Query 026603
Match_columns 236
No_of_seqs 159 out of 1120
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 10:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.4 9.7E-14 2.1E-18 92.9 1.8 44 161-223 1-44 (44)
2 PF12678 zf-rbx1: RING-H2 zinc 99.4 2.4E-13 5.1E-18 101.1 2.5 59 156-223 15-73 (73)
3 PF12861 zf-Apc11: Anaphase-pr 99.2 8.1E-12 1.8E-16 96.3 5.0 66 159-230 20-85 (85)
4 KOG4628 Predicted E3 ubiquitin 99.1 2E-11 4.3E-16 114.6 3.2 52 161-230 230-281 (348)
5 COG5194 APC11 Component of SCF 99.1 5.6E-11 1.2E-15 91.0 4.7 71 154-230 14-84 (88)
6 COG5243 HRD1 HRD ubiquitin lig 99.0 2.8E-10 6E-15 107.8 3.2 63 158-229 285-347 (491)
7 PHA02929 N1R/p28-like protein; 99.0 3.7E-10 8E-15 101.4 3.5 57 159-229 173-229 (238)
8 PF15227 zf-C3HC4_4: zinc fing 98.9 4.8E-10 1E-14 75.4 2.1 42 163-222 1-42 (42)
9 cd00162 RING RING-finger (Real 98.9 1.3E-09 2.8E-14 70.0 3.5 45 162-226 1-45 (45)
10 KOG1493 Anaphase-promoting com 98.9 4.4E-10 9.5E-15 85.5 0.6 70 155-230 15-84 (84)
11 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.2E-09 2.5E-14 71.6 2.3 39 163-222 1-39 (39)
12 KOG2930 SCF ubiquitin ligase, 98.9 1.6E-09 3.4E-14 86.6 3.5 72 154-230 40-111 (114)
13 COG5540 RING-finger-containing 98.9 1.1E-09 2.3E-14 101.6 2.9 51 160-228 323-373 (374)
14 PLN03208 E3 ubiquitin-protein 98.9 2.2E-09 4.9E-14 93.7 4.3 54 159-230 17-82 (193)
15 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.8E-09 6.1E-14 73.1 1.9 47 160-228 2-49 (50)
16 KOG0320 Predicted E3 ubiquitin 98.7 1.5E-08 3.2E-13 87.7 3.8 53 158-230 129-181 (187)
17 smart00504 Ubox Modified RING 98.7 1.4E-08 3E-13 71.4 2.7 48 161-230 2-49 (63)
18 PF00097 zf-C3HC4: Zinc finger 98.6 1.5E-08 3.2E-13 66.3 2.1 41 163-222 1-41 (41)
19 smart00184 RING Ring finger. E 98.6 3.2E-08 7E-13 61.2 3.2 29 191-222 11-39 (39)
20 KOG0802 E3 ubiquitin ligase [P 98.6 1.6E-08 3.5E-13 99.3 2.6 54 159-229 290-343 (543)
21 PF14634 zf-RING_5: zinc-RING 98.6 4E-08 8.6E-13 66.1 3.3 44 162-224 1-44 (44)
22 KOG0317 Predicted E3 ubiquitin 98.6 2.8E-08 6E-13 91.3 3.2 51 159-231 238-288 (293)
23 PF13445 zf-RING_UBOX: RING-ty 98.5 5.6E-08 1.2E-12 66.1 2.1 43 163-220 1-43 (43)
24 PHA02926 zinc finger-like prot 98.5 1.3E-07 2.8E-12 84.6 4.3 63 159-230 169-233 (242)
25 TIGR00599 rad18 DNA repair pro 98.5 1.2E-07 2.6E-12 90.7 3.7 49 159-229 25-73 (397)
26 KOG1734 Predicted RING-contain 98.4 6.3E-08 1.4E-12 88.8 0.0 63 158-230 222-284 (328)
27 KOG0823 Predicted E3 ubiquitin 98.3 2E-07 4.3E-12 83.4 2.2 55 158-231 45-99 (230)
28 KOG0827 Predicted E3 ubiquitin 98.2 1.1E-06 2.3E-11 84.0 2.8 54 160-228 4-57 (465)
29 KOG2164 Predicted E3 ubiquitin 98.1 1E-06 2.2E-11 86.2 2.1 54 160-231 186-240 (513)
30 COG5574 PEX10 RING-finger-cont 98.1 1.4E-06 3.1E-11 79.4 2.8 52 158-231 213-266 (271)
31 KOG2177 Predicted E3 ubiquitin 98.1 1.3E-06 2.8E-11 73.1 2.3 45 158-224 11-55 (386)
32 KOG0287 Postreplication repair 98.1 1.6E-06 3.6E-11 81.8 2.3 50 159-230 22-71 (442)
33 KOG0828 Predicted E3 ubiquitin 98.1 1.8E-06 3.9E-11 84.6 2.3 64 159-228 570-635 (636)
34 PF04564 U-box: U-box domain; 98.1 2.4E-06 5.2E-11 63.2 2.4 52 159-231 3-54 (73)
35 smart00744 RINGv The RING-vari 98.0 8.1E-06 1.8E-10 56.6 3.5 30 192-223 15-49 (49)
36 KOG0804 Cytoplasmic Zn-finger 97.9 6.6E-06 1.4E-10 79.8 2.4 50 158-227 173-222 (493)
37 TIGR00570 cdk7 CDK-activating 97.9 1E-05 2.2E-10 75.4 3.4 57 158-230 1-57 (309)
38 PF11793 FANCL_C: FANCL C-term 97.7 3.4E-06 7.5E-11 62.4 -1.4 57 161-229 3-68 (70)
39 KOG0825 PHD Zn-finger protein 97.7 4E-05 8.8E-10 78.7 4.8 54 159-231 122-175 (1134)
40 COG5432 RAD18 RING-finger-cont 97.7 1.8E-05 4E-10 73.6 2.0 49 160-230 25-73 (391)
41 KOG1941 Acetylcholine receptor 97.4 8E-05 1.7E-09 71.7 2.2 53 159-227 364-416 (518)
42 KOG0978 E3 ubiquitin ligase in 97.4 7E-05 1.5E-09 76.2 1.9 52 159-231 642-693 (698)
43 KOG1645 RING-finger-containing 97.4 6E-05 1.3E-09 72.6 1.2 56 159-229 3-58 (463)
44 PF10367 Vps39_2: Vacuolar sor 97.2 7.2E-05 1.6E-09 57.1 -0.4 32 159-206 77-108 (109)
45 KOG1039 Predicted E3 ubiquitin 97.2 0.00024 5.1E-09 67.3 2.7 63 158-231 159-225 (344)
46 COG5219 Uncharacterized conser 97.2 0.00024 5.2E-09 74.5 2.7 57 159-228 1468-1524(1525)
47 KOG0311 Predicted E3 ubiquitin 97.0 0.00024 5.2E-09 67.4 0.8 51 160-230 43-93 (381)
48 PF11789 zf-Nse: Zinc-finger o 96.9 0.00051 1.1E-08 49.2 1.6 45 158-221 9-53 (57)
49 KOG4265 Predicted E3 ubiquitin 96.9 0.00072 1.6E-08 64.1 2.9 47 160-228 290-337 (349)
50 KOG2879 Predicted E3 ubiquitin 96.9 0.00079 1.7E-08 62.2 3.1 62 155-235 234-295 (298)
51 KOG0824 Predicted E3 ubiquitin 96.7 0.00085 1.8E-08 62.6 2.2 53 157-230 4-56 (324)
52 KOG4159 Predicted E3 ubiquitin 96.7 0.00071 1.5E-08 65.2 1.7 48 159-228 83-130 (398)
53 COG5152 Uncharacterized conser 96.5 0.0011 2.4E-08 59.2 1.5 44 161-226 197-240 (259)
54 KOG4172 Predicted E3 ubiquitin 96.5 0.00081 1.8E-08 48.7 0.4 46 161-228 8-55 (62)
55 PF14835 zf-RING_6: zf-RING of 96.4 0.00079 1.7E-08 49.9 -0.2 49 160-231 7-55 (65)
56 KOG3970 Predicted E3 ubiquitin 96.2 0.0037 8.1E-08 56.8 3.2 53 161-229 51-107 (299)
57 KOG0297 TNF receptor-associate 96.2 0.0017 3.6E-08 62.1 0.7 51 159-230 20-70 (391)
58 KOG3039 Uncharacterized conser 96.1 0.0036 7.9E-08 57.4 2.5 57 159-233 220-276 (303)
59 KOG4445 Uncharacterized conser 96.1 0.0024 5.1E-08 59.9 1.3 59 158-231 113-190 (368)
60 KOG1940 Zn-finger protein [Gen 96.1 0.0032 6.9E-08 58.1 2.1 47 160-224 158-204 (276)
61 KOG2034 Vacuolar sorting prote 96.0 0.0033 7.3E-08 65.5 2.1 34 160-209 817-850 (911)
62 KOG1785 Tyrosine kinase negati 95.9 0.0031 6.7E-08 61.3 1.3 50 159-228 368-417 (563)
63 PF04641 Rtf2: Rtf2 RING-finge 95.9 0.006 1.3E-07 55.1 2.8 55 158-231 111-165 (260)
64 KOG1002 Nucleotide excision re 95.7 0.009 2E-07 59.9 3.5 55 157-229 533-588 (791)
65 COG5236 Uncharacterized conser 95.5 0.0095 2.1E-07 57.1 2.9 54 156-229 57-110 (493)
66 PHA02825 LAP/PHD finger-like p 95.5 0.014 3E-07 50.2 3.6 53 157-230 5-62 (162)
67 KOG2660 Locus-specific chromos 95.3 0.0054 1.2E-07 57.8 0.5 51 159-230 14-64 (331)
68 KOG1813 Predicted E3 ubiquitin 94.9 0.0062 1.3E-07 56.8 -0.3 46 159-226 240-285 (313)
69 KOG1428 Inhibitor of type V ad 94.9 0.017 3.7E-07 63.5 2.8 38 190-227 3501-3544(3738)
70 KOG4185 Predicted E3 ubiquitin 94.6 0.023 5E-07 51.3 2.5 51 161-226 4-54 (296)
71 PHA02862 5L protein; Provision 94.5 0.034 7.3E-07 47.4 3.0 30 199-230 27-56 (156)
72 PF14447 Prok-RING_4: Prokaryo 94.3 0.014 3E-07 42.0 0.3 33 192-230 21-53 (55)
73 COG5222 Uncharacterized conser 94.3 0.029 6.3E-07 53.0 2.4 44 161-224 275-318 (427)
74 KOG2114 Vacuolar assembly/sort 94.1 0.027 5.9E-07 58.8 2.0 43 160-226 840-882 (933)
75 PF05883 Baculo_RING: Baculovi 94.0 0.047 1E-06 45.7 2.9 36 160-210 26-67 (134)
76 KOG4275 Predicted E3 ubiquitin 93.8 0.0084 1.8E-07 56.2 -2.1 44 159-228 299-343 (350)
77 KOG0827 Predicted E3 ubiquitin 93.6 0.0059 1.3E-07 59.0 -3.5 54 158-229 194-247 (465)
78 KOG1571 Predicted E3 ubiquitin 93.4 0.035 7.6E-07 52.9 1.4 45 159-228 304-348 (355)
79 KOG4692 Predicted E3 ubiquitin 93.4 0.062 1.3E-06 51.8 2.9 61 153-235 415-475 (489)
80 PF12906 RINGv: RING-variant d 92.9 0.029 6.3E-07 38.5 -0.0 22 199-222 26-47 (47)
81 PF07800 DUF1644: Protein of u 92.9 0.079 1.7E-06 45.6 2.5 12 216-227 80-91 (162)
82 KOG1814 Predicted E3 ubiquitin 92.3 0.12 2.5E-06 50.5 3.1 50 159-223 183-236 (445)
83 KOG1952 Transcription factor N 92.2 0.09 2E-06 55.1 2.5 54 159-226 190-246 (950)
84 PHA03096 p28-like protein; Pro 92.1 0.12 2.6E-06 48.0 2.9 55 161-226 179-236 (284)
85 PF14570 zf-RING_4: RING/Ubox 91.2 0.17 3.8E-06 35.4 2.2 48 163-227 1-48 (48)
86 KOG3268 Predicted E3 ubiquitin 91.1 0.14 3.1E-06 45.3 2.1 38 193-230 187-231 (234)
87 KOG1001 Helicase-like transcri 90.9 0.086 1.9E-06 54.1 0.8 48 161-229 455-502 (674)
88 KOG0309 Conserved WD40 repeat- 88.7 0.21 4.7E-06 52.1 1.5 24 194-221 1046-1069(1081)
89 KOG0801 Predicted E3 ubiquitin 88.6 0.13 2.7E-06 44.9 -0.1 29 159-202 176-204 (205)
90 KOG0826 Predicted E3 ubiquitin 87.6 0.29 6.3E-06 46.6 1.6 49 157-226 297-345 (357)
91 COG5175 MOT2 Transcriptional r 86.9 0.65 1.4E-05 44.8 3.5 56 159-231 13-68 (480)
92 KOG3800 Predicted E3 ubiquitin 85.8 0.75 1.6E-05 43.1 3.2 34 192-228 19-52 (300)
93 KOG0298 DEAD box-containing he 85.6 0.37 8.1E-06 52.6 1.3 46 159-225 1152-1197(1394)
94 PF08746 zf-RING-like: RING-li 85.4 0.31 6.8E-06 32.9 0.4 26 195-222 18-43 (43)
95 smart00249 PHD PHD zinc finger 84.9 0.4 8.6E-06 30.5 0.7 29 194-222 18-47 (47)
96 KOG2932 E3 ubiquitin ligase in 84.3 0.31 6.7E-06 46.3 0.0 47 160-229 90-136 (389)
97 KOG3161 Predicted E3 ubiquitin 84.2 0.54 1.2E-05 48.4 1.7 46 159-225 10-55 (861)
98 KOG1829 Uncharacterized conser 84.1 0.49 1.1E-05 48.0 1.3 32 187-225 528-559 (580)
99 KOG1812 Predicted E3 ubiquitin 82.4 0.68 1.5E-05 44.5 1.5 56 159-228 145-204 (384)
100 KOG2817 Predicted E3 ubiquitin 81.8 0.85 1.8E-05 44.2 1.9 38 192-230 351-388 (394)
101 PF03854 zf-P11: P-11 zinc fin 81.3 0.46 1E-05 33.5 -0.0 34 193-230 15-49 (50)
102 COG5183 SSM4 Protein involved 81.3 1.1 2.4E-05 47.4 2.6 56 158-231 10-70 (1175)
103 KOG3113 Uncharacterized conser 80.8 0.93 2E-05 42.0 1.7 36 190-231 127-162 (293)
104 PF05290 Baculo_IE-1: Baculovi 80.8 3 6.4E-05 35.2 4.5 58 159-231 79-136 (140)
105 KOG2066 Vacuolar assembly/sort 78.0 0.81 1.8E-05 47.9 0.5 50 160-225 784-833 (846)
106 KOG3053 Uncharacterized conser 76.1 1.8 3.9E-05 40.2 2.1 58 158-229 18-84 (293)
107 KOG1100 Predicted E3 ubiquitin 75.8 0.9 2E-05 40.2 0.1 29 190-226 170-199 (207)
108 PF04710 Pellino: Pellino; In 74.3 1 2.2E-05 43.9 0.0 63 161-230 278-342 (416)
109 PF10272 Tmpp129: Putative tra 74.0 2.5 5.5E-05 40.6 2.6 36 196-231 311-355 (358)
110 PF05605 zf-Di19: Drought indu 72.1 3.2 7E-05 28.7 2.2 14 160-173 2-15 (54)
111 PLN02189 cellulose synthase 71.4 3.7 8.1E-05 44.4 3.4 57 157-227 31-87 (1040)
112 PF04710 Pellino: Pellino; In 71.3 1.3 2.8E-05 43.2 0.0 69 160-228 328-402 (416)
113 KOG3899 Uncharacterized conser 70.2 3.1 6.7E-05 39.5 2.2 37 195-231 324-369 (381)
114 PF14446 Prok-RING_1: Prokaryo 69.9 3.3 7.1E-05 29.8 1.8 35 159-207 4-38 (54)
115 PLN02436 cellulose synthase A 68.4 4.7 0.0001 43.8 3.3 57 157-227 33-89 (1094)
116 PF06906 DUF1272: Protein of u 68.0 6.4 0.00014 28.6 2.9 47 162-230 7-55 (57)
117 KOG4367 Predicted Zn-finger pr 67.2 3.6 7.8E-05 41.1 2.0 35 159-211 3-37 (699)
118 PF00628 PHD: PHD-finger; Int 65.5 0.41 8.9E-06 32.2 -3.4 33 192-224 16-50 (51)
119 KOG0269 WD40 repeat-containing 65.3 3.6 7.7E-05 43.2 1.7 24 194-221 797-820 (839)
120 KOG3842 Adaptor protein Pellin 64.7 5.6 0.00012 38.3 2.7 70 160-229 341-416 (429)
121 PF13901 DUF4206: Domain of un 64.7 3.9 8.4E-05 35.8 1.6 27 189-224 171-197 (202)
122 PLN02400 cellulose synthase 64.2 7.8 0.00017 42.2 4.0 57 157-227 33-89 (1085)
123 PLN02638 cellulose synthase A 63.2 7.3 0.00016 42.4 3.6 57 157-227 14-70 (1079)
124 KOG2068 MOT2 transcription fac 63.1 4.3 9.4E-05 38.6 1.7 51 161-229 250-300 (327)
125 PF04423 Rad50_zn_hook: Rad50 58.9 3.2 7E-05 28.7 0.0 28 203-230 7-34 (54)
126 PF02891 zf-MIZ: MIZ/SP-RING z 57.3 8.8 0.00019 26.5 2.0 34 190-224 15-49 (50)
127 KOG3002 Zn finger protein [Gen 57.2 5.8 0.00013 37.2 1.5 46 157-228 45-92 (299)
128 COG5109 Uncharacterized conser 55.9 6.5 0.00014 37.7 1.5 50 160-225 336-385 (396)
129 KOG4185 Predicted E3 ubiquitin 55.8 2.8 6.2E-05 37.8 -0.8 51 160-225 207-265 (296)
130 KOG4718 Non-SMC (structural ma 55.5 7.8 0.00017 35.2 1.9 47 159-226 180-226 (235)
131 KOG3842 Adaptor protein Pellin 53.4 8.5 0.00018 37.0 1.9 63 162-231 292-356 (429)
132 KOG1609 Protein involved in mR 53.3 8.7 0.00019 34.2 1.9 54 160-229 78-136 (323)
133 KOG4362 Transcriptional regula 53.1 4.5 9.8E-05 41.9 0.0 52 160-230 21-72 (684)
134 PF14569 zf-UDP: Zinc-binding 52.1 15 0.00033 28.3 2.7 58 157-228 6-63 (80)
135 PLN02915 cellulose synthase A 51.5 11 0.00024 40.9 2.6 56 158-227 13-68 (1044)
136 KOG4739 Uncharacterized protei 50.9 8 0.00017 35.2 1.3 21 190-210 17-37 (233)
137 KOG1815 Predicted E3 ubiquitin 50.8 12 0.00025 36.4 2.5 36 158-210 68-103 (444)
138 PLN02195 cellulose synthase A 49.9 16 0.00034 39.6 3.3 55 159-227 5-59 (977)
139 KOG2071 mRNA cleavage and poly 48.4 6.9 0.00015 39.9 0.5 48 150-208 504-556 (579)
140 COG3813 Uncharacterized protei 43.3 16 0.00034 28.2 1.6 28 197-230 28-55 (84)
141 KOG0825 PHD Zn-finger protein 42.8 18 0.00038 38.7 2.4 58 158-226 94-153 (1134)
142 cd00350 rubredoxin_like Rubred 42.5 7.5 0.00016 24.6 -0.2 21 195-225 6-26 (33)
