Query 026602
Match_columns 236
No_of_seqs 111 out of 1157
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 17:30:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 4.8E-42 1.6E-46 283.2 14.6 204 3-233 82-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 9.4E-41 3.2E-45 274.7 18.3 207 3-231 85-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 3E-38 1E-42 259.8 15.3 194 25-233 4-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.3E-37 4.4E-42 256.7 13.1 183 30-233 3-194 (303)
5 1tlq_A Hypothetical protein YP 29.8 64 0.0022 23.7 4.0 42 5-46 117-160 (189)
6 3tgu_G UQCRQ, mitochondrial ub 29.4 19 0.00065 22.7 1.0 38 198-235 33-70 (81)
7 2acm_A Mucin-1; auto-catalytic 23.0 22 0.00076 20.8 0.4 20 66-85 40-59 (66)
8 1y9i_A Low temperature require 22.0 1.4E+02 0.0049 21.7 4.7 42 4-45 115-159 (178)
9 3cx5_H Cytochrome B-C1 complex 20.9 54 0.0019 21.1 2.0 39 197-235 42-80 (93)
10 1pp9_G Ubiquinol-cytochrome C 18.6 39 0.0013 21.2 0.9 39 197-235 32-70 (81)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.8e-42 Score=283.21 Aligned_cols=204 Identities=23% Similarity=0.346 Sum_probs=182.1
Q ss_pred hhhHHHHHHHhhhhcccCCCcCChhhHHHHHHHHHHHHHHHHhccchhHHHHHHHhcCC---CCCCCcHHHHHHHHHhhc
Q 026602 3 QLLFAFSQVMGSLFCCFAENHINLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGE---PKVYPTMRSAFVDIISTR 79 (236)
Q Consensus 3 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Ple~ik~~~Q~~~~---~~~~~~~~~~~~~i~~~~ 79 (236)
.++|++||.+|+.+....+ ..+....+++|++||+++.++++|+|++|+|+|++.. ...|++.++++++++++|
T Consensus 82 ~i~f~~ye~~k~~~~~~~~---~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 82 SVRIGLYDSVKQFYTKGSE---HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp HHTTTHHHHHHHHHSCCCS---SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCc---CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhc
Confidence 5899999999999865422 3567889999999999999999999999999999863 357899999999999999
Q ss_pred cccccccchhhhHHhHhhhhhhHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCchHHHHHHHhhHhhhhhhhcccHHHH
Q 026602 80 GFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVV 159 (236)
Q Consensus 80 G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~i 159 (236)
|++|||+|+.+.+++.++..+++|.+||.+++.+.+.. .........+++|++||++++++++|+|+|
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~------------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvv 226 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN------------LMTDDLPCHFTSAFGAGFCTTVIASPVDVV 226 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT------------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------CCCCchHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999876541 123456678999999999999999999999
Q ss_pred HHHHHhccccCCCCCCccccccccCCHHHHHHHHHHhhcccccccchhhhhhhhcccchhhHHHHHHHHHHHHh
Q 026602 160 KKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLES 233 (236)
Q Consensus 160 k~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~i~~~~y~~l~~~l~~ 233 (236)
|+|||.+. ...|.+.++|+++++++||++|||||+.++++|.+|..+++|.+||.+|+.+.+
T Consensus 227 ktrlq~~~------------~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 227 KTRYMNSA------------LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHTTCC------------SSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHhcc------------ccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999986 235899999999999999999999999999999999999999999999987654
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=9.4e-41 Score=274.74 Aligned_cols=207 Identities=25% Similarity=0.401 Sum_probs=173.2
Q ss_pred hhhHHHHHHHhhhh-cccCCCc-CChhhHHHHHHHHHHHHHHHHhccchhHHHHHHHhcCC----CCCCCcHHHHHHHHH
Q 026602 3 QLLFAFSQVMGSLF-CCFAENH-INLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGE----PKVYPTMRSAFVDII 76 (236)
Q Consensus 3 ~~~f~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~g~~a~~~~~~i~~Ple~ik~~~Q~~~~----~~~~~~~~~~~~~i~ 76 (236)
.++|++||.+|+.+ .....++ ........+++|++|++++.++++|+|++|+|+|++.. ...|+++++++++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 58999999999954 3222211 12346788999999999999999999999999999853 356899999999999
Q ss_pred hhccccccccchhhhHHhHhhhhhhHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCchHHHHHHHhhHhhhhhhhcccH
Q 026602 77 STRGFRGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPL 156 (236)
Q Consensus 77 ~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~ 156 (236)
