_A 2 NAVVQRAAETYDLLKQRTEELRRANAQMSL-LTVLVQVTQASNSLEAILTPIATAFAESF 60 (184)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCSSSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 456777888899999999999887655432 33344444333333334444444444444
No 408
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=26.46 E-value=32 Score=23.81 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 136 SNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 136 ~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
+|..|+.-+..|...--.|..+..-|..++..||.
T Consensus 18 enaklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 45555554444444444444444445445544443
No 409
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=26.19 E-value=2.4e+02 Score=22.18 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 026599 118 DAVRMVTQLRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 118 dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
+....-++|+..++.++...+.|++.|.-+.
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567788888888888888887776554
No 410
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=26.17 E-value=1.3e+02 Score=23.24 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 143 KIKELKAEKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 143 eik~Lk~EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
.|..|..|+-+|......-+-||..|..++.-+
T Consensus 57 ~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 57 TIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 334444444444444444445555555555443
No 411
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=25.95 E-value=75 Score=24.41 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAE 150 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~E 150 (236)
+.+|+.||+.++.+-+.--+-..+..+-.+..+.+
T Consensus 7 ~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~ 41 (105)
T 2f05_A 7 FNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKE 41 (105)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhc
Confidence 57999999999988655333344444444444433
No 412
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=25.80 E-value=71 Score=19.06 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 026599 113 AAILIDAVRMVTQLRSEAQ 131 (236)
Q Consensus 113 AsIL~dAI~ylkqLr~qv~ 131 (236)
.|-|-+|-.|+.||..+..
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4678889999999887543
No 413
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.43 E-value=1.3e+02 Score=21.55 Aligned_cols=42 Identities=12% Similarity=0.247 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHhhC
Q 026599 136 SNSSLQEKIKELKAEKNEL--RDEK---QRLKAEKEKIEQQLKAMST 177 (236)
Q Consensus 136 ~n~~L~eeik~Lk~EknEL--rdEk---~~Lk~ekekLe~qlk~~~~ 177 (236)
+...|..|+..|+.|.+.. +||- ++|.-+.++|..+|+.++.
T Consensus 7 ~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~ 53 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKD 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666643 4443 4888999999999988653
No 414
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=24.96 E-value=44 Score=24.19 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=9.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 026599 128 SEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 128 ~qv~~Lk~~n~~L~eeik~Lk 148 (236)
.+-.+|+...--+++|+.+-+
T Consensus 10 qERNELKa~vf~lqeEL~yY~ 30 (65)
T 1yhn_B 10 QERNELKAKVFLLKEELAYFQ 30 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444443
No 415
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=24.91 E-value=1.9e+02 Score=20.68 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH----HHHH
Q 026599 127 RSEAQKLKDSNSSLQEKIKELKAEKN----ELRD 156 (236)
Q Consensus 127 r~qv~~Lk~~n~~L~eeik~Lk~Ekn----ELrd 156 (236)
+.+.+.|+.+.+.+.+.+..|..|++ .||+
T Consensus 8 KkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRd 41 (75)
T 3mtu_A 8 KKKMQMLKLDKENALDRAEQAEADKDFYFGKLRN 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455566666666666666666655 5554
No 416
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.90 E-value=2.5e+02 Score=22.00 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNEL----RDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknEL----rdEk~~Lk~ekekLe~qlk~~ 175 (236)
-.-++.|+.+..+|++...++..+-++|...-++- ..+.+.|...+..-|+.|+.|
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~L 64 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEEL 64 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666665555555544443332 334556666666666666654
No 417
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=24.88 E-value=1e+02 Score=22.84 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELR 155 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELr 155 (236)
|.+||.++..+..+.-.|-.+--.+..+.-+++