143 COG5220 TFB3 Cdk activating ki 40.7 22 0.00048 33.1 2.4 53 158-226 8-63 (314)
144 KOG1729 FYVE finger containing 38.8 6.9 0.00015 36.6 -1.1 60 153-228 161-226 (288)
145 KOG2113 Predicted RNA binding 36.2 24 0.00053 33.9 2.1 30 190-225 355-385 (394)
146 PF12088 DUF3565: Protein of u 34.3 17 0.00038 26.7 0.6 19 190-208 11-29 (61)
147 KOG0824 Predicted E3 ubiquitin 34.3 10 0.00022 36.0 -0.8 57 155-232 100-156 (324)
148 KOG3799 Rab3 effector RIM1 and 34.2 9 0.00019 32.7 -1.0 46 158-225 63-116 (169)
149 KOG0802 E3 ubiquitin ligase [P 30.5 32 0.00069 34.4 1.9 46 160-231 479-524 (543)
150 PRK11088 rrmA 23S rRNA methylt 29.7 19 0.00042 32.0 0.2 12 161-172 3-14 (272)
151 KOG3005 GIY-YIG type nuclease 29.0 70 0.0015 30.0 3.7 56 160-226 182-242 (276)
152 smart00064 FYVE Protein presen 27.3 35 0.00076 24.1 1.2 40 158-211 8-47 (68)
153 PF14311 DUF4379: Domain of un 27.0 27 0.00057 24.1 0.5 23 195-222 33-55 (55)
154 KOG3039 Uncharacterized conser 26.6 33 0.00071 32.1 1.2 34 159-210 42-75 (303)
155 PF07649 C1_3: C1-like domain; 26.1 37 0.00081 20.7 1.0 29 162-205 2-30 (30)
156 KOG1815 Predicted E3 ubiquitin 25.9 31 0.00067 33.6 0.9 37 194-230 182-240 (444)
157 PF07191 zinc-ribbons_6: zinc- 25.3 3.9 8.4E-05 30.8 -4.2 31 197-232 16-46 (70)
158 PF13717 zinc_ribbon_4: zinc-r 24.5 28 0.00062 22.5 0.3 34 161-201 3-36 (36)
159 smart00734 ZnF_Rad18 Rad18-lik 24.1 36 0.00077 20.6 0.6 10 217-226 2-11 (26)
160 PF10571 UPF0547: Uncharacteri 24.0 37 0.0008 20.7 0.7 11 162-172 2-12 (26)
161 PF09723 Zn-ribbon_8: Zinc rib 23.5 17 0.00037 24.1 -0.9 26 194-224 9-34 (42)
162 PRK11827 hypothetical protein; 22.6 32 0.0007 25.1 0.3 14 217-230 9-22 (60)
163 PF05191 ADK_lid: Adenylate ki 21.2 29 0.00063 22.6 -0.2 29 195-229 6-34 (36)
164 PF01363 FYVE: FYVE zinc finge 20.3 16 0.00035 25.9 -1.7 41 156-210 5-45 (69)
165 KOG3579 Predicted E3 ubiquitin 20.2 36 0.00079 32.4 0.2 48 159-220 267-315 (352)
166 cd00065 FYVE FYVE domain; Zinc 20.1 49 0.0011 22.3 0.8 36 161-210 3-38 (57)
167 KOG4021 Mitochondrial ribosoma 20.0 48 0.001 30.0 0.9 27 201-230 96-122 (239)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.39 E-value=9.7e-14 Score=92.85 Aligned_cols=44 Identities=32% Similarity=0.799 Sum_probs=36.0
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccc
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCL 223 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR 223 (236)
+.|+||++.|.... .+.+++|||+||.+||.+|+.. +..||+||
T Consensus 1 d~C~IC~~~~~~~~---------------~~~~l~C~H~fh~~Ci~~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGE---------------KVVKLPCGHVFHRSCIKEWLKR----NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTS---------------CEEEETTSEEEEHHHHHHHHHH----SSB-TTTH
T ss_pred CCCcCCChhhcCCC---------------eEEEccCCCeeCHHHHHHHHHh----CCcCCccC
Confidence 36999999998754 3567899999999999999983 46999997
No 2
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.36 E-value=2.4e-13 Score=101.07 Aligned_cols=59 Identities=25% Similarity=0.574 Sum_probs=42.0
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccc
Q 026603 156 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCL 223 (236)
Q Consensus 156 p~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR 223 (236)
.+.+.+.|+||++.|.+..+.. .+..+...+++++|||+||..||.+|+. ...+||+||
T Consensus 15 ~~~~~d~C~IC~~~l~~~~~~~-----~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~----~~~~CP~CR 73 (73)
T PF12678_consen 15 WDIADDNCAICREPLEDPCPEC-----QAPQDECPIVWGPCGHIFHFHCISQWLK----QNNTCPLCR 73 (73)
T ss_dssp ESSCCSBETTTTSBTTSTTCCH-----HHCTTTS-EEEETTSEEEEHHHHHHHHT----TSSB-TTSS
T ss_pred ecCcCCcccccChhhhChhhhh-----cCCccccceEecccCCCEEHHHHHHHHh----cCCcCCCCC
Confidence 3445667999999997654311 1122334567789999999999999998 556999997
No 3
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.25 E-value=8.1e-12 Score=96.31 Aligned_cols=66 Identities=23% Similarity=0.485 Sum_probs=51.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.++.|+||...|....+ ....++.+.+ +.+..|+|.||.+||.+|+.... .+..||+||+++..++
T Consensus 20 ~dd~CgICr~~fdg~Cp----~Ck~Pgd~Cp-lv~g~C~H~FH~hCI~kWl~~~~-~~~~CPmCR~~w~~k~ 85 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCP----DCKFPGDDCP-LVWGKCSHNFHMHCILKWLSTQS-SKGQCPMCRQPWKFKE 85 (85)
T ss_pred CCCceeeEecccccCCC----CccCCCCCCc-eeeccCccHHHHHHHHHHHcccc-CCCCCCCcCCeeeeCC
Confidence 47799999999997654 3445554554 45778999999999999998543 3579999999987664
No 4
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2e-11 Score=114.56 Aligned_cols=52 Identities=21% Similarity=0.620 Sum_probs=44.3
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+|+||+|+|+.++ .+++|||+|.||..||+.||.+ ..-.||+|+..+.+..
T Consensus 230 ~~CaIClEdY~~Gd---------------klRiLPC~H~FH~~CIDpWL~~---~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLEDYEKGD---------------KLRILPCSHKFHVNCIDPWLTQ---TRTFCPVCKRDIRTDS 281 (348)
T ss_pred ceEEEeecccccCC---------------eeeEecCCCchhhccchhhHhh---cCccCCCCCCcCCCCC
Confidence 39999999999987 5688999999999999999984 3356999999876544
No 5
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.13 E-value=5.6e-11 Score=90.99 Aligned_cols=71 Identities=23% Similarity=0.383 Sum_probs=58.4
Q ss_pred CCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 154 ASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 154 ~Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+.+...++|+||...+.+..+.+ +.-...++..+++...|.|.||.+||.+||. .+..||+|++++...+
T Consensus 14 Wswdi~id~CaICRnhim~~C~eC--q~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~----Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 14 WSWDIPIDVCAICRNHIMGTCPEC--QFGMTPGDECPVVWGVCNHAFHDHCIYRWLD----TKGVCPLDRQTWVLAD 84 (88)
T ss_pred EecccccchhhhhhccccCcCccc--ccCCCCCCcceEEEEecchHHHHHHHHHHHh----hCCCCCCCCceeEEec
Confidence 456667789999999999988765 3334566667788889999999999999998 5689999999987765
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.8e-10 Score=107.82 Aligned_cols=63 Identities=24% Similarity=0.527 Sum_probs=46.0
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
.++.+|.||++.+-..+. +....+-+. ....|+|||.||.+||..|++ +..+|||||.++--.
T Consensus 285 n~D~~C~ICmde~~h~~~----~~~~~~~~~-~pKrLpCGHilHl~CLknW~E----RqQTCPICr~p~ifd 347 (491)
T COG5243 285 NSDRTCTICMDEMFHPDH----EPLPRGLDM-TPKRLPCGHILHLHCLKNWLE----RQQTCPICRRPVIFD 347 (491)
T ss_pred CCCCeEEEecccccCCCC----ccCcccccC-CcccccccceeeHHHHHHHHH----hccCCCcccCccccc
Confidence 367899999999655431 222222233 336699999999999999999 668999999985433
No 7
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.96 E-value=3.7e-10 Score=101.37 Aligned_cols=57 Identities=21% Similarity=0.506 Sum_probs=42.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
....|+||++.+.+.... ......+++|||+||.+||.+|+. ...+||+||..+...
T Consensus 173 ~~~eC~ICle~~~~~~~~----------~~~~~vl~~C~H~FC~~CI~~Wl~----~~~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIK----------NMYFGILSNCNHVFCIECIDIWKK----EKNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccc----------cccceecCCCCCcccHHHHHHHHh----cCCCCCCCCCEeeEE
Confidence 457899999987764310 011234458999999999999998 567999999987643
No 8
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.92 E-value=4.8e-10 Score=75.41 Aligned_cols=42 Identities=33% Similarity=0.754 Sum_probs=32.0
Q ss_pred cccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccc
Q 026603 163 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 222 (236)
Q Consensus 163 C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPIC 222 (236)
|+||++.|++. ..|+|||+|...||++|+...+.....||+|
T Consensus 1 CpiC~~~~~~P------------------v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP------------------VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE------------------EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc------------------cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999885 5589999999999999998665555789998
No 9
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.90 E-value=1.3e-09 Score=69.97 Aligned_cols=45 Identities=33% Similarity=0.862 Sum_probs=35.7
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCc
Q 026603 162 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 226 (236)
Q Consensus 162 ~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l 226 (236)
.|+||.+.+.. .+.+++|||.||..||+.|+.. ....||+|+..+
T Consensus 1 ~C~iC~~~~~~-----------------~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE-----------------PVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC-----------------ceEecCCCChhcHHHHHHHHHh---CcCCCCCCCCcC
Confidence 49999988722 2355679999999999999983 357899999764
No 10
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.4e-10 Score=85.50 Aligned_cols=70 Identities=21% Similarity=0.444 Sum_probs=53.4
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 155 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 155 Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
..+...++|+||..+|....+ ....++++.+. .+..|.|.||++||.+|+... ..+..||+||+++..++
T Consensus 15 tW~~~~e~CGiCRm~Fdg~Cp----~Ck~PgDdCPL-v~G~C~h~fh~hCI~~wl~~~-tsq~~CPmcRq~~~~~e 84 (84)
T KOG1493|consen 15 TWDAPDETCGICRMPFDGCCP----DCKLPGDDCPL-VWGYCLHAFHAHCILKWLNTP-TSQGQCPMCRQTWQFKE 84 (84)
T ss_pred EEcCCCCccceEecccCCcCC----CCcCCCCCCcc-HHHHHHHHHHHHHHHHHhcCc-cccccCCcchheeEecC
Confidence 445556699999999998775 44566666655 445899999999999999743 34578999999987653
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.86 E-value=1.2e-09 Score=71.61 Aligned_cols=39 Identities=41% Similarity=1.059 Sum_probs=31.4
Q ss_pred cccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccc
Q 026603 163 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 222 (236)
Q Consensus 163 C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPIC 222 (236)
|+||++.+.+ .+.+++|||+|+.+|+++|+. .+..||+|
T Consensus 1 C~iC~~~~~~-----------------~~~~~~CGH~fC~~C~~~~~~----~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----------------PVVVTPCGHSFCKECIEKYLE----KNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----------------EEEECTTSEEEEHHHHHHHHH----CTSB-TTT
T ss_pred CCCCCCcccC-----------------cCEECCCCCchhHHHHHHHHH----CcCCCcCC
Confidence 8899887666 246789999999999999999 35799998
No 12
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.6e-09 Score=86.62 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=58.8
Q ss_pred CCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 154 ASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 154 ~Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+.++..++|+||...+.+....+ ++...+..+..+|+...|.|.||..||.+|+. ....||+|.+++..-.
T Consensus 40 WaWDi~vDnCAICRnHIMd~CieC-Qa~~~~~~~EC~VaWG~CNHaFH~hCisrWlk----tr~vCPLdn~eW~~qr 111 (114)
T KOG2930|consen 40 WAWDIVVDNCAICRNHIMDLCIEC-QANQSATSEECTVAWGVCNHAFHFHCISRWLK----TRNVCPLDNKEWVFQR 111 (114)
T ss_pred eeeeeeechhHHHHHHHHHHHHhh-ccCCCCCCCceEEEeeecchHHHHHHHHHHHh----hcCcCCCcCcceeEee
Confidence 367889999999999998877665 33334556777889999999999999999999 6689999999886543
No 13
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.1e-09 Score=101.60 Aligned_cols=51 Identities=24% Similarity=0.628 Sum_probs=43.1
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
...|+||+..|...+ .+.+|||.|+||..|++.|+. .+...||+||.++.+
T Consensus 323 GveCaICms~fiK~d---------------~~~vlPC~H~FH~~Cv~kW~~---~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKND---------------RLRVLPCDHRFHVGCVDKWLL---GYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccc---------------eEEEeccCceechhHHHHHHh---hhcccCCccCCCCCC
Confidence 468999999986433 368899999999999999987 267899999999875
No 14
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.85 E-value=2.2e-09 Score=93.75 Aligned_cols=54 Identities=28% Similarity=0.685 Sum_probs=41.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC------------CCCCCCCcccccCc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE------------DIRDPPCPLCLGSL 226 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~------------~~~~p~CPICR~~l 226 (236)
+...|+||++.+++. .+++|||+||..||.+|+... ....+.||+||..+
T Consensus 17 ~~~~CpICld~~~dP------------------VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 17 GDFDCNICLDQVRDP------------------VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred CccCCccCCCcCCCc------------------EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 456899999876543 457899999999999998521 22457899999998
Q ss_pred ccCC
Q 026603 227 MQVE 230 (236)
Q Consensus 227 ~~k~ 230 (236)
....