++||++|||+|+.+.+++.++..+++|.+||.+++.+.+. ........+++|++||++++++++|+
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--------------~~~~~~~~~~~g~~ag~~a~~~t~P~ 230 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--------------KNVHIIVSWMIAQTVTAVAGLVSYPF 230 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--------------GCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--------------CCccHHHHHHHHHHHHHHHHHhcChH
Confidence 9999999999999999999999999999999999876433 12356778899999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCccccccccCCHHHHHHHHHHhhcccccccchhhhhhhhcccchhhHHHHHHHHHHH
Q 026602 157 DVVKKRFQIEGLQRHPKYGARVEHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWL 231 (236)
Q Consensus 157 d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~i~~~~y~~l~~~l 231 (236)
|+||+|||++.... .....|++.++|+++++++||++|||||+.++++|. +.+++.|.+||.+|+++
T Consensus 231 dvvktr~q~~~~~~-------~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 231 DTVRRRMMMQSGRK-------GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHTTTTCC-------GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHHHhhcCCCC-------CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999999975211 123468999999999999999999999999999996 57899999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3e-38 Score=259.79 Aligned_cols=194 Identities=21% Similarity=0.318 Sum_probs=166.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHhccchhHHHHHHHhcCC------CCCCCcHHHHHHHHHhhccccccccchhhhHHhHhhh
Q 026602 25 NLSAYLSYVSGALAGCAATVGSYPFDLLRTILASQGE------PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPY 98 (236)
Q Consensus 25 ~~~~~~~~~~g~~a~~~~~~i~~Ple~ik~~~Q~~~~------~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~ 98 (236)
..+.+..+++|++||+++.++++|+|++|+|+|++.. ...|+++++++++++++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 4567889999999999999999999999999999853 2468999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCchHHHHHHHhhHhhhhhhhcccHHHHHHHHHhccccCCCCCCccc
Q 026602 99 AGLQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARV 178 (236)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~ik~r~q~~~~~~~~~~~~~~ 178 (236)
.+++|.+||.+++.+..... . ...........+++|++||+++.++++|+|+||+|+|++.... .
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~----~----~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-------~ 148 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVD----R----HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-------A 148 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC----T----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-------T
T ss_pred HHHHHHHHHHHHHHhccccC----c----ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-------C
Confidence 99999999999985433210 0 0001123467889999999999999999999999999986211 1
Q ss_pred cccccCCHHHHHHHHHHhhcccccccchhhhhhhhcccchhhHHHHHHHHHHHHh
Q 026602 179 EHRAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLES 233 (236)
Q Consensus 179 ~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~i~~~~y~~l~~~l~~ 233 (236)
....|.+.++++++++++||++|||||+.++++|.+|.++++|.+||.+|+.+.+
T Consensus 149 ~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 149 AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp TTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred cCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1346899999999999999999999999999999999999999999999997654
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.3e-37 Score=256.72 Aligned_cols=183 Identities=28% Similarity=0.479 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHhcCC---------CCCCCcHHHHHHHHHhhccccccccchhhhHHhHhhhhh
Q 026602 30 LSYVSGALAGCAATVGSYPFDLLRTILASQGE---------PKVYPTMRSAFVDIISTRGFRGLYAGLSPTLVEIIPYAG 100 (236)
Q Consensus 30 ~~~~~g~~a~~~~~~i~~Ple~ik~~~Q~~~~---------~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~ 100 (236)
..+++|++|++++.++++|+|++|+|+|++.. ...|+++++++++++++||+++||+|+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999864 246899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCchHHHHHHHhhHhhhhhhhcccHHHHHHHHHhccccCCCCCCccccc
Q 026602 101 LQFGTYDTFKRWTMDWNRIRSSNTSSTGADNNLSSFQLFVCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPKYGARVEH 180 (236)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~ik~r~q~~~~~~~~~~~~~~~~ 180 (236)
++|.+||.+++.+.+.. ...+....+++|++||+++.++++|+|+||+|+|++... ...