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K 39 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAK 39 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888877777666555555544444
No 418
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=24.73 E-value=31 Score=26.77 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=0.6
Q ss_pred hHHHHhhhc
Q 026599 94 KFVELASIL 102 (236)
Q Consensus 94 rF~eL~slL 102 (236)
.+..|..-|
T Consensus 18 ei~~L~~~L 26 (96)
T 3fx0_A 18 QLEDLKQQL 26 (96)
T ss_dssp --------C
T ss_pred HHHHHHHHH
Confidence 444555555
No 419
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=24.70 E-value=1.2e+02 Score=25.13 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 143 KIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 143 eik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
+++.|+.|+..+++....-+.+...|..|..+
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~va 37 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQSQLQELILQQIA 37 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555555555555555544
No 420
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=24.52 E-value=1e+02 Score=29.84 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026599 154 LRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 154 LrdEk~~Lk~ekekLe~qlk~~ 175 (236)
|.++...|..+...++.+|..+
T Consensus 110 ~~~~i~~~e~~~~~~~~~~~~~ 131 (522)
T 3vbb_A 110 IDEAILKCDAERIKLEAERFEN 131 (522)
T ss_dssp HHHSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777778888763
No 421
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=24.48 E-value=1.1e+02 Score=22.90 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~ 170 (236)
+|..++.+++.....|++++............=-+.|.-+.|++.+
T Consensus 9 ~Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRq 54 (79)
T 1tu3_F 9 TVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQ 54 (79)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666666655554444444444566666666643
No 422
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.33 E-value=1e+02 Score=21.87 Aligned_cols=18 Identities=6% Similarity=0.302 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026599 153 ELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 153 ELrdEk~~Lk~ekekLe~ 170 (236)
.|+.++..|+.+++.|+.
T Consensus 61 ~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 61 YMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455555555555555554
No 423
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=24.23 E-value=1.2e+02 Score=30.79 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026599 158 KQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 158 k~~Lk~ekekLe~qlk~ 174 (236)
...+++++++++.+|..
T Consensus 844 ~~~~~~~~~~~~~~~~~ 860 (862)
T 1gax_A 844 LKENLEQAERIREALSQ 860 (862)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34556666666666654
No 424
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=24.08 E-value=3e+02 Score=23.96 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=10.5
Q ss_pred HHHHHhHHHHhhhcCCC
Q 026599 89 DRLNDKFVELASILEPG 105 (236)
Q Consensus 89 dkLNerF~eL~slL~P~ 105 (236)
++|+.-+.+|+.-|.|.
T Consensus 18 ~~l~~~~eel~~~L~P~ 34 (273)
T 3s84_A 18 EEIGKELEELRARLLPH 34 (273)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 35556667777766554
No 425
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=23.97 E-value=2e+02 Score=21.92 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 026599 121 RMVTQLRSEAQKLKDSNSSLQEKIKELKAEK----NELRDEKQRLKAEKEKIEQ 170 (236)
Q Consensus 121 ~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~Ek----nELrdEk~~Lk~ekekLe~ 170 (236)
+|=.++..|++++.. ++..+-+|...- ....+|..+||.|.+..-.
T Consensus 40 eyE~ki~~Qi~Emq~----Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~ 89 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQ----IRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDH 89 (92)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555666666666654 222222222222 2233466666666654443
No 426
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=23.92 E-value=2.6e+02 Score=21.88 Aligned_cols=50 Identities=16% Similarity=0.378 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 124 TQLRSEAQKLKDSNSSLQE---KIKELKAEKNELRDEKQRLKAEKEKIEQQLK 173 (236)
Q Consensus 124 kqLr~qv~~Lk~~n~~L~e---eik~Lk~EknELrdEk~~Lk~ekekLe~qlk 173 (236)
+.||+--.+|.....++.+ |.+.+.....+|-..+..|..|+-++...++
T Consensus 55 r~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 55 RTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444444444433333332 2333444445565666667777777776665
No 427
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=23.86 E-value=3.4e+02 Score=23.60 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=14.2
Q ss_pred HHHHHHhHHHHhhhcCCCC
Q 026599 88 RDRLNDKFVELASILEPGR 106 (236)
Q Consensus 88 RdkLNerF~eL~slL~P~~ 106 (236)
|++|..+..+|+..+.|-.