T Consensus 79 s~~~ 82 (193)
T PLN03208 79 SEAT 82 (193)
T ss_pred Chhc
Confidence 6543
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.77 E-value=2.8e-09 Score=73.09 Aligned_cols=47 Identities=32% Similarity=0.755 Sum_probs=37.1
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHv-FH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
+..|.||++... .+.+++|||+ |+..|+.+|+. ....||+||.++..
T Consensus 2 ~~~C~iC~~~~~------------------~~~~~pCgH~~~C~~C~~~~~~----~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR------------------DVVLLPCGHLCFCEECAERLLK----RKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS------------------SEEEETTCEEEEEHHHHHHHHH----TTSBBTTTTBB-SE
T ss_pred cCCCccCCccCC------------------ceEEeCCCChHHHHHHhHHhcc----cCCCCCcCChhhcC
Confidence 457999987532 2477899999 99999999998 66899999998764
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.5e-08 Score=87.73 Aligned_cols=53 Identities=23% Similarity=0.579 Sum_probs=43.7
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.....|+||++.+.++.+ .-..|||||+.+||+.-+. ....||+|++.+..++
T Consensus 129 ~~~~~CPiCl~~~sek~~----------------vsTkCGHvFC~~Cik~alk----~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP----------------VSTKCGHVFCSQCIKDALK----NTNKCPTCRKKITHKQ 181 (187)
T ss_pred ccccCCCceecchhhccc----------------cccccchhHHHHHHHHHHH----hCCCCCCcccccchhh
Confidence 356789999999998742 2258999999999999998 5578999999877664
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.66 E-value=1.4e-08 Score=71.38 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=40.1
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
..|+||++.+++. .+++|||+|..+||++|+.. +..||+|+..+...+
T Consensus 2 ~~Cpi~~~~~~~P------------------v~~~~G~v~~~~~i~~~~~~----~~~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDP------------------VILPSGQTYERRAIEKWLLS----HGTDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCC------------------EECCCCCEEeHHHHHHHHHH----CCCCCCCcCCCChhh
Confidence 3699999987763 45799999999999999983 578999999986554
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.64 E-value=1.5e-08 Score=66.29 Aligned_cols=41 Identities=37% Similarity=0.862 Sum_probs=34.0
Q ss_pred cccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccc
Q 026603 163 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 222 (236)
Q Consensus 163 C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPIC 222 (236)
|+||++.+.+. +.+++|||.|+..||.+|+.. .....||+|
T Consensus 1 C~iC~~~~~~~-----------------~~~~~C~H~fC~~C~~~~~~~--~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP-----------------VILLPCGHSFCRDCLRKWLEN--SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE-----------------EEETTTSEEEEHHHHHHHHHH--TSSSBTTTT
T ss_pred CCcCCccccCC-----------------CEEecCCCcchHHHHHHHHHh--cCCccCCcC
Confidence 78998876664 257899999999999999985 356789998
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.62 E-value=3.2e-08 Score=61.22 Aligned_cols=29 Identities=31% Similarity=0.886 Sum_probs=24.3
Q ss_pred eEEcCCChHhhHHHHHHHHhcCCCCCCCCccc
Q 026603 191 VAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 222 (236)
Q Consensus 191 VavL~CGHvFH~eCLe~Wl~~~~~~~p~CPIC 222 (236)
+.+++|||+||..|++.|+. .....||+|
T Consensus 11 ~~~~~C~H~~c~~C~~~~~~---~~~~~CP~C 39 (39)
T smart00184 11 PVVLPCGHTFCRSCIRKWLK---SGNNTCPIC 39 (39)
T ss_pred cEEecCCChHHHHHHHHHHH---hCcCCCCCC
Confidence 36689999999999999987 244679998
No 20
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.6e-08 Score=99.27 Aligned_cols=54 Identities=30% Similarity=0.640 Sum_probs=44.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
....|.||.+.+...+. ..+..|+|||+||..||..|++ ++.+||+||..+...
T Consensus 290 ~~~~C~IC~e~l~~~~~-------------~~~~rL~C~Hifh~~CL~~W~e----r~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHN-------------ITPKRLPCGHIFHDSCLRSWFE----RQQTCPTCRTVLYDY 343 (543)
T ss_pred cCCeeeeechhhccccc-------------cccceeecccchHHHHHHHHHH----HhCcCCcchhhhhcc
Confidence 36799999999887642 1357799999999999999999 578999999955443
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.59 E-value=4e-08 Score=66.06 Aligned_cols=44 Identities=25% Similarity=0.746 Sum_probs=35.3
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccccc
Q 026603 162 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 224 (236)
Q Consensus 162 ~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~ 224 (236)
.|.||.+.|.... ...+++|||+|+..||+++.. ....||+|++
T Consensus 1 ~C~~C~~~~~~~~---------------~~~l~~CgH~~C~~C~~~~~~----~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEER---------------RPRLTSCGHIFCEKCLKKLKG----KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCC---------------CeEEcccCCHHHHHHHHhhcC----CCCCCcCCCC
Confidence 3899999883221 357899999999999999982 5678999985
No 22
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.8e-08 Score=91.30 Aligned_cols=51 Identities=22% Similarity=0.572 Sum_probs=40.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
....|.||++.-... .-++|||+|+..||..|+.+ ...||+||..+.+.+.
T Consensus 238 a~~kC~LCLe~~~~p------------------SaTpCGHiFCWsCI~~w~~e----k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNP------------------SATPCGHIFCWSCILEWCSE----KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCceEEEecCCCCC------------------CcCcCcchHHHHHHHHHHcc----ccCCCcccccCCCcce
Confidence 456899999875443 23699999999999999984 4679999999887653
No 23
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.50 E-value=5.6e-08 Score=66.08 Aligned_cols=43 Identities=35% Similarity=0.823 Sum_probs=24.1
Q ss_pred cccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCc
Q 026603 163 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCP 220 (236)
Q Consensus 163 C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CP 220 (236)
|+||.+ |.+.+. ...+|+|||+|..+||++|+...+.....||
T Consensus 1 CpIc~e-~~~~~n--------------~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEEN--------------PPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS---------------EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCC--------------CCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899998 755431 3467899999999999999986555567787
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=98.47 E-value=1.3e-07 Score=84.62 Aligned_cols=63 Identities=17% Similarity=0.450 Sum_probs=42.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC--CCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE--DIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~--~~~~p~CPICR~~l~~k~ 230 (236)
.+.+|+||++...++... ++-..-.+.+|+|+||..||.+|.... ......||+||..+....
T Consensus 169 kE~eCgICmE~I~eK~~~---------~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 169 KEKECGICYEVVYSKRLE---------NDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred CCCCCccCcccccccccc---------ccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 457899999887554210 011111345999999999999998632 122457999999886554
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=1.2e-07 Score=90.74 Aligned_cols=49 Identities=24% Similarity=0.680 Sum_probs=41.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
+...|+||.+.|... .+++|||.||..||..|+. ....||+|+..+...
T Consensus 25 ~~l~C~IC~d~~~~P------------------vitpCgH~FCs~CI~~~l~----~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVP------------------VLTSCSHTFCSLCIRRCLS----NQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCc------------------cCCCCCCchhHHHHHHHHh----CCCCCCCCCCccccc
Confidence 567899999988663 3579999999999999998 345899999998764
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=6.3e-08 Score=88.77 Aligned_cols=63 Identities=21% Similarity=0.481 Sum_probs=46.6
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.++..|+||.+.+.+... ..+..+.+-.|.|+|+||+.||..|.--+ ++++||.|+..++.+.
T Consensus 222 l~d~vCaVCg~~~~~s~~--------eegvienty~LsCnHvFHEfCIrGWcivG--KkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVD--------EEGVIENTYKLSCNHVFHEFCIRGWCIVG--KKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCcchhHhhcchheeecc--------hhhhhhhheeeecccchHHHhhhhheeec--CCCCCchHHHHhhHhh
Confidence 467789999988766421 11122335678999999999999997544 6789999998887654
No 27
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2e-07 Score=83.43 Aligned_cols=55 Identities=25% Similarity=0.529 Sum_probs=41.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
.....|-||++.-++. .|..|||.|++-||-+||... .....||+|+..+..+..
T Consensus 45 ~~~FdCNICLd~akdP------------------VvTlCGHLFCWpClyqWl~~~-~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP------------------VVTLCGHLFCWPCLYQWLQTR-PNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCceeeeeeccccCCC------------------EEeecccceehHHHHHHHhhc-CCCeeCCccccccccceE
Confidence 3566899999875443 445799999999999999743 244679999999876653
No 28
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.1e-06 Score=84.05 Aligned_cols=54 Identities=26% Similarity=0.569 Sum_probs=36.8
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
...|.||.+.+.... .+.++-.|||+||..||.+|+.....+ -.||||+-.++.
T Consensus 4 ~A~C~Ic~d~~p~~~--------------~l~~i~~cGhifh~~cl~qwfe~~Ps~-R~cpic~ik~~~ 57 (465)
T KOG0827|consen 4 MAECHICIDGRPNDH--------------ELGPIGTCGHIFHTTCLTQWFEGDPSN-RGCPICQIKLQE 57 (465)
T ss_pred cceeeEeccCCcccc--------------ccccccchhhHHHHHHHHHHHccCCcc-CCCCceeecccc
Confidence 357999954433322 123555799999999999999844332 469999955443
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1e-06 Score=86.21 Aligned_cols=54 Identities=20% Similarity=0.461 Sum_probs=41.2
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC-CCCCCCCcccccCcccCCC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE-DIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~-~~~~p~CPICR~~l~~k~~ 231 (236)
...|+||+++.... ....|||+||..||.+++... ...--.||||+..+..++.
T Consensus 186 ~~~CPICL~~~~~p------------------~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP------------------VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcc------------------cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 67899998663332 334699999999999988644 3455679999999988764
No 30
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.4e-06 Score=79.38 Aligned_cols=52 Identities=23% Similarity=0.521 Sum_probs=41.2
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHH-HHhcCCCCCCC-CcccccCcccCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQ-RTSAEDIRDPP-CPLCLGSLMQVES 231 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~-Wl~~~~~~~p~-CPICR~~l~~k~~ 231 (236)
..+..|.||++..... +-++|||+|+..||.. |+. ..+. ||+||....+++.
T Consensus 213 ~~d~kC~lC~e~~~~p------------------s~t~CgHlFC~~Cl~~~~t~----~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVP------------------SCTPCGHLFCLSCLLISWTK----KKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCc------------------ccccccchhhHHHHHHHHHh----hccccCchhhhhccchhh
Confidence 5678899998764443 4479999999999999 988 3344 9999998877653
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.3e-06 Score=73.12 Aligned_cols=45 Identities=29% Similarity=0.747 Sum_probs=38.7
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccccc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 224 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~ 224 (236)
.+...|.||++.|... .+|+|||.|+..||..++. ....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p------------------~~l~C~H~~c~~C~~~~~~----~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP------------------VLLPCGHNFCRACLTRSWE----GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC------------------ccccccchHhHHHHHHhcC----CCcCCcccCC
Confidence 3677899999998885 5689999999999999988 4478999993
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.07 E-value=1.6e-06 Score=81.79 Aligned_cols=50 Identities=24% Similarity=0.640 Sum_probs=42.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||.+.|... .+.+|||.|+.-||..+|. +++.||.|+.++.+.+
T Consensus 22 ~lLRC~IC~eyf~ip------------------~itpCsHtfCSlCIR~~L~----~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP------------------MITPCSHTFCSLCIRKFLS----YKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHHhHHHHHhcCc------------------eeccccchHHHHHHHHHhc----cCCCCCceecccchhh
Confidence 456799999988774 5568999999999999999 8899999999876544
No 33
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.8e-06 Score=84.63 Aligned_cols=64 Identities=22% Similarity=0.399 Sum_probs=41.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcc--eeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQH--AVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~--vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
....|+||+.++.-...- .+......+. -..+.||.|+||..||++|+.. ++..||+||..+.+
T Consensus 570 ~t~dC~ICMt~I~l~~~~---s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~---ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTG---SDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT---YKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeecc---CcchhhhhhhhccccccchHHHHHHHHHHHHHhh---hcccCCccCCCCCC
Confidence 345799999876533210 0000000000 1345699999999999999972 56789999998865
No 34
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.06 E-value=2.4e-06 Score=63.15 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=39.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
+...|+|+.+.+.+. ++++|||+|-..||++|+.. .+..||+|+..+...+.
T Consensus 3 ~~f~CpIt~~lM~dP------------------Vi~~~G~tyer~~I~~~l~~---~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 3 DEFLCPITGELMRDP------------------VILPSGHTYERSAIERWLEQ---NGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GGGB-TTTSSB-SSE------------------EEETTSEEEEHHHHHHHHCT---TSSB-TTT-SB-SGGGS
T ss_pred cccCCcCcCcHhhCc------------------eeCCcCCEEcHHHHHHHHHc---CCCCCCCCCCcCCcccc
Confidence 566899999988875 56799999999999999983 47899999998877653
No 35
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.96 E-value=8.1e-06 Score=56.65 Aligned_cols=30 Identities=27% Similarity=0.657 Sum_probs=24.5
Q ss_pred EEcCCC-----hHhhHHHHHHHHhcCCCCCCCCcccc
Q 026603 192 AVLVCG-----HVYHADCLEQRTSAEDIRDPPCPLCL 223 (236)
Q Consensus 192 avL~CG-----HvFH~eCLe~Wl~~~~~~~p~CPICR 223 (236)
.+.||. |.+|..||++|+.+. .+..||||.
T Consensus 15 l~~PC~C~G~~~~vH~~Cl~~W~~~~--~~~~C~iC~ 49 (49)
T smart00744 15 LVSPCRCKGSLKYVHQECLERWINES--GNKTCEICK 49 (49)
T ss_pred eEeccccCCchhHHHHHHHHHHHHHc--CCCcCCCCC
Confidence 457885 999999999999754 445899995
No 36
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.87 E-value=6.6e-06 Score=79.77 Aligned_cols=50 Identities=22% Similarity=0.613 Sum_probs=39.6
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
.+.-+|+||++-+...-. -+....|.|.||..||..|.. .+||+||.-..
T Consensus 173 tELPTCpVCLERMD~s~~--------------gi~t~~c~Hsfh~~cl~~w~~------~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTT--------------GILTILCNHSFHCSCLMKWWD------SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCcccc--------------ceeeeecccccchHHHhhccc------CcChhhhhhcC
Confidence 478899999988766421 234457999999999999976 68999998765
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.86 E-value=1e-05 Score=75.39 Aligned_cols=57 Identities=23% Similarity=0.427 Sum_probs=39.1
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
++...|+||........ ++. .-+-.|||.||..||+..+.. ....||+|+..+....
T Consensus 1 md~~~CP~Ck~~~y~np------------~~k-l~i~~CGH~~C~sCv~~l~~~---~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 1 MDDQGCPRCKTTKYRNP------------SLK-LMVNVCGHTLCESCVDLLFVR---GSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCCcCCCCCccCc------------ccc-cccCCCCCcccHHHHHHHhcC---CCCCCCCCCCccchhh
Confidence 35678999986422211 111 122279999999999997753 4468999999887654
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.74 E-value=3.4e-06 Score=62.37 Aligned_cols=57 Identities=25% Similarity=0.473 Sum_probs=25.5
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEE--cCCChHhhHHHHHHHHhcCCC----CC---CCCcccccCcccC
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAV--LVCGHVYHADCLEQRTSAEDI----RD---PPCPLCLGSLMQV 229 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVav--L~CGHvFH~eCLe~Wl~~~~~----~~---p~CPICR~~l~~k 229 (236)
..|+||...+.+.. +...+.- -.|+..||..||.+|+..... .. ..||.|+.++..+
T Consensus 3 ~~C~IC~~~~~~~~------------~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 3 LECGICYSYRLDDG------------EIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp -S-SSS--SS-TT-----------------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCcCCcEecCCC------------CcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 47999998755221 1111111 379999999999999853211 22 3699999987643
No 39
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.69 E-value=4e-05 Score=78.66 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=41.2
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
+...|+||+..+.+.- +..-..|+|.||++||+.|.. .-.+||+||.+|....+
T Consensus 122 ~~~~CP~Ci~s~~DqL---------------~~~~k~c~H~FC~~Ci~sWsR----~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQL---------------EESEKHTAHYFCEECVGSWSR----CAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHh---------------hccccccccccHHHHhhhhhh----hcccCchhhhhhheeee
Confidence 4456777766655542 345568999999999999998 44799999999987654
No 40
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.68 E-value=1.8e-05 Score=73.62 Aligned_cols=49 Identities=22% Similarity=0.622 Sum_probs=40.5
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
...|-||-+.|... ...+|||.|+.-||...|. .++.||+||.+.....