T Consensus 83 i~f~~ye~~k~~~~~~~-------------~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--------~~~ 141 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS-------------EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--------GGG 141 (303)
T ss_dssp HTTTHHHHHHHHHSCCC-------------SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--------CCS
T ss_pred HHHHHHHHHHHHHhcCC-------------cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--------CCC
Confidence 99999999998875430 125677889999999999999999999999999998632 113
Q ss_pred cccCCHHHHHHHHHHhhcccccccchhhhhhhhcccchhhHHHHHHHHHHHHh
Q 026602 181 RAYRNMSDALSRIVQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLES 233 (236)
Q Consensus 181 ~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~i~~~~y~~l~~~l~~ 233 (236)
..|.+.++++++++++||++|||||+.+++++.+|..+++|.+||.+|+.+.+
T Consensus 142 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~ 194 (303)
T 2lck_A 142 RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194 (303)
T ss_dssp SSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999998765
No 5
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=29.78 E-value=64 Score=23.67 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=27.8
Q ss_pred hHHHHHHHh-hhhcccCCC-cCChhhHHHHHHHHHHHHHHHHhc
Q 026602 5 LFAFSQVMG-SLFCCFAEN-HINLSAYLSYVSGALAGCAATVGS 46 (236)
Q Consensus 5 ~f~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~g~~a~~~~~~i~ 46 (236)
+|+.||-.| ..+.....+ +.-.++.-.+++|.+|++++.+.-
T Consensus 117 NfGylDk~KpGIi~~Ld~k~~~v~tFLDDiVgaiaAaaaSRlah 160 (189)
T 1tlq_A 117 NFGYLDKEKIGIIKELDESPDGIHTFLDDIVAALAAAAASRIAH 160 (189)
T ss_dssp HHHHHHHSCCTHHHHTSSSCSCCCTTHHHHHHHHHHHHHHHHHT
T ss_pred ecccccccCcceeccccCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 577777777 333333322 225778889999998888887664
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=29.41 E-value=19 Score=22.66 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=28.1
Q ss_pred cccccccchhhhhhhhcccchhhHHHHHHHHHHHHhhc
Q 026602 198 GWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESIL 235 (236)
Q Consensus 198 G~~gly~G~~~~~~~~~~~~~i~~~~y~~l~~~l~~~~ 235 (236)
|+...+|-+...++..+|..++.+.+|++.++..+..+
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555556778889999999999999988776543
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=23.04 E-value=22 Score=20.76 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.9
Q ss_pred CcHHHHHHHHHhhccccccc
Q 026602 66 PTMRSAFVDIISTRGFRGLY 85 (236)
Q Consensus 66 ~~~~~~~~~i~~~~G~~~ly 85 (236)
+++.+.+.+|++++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788889999999998886
No 8
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=21.98 E-value=1.4e+02 Score=21.66 Aligned_cols=42 Identities=7% Similarity=-0.016 Sum_probs=27.3
Q ss_pred hhHHHHHHHhhhh-c--ccCCCcCChhhHHHHHHHHHHHHHHHHh
Q 026602 4 LLFAFSQVMGSLF-C--CFAENHINLSAYLSYVSGALAGCAATVG 45 (236)
Q Consensus 4 ~~f~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~g~~a~~~~~~i 45 (236)
+.|..+|..|.-- . +...+...-...-.++||..|++++.++
T Consensus 115 ~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 115 TNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp HHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4688888888642 1 1122334556788899999888877544
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=20.88 E-value=54 Score=21.15 Aligned_cols=39 Identities=3% Similarity=0.083 Sum_probs=31.5
Q ss_pred hcccccccchhhhhhhhcccchhhHHHHHHHHHHHHhhc
Q 026602 197 EGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESIL 235 (236)
Q Consensus 197 ~G~~gly~G~~~~~~~~~~~~~i~~~~y~~l~~~l~~~~ 235 (236)
.|+...+|-+..+++..+|..++.+.+|++.++..+..+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~ 80 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLY 80 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHh
Confidence 567777777878888889999999999999988776543
No 10
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=18.63 E-value=39 Score=21.18 Aligned_cols=39 Identities=13% Similarity=0.295 Sum_probs=29.5
Q ss_pred hcccccccchhhhhhhhcccchhhHHHHHHHHHHHHhhc
Q 026602 197 EGWAGLYKGIVPSTVKAAPAGAVTFVAYEYASDWLESIL 235 (236)
Q Consensus 197 ~G~~gly~G~~~~~~~~~~~~~i~~~~y~~l~~~l~~~~ 235 (236)
.|+...+|-+...++..+|..++.+.+|++.++..+..+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~ 70 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHh
Confidence 445556666667777889999999999999988776543
Done!