T Consensus 127 r~k~~~~leeLr~~l~P~a 145 (273)
T 3s84_A 127 KVKIDQTVEELRRSLAPYA 145 (273)
T ss_dssp HHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhhhHH
Confidence 4578888888888886754
No 428
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=23.78 E-value=17 Score=25.87 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026599 142 EKIKELKAEKNELRDEKQRLK 162 (236)
Q Consensus 142 eeik~Lk~EknELrdEk~~Lk 162 (236)
.+++.|+.|..+|+.|+..||
T Consensus 66 ~ei~~L~~e~~~L~~e~~~Lk 86 (97)
T 2jn6_A 66 EQIRQLKKENALQRARTRHPA 86 (97)
T ss_dssp HHHHHHHHCGGGGGGTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 429
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=23.74 E-value=42 Score=27.31 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=4.4
Q ss_pred HHHHHHHhhhhH
Q 026599 129 EAQKLKDSNSSL 140 (236)
Q Consensus 129 qv~~Lk~~n~~L 140 (236)
++.+|+-.++.+
T Consensus 56 ~~d~L~lQ~esm 67 (130)
T 3cl3_D 56 QVDQLRMQGQSV 67 (130)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 430
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=23.70 E-value=1.1e+02 Score=27.44 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=26.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 135 DSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKA 174 (236)
Q Consensus 135 ~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekekLe~qlk~ 174 (236)
-....|.++.++.+.+.+++.++...+..=+..||+|..+
T Consensus 229 id~~~L~e~A~~~e~~i~~l~~~~~e~~~~V~~LE~~~D~ 268 (319)
T 2p90_A 229 LPLLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDS 268 (319)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 3445666666666677777776666666666777777665
No 431
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=23.14 E-value=1.4e+02 Score=22.30 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
.++++..+...|+..|..|.-.|++|.
T Consensus 50 r~~e~e~r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 50 RAKDLENRQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 334444445555555555555555444
No 432
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=23.02 E-value=54 Score=29.77 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026599 144 IKELKAEKNELRDEKQRLKAEK 165 (236)
Q Consensus 144 ik~Lk~EknELrdEk~~Lk~ek 165 (236)
|+.|....++|+.+.+.|+..+
T Consensus 32 I~~Lq~~le~l~~KIq~Le~~v 53 (328)
T 1fzc_B 32 LRVLRSILENLRSKIQKLESDV 53 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 433
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=23.01 E-value=1.4e+02 Score=21.14 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
|-+--+-|..|-.++.+.+..-..|..++..+...-+||..
T Consensus 7 LveNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~ 47 (64)
T 3t97_C 7 LIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELED 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666666666666666666666666665555543
No 434
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=22.93 E-value=77 Score=24.99 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026599 115 ILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNE 153 (236)
Q Consensus 115 IL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknE 153 (236)
-+.||+.+|+.|++-+. |.+......+-+.+++.+.|+
T Consensus 16 Y~~dT~~Vv~~lr~~l~-l~~d~~~~~~a~~~ar~~ind 53 (115)
T 2kmf_A 16 YSQDTLTVIATLREAID-LPQDAPNRQEVQDTARGQIND 53 (115)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCCCccHHHHHHHHHHHHHH
Confidence 45677777777777666 444433444444555555554
No 435
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=22.63 E-value=48 Score=22.83 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHH
Q 026599 120 VRMVTQLRSEAQKLKDSNSSLQ 141 (236)
Q Consensus 120 I~ylkqLr~qv~~Lk~~n~~L~ 141 (236)
-.||..|+.+++.|+..+..|.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888888888877665553
No 436
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=22.50 E-value=1.8e+02 Score=19.57 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKD 135 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~ 135 (236)
|=+-|..|+.+|.+|+.
T Consensus 10 AERsV~KLek~ID~LEd 26 (52)
T 2z5i_A 10 LENEVARLKKLVDDLED 26 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 437
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=22.11 E-value=2.5e+02 Score=20.94 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSS----LQEKIKELKAEKNELRDEKQRLKAE 164 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~----L~eeik~Lk~EknELrdEk~~Lk~e 164 (236)
..-.+--..+.+|+..++.|.+.+.- -..+|..-+.-..+++.+...|+.+
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555554443 2223344444444555555555543
No 438
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.09 E-value=4.1e+02 Score=25.77 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 026599 160 RLKAEKEKIEQ 170 (236)
Q Consensus 160 ~Lk~ekekLe~ 170 (236)
.|+.||..|+.