T Consensus 25 ~lrC~IC~~~i~ip------------------~~TtCgHtFCslCIR~hL~----~qp~CP~Cr~~~~esr 73 (391)
T COG5432 25 MLRCRICDCRISIP------------------CETTCGHTFCSLCIRRHLG----TQPFCPVCREDPCESR 73 (391)
T ss_pred HHHhhhhhheeecc------------------eecccccchhHHHHHHHhc----CCCCCccccccHHhhh
Confidence 34699998877665 3468999999999999999 7799999998875544
No 41
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.39 E-value=8e-05 Score=71.69 Aligned_cols=53 Identities=25% Similarity=0.658 Sum_probs=40.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
....|++|.+.+..++. -.--|+|.|+||+.|+..++.+. .+-+||-||+...
T Consensus 364 ~~L~Cg~CGe~~Glk~e--------------~LqALpCsHIfH~rCl~e~L~~n--~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNE--------------RLQALPCSHIFHLRCLQEILENN--GTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcc--------------cccccchhHHHHHHHHHHHHHhC--CCCCCccHHHHHh
Confidence 45689999999877642 12348999999999999999643 5678999995443
No 42
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=7e-05 Score=76.18 Aligned_cols=52 Identities=23% Similarity=0.678 Sum_probs=41.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
....|++|-.-.++ +++..|||+||.+|++..+.. +.-.||.|...|+.-+.
T Consensus 642 ~~LkCs~Cn~R~Kd------------------~vI~kC~H~FC~~Cvq~r~et---RqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD------------------AVITKCGHVFCEECVQTRYET---RQRKCPKCNAAFGANDV 693 (698)
T ss_pred hceeCCCccCchhh------------------HHHHhcchHHHHHHHHHHHHH---hcCCCCCCCCCCCcccc
Confidence 34689999754444 255699999999999999872 56789999999988763
No 43
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=6e-05 Score=72.64 Aligned_cols=56 Identities=25% Similarity=0.642 Sum_probs=43.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
+..+|+||++.++..- +. .+..|.|||.|...||+.|+. .+....||.|..+.-++
T Consensus 3 ~g~tcpiclds~~~~g------------~h-r~vsl~cghlFgs~cie~wl~--k~~~~~cp~c~~katkr 58 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAG------------NH-RIVSLQCGHLFGSQCIEKWLG--KKTKMQCPLCSGKATKR 58 (463)
T ss_pred ccccCceeeeeeeecC------------ce-EEeeecccccccHHHHHHHHh--hhhhhhCcccCChhHHH
Confidence 4568999998876642 22 346689999999999999996 34778999998775444
No 44
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.19 E-value=7.2e-05 Score=57.07 Aligned_cols=32 Identities=34% Similarity=0.789 Sum_probs=26.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHH
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLE 206 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe 206 (236)
+...|.+|.+.|..+ ++++.||||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~~----------------~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNS----------------VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCc----------------eEEEeCCCeEEeccccc
Confidence 355799999988774 56889999999999985
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00024 Score=67.28 Aligned_cols=63 Identities=22% Similarity=0.582 Sum_probs=43.4
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHhcC---CCCCCCCcccccCcccCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAE---DIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL-~CGHvFH~eCLe~Wl~~~---~~~~p~CPICR~~l~~k~~ 231 (236)
....+|+||++...++. .. +...++| +|.|.|+..||..|-... ......||+||.....+..
T Consensus 159 s~~k~CGICme~i~ek~----------~~-~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 159 SSEKECGICMETINEKA----------AS-ERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccccceehhhhccccc----------hh-hhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 35679999998877653 01 1123444 699999999999997422 1224789999988765543
No 46
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.15 E-value=0.00024 Score=74.47 Aligned_cols=57 Identities=23% Similarity=0.494 Sum_probs=40.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
....|+||.-.|..-+- + ++--+-..|.|-||+.||-.|+... ....||+||.++.-
T Consensus 1468 G~eECaICYsvL~~vdr-----~------lPskrC~TCknKFH~~CLyKWf~Ss--~~s~CPlCRseitf 1524 (1525)
T COG5219 1468 GHEECAICYSVLDMVDR-----S------LPSKRCATCKNKFHTRCLYKWFASS--ARSNCPLCRSEITF 1524 (1525)
T ss_pred CcchhhHHHHHHHHHhc-----c------CCccccchhhhhhhHHHHHHHHHhc--CCCCCCcccccccc
Confidence 45689999888762210 0 1111334799999999999999855 66789999988753
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00024 Score=67.44 Aligned_cols=51 Identities=25% Similarity=0.644 Sum_probs=42.0
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
...|.||+..|+..- .+--|+|-|+.+||..-+.. .+..||.||+.+.-+.
T Consensus 43 ~v~c~icl~llk~tm-----------------ttkeClhrfc~~ci~~a~r~---gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 43 QVICPICLSLLKKTM-----------------TTKECLHRFCFDCIWKALRS---GNNECPTCRKKLVSKR 93 (381)
T ss_pred hhccHHHHHHHHhhc-----------------ccHHHHHHHHHHHHHHHHHh---cCCCCchHHhhccccc
Confidence 568999999988742 34589999999999998874 5679999999887664
No 48
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.87 E-value=0.00051 Score=49.19 Aligned_cols=45 Identities=22% Similarity=0.489 Sum_probs=30.0
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPL 221 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPI 221 (236)
.....|+|.+++|+++ |.-..|||+|-.+.|.+|+.. .....||+
T Consensus 9 ~~~~~CPiT~~~~~~P-----------------V~s~~C~H~fek~aI~~~i~~--~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP-----------------VKSKKCGHTFEKEAILQYIQR--NGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE-----------------EEESSS--EEEHHHHHHHCTT--TS-EE-SC
T ss_pred EeccCCCCcCChhhCC-----------------cCcCCCCCeecHHHHHHHHHh--cCCCCCCC
Confidence 3567899999998874 455689999999999999942 36678998
No 49
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00072 Score=64.05 Aligned_cols=47 Identities=26% Similarity=0.573 Sum_probs=37.2
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHv-FH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
...|.||+...++ +.+|||-|. .+..|.+...- +...|||||..+..
T Consensus 290 gkeCVIClse~rd------------------t~vLPCRHLCLCs~Ca~~Lr~----q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRD------------------TVVLPCRHLCLCSGCAKSLRY----QTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcc------------------eEEecchhhehhHhHHHHHHH----hhcCCCccccchHh
Confidence 5689999865333 588999995 89999998864 44679999998754
No 50
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00079 Score=62.18 Aligned_cols=62 Identities=26% Similarity=0.527 Sum_probs=44.8
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCCCCC
Q 026603 155 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESSGV 234 (236)
Q Consensus 155 Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~~~~ 234 (236)
+--....+|++|.++=+.+ -...+|||+|+.-||..-..-. ..++||.|.....+-++++.
T Consensus 234 s~~t~~~~C~~Cg~~PtiP-----------------~~~~~C~HiyCY~Ci~ts~~~~--asf~Cp~Cg~~~~~lq~sgv 294 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIP-----------------HVIGKCGHIYCYYCIATSRLWD--ASFTCPLCGENVEPLQASGV 294 (298)
T ss_pred ccccCCceeeccCCCCCCC-----------------eeeccccceeehhhhhhhhcch--hhcccCccCCCCcchhhccC
Confidence 3345788999998763332 2446899999999999876622 34899999998886666554
Q ss_pred C
Q 026603 235 Q 235 (236)
Q Consensus 235 q 235 (236)
+
T Consensus 295 ~ 295 (298)
T KOG2879|consen 295 K 295 (298)
T ss_pred C
Confidence 3
No 51
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00085 Score=62.64 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
..-...|.||+..--. + ..|+|+|.|+..||+.-... ....|++||.+++...
T Consensus 4 ~~~~~eC~IC~nt~n~-----------------P-v~l~C~HkFCyiCiKGsy~n---dk~~CavCR~pids~i 56 (324)
T KOG0824|consen 4 RTKKKECLICYNTGNC-----------------P-VNLYCFHKFCYICIKGSYKN---DKKTCAVCRFPIDSTI 56 (324)
T ss_pred cccCCcceeeeccCCc-----------------C-ccccccchhhhhhhcchhhc---CCCCCceecCCCCcch
Confidence 3456689999754222 1 45899999999999987651 2356999999987643
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00071 Score=65.16 Aligned_cols=48 Identities=29% Similarity=0.813 Sum_probs=39.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
....|.||...|... ++++|||.|+..||++-+. ....||+||..+..
T Consensus 83 sef~c~vc~~~l~~p------------------v~tpcghs~c~~Cl~r~ld----~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALYPP------------------VVTPCGHSFCLECLDRSLD----QETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcCCC------------------ccccccccccHHHHHHHhc----cCCCCccccccccc
Confidence 567899997665553 4569999999999999776 66899999998864
No 53
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.52 E-value=0.0011 Score=59.15 Aligned_cols=44 Identities=27% Similarity=0.683 Sum_probs=36.3
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCc
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 226 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l 226 (236)
..|+||.++|+.+ .|..|||.|+..|...-.. ..+.|-+|-+..
T Consensus 197 F~C~iCKkdy~sp------------------vvt~CGH~FC~~Cai~~y~----kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESP------------------VVTECGHSFCSLCAIRKYQ----KGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccch------------------hhhhcchhHHHHHHHHHhc----cCCcceecchhh
Confidence 4899999998875 3458999999999998887 457999997653
No 54
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.00081 Score=48.70 Aligned_cols=46 Identities=22% Similarity=0.540 Sum_probs=31.8
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHH-HHhcCCCCCCCCcccccCccc
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQ-RTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHv-FH~eCLe~-Wl~~~~~~~p~CPICR~~l~~ 228 (236)
+.|.||.+.--+. .+..|||+ .+.+|-.+ |.. .+..|||||.++.-
T Consensus 8 dECTICye~pvds------------------VlYtCGHMCmCy~Cg~rl~~~----~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDS------------------VLYTCGHMCMCYACGLRLKKA----LHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchH------------------HHHHcchHHhHHHHHHHHHHc----cCCcCcchhhHHHH
Confidence 6799997542221 23489996 68888554 544 56799999988643
No 55
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.37 E-value=0.00079 Score=49.85 Aligned_cols=49 Identities=22% Similarity=0.645 Sum_probs=25.0
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
...|.+|.+.|++. |-+..|.|+|+..|+...+. ..||+|..+.-..+.
T Consensus 7 lLrCs~C~~~l~~p-----------------v~l~~CeH~fCs~Ci~~~~~------~~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 7 LLRCSICFDILKEP-----------------VCLGGCEHIFCSSCIRDCIG------SECPVCHTPAWIQDI 55 (65)
T ss_dssp TTS-SSS-S--SS------------------B---SSS--B-TTTGGGGTT------TB-SSS--B-S-SS-
T ss_pred hcCCcHHHHHhcCC-----------------ceeccCccHHHHHHhHHhcC------CCCCCcCChHHHHHH
Confidence 45699998887774 34568999999999988665 349999988766654
No 56
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0037 Score=56.77 Aligned_cols=53 Identities=26% Similarity=0.605 Sum_probs=39.9
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc----CCCCCCCCcccccCcccC
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA----EDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~----~~~~~p~CPICR~~l~~k 229 (236)
-.|.+|.-.|.+++. ..|.|=|+||..||++|-.. ..-....||-|..++-+-
T Consensus 51 pNC~LC~t~La~gdt----------------~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDT----------------TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCceeCCccccCcc----------------eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 369999888877652 34789999999999999642 222457899999987653
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.17 E-value=0.0017 Score=62.15 Aligned_cols=51 Identities=35% Similarity=0.769 Sum_probs=41.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
++..|+||...+.+.. -...|||.|++.|+..|+. .++.||.|+..+...+
T Consensus 20 ~~l~C~~C~~vl~~p~-----------------~~~~cgh~fC~~C~~~~~~----~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPV-----------------QTTTCGHRFCAGCLLESLS----NHQKCPVCRQELTQAE 70 (391)
T ss_pred ccccCccccccccCCC-----------------CCCCCCCcccccccchhhc----cCcCCcccccccchhh
Confidence 5678999998887752 1158999999999999998 4789999988765544
No 58
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.0036 Score=57.38 Aligned_cols=57 Identities=19% Similarity=0.373 Sum_probs=45.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESSG 233 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~~~ 233 (236)
....|+||.+.|++.-+ .+++-+|||||..+|.+..+. .+..||||-.++..++.-+
T Consensus 220 ~ryiCpvtrd~LtNt~~--------------ca~Lr~sg~Vv~~ecvEklir----~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTP--------------CAVLRPSGHVVTKECVEKLIR----KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccc--------------eEEeccCCcEeeHHHHHHhcc----ccccccCCCCcCcccceEe
Confidence 45678888888776532 345559999999999999998 7899999999988777533
No 59
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.09 E-value=0.0024 Score=59.95 Aligned_cols=59 Identities=24% Similarity=0.469 Sum_probs=43.3
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc-------------------CCCCCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA-------------------EDIRDPP 218 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~-------------------~~~~~p~ 218 (236)
.-...|.||+--|.+++ .+.+.+|-|.||-.||.++|.. ++.....
T Consensus 113 ~p~gqCvICLygfa~~~---------------~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eav 177 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSP---------------AFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAV 177 (368)
T ss_pred CCCCceEEEEEeecCCC---------------ceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 34568999988888775 2456799999999999887631 1123356
Q ss_pred CcccccCcccCCC
Q 026603 219 CPLCLGSLMQVES 231 (236)
Q Consensus 219 CPICR~~l~~k~~ 231 (236)
|||||..+.....
T Consensus 178 cpVcre~i~~e~~ 190 (368)
T KOG4445|consen 178 CPVCRERIKIEEN 190 (368)
T ss_pred hhHhhhhcccccc
Confidence 9999998877654
No 60
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.08 E-value=0.0032 Score=58.13 Aligned_cols=47 Identities=32% Similarity=0.740 Sum_probs=38.0
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccccc
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 224 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~ 224 (236)
...|+||.+.+..... .+.+++|||..|..|++.+.. ...+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~--------------~~~~~~CgH~~h~~cf~e~~~----~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFE--------------DAGVLKCGHYMHSRCFEEMIC----EGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccc--------------cCCccCcccchHHHHHHHHhc----cCCCCCcccc
Confidence 3458899888776532 457799999999999999987 3389999988
No 61
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.0033 Score=65.46 Aligned_cols=34 Identities=35% Similarity=0.742 Sum_probs=28.3
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHH
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRT 209 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl 209 (236)
...|.+|..+|-.+. .-+.+|||.||++||++-+
T Consensus 817 ~d~C~~C~~~ll~~p----------------F~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKP----------------FYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ccchHHhcchhhcCc----------------ceeeeccchHHHHHHHHHH
Confidence 457999999887763 3567999999999999875
No 62
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.94 E-value=0.0031 Score=61.26 Aligned_cols=50 Identities=26% Similarity=0.646 Sum_probs=37.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
--+.|-||-+. ++ .|.+-+|||..+..||..|-... ....||.||-++.-
T Consensus 368 TFeLCKICaen--dK----------------dvkIEPCGHLlCt~CLa~WQ~sd--~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 368 TFELCKICAEN--DK----------------DVKIEPCGHLLCTSCLAAWQDSD--EGQTCPFCRCEIKG 417 (563)
T ss_pred hHHHHHHhhcc--CC----------------CcccccccchHHHHHHHhhcccC--CCCCCCceeeEecc
Confidence 34579999653 22 35667999999999999997533 24689999988743
No 63
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.86 E-value=0.006 Score=55.06 Aligned_cols=55 Identities=20% Similarity=0.481 Sum_probs=42.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
.....|+|....|.... ..|++.+|||||-..+|++.- .+..||+|-.+|...+.
