BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026603
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1T5H1|ADD_MYCVP Adenosine deaminase OS=Mycobacterium vanbaalenii (strain DSM 7251 /
PYR-1) GN=add PE=3 SV=1
Length = 362
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 98 GNGSSSLGK-GPPSREERLSFKLASHCNTEPGSHAEKREKPFSRSERIRFSSLV 150
+G++ LG+ R++R+ F++ N + G+ A E PF R R+RF V
Sbjct: 244 ADGNAKLGRLASLLRDKRIPFEMCPSSNVQTGAVASIAEHPFDRLARLRFRVTV 297
>sp|B3P7K6|ZFPL1_DROER Zinc finger protein-like 1 homolog OS=Drosophila erecta GN=GG12524
PE=3 SV=1
Length = 298
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 180 GSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPP----CPLC 222
G+T+ EQ LVC HV+H DCL R +A P CP C
Sbjct: 57 GTTL---EQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC 100
>sp|Q9VD26|ZFPL1_DROME Zinc finger protein-like 1 homolog OS=Drosophila melanogaster
GN=CG5382 PE=1 SV=1
Length = 299
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 180 GSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPP----CPLC 222
G+T+ EQ LVC HV+H DCL R +A P CP C
Sbjct: 57 GTTL---EQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC 100
>sp|Q298N4|ZFPL1_DROPS Zinc finger protein-like 1 homolog OS=Drosophila pseudoobscura
pseudoobscura GN=GA18838 PE=3 SV=1
Length = 302
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 185 SGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPP----CPLC 222
S EQ LVC HV+H DCL R +A P CP C
Sbjct: 59 SLEQGECVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPGC 100
>sp|Q2U9B0|BRE1_ASPOR E3 ubiquitin-protein ligase bre1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=bre1 PE=3 SV=1
Length = 760
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 191 VAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 222
A+ CGHV+ DC+E+R ++ R CP C
Sbjct: 718 TAIKTCGHVFCKDCVEERLTS---RSRKCPNC 746
>sp|Q8IUD6|RN135_HUMAN E3 ubiquitin-protein ligase RNF135 OS=Homo sapiens GN=RNF135 PE=1
SV=2
Length = 432
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 19/44 (43%)
Query: 179 MGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 222
+G I G A L CGH + CLE A D R CP C
Sbjct: 19 LGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTC 62
>sp|P56450|MC4R_MOUSE Melanocortin receptor 4 OS=Mus musculus GN=Mc4r PE=1 SV=3
Length = 332
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 64 LNAHHHYNLGRSVFLKRSRHHYSHQYSRRNLGNHGNGSSSLGKGPP 109
+N+ HH+ + S+ H ++R + G HGN S SLGKG P
Sbjct: 1 MNSTHHHGMYTSL----------HLWNRSSYGLHGNASESLGKGHP 36
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 20/70 (28%)
Query: 163 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 222
C IC ++ + K+ V VL CGH YH C +Q + CP C
Sbjct: 1957 CEICHEVFKSKN----------------VRVLKCGHKYHKGCFKQWLKGQS----ACPAC 1996
Query: 223 LGSLMQVESS 232
G + E S
Sbjct: 1997 QGRDLLTEES 2006
>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1
SV=1
Length = 758
Score = 32.0 bits (71), Expect = 4.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 187 EQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 226
+QH+ V C HV+H CLE + + CP+C L
Sbjct: 720 DQHSYMVTPCNHVFHTSCLENWMNYK----LQCPVCRSPL 755
>sp|A4TEW1|ADD_MYCGI Adenosine deaminase OS=Mycobacterium gilvum (strain PYR-GCK) GN=add
PE=3 SV=1
Length = 362
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 93 NLGNHGNGSSSLGK-GPPSREERLSFKLASHCNTEPGSHAEKREKPFSRSERIRFSSLV 150
++ G LG+ R++R+ F++ N + G+ A E PF R R+RF V
Sbjct: 239 DIDMDAEGGPKLGRLAALLRDKRIPFEMCPSSNVQTGAVASIAEHPFDRLARLRFRVTV 297
>sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum
GN=LCY1 PE=1 SV=1
Length = 500
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 57 TDNSVKLLNAHHHYNLGRSVFLKRSRHHYSHQYSRRNLGN----HGNGSSSLGKGPPSRE 112
T N+++ LN HH + + S F H++ + LG G+ S+ L P +++
Sbjct: 7 TPNNLEFLNPHHGFAVKASTFRSEKHHNFGSRKFCETLGRSVCVKGSSSALLELVPETKK 66
Query: 113 ERLSFKLASH 122
E L F+L +
Sbjct: 67 ENLDFELPMY 76
>sp|Q6BWW6|BRE1_DEBHA E3 ubiquitin-protein ligase BRE1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=BRE1 PE=3 SV=2
Length = 691
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 192 AVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 222
A+ VCGHV+ + C ++R +A R CP C
Sbjct: 650 AITVCGHVFCSGCTQERLAA---RLRRCPTC 677
>sp|Q5A4X0|BRE1_CANAL E3 ubiquitin-protein ligase BRE1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=BRE1 PE=3 SV=1
Length = 681
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 191 VAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 222
A+ VCGHV+ + C ++R +A R CP C
Sbjct: 639 TAITVCGHVFCSKCTQERLAA---RLRRCPSC 667
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 196 CGHVYHADCLEQRTSAEDIRDPPCPLCLGS-LMQVESSGVQE 236
CGHV+H DC++ S+ CPLC + L + G+QE
Sbjct: 159 CGHVFHVDCVDTWLSSY----VTCPLCRSNQLFSDKDLGMQE 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,484,181
Number of Sequences: 539616
Number of extensions: 3584899
Number of successful extensions: 8126
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 8089
Number of HSP's gapped (non-prelim): 70
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)