T Consensus 571 ~~~~ei~~l~~ 581 (592)
T 1f5n_A 571 IMKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 439
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.87 E-value=55 Score=21.27 Aligned_cols=18 Identities=22% Similarity=0.689 Sum_probs=14.8
Q ss_pred HHHHHhHHHHhhhcCCCC
Q 026599 89 DRLNDKFVELASILEPGR 106 (236)
Q Consensus 89 dkLNerF~eL~slL~P~~ 106 (236)
+++-+++.-|+++|||..
T Consensus 17 ekmeeqldllsaildpsk 34 (40)
T 4h62_K 17 EKMEEQLDLLSAILDPSK 34 (40)
T ss_pred HHHHHHHHHHHHHcCccc
Confidence 455679999999999975
No 440
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=21.70 E-value=2.4e+02 Score=20.65 Aligned_cols=49 Identities=14% Similarity=0.295 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 119 AVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEK 167 (236)
Q Consensus 119 AI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrdEk~~Lk~ekek 167 (236)
|..=|+++-.+++.|..--..+-..+..|.++--.|..+...++..++-
T Consensus 19 a~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~ 67 (72)
T 2xu6_A 19 TMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDF 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4445666666777776655555556666555544454444444444433
No 441
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.58 E-value=2.3e+02 Score=20.35 Aligned_cols=14 Identities=7% Similarity=0.105 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 026599 161 LKAEKEKIEQQLKA 174 (236)
Q Consensus 161 Lk~ekekLe~qlk~ 174 (236)
......+++.-|..
T Consensus 65 W~~~a~~l~~~L~~ 78 (103)
T 4i0x_B 65 WMDAARELVEGLSQ 78 (103)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 442
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=21.57 E-value=1.7e+02 Score=28.13 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=5.8
Q ss_pred HHHHhHHHHhhhc
Q 026599 90 RLNDKFVELASIL 102 (236)
Q Consensus 90 kLNerF~eL~slL 102 (236)
++.+++.-|..++
T Consensus 353 k~~~r~hilegl~ 365 (470)
T 3ilw_A 353 KANERAHILRGLV 365 (470)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444544444433
No 443
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=21.47 E-value=1.5e+02 Score=21.84 Aligned_cols=27 Identities=11% Similarity=0.313 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 026599 157 EKQRLKAEKEKIEQQLKAMSTQPSFLTP 184 (236)
Q Consensus 157 Ek~~Lk~ekekLe~qlk~~~~~p~~~p~ 184 (236)
|...+|..+..+|..++++.. .++.|.
T Consensus 23 ev~t~~~~l~~~e~~vqaL~~-ag~ip~ 49 (74)
T 1avy_A 23 EVNTAKGNISSLQGDVQALQE-AGYIPE 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCCCCC
T ss_pred eeccccchhhhhhhhhHHHHh-cCCCCC
Confidence 334456666677777777543 456554
No 444
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=21.47 E-value=3.4e+02 Score=22.48 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026599 123 VTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRD 156 (236)
Q Consensus 123 lkqLr~qv~~Lk~~n~~L~eeik~Lk~EknELrd 156 (236)
+.+|+.-+.+-+...+.|...|..|-.+.+.+-+
T Consensus 42 i~en~~~iakNqadI~~L~~dI~dLd~~v~l~~R 75 (157)
T 2qih_A 42 ANENKDGIAKNQADIQLHDKKITNLGILHSMVAR 75 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4555444444455555555555554444444433
No 445
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.43 E-value=68 Score=30.00 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026599 144 IKELKAEKNELRDEKQRLKAEKEKIE 169 (236)
Q Consensus 144 ik~Lk~EknELrdEk~~Lk~ekekLe 169 (236)
++.++.+..+|+.+...++.++++|+
T Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 74 LKQRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334344444444444555555544
No 446
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=21.41 E-value=2.8e+02 Score=21.31 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026599 125 QLRSEAQKLKDSNSSLQEKIKELKA-----EKNELRDEKQRLKAEKEKIEQQLKAM 175 (236)
Q Consensus 125 qLr~qv~~Lk~~n~~L~eeik~Lk~-----EknELrdEk~~Lk~ekekLe~qlk~~ 175 (236)
-|..+.+.++.-..-|++|-..|.. ...++-++|..|-.++..++.+...+
T Consensus 12 ~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~ 67 (154)
T 3opc_A 12 CLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDAL 67 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333 23345556666666677666665554
No 447
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=20.97 E-value=2.3e+02 Score=20.22 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHH
Q 026599 122 MVTQLRSEAQKLKDSNSSLQE 142 (236)
Q Consensus 122 ylkqLr~qv~~Lk~~n~~L~e 142 (236)
-++.|+.+...+......|+.