T Consensus 111 ~~~~~CPvt~~~~~~~~--------------~fv~l~~cG~V~s~~alke~k-----~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKH--------------KFVYLRPCGCVFSEKALKELK-----KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CceeECCCCCcccCCce--------------eEEEEcCCCCEeeHHHHHhhc-----ccccccccCCccccCCE
Confidence 35678999998885432 256778999999999999983 23569999999987654
No 64
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.69 E-value=0.009 Score=59.85 Aligned_cols=55 Identities=18% Similarity=0.449 Sum_probs=41.2
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh-cCCCCCCCCcccccCcccC
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS-AEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~-~~~~~~p~CPICR~~l~~k 229 (236)
......|++|.++-++- .+..|.|+||.-||.++.. ..+..+.+||+|-..+...
T Consensus 533 nk~~~~C~lc~d~aed~------------------i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDY------------------IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhh------------------HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 34577899998775442 3358999999999999874 2344668999998877654
No 65
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.55 E-value=0.0095 Score=57.10 Aligned_cols=54 Identities=26% Similarity=0.454 Sum_probs=40.2
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 156 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 156 p~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
.+.+.+.|.||-+.++. ++++||+|-.+--|..+.-..- ....||+||.+++.+
T Consensus 57 tDEen~~C~ICA~~~TY------------------s~~~PC~H~~CH~Ca~RlRALY--~~K~C~~CrTE~e~V 110 (493)
T COG5236 57 TDEENMNCQICAGSTTY------------------SARYPCGHQICHACAVRLRALY--MQKGCPLCRTETEAV 110 (493)
T ss_pred cccccceeEEecCCceE------------------EEeccCCchHHHHHHHHHHHHH--hccCCCccccccceE
Confidence 35678999999766554 4789999999999987653211 335799999998654
No 66
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.54 E-value=0.014 Score=50.23 Aligned_cols=53 Identities=21% Similarity=0.565 Sum_probs=37.2
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC--h---HhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG--H---VYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CG--H---vFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+.....|=||.+.-. .+ .-||. . .-|.+||++|+... +...|++|..+|..+.
T Consensus 5 s~~~~~CRIC~~~~~---~~----------------~~PC~CkGs~k~VH~sCL~rWi~~s--~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 5 SLMDKCCWICKDEYD---VV----------------TNYCNCKNENKIVHKECLEEWINTS--KNKSCKICNGPYNIKK 62 (162)
T ss_pred CCCCCeeEecCCCCC---Cc----------------cCCcccCCCchHHHHHHHHHHHhcC--CCCcccccCCeEEEEE
Confidence 446678999975521 11 12454 3 56999999999854 6788999999986653
No 67
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.34 E-value=0.0054 Score=57.80 Aligned_cols=51 Identities=20% Similarity=0.500 Sum_probs=41.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
...+|.+|..+|-+.. .+.-|=|.||..||..+|.+ ...||.|...+....
T Consensus 14 ~~itC~LC~GYliDAT-----------------TI~eCLHTFCkSCivk~l~~----~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDAT-----------------TITECLHTFCKSCIVKYLEE----SKYCPTCDIVIHKTH 64 (331)
T ss_pred cceehhhccceeecch-----------------hHHHHHHHHHHHHHHHHHHH----hccCCccceeccCcc
Confidence 6789999999887742 44589999999999999993 578999988775543
No 68
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.0062 Score=56.84 Aligned_cols=46 Identities=26% Similarity=0.589 Sum_probs=37.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 226 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l 226 (236)
....|.||.++|..+ .|..|||.|+..|...-+. ....|+||-+..
T Consensus 240 ~Pf~c~icr~~f~~p------------------Vvt~c~h~fc~~ca~~~~q----k~~~c~vC~~~t 285 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRP------------------VVTKCGHYFCEVCALKPYQ----KGEKCYVCSQQT 285 (313)
T ss_pred CCccccccccccccc------------------hhhcCCceeehhhhccccc----cCCcceeccccc
Confidence 345699999998775 4458999999999988887 557899997654
No 69
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.91 E-value=0.017 Score=63.50 Aligned_cols=38 Identities=21% Similarity=0.549 Sum_probs=26.9
Q ss_pred eeEEcCCChHhhHHHHHHHHhc------CCCCCCCCcccccCcc
Q 026603 190 AVAVLVCGHVYHADCLEQRTSA------EDIRDPPCPLCLGSLM 227 (236)
Q Consensus 190 vVavL~CGHvFH~eCLe~Wl~~------~~~~~p~CPICR~~l~ 227 (236)
+...|.|+|+||..|....|+. +.-.-..||||...+.
T Consensus 3501 P~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3501 PAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3456899999999998765541 1112267999998764
No 70
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.023 Score=51.33 Aligned_cols=51 Identities=25% Similarity=0.567 Sum_probs=40.3
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCc
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 226 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l 226 (236)
..|.||-++|...+ +....++|.|||.|+..|+...+.. ....||.||...
T Consensus 4 ~~c~~c~~~~s~~~------------~~~~p~~l~c~h~~c~~c~~~l~~~---~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSED------------GDHIPRVLKCGHTICQNCASKLLGN---SRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccC------------cccCCcccccCceehHhHHHHHhcC---ceeeccCCCCcc
Confidence 46999999887653 2235588999999999999988762 456799999995
No 71
>PHA02862 5L protein; Provisional
Probab=94.48 E-value=0.034 Score=47.37 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=24.5
Q ss_pred HhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 199 VYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 199 vFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.-|.+||.+|+.. .++..|++|+.+|..+.
T Consensus 27 ~VHq~CL~~WIn~--S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 27 VVHIKCMQLWINY--SKKKECNLCKTKYNIKK 56 (156)
T ss_pred hHHHHHHHHHHhc--CCCcCccCCCCeEEEEE
Confidence 5799999999964 36778999999986543
No 72
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.30 E-value=0.014 Score=42.01 Aligned_cols=33 Identities=27% Similarity=0.652 Sum_probs=26.8
Q ss_pred EEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 192 AVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 192 avL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+++|||+-...|.+-+-- ..||+|-..++..+
T Consensus 21 ~~~pCgH~I~~~~f~~~rY------ngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPGERY------NGCPFCGTPFEFDD 53 (55)
T ss_pred ccccccceeeccccChhhc------cCCCCCCCcccCCC
Confidence 6789999999998776633 57999999987654
No 73
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.29 E-value=0.029 Score=52.99 Aligned_cols=44 Identities=30% Similarity=0.728 Sum_probs=36.0
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccccc
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 224 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~ 224 (236)
..|++|..+|.+.. ..--|||.|+.+||+.-|.. .++.||.|-.
T Consensus 275 LkCplc~~Llrnp~-----------------kT~cC~~~fc~eci~~al~d---sDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPM-----------------KTPCCGHTFCDECIGTALLD---SDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcc-----------------cCccccchHHHHHHhhhhhh---ccccCCCccc
Confidence 67999999888752 44469999999999998863 6789999954
No 74
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=0.027 Score=58.81 Aligned_cols=43 Identities=40% Similarity=0.911 Sum_probs=32.6
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCc
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 226 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l 226 (236)
...|.+|.-.|.-+ .|. ..|||.||.+|++ . ....||-|+.++
T Consensus 840 ~skCs~C~~~LdlP----------------~Vh-F~CgHsyHqhC~e---~----~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP----------------FVH-FLCGHSYHQHCLE---D----KEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccc----------------eee-eecccHHHHHhhc---c----CcccCCccchhh
Confidence 46899997666553 333 5799999999999 2 456899999854
No 75
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.00 E-value=0.047 Score=45.72 Aligned_cols=36 Identities=25% Similarity=0.511 Sum_probs=26.4
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC------hHhhHHHHHHHHh
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG------HVYHADCLEQRTS 210 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CG------HvFH~eCLe~Wl~ 210 (236)
...|.||.+.+.+.. .+|++ +|| |+||++|+++|..
T Consensus 26 ~~EC~IC~~~I~~~~--------------GvV~v-t~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNND--------------GVVYV-TDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCC--------------CEEEE-ecCCeehHHHHHHHHHHHHHHh
Confidence 567999998887711 14454 454 8999999999953
No 76
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.0084 Score=56.16 Aligned_cols=44 Identities=30% Similarity=0.757 Sum_probs=31.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCCh-HhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGH-VYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGH-vFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
....|.||++.-.+ -..|.||| |-+..|-..+- .|||||+.+..
T Consensus 299 ~~~LC~ICmDaP~D------------------CvfLeCGHmVtCt~CGkrm~--------eCPICRqyi~r 343 (350)
T KOG4275|consen 299 TRRLCAICMDAPRD------------------CVFLECGHMVTCTKCGKRMN--------ECPICRQYIVR 343 (350)
T ss_pred HHHHHHHHhcCCcc------------------eEEeecCcEEeehhhccccc--------cCchHHHHHHH
Confidence 36789999865333 25689999 45777766553 69999987644
No 77
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.0059 Score=58.98 Aligned_cols=54 Identities=24% Similarity=0.488 Sum_probs=41.8
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
.....|.||.+.|++.= ..+..+.|||.||.+||.+|+.. .-.||.|+.+++..
T Consensus 194 slv~sl~I~~~slK~~y--------------~k~~~~~~g~~~~~~kL~k~L~~----~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 194 SLVGSLSICFESLKQNY--------------DKISAIVCGHIYHHGKLSKWLAT----KRKLPSCRRELPKN 247 (465)
T ss_pred HHHhhhHhhHHHHHHHH--------------HHHHHHhhcccchhhHHHHHHHH----HHHhHHHHhhhhhh
Confidence 35668999999998751 12344689999999999999983 45799999988654
No 78
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.035 Score=52.92 Aligned_cols=45 Identities=24% Similarity=0.575 Sum_probs=31.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
....|.||.+...+ +..++|||+-+ |..-... .+.||+||..+..
T Consensus 304 ~p~lcVVcl~e~~~------------------~~fvpcGh~cc--ct~cs~~-----l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS------------------AVFVPCGHVCC--CTLCSKH-----LPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccc------------------eeeecCCcEEE--chHHHhh-----CCCCchhHHHHHH
Confidence 45679999765333 36689999965 6655543 3679999987653
No 79
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.062 Score=51.78 Aligned_cols=61 Identities=20% Similarity=0.390 Sum_probs=44.9
Q ss_pred CCCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCCC
Q 026603 153 AASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 232 (236)
Q Consensus 153 s~Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~~ 232 (236)
..-|+.++..|+||... . . .+...||+|--+..||.+-+. +...|-.|+..+..+..+
T Consensus 415 ~~lp~sEd~lCpICyA~----p-i-------------~Avf~PC~H~SC~~CI~qHlm----N~k~CFfCktTv~~~~ld 472 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAG----P-I-------------NAVFAPCSHRSCYGCITQHLM----NCKRCFFCKTTVIDVILD 472 (489)
T ss_pred CCCCCcccccCcceecc----c-c-------------hhhccCCCCchHHHHHHHHHh----cCCeeeEecceeeehhcc
Confidence 33466788999999532 1 0 123459999999999999998 667899999988765555
Q ss_pred CCC
Q 026603 233 GVQ 235 (236)
Q Consensus 233 ~~q 235 (236)
++.
T Consensus 473 ~~~ 475 (489)
T KOG4692|consen 473 KEE 475 (489)
T ss_pred ccc
Confidence 543
No 80
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.88 E-value=0.029 Score=38.48 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=16.3
Q ss_pred HhhHHHHHHHHhcCCCCCCCCccc
Q 026603 199 VYHADCLEQRTSAEDIRDPPCPLC 222 (236)
Q Consensus 199 vFH~eCLe~Wl~~~~~~~p~CPIC 222 (236)
.-|..||++|+... .+..|++|
T Consensus 26 ~vH~~CL~~W~~~~--~~~~C~~C 47 (47)
T PF12906_consen 26 YVHRSCLERWIRES--GNRKCEIC 47 (47)
T ss_dssp SEECCHHHHHHHHH--T-SB-TTT
T ss_pred hhHHHHHHHHHHhc--CCCcCCCC
Confidence 56999999999753 55679998
No 81
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.86 E-value=0.079 Score=45.61 Aligned_cols=12 Identities=42% Similarity=1.118 Sum_probs=10.0
Q ss_pred CCCCcccccCcc
Q 026603 216 DPPCPLCLGSLM 227 (236)
Q Consensus 216 ~p~CPICR~~l~ 227 (236)
+..||+||+++.
T Consensus 80 ~L~CPLCRG~V~ 91 (162)
T PF07800_consen 80 ELACPLCRGEVK 91 (162)
T ss_pred cccCccccCcee
Confidence 578999999874
No 82
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=0.12 Score=50.50 Aligned_cols=50 Identities=22% Similarity=0.417 Sum_probs=35.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh----cCCCCCCCCcccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS----AEDIRDPPCPLCL 223 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~----~~~~~~p~CPICR 223 (236)
....|.||.+...... -...|+|+|||+..|+..++. +.......||-|.
T Consensus 183 slf~C~ICf~e~~G~~---------------c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQH---------------CFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hcccceeeehhhcCcc---------------eeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 4568999987654421 346789999999999999974 2333446677553
No 83
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.22 E-value=0.09 Score=55.09 Aligned_cols=54 Identities=24% Similarity=0.572 Sum_probs=40.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCC---CCCCCcccccCc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDI---RDPPCPLCLGSL 226 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~---~~p~CPICR~~l 226 (236)
....|.||.+.+....+ +.+--.|=||||..||..|-...++ ..-.||-|....
T Consensus 190 ~~yeCmIC~e~I~~t~~--------------~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAP--------------VWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCC--------------ceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 56899999998877642 3344568999999999999754333 336799998543
No 84
>PHA03096 p28-like protein; Provisional
Probab=92.09 E-value=0.12 Score=47.98 Aligned_cols=55 Identities=16% Similarity=0.337 Sum_probs=34.9
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHhcCCC--CCCCCcccccCc
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAEDI--RDPPCPLCLGSL 226 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL-~CGHvFH~eCLe~Wl~~~~~--~~p~CPICR~~l 226 (236)
..|+||++....+.. . +. ...+| .|-|+|+..|+..|...... .-+.||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~-~---------~~-~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYI-I---------KK-YYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhcc-c---------cc-cccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 689999988776531 0 00 12333 89999999999999754321 224555555544
No 85
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.17 E-value=0.17 Score=35.38 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=22.7
Q ss_pred cccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 163 CGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 163 C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
|++|.+.+...+. .+.-=+||+..+..|....+.. .+..||-||.+|.
T Consensus 1 cp~C~e~~d~~d~--------------~~~PC~Cgf~IC~~C~~~i~~~---~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDK--------------DFYPCECGFQICRFCYHDILEN---EGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCT--------------T--SSTTS----HHHHHHHTTS---S-SB-TTT--B--
T ss_pred CCCcccccccCCC--------------ccccCcCCCcHHHHHHHHHHhc---cCCCCCCCCCCCC
Confidence 7889888844431 1122378999999998888762 4678999999863
No 86
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=0.14 Score=45.31 Aligned_cols=38 Identities=24% Similarity=0.513 Sum_probs=28.5
Q ss_pred EcCCChHhhHHHHHHHHhcC----CCCC---CCCcccccCcccCC
Q 026603 193 VLVCGHVYHADCLEQRTSAE----DIRD---PPCPLCLGSLMQVE 230 (236)
Q Consensus 193 vL~CGHvFH~eCLe~Wl~~~----~~~~---p~CPICR~~l~~k~ 230 (236)
-..||--||.-||..||... +..+ ..||.|..++-.|-
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 35799999999999998522 1122 57999999886654
No 87
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.95 E-value=0.086 Score=54.10 Aligned_cols=48 Identities=29% Similarity=0.725 Sum_probs=36.1
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
..|.||.+ .+. ..+..|||.|+.+|+...+... .+..||+|+..+..+
T Consensus 455 ~~c~ic~~--~~~-----------------~~it~c~h~~c~~c~~~~i~~~--~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD--LDS-----------------FFITRCGHDFCVECLKKSIQQS--ENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc--ccc-----------------ceeecccchHHHHHHHhccccc--cCCCCcHHHHHHHHH
Confidence 78999987 121 2445899999999999988754 334799999877554
No 88
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.65 E-value=0.21 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=20.1
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcc
Q 026603 194 LVCGHVYHADCLEQRTSAEDIRDPPCPL 221 (236)
Q Consensus 194 L~CGHvFH~eCLe~Wl~~~~~~~p~CPI 221 (236)
+.||||.|..|...|+..+ -.||.
T Consensus 1046 g~C~Hv~H~sc~~eWf~~g----d~Cps 1069 (1081)
T KOG0309|consen 1046 GTCGHVGHTSCMMEWFRTG----DVCPS 1069 (1081)
T ss_pred ccccccccHHHHHHHHhcC----CcCCC
Confidence 5799999999999999944 37873
No 89
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=0.13 Score=44.95 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=25.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhH
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHA 202 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~ 202 (236)
+...|.||+++|...+ .++.|||=-+||.
T Consensus 176 dkGECvICLEdL~~Gd---------------tIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGD---------------TIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCC---------------ceeccceEEEeec
Confidence 6778999999999886 5788999999985
No 90
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=0.29 Score=46.61 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=36.6
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCc
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 226 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l 226 (236)
+.+...|+||++.-.++. ++-.-|-|||..|+.+++. +...||+=..+.
T Consensus 297 ~~~~~~CpvClk~r~Npt-----------------vl~vSGyVfCY~Ci~~Yv~----~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPT-----------------VLEVSGYVFCYPCIFSYVV----NYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCCc-----------------eEEecceEEeHHHHHHHHH----hcCCCCccCCcc
Confidence 347789999987644432 3345799999999999998 567899855443
No 91
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.92 E-value=0.65 Score=44.80 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=38.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
+++.|++|.+++.-.+- -.---+||-..+..|-...-. .-+..||-||..|....+
T Consensus 13 eed~cplcie~mditdk--------------nf~pc~cgy~ic~fc~~~irq---~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDYCPLCIEPMDITDK--------------NFFPCPCGYQICQFCYNNIRQ---NLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccccCcccccccccccC--------------CcccCCcccHHHHHHHHHHHh---hccCCChHhhhhccccce
Confidence 34459999998764431 012247999888888666544 255789999999876654
No 92
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.77 E-value=0.75 Score=43.09 Aligned_cols=34 Identities=26% Similarity=0.593 Sum_probs=27.8
Q ss_pred EEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 192 AVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 192 avL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
.+-+|||-.+..|.+..+.. +...||-|+..+-.
T Consensus 19 ~in~C~H~lCEsCvd~iF~~---g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 19 MINECGHRLCESCVDRIFSL---GPAQCPECMVILRK 52 (300)
T ss_pred eeccccchHHHHHHHHHHhc---CCCCCCcccchhhh
Confidence 33499999999999999873 56789999987644
No 93
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.59 E-value=0.37 Score=52.60 Aligned_cols=46 Identities=30% Similarity=0.664 Sum_probs=37.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
+...|.||.+.+.... .+.-|||.|+..|++.|+. ....||+|...
T Consensus 1152 ~~~~c~ic~dil~~~~-----------------~I~~cgh~~c~~c~~~~l~----~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG-----------------GIAGCGHEPCCRCDELWLY----ASSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcC-----------------CeeeechhHhhhHHHHHHH----HhccCcchhhh
Confidence 3448999999988643 4557999999999999998 67889999854
No 94
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=85.42 E-value=0.31 Score=32.90 Aligned_cols=26 Identities=31% Similarity=0.815 Sum_probs=15.5
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCccc
Q 026603 195 VCGHVYHADCLEQRTSAEDIRDPPCPLC 222 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~~p~CPIC 222 (236)
.|+=.+|..|++.++... .++.||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~--~~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHR--SNPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT---SS-B-TTT
T ss_pred ccCchHHHHHHHHHHhcC--CCCCCcCC
Confidence 466679999999998743 34479988
No 95
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.34 E-value=0.31 Score=46.35 Aligned_cols=47 Identities=23% Similarity=0.578 Sum_probs=32.8
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
...|.-|-.++.. .-+.++|-|||+.+|...- .+..||.|...+...
T Consensus 90 VHfCd~Cd~PI~I-----------------YGRmIPCkHvFCl~CAr~~------~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 90 VHFCDRCDFPIAI-----------------YGRMIPCKHVFCLECARSD------SDKICPLCDDRVQRI 136 (389)
T ss_pred eEeecccCCccee-----------------eecccccchhhhhhhhhcC------ccccCcCcccHHHHH
Confidence 4568888655443 2266799999999997543 245899998766543
No 97
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.21 E-value=0.54 Score=48.44 Aligned_cols=46 Identities=24% Similarity=0.593 Sum_probs=34.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
+...|.||...|..... ..+.|-|||+.+..|++.-.. .+|| |..+
T Consensus 10 ~~l~c~ic~n~f~~~~~--------------~Pvsl~cghtic~~c~~~lyn------~scp-~~~D 55 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRL--------------EPVSLQCGHTICGHCVQLLYN------ASCP-TKRD 55 (861)
T ss_pred HHhhchHHHHHHHHHhc--------------CcccccccchHHHHHHHhHhh------ccCC-CCcc
Confidence 56689999888876542 124578999999999997654 5788 5443
No 98
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=84.11 E-value=0.49 Score=48.00 Aligned_cols=32 Identities=28% Similarity=0.728 Sum_probs=23.2
Q ss_pred CcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 187 EQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 187 dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
.-.+..-..||++||..|+..-- +-||.|-..
T Consensus 528 ~~~~~rC~~C~avfH~~C~~r~s-------~~CPrC~R~ 559 (580)
T KOG1829|consen 528 TRNTRRCSTCLAVFHKKCLRRKS-------PCCPRCERR 559 (580)
T ss_pred cccceeHHHHHHHHHHHHHhccC-------CCCCchHHH
Confidence 33455667899999999986542 349999654
No 99
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.37 E-value=0.68 Score=44.47 Aligned_cols=56 Identities=30% Similarity=0.515 Sum_probs=35.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC--CCCCCCCc--ccccCccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE--DIRDPPCP--LCLGSLMQ 228 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~--~~~~p~CP--ICR~~l~~ 228 (236)
...+|.||...+.... ... .++.|+|.|+.+|+.+.+... ....+.|| -|...+..
T Consensus 145 ~~~~C~iC~~e~~~~~-------------~~f-~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAE-------------DMF-SVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred ccccCccCccccccHh-------------hhH-HHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence 4678999984432221 112 367899999999999997632 23557776 45544443
No 100
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.80 E-value=0.85 Score=44.24 Aligned_cols=38 Identities=26% Similarity=0.595 Sum_probs=29.0
Q ss_pred EEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 192 AVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 192 avL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
..|.||||.-.+-|.+....+ ...+.||.|-.+....+
T Consensus 351 m~L~CGHVISkdAlnrLS~ng-~~sfKCPYCP~e~~~~~ 388 (394)
T KOG2817|consen 351 MMLICGHVISKDALNRLSKNG-SQSFKCPYCPVEQLASD 388 (394)
T ss_pred eeeeccceecHHHHHHHhhCC-CeeeeCCCCCcccCHHh
Confidence 558999999999999997744 23588999976654443
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=81.29 E-value=0.46 Score=33.52 Aligned_cols=34 Identities=29% Similarity=0.603 Sum_probs=22.6
Q ss_pred EcCCC-hHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 193 VLVCG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 193 vL~CG-HvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+.|. |..+..||..++. ....||||..++..+.
T Consensus 15 Li~C~dHYLCl~CLt~ml~----~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLS----RSDRCPICGKPLPTKI 49 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-S----SSSEETTTTEE----S
T ss_pred eeeecchhHHHHHHHHHhc----cccCCCcccCcCcccc
Confidence 34685 8899999999998 5578999999988764
No 102
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=81.29 E-value=1.1 Score=47.40 Aligned_cols=56 Identities=21% Similarity=0.381 Sum_probs=39.3
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCCh-----HhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGH-----VYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGH-----vFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
.|+.+|-||.-.=.+++++. -||.. ..|.+||.+|+.-. .+..|-||..++.-++.
T Consensus 10 ~d~~~CRICr~e~~~d~pLf----------------hPCKC~GSIkYiH~eCL~eW~~~s--~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLF----------------HPCKCSGSIKYIHRECLMEWMECS--GTKKCDICHYEYKFKDI 70 (1175)
T ss_pred ccchhceeecCCCCCCCcCc----------------ccccccchhHHHHHHHHHHHHhcC--CCcceeeecceeeeeee
Confidence 46789999975544443322 24432 47999999999743 56679999999877664
No 103
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.84 E-value=0.93 Score=42.00 Aligned_cols=36 Identities=19% Similarity=0.461 Sum_probs=30.6
Q ss_pred eeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 190 AVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 190 vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
.+++..|||||-+.-|.+.-. ..|++|...|...+.
T Consensus 127 F~~l~~CGcV~SerAlKeika------s~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 127 FCALRCCGCVFSERALKEIKA------SVCHVCGAAYQEDDV 162 (293)
T ss_pred EEEEeccceeccHHHHHHhhh------ccccccCCcccccCe
Confidence 557779999999999998865 579999999987765
No 104
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=80.76 E-value=3 Score=35.25 Aligned_cols=58 Identities=22% Similarity=0.448 Sum_probs=41.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
....|-||++.-.+... .+.+| =||-..+.-|-.+.|.... ..|.||+|+..|.....
T Consensus 79 ~lYeCnIC~etS~ee~F-------LKPne-------CCgY~iCn~Cya~LWK~~~-~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 79 KLYECNICKETSAEERF-------LKPNE-------CCGYSICNACYANLWKFCN-LYPVCPVCKTSFKSSSS 136 (140)
T ss_pred CceeccCcccccchhhc-------CCccc-------ccchHHHHHHHHHHHHHcc-cCCCCCccccccccccc
Confidence 67889999987666532 23322 3898888888777555443 66999999998876544
No 105
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.00 E-value=0.81 Score=47.89 Aligned_cols=50 Identities=26% Similarity=0.566 Sum_probs=33.4
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
...|..|.++.-... ...-.+.|+-|||+||..|+..-.... .|-+|-..
T Consensus 784 e~rc~~c~~~~l~~~-----------~~~~~~~v~~c~h~yhk~c~~~~~~~~-----~~~~~~~~ 833 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSG-----------AAFDSVVVFHCGHMYHKECLMMESLRN-----ACNIESGK 833 (846)
T ss_pred hhhhhhhcccccccC-----------cccceeeEEEccchhhhcccccHHHhc-----ccChhhce
Confidence 347999976644321 124467889999999999998876622 26666443
No 106
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.14 E-value=1.8 Score=40.25 Aligned_cols=58 Identities=22% Similarity=0.416 Sum_probs=38.8
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC-----hHhhHHHHHHHHhcCCCCC----CCCcccccCccc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG-----HVYHADCLEQRTSAEDIRD----PPCPLCLGSLMQ 228 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CG-----HvFH~eCLe~Wl~~~~~~~----p~CPICR~~l~~ 228 (236)
+.+..|=||...=++.- . ..-|-||. |--|..||..|..+++..+ -.||.|..+|..
T Consensus 18 e~eR~CWiCF~TdeDn~-------------~-a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNR-------------L-AAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred ccceeEEEEeccCcccc-------------h-hhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 45678999975422210 0 11345773 6789999999997665533 579999998865
Q ss_pred C
Q 026603 229 V 229 (236)
Q Consensus 229 k 229 (236)
.
T Consensus 84 v 84 (293)
T KOG3053|consen 84 V 84 (293)
T ss_pred e
Confidence 4
No 107
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.82 E-value=0.9 Score=40.25 Aligned_cols=29 Identities=31% Similarity=0.634 Sum_probs=22.1
Q ss_pred eeEEcCCCh-HhhHHHHHHHHhcCCCCCCCCcccccCc
Q 026603 190 AVAVLVCGH-VYHADCLEQRTSAEDIRDPPCPLCLGSL 226 (236)
Q Consensus 190 vVavL~CGH-vFH~eCLe~Wl~~~~~~~p~CPICR~~l 226 (236)
.|.+|||.| .++..|-+. + ..||||+...
T Consensus 170 ~VlllPCrHl~lC~~C~~~-~-------~~CPiC~~~~ 199 (207)
T KOG1100|consen 170 TVLLLPCRHLCLCGICDES-L-------RICPICRSPK 199 (207)
T ss_pred eEEeecccceEeccccccc-C-------ccCCCCcChh
Confidence 467889988 578888766 3 3599998764
No 108
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=74.30 E-value=1 Score=43.94 Aligned_cols=63 Identities=25% Similarity=0.305 Sum_probs=0.0
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCC--CCCCCCcccccCcccCC
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED--IRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~--~~~p~CPICR~~l~~k~ 230 (236)
-.|++=+..|.-... .......+..+.+.|.||||+..+ .|-...+ ...-.||+|+..=..+.
T Consensus 278 pQCPVglnTL~fp~~----~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~V~ 342 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSK----SRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPYVP 342 (416)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CCCCcCCCccccccc----cccccccccCceeeccccceeeec---ccccccccccccccCCCccccCCcee
Confidence 356666555544321 112223345566789999998754 6754332 24678999998754443
No 109
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=74.05 E-value=2.5 Score=40.60 Aligned_cols=36 Identities=17% Similarity=0.562 Sum_probs=26.3
Q ss_pred CChHhhHHHHHHHHhcCCC---------CCCCCcccccCcccCCC
Q 026603 196 CGHVYHADCLEQRTSAEDI---------RDPPCPLCLGSLMQVES 231 (236)
Q Consensus 196 CGHvFH~eCLe~Wl~~~~~---------~~p~CPICR~~l~~k~~ 231 (236)
|--+.+.+||-+|+...+. .+-+||+||..+-..|+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 5556699999999853321 34789999999876654
No 110
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=72.13 E-value=3.2 Score=28.66 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=10.2
Q ss_pred ccccccccchhhhc
Q 026603 160 KIVCGICQKLLRRK 173 (236)
Q Consensus 160 ~~~C~IC~e~L~~~ 173 (236)
...|+.|.+.|...
T Consensus 2 ~f~CP~C~~~~~~~ 15 (54)
T PF05605_consen 2 SFTCPYCGKGFSES 15 (54)
T ss_pred CcCCCCCCCccCHH
Confidence 35799998866654
No 111
>PLN02189 cellulose synthase
Probab=71.44 E-value=3.7 Score=44.37 Aligned_cols=57 Identities=25% Similarity=0.396 Sum_probs=40.6
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
....++|.||.+.+.... +...-||.-.||---|..|.+ +..++ .+..||-|+..|.
T Consensus 31 ~~~~~~C~iCgd~vg~~~-----------~g~~fvaC~~C~fpvCr~Cye-yer~e--g~q~CpqCkt~Y~ 87 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTV-----------DGDLFVACNECGFPVCRPCYE-YERRE--GTQNCPQCKTRYK 87 (1040)
T ss_pred cccCccccccccccCcCC-----------CCCEEEeeccCCCccccchhh-hhhhc--CCccCcccCCchh
Confidence 446679999998765431 122346777888889999994 44332 5678999999987
No 112
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=71.34 E-value=1.3 Score=43.19 Aligned_cols=69 Identities=17% Similarity=0.343 Sum_probs=0.0
Q ss_pred ccccccccchhhhcccccCCCCC-CCCCCcceeEEcCCChHhhHHHHHHHHh-----cCCCCCCCCcccccCccc
Q 026603 160 KIVCGICQKLLRRKSHLLGMGST-IPSGEQHAVAVLVCGHVYHADCLEQRTS-----AEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~-~~~~dl~vVavL~CGHvFH~eCLe~Wl~-----~~~~~~p~CPICR~~l~~ 228 (236)
..+|+||...=..-..|+|.... .-..+....+.-||||+-=.....-|-. .....+..||.|...+..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 56899998653333334422211 1111233456679999999999998942 122355899999988763
No 113
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.18 E-value=3.1 Score=39.52 Aligned_cols=37 Identities=19% Similarity=0.471 Sum_probs=27.3
Q ss_pred CCChHhhHHHHHHHHhcCCC---------CCCCCcccccCcccCCC
Q 026603 195 VCGHVYHADCLEQRTSAEDI---------RDPPCPLCLGSLMQVES 231 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~---------~~p~CPICR~~l~~k~~ 231 (236)
-|.-+.+.+||-+|+..-+. +.-+||+||+.+-..+.
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 36677899999999852211 45789999999876654
No 114
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.86 E-value=3.3 Score=29.76 Aligned_cols=35 Identities=31% Similarity=0.675 Sum_probs=25.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHH
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQ 207 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~ 207 (236)
....|.+|.+.|+.++. +|.--.||=.||++|-+.