T Consensus 10 kmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 10 KMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566677776666666666
No 448
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.74 E-value=1.6e+02 Score=26.47 Aligned_cols=11 Identities=0% Similarity=-0.173 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 026599 118 DAVRMVTQLRS 128 (236)
Q Consensus 118 dAI~ylkqLr~ 128 (236)
...+|.+.|..
T Consensus 220 ~~~~yf~~l~~ 230 (426)
T 1lrz_A 220 RDDKFYYNRLK 230 (426)
T ss_dssp -CHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 45566666644
No 449
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=20.46 E-value=1.7e+02 Score=20.84 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 026599 116 LIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELK 148 (236)
Q Consensus 116 L~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~Lk 148 (236)
+.||+.||+.++.+-+.-..-..+..+-.+..+
T Consensus 4 ~~dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k 36 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGSDPATYNGFLEIMKEFK 36 (77)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 479999999999876543333334443344433
No 450
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=20.38 E-value=2.9e+02 Score=25.77 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=8.9
Q ss_pred CCcccccccCCCc
Q 026599 210 PGVAMWQFMPPAA 222 (236)
Q Consensus 210 pg~~mwq~~pp~~ 222 (236)
-|+-=||-+||+.
T Consensus 193 sGvHRvqRvp~te 205 (371)
T 1zbt_A 193 SGAHRVQRVPVTE 205 (371)
T ss_dssp CEEEEEEECCTTC
T ss_pred cCeEEEEeecCCC
Confidence 4666777778764
No 451
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=20.34 E-value=2.3e+02 Score=19.81 Aligned_cols=33 Identities=3% Similarity=-0.013 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 026599 114 AILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKE 146 (236)
Q Consensus 114 sIL~dAI~ylkqLr~qv~~Lk~~n~~L~eeik~ 146 (236)
..+..-++-++.|+.++...+.....+.+....
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~ 68 (119)
T 3uun_A 36 EVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSK 68 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344445555555555555555544444443333
No 452
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=20.34 E-value=3.4e+02 Score=26.70 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 026599 83 REKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSN 137 (236)
Q Consensus 83 rER~RRdkLNerF~eL~slL~P~~~~K~DKAsIL~dAI~ylkqLr~qv~~Lk~~n 137 (236)
-||.| .||++.=.++.++. - .-..+.+.++..+.-.+..+.+...+.++.
T Consensus 351 ~~~lr-QRlddArNEItsae-S---aInslqaqvSa~t~e~k~A~d~l~a~~kek 400 (602)
T 1cii_A 351 WDKLR-QRLLDARNKITSAE-S---AVNSARNNLSARTNEQKHANDALNALLKEK 400 (602)
T ss_dssp HHHHH-HHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44544 23444444444444 1 112344445544444444444444443333
No 453
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=20.31 E-value=61 Score=24.95 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 026599 117 IDAVRMVTQLRSEAQKLKDSNSSL 140 (236)
Q Consensus 117 ~dAI~ylkqLr~qv~~Lk~~n~~L 140 (236)
+...+-.++|+.++.+|+.++..+
T Consensus 26 s~~~~~~~~lk~E~~~lk~E~~st 49 (94)
T 3vlc_E 26 NELSKKYLAKVKERHELKEFNNSI 49 (94)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTTS
T ss_pred cHhHHHHHHHHHHHHHHHHHHhcc
Confidence 344566777888888887766543
No 454
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=20.24 E-value=2e+02 Score=21.00 Aligned_cols=8 Identities=25% Similarity=0.260 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 026599 163 AEKEKIEQ 170 (236)
Q Consensus 163 ~ekekLe~ 170 (236)
..++.|+.
T Consensus 95 ~~~~~l~~ 102 (108)
T 2vz4_A 95 KMAAAVEQ 102 (108)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
Done!