T Consensus 4 ~~~~C~~Cg~~~~~~dD--------------iVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDD--------------IVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCC--------------EEECCCCCCcccHHHHhh
Confidence 34579999999975431 344468999999999654
No 115
>PLN02436 cellulose synthase A
Probab=68.44 E-value=4.7 Score=43.79 Aligned_cols=57 Identities=25% Similarity=0.447 Sum_probs=40.2
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
....++|.||.+.+.... .++ .-||--.||---|..|.+ +..+. .+..||-|+..|.
T Consensus 33 ~~~~~iCqICGD~Vg~t~----------dGe-~FVACn~C~fpvCr~Cye-yer~e--g~~~Cpqckt~Y~ 89 (1094)
T PLN02436 33 ELSGQTCQICGDEIELTV----------DGE-PFVACNECAFPVCRPCYE-YERRE--GNQACPQCKTRYK 89 (1094)
T ss_pred ccCCccccccccccCcCC----------CCC-EEEeeccCCCccccchhh-hhhhc--CCccCcccCCchh
Confidence 456779999988764431 122 346777788889999994 44332 5578999999987
No 116
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=68.05 E-value=6.4 Score=28.62 Aligned_cols=47 Identities=34% Similarity=0.653 Sum_probs=34.2
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEcCCCh--HhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 162 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGH--VYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 162 ~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGH--vFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.|-.|-++|...+. .| .-|.+ .|+++|.+..|. ..||-|...+..+.
T Consensus 7 nCE~C~~dLp~~s~---------------~A-~ICSfECTFC~~C~e~~l~------~~CPNCgGelv~RP 55 (57)
T PF06906_consen 7 NCECCDKDLPPDSP---------------EA-YICSFECTFCADCAETMLN------GVCPNCGGELVRRP 55 (57)
T ss_pred CccccCCCCCCCCC---------------cc-eEEeEeCcccHHHHHHHhc------CcCcCCCCccccCC
Confidence 58888777766531 12 23544 799999999987 57999999987654
No 117
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=67.22 E-value=3.6 Score=41.10 Aligned_cols=35 Identities=20% Similarity=0.528 Sum_probs=29.2
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA 211 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~ 211 (236)
+...|+||...|+++ .+|+|||..+..|....+..
T Consensus 3 eelkc~vc~~f~~ep------------------iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP------------------IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc------------------eEeecccHHHHHHHHhhccc
Confidence 456799999888875 56899999999999987643
No 118
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=65.53 E-value=0.41 Score=32.17 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=23.2
Q ss_pred EEcCCChHhhHHHHHHHHh--cCCCCCCCCccccc
Q 026603 192 AVLVCGHVYHADCLEQRTS--AEDIRDPPCPLCLG 224 (236)
Q Consensus 192 avL~CGHvFH~eCLe~Wl~--~~~~~~p~CPICR~ 224 (236)
.=-.|+-.||..|+..-.. ........||.|+.
T Consensus 16 ~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 16 QCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred EcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3347999999999987654 22123688998864
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.34 E-value=3.6 Score=43.20 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=19.0
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcc
Q 026603 194 LVCGHVYHADCLEQRTSAEDIRDPPCPL 221 (236)
Q Consensus 194 L~CGHvFH~eCLe~Wl~~~~~~~p~CPI 221 (236)
-.|||.-|.+||.+|+.. .-.||.
T Consensus 797 ~~C~H~gH~sh~~sw~~~----~s~ca~ 820 (839)
T KOG0269|consen 797 QVCGHGGHDSHLKSWFFK----ASPCAK 820 (839)
T ss_pred ccccccccHHHHHHHHhc----CCCCcc
Confidence 379999999999999983 344554
No 120
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=64.69 E-value=5.6 Score=38.25 Aligned_cols=70 Identities=19% Similarity=0.334 Sum_probs=42.3
Q ss_pred ccccccccchhhhcccccCCCCC-CCCCCcceeEEcCCChHhhHHHHHHHHh-----cCCCCCCCCcccccCcccC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGST-IPSGEQHAVAVLVCGHVYHADCLEQRTS-----AEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~-~~~~dl~vVavL~CGHvFH~eCLe~Wl~-----~~~~~~p~CPICR~~l~~k 229 (236)
...|++|...=..-..|.|.... .-......-+.-|||||--..=..-|-. .....++.||.|-..+...
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 56899998653333344432221 1111222345669999988888877843 2234779999998876543
No 121
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=64.65 E-value=3.9 Score=35.79 Aligned_cols=27 Identities=30% Similarity=0.807 Sum_probs=21.1
Q ss_pred ceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccccc
Q 026603 189 HAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 224 (236)
Q Consensus 189 ~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~ 224 (236)
.++.=..|+-+||..|..+ ..||-|..
T Consensus 171 ~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 171 TTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 4566678999999999873 24999964
No 122
>PLN02400 cellulose synthase
Probab=64.18 E-value=7.8 Score=42.20 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=40.4
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
....++|-||.+++.... +...-||.-.|+---|..|. ++-.+. .+..||.|+..|.
T Consensus 33 ~~~gqiCqICGD~VG~t~-----------dGe~FVAC~eCaFPVCRpCY-EYERke--Gnq~CPQCkTrYk 89 (1085)
T PLN02400 33 NLNGQICQICGDDVGVTE-----------TGDVFVACNECAFPVCRPCY-EYERKD--GTQCCPQCKTRYR 89 (1085)
T ss_pred ccCCceeeecccccCcCC-----------CCCEEEEEccCCCccccchh-heeccc--CCccCcccCCccc
Confidence 456779999988765431 12235677788888999998 444322 5678999999986
No 123
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=63.21 E-value=7.3 Score=42.39 Aligned_cols=57 Identities=25% Similarity=0.467 Sum_probs=40.3
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
....++|-||.+.+.... .++ .-||.-.||---|..|. ++-.++ .+..||.|+..|.
T Consensus 14 ~~~~qiCqICGD~vg~~~----------~Ge-~FVAC~eC~FPVCrpCY-EYEr~e--G~q~CPqCktrYk 70 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKTV----------DGE-PFVACDVCAFPVCRPCY-EYERKD--GNQSCPQCKTKYK 70 (1079)
T ss_pred ccCCceeeecccccCcCC----------CCC-EEEEeccCCCccccchh-hhhhhc--CCccCCccCCchh
Confidence 446679999988765431 122 34677788888999999 454433 5678999999986
No 124
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=63.08 E-value=4.3 Score=38.64 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=37.1
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
-.|+||.+++...+. .+.-.+||+..+.+|+..... .+..||+||+++...
T Consensus 250 ~s~p~~~~~~~~~d~--------------~~lP~~~~~~~~l~~~~t~~~----~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDS--------------NFLPCPCGFRLCLFCHKTISD----GDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCccccccc--------------ccccccccccchhhhhhcccc----cCCCCCccCCccccC
Confidence 479999988744332 112247899988888888776 778999999877543
No 125
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=58.95 E-value=3.2 Score=28.74 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 203 DCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 203 eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.-+.+++......+..||+|...|+...
T Consensus 7 ~~~~k~i~~l~~~~~~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 7 EELKKYIEELKEAKGCCPLCGRPLDEEH 34 (54)
T ss_dssp HHHHHHHHHHTT-SEE-TTT--EE-HHH
T ss_pred HHHHHHHHHHhcCCCcCCCCCCCCCHHH
Confidence 3456666544445559999999987643
No 126
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=57.31 E-value=8.8 Score=26.54 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=13.9
Q ss_pred eeEEcCCChHhhHHHHHHHHhcC-CCCCCCCccccc
Q 026603 190 AVAVLVCGHVYHADCLEQRTSAE-DIRDPPCPLCLG 224 (236)
Q Consensus 190 vVavL~CGHvFH~eCLe~Wl~~~-~~~~p~CPICR~ 224 (236)
+++...|.|+-+-+ |+.|+... ....-.||+|.+
T Consensus 15 P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 15 PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp EEEETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 45777899974322 45555321 124467999976
No 127
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=57.18 E-value=5.8 Score=37.16 Aligned_cols=46 Identities=24% Similarity=0.548 Sum_probs=34.7
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCC--ChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVC--GHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~C--GHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
..+...|+||.+.|.-+. .-| ||.-+..|-.+-. ..||.||.+++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi-------------------~QC~nGHlaCssC~~~~~-------~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPI-------------------FQCDNGHLACSSCRTKVS-------NKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCcccc-------------------eecCCCcEehhhhhhhhc-------ccCCcccccccc
Confidence 457889999998877653 345 7888888876332 479999999984
No 128
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=55.89 E-value=6.5 Score=37.73 Aligned_cols=50 Identities=22% Similarity=0.509 Sum_probs=34.4
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
..+|++=.+.-++.. +...|.||||.-.+-|.+.-..+ ...+.||.|-..
T Consensus 336 ~FiCPVlKe~~t~EN---------------pP~ml~CgHVIskeal~~LS~nG-~~~FKCPYCP~~ 385 (396)
T COG5109 336 LFICPVLKELCTDEN---------------PPVMLECGHVISKEALSVLSQNG-VLSFKCPYCPEM 385 (396)
T ss_pred eeeccccHhhhcccC---------------CCeeeeccceeeHHHHHHHhhcC-cEEeeCCCCCcc
Confidence 457877655444433 22558999999999999876543 346889999543
No 129
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.79 E-value=2.8 Score=37.81 Aligned_cols=51 Identities=27% Similarity=0.607 Sum_probs=37.8
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcC--------CChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV--------CGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~--------CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
...|.||...+.... ...+..++. |||..+..|++.-+.... ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~------------~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~---~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSEND------------EKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG---IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccc------------cccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh---hcCCcccce
Confidence 357999988887432 112346677 999999999999987442 789999864
No 130
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=55.45 E-value=7.8 Score=35.20 Aligned_cols=47 Identities=23% Similarity=0.527 Sum_probs=35.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 226 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l 226 (236)
...+|-+|.+.+-.. ++--.||=.||..|++.++. ..+.||-|.--|
T Consensus 180 nlk~Cn~Ch~LvIqg-----------------~rCg~c~i~~h~~c~qty~q----~~~~cphc~d~w 226 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG-----------------IRCGSCNIQYHRGCIQTYLQ----RRDICPHCGDLW 226 (235)
T ss_pred HHHHHhHhHHHhhee-----------------eccCcccchhhhHHHHHHhc----ccCcCCchhccc
Confidence 356899998765443 24457788899999999999 467899995444
No 131
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=53.41 E-value=8.5 Score=37.04 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=37.0
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCC--CCCCCcccccCcccCCC
Q 026603 162 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDI--RDPPCPLCLGSLMQVES 231 (236)
Q Consensus 162 ~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~--~~p~CPICR~~l~~k~~ 231 (236)
.|++=+..|.-... .....-++..+.+.|.||||-..+ .|=...+. +.-.||+|+..=..+..
T Consensus 292 QCPVglnTL~~P~~----~~~~~~~~~QP~vYl~CGHV~G~H---~WG~~e~~g~~~r~CPmC~~~gp~V~L 356 (429)
T KOG3842|consen 292 QCPVGLNTLAFPSK----RRKRVVDEKQPWVYLNCGHVHGYH---NWGVRENTGQRERECPMCRVVGPYVPL 356 (429)
T ss_pred CCCcccceeecccc----cccccccccCCeEEEecccccccc---ccccccccCcccCcCCeeeeecceeee
Confidence 57776666655432 112233455567889999984332 57433222 45789999987554443
No 132
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=53.30 E-value=8.7 Score=34.24 Aligned_cols=54 Identities=22% Similarity=0.499 Sum_probs=35.9
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC-----hHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG-----HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CG-----HvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
...|-||......... + .-+.+|. ...|..|++.|+... .+..|.+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~-----------~---~l~~pC~C~g~l~~vH~~cl~~W~~~~--~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNG-----------L---LLISPCSCKGSLAYVHRSCLEKWFSIK--GNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccc-----------c---ccccCccccCcHHHHHHHHHHhhhccc--cCeeeecccccceec
Confidence 5679999876544320 0 0122342 456999999999843 678999998876544
No 133
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=53.07 E-value=4.5 Score=41.93 Aligned_cols=52 Identities=21% Similarity=0.584 Sum_probs=39.5
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
...|+||...+.++ ..+.|-|.|...|+..-+.... ....||+|+..+..+.
T Consensus 21 ~lEc~ic~~~~~~p------------------~~~kc~~~~l~~~~n~~f~~~~-~~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 21 ILECPICLEHVKEP------------------SLLKCDHIFLKFCLNKLFESKK-GPKQCALCKSDIEKRS 72 (684)
T ss_pred hccCCceeEEeecc------------------chhhhhHHHHhhhhhceeeccC-ccccchhhhhhhhhhh
Confidence 34799999887775 3478999999999988765332 3578999998776654
No 134
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=52.07 E-value=15 Score=28.35 Aligned_cols=58 Identities=19% Similarity=0.364 Sum_probs=23.8
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
.+..++|-||.+...... +....||.-.|+--.+..|.+-=..+ ....||.|+..|..
T Consensus 6 ~~~~qiCqiCGD~VGl~~-----------~Ge~FVAC~eC~fPvCr~CyEYErke---g~q~CpqCkt~ykr 63 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTE-----------NGEVFVACHECAFPVCRPCYEYERKE---GNQVCPQCKTRYKR 63 (80)
T ss_dssp --SS-B-SSS--B--B-S-----------SSSB--S-SSS-----HHHHHHHHHT---S-SB-TTT--B---
T ss_pred hcCCcccccccCccccCC-----------CCCEEEEEcccCCccchhHHHHHhhc---CcccccccCCCccc
Confidence 346789999988765431 11224566788888899998866653 45789999988753
No 135
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=51.52 E-value=11 Score=40.88 Aligned_cols=56 Identities=25% Similarity=0.487 Sum_probs=40.3
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
...++|.||.+...... .++ .-||.-.|+---|..|. ++..++ .+..||-|+..|.
T Consensus 13 ~~~~~c~iCGd~vg~~~----------~Ge-~FVAC~eC~fpvCr~cy-eye~~~--g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKE----------DGQ-PFVACHVCGFPVCKPCY-EYERSE--GNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCC----------CCC-EEEEeccCCCccccchh-hhhhhc--CCccCCccCCchh
Confidence 46789999988765431 222 35677788888999999 454433 5578999999987
No 136
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.93 E-value=8 Score=35.23 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=16.8
Q ss_pred eeEEcCCChHhhHHHHHHHHh
Q 026603 190 AVAVLVCGHVYHADCLEQRTS 210 (236)
Q Consensus 190 vVavL~CGHvFH~eCLe~Wl~ 210 (236)
..-++.|+|||+..|...-..
T Consensus 17 ~f~LTaC~HvfC~~C~k~~~~ 37 (233)
T KOG4739|consen 17 PFFLTACRHVFCEPCLKASSP 37 (233)
T ss_pred ceeeeechhhhhhhhcccCCc
Confidence 346679999999999877654
No 137
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.76 E-value=12 Score=36.42 Aligned_cols=36 Identities=25% Similarity=0.567 Sum_probs=27.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 210 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~ 210 (236)
.....|+||.+.+.. ....+.|||.|+..|...++.
T Consensus 68 ~~~~~c~ic~~~~~~-----------------~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG-----------------EIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcc-----------------hhhhcCCCcHHHHHHHHHHhh
Confidence 456789999876544 124579999999999999975
No 138
>PLN02195 cellulose synthase A
Probab=49.90 E-value=16 Score=39.58 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=39.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
..++|.||.+.+.... +...-||.-.||---|..|. ++-.++ .+..||.|+..|.
T Consensus 5 ~~~~c~~cgd~~~~~~-----------~g~~fvaC~eC~~pvCrpCy-eyer~e--g~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDS-----------NGEAFVACHECSYPLCKACL-EYEIKE--GRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCC-----------CCCeEEEeccCCCccccchh-hhhhhc--CCccCCccCCccc
Confidence 3458999988765432 12235787889999999999 554433 5578999999988
No 139
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=48.40 E-value=6.9 Score=39.88 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=29.9
Q ss_pred cccCCCCCCcccccccccchhhh-----cccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHH
Q 026603 150 VTNAASPDTVKIVCGICQKLLRR-----KSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQR 208 (236)
Q Consensus 150 ~~~s~Sp~~d~~~C~IC~e~L~~-----~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~W 208 (236)
.+.+.++ .....|.||++.|++ .+.|+ ......+.=|-+||..|+..-
T Consensus 504 ~~Vp~d~-e~~~~C~IC~EkFe~v~d~e~~~Wm----------~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 504 ELVPADS-ERQASCPICQEKFEVVFDQEEDLWM----------YKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred eecccCc-ccccCCcccccccceeecchhhhee----------ecceeeeccCceeeccccchH
Confidence 4444444 677899999999975 22332 001122235889999998764
No 140
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.35 E-value=16 Score=28.16 Aligned_cols=28 Identities=36% Similarity=0.662 Sum_probs=23.0
Q ss_pred ChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 197 GHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 197 GHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
-|.|+++|.+.-|. ..||-|-.++.-+.
T Consensus 28 EcTFCadCae~~l~------g~CPnCGGelv~RP 55 (84)
T COG3813 28 ECTFCADCAENRLH------GLCPNCGGELVARP 55 (84)
T ss_pred eeehhHhHHHHhhc------CcCCCCCchhhcCc
Confidence 47899999999887 68999998876543
No 141
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=42.79 E-value=18 Score=38.72 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=36.3
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh--cCCCCCCCCcccccCc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS--AEDIRDPPCPLCLGSL 226 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~--~~~~~~p~CPICR~~l 226 (236)
.+..+|.||...+....- .....-+-.|+|-|+-.||..|.. .+....-.|++|..-|
T Consensus 94 a~s~Ss~~C~~E~S~~~d-----------s~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVD-----------SSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccchhheecCCccc-----------ccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 466788888776665210 000111224999999999999974 3334556688886544
No 142
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=42.52 E-value=7.5 Score=24.56 Aligned_cols=21 Identities=33% Similarity=0.819 Sum_probs=13.3
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 195 VCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
.|||+|-.+- .+..||+|...
T Consensus 6 ~CGy~y~~~~----------~~~~CP~Cg~~ 26 (33)
T cd00350 6 VCGYIYDGEE----------APWVCPVCGAP 26 (33)
T ss_pred CCCCEECCCc----------CCCcCcCCCCc
Confidence 5776664432 34689999753
No 143
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=40.74 E-value=22 Score=33.12 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=34.0
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHHhcCCCCCCCCc--ccccCc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAEDIRDPPCP--LCLGSL 226 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~-CGHvFH~eCLe~Wl~~~~~~~p~CP--ICR~~l 226 (236)
+.+..|+||+-+--- +.+. ++-+-| |=|-.+..|+++.+.. ....|| -|-+-+
T Consensus 8 ~~d~~CPvCksDrYL------------nPdi-k~linPECyHrmCESCvdRIFs~---GpAqCP~~gC~kIL 63 (314)
T COG5220 8 MEDRRCPVCKSDRYL------------NPDI-KILINPECYHRMCESCVDRIFSR---GPAQCPYKGCGKIL 63 (314)
T ss_pred hhcccCCcccccccc------------CCCe-EEEECHHHHHHHHHHHHHHHhcC---CCCCCCCccHHHHH
Confidence 345689999754221 1111 122234 9999999999999984 446799 675443
No 144
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=38.76 E-value=6.9 Score=36.57 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=38.7
Q ss_pred CCCCCCcccccccccc-hhhhc--ccccCCCCCCCCCCcceeEEcCCChHhhHHHHHH-HHhcCCCCC--CCCcccccCc
Q 026603 153 AASPDTVKIVCGICQK-LLRRK--SHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQ-RTSAEDIRD--PPCPLCLGSL 226 (236)
Q Consensus 153 s~Sp~~d~~~C~IC~e-~L~~~--~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~-Wl~~~~~~~--p~CPICR~~l 226 (236)
.+-|+.+...|.+|.. .|+-- -. ..-.||++|+..|-.+ ++......+ ..|++|-..+
T Consensus 161 ~W~PD~ea~~C~~C~~~~Ftl~~RRH----------------HCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el 224 (288)
T KOG1729|consen 161 VWLPDSEATECMVCGCTEFTLSERRH----------------HCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEEL 224 (288)
T ss_pred cccCcccceecccCCCccccHHHHHH----------------HHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHH
Confidence 4456778889999998 44321 11 1247999999999877 322111122 2699998887
Q ss_pred cc
Q 026603 227 MQ 228 (236)
Q Consensus 227 ~~ 228 (236)
..
T Consensus 225 ~~ 226 (288)
T KOG1729|consen 225 EK 226 (288)
T ss_pred hc
Confidence 65
No 145
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=36.17 E-value=24 Score=33.93 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=23.3
Q ss_pred eeEEcCCCh-HhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 190 AVAVLVCGH-VYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 190 vVavL~CGH-vFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
..++.+||| +|+.+|.. +. .++.||+|-.-
T Consensus 355 st~~~~~~~n~~~~~~a~--~s----~~~~~~~c~~~ 385 (394)
T KOG2113|consen 355 STIWSGGNMNLSPGSLAS--AS----ASPTSSTCDHN 385 (394)
T ss_pred eeEeecCCcccChhhhhh--cc----cCCcccccccc
Confidence 346679999 78999988 33 56999999754
No 146
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=34.34 E-value=17 Score=26.73 Aligned_cols=19 Identities=37% Similarity=0.421 Sum_probs=13.7
Q ss_pred eeEEcCCChHhhHHHHHHH
Q 026603 190 AVAVLVCGHVYHADCLEQR 208 (236)
Q Consensus 190 vVavL~CGHvFH~eCLe~W 208 (236)
=||.|.|||.=|..=--.|
T Consensus 11 WVA~L~CGH~QHvRH~PPw 29 (61)
T PF12088_consen 11 WVAELSCGHTQHVRHDPPW 29 (61)
T ss_pred EEEEecccccccccCCCCC
Confidence 5799999998876543333
No 147
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.27 E-value=10 Score=36.03 Aligned_cols=57 Identities=21% Similarity=0.392 Sum_probs=42.9
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCCC
Q 026603 155 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 232 (236)
Q Consensus 155 Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~~ 232 (236)
....+..+|-||...|..... .--|+|.|...|...|... ...||.|+....+.-+.
T Consensus 100 ~~~~~~~~~~~~~g~l~vpt~-----------------~qg~w~qf~~~~p~~~~~~----~~~~~d~~~~~~pv~aG 156 (324)
T KOG0824|consen 100 GFQQDHDICYICYGKLTVPTR-----------------IQGCWHQFCYVCPKSNFAM----GNDCPDCRGKISPVLAG 156 (324)
T ss_pred cccCCccceeeeeeeEEeccc-----------------ccCceeeeeecCCchhhhh----hhccchhhcCcCceecc
Confidence 334567899999988877531 1239999999999999873 35799998887776553
No 148
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.16 E-value=9 Score=32.74 Aligned_cols=46 Identities=28% Similarity=0.539 Sum_probs=27.9
Q ss_pred Ccccccccccch-hhhcccccCCCCCCCCCCcceeEEcCCCh-------HhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 158 TVKIVCGICQKL-LRRKSHLLGMGSTIPSGEQHAVAVLVCGH-------VYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 158 ~d~~~C~IC~e~-L~~~~~~~~~~~~~~~~dl~vVavL~CGH-------vFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
.++.+|.||++. |.+ -||| -|++.|--+-....++---.|-+|++.
T Consensus 63 ~ddatC~IC~KTKFAD----------------------G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD----------------------GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhccccc----------------------ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 367899999864 122 2555 466777665554333334568888764
No 149
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.48 E-value=32 Score=34.35 Aligned_cols=46 Identities=28% Similarity=0.597 Sum_probs=33.2
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
...|.||.... . .++-+|- |.-|+..|+. -...||+|.......+.
T Consensus 479 ~~~~~~~~~~~-~------------------~~~~~~~---~~~~l~~~~~----~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 479 NDVCAICYQEM-S------------------ARITPCS---HALCLRKWLY----VQEVCPLCHTYMKEDDF 524 (543)
T ss_pred cCcchHHHHHH-H------------------hcccccc---chhHHHhhhh----hccccCCCchhhhcccc
Confidence 56788887665 1 1344666 9999999998 55789999887655543
No 150
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=29.69 E-value=19 Score=32.03 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=9.9
Q ss_pred cccccccchhhh
Q 026603 161 IVCGICQKLLRR 172 (236)
Q Consensus 161 ~~C~IC~e~L~~ 172 (236)
..|+||..+|..
T Consensus 3 ~~CP~C~~~l~~ 14 (272)
T PRK11088 3 YQCPLCHQPLTL 14 (272)
T ss_pred ccCCCCCcchhc
Confidence 369999999964
No 151
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=28.96 E-value=70 Score=29.99 Aligned_cols=56 Identities=20% Similarity=0.411 Sum_probs=35.3
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCC-----CCCCCcccccCc
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDI-----RDPPCPLCLGSL 226 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~-----~~p~CPICR~~l 226 (236)
...|-||.+.+.+..... +. . ---.|+-++|..||-..+..... ....||.|.+.+
T Consensus 182 ~~~celc~~ei~e~~~~~--a~-----c----~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSR--AT-----C----PNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhcccccee--cc-----C----CCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 358999999885443110 00 0 00248889999999995443322 236799998855
No 152
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=26.97 E-value=27 Score=24.12 Aligned_cols=23 Identities=43% Similarity=1.041 Sum_probs=15.1
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCccc
Q 026603 195 VCGHVYHADCLEQRTSAEDIRDPPCPLC 222 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~~p~CPIC 222 (236)
.|||.|-+. +...+. ....||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~----~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTR----RGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-Hhhhcc----CCCCCCCC
Confidence 678877665 444443 45679988
No 154
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.60 E-value=33 Score=32.07 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=27.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 210 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~ 210 (236)
+-+.|.+|++++.++ .+.+=||+|..+||.+++.
T Consensus 42 ~FdcCsLtLqPc~dP------------------vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP------------------VITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCC------------------ccCCCCeeeeHHHHHHHHH
Confidence 456799999988775 3457799999999999864
No 155
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=26.10 E-value=37 Score=20.66 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=10.7
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 026603 162 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 205 (236)
Q Consensus 162 ~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCL 205 (236)
.|.+|.+..... . ...=..|.-++|.+|+
T Consensus 2 ~C~~C~~~~~~~-~--------------~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG-W--------------FYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S-----------------EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC-c--------------eEECccCCCccChhcC
Confidence 588888776551 1 2244689999999995
No 156
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.88 E-value=31 Score=33.56 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=25.8
Q ss_pred cCCChHhhHHHHHHHHhcC----------------------CCCCCCCcccccCcccCC
Q 026603 194 LVCGHVYHADCLEQRTSAE----------------------DIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 194 L~CGHvFH~eCLe~Wl~~~----------------------~~~~p~CPICR~~l~~k~ 230 (236)
=.|||.|+..|.+.|=... ..+-..||.|..++.+..
T Consensus 182 C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek~~ 240 (444)
T KOG1815|consen 182 CGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEKDG 240 (444)
T ss_pred CCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhccC
Confidence 3799999999887663211 223356999999887766
No 157
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=25.30 E-value=3.9 Score=30.85 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=17.3
Q ss_pred ChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCCC
Q 026603 197 GHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 232 (236)
Q Consensus 197 GHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~~ 232 (236)
||.++..|...+.. ...||-|..++..-.+.
T Consensus 16 ~~~~C~~C~~~~~~-----~a~CPdC~~~Le~LkAC 46 (70)
T PF07191_consen 16 GHYHCEACQKDYKK-----EAFCPDCGQPLEVLKAC 46 (70)
T ss_dssp TEEEETTT--EEEE-----EEE-TTT-SB-EEEEET
T ss_pred CEEECcccccccee-----cccCCCcccHHHHHHHh
Confidence 66677778777655 25799998887655443
No 158
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=24.50 E-value=28 Score=22.46 Aligned_cols=34 Identities=32% Similarity=0.628 Sum_probs=20.0
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhh
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYH 201 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH 201 (236)
.+|+-|...|...+.. ++. ....|.=-.|||+|+
T Consensus 3 i~Cp~C~~~y~i~d~~------ip~-~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEK------IPP-KGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHH------CCC-CCcEEECCCCCCEeC
Confidence 4688898888765421 111 122345557888874
No 159
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=24.10 E-value=36 Score=20.57 Aligned_cols=10 Identities=30% Similarity=1.112 Sum_probs=8.2
Q ss_pred CCCcccccCc
Q 026603 217 PPCPLCLGSL 226 (236)
Q Consensus 217 p~CPICR~~l 226 (236)
..||||.+.+
T Consensus 2 v~CPiC~~~v 11 (26)
T smart00734 2 VQCPVCFREV 11 (26)
T ss_pred CcCCCCcCcc
Confidence 3699998876
No 160
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.00 E-value=37 Score=20.69 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=6.5
Q ss_pred ccccccchhhh
Q 026603 162 VCGICQKLLRR 172 (236)
Q Consensus 162 ~C~IC~e~L~~ 172 (236)
+|+-|...+..
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 47777655443
No 161
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=23.49 E-value=17 Score=24.07 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=16.8
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCccccc
Q 026603 194 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 224 (236)
Q Consensus 194 L~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~ 224 (236)
..|||.|-.. ....+.....||.|..
T Consensus 9 ~~Cg~~fe~~-----~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVL-----QSISEDDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEE-----EEcCCCCCCcCCCCCC
Confidence 4788888543 2222235578999988
No 162
>PRK11827 hypothetical protein; Provisional
Probab=22.62 E-value=32 Score=25.09 Aligned_cols=14 Identities=36% Similarity=0.823 Sum_probs=10.2
Q ss_pred CCCcccccCcccCC
Q 026603 217 PPCPLCLGSLMQVE 230 (236)
Q Consensus 217 p~CPICR~~l~~k~ 230 (236)
..||+|+..+....
T Consensus 9 LaCP~ckg~L~~~~ 22 (60)
T PRK11827 9 IACPVCNGKLWYNQ 22 (60)
T ss_pred eECCCCCCcCeEcC
Confidence 56888888876543
No 163
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=21.25 E-value=29 Score=22.61 Aligned_cols=29 Identities=31% Similarity=0.629 Sum_probs=18.8
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 195 VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
.||.+||.. ......+..|.+|..+|..+
T Consensus 6 ~Cg~~Yh~~------~~pP~~~~~Cd~cg~~L~qR 34 (36)
T PF05191_consen 6 KCGRIYHIE------FNPPKVEGVCDNCGGELVQR 34 (36)
T ss_dssp TTTEEEETT------TB--SSTTBCTTTTEBEBEE
T ss_pred CCCCccccc------cCCCCCCCccCCCCCeeEeC
Confidence 699999943 11123557899998877654
No 164
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=20.33 E-value=16 Score=25.88 Aligned_cols=41 Identities=29% Similarity=0.473 Sum_probs=20.6
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh
Q 026603 156 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 210 (236)
Q Consensus 156 p~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~ 210 (236)
|+.+...|.+|.+.|.--. ..--=-.||++|+..|......
T Consensus 5 ~d~~~~~C~~C~~~F~~~~--------------rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 5 PDSEASNCMICGKKFSLFR--------------RRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp SGGG-SB-TTT--B-BSSS---------------EEE-TTT--EEECCCS-EEEE
T ss_pred CCCCCCcCcCcCCcCCCce--------------eeEccCCCCCEECCchhCCEEc
Confidence 4456678999999984311 0112247999999999987754
No 165
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=36 Score=32.37 Aligned_cols=48 Identities=17% Similarity=0.399 Sum_probs=32.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc-CCCCCCCCc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA-EDIRDPPCP 220 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~-~~~~~p~CP 220 (236)
.-..|.||.+-|++.+++. ---.=+|-||.-|-.+.++. ....+..||
T Consensus 267 apLcCTLC~ERLEDTHFVQ--------------CPSVp~HKFCFPCSResIK~Qg~sgevYCP 315 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQ--------------CPSVPSHKFCFPCSRESIKQQGASGEVYCP 315 (352)
T ss_pred CceeehhhhhhhccCceee--------------cCCCcccceecccCHHHHHhhcCCCceeCC
Confidence 3468999999999986531 11124799999999998763 233445555
No 166
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=20.13 E-value=49 Score=22.29 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=25.6
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 210 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~ 210 (236)
..|.+|.+.|..-.- ...-..||++|...|+.....
T Consensus 3 ~~C~~C~~~F~~~~r--------------k~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRR--------------RHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCcc--------------ccccCcCcCCcChHHcCCeee
Confidence 469999887765210 113347999999999998865
No 167
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=20.03 E-value=48 Score=29.99 Aligned_cols=27 Identities=19% Similarity=0.656 Sum_probs=17.9
Q ss_pred hHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 201 HADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 201 H~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
-..||.+--.. ....|||||-++...+
T Consensus 96 RktCIrkn~~~---~gnpCPICRDeyL~~D 122 (239)
T KOG4021|consen 96 RKTCIRKNGRF---LGNPCPICRDEYLYFD 122 (239)
T ss_pred hhHHHhhcCee---cCCCCCccccceEEEe
Confidence 45688875321 3478999998875543
Done!